Psyllid ID: psy5910

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-----
Protein Sequence
MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIPVL
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEEEcccccccccccccEEEEccEEEEEccccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHHHHccccHHHHccccEEEEcccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEEEccEEEEEEccccccHHHHHHHHHcccccccccccccHHHcccccccHHHHccccccc
Secondary Structure Prediction (SSPRO)
cHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHcccccEEEEccccccHHHHHHHHHHHHcccEEEEEHHHHcccccccccccHHHHHHHHHccccHHHHHHHEEEEEcHHHHHcccccccccHHHHHHHHHHHHHHHHccEEEcccccccccccccccEEEEccccEEEEEccHHHHHHHHHHHHccccccccccEccccHHHHcccHHHHHHccccccc
Coil and Loop (DISEMBL)
meldrhiigqhetkKIVSVGVYNHYKRLFLLKSkniyleksnillvgptgcgkTLMVKTLAKIINVPIIVvdatsfteagyvgdDVESIIQKLLHECDYDVELAEQSIIYIDEIdkiskktdvvsgkdvsgegVQQSLLKLIEGVNLSITSLaekknpsqnpqvfnidttnILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLIcetntedlinfgiipvl
Flexible Loop (DISEMBL)
meldrhiigqhetkkivsvGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLaekknpsqnpqVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICetntedlinfgiipvl
Low Complexity Region (SEG)
MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIPVL
Disordered region (IsUnstruct)
******IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS***********QVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIP**
Disordered Region (DISOPRED)
MELDRHIIGQHETKKIVSVGVYNHYKRLFLL****IYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDV*SGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFII*****************NLICETNTEDLINFGIIPVL
Disordered Region (DISEMBL)
MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK**********GEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIPVL
Disordered Region (DISPRO)
*ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK*****GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIPVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIPVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	225	2.2.26 [Sep-21-2011]
Q472D2	425	ATP-dependent Clp proteas	yes	N/A	0.982	0.52	0.536	8e-64
Q1LM63	425	ATP-dependent Clp proteas	yes	N/A	0.982	0.52	0.536	1e-63
Q0KBK3	425	ATP-dependent Clp proteas	yes	N/A	0.982	0.52	0.536	1e-63
B3R4W2	425	ATP-dependent Clp proteas	yes	N/A	0.982	0.52	0.536	1e-63
Q1QVW2	426	ATP-dependent Clp proteas	yes	N/A	0.973	0.514	0.521	1e-62
Q0BEF7	423	ATP-dependent Clp proteas	yes	N/A	0.982	0.522	0.532	1e-62
B1YRZ4	423	ATP-dependent Clp proteas	yes	N/A	0.982	0.522	0.532	1e-62
Q39FE9	423	ATP-dependent Clp proteas	yes	N/A	0.982	0.522	0.532	1e-62
B4EBM2	423	ATP-dependent Clp proteas	yes	N/A	0.982	0.522	0.532	1e-62
A0K846	423	ATP-dependent Clp proteas	yes	N/A	0.982	0.522	0.532	1e-62

>sp|Q472D2|CLPX_CUPPJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) GN=clpX PE=3 SV=1

 Score =  243 bits (620), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 169/231 (73%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ + KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 77  LDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLA 136

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+VE A++ I+YIDEIDKIS+K+
Sbjct: 137 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKS 196

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 197 DNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQD--FLQVDTTNILFICGGAF 254

Query: 181 SGIENFIINRINQE-TNFLEKLNNN-----YNLICETNTEDLINFGIIPVL 225
            G+E  I+ R ++    F  ++ +        ++ +T  EDLI FG+IP L
Sbjct: 255 DGLEKVIMQRSDKTGIGFAAQVQSKEEREVSEVLPQTEPEDLIKFGLIPEL 305

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.
Cupriavidus pinatubonensis (strain JMP134 / LMG 1197) (taxid: 264198)

>sp|Q1LM63|CLPX_RALME ATP-dependent Clp protease ATP-binding subunit ClpX OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=clpX PE=3 SV=1

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 169/231 (73%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ + KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 77  LDQYVIGQDQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLA 136

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+VE A++ I+YIDEIDKIS+K+
Sbjct: 137 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKS 196

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 197 DNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQD--FLQVDTTNILFICGGAF 254

Query: 181 SGIENFIINRINQE-TNFLEKLNNN-----YNLICETNTEDLINFGIIPVL 225
            G+E  I+ R ++    F  ++ +        ++ +T  EDLI FG+IP L
Sbjct: 255 DGLEKVIMQRSDKTGIGFAAQVQSKEEREVSEVLPQTEPEDLIKFGLIPEL 305

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) (taxid: 266264)

>sp|Q0KBK3|CLPX_CUPNH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=clpX PE=3 SV=1

 Score =  243 bits (619), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 169/231 (73%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ + KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 77  LDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLA 136

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+VE A++ I+YIDEIDKIS+K+
Sbjct: 137 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKS 196

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 197 DNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQD--FLQVDTTNILFICGGAF 254

Query: 181 SGIENFIINRINQET-NFLEKLNNN-----YNLICETNTEDLINFGIIPVL 225
            G+E  I+ R ++    F  ++ +        ++ +T  EDLI FG+IP L
Sbjct: 255 DGLEKVIMQRSDKTGIGFAAQVKSKEERDASEVLPQTEPEDLIKFGLIPEL 305

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666)

>sp|B3R4W2|CLPX_CUPTR ATP-dependent Clp protease ATP-binding subunit ClpX OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=clpX PE=3 SV=1

 Score =  242 bits (618), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 169/231 (73%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ + KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 77  LDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLA 136

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+VE A++ I+YIDEIDKIS+K+
Sbjct: 137 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKS 196

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 197 DNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQD--FLQVDTTNILFICGGAF 254

Query: 181 SGIENFIINRINQE-TNFLEKLNNN-----YNLICETNTEDLINFGIIPVL 225
            G+E  I+ R ++    F  ++ +        ++ +T  EDLI FG+IP L
Sbjct: 255 DGLEKVIMQRSDKTGIGFAAQVKSKEERDVSEVLPQTEPEDLIKFGLIPEL 305

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546)

>sp|Q1QVW2|CLPX_CHRSD ATP-dependent Clp protease ATP-binding subunit ClpX OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=clpX PE=3 SV=1

 Score =  239 bits (611), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/230 (52%), Positives = 165/230 (71%), Gaps = 11/230 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFL-LKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD ++IGQ   K+++SV VYNHYKRL   +KS+++ L KSNILL+GPTG GKTL+ +T+A
Sbjct: 75  LDDYVIGQDRAKRVLSVAVYNHYKRLRADVKSEDVELGKSNILLIGPTGSGKTLLAETMA 134

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP  + DAT+ TEAGYVG+DVE+IIQKLL +CDYDV+ A++ I+YIDEIDKIS+K+
Sbjct: 135 RLLNVPFTIADATTLTEAGYVGEDVENIIQKLLQKCDYDVDKAQRGIVYIDEIDKISRKS 194

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   SI     +K+P Q  +   +DT+N+LFI GGAF
Sbjct: 195 DNPSITRDVSGEGVQQALLKLIEGTTASIPPQGGRKHPQQ--EFLQVDTSNMLFIVGGAF 252

Query: 181 SGIENFIINRI-------NQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           +G+E  I +R+       N E    +      +++     EDL+ FG+IP
Sbjct: 253 AGLEKVIRDRVEKGGIGFNAEVKSKDSEKAMGDILAGVEPEDLVKFGLIP 302

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) (taxid: 290398)

>sp|Q0BEF7|CLPX_BURCM ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=clpX PE=3 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 167/231 (72%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ   KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 76  LDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGKTLLAQTLA 135

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+V+ A++ I+YIDEIDKIS+K+
Sbjct: 136 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKS 195

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKL+EG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 196 DNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQD--FIQVDTTNILFICGGAF 253

Query: 181 SGIENFIINRINQ------ETNFLEKLNNNYNLICETNTEDLINFGIIPVL 225
            G+E  I +R  +       T   ++  +   ++ ET  EDLI FG+IP L
Sbjct: 254 DGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPEL 304

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670)

>sp|B1YRZ4|CLPX_BURA4 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia ambifaria (strain MC40-6) GN=clpX PE=3 SV=1

 Score =  239 bits (610), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 167/231 (72%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ   KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 76  LDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGKTLLAQTLA 135

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+V+ A++ I+YIDEIDKIS+K+
Sbjct: 136 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKS 195

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKL+EG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 196 DNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQD--FIQVDTTNILFICGGAF 253

Query: 181 SGIENFIINRINQ------ETNFLEKLNNNYNLICETNTEDLINFGIIPVL 225
            G+E  I +R  +       T   ++  +   ++ ET  EDLI FG+IP L
Sbjct: 254 DGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPEL 304

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Burkholderia ambifaria (strain MC40-6) (taxid: 398577)

>sp|Q39FE9|CLPX_BURS3 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia sp. (strain 383) GN=clpX PE=3 SV=1

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 167/231 (72%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ   KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 76  LDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGKTLLAQTLA 135

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+V+ A++ I+YIDEIDKIS+K+
Sbjct: 136 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKS 195

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKL+EG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 196 DNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQD--FIQVDTTNILFICGGAF 253

Query: 181 SGIENFIINRINQ------ETNFLEKLNNNYNLICETNTEDLINFGIIPVL 225
            G+E  I +R  +       T   ++  +   ++ ET  EDLI FG+IP L
Sbjct: 254 DGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPEL 304

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Burkholderia sp. (strain 383) (taxid: 269483)

>sp|B4EBM2|CLPX_BURCJ ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=clpX PE=3 SV=1

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 167/231 (72%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ   KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 76  LDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGKTLLAQTLA 135

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+V+ A++ I+YIDEIDKIS+K+
Sbjct: 136 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKS 195

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKL+EG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 196 DNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQD--FIQVDTTNILFICGGAF 253

Query: 181 SGIENFIINRINQ------ETNFLEKLNNNYNLICETNTEDLINFGIIPVL 225
            G+E  I +R  +       T   ++  +   ++ ET  EDLI FG+IP L
Sbjct: 254 DGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPEL 304

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591)

>sp|A0K846|CLPX_BURCH ATP-dependent Clp protease ATP-binding subunit ClpX OS=Burkholderia cenocepacia (strain HI2424) GN=clpX PE=3 SV=1

 Score =  239 bits (609), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 123/231 (53%), Positives = 167/231 (72%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ   KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 76  LDQYVIGQERAKKILAVAVYNHYKRLKHLDKKDDVELSKSNILLIGPTGSGKTLLAQTLA 135

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+V+ A++ I+YIDEIDKIS+K+
Sbjct: 136 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVDKAQRGIVYIDEIDKISRKS 195

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKL+EG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 196 DNPSITRDVSGEGVQQALLKLVEGTMASVPPQGGRKHPNQD--FIQVDTTNILFICGGAF 253

Query: 181 SGIENFIINRINQ------ETNFLEKLNNNYNLICETNTEDLINFGIIPVL 225
            G+E  I +R  +       T   ++  +   ++ ET  EDLI FG+IP L
Sbjct: 254 DGLEKVITDRTEKTGIGFGATVKSKQERDAGEVLRETEPEDLIKFGLIPEL 304

ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.

Burkholderia cenocepacia (strain HI2424) (taxid: 331272)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
400404347	356	ATP-dependent Clp protease ATP-binding s	0.991	0.626	0.829	2e-98
116334975	355	ATP-dependent protease ATP-binding subun	0.977	0.619	0.789	4e-92
400404573	355	ATP-dependent Clp protease ATP-binding s	0.986	0.625	0.798	8e-91
400403869	348	ATP-dependent Clp protease ATP-binding s	0.986	0.637	0.748	5e-89
400404796	355	ATP-dependent Clp protease ATP-binding s	0.977	0.619	0.753	3e-88
400404107	348	ATP-dependent Clp protease ATP-binding s	0.986	0.637	0.766	4e-85
406708291	417	endopeptidase Clp ATP-binding regulatory	0.977	0.527	0.551	9e-63
291614262	418	ATP-dependent Clp protease ATP-binding p	0.977	0.526	0.552	3e-62
73541075	425	ATP-dependent protease ATP-binding subun	0.982	0.52	0.536	4e-62
395762550	422	ATP-dependent protease ATP-binding subun	0.982	0.523	0.545	5e-62

>gi|400404347|ref|YP_006587367.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii HC isolate Thao2000] gi|400362868|gb|AFP83939.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii HC isolate Thao2000]

 Score =  364 bits (934), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/223 (82%), Positives = 209/223 (93%)

Query: 1   MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
           +ELDR+I+GQHETKKI+SVGVYNHYK+L LLK+KNIYLEKSNILL+GPTGCGKTLMVKTL
Sbjct: 22  IELDRYIVGQHETKKIISVGVYNHYKKLHLLKTKNIYLEKSNILLIGPTGCGKTLMVKTL 81

Query: 61  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
           AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC+Y+VELAE+SIIYIDEIDKISKK
Sbjct: 82  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECEYNVELAEKSIIYIDEIDKISKK 141

Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           TD  SGKDVSGEGVQQSLLKLIEGVNL+I SL +KKN  QN Q FN+DTTNILFIAGGAF
Sbjct: 142 TDYNSGKDVSGEGVQQSLLKLIEGVNLTINSLLDKKNQQQNNQTFNLDTTNILFIAGGAF 201

Query: 181 SGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           SGIENF+ +RI++ET+F++K  +N NL+ +TN+EDLINFGIIP
Sbjct: 202 SGIENFVFDRISKETSFIDKAVDNNNLLFKTNSEDLINFGIIP 244

Source: Candidatus Carsonella ruddii HC isolate Thao2000

Species: Candidatus Carsonella ruddii

Genus: Candidatus Carsonella

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|116334975|ref|YP_802470.1| ATP-dependent protease ATP-binding subunit [Candidatus Carsonella ruddii PV] gi|116235256|dbj|BAF35104.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii PV]

 Score =  343 bits (879), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 176/223 (78%), Positives = 197/223 (88%), Gaps = 3/223 (1%)

Query: 1   MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
           +ELDR+IIGQ+ETKKI+SV VYNHYKRLFL+KSK I LEKSNI+LVGPTGCGKTLMVKTL
Sbjct: 24  LELDRYIIGQNETKKIISVAVYNHYKRLFLIKSKKILLEKSNIILVGPTGCGKTLMVKTL 83

Query: 61  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
           AKI+NVPII VDATSFTEAGYVGDDVESIIQKLLHEC+Y+VEL E+SIIYIDEIDKISKK
Sbjct: 84  AKIVNVPIICVDATSFTEAGYVGDDVESIIQKLLHECNYNVELTEKSIIYIDEIDKISKK 143

Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           TD  SGKDVSGEGVQQS+LKLIEG+ LSI SL EKKN   + Q+FNIDTTNILFI GGAF
Sbjct: 144 TDFFSGKDVSGEGVQQSMLKLIEGITLSIPSLVEKKN---SQQIFNIDTTNILFIVGGAF 200

Query: 181 SGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           SGIE+ I  RINQE NF++K     ++I  T++EDLINFGIIP
Sbjct: 201 SGIESIINFRINQELNFIKKNFELTDIINYTSSEDLINFGIIP 243

Source: Candidatus Carsonella ruddii PV

Species: Candidatus Carsonella ruddii

Genus: Candidatus Carsonella

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|400404573|ref|YP_006587548.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii HT isolate Thao2000] gi|400363049|gb|AFP84119.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii HT isolate Thao2000]

 Score =  338 bits (868), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 178/223 (79%), Positives = 204/223 (91%), Gaps = 1/223 (0%)

Query: 1   MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
           +ELDR+I+GQHETKKI+SV VYNHYK+L+LLK K I+LEKSNILL+GPTGCGKTL+VKTL
Sbjct: 22  IELDRYIVGQHETKKIISVSVYNHYKKLYLLKKKGIFLEKSNILLIGPTGCGKTLIVKTL 81

Query: 61  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
           AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDY+V+LAE+SIIYIDEIDKISKK
Sbjct: 82  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYNVDLAEKSIIYIDEIDKISKK 141

Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
            D+ SGKDVSGEGVQQSLLKLIEGVNL+I SL +KKN  QN Q FN+DTTNILFI GGAF
Sbjct: 142 LDIGSGKDVSGEGVQQSLLKLIEGVNLTINSLLDKKN-QQNNQTFNLDTTNILFITGGAF 200

Query: 181 SGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           SGIENF+ +RI++ET F++K  +N NL+ +T +EDLINFGIIP
Sbjct: 201 SGIENFVFDRISKETTFIDKAVDNDNLLFKTTSEDLINFGIIP 243

Source: Candidatus Carsonella ruddii HT isolate Thao2000

Species: Candidatus Carsonella ruddii

Genus: Candidatus Carsonella

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|400403869|ref|YP_006586985.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii CE isolate Thao2000] gi|400362484|gb|AFP83557.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii CE isolate Thao2000]

 Score =  332 bits (852), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 167/223 (74%), Positives = 197/223 (88%), Gaps = 1/223 (0%)

Query: 1   MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
           +ELD++I+GQ ETKKI+SV VYNHYKRL+L+  K   L+KSNIL +GPTG GKTLMVKTL
Sbjct: 15  LELDKYIVGQSETKKILSVSVYNHYKRLYLINKKKYILDKSNILFIGPTGSGKTLMVKTL 74

Query: 61  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
           AKIINVPII+VDATSFTEAGYVG+DVE+IIQKLLHECDY+VELAE+SIIYIDEIDKISKK
Sbjct: 75  AKIINVPIIIVDATSFTEAGYVGEDVETIIQKLLHECDYNVELAEKSIIYIDEIDKISKK 134

Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
            D+ SGKDVSGEGVQQSLLKLIEGVN++IT + EKK  +Q   +FNI+T+NILFI GGAF
Sbjct: 135 NDLFSGKDVSGEGVQQSLLKLIEGVNINITPINEKK-INQQQVIFNINTSNILFIVGGAF 193

Query: 181 SGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           SGIENFI NRIN+E +F++K+N + N+I  TN +DLINFGIIP
Sbjct: 194 SGIENFINNRINKELSFIKKINKDTNIIKYTNNQDLINFGIIP 236

Source: Candidatus Carsonella ruddii CE isolate Thao2000

Species: Candidatus Carsonella ruddii

Genus: Candidatus Carsonella

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|400404796|ref|YP_006587728.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii PC isolate NHV] gi|400363231|gb|AFP84300.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii PC isolate NHV]

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 168/223 (75%), Positives = 195/223 (87%), Gaps = 3/223 (1%)

Query: 1   MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
           +ELDR+IIGQ+ETK+I+SV VYNHYKRL+L+K+K I LEKSNI+L+GPTGCGKTLMVKTL
Sbjct: 24  IELDRYIIGQNETKEIISVAVYNHYKRLYLIKNKKILLEKSNIILIGPTGCGKTLMVKTL 83

Query: 61  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
           AKI+NVPII VDATSFTEAGYVGDDVESIIQKLLHEC+Y+VEL E+SIIYIDEIDKISKK
Sbjct: 84  AKIVNVPIICVDATSFTEAGYVGDDVESIIQKLLHECNYNVELTEKSIIYIDEIDKISKK 143

Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           TD  SGKDVSGEGVQQS+LKLIEGV L++  L E+KN     Q+F++DTTNILFI GGAF
Sbjct: 144 TDFFSGKDVSGEGVQQSMLKLIEGVILNVPPLIERKNLQ---QIFSVDTTNILFIVGGAF 200

Query: 181 SGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           SGIE+ I  RINQE NF++K     N+I  TN++DLINFGIIP
Sbjct: 201 SGIESIINYRINQELNFIKKNFELLNIINYTNSDDLINFGIIP 243

Source: Candidatus Carsonella ruddii PC isolate NHV

Species: Candidatus Carsonella ruddii

Genus: Candidatus Carsonella

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|400404107|ref|YP_006587175.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii CS isolate Thao2000] gi|400362675|gb|AFP83747.1| ATP-dependent Clp protease ATP-binding subunit [Candidatus Carsonella ruddii CS isolate Thao2000]

 Score =  320 bits (819), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 171/223 (76%), Positives = 195/223 (87%), Gaps = 1/223 (0%)

Query: 1   MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
           +ELD++IIGQ ETKKI+SV VYNHYKRL+L+  K   L+KSNIL +GPTG GKTLMVKTL
Sbjct: 15  LELDKYIIGQSETKKILSVSVYNHYKRLYLINKKKYILDKSNILFIGPTGSGKTLMVKTL 74

Query: 61  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
           AKIINVPII+VDATSFTEAGYVG+DVE+IIQKLLHECDY+VELAE+SIIYIDEIDKISKK
Sbjct: 75  AKIINVPIIIVDATSFTEAGYVGEDVETIIQKLLHECDYNVELAEKSIIYIDEIDKISKK 134

Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
            D  SGKDVSGEGVQQSLLKLIEGVN++IT + EKK  +Q   +FNI+T NILFI GGAF
Sbjct: 135 NDFFSGKDVSGEGVQQSLLKLIEGVNINITPINEKK-INQQQIIFNINTNNILFIVGGAF 193

Query: 181 SGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           SGIENFI NRIN+E +F++K+N N NLI  TN EDLINFGIIP
Sbjct: 194 SGIENFINNRINKELSFIKKINKNVNLINYTNNEDLINFGIIP 236

Source: Candidatus Carsonella ruddii CS isolate Thao2000

Species: Candidatus Carsonella ruddii

Genus: Candidatus Carsonella

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|406708291|ref|YP_006758643.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [alpha proteobacterium HIMB59] gi|406654067|gb|AFS49466.1| endopeptidase Clp ATP-binding regulatory subunit ClpX [alpha proteobacterium HIMB59]

 Score =  245 bits (626), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 124/225 (55%), Positives = 165/225 (73%), Gaps = 5/225 (2%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK 62
           LD HIIGQ   KKI+SV VYNHYKR+    SK+I + KSNILL+GPTGCGKTL+ +TLAK
Sbjct: 75  LDDHIIGQDHAKKILSVSVYNHYKRV-QNPSKDIEISKSNILLIGPTGCGKTLLAQTLAK 133

Query: 63  IINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTD 122
            +NVP  + DAT+ TEAGYVG+DVE+II +LL +CDYDV LA++ I+YIDEIDK+ +K++
Sbjct: 134 FLNVPFTIADATTLTEAGYVGEDVENIILRLLQQCDYDVSLAQKGIVYIDEIDKVGRKSE 193

Query: 123 VVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFS 181
             S  +DVSGEGVQQ+LLK+IEG   S+     +K+P Q  +   +DT NILF+ GGAF 
Sbjct: 194 NPSITRDVSGEGVQQALLKIIEGTTASVPPQGGRKHPQQ--EFLQVDTKNILFVCGGAFE 251

Query: 182 GIENFIINRINQET-NFLEKLNNNYNLICETNTEDLINFGIIPVL 225
           GI+  I NRIN+++  F + +N +  +  +   +DLI FG+IP L
Sbjct: 252 GIDKIIKNRINKKSIGFNKSINQDVPMTSQLENDDLIKFGLIPEL 296

Source: alpha proteobacterium HIMB59

Species: alpha proteobacterium HIMB59

Class: Alphaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|291614262|ref|YP_003524419.1| ATP-dependent Clp protease ATP-binding protein ClpX [Sideroxydans lithotrophicus ES-1] gi|291584374|gb|ADE12032.1| ATP-dependent Clp protease, ATP-binding subunit ClpX [Sideroxydans lithotrophicus ES-1]

 Score =  244 bits (622), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 127/230 (55%), Positives = 162/230 (70%), Gaps = 10/230 (4%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
            LD ++IGQ + KKI+SV VYNHYKRL    +  + L KSNILLVGPTG GKTL+ +TLA
Sbjct: 74  RLDEYVIGQRQAKKILSVAVYNHYKRLKSTDADGVELAKSNILLVGPTGSGKTLLAQTLA 133

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  CDYDVE A++ I+YIDEIDKIS+K+
Sbjct: 134 RLLNVPFVMADATTLTEAGYVGEDVENIIQKLLQACDYDVERAQRGIVYIDEIDKISRKS 193

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   SI     +K+P  N +   +DT+NILFI GGAF
Sbjct: 194 DNPSITRDVSGEGVQQALLKLIEGTKASIPPQGGRKHP--NTEFLQVDTSNILFICGGAF 251

Query: 181 SGIENFIINR-----INQETNFLEKLNNN--YNLICETNTEDLINFGIIP 223
            G+E  I NR     I    N  ++  +N    ++     EDLI FG+IP
Sbjct: 252 DGLEKVIRNRSEKAGIGFSANLAKRDESNDIGKVLRGVEPEDLIKFGLIP 301

Source: Sideroxydans lithotrophicus ES-1

Species: Sideroxydans lithotrophicus

Genus: Sideroxydans

Family: Gallionellaceae

Order: Gallionellales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|73541075|ref|YP_295595.1| ATP-dependent protease ATP-binding subunit ClpX [Ralstonia eutropha JMP134] gi|123760219|sp|Q472D2.1|CLPX_RALEJ RecName: Full=ATP-dependent Clp protease ATP-binding subunit ClpX gi|72118488|gb|AAZ60751.1| ATP-dependent Clp protease ATP-binding subunit ClpX [Ralstonia eutropha JMP134]

 Score =  243 bits (620), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 124/231 (53%), Positives = 169/231 (73%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ + KKI++V VYNHYKRL  L K  ++ L KSNILL+GPTG GKTL+ +TLA
Sbjct: 77  LDQYVIGQEQAKKILAVAVYNHYKRLKHLGKKDDVELSKSNILLIGPTGSGKTLLAQTLA 136

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+Y+VE A++ I+YIDEIDKIS+K+
Sbjct: 137 RLLNVPFVIADATTLTEAGYVGEDVENIIQKLLQNCNYEVEKAQRGIVYIDEIDKISRKS 196

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   S+     +K+P+Q+     +DTTNILFI GGAF
Sbjct: 197 DNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQD--FLQVDTTNILFICGGAF 254

Query: 181 SGIENFIINRINQE-TNFLEKLNNN-----YNLICETNTEDLINFGIIPVL 225
            G+E  I+ R ++    F  ++ +        ++ +T  EDLI FG+IP L
Sbjct: 255 DGLEKVIMQRSDKTGIGFAAQVQSKEEREVSEVLPQTEPEDLIKFGLIPEL 305

Source: Ralstonia eutropha JMP134

Species: Cupriavidus pinatubonensis

Genus: Cupriavidus

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|395762550|ref|ZP_10443219.1| ATP-dependent protease ATP-binding subunit ClpX [Janthinobacterium lividum PAMC 25724]

 Score =  243 bits (620), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 126/231 (54%), Positives = 165/231 (71%), Gaps = 10/231 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD+++IGQ   K+I+SV VYNHYKRL  L K  +I L KSNILLVGPTG GKTL+ +TLA
Sbjct: 75  LDQYVIGQQTAKRILSVAVYNHYKRLKHLGKKDDIELAKSNILLVGPTGSGKTLLAQTLA 134

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           +++NVP ++ DAT+ TEAGYVG+DVE+IIQKLL  C+YDVE A++ I+YIDEIDKIS+K+
Sbjct: 135 RMLNVPFVIADATTLTEAGYVGEDVENIIQKLLQSCNYDVEKAQRGIVYIDEIDKISRKS 194

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   S+     +K+P+Q+     IDTTNI+FI GGAF
Sbjct: 195 DNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQD--FVQIDTTNIMFICGGAF 252

Query: 181 SGIENFIINRINQE------TNFLEKLNNNYNLICETNTEDLINFGIIPVL 225
            G+   I NR  +       T   +  ++   L+ +   EDL+ FG+IP L
Sbjct: 253 DGLSKVIANRSEKSGIGFSATVRSKSQSSASELMLQAEPEDLVKFGLIPEL 303

Source: Janthinobacterium lividum PAMC 25724

Species: Janthinobacterium lividum

Genus: Janthinobacterium

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	225
TIGR_CMR|NSE_0753	400	NSE_0753 "ATP-dependent Clp pr	0.964	0.542	0.530	4.2e-56
TIGR_CMR|CHY_0326	418	CHY_0326 "ATP-dependent Clp pr	0.973	0.523	0.519	2.9e-55
TIGR_CMR|CBU_0739	422	CBU_0739 "ATP-dependent Clp pr	0.973	0.518	0.528	6.1e-55
TIGR_CMR|BA_4704	419	BA_4704 "ATP-dependent Clp pro	0.973	0.522	0.526	9.9e-55
TIGR_CMR|GSU_1791	417	GSU_1791 "ATP-dependent Clp pr	0.973	0.525	0.510	9.9e-55
UNIPROTKB|P0A6H1	424	clpX "ClpX" [Escherichia coli	0.973	0.516	0.506	1.6e-54
TIGR_CMR|ECH_0900	406	ECH_0900 "ATP-dependent Clp pr	0.968	0.536	0.495	4.3e-54
TIGR_CMR|SO_1795	426	SO_1795 "ATP-dependent Clp pro	0.973	0.514	0.519	5.5e-54
UNIPROTKB|Q9KQS7	426	clpX "ATP-dependent Clp protea	0.973	0.514	0.504	8.9e-54
TIGR_CMR|CJE_0324	407	CJE_0324 "ATP-dependent Clp pr	0.982	0.542	0.508	8.9e-54

TIGR_CMR|NSE_0753 NSE_0753 "ATP-dependent Clp protease, ATP-binding subunit ClpX" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 121/228 (53%), Positives = 160/228 (70%)

Query:     4 DRHIIGQHETKKIVSVGVYNHYKRLFL---LKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
             D  I  Q + KKI+SV VYNHYK  F+   L SK++ + KSNIL++GPTGCGKTL  KTL
Sbjct:    68 DSFITAQEDAKKILSVAVYNHYK-CFVGNRLNSKDVEITKSNILIIGPTGCGKTLFAKTL 126

Query:    61 AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
             A+ +NVP  + DATS TEAGYVGDDVE+I++ LL   DY+VE A++ I+YIDEIDKIS+K
Sbjct:   127 ARFLNVPFAICDATSITEAGYVGDDVENILRMLLQSADYNVEAAQKGIVYIDEIDKISRK 186

Query:   121 TDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA 179
             +D  S  +DVSGEGVQQ+LLK++EG   S+     +K+P+Q  +   IDTTNILFI GGA
Sbjct:   187 SDSPSITRDVSGEGVQQALLKIMEGTIASVPPQGGRKHPNQ--ETIQIDTTNILFICGGA 244

Query:   180 FSGIENFIINRINQET-NFLEKLNNNY---NLICETNTEDLINFGIIP 223
             F G++N I NR +  T  F  +L +      ++ +   EDL+ FG+IP
Sbjct:   245 FVGLDNIIANRQSINTMGFKSELQSKEVSPTILKKVEPEDLVKFGMIP 292

GO:0005524 "ATP binding" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

TIGR_CMR|CHY_0326 CHY_0326 "ATP-dependent Clp protease, ATP-binding subunit ClpX" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 119/229 (51%), Positives = 160/229 (69%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLFLL-KSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
             LD+++IGQ E KK+++V VYNHYKR+ L  K  ++ L KSNIL++GPTG GKTL+ +TLA
Sbjct:    67 LDQYVIGQEEAKKVLAVAVYNHYKRINLGGKIDDVELSKSNILMLGPTGSGKTLLAQTLA 126

Query:    62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
             + +NVP  + DAT+ TEAGYVG+DVE+I+ KL+   DYD+E AE+ I+YIDEIDKI++K+
Sbjct:   127 RFLNVPFAIADATALTEAGYVGEDVENILLKLIQNADYDIERAEKGIVYIDEIDKIARKS 186

Query:   122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
             +  S  +DVSGEGVQQ+LLK++EG   S+     +K+P Q  +   IDTTNILFI GGAF
Sbjct:   187 ENPSITRDVSGEGVQQALLKILEGTIASVPPQGGRKHPHQ--EFIQIDTTNILFIVGGAF 244

Query:   181 SGIENFIINRINQE-----TNFLEKLNNNYNLICE-TNTEDLINFGIIP 223
              GIE  I NRI ++          K   N   I +    EDL+ FG+IP
Sbjct:   245 EGIEKIIQNRIGKKGLGFGAEIKPKREQNVGEILKHIMPEDLLKFGLIP 293

GO:0005524 "ATP binding" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=ISS

TIGR_CMR|CBU_0739 CBU_0739 "ATP-dependent Clp protease, ATP-binding subunit ClpX" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 122/231 (52%), Positives = 162/231 (70%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLF-LLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
             LD ++IGQ   KK++SV VYNHYKRL    K  ++ + KSNILL+GPTG GKTL+ +TLA
Sbjct:    70 LDEYVIGQEFAKKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLA 129

Query:    62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
             KI++VP  + DAT+ TEAGYVG+DVE+IIQKLL +C+YDVE A+  IIYIDEIDKI++KT
Sbjct:   130 KILDVPFAIADATTLTEAGYVGEDVENIIQKLLQKCNYDVEKAKTGIIYIDEIDKIARKT 189

Query:   122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
             D  S  +DVSGEGVQQ+LLKLIEG   SI     +K+P Q  +   +DT+NILFI GGAF
Sbjct:   190 DSPSLTRDVSGEGVQQALLKLIEGTVASIPPQGGRKHPQQ--EYLQVDTSNILFICGGAF 247

Query:   181 SGIENFIINRINQE-TNFLEKLN--NNYN-----LICETNTEDLINFGIIP 223
             + +   I  R ++    F  ++    +++     LI +T   DLI +G+IP
Sbjct:   248 ADLHKIIQRRTDKSGIGFAAEVRPKEDFSREASKLIKQTEPGDLIKYGLIP 298

GO:0005524 "ATP binding" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|BA_4704 BA_4704 "ATP-dependent Clp protease, ATP-binding subunit ClpX" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 120/228 (52%), Positives = 159/228 (69%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLFL-LKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
             LD ++IGQ   KK ++V VYNHYKR+    K  ++ L KSNI L+GPTG GKTL+ +TLA
Sbjct:    71 LDEYVIGQDNAKKALAVAVYNHYKRINSNSKIDDVELAKSNIALIGPTGSGKTLLAQTLA 130

Query:    62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
             +I+NVP  + DATS TEAGYVG+DVE+I+ KL+   DYDVE AE+ IIYIDEIDK+++K+
Sbjct:   131 RILNVPFAIADATSLTEAGYVGEDVENILLKLIQAADYDVEKAEKGIIYIDEIDKVARKS 190

Query:   122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
             +  S  +DVSGEGVQQ+LLK++EG   S+     +K+P Q  +   IDTTNILFI GGAF
Sbjct:   191 ENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPHQ--EFIQIDTTNILFICGGAF 248

Query:   181 SGIENFIINRINQET-NF-LEKLN---NNYNLICETNTEDLINFGIIP 223
              GIE  I  R+ ++   F  EK N   N  +++     EDL+ FG+IP
Sbjct:   249 DGIEPIIKRRLGEKVIGFGSEKKNADVNEKHVLSHVLPEDLLRFGLIP 296

GO:0006508 "proteolysis" evidence=ISS

TIGR_CMR|GSU_1791 GSU_1791 "ATP-dependent Clp protease, ATP-binding subunit ClpX" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 117/229 (51%), Positives = 161/229 (70%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLFLL-KSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
             LD ++IGQ + KK+++V VYNHYKR+  + K  ++ ++KSNILL+GPTG GKTL+ +TLA
Sbjct:    73 LDEYVIGQDQAKKVLAVAVYNHYKRIESMGKPSDVEMQKSNILLLGPTGSGKTLLAQTLA 132

Query:    62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
             +I+ VP  + DAT+ TEAGYVG+DVE+II  LL   DYDVE A++ IIYIDEIDKI++K+
Sbjct:   133 RILKVPFAMADATNLTEAGYVGEDVENIILNLLQAADYDVERAQKGIIYIDEIDKIARKS 192

Query:   122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
             D  S  +DVSGEGVQQ+LLK+IEG   S+     +K+P Q  +   +DTTNILFI GGAF
Sbjct:   193 DSPSITRDVSGEGVQQALLKIIEGTVASVPPKGGRKHPQQ--EFLKVDTTNILFICGGAF 250

Query:   181 SGIENFIINRIN-QETNFLEKLNNNYN-----LICETNTEDLINFGIIP 223
             +G+++ I  RI  ++  F   + +        L+ E   EDL+ FG IP
Sbjct:   251 AGLDSIIQQRIGVKKLGFGADVKSKVEKRAGELLTEVTPEDLLKFGFIP 299

GO:0005524 "ATP binding" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

UNIPROTKB|P0A6H1 clpX "ClpX" [Escherichia coli K-12 (taxid:83333)]

 Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
 Identities = 117/231 (50%), Positives = 163/231 (70%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKN-IYLEKSNILLVGPTGCGKTLMVKTLA 61
             LD ++IGQ + KK+++V VYNHYKRL    + N + L KSNILL+GPTG GKTL+ +TLA
Sbjct:    74 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 133

Query:    62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
             ++++VP  + DAT+ TEAGYVG+DVE+IIQKLL +CDYDV+ A++ I+YIDEIDKIS+K+
Sbjct:   134 RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKS 193

Query:   122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
             D  S  +DVSGEGVQQ+LLKLIEG   ++     +K+P Q  +   +DT+ ILFI GGAF
Sbjct:   194 DNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ--EFLQVDTSKILFICGGAF 251

Query:   181 SGIENFIINRINQETNF----LEKLNNNY----NLICETNTEDLINFGIIP 223
             +G++  I +R+   +        K  ++      L+ +   EDLI FG+IP
Sbjct:   252 AGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 302

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;IDA

TIGR_CMR|ECH_0900 ECH_0900 "ATP-dependent Clp protease, ATP-binding subunit ClpX" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 559 (201.8 bits), Expect = 4.3e-54, P = 4.3e-54
 Identities = 113/228 (49%), Positives = 162/228 (71%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKS-KNIYLEKSNILLVGPTGCGKTLMVKTLA 61
             LD ++IGQ  +KK++SV VYNHYKRL  L     + + KSN+LL+GPTG GKTL+ +TLA
Sbjct:    68 LDEYVIGQEHSKKVLSVAVYNHYKRLSNLSVISEVEISKSNVLLIGPTGSGKTLLARTLA 127

Query:    62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
             +++ VP  + DAT+ TEAGYVG+DVE+I+ KLL   +++V+ A++ IIYIDE+DKIS+K+
Sbjct:   128 RVLQVPFAMADATTLTEAGYVGEDVENILLKLLQAANFNVDAAQRGIIYIDEVDKISRKS 187

Query:   122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
             +  S  +DVSGEGVQQ+LLK+IEG   S+     +K+P Q  +   I+T NILFI GGAF
Sbjct:   188 ENTSITRDVSGEGVQQALLKVIEGTVSSVPPQGGRKHPHQ--EFIQINTDNILFIFGGAF 245

Query:   181 SGIENFIINR-----INQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
              G++  I +R     +  E N ++K++ N ++ C T  EDL+ FG+IP
Sbjct:   246 DGLDKIIESRHRGSSMGFEAN-VQKVSKNKDIFCYTEPEDLVKFGLIP 292

GO:0005524 "ATP binding" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

TIGR_CMR|SO_1795 SO_1795 "ATP-dependent Clp protease, ATP-binding subunit ClpX" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 120/231 (51%), Positives = 161/231 (69%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKN-IYLEKSNILLVGPTGCGKTLMVKTLA 61
             LD ++IGQ   KK++SV VYNHYKRL     K+ + L KSNILL+GPTG GKTL+ +TLA
Sbjct:    75 LDDYVIGQDRAKKVLSVAVYNHYKRLKNSSPKDGVELGKSNILLIGPTGSGKTLLAETLA 134

Query:    62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
             + +NVP  + DAT+ TEAGYVG+DVE+IIQKLL +CDYDVE A++ I+YIDEIDKIS+K+
Sbjct:   135 RSLNVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVEKAQRGIVYIDEIDKISRKS 194

Query:   122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
             D  S  +DVSGEGVQQ+LLKLIEG   ++     +K+P Q  +   +DT+ ILFI GGAF
Sbjct:   195 DNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ--EFLQVDTSKILFICGGAF 252

Query:   181 SGIENFIINR--INQETNFLEKLNNNYN--LICETNTE----DLINFGIIP 223
             +G+E  I  R  +     F  ++    +   I ET ++    DL+ +G+IP
Sbjct:   253 AGLEKVIEQRAHVGSGIGFGAQVKGEKDKATISETLSQVEPGDLVKYGLIP 303

GO:0004176 "ATP-dependent peptidase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

UNIPROTKB|Q9KQS7 clpX "ATP-dependent Clp protease ATP-binding subunit ClpX" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 117/232 (50%), Positives = 160/232 (68%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLFL--LKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
             LD ++IGQ   KK+++V VYNHYKRL      S+ + L KSNILL+GPTG GKTL+ +TL
Sbjct:    75 LDDYVIGQEHAKKVLAVAVYNHYKRLRNGDTTSEGVELGKSNILLIGPTGSGKTLLAETL 134

Query:    61 AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
             A++++VP  + DAT+ TEAGYVG+DVE+IIQKLL +CDYDV  AE+ I+YIDEIDKIS+K
Sbjct:   135 ARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVAKAERGIVYIDEIDKISRK 194

Query:   121 TDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA 179
             ++  S  +DVSGEGVQQ+LLKLIEG   S+     +K+P Q  +   +DT+ ILFI GGA
Sbjct:   195 SENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQ--EFLQVDTSKILFICGGA 252

Query:   180 FSGIENFIINRINQETNF-----LEKLNNNYNL---ICETNTEDLINFGIIP 223
             F+G++  I  R+   T       +   +N+  L     +   EDL+ +G+IP
Sbjct:   253 FAGLDKVIEQRVATGTGIGFGADVRSKDNSKTLSELFTQVEPEDLVKYGLIP 304

GO:0006508 "proteolysis" evidence=ISS

GO:0008233 "peptidase activity" evidence=ISS

TIGR_CMR|CJE_0324 CJE_0324 "ATP-dependent Clp protease, ATP-binding subunit ClpX" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
 Identities = 116/228 (50%), Positives = 162/228 (71%)

Query:     3 LDRHIIGQHETKKIVSVGVYNHYKRLFL--LKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
             LDR++IGQ   KK+ SVGVYNHYKRLF   L+  +  L KSNILLVGPTG GKTL+ +TL
Sbjct:    70 LDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQDDDTELFKSNILLVGPTGSGKTLLAQTL 129

Query:    61 AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
             AK ++VPI + DATS TEAGYVG+DVE+I+ +LL   D DV+ A++ I++IDEIDKI++ 
Sbjct:   130 AKFLDVPIAICDATSLTEAGYVGEDVENILTRLLQAADGDVQRAQKGIVFIDEIDKIARM 189

Query:   121 TDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA 179
             ++  S  +DVSGEGVQQ+LLK+IEG  ++I     +K+P+Q  +   IDT+NILF+ GGA
Sbjct:   190 SENRSITRDVSGEGVQQALLKIIEGSLVNIPPKGGRKHPNQ--EFIQIDTSNILFVCGGA 247

Query:   180 FSGIENFIINRINQET-NFLEKLNN-NYNLICETNTEDLINFGIIPVL 225
             F G+E  +  ++  +   F +     N  L+ +   +DL++FG+IP L
Sbjct:   248 FDGLETILKRKLGDKVVGFFDDAKEENKALLEKIEPDDLVHFGLIPEL 295

GO:0005524 "ATP binding" evidence=ISS

GO:0009368 "endopeptidase Clp complex" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4EBM2	CLPX_BURCJ	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
A3NWA5	CLPX_BURP0	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
B7VB75	CLPX_PSEA8	No assigned EC number	0.5391	0.9733	0.5140	yes	N/A
Q4ZVM6	CLPX_PSEU2	No assigned EC number	0.5411	0.9733	0.5128	yes	N/A
Q3K9X0	CLPX_PSEPF	No assigned EC number	0.5367	0.9733	0.5128	yes	N/A
A4JF04	CLPX_BURVG	No assigned EC number	0.5281	0.9822	0.5224	yes	N/A
A5ID16	CLPX_LEGPC	No assigned EC number	0.5217	0.9733	0.5165	yes	N/A
Q7VXI6	CLPX_BORPE	No assigned EC number	0.5258	0.9822	0.5092	yes	N/A
B2T404	CLPX_BURPP	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
Q47FB7	CLPX_DECAR	No assigned EC number	0.5364	0.9822	0.5261	yes	N/A
Q1LM63	CLPX_RALME	No assigned EC number	0.5367	0.9822	0.52	yes	N/A
Q7W8X1	CLPX_BORPA	No assigned EC number	0.5258	0.9822	0.5092	yes	N/A
A6V718	CLPX_PSEA7	No assigned EC number	0.5391	0.9733	0.5140	yes	N/A
A9AJR1	CLPX_BURM1	No assigned EC number	0.5238	0.9822	0.5224	yes	N/A
Q88KI9	CLPX_PSEPK	No assigned EC number	0.5324	0.9733	0.4954	yes	N/A
Q12BY1	CLPX_POLSJ	No assigned EC number	0.5407	0.9822	0.5249	yes	N/A
A5W634	CLPX_PSEP1	No assigned EC number	0.5324	0.9733	0.5128	yes	N/A
Q1BH84	CLPX_BURCA	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
Q13Z14	CLPX_BURXL	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
Q39FE9	CLPX_BURS3	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
A1V4X0	CLPX_BURMS	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
Q62JK8	CLPX_BURMA	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
B3R4W2	CLPX_CUPTR	No assigned EC number	0.5367	0.9822	0.52	yes	N/A
Q63V40	CLPX_BURPS	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
Q02KU5	CLPX_PSEAB	No assigned EC number	0.5391	0.9733	0.5140	yes	N/A
Q3SI99	CLPX_THIDA	No assigned EC number	0.5260	0.9733	0.5177	yes	N/A
Q48KY9	CLPX_PSE14	No assigned EC number	0.5367	0.9733	0.5128	yes	N/A
B1YRZ4	CLPX_BURA4	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
B0KJG7	CLPX_PSEPG	No assigned EC number	0.5324	0.9733	0.5128	yes	N/A
Q0BEF7	CLPX_BURCM	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
Q5ZUE0	CLPX_LEGPH	No assigned EC number	0.5217	0.9733	0.5165	yes	N/A
Q5X452	CLPX_LEGPA	No assigned EC number	0.5217	0.9733	0.5165	yes	N/A
Q7WK82	CLPX_BORBR	No assigned EC number	0.5258	0.9822	0.5092	yes	N/A
Q472D2	CLPX_CUPPJ	No assigned EC number	0.5367	0.9822	0.52	yes	N/A
Q2SWQ5	CLPX_BURTA	No assigned EC number	0.5281	0.9822	0.5224	yes	N/A
Q0KBK3	CLPX_CUPNH	No assigned EC number	0.5367	0.9822	0.52	yes	N/A
Q8XYP6	CLPX_RALSO	No assigned EC number	0.5344	0.9777	0.5188	yes	N/A
B1JTU9	CLPX_BURCC	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
Q9I2U0	CLPX_PSEAE	No assigned EC number	0.5391	0.9733	0.5140	yes	N/A
B2UFQ3	CLPX_RALPJ	No assigned EC number	0.5258	0.9777	0.5188	yes	N/A
A0K846	CLPX_BURCH	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
A3MKJ7	CLPX_BURM7	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
B1J693	CLPX_PSEPW	No assigned EC number	0.5367	0.9733	0.5128	yes	N/A
A2SBG4	CLPX_BURM9	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
Q5WVJ1	CLPX_LEGPL	No assigned EC number	0.5217	0.9733	0.5165	yes	N/A
Q1QVW2	CLPX_CHRSD	No assigned EC number	0.5217	0.9733	0.5140	yes	N/A
Q87YR7	CLPX_PSESM	No assigned EC number	0.5411	0.9733	0.5128	yes	N/A
B2JGL6	CLPX_BURP8	No assigned EC number	0.5281	0.9822	0.5224	yes	N/A
A3NAI4	CLPX_BURP6	No assigned EC number	0.5324	0.9822	0.5224	yes	N/A
A4G5X0	CLPX_HERAR	No assigned EC number	0.5324	0.9822	0.5236	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	225
PRK05342	412	PRK05342, clpX, ATP-dependent protease ATP-binding	1e-110
COG1219	408	COG1219, ClpX, ATP-dependent protease Clp, ATPase	1e-101
TIGR00382	413	TIGR00382, clpX, endopeptidase Clp ATP-binding reg	9e-87
pfam07724	168	pfam07724, AAA_2, AAA domain (Cdc48 subfamily)	8e-27
COG1220	444	COG1220, HslU, ATP-dependent protease HslVU (ClpYQ	2e-26
PRK05201	443	PRK05201, hslU, ATP-dependent protease ATP-binding	5e-26
TIGR00390	441	TIGR00390, hslU, ATP-dependent protease HslVU, ATP	2e-24
pfam00004	131	pfam00004, AAA, ATPase family associated with vari	2e-16
PRK05201	443	PRK05201, hslU, ATP-dependent protease ATP-binding	1e-15
COG1220	444	COG1220, HslU, ATP-dependent protease HslVU (ClpYQ	1e-14
cd00009	151	cd00009, AAA, The AAA+ (ATPases Associated with a	6e-14
TIGR00390	441	TIGR00390, hslU, ATP-dependent protease HslVU, ATP	7e-11
COG0714	329	COG0714, COG0714, MoxR-like ATPases [General funct	9e-11
COG0464	494	COG0464, SpoVK, ATPases of the AAA+ class [Posttra	1e-10
TIGR01242	364	TIGR01242, 26Sp45, 26S proteasome subunit P45 fami	6e-10
COG1223	368	COG1223, COG1223, Predicted ATPase (AAA+ superfami	6e-10
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	3e-09
COG1222	406	COG1222, RPT1, ATP-dependent 26S proteasome regula	4e-08
PRK03992	389	PRK03992, PRK03992, proteasome-activating nucleoti	1e-06
smart00382	148	smart00382, AAA, ATPases associated with a variety	1e-06
PTZ00454	398	PTZ00454, PTZ00454, 26S protease regulatory subuni	2e-06
pfam07728	135	pfam07728, AAA_5, AAA domain (dynein-related subfa	5e-06
COG0542	786	COG0542, clpA, ATP-binding subunits of Clp proteas	6e-06
PRK10733	644	PRK10733, hflB, ATP-dependent metalloprotease; Rev	7e-06
CHL00176	638	CHL00176, ftsH, cell division protein; Validated	9e-06
TIGR01241	495	TIGR01241, FtsH_fam, ATP-dependent metalloprotease	4e-05
COG0542	786	COG0542, clpA, ATP-binding subunits of Clp proteas	7e-05
PTZ00361	438	PTZ00361, PTZ00361, 26 proteosome regulatory subun	8e-05
COG0324	308	COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosph	2e-04
TIGR02639	730	TIGR02639, ClpA, ATP-dependent Clp protease ATP-bi	3e-04
pfam13191	154	pfam13191, AAA_16, AAA ATPase domain	5e-04
COG2256	436	COG2256, MGS1, ATPase related to the helicase subu	0.001
PRK13342	413	PRK13342, PRK13342, recombination factor protein R	0.001
PRK00091	307	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosp	0.001
TIGR01243	733	TIGR01243, CDC48, AAA family ATPase, CDC48 subfami	0.002
pfam13401	124	pfam13401, AAA_22, AAA domain	0.002
pfam13207	114	pfam13207, AAA_17, AAA domain	0.002
COG0465	596	COG0465, HflB, ATP-dependent Zn proteases [Posttra	0.002

>gnl|CDD|235422 PRK05342, clpX, ATP-dependent protease ATP-binding subunit ClpX; Provisional

 Score =  323 bits (830), Expect = e-110
 Identities = 117/231 (50%), Positives = 159/231 (68%), Gaps = 12/231 (5%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKN--IYLEKSNILLVGPTGCGKTLMVKTL 60
           LD+++IGQ   KK++SV VYNHYKRL     K+  + L+KSNILL+GPTG GKTL+ +TL
Sbjct: 69  LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTL 128

Query: 61  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
           A+I++VP  + DAT+ TEAGYVG+DVE+I+ KLL   DYDVE A++ I+YIDEIDKI++K
Sbjct: 129 ARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARK 188

Query: 121 TDVVSG-KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA 179
           ++  S  +DVSGEGVQQ+LLK++EG   S+     +K+P Q  +   +DTTNILFI GGA
Sbjct: 189 SENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQ--EFIQVDTTNILFICGGA 246

Query: 180 FSGIENFIINRIN-------QETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           F G+E  I  R+         E    ++      L+ +   EDLI FG+IP
Sbjct: 247 FDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIP 297

Length = 412

>gnl|CDD|224140 COG1219, ClpX, ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  300 bits (770), Expect = e-101
 Identities = 120/230 (52%), Positives = 157/230 (68%), Gaps = 11/230 (4%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKN-IYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD ++IGQ + KK++SV VYNHYKRL   +  + + L KSNILL+GPTG GKTL+ +TLA
Sbjct: 59  LDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLA 118

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           KI+NVP  + DAT+ TEAGYVG+DVE+I+ KLL   DYDVE AE+ IIYIDEIDKI++K+
Sbjct: 119 KILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKS 178

Query: 122 DVVSG-KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           +  S  +DVSGEGVQQ+LLK+IEG   S+     +K+P Q      +DT+NILFI GGAF
Sbjct: 179 ENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQE--FIQVDTSNILFICGGAF 236

Query: 181 SGIENFIINRIN-------QETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           +G+E  I  R+         E     K      L+ +   EDL+ FG+IP
Sbjct: 237 AGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIP 286

Length = 408

>gnl|CDD|232949 TIGR00382, clpX, endopeptidase Clp ATP-binding regulatory subunit (clpX)

 Score =  262 bits (671), Expect = 9e-87
 Identities = 120/231 (51%), Positives = 160/231 (69%), Gaps = 12/231 (5%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSK----NIYLEKSNILLVGPTGCGKTLMVK 58
           LD ++IGQ + KK++SV VYNHYKRL   K+K     + L KSNILL+GPTG GKTL+ +
Sbjct: 75  LDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQ 134

Query: 59  TLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKIS 118
           TLA+I+NVP  + DAT+ TEAGYVG+DVE+I+ KLL   DYDVE A++ IIYIDEIDKIS
Sbjct: 135 TLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKIS 194

Query: 119 KKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG 177
           +K++  S  +DVSGEGVQQ+LLK+IEG   ++     +K+P Q      IDT+NILFI G
Sbjct: 195 RKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE--FIQIDTSNILFICG 252

Query: 178 GAFSGIENFIINRINQET-NFLEKLNNN----YNLICETNTEDLINFGIIP 223
           GAF G+E  I  R  + +  F  ++        +L+ +   EDL+ FG+IP
Sbjct: 253 GAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIP 303

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 413

>gnl|CDD|219536 pfam07724, AAA_2, AAA domain (Cdc48 subfamily)

 Score =  100 bits (252), Expect = 8e-27
 Identities = 48/200 (24%), Positives = 75/200 (37%), Gaps = 57/200 (28%)

Query: 39  EKSNILLVGPTGCGKTLMVKTLAKIINV---PIIVVDATSFTEAGYVGDDVESIIQKLLH 95
              + L +GPTG GKT + K LA+++      +I +D + + E        E  + +L+ 
Sbjct: 2   PIGSFLFLGPTGVGKTELAKALAELLFGDERALIRIDMSEYME--------EHSVSRLIG 53

Query: 96  ECDYDVELAE------------QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143
                V   E             SI+ IDEI+K                GVQ  LL+++E
Sbjct: 54  APPGYVGYEEGGQLTEAVRRKPYSIVLIDEIEKAHP-------------GVQNDLLQILE 100

Query: 144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN 203
           G  L+           Q  +V   D  N LFI  G F   +    +R+    ++      
Sbjct: 101 GGTLT---------DKQGRKV---DFRNTLFIMTGNFGSEKISDASRLGDSPDYELL--- 145

Query: 204 NYNLICETNTEDLINFGIIP 223
                 +    DL+  G IP
Sbjct: 146 ------KELVMDLLKKGFIP 159

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 168

>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  105 bits (263), Expect = 2e-26
 Identities = 47/92 (51%), Positives = 63/92 (68%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELDR+IIGQ E KK V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 12  ELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLA 71

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKL 93
           K+   P I V+AT FTE GYVG DVESII+ L
Sbjct: 72  KLAGAPFIKVEATKFTEVGYVGRDVESIIRDL 103

Length = 444

>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional

 Score =  104 bits (261), Expect = 5e-26
 Identities = 47/95 (49%), Positives = 66/95 (69%), Gaps = 6/95 (6%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLE---KSNILLVGPTGCGKTLMVK 58
           ELD++IIGQ + K+ V++ + N ++R+ L   + +  E   K NIL++GPTG GKT + +
Sbjct: 12  ELDKYIIGQDDAKRAVAIALRNRWRRMQL--PEELRDEVTPK-NILMIGPTGVGKTEIAR 68

Query: 59  TLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKL 93
            LAK+ N P I V+AT FTE GYVG DVESII+ L
Sbjct: 69  RLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDL 103

Length = 443

>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit

 Score = 99.9 bits (249), Expect = 2e-24
 Identities = 46/92 (50%), Positives = 63/92 (68%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD++IIGQ E KK V++ + N Y+R  L +     +   NIL++GPTG GKT + + LA
Sbjct: 9   ELDKYIIGQDEAKKSVAIALRNRYRRSQLPEELKDEVTPKNILMIGPTGVGKTEIARRLA 68

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKL 93
           K+ N P I V+AT FTE GYVG DVES+++ L
Sbjct: 69  KLANAPFIKVEATKFTEVGYVGRDVESMVRDL 100

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in MEDLINE:98389714, is Ser in other members of the seed alignment [Protein fate, Protein folding and stabilization]. Length = 441

>gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA)

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 14/106 (13%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKT + K +AK +  P I +  +      YVG+  + + +          E
Sbjct: 1   LLLYGPPGTGKTTLAKAVAKELGAPFIEISGSELVS-KYVGESEKRLRELF--------E 51

Query: 103 LAEQ---SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145
            A++    +I+IDEID ++      SG D     V   LL  ++G 
Sbjct: 52  AAKKLAPCVIFIDEIDALAGSRG--SGGDSESRRVVNQLLTELDGF 95

AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131

>gnl|CDD|235364 PRK05201, hslU, ATP-dependent protease ATP-binding subunit HslU; Provisional

 Score = 74.3 bits (184), Expect = 1e-15
 Identities = 38/97 (39%), Positives = 54/97 (55%), Gaps = 24/97 (24%)

Query: 91  QKLLHECDYD------VELAEQS-IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143
            KL+   D +      +E  EQ+ I++IDEIDKI+ +    SG DVS EGVQ+ LL L+E
Sbjct: 231 AKLI---DMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVE 286

Query: 144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           G     ++++ K           + T +ILFIA GAF
Sbjct: 287 G-----STVSTKYGM--------VKTDHILFIASGAF 310

Length = 443

>gnl|CDD|224141 COG1220, HslU, ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 40/97 (41%), Positives = 56/97 (57%), Gaps = 22/97 (22%)

Query: 85  DVESIIQKLLHECDYDVELAEQS-IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143
           D E I Q+ +       + AEQ+ I++IDEIDKI+K+     G DVS EGVQ+ LL L+E
Sbjct: 236 DQEEIKQEAI-------DAAEQNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVE 287

Query: 144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           G     ++++ K  P        + T +ILFIA GAF
Sbjct: 288 G-----STVSTKYGP--------VKTDHILFIASGAF 311

Length = 444

>gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

 Score = 66.4 bits (162), Expect = 6e-14
 Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 19/118 (16%)

Query: 40  KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHE 96
             N+LL GP G GKT + + +A  +     P + ++A+   E   V +     + +LL E
Sbjct: 19  PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78

Query: 97  CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154
                E A+  +++IDEID +S              G Q +LL+++E +N        
Sbjct: 79  ---LAEKAKPGVLFIDEIDSLS-------------RGAQNALLRVLETLNDLRIDREN 120

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151

>gnl|CDD|213527 TIGR00390, hslU, ATP-dependent protease HslVU, ATPase subunit

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 39/81 (48%), Positives = 49/81 (60%), Gaps = 15/81 (18%)

Query: 101 VELAEQS-IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159
           ++  EQS II+IDEIDKI+KK +  SG DVS EGVQ+ LL ++EG      S    K  S
Sbjct: 242 IDRVEQSGIIFIDEIDKIAKKGES-SGADVSREGVQRDLLPIVEG------STVNTKYGS 294

Query: 160 QNPQVFNIDTTNILFIAGGAF 180
                  + T +ILFIA GAF
Sbjct: 295 -------VKTDHILFIAAGAF 308

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in MEDLINE:98389714, is Ser in other members of the seed alignment [Protein fate, Protein folding and stabilization]. Length = 441

>gnl|CDD|223786 COG0714, COG0714, MoxR-like ATPases [General function prediction only]

 Score = 60.1 bits (146), Expect = 9e-11
 Identities = 23/129 (17%), Positives = 48/129 (37%), Gaps = 28/129 (21%)

Query: 1   MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
            EL++ ++G  E  ++  + +                L   ++LL GP G GKTL+ + L
Sbjct: 20  SELEKVVVGDEEVIELALLAL----------------LAGGHVLLEGPPGVGKTLLARAL 63

Query: 61  AKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE--------LAEQSIIYID 112
           A+ + +P + +  T       +               +             A + I+ +D
Sbjct: 64  ARALGLPFVRIQCTPDLLPSDL--LGTYAYAA--LLLEPGEFRFVPGPLFAAVRVILLLD 119

Query: 113 EIDKISKKT 121
           EI++   + 
Sbjct: 120 EINRAPPEV 128

Length = 329

>gnl|CDD|223540 COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 9/122 (7%)

Query: 25  YKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD 84
            KR  L +   +   K  +LL GP G GKTL+ K +A       I V  +    + +VG 
Sbjct: 262 LKRPELFRKLGLRPPKG-VLLYGPPGTGKTLLAKAVALESRSRFISVKGSELL-SKWVG- 318

Query: 85  DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG 144
           + E  I++L             SII+IDEID ++        +D SG  V   LL  ++G
Sbjct: 319 ESEKNIRELFE----KARKLAPSIIFIDEIDSLASGRG--PSEDGSGRRVVGQLLTELDG 372

Query: 145 VN 146
           + 
Sbjct: 373 IE 374

Length = 494

>gnl|CDD|130309 TIGR01242, 26Sp45, 26S proteasome subunit P45 family

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 16/104 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKTL+ K +A   N   I V  +      Y+G+       +L+ E     E
Sbjct: 159 VLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRK-YIGEGA-----RLVREI---FE 209

Query: 103 LAEQ---SIIYIDEIDKI-SKKTDVVSGKDVSGEGVQQSLLKLI 142
           LA++   SII+IDEID I +K+TD  +  D     VQ++L++L+
Sbjct: 210 LAKEKAPSIIFIDEIDAIAAKRTDSGTSGD---REVQRTLMQLL 250

Many proteins may score above the trusted cutoff because an internal. Length = 364

>gnl|CDD|224144 COG1223, COG1223, Predicted ATPase (AAA+ superfamily) [General function prediction only]

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 29/120 (24%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEK---------SNILLVGPTGCGKTLMV 57
           +IGQ E K+   +          +++    YLE           N+L  GP G GKT+M 
Sbjct: 123 VIGQEEAKRKCRL----------IME----YLENPERFGDWAPKNVLFYGPPGTGKTMMA 168

Query: 58  KTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI 117
           K LA    VP+++V AT      +VGD    I     HE       A   I++IDE+D I
Sbjct: 169 KALANEAKVPLLLVKATELI-GEHVGDGARRI-----HELYERARKAAPCIVFIDELDAI 222

Length = 368

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 8/103 (7%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKTL+ K +A       I ++      + Y G+  E      L E   + E
Sbjct: 215 VLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIM-SKYYGESEER-----LREIFKEAE 268

Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV 145
               SII+IDEID I+ K + V+G +V    V Q LL L++G+
Sbjct: 269 ENAPSIIFIDEIDAIAPKREEVTG-EVEKRVVAQ-LLTLMDGL 309

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|224143 COG1222, RPT1, ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 16/104 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKTL+ K +A   +   I V  +   +  Y+G+       +L+ E     E
Sbjct: 188 VLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQK-YIGEG-----ARLVREL---FE 238

Query: 103 LAEQ---SIIYIDEIDKI-SKKTDVVSGKDVSGEGVQQSLLKLI 142
           LA +   SII+IDEID I +K+ D  +  D     VQ+++L+L+
Sbjct: 239 LAREKAPSIIFIDEIDAIGAKRFDSGTSGDRE---VQRTMLELL 279

Length = 406

>gnl|CDD|179699 PRK03992, PRK03992, proteasome-activating nucleotidase; Provisional

 Score = 48.3 bits (116), Expect = 1e-06
 Identities = 40/106 (37%), Positives = 59/106 (55%), Gaps = 18/106 (16%)

Query: 41  SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYD 100
             +LL GP G GKTL+ K +A   N   I V  +   +  ++G+       +L+ E    
Sbjct: 166 KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQK-FIGEGA-----RLVREL--- 216

Query: 101 VELAEQ---SIIYIDEIDKI-SKKTDVVSGKDVSGEG-VQQSLLKL 141
            ELA +   SII+IDEID I +K+TD  SG   SG+  VQ++L++L
Sbjct: 217 FELAREKAPSIIFIDEIDAIAAKRTD--SG--TSGDREVQRTLMQL 258

Length = 389

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 27/121 (22%), Positives = 46/121 (38%), Gaps = 14/121 (11%)

Query: 40  KSNILLVGPTGCGKTLMVKTLAKIINVP---IIVVDATSFTEAGYVGDDVESIIQKLLHE 96
              IL+VGP G GKT + + LA+ +  P   +I +D     E       +  +  K    
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASG 61

Query: 97  CDYD-----VELAEQS---IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS 148
                    + LA +    ++ +DEI  +    D      +      + LL L    NL+
Sbjct: 62  SGELRLRLALALARKLKPDVLILDEITSL---LDAEQEALLLLLEELRLLLLLKSEKNLT 118

Query: 149 I 149
           +
Sbjct: 119 V 119

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|240423 PTZ00454, PTZ00454, 26S protease regulatory subunit 6B-like protein; Provisional

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 37/108 (34%), Positives = 52/108 (48%), Gaps = 24/108 (22%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV- 101
           +LL GP G GKT++ K +A       I V  + F             +QK L E    V 
Sbjct: 182 VLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF-------------VQKYLGEGPRMVR 228

Query: 102 ---ELAEQ---SIIYIDEIDKI-SKKTDVVSGKDVSGEGVQQSLLKLI 142
               LA +   SII+IDE+D I +K+ D  +G D     VQ+ LL+L+
Sbjct: 229 DVFRLARENAPSIIFIDEVDSIATKRFDAQTGAD---REVQRILLELL 273

Length = 398

>gnl|CDD|219538 pfam07728, AAA_5, AAA domain (dynein-related subfamily)

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 24/93 (25%)

Query: 42  NILLVGPTGCGKTLMVKTLAKII-NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYD 100
            +LLVGP G GK+ + + LA  + N P+  V  T  T      +D++          + D
Sbjct: 1   GVLLVGPPGTGKSELAERLAAALSNRPVFYVQLTRDTTE----EDLKGRR-------NID 49

Query: 101 VELAEQS------------IIYIDEIDKISKKT 121
              A               I  +DEI++ +   
Sbjct: 50  PGGASWVDGPLVRAAREGEIAVLDEINRANPDV 82

This Pfam entry includes some of the AAA proteins not detected by the pfam00004 model. Length = 135

>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 16/89 (17%)

Query: 40  KSNILLVGPTGCGKTLMVKTLA-KIIN--VPIIVVDATSFT------EAG--YVGDDVES 88
           K+N +LVG  G GKT +V+ LA +I+N  VP  + D   ++       AG  Y G + E 
Sbjct: 191 KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRG-EFEE 249

Query: 89  IIQKLLHECDYDVELAEQSIIYIDEIDKI 117
            ++ +L E    VE ++  I++IDEI  I
Sbjct: 250 RLKAVLKE----VEKSKNVILFIDEIHTI 274

Length = 786

>gnl|CDD|182683 PRK10733, hflB, ATP-dependent metalloprotease; Reviewed

 Score = 46.2 bits (109), Expect = 7e-06
 Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 11/120 (9%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +L+VGP G GKTL+ K +A    VP   +  + F E  +VG    S ++ +  +     +
Sbjct: 188 VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGA-SRVRDMFEQ----AK 241

Query: 103 LAEQSIIYIDEIDKISKK--TDVVSGKDVSGEGVQQSLLKL--IEGVNLSITSLAEKKNP 158
            A   II+IDEID + ++    +  G D   + + Q L+++   EG N  I  +A    P
Sbjct: 242 KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-NEGIIVIAATNRP 300

Length = 644

>gnl|CDD|214386 CHL00176, ftsH, cell division protein; Validated

 Score = 45.8 bits (109), Expect = 9e-06
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 23/103 (22%)

Query: 29  FLLKSKNIYLEKSN-----ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE----- 78
             LK    +          +LLVGP G GKTL+ K +A    VP   +  + F E     
Sbjct: 200 SFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGV 259

Query: 79  -AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
            A  V D  +   +     C          I++IDEID + ++
Sbjct: 260 GAARVRDLFKKAKEN--SPC----------IVFIDEIDAVGRQ 290

Length = 638

>gnl|CDD|233327 TIGR01241, FtsH_fam, ATP-dependent metalloprotease FtsH

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 30/90 (33%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE------AGYVGDDVESIIQKLLHE 96
           +LLVGP G GKTL+ K +A    VP   +  + F E      A  V D            
Sbjct: 91  VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRD------------ 138

Query: 97  CDYDVELAEQ------SIIYIDEIDKISKK 120
                 L EQ       II+IDEID + ++
Sbjct: 139 ------LFEQAKKNAPCIIFIDEIDAVGRQ 162

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH [Cellular processes, Cell division, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 495

>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 38/135 (28%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL 60
            L + +IGQ E  + VS    +  +R    L   N  +   + L +GPTG GKT + K L
Sbjct: 488 RLKKRVIGQDEAVEAVS----DAIRRARAGLGDPNRPI--GSFLFLGPTGVGKTELAKAL 541

Query: 61  AKIIN---VPIIVVDATSFTEA-----------GYVGDD-----VESIIQKLLHECDYDV 101
           A+ +      +I +D + + E            GYVG +      E++ +K         
Sbjct: 542 AEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRK--------- 592

Query: 102 ELAEQSIIYIDEIDK 116
                S+I +DEI+K
Sbjct: 593 ---PYSVILLDEIEK 604

Length = 786

>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like protein; Provisional

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 39/109 (35%), Positives = 59/109 (54%), Gaps = 26/109 (23%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV- 101
           ++L GP G GKTL+ K +A          + TS T    VG +   +IQK L +    V 
Sbjct: 220 VILYGPPGTGKTLLAKAVA----------NETSATFLRVVGSE---LIQKYLGDGPKLVR 266

Query: 102 ---ELAEQ---SIIYIDEIDKI-SKKTDVVSGKDVSGEG-VQQSLLKLI 142
               +AE+   SI++IDEID I +K+ D  SG    GE  +Q+++L+L+
Sbjct: 267 ELFRVAEENAPSIVFIDEIDAIGTKRYDATSG----GEKEIQRTMLELL 311

Length = 438

>gnl|CDD|223401 COG0324, MiaA, tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72
          I++ GPT  GKT +   LAK +   II +D
Sbjct: 6  IVIAGPTASGKTALAIALAKRLGGEIISLD 35

Length = 308

>gnl|CDD|233959 TIGR02639, ClpA, ATP-dependent Clp protease ATP-binding subunit clpA

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 11/53 (20%)

Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-----------AGYVG 83
           + L VGPTG GKT + K LA+ + V ++  D + + E            GYVG
Sbjct: 485 SFLFVGPTGVGKTELAKQLAEELGVHLLRFDMSEYMEKHTVSRLIGSPPGYVG 537

[Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 730

>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain

 Score = 38.7 bits (90), Expect = 5e-04
 Identities = 14/58 (24%), Positives = 27/58 (46%)

Query: 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHE 96
             ++LL GP+G GKT +++ L + + V     D             +  ++++LL E
Sbjct: 23 GPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLRE 80

This family of domains contain a P-loop motif that is characteristic of the AAA superfamily. Length = 154

>gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

 Score = 39.1 bits (92), Expect = 0.001
 Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 29/131 (22%)

Query: 30  LLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESI 89
            +++ ++     +++L GP G GKT + + +A   N     + A +      V D     
Sbjct: 42  AVEAGHL----HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG----VKD----- 88

Query: 90  IQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI 149
           +++++ E   +  L  ++I+++DEI + +K               Q +LL  +E  N +I
Sbjct: 89  LREIIEEARKNRLLGRRTILFLDEIHRFNKAQ-------------QDALLPHVE--NGTI 133

Query: 150 TSL-AEKKNPS 159
             + A  +NPS
Sbjct: 134 ILIGATTENPS 144

Length = 436

>gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed

 Score = 38.9 bits (92), Expect = 0.001
 Identities = 33/148 (22%), Positives = 62/148 (41%), Gaps = 55/148 (37%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLF-LLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN 65
           ++GQ   + ++  G     K L  ++++  +    S+++L GP G GKT    TLA+II 
Sbjct: 14  VVGQ---EHLLGPG-----KPLRRMIEAGRL----SSMILWGPPGTGKT----TLARII- 56

Query: 66  VPIIVVDATSFTEAGYVGDDVESI---------IQKLLHECDYDVELAEQSIIYIDEIDK 116
                        AG      E++         +++++ E         ++I++IDEI +
Sbjct: 57  -------------AGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHR 103

Query: 117 ISKKTDVVSGKDVSGEGVQQ-SLLKLIE 143
            +K               QQ +LL  +E
Sbjct: 104 FNKA--------------QQDALLPHVE 117

Length = 413

>gnl|CDD|234626 PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

 Score = 38.6 bits (91), Expect = 0.001
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)

Query: 43 ILLVGPTGCGKT-LMVKTLAKIINVPIIVVDA 73
          I++VGPT  GKT L ++ LAK +N  II  D+
Sbjct: 7  IVIVGPTASGKTALAIE-LAKRLNGEIISADS 37

Length = 307

>gnl|CDD|233328 TIGR01243, CDC48, AAA family ATPase, CDC48 subfamily

 Score = 38.7 bits (90), Expect = 0.002
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 6/99 (6%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKTL+ K +A       I V       + +VG+  E  I+++  +      
Sbjct: 490 VLLFGPPGTGKTLLAKAVATESGANFIAVRGPEIL-SKWVGES-EKAIREIFRK----AR 543

Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL 141
            A  +II+ DEID I+          V+   V Q L ++
Sbjct: 544 QAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEM 582

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. Length = 733

>gnl|CDD|222104 pfam13401, AAA_22, AAA domain

 Score = 36.9 bits (86), Expect = 0.002
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 24/99 (24%)

Query: 39  EKSNILLVGPTGCGKTLMVKTLAK-IINVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
                +L G +G GKT +++ LA+ + N  ++ V+A S           + +++K+L   
Sbjct: 3   GAGIGVLTGESGSGKTTLLRRLARQLPNRRVVYVEAPSLG-------TPKDLLRKILRAL 55

Query: 98  DYDV------ELAEQ----------SIIYIDEIDKISKK 120
              +      EL E            ++ IDE   +S +
Sbjct: 56  GLPLSGGTTAELLEAILDALKRRGRPLLIIDEAQHLSLE 94

Length = 124

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 2/82 (2%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           IL+ GP G GK+ + K LA+ + +P+I +D     E     DD    +  +  + +   E
Sbjct: 2   ILITGPPGSGKSTLAKKLAEKLGIPVISLDDLLREEGLAELDD--GELDDIDIDLELLEE 59

Query: 103 LAEQSIIYIDEIDKISKKTDVV 124
           + ++       ID + + T  +
Sbjct: 60  ILDELAKQEWVIDGVRESTLEL 81

Length = 114

>gnl|CDD|223541 COG0465, HflB, ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 18/90 (20%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LLVGP G GKTL+ K +A    VP   +  + F E  +VG     +            +
Sbjct: 186 VLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM-FVGVGASRV-----------RD 233

Query: 103 LAEQ------SIIYIDEIDKISKKTDVVSG 126
           L EQ       II+IDEID + ++     G
Sbjct: 234 LFEQAKKNAPCIIFIDEIDAVGRQRGAGLG 263

Length = 596

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	225
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	100.0
KOG0745|consensus	564		100.0
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	100.0
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	100.0
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	100.0
KOG0738|consensus	491		100.0
KOG0730|consensus	693		99.97
KOG0733|consensus	802		99.97
KOG0739|consensus	439		99.97
KOG0736|consensus	953		99.97
KOG0733|consensus	802		99.97
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	99.96
KOG0727|consensus	408		99.96
KOG0734|consensus	752		99.96
KOG0728|consensus	404		99.95
KOG0652|consensus	424		99.95
KOG0737|consensus	386		99.94
KOG0726|consensus	440		99.94
KOG0735|consensus	952		99.94
KOG0731|consensus	774		99.93
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	99.93
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	99.93
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	99.93
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	99.93
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	99.92
KOG0729|consensus	435		99.92
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.92
CHL00195	489	ycf46 Ycf46; Provisional	99.92
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	99.92
KOG0651|consensus	388		99.91
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	99.91
PRK03992	389	proteasome-activating nucleotidase; Provisional	99.91
KOG0740|consensus	428		99.91
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	99.91
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	99.9
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	99.9
CHL00176	638	ftsH cell division protein; Validated	99.88
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	99.87
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	99.86
KOG0730|consensus	693		99.85
PF00004	132	AAA: ATPase family associated with various cellula	99.85
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	99.85
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	99.85
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	99.85
KOG0732|consensus	1080		99.84
KOG0744|consensus	423		99.84
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.84
KOG2004|consensus	906		99.84
CHL00206	2281	ycf2 Ycf2; Provisional	99.83
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	99.83
CHL00181	287	cbbX CbbX; Provisional	99.83
KOG0741|consensus	744		99.82
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.82
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	99.82
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	99.82
KOG0742|consensus	630		99.82
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	99.81
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	99.8
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.8
COG0714	329	MoxR-like ATPases [General function prediction onl	99.79
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	99.78
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	99.76
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.76
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	99.74
KOG0743|consensus	457		99.74
CHL00095	821	clpC Clp protease ATP binding subunit	99.72
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.72
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	99.71
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	99.71
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.71
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.71
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	99.69
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	99.69
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.69
CHL00081	350	chlI Mg-protoporyphyrin IX chelatase	99.68
PF07726	131	AAA_3: ATPase family associated with various cellu	99.68
PRK13407	334	bchI magnesium chelatase subunit I; Provisional	99.68
COG3604	550	FhlA Transcriptional regulator containing GAF, AAA	99.68
COG2204	464	AtoC Response regulator containing CheY-like recei	99.67
PRK10865	857	protein disaggregation chaperone; Provisional	99.66
PRK07940	394	DNA polymerase III subunit delta'; Validated	99.66
COG3829	560	RocR Transcriptional regulator containing PAS, AAA	99.65
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	99.64
PRK13531	498	regulatory ATPase RavA; Provisional	99.64
PRK13342	413	recombination factor protein RarA; Reviewed	99.64
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	99.64
TIGR02030	337	BchI-ChlI magnesium chelatase ATPase subunit I. Th	99.63
PHA02244	383	ATPase-like protein	99.63
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	99.63
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	99.62
KOG0989|consensus	346		99.62
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	99.62
PLN03025	319	replication factor C subunit; Provisional	99.62
PRK10865	857	protein disaggregation chaperone; Provisional	99.62
TIGR02442	633	Cob-chelat-sub cobaltochelatase subunit. A number	99.61
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	99.61
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	99.61
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.6
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	99.59
KOG1051|consensus	898		99.59
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	99.58
CHL00095	821	clpC Clp protease ATP binding subunit	99.58
COG1221	403	PspF Transcriptional regulators containing an AAA-	99.58
smart00350	509	MCM minichromosome maintenance proteins.	99.58
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	99.57
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	99.57
KOG2028|consensus	554		99.56
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	99.54
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	99.54
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	99.54
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	99.53
PRK04195	482	replication factor C large subunit; Provisional	99.53
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	99.52
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	99.52
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	99.52
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	99.52
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	99.52
PHA02544	316	44 clamp loader, small subunit; Provisional	99.52
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	99.51
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	99.51
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	99.51
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	99.5
PRK15424	538	propionate catabolism operon regulatory protein Pr	99.5
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	99.5
PRK11608	326	pspF phage shock protein operon transcriptional ac	99.5
PRK09862	506	putative ATP-dependent protease; Provisional	99.49
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	99.49
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	99.49
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	99.49
COG1239	423	ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis	99.49
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	99.49
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	99.48
PRK13341	725	recombination factor protein RarA/unknown domain f	99.48
PTZ00111	915	DNA replication licensing factor MCM4; Provisional	99.46
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	99.46
TIGR02329	526	propionate_PrpR propionate catabolism operon regul	99.46
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	99.46
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	99.46
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	99.45
TIGR02031	589	BchD-ChlD magnesium chelatase ATPase subunit D. Th	99.45
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	99.44
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	99.44
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	99.44
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	99.44
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	99.43
COG0606	490	Predicted ATPase with chaperone activity [Posttran	99.43
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	99.43
PRK05022	509	anaerobic nitric oxide reductase transcription reg	99.43
PRK12402	337	replication factor C small subunit 2; Reviewed	99.43
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	99.41
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	99.41
TIGR00764	608	lon_rel lon-related putative ATP-dependent proteas	99.41
KOG0991|consensus	333		99.41
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	99.4
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	99.4
PRK10820	520	DNA-binding transcriptional regulator TyrR; Provis	99.4
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	99.4
PRK11388	638	DNA-binding transcriptional regulator DhaR; Provis	99.38
PRK13406	584	bchD magnesium chelatase subunit D; Provisional	99.38
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	99.36
PRK09112	351	DNA polymerase III subunit delta'; Validated	99.34
PRK05564	313	DNA polymerase III subunit delta'; Validated	99.34
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	99.34
KOG0736|consensus	953		99.33
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	99.33
PRK08058	329	DNA polymerase III subunit delta'; Validated	99.32
PTZ00112	1164	origin recognition complex 1 protein; Provisional	99.32
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.32
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.31
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.31
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	99.31
PRK05707	328	DNA polymerase III subunit delta'; Validated	99.3
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.3
smart00382	148	AAA ATPases associated with a variety of cellular	99.3
PRK00440	319	rfc replication factor C small subunit; Reviewed	99.3
PRK07471	365	DNA polymerase III subunit delta'; Validated	99.29
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	99.29
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	99.27
PRK07399	314	DNA polymerase III subunit delta'; Validated	99.26
KOG0735|consensus	952		99.26
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	99.23
PRK08084	235	DNA replication initiation factor; Provisional	99.22
PRK00149	450	dnaA chromosomal replication initiation protein; R	99.22
PRK06893	229	DNA replication initiation factor; Validated	99.21
PRK13765	637	ATP-dependent protease Lon; Provisional	99.2
PRK08727	233	hypothetical protein; Validated	99.18
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	99.18
COG3283	511	TyrR Transcriptional regulator of aromatic amino a	99.17
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	99.17
PRK10923	469	glnG nitrogen regulation protein NR(I); Provisiona	99.15
KOG1969|consensus	877		99.14
KOG2170|consensus	344		99.14
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	99.14
PRK08903	227	DnaA regulatory inactivator Hda; Validated	99.14
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	99.13
PRK06526	254	transposase; Provisional	99.13
COG1241	682	MCM2 Predicted ATPase involved in replication cont	99.12
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	99.11
PRK08181	269	transposase; Validated	99.11
TIGR02915	445	PEP_resp_reg putative PEP-CTERM system response re	99.11
PF00493	331	MCM: MCM2/3/5 family This family extends the MCM d	99.11
PRK06964	342	DNA polymerase III subunit delta'; Validated	99.1
PRK15115	444	response regulator GlrR; Provisional	99.1
PRK11361	457	acetoacetate metabolism regulatory protein AtoC; P	99.09
PRK06871	325	DNA polymerase III subunit delta'; Validated	99.08
PRK12377	248	putative replication protein; Provisional	99.07
PRK12422	445	chromosomal replication initiation protein; Provis	99.07
PRK04132	846	replication factor C small subunit; Provisional	99.07
PRK08769	319	DNA polymerase III subunit delta'; Validated	99.06
PRK14086	617	dnaA chromosomal replication initiation protein; P	99.05
KOG0480|consensus	764		99.04
PRK07993	334	DNA polymerase III subunit delta'; Validated	99.03
COG3284	606	AcoR Transcriptional activator of acetoin/glycerol	99.02
KOG0478|consensus	804		99.01
PRK14088	440	dnaA chromosomal replication initiation protein; P	99.01
PRK08699	325	DNA polymerase III subunit delta'; Validated	99.0
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	99.0
PRK09183	259	transposase/IS protein; Provisional	98.99
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.97
TIGR01818	463	ntrC nitrogen regulation protein NR(I). This model	98.95
PRK05642	234	DNA replication initiation factor; Validated	98.95
KOG0482|consensus	721		98.95
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.94
PRK08116	268	hypothetical protein; Validated	98.93
KOG2035|consensus	351		98.91
PRK10365	441	transcriptional regulatory protein ZraR; Provision	98.9
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.89
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.88
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.87
PRK06620	214	hypothetical protein; Validated	98.86
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.86
KOG0477|consensus	854		98.85
PRK07952	244	DNA replication protein DnaC; Validated	98.84
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	98.84
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.83
KOG0990|consensus	360		98.82
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	98.81
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.8
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.8
KOG0741|consensus	744		98.79
KOG1942|consensus	456		98.79
PRK06835	329	DNA replication protein DnaC; Validated	98.77
KOG0481|consensus	729		98.74
COG4650	531	RtcR Sigma54-dependent transcription regulator con	98.74
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	98.73
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.72
PRK05917	290	DNA polymerase III subunit delta'; Validated	98.72
PF13173	128	AAA_14: AAA domain	98.71
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.7
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.66
PRK06921	266	hypothetical protein; Provisional	98.66
PRK09087	226	hypothetical protein; Validated	98.64
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.63
PRK08939	306	primosomal protein DnaI; Reviewed	98.6
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.58
PF12774	231	AAA_6: Hydrolytic ATP binding site of dynein motor	98.58
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.57
KOG0479|consensus	818		98.56
PRK05818	261	DNA polymerase III subunit delta'; Validated	98.52
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	98.51
KOG3347|consensus	176		98.5
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.5
PRK15455	644	PrkA family serine protein kinase; Provisional	98.5
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.48
PRK07276	290	DNA polymerase III subunit delta'; Validated	98.48
PHA02624	647	large T antigen; Provisional	98.47
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	98.46
COG1123	539	ATPase components of various ABC-type transport sy	98.46
COG5271	4600	MDN1 AAA ATPase containing von Willebrand factor t	98.45
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.45
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.44
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.4
PRK07132	299	DNA polymerase III subunit delta'; Validated	98.39
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.39
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.38
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.38
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	98.37
KOG0058|consensus	716		98.37
PRK07261	171	topology modulation protein; Provisional	98.35
PHA00729	226	NTP-binding motif containing protein	98.35
PRK08118	167	topology modulation protein; Reviewed	98.35
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.33
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.29
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.29
COG1123	539	ATPase components of various ABC-type transport sy	98.28
KOG2680|consensus	454		98.27
TIGR02688	449	conserved hypothetical protein TIGR02688. Members	98.26
PRK00131	175	aroK shikimate kinase; Reviewed	98.23
PF05729	166	NACHT: NACHT domain	98.23
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.22
KOG1514|consensus	767		98.19
KOG0056|consensus	790		98.19
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	98.17
PRK13947	171	shikimate kinase; Provisional	98.17
PRK03839	180	putative kinase; Provisional	98.17
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.17
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.17
PRK00625	173	shikimate kinase; Provisional	98.16
PHA02774	613	E1; Provisional	98.15
COG4172	534	ABC-type uncharacterized transport system, duplica	98.15
PRK10536	262	hypothetical protein; Provisional	98.14
KOG1970|consensus	634		98.13
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.13
KOG0055|consensus	1228		98.13
cd01128	249	rho_factor Transcription termination factor rho is	98.12
PRK06217	183	hypothetical protein; Validated	98.12
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.11
PRK13949	169	shikimate kinase; Provisional	98.11
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.1
COG4172	534	ABC-type uncharacterized transport system, duplica	98.1
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.09
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.09
PRK14532	188	adenylate kinase; Provisional	98.08
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	98.08
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.06
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.06
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	98.06
PRK14531	183	adenylate kinase; Provisional	98.05
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.05
PRK13948	182	shikimate kinase; Provisional	98.04
PRK14974	336	cell division protein FtsY; Provisional	98.04
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	98.04
PRK14530	215	adenylate kinase; Provisional	98.04
KOG2227|consensus	529		98.02
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	98.02
PRK09376	416	rho transcription termination factor Rho; Provisio	98.02
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.01
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.0
PRK05057	172	aroK shikimate kinase I; Reviewed	98.0
PRK04296	190	thymidine kinase; Provisional	98.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.99
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.98
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	97.98
PRK06762	166	hypothetical protein; Provisional	97.98
KOG1808|consensus	1856		97.97
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.97
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.96
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	97.95
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.95
PRK08533	230	flagellar accessory protein FlaH; Reviewed	97.95
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	97.94
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	97.94
PRK03731	171	aroL shikimate kinase II; Reviewed	97.93
PRK13946	184	shikimate kinase; Provisional	97.92
PRK06547	172	hypothetical protein; Provisional	97.91
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	97.91
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	97.91
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	97.91
PF13245	76	AAA_19: Part of AAA domain	97.9
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.9
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.9
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.9
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.9
PTZ00088	229	adenylate kinase 1; Provisional	97.89
COG3638	258	ABC-type phosphate/phosphonate transport system, A	97.89
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	97.89
KOG0055|consensus	1228		97.89
PRK02496	184	adk adenylate kinase; Provisional	97.89
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.89
PRK14528	186	adenylate kinase; Provisional	97.89
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	97.88
cd03269	210	ABC_putative_ATPase This subfamily is involved in	97.88
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	97.87
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	97.86
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	97.86
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	97.86
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	97.86
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	97.85
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.85
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	97.85
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	97.85
TIGR00767	415	rho transcription termination factor Rho. Members	97.85
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	97.85
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.84
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	97.84
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	97.84
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	97.84
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	97.84
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	97.83
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	97.83
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.83
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	97.83
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.83
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.83
KOG1051|consensus	898		97.83
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	97.83
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.83
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.83
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.82
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	97.82
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.82
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	97.82
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	97.82
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	97.82
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	97.82
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.82
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	97.82
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	97.81
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.81
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	97.81
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	97.81
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	97.81
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	97.81
PF05272	198	VirE: Virulence-associated protein E; InterPro: IP	97.81
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	97.81
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	97.81
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.81
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.8
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	97.8
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	97.8
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	97.8
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	97.8
PRK00279	215	adk adenylate kinase; Reviewed	97.8
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	97.8
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	97.8
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.8
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	97.8
PRK06696	223	uridine kinase; Validated	97.79
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	97.79
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	97.79
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	97.79
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	97.78
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	97.78
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	97.78
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.78
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	97.77
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	97.77
COG4178	604	ABC-type uncharacterized transport system, permeas	97.77
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	97.77
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	97.77
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.77
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	97.77
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	97.77
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	97.77
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	97.77
PTZ00301	210	uridine kinase; Provisional	97.76
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.76
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	97.76
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	97.76
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.76
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	97.76
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	97.75
PLN02200	234	adenylate kinase family protein	97.75
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	97.75
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	97.75
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	97.75
PF05707	193	Zot: Zonular occludens toxin (Zot); InterPro: IPR0	97.75
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.74
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.74
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.74
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.74
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	97.74
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.74
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	97.74
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	97.74
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	97.74
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	97.74
COG4525	259	TauB ABC-type taurine transport system, ATPase com	97.74
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.74
PRK04040	188	adenylate kinase; Provisional	97.74
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	97.73
PRK04182	180	cytidylate kinase; Provisional	97.73
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	97.73
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	97.73
PRK09984	262	phosphonate/organophosphate ester transporter subu	97.73
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	97.73
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	97.73
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	97.73
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	97.72
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	97.72
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	97.72
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	97.72
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	97.72
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	97.72
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	97.72
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	97.72
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.72
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.72
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	97.72
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	97.72
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	97.71
PRK14527	191	adenylate kinase; Provisional	97.71
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.71
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	97.71
PRK11823	446	DNA repair protein RadA; Provisional	97.71
PRK10908	222	cell division protein FtsE; Provisional	97.71
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	97.71
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	97.71
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	97.71
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.71
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	97.7
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	97.7
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	97.7
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	97.7
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.7
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.7
PRK14526	211	adenylate kinase; Provisional	97.69
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	97.69
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	97.69
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	97.69

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-45  Score=288.66  Aligned_cols=222  Identities=54%  Similarity=0.876  Sum_probs=208.1

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEee-cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccC
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLL-KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAG   80 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~   80 (225)
                      .||++++||+.+|+.|.-+++++|++.... +..++...+.++||+||+|||||.||+.+|+.++.||..-++..+.++|
T Consensus        58 ~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAG  137 (408)
T COG1219          58 HLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAG  137 (408)
T ss_pred             HhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhcc
Confidence            589999999999999999999999997654 4455888889999999999999999999999999999999999999999


Q ss_pred             ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          81 YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                      |+|++++..+..+++.+.+.+++++.+|+||||||++.++..+.+ .++.+++.+|++||+++++...++|..+++.+|.
T Consensus       138 YVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~  217 (408)
T COG1219         138 YVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQ  217 (408)
T ss_pred             ccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCc
Confidence            999999999999999999999999999999999999999987777 8899999999999999999999999999999999


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc------chhcccCChhHHHHccCCCCC
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN------YNLICETNTEDLINFGIIPVL  225 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~------~~l~~~~~~~~l~~~~~~~~~  225 (225)
                      +.  ++-|.|+|++|||.++|.+|+.-+.+|.... |+|.......      ..+++.+.|+||.+||+||||
T Consensus       218 Qe--~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEf  288 (408)
T COG1219         218 QE--FIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEF  288 (408)
T ss_pred             cc--eEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHH
Confidence            99  9999999999999999999999999999887 9999876532      678899999999999999997

>KOG0745|consensus

Probab=100.00  E-value=2.8e-37  Score=252.57  Aligned_cols=222  Identities=49%  Similarity=0.871  Sum_probs=196.4

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEe--------------------------------------------e--cccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFL--------------------------------------------L--KSKN   35 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~--------------------------------------------~--~~~~   35 (225)
                      .||+.|+||+.+|+.|.-+++++|+++..                                            .  .+.+
T Consensus       142 ~Ldk~VVGQe~AKKvLsVAVYnHYkRI~hn~~s~~~~~a~~s~~~~~~~~P~~~~~~~~~a~~~~~~r~~~~~ld~~~~d  221 (564)
T KOG0745|consen  142 YLDKFVVGQEKAKKVLSVAVYNHYKRIYHNEPSRQKELAEASKSAKDRDNPIELEISESNAQWPNNQRQIAKALDEDDED  221 (564)
T ss_pred             HhhhheechhhhhheeeehhhHHHHHHhcchHHHHHHHhhhhhcccCCCCcccccccccccccccccchhcccccccccc
Confidence            58999999999999999999998876533                                            0  0114


Q ss_pred             eeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910          36 IYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID  115 (225)
Q Consensus        36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid  115 (225)
                      +.+.+.+|||.||+|+|||.||+.+|+.++.||...+|..+..+||+|++++..+..++..+.+.+++++.+|+||||+|
T Consensus       222 v~LeKSNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvD  301 (564)
T KOG0745|consen  222 VELEKSNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVD  301 (564)
T ss_pred             eeeecccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhh
Confidence            55567799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910         116 KISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE  194 (225)
Q Consensus       116 ~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~  194 (225)
                      ++........ .++.+++.+|++||+++|+.-..+|..+.++.+...  .+.|+|+|++|||++++.+||..+-||.+.+
T Consensus       302 Ki~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd--~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~  379 (564)
T KOG0745|consen  302 KITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGD--TVQIDTTNILFIASGAFVGLDKIISRRLDDK  379 (564)
T ss_pred             hhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCC--eEEEeccceEEEecccccchHHHHHHhhcch
Confidence            9996554433 579999999999999999988888888877777777  9999999999999999999999999998887


Q ss_pred             -cccccccccc------------------chhcccCChhHHHHccCCCCC
Q psy5910         195 -TNFLEKLNNN------------------YNLICETNTEDLINFGIIPVL  225 (225)
Q Consensus       195 -i~~~~~~~~~------------------~~l~~~~~~~~l~~~~~~~~~  225 (225)
                       ++|..|+...                  ..++..+.+.||..||+||||
T Consensus       380 slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEf  429 (564)
T KOG0745|consen  380 SLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEF  429 (564)
T ss_pred             hcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHH
Confidence             9999994311                  448889999999999999997

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=100.00  E-value=1.1e-35  Score=250.90  Aligned_cols=222  Identities=52%  Similarity=0.867  Sum_probs=185.7

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecc--cceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKS--KNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA   79 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~   79 (225)
                      +|+++|+||+++++.|..++++++++......  .+...+.+++||+||||||||++|+++|+.++.+|+.+++..+...
T Consensus        68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~  147 (412)
T PRK05342         68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEA  147 (412)
T ss_pred             HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccC
Confidence            58899999999999999888777776533211  1344566899999999999999999999999999999999998878


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP  158 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~  158 (225)
                      +|.|.+....+..++..+.+.+....++||||||+|++.+.+.+.+ .++.+++.+|++|+++||+....++..+++..+
T Consensus       148 gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~  227 (412)
T PRK05342        148 GYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHP  227 (412)
T ss_pred             CcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcC
Confidence            8999988887777777666666777899999999999998754443 567788899999999999877777888888888


Q ss_pred             CCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc------chhcccCChhHHHHccCCCCC
Q psy5910         159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN------YNLICETNTEDLINFGIIPVL  225 (225)
Q Consensus       159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~------~~l~~~~~~~~l~~~~~~~~~  225 (225)
                      +.+  +++|+|+|++|||++++.+++..+.+|.... ++|.......      ..+++++.+++|.++|++|||
T Consensus       228 ~~~--~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEf  299 (412)
T PRK05342        228 QQE--FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEF  299 (412)
T ss_pred             CCC--eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHH
Confidence            877  9999999999999999999988888887655 8887543221      467788999999999999997

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-36  Score=239.73  Aligned_cols=171  Identities=27%  Similarity=0.371  Sum_probs=147.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|.|++++++.|++.+..++.++..+...++.+|+ +||||||||||||.|||++|+..++.|+.+.++.+.. +|.|+
T Consensus       151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK-GVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq-KYiGE  228 (406)
T COG1222         151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK-GVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ-KYIGE  228 (406)
T ss_pred             hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC-ceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH-HHhcc
Confidence            468999999999999999999999999999997655 9999999999999999999999999999999999987 79999


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHH---HHHHhcCCcCccccccccCCCCC
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSL---LKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~L---l~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                      . ...++.+|..+    +...|+||||||||++..+|....  ...++++|-.+   +..||++.           +..+
T Consensus       229 G-aRlVRelF~lA----rekaPsIIFiDEIDAIg~kR~d~~--t~gDrEVQRTmleLL~qlDGFD-----------~~~n  290 (406)
T COG1222         229 G-ARLVRELFELA----REKAPSIIFIDEIDAIGAKRFDSG--TSGDREVQRTMLELLNQLDGFD-----------PRGN  290 (406)
T ss_pred             c-hHHHHHHHHHH----hhcCCeEEEEechhhhhcccccCC--CCchHHHHHHHHHHHHhccCCC-----------CCCC
Confidence            8 78899999887    677999999999999998886543  12334455554   45556543           2334


Q ss_pred             CceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                        +-+|++||+       ++-||||++|  |||++|+||.|+.+.
T Consensus       291 --vKVI~ATNR-------~D~LDPALLRPGR~DRkIEfplPd~~g  326 (406)
T COG1222         291 --VKVIMATNR-------PDILDPALLRPGRFDRKIEFPLPDEEG  326 (406)
T ss_pred             --eEEEEecCC-------ccccChhhcCCCcccceeecCCCCHHH
Confidence              999999999       8899999999  999999999999977

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=100.00  E-value=1.1e-34  Score=243.60  Aligned_cols=222  Identities=54%  Similarity=0.873  Sum_probs=183.7

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEee--c--ccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLL--K--SKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT   77 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~--~--~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~   77 (225)
                      .|+++|+||+++++.+..++++++++....  .  +.+......++||+||||||||++|+++|+.++.+|..+++..+.
T Consensus        74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~  153 (413)
T TIGR00382        74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLT  153 (413)
T ss_pred             HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhcc
Confidence            589999999999999999998888776431  1  112334457899999999999999999999999999999999888


Q ss_pred             ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          78 EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                      ..+|.|.+....+...+....+.+...+++||||||+|++.+++.+.+ +++.+++++|+.|+++|++....++..+++.
T Consensus       154 ~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~  233 (413)
T TIGR00382       154 EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRK  233 (413)
T ss_pred             ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCcc
Confidence            778999987777777777666667778899999999999998765554 6688888999999999997666667778888


Q ss_pred             CCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc----chhcccCChhHHHHccCCCCC
Q psy5910         157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN----YNLICETNTEDLINFGIIPVL  225 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~----~~l~~~~~~~~l~~~~~~~~~  225 (225)
                      .++++  +++|+|+|++|||++++++++..+.+|.... ++|.......    ..+++++.++++.++|++|||
T Consensus       234 ~~~~~--~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEf  305 (413)
T TIGR00382       234 HPYQE--FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEF  305 (413)
T ss_pred             ccCCC--eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHH
Confidence            88888  9999999999999999999998888887655 8887543211    255667778999999999987

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>KOG0738|consensus

Probab=100.00  E-value=3.3e-33  Score=226.11  Aligned_cols=174  Identities=24%  Similarity=0.370  Sum_probs=149.5

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .|.|++++|+.|.+++..+..-+.-.+  ++..|.++||++||||||||+||+++|.+++..|+.++.+++.+ +|.|+.
T Consensus       213 DIagl~~AK~lL~EAVvlPi~mPe~F~--GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS-KwRGeS  289 (491)
T KOG0738|consen  213 DIAGLHEAKKLLKEAVVLPIWMPEFFK--GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS-KWRGES  289 (491)
T ss_pred             hhcchHHHHHHHHHHHhhhhhhHHHHh--hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh-hhccch
Confidence            469999999999999977665544444  33467789999999999999999999999999999999999985 899998


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF  165 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  165 (225)
                       +++++-+|..+    +...|++|||||||+++.+|+.. +...+++++.+.||..||+...+...         .+.|+
T Consensus       290 -EKlvRlLFemA----RfyAPStIFiDEIDslcs~RG~s-~EHEaSRRvKsELLvQmDG~~~t~e~---------~k~Vm  354 (491)
T KOG0738|consen  290 -EKLVRLLFEMA----RFYAPSTIFIDEIDSLCSQRGGS-SEHEASRRVKSELLVQMDGVQGTLEN---------SKVVM  354 (491)
T ss_pred             -HHHHHHHHHHH----HHhCCceeehhhHHHHHhcCCCc-cchhHHHHHHHHHHHHhhcccccccc---------ceeEE
Confidence             89999999887    66799999999999999988765 44567788999999999987655322         12289


Q ss_pred             EEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         166 NIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       166 ~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++++||.+|       +||+|++|||.++|.+|.|+.+.
T Consensus       355 VLAATN~PW-------diDEAlrRRlEKRIyIPLP~~~~  386 (491)
T KOG0738|consen  355 VLAATNFPW-------DIDEALRRRLEKRIYIPLPDAEA  386 (491)
T ss_pred             EEeccCCCc-------chHHHHHHHHhhheeeeCCCHHH
Confidence            999999999       99999999999999999999877

>KOG0730|consensus

Probab=99.97  E-value=5.1e-33  Score=237.88  Aligned_cols=171  Identities=26%  Similarity=0.340  Sum_probs=153.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|.|++++|+.|.+++.++.+++..+..+++.++ ++||||||||||||++||++|++.+++|+.+.+.++.+ +|+|+
T Consensus       434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~pp-kGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s-k~vGe  511 (693)
T KOG0730|consen  434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPP-KGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS-KYVGE  511 (693)
T ss_pred             hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCC-ceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH-HhcCc
Confidence            46799999999999999999999999998888544 59999999999999999999999999999999999986 79999


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . +..++.+|+++    +...|+|+||||+|++..+|++..+  ...+++.+.||+.||+....           ++  +
T Consensus       512 S-Er~ir~iF~kA----R~~aP~IiFfDEiDsi~~~R~g~~~--~v~~RVlsqLLtEmDG~e~~-----------k~--V  571 (693)
T KOG0730|consen  512 S-ERAIREVFRKA----RQVAPCIIFFDEIDALAGSRGGSSS--GVTDRVLSQLLTEMDGLEAL-----------KN--V  571 (693)
T ss_pred             h-HHHHHHHHHHH----hhcCCeEEehhhHHhHhhccCCCcc--chHHHHHHHHHHHccccccc-----------Cc--E
Confidence            8 88999999998    6778999999999999999974333  56788999999999986422           23  9


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||+       ++.||+|++|  |||+.|++|.|+.+.
T Consensus       572 ~ViAATNR-------pd~ID~ALlRPGRlD~iiyVplPD~~a  606 (693)
T KOG0730|consen  572 LVIAATNR-------PDMIDPALLRPGRLDRIIYVPLPDLEA  606 (693)
T ss_pred             EEEeccCC-------hhhcCHHHcCCcccceeEeecCccHHH
Confidence            99999999       8899999999  999999999999876

>KOG0733|consensus

Probab=99.97  E-value=3.1e-32  Score=230.93  Aligned_cols=171  Identities=25%  Similarity=0.382  Sum_probs=151.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|.|+++++.+|..++.++.+++..++..++..| .+|||+||||||||.||+++|++.+.+|+.+.+.++.+ +|+|+
T Consensus       511 ~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~P-sGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN-kYVGE  588 (802)
T KOG0733|consen  511 DDIGALEEVRLELNMAILAPIKRPDLFKALGIDAP-SGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN-KYVGE  588 (802)
T ss_pred             hhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCC-CceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH-HHhhh
Confidence            35799999999999999999999999999999764 59999999999999999999999999999999999986 79999


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . +..++.+|+++    +...||||||||+|++.+.|+...  ...+.++.+.||..||+..             ++.++
T Consensus       589 S-ErAVR~vFqRA----R~saPCVIFFDEiDaL~p~R~~~~--s~~s~RvvNqLLtElDGl~-------------~R~gV  648 (802)
T KOG0733|consen  589 S-ERAVRQVFQRA----RASAPCVIFFDEIDALVPRRSDEG--SSVSSRVVNQLLTELDGLE-------------ERRGV  648 (802)
T ss_pred             H-HHHHHHHHHHh----hcCCCeEEEecchhhcCcccCCCC--chhHHHHHHHHHHHhcccc-------------cccce
Confidence            8 88899999998    677999999999999999987643  5667889999999999863             23349


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||+       ++-+|+|++|  |||+.+..+.|+.+.
T Consensus       649 ~viaATNR-------PDiIDpAiLRPGRlDk~LyV~lPn~~e  683 (802)
T KOG0733|consen  649 YVIAATNR-------PDIIDPAILRPGRLDKLLYVGLPNAEE  683 (802)
T ss_pred             EEEeecCC-------CcccchhhcCCCccCceeeecCCCHHH
Confidence            99999999       8899999999  999996666666654

>KOG0739|consensus

Probab=99.97  E-value=7.3e-31  Score=206.39  Aligned_cols=170  Identities=23%  Similarity=0.354  Sum_probs=146.0

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .|.|++.+|+.|.+++..+.+-++...+-+  .|.+++|||||||||||.||+++|.+.+..|+.++.+++.+ +|.|+.
T Consensus       134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR--~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS-KWmGES  210 (439)
T KOG0739|consen  134 DVAGLEGAKEALKEAVILPIKFPQLFTGKR--KPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGES  210 (439)
T ss_pred             hhccchhHHHHHHhheeecccchhhhcCCC--CcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH-HHhccH
Confidence            468999999999999988877666654333  45679999999999999999999999999999999999986 799998


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF  165 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  165 (225)
                       ++.+..+|..+    +...|+||||||||.++..|+..  ...+.+++...|+-.|.+...            ++.++.
T Consensus       211 -EkLVknLFemA----Re~kPSIIFiDEiDslcg~r~en--EseasRRIKTEfLVQMqGVG~------------d~~gvL  271 (439)
T KOG0739|consen  211 -EKLVKNLFEMA----RENKPSIIFIDEIDSLCGSRSEN--ESEASRRIKTEFLVQMQGVGN------------DNDGVL  271 (439)
T ss_pred             -HHHHHHHHHHH----HhcCCcEEEeehhhhhccCCCCC--chHHHHHHHHHHHHhhhcccc------------CCCceE
Confidence             88899999887    67799999999999999887653  345667899999999998652            223399


Q ss_pred             EEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         166 NIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       166 ~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++++||++|       -||.|++|||+++|++|.|+.-.
T Consensus       272 VLgATNiPw-------~LDsAIRRRFekRIYIPLPe~~A  303 (439)
T KOG0739|consen  272 VLGATNIPW-------VLDSAIRRRFEKRIYIPLPEAHA  303 (439)
T ss_pred             EEecCCCch-------hHHHHHHHHhhcceeccCCcHHH
Confidence            999999988       89999999999999999999754

>KOG0736|consensus

Probab=99.97  E-value=5.6e-31  Score=228.10  Aligned_cols=174  Identities=24%  Similarity=0.344  Sum_probs=148.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      ++|.|.+++|..+.+.+..++++++... .++ .++.+||||||||||||.+|+++|.++...|+.+.+.++.. .|+|+
T Consensus       672 dDVGGLeevK~eIldTIqlPL~hpeLfs-sgl-rkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN-MYVGq  748 (953)
T KOG0736|consen  672 DDVGGLEEVKTEILDTIQLPLKHPELFS-SGL-RKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN-MYVGQ  748 (953)
T ss_pred             hcccCHHHHHHHHHHHhcCcccChhhhh-ccc-cccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH-HHhcc
Confidence            4579999999999999999888876543 222 34569999999999999999999999999999999999986 59999


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . +++++.+|+++    +.+.||||||||+|++.|.|+..+....--+++...|+..||+....         +.+.  +
T Consensus       749 S-E~NVR~VFerA----R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~---------~s~~--V  812 (953)
T KOG0736|consen  749 S-EENVREVFERA----RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS---------SSQD--V  812 (953)
T ss_pred             h-HHHHHHHHHHh----hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC---------CCCc--e
Confidence            8 88999999998    77899999999999999999887755556678999999999986421         2333  9


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||+       ++-||+|++|  |||+-++...++.++
T Consensus       813 FViGATNR-------PDLLDpALLRPGRFDKLvyvG~~~d~e  847 (953)
T KOG0736|consen  813 FVIGATNR-------PDLLDPALLRPGRFDKLVYVGPNEDAE  847 (953)
T ss_pred             EEEecCCC-------ccccChhhcCCCccceeEEecCCccHH
Confidence            99999999       9999999999  999997776666554

>KOG0733|consensus

Probab=99.97  E-value=5.9e-31  Score=223.22  Aligned_cols=174  Identities=22%  Similarity=0.350  Sum_probs=148.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|.|.++...+|.+.+.. ..+++.+...++. |+++||||||||||||+||+++|++++.||+.+++..+.+ ++.|+
T Consensus       190 ~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~-PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS-GvSGE  266 (802)
T KOG0733|consen  190 SDIGGLDKTLAELCELIIH-IKHPEVFSSLGVR-PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS-GVSGE  266 (802)
T ss_pred             hhccChHHHHHHHHHHHHH-hcCchhHhhcCCC-CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc-ccCcc
Confidence            4679999999999887754 7788888888885 5569999999999999999999999999999999999985 89999


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ++.++.+|..+    ....|||+||||||.+.++|....  ....+++...|+..||+....-         .....+
T Consensus       267 S-EkkiRelF~~A----~~~aPcivFiDeIDAI~pkRe~aq--reMErRiVaQLlt~mD~l~~~~---------~~g~~V  330 (802)
T KOG0733|consen  267 S-EKKIRELFDQA----KSNAPCIVFIDEIDAITPKREEAQ--REMERRIVAQLLTSMDELSNEK---------TKGDPV  330 (802)
T ss_pred             c-HHHHHHHHHHH----hccCCeEEEeecccccccchhhHH--HHHHHHHHHHHHHhhhcccccc---------cCCCCe
Confidence            8 77899999987    567899999999999999987642  3345678899999999865331         112239


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||+       ++.+|+|++|  |||++|....|++.+
T Consensus       331 lVIgATnR-------PDslDpaLRRaGRFdrEI~l~vP~e~a  365 (802)
T KOG0733|consen  331 LVIGATNR-------PDSLDPALRRAGRFDREICLGVPSETA  365 (802)
T ss_pred             EEEecCCC-------CcccCHHHhccccccceeeecCCchHH
Confidence            99999999       9999999999  999999999888866

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.96  E-value=1.1e-29  Score=196.30  Aligned_cols=168  Identities=27%  Similarity=0.388  Sum_probs=133.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+||+++|..++-.+. .+.++...   +- +.+++||||||||||||++|+++|++.+.|++.+++..+.. .|+|+
T Consensus       121 ddViGqEeAK~kcrli~~-yLenPe~F---g~-WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG-ehVGd  194 (368)
T COG1223         121 DDVIGQEEAKRKCRLIME-YLENPERF---GD-WAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG-EHVGD  194 (368)
T ss_pred             hhhhchHHHHHHHHHHHH-HhhChHHh---cc-cCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH-HHhhh
Confidence            457999999988865432 22233222   22 44569999999999999999999999999999999988874 57887


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...+..++.++    +...|||+||||+|.+.-+|.-..=+ ..-.++.++|+..||+..             ++-++
T Consensus       195 g-ar~Ihely~rA----~~~aPcivFiDE~DAiaLdRryQelR-GDVsEiVNALLTelDgi~-------------eneGV  255 (368)
T COG1223         195 G-ARRIHELYERA----RKAAPCIVFIDELDAIALDRRYQELR-GDVSEIVNALLTELDGIK-------------ENEGV  255 (368)
T ss_pred             H-HHHHHHHHHHH----HhcCCeEEEehhhhhhhhhhhHHHhc-ccHHHHHHHHHHhccCcc-------------cCCce
Confidence            6 66678888877    67799999999999999877544311 122347899999999854             22339


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||.       ++-||+|+++||...|+|..|+.++
T Consensus       256 vtIaaTN~-------p~~LD~aiRsRFEeEIEF~LP~~eE  288 (368)
T COG1223         256 VTIAATNR-------PELLDPAIRSRFEEEIEFKLPNDEE  288 (368)
T ss_pred             EEEeecCC-------hhhcCHHHHhhhhheeeeeCCChHH
Confidence            99999999       8899999999999999999999876

>KOG0727|consensus

Probab=99.96  E-value=2.7e-29  Score=193.84  Aligned_cols=172  Identities=26%  Similarity=0.364  Sum_probs=141.6

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .|.|.+-.|+.+++++..++-+...++.+++. |+++||+|||||||||+|++++|+.....|+++.++.+.. +|.|+.
T Consensus       156 diggld~qkqeireavelplt~~~ly~qigid-pprgvllygppg~gktml~kava~~t~a~firvvgsefvq-kylgeg  233 (408)
T KOG0727|consen  156 DIGGLDVQKQEIREAVELPLTHADLYKQIGID-PPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ-KYLGEG  233 (408)
T ss_pred             ccccchhhHHHHHHHHhccchHHHHHHHhCCC-CCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH-HHhccC
Confidence            57899999999999999999888888888885 4569999999999999999999999999999999999986 799987


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                       -.+++.+|..+    +...|+|+||||+|++..+|=... +.+..-+++.-.|+..||++..           ..+  +
T Consensus       234 -prmvrdvfrla----kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq-----------~~n--v  295 (408)
T KOG0727|consen  234 -PRMVRDVFRLA----KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ-----------TTN--V  295 (408)
T ss_pred             -cHHHHHHHHHH----hccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc-----------ccc--e
Confidence             56788888776    667899999999999987763332 3333333444455556666432           223  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      -+|++||+       .+.+|||++|  |+|++|+||.|+..+
T Consensus       296 kvimatnr-------adtldpallrpgrldrkiefplpdrrq  330 (408)
T KOG0727|consen  296 KVIMATNR-------ADTLDPALLRPGRLDRKIEFPLPDRRQ  330 (408)
T ss_pred             EEEEecCc-------ccccCHhhcCCccccccccCCCCchhh
Confidence            89999999       7889999999  999999999999987

>KOG0734|consensus

Probab=99.96  E-value=3.4e-29  Score=209.80  Aligned_cols=178  Identities=24%  Similarity=0.320  Sum_probs=143.4

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g   83 (225)
                      .+++.|.+++|++|.+.+ .+++.+..+...+-..|+ +|||+||||||||+|||++|.+.+.||++..++.+.+ -|+|
T Consensus       303 F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPK-GVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE-m~VG  379 (752)
T KOG0734|consen  303 FEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPK-GVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE-MFVG  379 (752)
T ss_pred             cccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCC-ceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh-hhhc
Confidence            356799999999998855 444555555555555555 8999999999999999999999999999999999986 5999


Q ss_pred             CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      .. ...++.+|+.+    ++..||||||||+|+++.+|......  ...-..+.|+..||++.             ++-+
T Consensus       380 vG-ArRVRdLF~aA----k~~APcIIFIDEiDavG~kR~~~~~~--y~kqTlNQLLvEmDGF~-------------qNeG  439 (752)
T KOG0734|consen  380 VG-ARRVRDLFAAA----KARAPCIIFIDEIDAVGGKRNPSDQH--YAKQTLNQLLVEMDGFK-------------QNEG  439 (752)
T ss_pred             cc-HHHHHHHHHHH----HhcCCeEEEEechhhhcccCCccHHH--HHHHHHHHHHHHhcCcC-------------cCCc
Confidence            87 66789999887    67799999999999999887543211  22335677888888854             3334


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc--chhcccC
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN--YNLICET  211 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~--~~l~~~~  211 (225)
                      +++|++||.       ++.||+|+.|  |||+.|..|.|+-..  ++|..++
T Consensus       440 iIvigATNf-------pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl  484 (752)
T KOG0734|consen  440 IIVIGATNF-------PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYL  484 (752)
T ss_pred             eEEEeccCC-------hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHH
Confidence            999999999       9999999999  999999999999876  4444443

>KOG0728|consensus

Probab=99.95  E-value=4.7e-29  Score=192.27  Aligned_cols=173  Identities=24%  Similarity=0.366  Sum_probs=145.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|.|++++++.+++-+..+.+++...+..++..|+ ++|||||||||||.+|+++|....+.|++++++.+.. +|.|+
T Consensus       147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK-GvlLygppgtGktLlaraVahht~c~firvsgselvq-k~ige  224 (404)
T KOG0728|consen  147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK-GVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQ-KYIGE  224 (404)
T ss_pred             HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc-ceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHH-HHhhh
Confidence            467899999999999999999999999999997766 8999999999999999999999999999999999986 69998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . +..++.+|-.+    +...|+|+|+||||+++..|...+ +.+..-++..-.|+..||++..+           .+  
T Consensus       225 g-srmvrelfvma----rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat-----------kn--  286 (404)
T KOG0728|consen  225 G-SRMVRELFVMA----REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT-----------KN--  286 (404)
T ss_pred             h-HHHHHHHHHHH----HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc-----------cc--
Confidence            7 67788887665    667899999999999998876554 44444444555566666665422           23  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +-+|.+||+       .+-+|+|++|  |+|++|+||+|+++.
T Consensus       287 ikvimatnr-------idild~allrpgridrkiefp~p~e~a  322 (404)
T KOG0728|consen  287 IKVIMATNR-------IDILDPALLRPGRIDRKIEFPPPNEEA  322 (404)
T ss_pred             eEEEEeccc-------cccccHhhcCCCcccccccCCCCCHHH
Confidence            888999999       7789999999  999999999999876

>KOG0652|consensus

Probab=99.95  E-value=3.1e-28  Score=188.78  Aligned_cols=173  Identities=20%  Similarity=0.310  Sum_probs=141.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      ..|.|.+++++.|.+++..+..+.....+.++..|+ ++|+|||||||||.+||+.|...+..|..+.+..+.. -|.|+
T Consensus       171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK-GvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ-MfIGd  248 (424)
T KOG0652|consen  171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK-GVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ-MFIGD  248 (424)
T ss_pred             cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC-ceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh-hhhcc
Confidence            468999999999999999999998888888986554 8999999999999999999999999999999988876 48887


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . .+.++..|..+    +...|+|+||||+|.++.+|-... ..+..-++..-.|+..||++.           +...  
T Consensus       249 G-AkLVRDAFaLA----KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs-----------s~~~--  310 (424)
T KOG0652|consen  249 G-AKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS-----------SDDR--  310 (424)
T ss_pred             h-HHHHHHHHHHh----hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC-----------Cccc--
Confidence            6 67788887766    667899999999999998764322 333333333444555556643           2233  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +-+|++||+       .+-+|||++|  |+|++|+||.|.++.
T Consensus       311 vKviAATNR-------vDiLDPALlRSGRLDRKIEfP~Pne~a  346 (424)
T KOG0652|consen  311 VKVIAATNR-------VDILDPALLRSGRLDRKIEFPHPNEEA  346 (424)
T ss_pred             eEEEeeccc-------ccccCHHHhhcccccccccCCCCChHH
Confidence            889999999       6789999999  999999999999976

>KOG0737|consensus

Probab=99.94  E-value=2.1e-27  Score=191.89  Aligned_cols=174  Identities=22%  Similarity=0.327  Sum_probs=147.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|.|++.+++.+.+.+..+..++..+....+..+..+|||+||||||||++|+++|++.+.+|+.+..+.+.+ +|.|+
T Consensus        92 ~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~-KWfgE  170 (386)
T KOG0737|consen   92 DDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS-KWFGE  170 (386)
T ss_pred             hhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch-hhHHH
Confidence            46899999999999999999999888877777788899999999999999999999999999999999999987 78888


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . .+.++.+|..+    .+-+|+++||||+|++...|..  +.........+.++...|+....         +...  +
T Consensus       171 ~-eKlv~AvFslA----sKl~P~iIFIDEvds~L~~R~s--~dHEa~a~mK~eFM~~WDGl~s~---------~~~r--V  232 (386)
T KOG0737|consen  171 A-QKLVKAVFSLA----SKLQPSIIFIDEVDSFLGQRRS--TDHEATAMMKNEFMALWDGLSSK---------DSER--V  232 (386)
T ss_pred             H-HHHHHHHHhhh----hhcCcceeehhhHHHHHhhccc--chHHHHHHHHHHHHHHhccccCC---------CCce--E
Confidence            7 78888888876    5679999999999999988732  22333444677788888875432         2233  9


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +++++||+       +.++|+|++||+.+++..+.|+.++
T Consensus       233 lVlgATNR-------P~DlDeAiiRR~p~rf~V~lP~~~q  265 (386)
T KOG0737|consen  233 LVLGATNR-------PFDLDEAIIRRLPRRFHVGLPDAEQ  265 (386)
T ss_pred             EEEeCCCC-------CccHHHHHHHhCcceeeeCCCchhh
Confidence            99999999       5599999999999998888888776

>KOG0726|consensus

Probab=99.94  E-value=1.5e-27  Score=187.24  Aligned_cols=174  Identities=22%  Similarity=0.313  Sum_probs=143.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      ..|.|.+.+++.+.+++..++-++.-+...++..| .+|+|||+||||||.||+++|+.....|+++-++++.. +|.|+
T Consensus       185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpP-KGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQ-kylGd  262 (440)
T KOG0726|consen  185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPP-KGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQ-KYLGD  262 (440)
T ss_pred             cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCC-CeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHH-HHhcc
Confidence            35799999999999999999999999998998655 48999999999999999999999999999999999987 69998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . .+.++.+|+.+    ....|+|+||||||.+..+|=..  +....+++|..++++|.....-          ..+..+
T Consensus       263 G-pklvRqlF~vA----~e~apSIvFiDEIdAiGtKRyds--~SggerEiQrtmLELLNQldGF----------dsrgDv  325 (440)
T KOG0726|consen  263 G-PKLVRELFRVA----EEHAPSIVFIDEIDAIGTKRYDS--NSGGEREIQRTMLELLNQLDGF----------DSRGDV  325 (440)
T ss_pred             c-hHHHHHHHHHH----HhcCCceEEeehhhhhccccccC--CCccHHHHHHHHHHHHHhccCc----------cccCCe
Confidence            7 67888998877    66789999999999999876322  2223455677666665433211          112338


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      -+|.+||.       .+.+|||++|  |+|++|.|+.|++..
T Consensus       326 KvimATnr-------ie~LDPaLiRPGrIDrKIef~~pDe~T  360 (440)
T KOG0726|consen  326 KVIMATNR-------IETLDPALIRPGRIDRKIEFPLPDEKT  360 (440)
T ss_pred             EEEEeccc-------ccccCHhhcCCCccccccccCCCchhh
Confidence            89999999       8899999999  999999999999865

>KOG0735|consensus

Probab=99.94  E-value=5.5e-27  Score=202.02  Aligned_cols=171  Identities=25%  Similarity=0.345  Sum_probs=148.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|.|+.++++.|.+.+.++.+.+..+....+..+ .+||||||||||||.||.++|..++..|+.+.+.++.+ +|.|.
T Consensus       667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~-~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~-KyIGa  744 (952)
T KOG0735|consen  667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLR-TGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLS-KYIGA  744 (952)
T ss_pred             eecccHHHHHHHHHHHHhccccchHHHhhCCcccc-cceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHH-HHhcc
Confidence            35699999999999999998888888777777554 48999999999999999999999999999999999985 79999


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ++.++.+|.++    +.+.|||+||||+|++.|+|+.++  ..-.+++.+.|+..||+....             .++
T Consensus       745 S-Eq~vR~lF~rA----~~a~PCiLFFDEfdSiAPkRGhDs--TGVTDRVVNQlLTelDG~Egl-------------~GV  804 (952)
T KOG0735|consen  745 S-EQNVRDLFERA----QSAKPCILFFDEFDSIAPKRGHDS--TGVTDRVVNQLLTELDGAEGL-------------DGV  804 (952)
T ss_pred             c-HHHHHHHHHHh----hccCCeEEEeccccccCcccCCCC--CCchHHHHHHHHHhhcccccc-------------ceE
Confidence            8 88899999998    778999999999999999986543  334567999999999986532             128


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++++|.+       ++-||+|++|  |+|+.+..+.|++.+
T Consensus       805 ~i~aaTsR-------pdliDpALLRpGRlD~~v~C~~P~~~e  839 (952)
T KOG0735|consen  805 YILAATSR-------PDLIDPALLRPGRLDKLVYCPLPDEPE  839 (952)
T ss_pred             EEEEecCC-------ccccCHhhcCCCccceeeeCCCCCcHH
Confidence            88888877       8899999999  999999999999865

>KOG0731|consensus

Probab=99.93  E-value=1.1e-26  Score=204.10  Aligned_cols=173  Identities=27%  Similarity=0.359  Sum_probs=147.1

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g   83 (225)
                      .+++.|.+++|++|.+.+ .+++++..+.+.+...|+ ++||+||||||||.||+++|.+.+.||+.++++++.+ .|.|
T Consensus       310 FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPk-GvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE-~~~g  386 (774)
T KOG0731|consen  310 FKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPK-GVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE-MFVG  386 (774)
T ss_pred             cccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcC-ceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH-Hhcc
Confidence            357899999999999955 666778888888887665 8999999999999999999999999999999999987 4777


Q ss_pred             CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccc--cCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910          84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDV--VSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~--~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                      .. ...++.+|..+    +...|+|+|+||+|.+...+..  ..+.+.+.+...+.|+..||+....           ..
T Consensus       387 ~~-asrvr~lf~~a----r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-----------~~  450 (774)
T KOG0731|consen  387 VG-ASRVRDLFPLA----RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-----------KG  450 (774)
T ss_pred             cc-hHHHHHHHHHh----hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-----------Cc
Confidence            66 66788999887    6779999999999999999853  2245556667889999999986432           22


Q ss_pred             CceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                        ++++++||+       ++.+|+|++|  |||+.|..+.|+...
T Consensus       451 --vi~~a~tnr-------~d~ld~allrpGRfdr~i~i~~p~~~~  486 (774)
T KOG0731|consen  451 --VIVLAATNR-------PDILDPALLRPGRFDRQIQIDLPDVKG  486 (774)
T ss_pred             --EEEEeccCC-------ccccCHHhcCCCccccceeccCCchhh
Confidence              899999999       8899999999  999999999998865

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.4e-26  Score=202.19  Aligned_cols=171  Identities=26%  Similarity=0.367  Sum_probs=144.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      ..++|++.+++.+.+.+.++..++..+...+... ..++||+||||||||++|+++|++++.+|+.+.++++.+ +|.|+
T Consensus       242 ~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~-~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s-k~vGe  319 (494)
T COG0464         242 DDIGGLEEAKEELKEAIETPLKRPELFRKLGLRP-PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS-KWVGE  319 (494)
T ss_pred             ehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCC-CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc-cccch
Confidence            3568899999999999988888877665545533 348999999999999999999999999999999998875 79998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ++.++.+|..+    .+..|+||||||+|++.+.++...  +.+..++.+.|+..|++...           ..+  +
T Consensus       320 s-ek~ir~~F~~A----~~~~p~iiFiDEiDs~~~~r~~~~--~~~~~r~~~~lL~~~d~~e~-----------~~~--v  379 (494)
T COG0464         320 S-EKNIRELFEKA----RKLAPSIIFIDEIDSLASGRGPSE--DGSGRRVVGQLLTELDGIEK-----------AEG--V  379 (494)
T ss_pred             H-HHHHHHHHHHH----HcCCCcEEEEEchhhhhccCCCCC--chHHHHHHHHHHHHhcCCCc-----------cCc--e
Confidence            7 88899999887    567899999999999999875432  22236799999999986532           223  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||.       ++.+|+|++|  ||++.+.++.|+.+.
T Consensus       380 ~vi~aTN~-------p~~ld~a~lR~gRfd~~i~v~~pd~~~  414 (494)
T COG0464         380 LVIAATNR-------PDDLDPALLRPGRFDRLIYVPLPDLEE  414 (494)
T ss_pred             EEEecCCC-------ccccCHhhcccCccceEeecCCCCHHH
Confidence            99999999       6699999999  999999999999977

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=99.93  E-value=2.4e-26  Score=191.25  Aligned_cols=189  Identities=43%  Similarity=0.647  Sum_probs=150.2

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      +|+++|+||+++++.+..++++.|.+........-..+++++||+||||||||++|+++|+.++.+|+.+++..+...+|
T Consensus         9 ~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~   88 (441)
T TIGR00390         9 ELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY   88 (441)
T ss_pred             HHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCc
Confidence            58999999999999999999888777644443344455689999999999999999999999999999999998876789


Q ss_pred             cCCcHHHHHHHHHHhc---------------------------------ch-----------------------------
Q psy5910          82 VGDDVESIIQKLLHEC---------------------------------DY-----------------------------   99 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~---------------------------------~~-----------------------------   99 (225)
                      .|.+.+..++.++..+                                 ..                             
T Consensus        89 vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~  168 (441)
T TIGR00390        89 VGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDK  168 (441)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCc
Confidence            9987777666665443                                 00                             


Q ss_pred             ----h---------------------------------------------------------------------hhhhCC
Q psy5910         100 ----D---------------------------------------------------------------------VELAEQ  106 (225)
Q Consensus       100 ----~---------------------------------------------------------------------~~~~~~  106 (225)
                          .                                                                     -...+.
T Consensus       169 ~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~  248 (441)
T TIGR00390       169 EIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQS  248 (441)
T ss_pred             EEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcC
Confidence                0                                                                     012478


Q ss_pred             CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc-----c
Q psy5910         107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF-----S  181 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~-----~  181 (225)
                      +||||||+|++..+. ...+.+.+++.+|+.||+++|+.....             +...|.|+|++|||+|+|     +
T Consensus       249 GIVfiDEiDKIa~~~-~~~~~DvS~eGVQ~~LLkilEGt~v~~-------------k~~~v~T~~ILFI~~GAF~~~kp~  314 (441)
T TIGR00390       249 GIIFIDEIDKIAKKG-ESSGADVSREGVQRDLLPIVEGSTVNT-------------KYGMVKTDHILFIAAGAFQLAKPS  314 (441)
T ss_pred             CEEEEEchhhhcccC-CCCCCCCCccchhccccccccCceeee-------------cceeEECCceeEEecCCcCCCChh
Confidence            999999999999765 233678999999999999999865442             146799999999999975     5


Q ss_pred             cHHHHHHhhcccccccccccccc
Q psy5910         182 GIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       182 ~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +|=|.+.=||...+.+...+.+.
T Consensus       315 DlIPEl~GR~Pi~v~L~~L~~ed  337 (441)
T TIGR00390       315 DLIPELQGRFPIRVELQALTTDD  337 (441)
T ss_pred             hccHHHhCccceEEECCCCCHHH
Confidence            56677777998888877777664

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=99.93  E-value=1.9e-26  Score=191.87  Aligned_cols=189  Identities=42%  Similarity=0.651  Sum_probs=150.2

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      +|+++|+||+++++.+..++...|++............+.++||+||||||||++|+++|+.++.+|+.+++..+.+.+|
T Consensus        12 ~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~Gy   91 (443)
T PRK05201         12 ELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY   91 (443)
T ss_pred             HhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCc
Confidence            58899999999999999999776665433333333334579999999999999999999999999999999998888889


Q ss_pred             cCCcHHHHHHHHHHhc----------------------------------------------------------------
Q psy5910          82 VGDDVESIIQKLLHEC----------------------------------------------------------------   97 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~----------------------------------------------------------------   97 (225)
                      .|.+.+..++.++..+                                                                
T Consensus        92 vG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~  171 (443)
T PRK05201         92 VGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDK  171 (443)
T ss_pred             ccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCc
Confidence            9988777776666555                                                                


Q ss_pred             -------c--h------------------------------------------------------------hhhh-hCCC
Q psy5910          98 -------D--Y------------------------------------------------------------DVEL-AEQS  107 (225)
Q Consensus        98 -------~--~------------------------------------------------------------~~~~-~~~~  107 (225)
                             .  .                                                            .+.. .+.+
T Consensus       172 ~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~G  251 (443)
T PRK05201        172 EIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNG  251 (443)
T ss_pred             EEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCC
Confidence                   0  0                                                            0122 3789


Q ss_pred             EEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc-----cc
Q psy5910         108 IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF-----SG  182 (225)
Q Consensus       108 vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~-----~~  182 (225)
                      ||||||||++..+.++ .+.+.+++.+|+.||+++|+.....             +...|.|+|++|||+|+|     ++
T Consensus       252 IVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~EG~~v~~-------------k~~~i~T~~ILFI~~GAF~~~kp~D  317 (443)
T PRK05201        252 IVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVEGSTVST-------------KYGMVKTDHILFIASGAFHVSKPSD  317 (443)
T ss_pred             EEEEEcchhhcccCCC-CCCCCCccchhcccccccccceeee-------------cceeEECCceeEEecCCcCCCChhh
Confidence            9999999999987544 4679999999999999999865442             156799999999999974     66


Q ss_pred             HHHHHHhhcccccccccccccc
Q psy5910         183 IENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       183 l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      |-|.+.-||...+.+...+.+.
T Consensus       318 lIPEl~GR~Pi~v~L~~L~~~d  339 (443)
T PRK05201        318 LIPELQGRFPIRVELDALTEED  339 (443)
T ss_pred             ccHHHhCccceEEECCCCCHHH
Confidence            7788888998888887776654

>TIGR03689 pup_AAA proteasome ATPase

Probab=99.93  E-value=8.5e-27  Score=200.42  Aligned_cols=175  Identities=23%  Similarity=0.341  Sum_probs=133.5

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC----------eEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------IIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------~~~~~~~~   75 (225)
                      .|+|++.+++++++.+..++.++..+..+++.. ++++|||||||||||++|+++|+.++.+          |+.+.+..
T Consensus       183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~-p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~e  261 (512)
T TIGR03689       183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKP-PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPE  261 (512)
T ss_pred             HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCC-CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchh
Confidence            478999999999999988777777777677654 4589999999999999999999998654          44445555


Q ss_pred             ccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910          76 FTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK  155 (225)
Q Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~  155 (225)
                      +.. +|.|+. +..++.+|..+........++|+||||+|.+...++...+.+. ...+.+.|+..||+...        
T Consensus       262 Ll~-kyvGet-e~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~-e~~il~~LL~~LDgl~~--------  330 (512)
T TIGR03689       262 LLN-KYVGET-ERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDV-ETTVVPQLLSELDGVES--------  330 (512)
T ss_pred             hcc-cccchH-HHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchH-HHHHHHHHHHHhccccc--------
Confidence            543 577775 5567777776533323347899999999999987654322222 34567888888887431        


Q ss_pred             cCCCCCCceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         156 KNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       156 ~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                         ..+  +++|+|||.       ++.||+|++|  |||.+|.|+.|+.++
T Consensus       331 ---~~~--ViVI~ATN~-------~d~LDpALlRpGRfD~~I~~~~Pd~e~  369 (512)
T TIGR03689       331 ---LDN--VIVIGASNR-------EDMIDPAILRPGRLDVKIRIERPDAEA  369 (512)
T ss_pred             ---CCc--eEEEeccCC-------hhhCCHhhcCccccceEEEeCCCCHHH
Confidence               122  899999999       7799999999  999999999999877

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=99.92  E-value=5.2e-26  Score=191.76  Aligned_cols=173  Identities=24%  Similarity=0.348  Sum_probs=133.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++.+++++.+.+..++.++..+...++. +++++||+||||||||++|+++|+.++.+++.+.+..+.. .|.|.
T Consensus       145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~-~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~-k~~ge  222 (398)
T PTZ00454        145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGID-PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ-KYLGE  222 (398)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC-CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH-Hhcch
Confidence            358999999999999998888877777777765 4468999999999999999999999999999998877754 57777


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|..+    ....|+||||||+|.+...+.... +.+....++...|+..|++...           ..+  
T Consensus       223 ~-~~~lr~lf~~A----~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~-----------~~~--  284 (398)
T PTZ00454        223 G-PRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ-----------TTN--  284 (398)
T ss_pred             h-HHHHHHHHHHH----HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC-----------CCC--
Confidence            5 55667777665    456899999999999987764322 1222223344455556654321           122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|++||.       ++.+|++++|  ||+.+|.|+.|+.++
T Consensus       285 v~VI~aTN~-------~d~LDpAllR~GRfd~~I~~~~P~~~~  320 (398)
T PTZ00454        285 VKVIMATNR-------ADTLDPALLRPGRLDRKIEFPLPDRRQ  320 (398)
T ss_pred             EEEEEecCC-------chhCCHHHcCCCcccEEEEeCCcCHHH
Confidence            888999998       7799999999  999999999999876

>KOG0729|consensus

Probab=99.92  E-value=7e-26  Score=176.20  Aligned_cols=172  Identities=22%  Similarity=0.292  Sum_probs=140.8

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .|.|-.+.++.+++.+..++-++..+...++..|+ +||+|||||||||.+||++|+..+.-|+++-++.+.. +|+|+.
T Consensus       178 dvggckeqieklrevve~pll~perfv~lgidppk-gvllygppgtgktl~aravanrtdacfirvigselvq-kyvgeg  255 (435)
T KOG0729|consen  178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK-GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQ-KYVGEG  255 (435)
T ss_pred             cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC-ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHH-HHhhhh
Confidence            57899999999999999888888888888886554 8999999999999999999999999999999999986 799987


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                       ..+++.+|+.+    +...-|++||||+|.+...|=..+ +.+..-++..-.|+..||++.           |..+  +
T Consensus       256 -armvrelf~ma----rtkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd-----------prgn--i  317 (435)
T KOG0729|consen  256 -ARMVRELFEMA----RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD-----------PRGN--I  317 (435)
T ss_pred             -HHHHHHHHHHh----cccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC-----------CCCC--e
Confidence             67888898876    455779999999999987763332 444443344444555555542           3334  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      -++.+||+       ++-+|+|++|  |+|++++|..|+-+.
T Consensus       318 kvlmatnr-------pdtldpallrpgrldrkvef~lpdleg  352 (435)
T KOG0729|consen  318 KVLMATNR-------PDTLDPALLRPGRLDRKVEFGLPDLEG  352 (435)
T ss_pred             EEEeecCC-------CCCcCHhhcCCcccccceeccCCcccc
Confidence            88999999       8899999999  999999999999876

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.92  E-value=1.2e-25  Score=204.04  Aligned_cols=172  Identities=24%  Similarity=0.323  Sum_probs=142.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++.+++.|.+.+.+++.+...+...++..+ .++||+||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus       453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~-~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~-~~vGe  530 (733)
T TIGR01243       453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPP-KGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILS-KWVGE  530 (733)
T ss_pred             hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCC-ceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhh-cccCc
Confidence            35799999999999999887777766666666544 58999999999999999999999999999999998875 69998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . +..++.+|..+    ....++||||||+|++.+.++...+ ....+++.+.|+..|++...           ..+  +
T Consensus       531 s-e~~i~~~f~~A----~~~~p~iifiDEid~l~~~r~~~~~-~~~~~~~~~~lL~~ldg~~~-----------~~~--v  591 (733)
T TIGR01243       531 S-EKAIREIFRKA----RQAAPAIIFFDEIDAIAPARGARFD-TSVTDRIVNQLLTEMDGIQE-----------LSN--V  591 (733)
T ss_pred             H-HHHHHHHHHHH----HhcCCEEEEEEChhhhhccCCCCCC-ccHHHHHHHHHHHHhhcccC-----------CCC--E
Confidence            7 66788888876    5668999999999999987754322 22346688899999997431           123  9


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.||++++|  ||++.|.++.|+.+.
T Consensus       592 ~vI~aTn~-------~~~ld~allRpgRfd~~i~v~~Pd~~~  626 (733)
T TIGR01243       592 VVIAATNR-------PDILDPALLRPGRFDRLILVPPPDEEA  626 (733)
T ss_pred             EEEEeCCC-------hhhCCHhhcCCCccceEEEeCCcCHHH
Confidence            99999999       7799999998  999999999999876

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>CHL00195 ycf46 Ycf46; Provisional

Probab=99.92  E-value=3.3e-25  Score=190.68  Aligned_cols=167  Identities=22%  Similarity=0.300  Sum_probs=127.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++.+|+++.+....+..   ....+++. +++++||+||||||||++|+++|+.++.+++.++++.+.. +|.|+
T Consensus       228 ~dvgGl~~lK~~l~~~~~~~~~---~~~~~gl~-~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~-~~vGe  302 (489)
T CHL00195        228 SDIGGLDNLKDWLKKRSTSFSK---QASNYGLP-TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFG-GIVGE  302 (489)
T ss_pred             HHhcCHHHHHHHHHHHHHHhhH---HHHhcCCC-CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcc-cccCh
Confidence            4689999999988764321111   11223443 3468999999999999999999999999999999988764 68888


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . +..++.+|..+    +...||||||||+|++...+... +......++.+.|+..|++..             ..  +
T Consensus       303 s-e~~l~~~f~~A----~~~~P~IL~IDEID~~~~~~~~~-~d~~~~~rvl~~lL~~l~~~~-------------~~--V  361 (489)
T CHL00195        303 S-ESRMRQMIRIA----EALSPCILWIDEIDKAFSNSESK-GDSGTTNRVLATFITWLSEKK-------------SP--V  361 (489)
T ss_pred             H-HHHHHHHHHHH----HhcCCcEEEehhhhhhhccccCC-CCchHHHHHHHHHHHHHhcCC-------------Cc--e
Confidence            6 66778888765    55689999999999998754322 122334567777888887421             12  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.||++++|  |||..+.++.|+.++
T Consensus       362 ~vIaTTN~-------~~~Ld~allR~GRFD~~i~v~lP~~~e  396 (489)
T CHL00195        362 FVVATANN-------IDLLPLEILRKGRFDEIFFLDLPSLEE  396 (489)
T ss_pred             EEEEecCC-------hhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence            99999999       7799999998  999999999999766

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=99.92  E-value=2.7e-25  Score=181.49  Aligned_cols=152  Identities=18%  Similarity=0.230  Sum_probs=113.4

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhh-hhhCCCEEEEcchhhh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV-ELAEQSIIYIDEIDKI  117 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~vl~iDEid~l  117 (225)
                      ++..++||||||||||++|+++|+.++.+++.++++++.+ +|.|+. ++.++..|..+.... .+.+||||||||+|++
T Consensus       147 ~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s-k~vGEs-Ek~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~  224 (413)
T PLN00020        147 VPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES-ENAGEP-GKLIRQRYREAADIIKKKGKMSCLFINDLDAG  224 (413)
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc-CcCCcH-HHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence            3457889999999999999999999999999999999985 799988 888999998874322 2347999999999999


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCc-CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hcccc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNL-SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQE  194 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~  194 (225)
                      .+.++.. ......+.+...|+.+||+... ..+.  .+.......++++|+|||.       ++.||++++|  |||+.
T Consensus       225 ~g~r~~~-~~tv~~qiV~~tLLnl~D~p~~v~l~G--~w~~~~~~~~V~VIaTTNr-------pd~LDpALlRpGRfDk~  294 (413)
T PLN00020        225 AGRFGTT-QYTVNNQMVNGTLMNIADNPTNVSLGG--DWREKEEIPRVPIIVTGND-------FSTLYAPLIRDGRMEKF  294 (413)
T ss_pred             CCCCCCC-CcchHHHHHHHHHHHHhcCCccccccc--cccccccCCCceEEEeCCC-------cccCCHhHcCCCCCCce
Confidence            9987532 2222334455789999986321 1111  0101112233899999999       8899999999  99997


Q ss_pred             cccccccccc
Q psy5910         195 TNFLEKLNNN  204 (225)
Q Consensus       195 i~~~~~~~~~  204 (225)
                      +.  .|+.+.
T Consensus       295 i~--lPd~e~  302 (413)
T PLN00020        295 YW--APTRED  302 (413)
T ss_pred             eC--CCCHHH
Confidence            64  566654

>KOG0651|consensus

Probab=99.91  E-value=1.3e-24  Score=171.84  Aligned_cols=174  Identities=20%  Similarity=0.302  Sum_probs=143.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.+.|.-..+..+++-+..++.++......++..|. +++||||||||||.+|++++...+..++.+..+.+.+ +|.|+
T Consensus       132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pk-g~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~-kyiGE  209 (388)
T KOG0651|consen  132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPK-GLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVD-KYIGE  209 (388)
T ss_pred             HHhCChHHHHHHHHhheEeeccCchhccccCCCCCc-eeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhh-hhccc
Confidence            356788889999999888888887777666765554 8889999999999999999999999999999999986 79998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...++.+|..+    +...+||+|+||+|.+...+..  ....+.+.+|..|++++++...-          ....++
T Consensus       210 s-aRlIRemf~yA----~~~~pciifmdeiDAigGRr~s--e~Ts~dreiqrTLMeLlnqmdgf----------d~l~rV  272 (388)
T KOG0651|consen  210 S-ARLIRDMFRYA----REVIPCIIFMDEIDAIGGRRFS--EGTSSDREIQRTLMELLNQMDGF----------DTLHRV  272 (388)
T ss_pred             H-HHHHHHHHHHH----hhhCceEEeehhhhhhccEEec--cccchhHHHHHHHHHHHHhhccc----------hhcccc
Confidence            7 78899999887    5668899999999999988733  23455677899999888753211          222348


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      -+|+|+|.       |+-|++|++|  |+++++..|.|.+..
T Consensus       273 k~ImatNr-------pdtLdpaLlRpGRldrk~~iPlpne~~  307 (388)
T KOG0651|consen  273 KTIMATNR-------PDTLDPALLRPGRLDRKVEIPLPNEQA  307 (388)
T ss_pred             cEEEecCC-------ccccchhhcCCccccceeccCCcchhh
Confidence            89999999       8999999999  999999999998765

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=5.7e-25  Score=190.22  Aligned_cols=172  Identities=26%  Similarity=0.364  Sum_probs=142.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      ..+.|.+++|+.+.+.+ .+++.+..+...+...|+ ++||+||||||||+||+++|.+.+.||+.++++++.+ -|+|.
T Consensus       150 ~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPk-GvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVe-mfVGv  226 (596)
T COG0465         150 ADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPK-GVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-MFVGV  226 (596)
T ss_pred             hhhcCcHHHHHHHHHHH-HHHhCchhhHhccccccc-ceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhh-hhcCC
Confidence            35689999999999855 455666666666775554 8999999999999999999999999999999999987 48888


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|.++    ++..|||+||||+|++..+|.... +.....+-+.+.|+..||+...             +..
T Consensus       227 G-AsRVRdLF~qA----kk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~-------------~~g  288 (596)
T COG0465         227 G-ASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG-------------NEG  288 (596)
T ss_pred             C-cHHHHHHHHHh----hccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC-------------CCc
Confidence            7 66788999887    677899999999999999986543 4444555588899999998652             122


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++++++||+       ++-+|+|++|  |||++|-.+.|+-..
T Consensus       289 viviaaTNR-------pdVlD~ALlRpgRFDRqI~V~~PDi~g  324 (596)
T COG0465         289 VIVIAATNR-------PDVLDPALLRPGRFDRQILVELPDIKG  324 (596)
T ss_pred             eEEEecCCC-------cccchHhhcCCCCcceeeecCCcchhh
Confidence            999999999       8889999999  999999999998533

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=99.91  E-value=3.1e-25  Score=187.60  Aligned_cols=174  Identities=26%  Similarity=0.359  Sum_probs=132.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.+.+.+..++.+...+..+++..+ .++||+||||||||++|+++|+.++.+++.+++..+.. .|.|.
T Consensus       131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p-~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~-~~~g~  208 (389)
T PRK03992        131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP-KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ-KFIGE  208 (389)
T ss_pred             HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC-CceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH-hhccc
Confidence            45789999999999998877777766666676544 58999999999999999999999999999999988864 57777


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...++.+|..+    ....++||||||+|.+...+.....  .....++..+.+++......        ....+  +
T Consensus       209 ~-~~~i~~~f~~a----~~~~p~IlfiDEiD~l~~~r~~~~~--~~~~~~~~~l~~lL~~ld~~--------~~~~~--v  271 (389)
T PRK03992        209 G-ARLVRELFELA----REKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAEMDGF--------DPRGN--V  271 (389)
T ss_pred             h-HHHHHHHHHHH----HhcCCeEEEEechhhhhcccccCCC--CccHHHHHHHHHHHHhcccc--------CCCCC--E
Confidence            5 55667777665    4457899999999999877654321  11233555555555432110        01112  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.+|++++|  ||+..|.++.|+.++
T Consensus       272 ~VI~aTn~-------~~~ld~allRpgRfd~~I~v~~P~~~~  306 (389)
T PRK03992        272 KIIAATNR-------IDILDPAILRPGRFDRIIEVPLPDEEG  306 (389)
T ss_pred             EEEEecCC-------hhhCCHHHcCCccCceEEEECCCCHHH
Confidence            89999999       6799999998  999999999999876

>KOG0740|consensus

Probab=99.91  E-value=1.8e-24  Score=180.33  Aligned_cols=172  Identities=24%  Similarity=0.353  Sum_probs=143.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.+.|++.+++.+.+.+.++..++....+.  ..+.+++||.||||+|||+|+++||.+++..|+.++++.+.. +|.|+
T Consensus       153 ~di~gl~~~k~~l~e~vi~p~lr~d~F~gl--r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLts-K~~Ge  229 (428)
T KOG0740|consen  153 DDIAGLEDAKQSLKEAVILPLLRPDLFLGL--REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTS-KYVGE  229 (428)
T ss_pred             cCCcchhhHHHHhhhhhhhcccchHhhhcc--ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhh-hccCh
Confidence            467899999999999998888877666543  355679999999999999999999999999999999999985 79999


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ++.++.+|+-+    +..+|+|+||||+|++.-+|..  .......+.+..++-.+++....         +.++  +
T Consensus       230 ~-eK~vralf~vA----r~~qPsvifidEidslls~Rs~--~e~e~srr~ktefLiq~~~~~s~---------~~dr--v  291 (428)
T KOG0740|consen  230 S-EKLVRALFKVA----RSLQPSVIFIDEIDSLLSKRSD--NEHESSRRLKTEFLLQFDGKNSA---------PDDR--V  291 (428)
T ss_pred             H-HHHHHHHHHHH----HhcCCeEEEechhHHHHhhcCC--cccccchhhhhHHHhhhccccCC---------CCCe--E
Confidence            8 88999999877    6779999999999999988832  33445556777766666654322         3334  9


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++++|||.+|       .+|+|++|||.+++.+|.|+.+.
T Consensus       292 lvigaTN~P~-------e~Dea~~Rrf~kr~yiplPd~et  324 (428)
T KOG0740|consen  292 LVIGATNRPW-------ELDEAARRRFVKRLYIPLPDYET  324 (428)
T ss_pred             EEEecCCCch-------HHHHHHHHHhhceeeecCCCHHH
Confidence            9999999955       99999999999999999999877

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=99.91  E-value=7.6e-25  Score=190.95  Aligned_cols=172  Identities=25%  Similarity=0.349  Sum_probs=131.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++++.+.+.. +.+...+...+... ++++||+||||||||++|+++|+.++.+++.+++..+.+ .|.|.
T Consensus        55 ~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~-~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-~~~g~  131 (495)
T TIGR01241        55 KDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVE-MFVGV  131 (495)
T ss_pred             HHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCC-CCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHH-HHhcc
Confidence            3568999999999876643 44444444444433 458999999999999999999999999999999988764 46666


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|..+    ....|+||||||+|.+..+++... +.......+.+.|+..||+...             +.+
T Consensus       132 ~-~~~l~~~f~~a----~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~-------------~~~  193 (495)
T TIGR01241       132 G-ASRVRDLFEQA----KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT-------------NTG  193 (495)
T ss_pred             c-HHHHHHHHHHH----HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC-------------CCC
Confidence            5 45667777765    456789999999999998775432 2233345577788888876421             122


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.+|++++|  ||++.|.++.|+.++
T Consensus       194 v~vI~aTn~-------~~~ld~al~r~gRfd~~i~i~~Pd~~~  229 (495)
T TIGR01241       194 VIVIAATNR-------PDVLDPALLRPGRFDRQVVVDLPDIKG  229 (495)
T ss_pred             eEEEEecCC-------hhhcCHHHhcCCcceEEEEcCCCCHHH
Confidence            899999999       7799999999  999999999999865

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=99.90  E-value=1.2e-24  Score=184.78  Aligned_cols=173  Identities=24%  Similarity=0.368  Sum_probs=130.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|.|++.+++.+.+.+..++.++..+..+++. ++.++||+||||||||++|+++|+.++.+++.+.+..+.. .|.|.
T Consensus       183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~-~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~-k~~Ge  260 (438)
T PTZ00361        183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK-PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ-KYLGD  260 (438)
T ss_pred             HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh-hhcch
Confidence            457999999999999998777776666666664 4458999999999999999999999999999999888765 57777


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|..+    ....++|+||||+|.+..++.... +......+....|+..|++..           ...+  
T Consensus       261 ~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~-----------~~~~--  322 (438)
T PTZ00361        261 G-PKLVRELFRVA----EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFD-----------SRGD--  322 (438)
T ss_pred             H-HHHHHHHHHHH----HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhc-----------ccCC--
Confidence            5 45567777655    445789999999999987764322 111111223334455555421           1122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +.+|++||.       ++.+|++++|  ||++.|.|+.|+.++
T Consensus       323 V~VI~ATNr-------~d~LDpaLlRpGRfd~~I~~~~Pd~~~  358 (438)
T PTZ00361        323 VKVIMATNR-------IESLDPALIRPGRIDRKIEFPNPDEKT  358 (438)
T ss_pred             eEEEEecCC-------hHHhhHHhccCCeeEEEEEeCCCCHHH
Confidence            888999998       7799999998  999999999999866

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=4.3e-24  Score=170.79  Aligned_cols=189  Identities=43%  Similarity=0.653  Sum_probs=156.9

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      +||++|+||+++|+.+.-++.+.|++......+.-..-+.++|++||+|+|||.+||.+|+..+.||+.+.+.-+.+-||
T Consensus        12 eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGY   91 (444)
T COG1220          12 ELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGY   91 (444)
T ss_pred             HHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeeccc
Confidence            58999999999999999999999998877777777777889999999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHhc----------------------------------------------------------------
Q psy5910          82 VGDDVESIIQKLLHEC----------------------------------------------------------------   97 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~----------------------------------------------------------------   97 (225)
                      +|.+++.+++.+...+                                                                
T Consensus        92 VGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkLr~GeLdd~  171 (444)
T COG1220          92 VGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKLREGELDDK  171 (444)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHHHcCCCCcc
Confidence            9999998887766544                                                                


Q ss_pred             ----------------------------------------------------------------------chhhh-hhCC
Q psy5910          98 ----------------------------------------------------------------------DYDVE-LAEQ  106 (225)
Q Consensus        98 ----------------------------------------------------------------------~~~~~-~~~~  106 (225)
                                                                                            ...+. ..+.
T Consensus       172 eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~eAi~~aE~~  251 (444)
T COG1220         172 EIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQEAIDAAEQN  251 (444)
T ss_pred             EEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhc
Confidence                                                                                  00011 2378


Q ss_pred             CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc-----c
Q psy5910         107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF-----S  181 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~-----~  181 (225)
                      +|+||||||++..+.+. ++++.+.+.+|-.||.++++...+.             ..-.+.|.+++||++++|     +
T Consensus       252 GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvEGstV~T-------------KyG~VkTdHILFIasGAFh~sKPS  317 (444)
T COG1220         252 GIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVEGSTVST-------------KYGPVKTDHILFIASGAFHVAKPS  317 (444)
T ss_pred             CeEEEehhhHHHhcCCC-CCCCcchhhhcccccccccCceeec-------------cccccccceEEEEecCceecCChh
Confidence            99999999999987653 3448899999999999999855331             144578999999999864     7


Q ss_pred             cHHHHHHhhcccccccccccccc
Q psy5910         182 GIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       182 ~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +|=|.+.=||..+++...-+.+.
T Consensus       318 DLiPELQGRfPIRVEL~~Lt~~D  340 (444)
T COG1220         318 DLIPELQGRFPIRVELDALTKED  340 (444)
T ss_pred             hcChhhcCCCceEEEcccCCHHH
Confidence            88888889999988877666554

>CHL00176 ftsH cell division protein; Validated

Probab=99.88  E-value=2.3e-23  Score=184.51  Aligned_cols=172  Identities=25%  Similarity=0.385  Sum_probs=127.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|.+++++++.+.+.. ++....+...+... ++++||+||||||||++|+++|+.++.|++.++++.+.+ .|.|.
T Consensus       183 ~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~-p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~-~~~g~  259 (638)
T CHL00176        183 RDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKI-PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVE-MFVGV  259 (638)
T ss_pred             HhccChHHHHHHHHHHHHH-HhCHHHHhhccCCC-CceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHH-Hhhhh
Confidence            4579999999999886533 44444444445443 458999999999999999999999999999999988764 46665


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|..+    ....|+||||||+|.+...++... +.....+.+.+.|+..||+..             .+.+
T Consensus       260 ~-~~~vr~lF~~A----~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~-------------~~~~  321 (638)
T CHL00176        260 G-AARVRDLFKKA----KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK-------------GNKG  321 (638)
T ss_pred             h-HHHHHHHHHHH----hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc-------------CCCC
Confidence            4 34566677665    456889999999999987764432 222333345566666666532             1122


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|++||.       ++.+|++++|  ||++.|.++.|+.++
T Consensus       322 ViVIaaTN~-------~~~LD~ALlRpGRFd~~I~v~lPd~~~  357 (638)
T CHL00176        322 VIVIAATNR-------VDILDAALLRPGRFDRQITVSLPDREG  357 (638)
T ss_pred             eeEEEecCc-------hHhhhhhhhccccCceEEEECCCCHHH
Confidence            889999999       7799999998  999999999998866

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=99.87  E-value=5e-23  Score=173.28  Aligned_cols=174  Identities=24%  Similarity=0.315  Sum_probs=126.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.+.+.+..+..+...+..+++..+ .++||+||||||||++|+++++.++.+++.+.+..+.. .|.|.
T Consensus       122 ~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p-~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~-~~~g~  199 (364)
T TIGR01242       122 EDIGGLEEQIREIREAVELPLKHPELFEEVGIEPP-KGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR-KYIGE  199 (364)
T ss_pred             HHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCC-ceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH-HhhhH
Confidence            46899999999999988776666655666666444 58999999999999999999999999999998877653 46665


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...+..+|..+    ....++||||||+|.+...+.....  ..+..++..+.+++......          ....++
T Consensus       200 ~-~~~i~~~f~~a----~~~~p~il~iDEiD~l~~~~~~~~~--~~~~~~~~~l~~ll~~ld~~----------~~~~~v  262 (364)
T TIGR01242       200 G-ARLVREIFELA----KEKAPSIIFIDEIDAIAAKRTDSGT--SGDREVQRTLMQLLAELDGF----------DPRGNV  262 (364)
T ss_pred             H-HHHHHHHHHHH----HhcCCcEEEhhhhhhhccccccCCC--CccHHHHHHHHHHHHHhhCC----------CCCCCE
Confidence            4 34455666544    3457899999999999876543221  11223455555555432110          011128


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      .+|+|||.       ++.+|++++|  ||++.|.++.|+.++
T Consensus       263 ~vI~ttn~-------~~~ld~al~r~grfd~~i~v~~P~~~~  297 (364)
T TIGR01242       263 KVIAATNR-------PDILDPALLRPGRFDRIIEVPLPDFEG  297 (364)
T ss_pred             EEEEecCC-------hhhCChhhcCcccCceEEEeCCcCHHH
Confidence            89999998       6689999998  999999999998766

Many proteins may score above the trusted cutoff because an internal

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.3e-21  Score=169.71  Aligned_cols=188  Identities=20%  Similarity=0.261  Sum_probs=134.7

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc--
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE--   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--   78 (225)
                      .||+..+|++++|+++.+.+......        - .-++++| |+||||+|||+|+++||+.++..|++++.+.+.+  
T Consensus       320 iLd~dHYGLekVKeRIlEyLAV~~l~--------~-~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEA  390 (782)
T COG0466         320 ILDKDHYGLEKVKERILEYLAVQKLT--------K-KLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEA  390 (782)
T ss_pred             HhcccccCchhHHHHHHHHHHHHHHh--------c-cCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHH
Confidence            47888999999999999866222111        0 1123555 9999999999999999999999999999877654  


Q ss_pred             ------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc-Cccc
Q psy5910          79 ------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL-SITS  151 (225)
Q Consensus        79 ------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~~  151 (225)
                            ..|.|.-+.+.++.+-+.      ...+++++|||||++..+..+.         --++||++||.-.. .+.+
T Consensus       391 EIRGHRRTYIGamPGrIiQ~mkka------~~~NPv~LLDEIDKm~ss~rGD---------PaSALLEVLDPEQN~~F~D  455 (782)
T COG0466         391 EIRGHRRTYIGAMPGKIIQGMKKA------GVKNPVFLLDEIDKMGSSFRGD---------PASALLEVLDPEQNNTFSD  455 (782)
T ss_pred             HhccccccccccCChHHHHHHHHh------CCcCCeEEeechhhccCCCCCC---------hHHHHHhhcCHhhcCchhh
Confidence                  358998878888777543      2578899999999999775433         35799999984221 1111


Q ss_pred             cccccCCCCCCceeEEecCcceeeccCc-cccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccCCC
Q psy5910         152 LAEKKNPSQNPQVFNIDTTNILFIAGGA-FSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGIIP  223 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~i~ttn~~~i~~~~-~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~~~  223 (225)
                      .. .        -+-++-|+++||||+| .+.||.++++|... |......+++  ++..+++-|+.+...|+.+
T Consensus       456 hY-L--------ev~yDLS~VmFiaTANsl~tIP~PLlDRMEi-I~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~  520 (782)
T COG0466         456 HY-L--------EVPYDLSKVMFIATANSLDTIPAPLLDRMEV-IRLSGYTEDEKLEIAKRHLIPKQLKEHGLKK  520 (782)
T ss_pred             cc-c--------cCccchhheEEEeecCccccCChHHhcceee-eeecCCChHHHHHHHHHhcchHHHHHcCCCc
Confidence            11 1        1224556666666653 56799999999744 4444444433  8889999999999999874

>KOG0730|consensus

Probab=99.85  E-value=7.4e-22  Score=169.74  Aligned_cols=170  Identities=24%  Similarity=0.363  Sum_probs=143.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      ..+.|.......++..+.+++..+......+... ++++|+|||||||||.+++++|++.+..++.+++..+.. +|.|+
T Consensus       184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~-prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~-k~~gE  261 (693)
T KOG0730|consen  184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKP-PRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELIS-KFPGE  261 (693)
T ss_pred             cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCC-CCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHH-hcccc
Confidence            4678899999999999999999888888888854 459999999999999999999999999999999998875 57787


Q ss_pred             cHHHHHHHHHHhcchhhhhhC-CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAE-QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ++.++..|+.+    ...+ |+++||||+|.+.+++.....   ...++...|+.+||+..           +...  
T Consensus       262 t-e~~LR~~f~~a----~k~~~psii~IdEld~l~p~r~~~~~---~e~Rv~sqlltL~dg~~-----------~~~~--  320 (693)
T KOG0730|consen  262 T-ESNLRKAFAEA----LKFQVPSIIFIDELDALCPKREGADD---VESRVVSQLLTLLDGLK-----------PDAK--  320 (693)
T ss_pred             h-HHHHHHHHHHH----hccCCCeeEeHHhHhhhCCcccccch---HHHHHHHHHHHHHhhCc-----------CcCc--
Confidence            7 77888888887    4455 999999999999998755322   45678999999999754           1122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh-hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN-RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~~i~~~~~~~~~  204 (225)
                      +++++++|.       ++.||++++| |||+.+....|+...
T Consensus       321 vivl~atnr-------p~sld~alRRgRfd~ev~IgiP~~~~  355 (693)
T KOG0730|consen  321 VIVLAATNR-------PDSLDPALRRGRFDREVEIGIPGSDG  355 (693)
T ss_pred             EEEEEecCC-------ccccChhhhcCCCcceeeecCCCchh
Confidence            899999999       8899999999 999998888888655

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=99.85  E-value=4.8e-21  Score=138.38  Aligned_cols=129  Identities=29%  Similarity=0.531  Sum_probs=99.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhC-CCEEEEcchhhhcccc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAE-QSIIYIDEIDKISKKT  121 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~  121 (225)
                      |||+||||||||++|+.+|+.++.+++.+++..+.. .+.+.. ...+..++..+    .... ++|+||||+|.+.+..
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~-~~~~~~-~~~i~~~~~~~----~~~~~~~vl~iDe~d~l~~~~   74 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELIS-SYAGDS-EQKIRDFFKKA----KKSAKPCVLFIDEIDKLFPKS   74 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHT-SSTTHH-HHHHHHHHHHH----HHTSTSEEEEEETGGGTSHHC
T ss_pred             CEEECcCCCCeeHHHHHHHhhccccccccccccccc-cccccc-ccccccccccc----cccccceeeeeccchhccccc
Confidence            689999999999999999999999999999998863 344443 56667777664    3334 8999999999999886


Q ss_pred             cccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHH-hhcccccccc
Q psy5910         122 DVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFII-NRINQETNFL  198 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~-~Rf~~~i~~~  198 (225)
                        ..........+.+.|+..++.....            ..++++|+|+|.       ++.++++++ +||+..+.++
T Consensus        75 --~~~~~~~~~~~~~~L~~~l~~~~~~------------~~~~~vI~ttn~-------~~~i~~~l~~~rf~~~i~~~  131 (132)
T PF00004_consen   75 --QPSSSSFEQRLLNQLLSLLDNPSSK------------NSRVIVIATTNS-------PDKIDPALLRSRFDRRIEFP  131 (132)
T ss_dssp             --STSSSHHHHHHHHHHHHHHHTTTTT------------SSSEEEEEEESS-------GGGSCHHHHSTTSEEEEEE-
T ss_pred             --ccccccccccccceeeecccccccc------------cccceeEEeeCC-------hhhCCHhHHhCCCcEEEEcC
Confidence              1123344556788899999864321            122889999998       789999999 9999988776

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=99.85  E-value=2.8e-22  Score=153.97  Aligned_cols=153  Identities=25%  Similarity=0.344  Sum_probs=91.8

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      |++ ++||+++++.+.-.+.....+.         .+..++|||||||+||||||+.||++++.++...++..+...   
T Consensus        23 L~e-fiGQ~~l~~~l~i~i~aa~~r~---------~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~---   89 (233)
T PF05496_consen   23 LDE-FIGQEHLKGNLKILIRAAKKRG---------EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA---   89 (233)
T ss_dssp             CCC-S-S-HHHHHHHHHHHHHHHCTT---------S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC---
T ss_pred             HHH-ccCcHHHHhhhHHHHHHHHhcC---------CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH---
Confidence            444 4999999998866552222111         123589999999999999999999999999998888665321   


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccc-----ccccC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSL-----AEKKN  157 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~-----~~~~~  157 (225)
                       .+..    .++..      ...+.|+|||||+++.+.             +|+.|+..||.+...+-..     .....
T Consensus        90 -~dl~----~il~~------l~~~~ILFIDEIHRlnk~-------------~qe~LlpamEd~~idiiiG~g~~ar~~~~  145 (233)
T PF05496_consen   90 -GDLA----AILTN------LKEGDILFIDEIHRLNKA-------------QQEILLPAMEDGKIDIIIGKGPNARSIRI  145 (233)
T ss_dssp             -HHHH----HHHHT--------TT-EEEECTCCC--HH-------------HHHHHHHHHHCSEEEEEBSSSSS-BEEEE
T ss_pred             -HHHH----HHHHh------cCCCcEEEEechhhccHH-------------HHHHHHHHhccCeEEEEeccccccceeec
Confidence             1222    22222      146789999999999988             8999999999865432111     11111


Q ss_pred             CCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--ccccccc
Q psy5910         158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLEKL  201 (225)
Q Consensus       158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~~~  201 (225)
                      +-  +.|-+|++|..       ...+.+++++||...  +.|-.++
T Consensus       146 ~l--~~FTligATTr-------~g~ls~pLrdRFgi~~~l~~Y~~~  182 (233)
T PF05496_consen  146 NL--PPFTLIGATTR-------AGLLSSPLRDRFGIVLRLEFYSEE  182 (233)
T ss_dssp             E------EEEEEESS-------GCCTSHCCCTTSSEEEE----THH
T ss_pred             cC--CCceEeeeecc-------ccccchhHHhhcceecchhcCCHH
Confidence            11  22667777766       567899999999886  4444443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=99.85  E-value=1.2e-21  Score=175.00  Aligned_cols=171  Identities=23%  Similarity=0.345  Sum_probs=126.8

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .+.|.+.+++++.+.+.. +.........+...+ ++++|+||||||||++|+++++.++.+++.+++.++.. .|.|..
T Consensus       153 di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~-~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~-~~~g~~  229 (644)
T PRK10733        153 DVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-MFVGVG  229 (644)
T ss_pred             HHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCC-CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHH-hhhccc
Confidence            467888888888775543 222222222233233 47999999999999999999999999999999988764 466765


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                       ...++..|..+    ....|+||||||+|.+...++... +.....+.+.+.|+..||+...           ...  +
T Consensus       230 -~~~~~~~f~~a----~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~-----------~~~--v  291 (644)
T PRK10733        230 -ASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-----------NEG--I  291 (644)
T ss_pred             -HHHHHHHHHHH----HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC-----------CCC--e
Confidence             44566666664    455899999999999998775432 2333445577888888886431           122  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.+|++++|  |||+.+.++.|+.+.
T Consensus       292 ivIaaTN~-------p~~lD~Al~RpgRfdr~i~v~~Pd~~~  326 (644)
T PRK10733        292 IVIAATNR-------PDVLDPALLRPGRFDRQVVVGLPDVRG  326 (644)
T ss_pred             eEEEecCC-------hhhcCHHHhCCcccceEEEcCCCCHHH
Confidence            99999999       8899999999  999999999999755

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=99.85  E-value=1.3e-21  Score=177.87  Aligned_cols=170  Identities=28%  Similarity=0.371  Sum_probs=133.7

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .|+|++++++.+.+.+..+..++..+...++. ++.++||+||||||||++|+++|+.++.+++.+++..+.. .|.|..
T Consensus       179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~-~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~-~~~g~~  256 (733)
T TIGR01243       179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIE-PPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMS-KYYGES  256 (733)
T ss_pred             HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhc-ccccHH
Confidence            47899999999999887776666666666664 3458999999999999999999999999999999988764 577765


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF  165 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  165 (225)
                       ...++.+|+.+    ....++||||||+|.+.++++...  .....++++.|+.+|++...             ...++
T Consensus       257 -~~~l~~lf~~a----~~~~p~il~iDEid~l~~~r~~~~--~~~~~~~~~~Ll~~ld~l~~-------------~~~vi  316 (733)
T TIGR01243       257 -EERLREIFKEA----EENAPSIIFIDEIDAIAPKREEVT--GEVEKRVVAQLLTLMDGLKG-------------RGRVI  316 (733)
T ss_pred             -HHHHHHHHHHH----HhcCCcEEEeehhhhhcccccCCc--chHHHHHHHHHHHHhhcccc-------------CCCEE
Confidence             55677777765    445789999999999998764322  22335688899999986431             11288


Q ss_pred             EEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         166 NIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       166 ~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +|++||.       ++.+|+++++  ||+..+.++.|+.+.
T Consensus       317 vI~atn~-------~~~ld~al~r~gRfd~~i~i~~P~~~~  350 (733)
T TIGR01243       317 VIGATNR-------PDALDPALRRPGRFDREIVIRVPDKRA  350 (733)
T ss_pred             EEeecCC-------hhhcCHHHhCchhccEEEEeCCcCHHH
Confidence            8889998       7789999998  999999998887664

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>KOG0732|consensus

Probab=99.84  E-value=8.6e-22  Score=177.84  Aligned_cols=171  Identities=23%  Similarity=0.319  Sum_probs=140.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-----~~~~~~~~~~~~~~   79 (225)
                      +.|.|++..+.+|++.+..++.+++.+..+++. |+++||++||||||||..|+++|..+.     ..|+.-.+++..+ 
T Consensus       265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~it-pPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ls-  342 (1080)
T KOG0732|consen  265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNIT-PPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLS-  342 (1080)
T ss_pred             cccccHHHHHHHHHHHHHhHhhhhhHhhhcccC-CCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhc-
Confidence            567999999999999999999999999888885 456999999999999999999998882     3355555556553 


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                      +|+|+. +..++.+|..+    ++.+|+|+|+||||-+.+.++.-.  .-....+...|+.+|++...            
T Consensus       343 kwvgEa-ERqlrllFeeA----~k~qPSIIffdeIdGlapvrSskq--Eqih~SIvSTLLaLmdGlds------------  403 (1080)
T KOG0732|consen  343 KWVGEA-ERQLRLLFEEA----QKTQPSIIFFDEIDGLAPVRSSKQ--EQIHASIVSTLLALMDGLDS------------  403 (1080)
T ss_pred             cccCcH-HHHHHHHHHHH----hccCceEEeccccccccccccchH--HHhhhhHHHHHHHhccCCCC------------
Confidence            799987 77788899887    778999999999999998874321  11122377889999998642            


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                       ++++++|++||+       ++.+|+|++|  ||++.+.|+.|+.+.
T Consensus       404 -RgqVvvigATnR-------pda~dpaLRRPgrfdref~f~lp~~~a  442 (1080)
T KOG0732|consen  404 -RGQVVVIGATNR-------PDAIDPALRRPGRFDREFYFPLPDVDA  442 (1080)
T ss_pred             -CCceEEEcccCC-------ccccchhhcCCcccceeEeeeCCchHH
Confidence             233999999999       8899999999  999999999998766

>KOG0744|consensus

Probab=99.84  E-value=1.5e-21  Score=155.52  Aligned_cols=144  Identities=21%  Similarity=0.307  Sum_probs=113.1

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCC--
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ--  106 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--  106 (225)
                      ...+-+|++||||||||+||+++|+.+         ...++.+++..+-+ +|.++. ++.+..+|++....+.. .+  
T Consensus       175 t~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFS-KWFsES-gKlV~kmF~kI~ELv~d-~~~l  251 (423)
T KOG0744|consen  175 TWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFS-KWFSES-GKLVAKMFQKIQELVED-RGNL  251 (423)
T ss_pred             eeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHH-HHHhhh-hhHHHHHHHHHHHHHhC-CCcE
Confidence            344578899999999999999999988         34478888888764 799887 78888999887544332 33  


Q ss_pred             CEEEEcchhhhcccccccC--CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHH
Q psy5910         107 SIIYIDEIDKISKKTDVVS--GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIE  184 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~--~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~  184 (225)
                      -.++|||++++...|....  ..+.+..++.++|+..||...           .+.+  +++.+|||.       .+.||
T Consensus       252 VfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----------~~~N--vliL~TSNl-------~~siD  311 (423)
T KOG0744|consen  252 VFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----------RYPN--VLILATSNL-------TDSID  311 (423)
T ss_pred             EEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----------cCCC--EEEEeccch-------HHHHH
Confidence            3577999999998886554  345566789999999999743           2334  999999999       78999


Q ss_pred             HHHHhhcccccccccccccc
Q psy5910         185 NFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       185 ~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .|+.+|-|.+.+...|..+.
T Consensus       312 ~AfVDRADi~~yVG~Pt~~a  331 (423)
T KOG0744|consen  312 VAFVDRADIVFYVGPPTAEA  331 (423)
T ss_pred             HHhhhHhhheeecCCccHHH
Confidence            99999999997777777665

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=1.9e-21  Score=172.45  Aligned_cols=142  Identities=29%  Similarity=0.394  Sum_probs=114.7

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCcccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSFTE   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~~~   78 (225)
                      .|.++|+||++|++.+.+++.....+.....     .|.+..||.||+|+|||.||+++|..+.   ..+++++++++.+
T Consensus       488 ~L~~rViGQd~AV~avs~aIrraRaGL~dp~-----rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E  562 (786)
T COG0542         488 RLKKRVIGQDEAVEAVSDAIRRARAGLGDPN-----RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME  562 (786)
T ss_pred             HHhcceeChHHHHHHHHHHHHHHhcCCCCCC-----CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH
Confidence            4678999999999999999966665554333     4556788999999999999999999995   7799999987754


Q ss_pred             -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                                 +||+|.+....++...+       ....+||+||||++++|+             +.+.|+++||.+..
T Consensus       563 kHsVSrLIGaPPGYVGyeeGG~LTEaVR-------r~PySViLlDEIEKAHpd-------------V~nilLQVlDdGrL  622 (786)
T COG0542         563 KHSVSRLIGAPPGYVGYEEGGQLTEAVR-------RKPYSVILLDEIEKAHPD-------------VFNLLLQVLDDGRL  622 (786)
T ss_pred             HHHHHHHhCCCCCCceeccccchhHhhh-------cCCCeEEEechhhhcCHH-------------HHHHHHHHhcCCee
Confidence                       68999876666666543       346789999999999999             99999999998544


Q ss_pred             CccccccccCCCCCCceeEEecCcc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                        ....++.-++.|  .++|+|||.
T Consensus       623 --TD~~Gr~VdFrN--tiIImTSN~  643 (786)
T COG0542         623 --TDGQGRTVDFRN--TIIIMTSNA  643 (786)
T ss_pred             --ecCCCCEEecce--eEEEEeccc
Confidence              345566666777  888888888

>KOG2004|consensus

Probab=99.84  E-value=5.9e-21  Score=165.27  Aligned_cols=192  Identities=22%  Similarity=0.285  Sum_probs=135.6

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE---   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~---   78 (225)
                      .||+..+|++++|+++.+.+-.  ...      .-.....-++|+||||+|||+++++||+.+|..|++++-+.+.+   
T Consensus       408 iLdeDHYgm~dVKeRILEfiAV--~kL------rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAe  479 (906)
T KOG2004|consen  408 ILDEDHYGMEDVKERILEFIAV--GKL------RGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAE  479 (906)
T ss_pred             hhcccccchHHHHHHHHHHHHH--Hhh------cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHh
Confidence            4788999999999999996611  111      11122223449999999999999999999999999998876543   


Q ss_pred             -----cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          79 -----AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        79 -----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                           ..|+|.-..++++.+-+.      ...+.+++|||+|++...-++    +     --.+||++||.-...     
T Consensus       480 IkGHRRTYVGAMPGkiIq~LK~v------~t~NPliLiDEvDKlG~g~qG----D-----PasALLElLDPEQNa-----  539 (906)
T KOG2004|consen  480 IKGHRRTYVGAMPGKIIQCLKKV------KTENPLILIDEVDKLGSGHQG----D-----PASALLELLDPEQNA-----  539 (906)
T ss_pred             hcccceeeeccCChHHHHHHHhh------CCCCceEEeehhhhhCCCCCC----C-----hHHHHHHhcChhhcc-----
Confidence                 358888777777766433      247889999999999943221    1     347899999832211     


Q ss_pred             cccCCCCCCceeEEecCcceeeccCc-cccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccCCCCC
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGA-FSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGIIPVL  225 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~-~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~~~~~  225 (225)
                       ...++--  -+-++-|.++||||+| .+-||+++++|... |+.+-...++  ++...++-|..+.+.|+.|++
T Consensus       540 -nFlDHYL--dVp~DLSkVLFicTAN~idtIP~pLlDRMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~  610 (906)
T KOG2004|consen  540 -NFLDHYL--DVPVDLSKVLFICTANVIDTIPPPLLDRMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQ  610 (906)
T ss_pred             -chhhhcc--ccccchhheEEEEeccccccCChhhhhhhhe-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHh
Confidence             1111111  2456677777777764 68899999999744 4444444443  788899999999999998763

>CHL00206 ycf2 Ycf2; Provisional

Probab=99.83  E-value=9.4e-21  Score=178.28  Aligned_cols=136  Identities=21%  Similarity=0.279  Sum_probs=101.8

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc----------cCC------------------------
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY----------VGD------------------------   84 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~----------~g~------------------------   84 (225)
                      ++++|||+||||||||.||+++|..++.|++.++++++.+. |          .|+                        
T Consensus      1629 pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~-~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206       1629 PSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDN-KPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhc-ccccccccccccccccccccccccccccchhhhhhcch
Confidence            45699999999999999999999999999999999887642 2          110                        


Q ss_pred             -------cHH-HHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          85 -------DVE-SIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        85 -------~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                             .+. ..++.+|+.|    ++..||||||||||.+......        .-..+.|+..|++....        
T Consensus      1708 ~~~~m~~~e~~~rIr~lFelA----Rk~SPCIIFIDEIDaL~~~ds~--------~ltL~qLLneLDg~~~~-------- 1767 (2281)
T CHL00206       1708 LTMDMMPKIDRFYITLQFELA----KAMSPCIIWIPNIHDLNVNESN--------YLSLGLLVNSLSRDCER-------- 1767 (2281)
T ss_pred             hhhhhhhhhhHHHHHHHHHHH----HHCCCeEEEEEchhhcCCCccc--------eehHHHHHHHhcccccc--------
Confidence                   100 1245566665    5679999999999999976211        11367888888863211        


Q ss_pred             CCCCCCceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ....+  +++|+|||+       ++.||+|++|  |||+.|.++.|+..+
T Consensus      1768 ~s~~~--VIVIAATNR-------PD~LDPALLRPGRFDR~I~Ir~Pd~p~ 1808 (2281)
T CHL00206       1768 CSTRN--ILVIASTHI-------PQKVDPALIAPNKLNTCIKIRRLLIPQ 1808 (2281)
T ss_pred             CCCCC--EEEEEeCCC-------cccCCHhHcCCCCCCeEEEeCCCCchh
Confidence            01123  999999999       8899999999  999999988877643

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.83  E-value=2e-21  Score=146.36  Aligned_cols=132  Identities=45%  Similarity=0.635  Sum_probs=96.9

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCC----CeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINV----PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI  114 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  114 (225)
                      |..++||.||+|||||.+|+++|+.+..    +++.++++.+..    +.+....+........+.+...+.+|||||||
T Consensus         2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~----~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEi   77 (171)
T PF07724_consen    2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE----GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEI   77 (171)
T ss_dssp             -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS----HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETG
T ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc----cchHHhhhhhhhhcccceeeccchhhhhhHHH
Confidence            3457889999999999999999999985    899999988764    11112233444444445555666779999999


Q ss_pred             hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHH
Q psy5910         115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFII  188 (225)
Q Consensus       115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~  188 (225)
                      |++.++  ...+++.+++.+|+.|+++||+.....          ..  -..+.++|.+||+|+|+......-.
T Consensus        78 dKa~~~--~~~~~~v~~~~V~~~LL~~le~g~~~d----------~~--g~~vd~~n~ifI~Tsn~~~~~~~~~  137 (171)
T PF07724_consen   78 DKAHPS--NSGGADVSGEGVQNSLLQLLEGGTLTD----------SY--GRTVDTSNIIFIMTSNFGAEEIIDA  137 (171)
T ss_dssp             GGCSHT--TTTCSHHHHHHHHHHHHHHHHHSEEEE----------TT--CCEEEGTTEEEEEEESSSTHHHHHC
T ss_pred             hhcccc--ccccchhhHHHHHHHHHHHhcccceec----------cc--ceEEEeCCceEEEecccccchhhhh
Confidence            999986  223567778889999999999765431          11  3678999999999998866554443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>CHL00181 cbbX CbbX; Provisional

Probab=99.83  E-value=9.7e-21  Score=153.88  Aligned_cols=173  Identities=18%  Similarity=0.221  Sum_probs=112.0

Q ss_pred             CCcceeechhhHHhhheeeeEecc-cceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEecc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHY-KRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDA   73 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~   73 (225)
                      .|++.++|++++|+++.+.+.... ...+...+.....+..+++|+||||||||++|+++++.+       ..+++.++.
T Consensus        20 ~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~   99 (287)
T CHL00181         20 ILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR   99 (287)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH
Confidence            366788999999999887653211 111111111111223468999999999999999999876       235788887


Q ss_pred             CcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          74 TSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        74 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      .++.. .|.|.... ....+++.       ..++||||||++.+...+.    ....+.++++.|+++|+...       
T Consensus       100 ~~l~~-~~~g~~~~-~~~~~l~~-------a~ggVLfIDE~~~l~~~~~----~~~~~~e~~~~L~~~me~~~-------  159 (287)
T CHL00181        100 DDLVG-QYIGHTAP-KTKEVLKK-------AMGGVLFIDEAYYLYKPDN----ERDYGSEAIEILLQVMENQR-------  159 (287)
T ss_pred             HHHHH-HHhccchH-HHHHHHHH-------ccCCEEEEEccchhccCCC----ccchHHHHHHHHHHHHhcCC-------
Confidence            77653 47776532 23444443       3678999999999865321    12234668899999998532       


Q ss_pred             cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                            .+  +++|.+++.--+  ..+-.+++++++||+..|.|+.++.++
T Consensus       160 ------~~--~~vI~ag~~~~~--~~~~~~np~L~sR~~~~i~F~~~t~~e  200 (287)
T CHL00181        160 ------DD--LVVIFAGYKDRM--DKFYESNPGLSSRIANHVDFPDYTPEE  200 (287)
T ss_pred             ------CC--EEEEEeCCcHHH--HHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence                  11  556666543000  001123489999999999999999866

>KOG0741|consensus

Probab=99.82  E-value=1.8e-20  Score=157.70  Aligned_cols=143  Identities=27%  Similarity=0.419  Sum_probs=117.0

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCC-eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhh----CCCEEEEcch
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVP-IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELA----EQSIIYIDEI  114 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~vl~iDEi  114 (225)
                      -.++|||||||||||.+||.|.+.++.. --.+|+..+.+ +|+|++ +.+++.+|+.+....+..    .=.|++|||+
T Consensus       256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~-KYVGeS-E~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEi  333 (744)
T KOG0741|consen  256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILN-KYVGES-EENVRKLFADAEEEQRRLGANSGLHIIIFDEI  333 (744)
T ss_pred             eeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHH-Hhhccc-HHHHHHHHHhHHHHHHhhCccCCceEEEehhh
Confidence            4689999999999999999999999653 34467777664 799998 888999998885443322    2369999999


Q ss_pred             hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hcc
Q psy5910         115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RIN  192 (225)
Q Consensus       115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~  192 (225)
                      |+++.+|++..+...-.+.+.+.||.-||+...             -+++.+|.-||+       .+-||+|++|  ||.
T Consensus       334 DAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeq-------------LNNILVIGMTNR-------~DlIDEALLRPGRlE  393 (744)
T KOG0741|consen  334 DAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQ-------------LNNILVIGMTNR-------KDLIDEALLRPGRLE  393 (744)
T ss_pred             HHHHHhcCCCCCCCCccHHHHHHHHHhcccHHh-------------hhcEEEEeccCc-------hhhHHHHhcCCCceE
Confidence            999999988776666677799999999998532             122999999999       8899999999  999


Q ss_pred             cccccccccccc
Q psy5910         193 QETNFLEKLNNN  204 (225)
Q Consensus       193 ~~i~~~~~~~~~  204 (225)
                      .+++...|++..
T Consensus       394 VqmEIsLPDE~g  405 (744)
T KOG0741|consen  394 VQMEISLPDEKG  405 (744)
T ss_pred             EEEEEeCCCccC
Confidence            998888898866

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.82  E-value=2e-20  Score=168.59  Aligned_cols=174  Identities=22%  Similarity=0.279  Sum_probs=121.5

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE---   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~---   78 (225)
                      .|.++|+||+++++.|..++.....+....     ..|.+.+||+||||||||++|+++|+.++.+++.++++.+.+   
T Consensus       455 ~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~-----~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~  529 (758)
T PRK11034        455 RLKMLVFGQDKAIEALTEAIKMSRAGLGHE-----HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT  529 (758)
T ss_pred             HhcceEeCcHHHHHHHHHHHHHHhccccCC-----CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhccccc
Confidence            477899999999999999885443332111     134457899999999999999999999999999999877543   


Q ss_pred             --------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910          79 --------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT  150 (225)
Q Consensus        79 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  150 (225)
                              .+|.|......+...+       .....+|+||||+|++++.             +++.|+++||+..... 
T Consensus       530 ~~~LiG~~~gyvg~~~~g~L~~~v-------~~~p~sVlllDEieka~~~-------------v~~~LLq~ld~G~ltd-  588 (758)
T PRK11034        530 VSRLIGAPPGYVGFDQGGLLTDAV-------IKHPHAVLLLDEIEKAHPD-------------VFNLLLQVMDNGTLTD-  588 (758)
T ss_pred             HHHHcCCCCCcccccccchHHHHH-------HhCCCcEEEeccHhhhhHH-------------HHHHHHHHHhcCeeec-
Confidence                    2455543333333332       2345689999999999987             8999999999755432 


Q ss_pred             ccccccCCCCCCceeEEecCccee--ecc---C--c-----------cccHHHHHHhhcccccccccccccc
Q psy5910         151 SLAEKKNPSQNPQVFNIDTTNILF--IAG---G--A-----------FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       151 ~~~~~~~~~~~~~~~~i~ttn~~~--i~~---~--~-----------~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       ..++..+..+  .++|.|||.-.  +..   +  +           ...+.|.++.|+|..+.|++.+.+.
T Consensus       589 -~~g~~vd~rn--~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~  657 (758)
T PRK11034        589 -NNGRKADFRN--VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDV  657 (758)
T ss_pred             -CCCceecCCC--cEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHH
Confidence             2334444555  78888888531  000   0  0           0225577788888888888877765

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=99.82  E-value=1.4e-20  Score=152.89  Aligned_cols=173  Identities=18%  Similarity=0.238  Sum_probs=114.6

Q ss_pred             CCcceeechhhHHhhheeeeEecc-cceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-------CCeEEecc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHY-KRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-------VPIIVVDA   73 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-------~~~~~~~~   73 (225)
                      +|+..++|++++|+++.+.+.... ...+...+.....+..+++|+||||||||++|+++++.+.       .+++.+++
T Consensus        19 ~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~   98 (284)
T TIGR02880        19 QLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR   98 (284)
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH
Confidence            366778999999999988553321 1111111122222445899999999999999999988772       36888888


Q ss_pred             CcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          74 TSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        74 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      .++.. .|.|... .....+++.       ..+++|||||++.+.+.+.    ....+.++++.|++.|+...       
T Consensus        99 ~~l~~-~~~g~~~-~~~~~~~~~-------a~~gvL~iDEi~~L~~~~~----~~~~~~~~~~~Ll~~le~~~-------  158 (284)
T TIGR02880        99 DDLVG-QYIGHTA-PKTKEILKR-------AMGGVLFIDEAYYLYRPDN----ERDYGQEAIEILLQVMENQR-------  158 (284)
T ss_pred             HHHhH-hhcccch-HHHHHHHHH-------ccCcEEEEechhhhccCCC----ccchHHHHHHHHHHHHhcCC-------
Confidence            77754 5777663 334455544       3679999999999864321    12234568899999998532       


Q ss_pred             cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                            .+  +++|.+++..-  ...+-.+++++++||...|.||.++.+.
T Consensus       159 ------~~--~~vI~a~~~~~--~~~~~~~np~L~sR~~~~i~fp~l~~ed  199 (284)
T TIGR02880       159 ------DD--LVVILAGYKDR--MDSFFESNPGFSSRVAHHVDFPDYSEAE  199 (284)
T ss_pred             ------CC--EEEEEeCCcHH--HHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence                  12  66666654300  0001134789999999999999998765

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>TIGR00763 lon ATP-dependent protease La

Probab=99.82  E-value=2.8e-20  Score=169.66  Aligned_cols=187  Identities=21%  Similarity=0.233  Sum_probs=121.1

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE---   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~---   78 (225)
                      .|++.++||+++++.+.+.+.......        ..+...+||+||||||||++|+++|+.++.+++.++++...+   
T Consensus       317 ~l~~~~~G~~~~k~~i~~~~~~~~~~~--------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~  388 (775)
T TIGR00763       317 ILDEDHYGLKKVKERILEYLAVQKLRG--------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAE  388 (775)
T ss_pred             HhhhhcCChHHHHHHHHHHHHHHHhhc--------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHH
Confidence            367889999999999988553221110        122346889999999999999999999999999998754421   


Q ss_pred             -----cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc-Ccccc
Q psy5910          79 -----AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL-SITSL  152 (225)
Q Consensus        79 -----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~~~  152 (225)
                           ..|.|....... ..+..+     ...++|+||||+|++.+..+..         ..+.|+++||.... .+...
T Consensus       389 i~g~~~~~~g~~~g~i~-~~l~~~-----~~~~~villDEidk~~~~~~~~---------~~~aLl~~ld~~~~~~f~d~  453 (775)
T TIGR00763       389 IRGHRRTYVGAMPGRII-QGLKKA-----KTKNPLFLLDEIDKIGSSFRGD---------PASALLEVLDPEQNNAFSDH  453 (775)
T ss_pred             HcCCCCceeCCCCchHH-HHHHHh-----CcCCCEEEEechhhcCCccCCC---------HHHHHHHhcCHHhcCccccc
Confidence                 246666533333 333332     2345699999999998643211         45789999984211 11110


Q ss_pred             -ccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccC
Q psy5910         153 -AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGI  221 (225)
Q Consensus       153 -~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~  221 (225)
                       .....+..+  +++|+|+|.       .+.+++++++||. .|.|+.++.+.  +++..++.+..+...++
T Consensus       454 ~~~~~~d~s~--v~~I~TtN~-------~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l  515 (775)
T TIGR00763       454 YLDVPFDLSK--VIFIATANS-------IDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGL  515 (775)
T ss_pred             cCCceeccCC--EEEEEecCC-------chhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence             011111222  666677776       5689999999995 58888888655  55555565666555554

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>KOG0742|consensus

Probab=99.82  E-value=4.8e-20  Score=151.11  Aligned_cols=138  Identities=20%  Similarity=0.293  Sum_probs=107.6

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      .+-++||||||||||||++|+.||...|..+-.++++++...   |...-..+..+|..+.   ....+-+|||||+|.+
T Consensus       382 apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPl---G~qaVTkiH~lFDWak---kS~rGLllFIDEADAF  455 (630)
T KOG0742|consen  382 APFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPL---GAQAVTKIHKLFDWAK---KSRRGLLLFIDEADAF  455 (630)
T ss_pred             chhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcccc---chHHHHHHHHHHHHHh---hcccceEEEehhhHHH
Confidence            345799999999999999999999999999999999998753   4333445566666652   3457889999999999


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNF  197 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~  197 (225)
                      ...|..    ...++....+|..+|-...            .+...++++.+||.       +.++|.|+.+|||..++|
T Consensus       456 LceRnk----tymSEaqRsaLNAlLfRTG------------dqSrdivLvlAtNr-------pgdlDsAV~DRide~veF  512 (630)
T KOG0742|consen  456 LCERNK----TYMSEAQRSALNALLFRTG------------DQSRDIVLVLATNR-------PGDLDSAVNDRIDEVVEF  512 (630)
T ss_pred             HHHhch----hhhcHHHHHHHHHHHHHhc------------ccccceEEEeccCC-------ccchhHHHHhhhhheeec
Confidence            888743    3344556666666664221            12223899999999       999999999999999999


Q ss_pred             ccccccc
Q psy5910         198 LEKLNNN  204 (225)
Q Consensus       198 ~~~~~~~  204 (225)
                      |.|.+|+
T Consensus       513 pLPGeEE  519 (630)
T KOG0742|consen  513 PLPGEEE  519 (630)
T ss_pred             CCCChHH
Confidence            9999987

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=99.81  E-value=4.2e-20  Score=148.84  Aligned_cols=168  Identities=15%  Similarity=0.181  Sum_probs=107.7

Q ss_pred             eeechhhHHhhheeeeEecccc-eEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccCccc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKR-LFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDATSFT   77 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~~~~   77 (225)
                      .++|++++|++|.+.+.+.... .+...+........+++|+||||||||++|+++|+.+       ..+++.+++.++.
T Consensus         7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~   86 (261)
T TIGR02881         7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV   86 (261)
T ss_pred             HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence            3799999999998755332111 1111122222334689999999999999999999875       2357777777765


Q ss_pred             ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910          78 EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN  157 (225)
Q Consensus        78 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~  157 (225)
                      . .|.|+. ......+++.+       .++||||||++.+....     ......+.++.|++.|+....          
T Consensus        87 ~-~~~g~~-~~~~~~~~~~a-------~~~VL~IDE~~~L~~~~-----~~~~~~~~i~~Ll~~~e~~~~----------  142 (261)
T TIGR02881        87 G-EYIGHT-AQKTREVIKKA-------LGGVLFIDEAYSLARGG-----EKDFGKEAIDTLVKGMEDNRN----------  142 (261)
T ss_pred             h-hhccch-HHHHHHHHHhc-------cCCEEEEechhhhccCC-----ccchHHHHHHHHHHHHhccCC----------
Confidence            4 577765 34445555543       57899999999997421     112234577888888885321          


Q ss_pred             CCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                         .  +++|.++..--  ...+..+++++++||...+.|+.++.++
T Consensus       143 ---~--~~vila~~~~~--~~~~~~~~p~L~sRf~~~i~f~~~~~~e  182 (261)
T TIGR02881       143 ---E--FVLILAGYSDE--MDYFLSLNPGLRSRFPISIDFPDYTVEE  182 (261)
T ss_pred             ---C--EEEEecCCcch--hHHHHhcChHHHhccceEEEECCCCHHH
Confidence               1  44444432200  0012246789999998889999888765

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=99.80  E-value=4.5e-20  Score=144.87  Aligned_cols=152  Identities=24%  Similarity=0.347  Sum_probs=111.6

Q ss_pred             eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcH
Q psy5910           7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDV   86 (225)
Q Consensus         7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~   86 (225)
                      .+||+++|++|.-.+.....+...+         .|+||+||||.||||||..||+++|..+...++..+..+    .+.
T Consensus        28 fiGQ~~vk~~L~ifI~AAk~r~e~l---------DHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~----gDl   94 (332)
T COG2255          28 FIGQEKVKEQLQIFIKAAKKRGEAL---------DHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP----GDL   94 (332)
T ss_pred             hcChHHHHHHHHHHHHHHHhcCCCc---------CeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh----hhH
Confidence            4999999999988776555544333         499999999999999999999999999988888777532    122


Q ss_pred             HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCc-----cccccccCCCCC
Q psy5910          87 ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI-----TSLAEKKNPSQN  161 (225)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~-----~~~~~~~~~~~~  161 (225)
                      ...++.+          ..+-|+|||||+++.+.             +...|+.+||.+...+     +.......+-..
T Consensus        95 aaiLt~L----------e~~DVLFIDEIHrl~~~-------------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp  151 (332)
T COG2255          95 AAILTNL----------EEGDVLFIDEIHRLSPA-------------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP  151 (332)
T ss_pred             HHHHhcC----------CcCCeEEEehhhhcChh-------------HHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence            3333322          46789999999999988             7889999999765543     222222222233


Q ss_pred             CceeEEecCcceeeccCccccHHHHHHhhcccc--ccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLEKLNN  203 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~~~~~  203 (225)
                        |-+|++|-+       .-.+...+++||...  ++|-.+.+-
T Consensus       152 --FTLIGATTr-------~G~lt~PLrdRFGi~~rlefY~~~eL  186 (332)
T COG2255         152 --FTLIGATTR-------AGMLTNPLRDRFGIIQRLEFYTVEEL  186 (332)
T ss_pred             --eeEeeeccc-------cccccchhHHhcCCeeeeecCCHHHH
Confidence              777777766       567889999999887  666655543

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.80  E-value=1.8e-19  Score=163.60  Aligned_cols=174  Identities=23%  Similarity=0.301  Sum_probs=123.5

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE---   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~---   78 (225)
                      .|.++|+||+++++.+..++.....+....     ..|...+||+||||||||++|+++|+.++.+++.++++.+.+   
T Consensus       451 ~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~-----~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~  525 (731)
T TIGR02639       451 NLKAKIFGQDEAIDSLVSSIKRSRAGLGNP-----NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHT  525 (731)
T ss_pred             HHhcceeCcHHHHHHHHHHHHHHhcCCCCC-----CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhccc
Confidence            468899999999999988774332221111     123345789999999999999999999999999999876532   


Q ss_pred             --------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910          79 --------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT  150 (225)
Q Consensus        79 --------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  150 (225)
                              .+|.|.+....+...+       +....+|++|||+|++.+.             +++.|+++||+...+  
T Consensus       526 ~~~lig~~~gyvg~~~~~~l~~~~-------~~~p~~VvllDEieka~~~-------------~~~~Ll~~ld~g~~~--  583 (731)
T TIGR02639       526 VSRLIGAPPGYVGFEQGGLLTEAV-------RKHPHCVLLLDEIEKAHPD-------------IYNILLQVMDYATLT--  583 (731)
T ss_pred             HHHHhcCCCCCcccchhhHHHHHH-------HhCCCeEEEEechhhcCHH-------------HHHHHHHhhccCeee--
Confidence                    4566665444444333       2346789999999999987             899999999975543  


Q ss_pred             ccccccCCCCCCceeEEecCccee--ecc------C-c---------cccHHHHHHhhcccccccccccccc
Q psy5910         151 SLAEKKNPSQNPQVFNIDTTNILF--IAG------G-A---------FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       151 ~~~~~~~~~~~~~~~~i~ttn~~~--i~~------~-~---------~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ...++..+..+  .++|+|||...  +..      . .         ...+.|.++.||+..+.|.+-+.+.
T Consensus       584 d~~g~~vd~~~--~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~  653 (731)
T TIGR02639       584 DNNGRKADFRN--VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEV  653 (731)
T ss_pred             cCCCcccCCCC--CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHH
Confidence            33455555566  88899998742  110      0 0         0125677888999888888888766

>COG0714 MoxR-like ATPases [General function prediction only]

Probab=99.79  E-value=1.9e-19  Score=149.58  Aligned_cols=169  Identities=21%  Similarity=0.355  Sum_probs=116.3

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc-cccC
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF-TEAG   80 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~-~~~~   80 (225)
                      .+...++|+++++..+..++                ...+++||.||||||||++|+++|+.++.+++.+.|... ....
T Consensus        21 ~~~~~~~g~~~~~~~~l~a~----------------~~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d   84 (329)
T COG0714          21 ELEKVVVGDEEVIELALLAL----------------LAGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSD   84 (329)
T ss_pred             hcCCeeeccHHHHHHHHHHH----------------HcCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHH
Confidence            35667889999998888877                666899999999999999999999999999999999643 2222


Q ss_pred             ccCCcHHHHH---HHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910          81 YVGDDVESII---QKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN  157 (225)
Q Consensus        81 ~~g~~~~~~~---~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~  157 (225)
                      ..|.......   ...+....+.+-....+++|+|||++..+.             +|+.|+.+|++....++.... ..
T Consensus        85 ~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~-------------~q~aLl~~l~e~~vtv~~~~~-~~  150 (329)
T COG0714          85 LLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPE-------------VQNALLEALEERQVTVPGLTT-IR  150 (329)
T ss_pred             hcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHH-------------HHHHHHHHHhCcEEEECCcCC-cC
Confidence            3333211111   111111111111111259999999999988             899999999987766655442 21


Q ss_pred             CCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--cccccccccc
Q psy5910         158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLEKLNNN  204 (225)
Q Consensus       158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~~~~~~  204 (225)
                      ....  +++++|+|.+.....  ..+++|+++||...  ++||.+..+.
T Consensus       151 ~~~~--f~viaT~Np~e~~g~--~~l~eA~ldRf~~~~~v~yp~~~~e~  195 (329)
T COG0714         151 LPPP--FIVIATQNPGEYEGT--YPLPEALLDRFLLRIYVDYPDSEEEE  195 (329)
T ss_pred             CCCC--CEEEEccCccccCCC--cCCCHHHHhhEEEEEecCCCCchHHH
Confidence            2223  899999996443332  37899999999555  7777555443

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=99.78  E-value=5.6e-19  Score=160.22  Aligned_cols=187  Identities=17%  Similarity=0.228  Sum_probs=125.5

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc---
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE---   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~---   78 (225)
                      .|++.++|++++|+.+.+.+.......        ..+...++|+||||||||++++.+|+.++.+++.++.+...+   
T Consensus       319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~--------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~  390 (784)
T PRK10787        319 ILDTDHYGLERVKDRILEYLAVQSRVN--------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAE  390 (784)
T ss_pred             HhhhhccCHHHHHHHHHHHHHHHHhcc--------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHH
Confidence            478889999999999987663222110        022346779999999999999999999999999988765432   


Q ss_pred             -----cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc-Ccccc
Q psy5910          79 -----AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL-SITSL  152 (225)
Q Consensus        79 -----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~-~~~~~  152 (225)
                           ..|.|.........+ ..+     ...++|++|||+|++.......         .+++|+++||.... .+...
T Consensus       391 i~g~~~~~~g~~~G~~~~~l-~~~-----~~~~~villDEidk~~~~~~g~---------~~~aLlevld~~~~~~~~d~  455 (784)
T PRK10787        391 IRGHRRTYIGSMPGKLIQKM-AKV-----GVKNPLFLLDEIDKMSSDMRGD---------PASALLEVLDPEQNVAFSDH  455 (784)
T ss_pred             hccchhccCCCCCcHHHHHH-Hhc-----CCCCCEEEEEChhhcccccCCC---------HHHHHHHHhccccEEEEecc
Confidence                 135555433333322 221     1356799999999998763211         57899999984221 11100


Q ss_pred             ccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccC
Q psy5910         153 AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGI  221 (225)
Q Consensus       153 ~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~  221 (225)
                      .       -  -+.+..++++||||+|...|++++++||. .|.|..++.++  ++...++.++.+.+.|+
T Consensus       456 ~-------~--~~~~dls~v~~i~TaN~~~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l  516 (784)
T PRK10787        456 Y-------L--EVDYDLSDVMFVATSNSMNIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNAL  516 (784)
T ss_pred             c-------c--cccccCCceEEEEcCCCCCCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCC
Confidence            0       0  12345677777777766689999999995 46777777665  77777787777766554

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=99.76  E-value=4.2e-19  Score=144.64  Aligned_cols=156  Identities=19%  Similarity=0.246  Sum_probs=107.8

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc-cCccCCcHHHH--HH--HHHHhcchhhhhhCCCEEEEcch
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-AGYVGDDVESI--IQ--KLLHECDYDVELAEQSIIYIDEI  114 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-~~~~g~~~~~~--~~--~~~~~~~~~~~~~~~~vl~iDEi  114 (225)
                      .+++||.||||||||++++.+|+.++.+++.+++..... ..+.|......  -.  ..|.......+...+.++++||+
T Consensus        64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi  143 (327)
T TIGR01650        64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY  143 (327)
T ss_pred             CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence            468999999999999999999999999999999865533 22455431100  00  01111111122357788999999


Q ss_pred             hhhcccccccCCCCCChHHHHHHHHHHHh-cCCcCccccccccCCCCCCceeEEecCcceeecc--C---ccccHHHHHH
Q psy5910         115 DKISKKTDVVSGKDVSGEGVQQSLLKLIE-GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG--G---AFSGIENFII  188 (225)
Q Consensus       115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~--~---~~~~l~~al~  188 (225)
                      |.+.++             ++..|..+|| +....++.......++..  |++|+|.|.+=..+  +   -...+++|++
T Consensus       144 n~a~p~-------------~~~~L~~lLE~~~~l~i~~~~~~i~~hp~--FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~l  208 (327)
T TIGR01650       144 DAGRPD-------------VMFVIQRVLEAGGKLTLLDQNRVIRAHPA--FRLFATANTIGLGDTTGLYHGTQQINQAQM  208 (327)
T ss_pred             hccCHH-------------HHHHHHHHhccCCeEEECCCceEecCCCC--eEEEEeeCCCCcCCCCcceeeeecCCHHHH
Confidence            999887             8999999998 445555555555556666  99999999842111  0   0236899999


Q ss_pred             hhcccc--ccccccccccchhccc
Q psy5910         189 NRINQE--TNFLEKLNNNYNLICE  210 (225)
Q Consensus       189 ~Rf~~~--i~~~~~~~~~~~l~~~  210 (225)
                      +||...  ++|+.++.|.+++.+.
T Consensus       209 DRF~i~~~~~Yp~~e~E~~Il~~~  232 (327)
T TIGR01650       209 DRWSIVTTLNYLEHDNEAAIVLAK  232 (327)
T ss_pred             hheeeEeeCCCCCHHHHHHHHHhh
Confidence            999754  8888888886555543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.76  E-value=1.7e-18  Score=141.98  Aligned_cols=105  Identities=24%  Similarity=0.400  Sum_probs=80.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  120 (225)
                      .+++|||||||||||+|+.||...+.+|..+++....         .+-++.+++++.......+..|||+|||+++...
T Consensus        49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~g---------vkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~  119 (436)
T COG2256          49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSG---------VKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA  119 (436)
T ss_pred             ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccccc---------HHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh
Confidence            5889999999999999999999999999999885532         2335566665533323346799999999999977


Q ss_pred             ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecC--cceeeccCccccHHHHHHhhc
Q psy5910         121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTT--NILFIAGGAFSGIENFIINRI  191 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf  191 (225)
                                   .|..|+..+|...                 +++|++|  |.       +-.+.+|+++|.
T Consensus       120 -------------QQD~lLp~vE~G~-----------------iilIGATTENP-------sF~ln~ALlSR~  155 (436)
T COG2256         120 -------------QQDALLPHVENGT-----------------IILIGATTENP-------SFELNPALLSRA  155 (436)
T ss_pred             -------------hhhhhhhhhcCCe-----------------EEEEeccCCCC-------CeeecHHHhhhh
Confidence                         7999999999754                 5555544  44       237999999985

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=99.74  E-value=1.2e-17  Score=134.51  Aligned_cols=155  Identities=17%  Similarity=0.263  Sum_probs=98.5

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc-cC----ccCCcHHHHHHHHHH--------------hcch
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-AG----YVGDDVESIIQKLLH--------------ECDY   99 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-~~----~~g~~~~~~~~~~~~--------------~~~~   99 (225)
                      ...++||+||||||||++|+++|+.++.+++.+++..-.. ..    |.+............              ....
T Consensus        20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l   99 (262)
T TIGR02640        20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRL   99 (262)
T ss_pred             cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchH
Confidence            3468999999999999999999999999999998854211 11    221111111111100              0001


Q ss_pred             hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc---cCCCCCCceeEEecCcceeec
Q psy5910         100 DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK---KNPSQNPQVFNIDTTNILFIA  176 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~---~~~~~~~~~~~i~ttn~~~i~  176 (225)
                      ..+...+++++|||++++.+.             +++.|+.+|++....++.....   ...+.+  +.+|+|+|..--.
T Consensus       100 ~~A~~~g~~lllDEi~r~~~~-------------~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~--frvIaTsN~~~~~  164 (262)
T TIGR02640       100 TLAVREGFTLVYDEFTRSKPE-------------TNNVLLSVFEEGVLELPGKRGTSRYVDVHPE--FRVIFTSNPVEYA  164 (262)
T ss_pred             HHHHHcCCEEEEcchhhCCHH-------------HHHHHHHHhcCCeEEccCCCCCCceEecCCC--CEEEEeeCCcccc
Confidence            112347789999999999877             8999999999766555442211   112233  8899999973111


Q ss_pred             cCccccHHHHHHhhcccc-ccccccccccchhccc
Q psy5910         177 GGAFSGIENFIINRINQE-TNFLEKLNNNYNLICE  210 (225)
Q Consensus       177 ~~~~~~l~~al~~Rf~~~-i~~~~~~~~~~~l~~~  210 (225)
                       + ...+++++++||... +.||.++.+.+++.++
T Consensus       165 -g-~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~  197 (262)
T TIGR02640       165 -G-VHETQDALLDRLITIFMDYPDIDTETAILRAK  197 (262)
T ss_pred             -c-eecccHHHHhhcEEEECCCCCHHHHHHHHHHh
Confidence             1 125699999998554 7776665554555544

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>KOG0743|consensus

Probab=99.74  E-value=1.6e-18  Score=144.20  Aligned_cols=166  Identities=19%  Similarity=0.212  Sum_probs=121.9

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .++-..+.|+.|.+.+..+.++..-++..+.++ +++.|||||||||||++..|+|++++..++.++.+....      +
T Consensus       202 TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkaw-KRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~------n  274 (457)
T KOG0743|consen  202 TLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAW-KRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL------D  274 (457)
T ss_pred             ccccChhHHHHHHHHHHHHHhcchHHHhcCcch-hccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC------c
Confidence            345567788888888877777777777777644 569999999999999999999999999999998876643      2


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCC--C---CChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGK--D---VSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ  160 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~--~---~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~  160 (225)
                       .. ++.++...      ...+||+|.+||....-++.....  .   ....-+...||.++|+.-....         +
T Consensus       275 -~d-Lr~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg---------~  337 (457)
T KOG0743|consen  275 -SD-LRHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCG---------D  337 (457)
T ss_pred             -HH-HHHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCC---------C
Confidence             22 55555443      578999999999886543322210  0   1122367789999998643311         1


Q ss_pred             CCceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         161 NPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       161 ~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      .  -++|.|||.       .+.||||++|  |.|.+|.+.-...++
T Consensus       338 E--RIivFTTNh-------~EkLDPALlRpGRmDmhI~mgyCtf~~  374 (457)
T KOG0743|consen  338 E--RIIVFTTNH-------KEKLDPALLRPGRMDMHIYMGYCTFEA  374 (457)
T ss_pred             c--eEEEEecCC-------hhhcCHhhcCCCcceeEEEcCCCCHHH
Confidence            1  578888888       8999999999  999998877776665

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.72  E-value=1.1e-17  Score=153.64  Aligned_cols=142  Identities=26%  Similarity=0.373  Sum_probs=96.7

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccc-
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFT-   77 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~-   77 (225)
                      .|.+.|+||+++++.+..++.....+....     ..|...+||+||||||||++|+++|+.+   ..+++.++++.+. 
T Consensus       506 ~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~-----~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~  580 (821)
T CHL00095        506 TLHKRIIGQDEAVVAVSKAIRRARVGLKNP-----NRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYME  580 (821)
T ss_pred             HhcCcCcChHHHHHHHHHHHHHHhhcccCC-----CCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccc
Confidence            478999999999999998885443322111     1233457899999999999999999988   3568888876552 


Q ss_pred             ----------ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          78 ----------EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        78 ----------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                                .++|.|.+....+....       +....+|++|||+|++.+.             +++.|+++||.+..
T Consensus       581 ~~~~~~l~g~~~gyvg~~~~~~l~~~~-------~~~p~~VvllDeieka~~~-------------v~~~Llq~le~g~~  640 (821)
T CHL00095        581 KHTVSKLIGSPPGYVGYNEGGQLTEAV-------RKKPYTVVLFDEIEKAHPD-------------IFNLLLQILDDGRL  640 (821)
T ss_pred             cccHHHhcCCCCcccCcCccchHHHHH-------HhCCCeEEEECChhhCCHH-------------HHHHHHHHhccCce
Confidence                      23566654333333332       2345689999999999988             89999999997554


Q ss_pred             CccccccccCCCCCCceeEEecCcc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      +..  .++..+..+  .++|.|||.
T Consensus       641 ~d~--~g~~v~~~~--~i~I~Tsn~  661 (821)
T CHL00095        641 TDS--KGRTIDFKN--TLIIMTSNL  661 (821)
T ss_pred             ecC--CCcEEecCc--eEEEEeCCc
Confidence            422  222223333  555555555

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.72  E-value=2.7e-17  Score=136.77  Aligned_cols=157  Identities=22%  Similarity=0.285  Sum_probs=101.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.++||++.++.+...+......         ..+.++++|+||||||||++|+++|+.++..+...++..+..      
T Consensus        25 ~~~vG~~~~~~~l~~~l~~~~~~---------~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------   89 (328)
T PRK00080         25 DEFIGQEKVKENLKIFIEAAKKR---------GEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------   89 (328)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhc---------CCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------
Confidence            34699999999987766322111         123458999999999999999999999998877766554321      


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCc--ccccc-ccCCCCC
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI--TSLAE-KKNPSQN  161 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~--~~~~~-~~~~~~~  161 (225)
                        ...+..++..      ...+.++||||++.+...             .++.|...|+.....+  ..... ......-
T Consensus        90 --~~~l~~~l~~------l~~~~vl~IDEi~~l~~~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l  148 (328)
T PRK00080         90 --PGDLAAILTN------LEEGDVLFIDEIHRLSPV-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDL  148 (328)
T ss_pred             --hHHHHHHHHh------cccCCEEEEecHhhcchH-------------HHHHHHHHHHhcceeeeeccCccccceeecC
Confidence              1112223222      146789999999999865             5667778887543211  00000 0000011


Q ss_pred             CceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +.+++|++||.       ...+++++++||...+.++.++.+.
T Consensus       149 ~~~~li~at~~-------~~~l~~~L~sRf~~~~~l~~~~~~e  184 (328)
T PRK00080        149 PPFTLIGATTR-------AGLLTSPLRDRFGIVQRLEFYTVEE  184 (328)
T ss_pred             CCceEEeecCC-------cccCCHHHHHhcCeeeecCCCCHHH
Confidence            22666777766       5578899999998777777777654

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=99.71  E-value=1.3e-17  Score=125.34  Aligned_cols=145  Identities=22%  Similarity=0.355  Sum_probs=94.4

Q ss_pred             eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccC
Q psy5910           7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g   83 (225)
                      |+|.+.+++.+.+.+...            .....+|||+|++||||+.+|++|++..   +.||+.++|..+..     
T Consensus         1 liG~s~~m~~~~~~~~~~------------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~-----   63 (168)
T PF00158_consen    1 LIGESPAMKRLREQAKRA------------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE-----   63 (168)
T ss_dssp             SS--SHHHHHHHHHHHHH------------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H-----
T ss_pred             CEeCCHHHHHHHHHHHHH------------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc-----
Confidence            467777777776655211            1334699999999999999999999977   47899999988743     


Q ss_pred             CcHHHHHHHHHHhc-----------chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccc
Q psy5910          84 DDVESIIQKLLHEC-----------DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSL  152 (225)
Q Consensus        84 ~~~~~~~~~~~~~~-----------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~  152 (225)
                         +..-..+|-..           .+.+..+.+++||||||+.+.+.             +|..|+++|+.......  
T Consensus        64 ---~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~--  125 (168)
T PF00158_consen   64 ---ELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRL--  125 (168)
T ss_dssp             ---HHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECC--
T ss_pred             ---chhhhhhhccccccccccccccCCceeeccceEEeecchhhhHHH-------------HHHHHHHHHhhchhccc--
Confidence               22223344221           24566779999999999999988             89999999986432211  


Q ss_pred             ccccCCCCCCceeEEecCcceeeccCccccHHHHHHh-hccccccc
Q psy5910         153 AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-RINQETNF  197 (225)
Q Consensus       153 ~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~~i~~  197 (225)
                      +......  .++.+|++|+.         ++.+.+.. +|...+.|
T Consensus       126 g~~~~~~--~~~RiI~st~~---------~l~~~v~~g~fr~dLy~  160 (168)
T PF00158_consen  126 GSDKPVP--VDVRIIASTSK---------DLEELVEQGRFREDLYY  160 (168)
T ss_dssp             TSSSEEE----EEEEEEESS----------HHHHHHTTSS-HHHHH
T ss_pred             ccccccc--ccceEEeecCc---------CHHHHHHcCCChHHHHH
Confidence            1111011  12888888887         88888887 67554443

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=99.71  E-value=2.9e-17  Score=149.26  Aligned_cols=156  Identities=23%  Similarity=0.251  Sum_probs=109.5

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .++|+++.++.+.+.+..              ....+++|+||||||||++++.+|+.+          +..++.++++.
T Consensus       183 ~~igr~~ei~~~~~~L~~--------------~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~  248 (731)
T TIGR02639       183 PLIGREDELERTIQVLCR--------------RKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS  248 (731)
T ss_pred             cccCcHHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence            568999999888765511              234589999999999999999999987          67788888776


Q ss_pred             ccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          76 FTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                      +.. .+|.|+- +..++.+++.+    ....++||||||++.+........    ....+++.|...|+...        
T Consensus       249 l~a~~~~~g~~-e~~l~~i~~~~----~~~~~~ILfiDEih~l~~~g~~~~----~~~~~~~~L~~~l~~g~--------  311 (731)
T TIGR02639       249 LLAGTKYRGDF-EERLKAVVSEI----EKEPNAILFIDEIHTIVGAGATSG----GSMDASNLLKPALSSGK--------  311 (731)
T ss_pred             HhhhccccchH-HHHHHHHHHHH----hccCCeEEEEecHHHHhccCCCCC----ccHHHHHHHHHHHhCCC--------
Confidence            643 3466643 66677777664    234588999999999986642111    11236677777776432        


Q ss_pred             ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                               +.+|++|+..=  ...+-..|+++.|||. .|.++.|+.++
T Consensus       312 ---------i~~IgaTt~~e--~~~~~~~d~al~rRf~-~i~v~~p~~~~  349 (731)
T TIGR02639       312 ---------LRCIGSTTYEE--YKNHFEKDRALSRRFQ-KIDVGEPSIEE  349 (731)
T ss_pred             ---------eEEEEecCHHH--HHHHhhhhHHHHHhCc-eEEeCCCCHHH
Confidence                     77788877500  0001257999999997 57888887765

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.71  E-value=3.2e-17  Score=135.03  Aligned_cols=154  Identities=20%  Similarity=0.284  Sum_probs=100.2

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .++||+++++.|...+.......         .+..+++|+||||||||++|+++|+.++.++....+......      
T Consensus         5 ~~iG~~~~~~~l~~~l~~~~~~~---------~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~------   69 (305)
T TIGR00635         5 EFIGQEKVKEQLQLFIEAAKMRQ---------EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP------   69 (305)
T ss_pred             HHcCHHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc------
Confidence            46999999999888763222111         223579999999999999999999999888766655433210      


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc-----ccCCCC
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE-----KKNPSQ  160 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~-----~~~~~~  160 (225)
                       .. +...+..      ...+.++||||++.+.+.             .+..|+.+|+.....+--..+     ...+. 
T Consensus        70 -~~-l~~~l~~------~~~~~vl~iDEi~~l~~~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~-  127 (305)
T TIGR00635        70 -GD-LAAILTN------LEEGDVLFIDEIHRLSPA-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDL-  127 (305)
T ss_pred             -hh-HHHHHHh------cccCCEEEEehHhhhCHH-------------HHHHhhHHHhhhheeeeeccCccccceeecC-
Confidence             11 1122211      135789999999999866             567788888764422100000     00111 


Q ss_pred             CCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         161 NPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       161 ~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       +.+.++.+||.       ...+++++++||...+.+..++.+.
T Consensus       128 -~~~~li~~t~~-------~~~l~~~l~sR~~~~~~l~~l~~~e  163 (305)
T TIGR00635       128 -PPFTLVGATTR-------AGMLTSPLRDRFGIILRLEFYTVEE  163 (305)
T ss_pred             -CCeEEEEecCC-------ccccCHHHHhhcceEEEeCCCCHHH
Confidence             12566666666       4578999999997777777777654

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.71  E-value=1.8e-17  Score=151.91  Aligned_cols=143  Identities=22%  Similarity=0.322  Sum_probs=102.1

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~   78 (225)
                      .|.+.|+||+++++.+.+++.....+....     ..|.+.+||+||||||||.+|+++|+.+   ...++.++++.+.+
T Consensus       563 ~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~-----~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~  637 (852)
T TIGR03345       563 RLAERVIGQDHALEAIAERIRTARAGLEDP-----RKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQE  637 (852)
T ss_pred             HhcCeEcChHHHHHHHHHHHHHHhcCCCCC-----CCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhh
Confidence            478899999999999999885443322111     1233457899999999999999999998   44688888766532


Q ss_pred             -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                                 .+|.|......+...+       +....+||+|||++++.+.             +++.|+++|+.+..
T Consensus       638 ~~~~~~l~g~~~gyvg~~~~g~L~~~v-------~~~p~svvllDEieka~~~-------------v~~~Llq~ld~g~l  697 (852)
T TIGR03345       638 AHTVSRLKGSPPGYVGYGEGGVLTEAV-------RRKPYSVVLLDEVEKAHPD-------------VLELFYQVFDKGVM  697 (852)
T ss_pred             hhhhccccCCCCCcccccccchHHHHH-------HhCCCcEEEEechhhcCHH-------------HHHHHHHHhhccee
Confidence                       3577765333343333       3357799999999999987             89999999997654


Q ss_pred             CccccccccCCCCCCceeEEecCcce
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNIL  173 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~~  173 (225)
                      .  ...++..+..+  .++|.|||..
T Consensus       698 ~--d~~Gr~vd~~n--~iiI~TSNlg  719 (852)
T TIGR03345       698 E--DGEGREIDFKN--TVILLTSNAG  719 (852)
T ss_pred             e--cCCCcEEeccc--cEEEEeCCCc
Confidence            3  33344445555  7788888874

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=99.69  E-value=2.1e-18  Score=126.10  Aligned_cols=133  Identities=26%  Similarity=0.377  Sum_probs=80.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc-CccCC-cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA-GYVGD-DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK  119 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-~~~g~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~  119 (225)
                      +|||+||||||||++|+.+|+.++.++..+++....+. .+.|. ... .....+......-....+.+++|||++++.+
T Consensus         1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~-~~~~~~~~~~l~~a~~~~~il~lDEin~a~~   79 (139)
T PF07728_consen    1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPS-NGQFEFKDGPLVRAMRKGGILVLDEINRAPP   79 (139)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET--TTTTCEEE-CCCTTHHEEEEEEESSCGG--H
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeec-ccccccccccccccccceeEEEECCcccCCH
Confidence            58999999999999999999999999999988654321 11111 000 0000000000111123789999999999996


Q ss_pred             cccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC----CCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910         120 KTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ----NPQVFNIDTTNILFIAGGAFSGIENFIINRI  191 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~----~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf  191 (225)
                      .             +++.|+.+|+......+..........    .+++.+|+|+|..-   .....++++++|||
T Consensus        80 ~-------------v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~---~~~~~l~~al~~Rf  139 (139)
T PF07728_consen   80 E-------------VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD---KGRKELSPALLDRF  139 (139)
T ss_dssp             H-------------HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST-----TTTTCHHHHTT-
T ss_pred             H-------------HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC---CCcCcCCHHHHhhC
Confidence            6             899999999976655443332221111    11388888888822   11238999999998

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=99.69  E-value=1.6e-17  Score=126.89  Aligned_cols=167  Identities=17%  Similarity=0.291  Sum_probs=83.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC----eEEeccCc-c---
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----IIVVDATS-F---   76 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----~~~~~~~~-~---   76 (225)
                      ..|+||+.+|+.|.-+.                ....++||+||||||||++|+.+...+..-    ...+.... +   
T Consensus         3 ~dI~GQe~aKrAL~iAA----------------aG~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~   66 (206)
T PF01078_consen    3 SDIVGQEEAKRALEIAA----------------AGGHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL   66 (206)
T ss_dssp             CCSSSTHHHHHHHHHHH----------------HCC--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred             hhhcCcHHHHHHHHHHH----------------cCCCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence            46899999999998877                445699999999999999999999887321    11110000 0   


Q ss_pred             -------cccCcc----CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          77 -------TEAGYV----GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        77 -------~~~~~~----g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                             ....|.    ..+....+.....-..+.+..+.++|||+||+..+.+.             +.+.|++.|+..
T Consensus        67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~-------------vld~Lr~ple~g  133 (206)
T PF01078_consen   67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRS-------------VLDALRQPLEDG  133 (206)
T ss_dssp             S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HH-------------HHHHHHHHHHHS
T ss_pred             CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHH-------------HHHHHHHHHHCC
Confidence                   000010    01111111111111235677889999999999998877             899999999987


Q ss_pred             CcCccccccccCCCCCCceeEEecCcce---------eeccCcc-------ccHHHHHHhhcccccccccccc
Q psy5910         146 NLSITSLAEKKNPSQNPQVFNIDTTNIL---------FIAGGAF-------SGIENFIINRINQETNFLEKLN  202 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~---------~i~~~~~-------~~l~~al~~Rf~~~i~~~~~~~  202 (225)
                      ...+...+.......+  +.+|+|+|.=         -.|+++.       ..+..++++|||..+..+..+.
T Consensus       134 ~v~i~R~~~~~~~Pa~--f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~  204 (206)
T PF01078_consen  134 EVTISRAGGSVTYPAR--FLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSY  204 (206)
T ss_dssp             BEEEEETTEEEEEB----EEEEEEE-S----------------------------------------------
T ss_pred             eEEEEECCceEEEecc--cEEEEEecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            7766665543322233  8999998862         1233322       5588889999998877766554

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.69  E-value=5.4e-17  Score=149.54  Aligned_cols=174  Identities=24%  Similarity=0.326  Sum_probs=116.0

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~   78 (225)
                      .|.+.|+||+.+++.+..++.....+....     ..|...+||+||||||||++|+++|+.+   +.+++.++++.+.+
T Consensus       562 ~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~-----~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~  636 (852)
T TIGR03346       562 VLHERVVGQDEAVEAVSDAIRRSRAGLSDP-----NRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYME  636 (852)
T ss_pred             HhhcccCCChHHHHHHHHHHHHHhccCCCC-----CCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcc
Confidence            367889999999999999885433221111     1233468899999999999999999987   46788888865532


Q ss_pred             -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                                 ++|.|......+....       .....+||+|||++++.+.             +++.|+++|+....
T Consensus       637 ~~~~~~l~g~~~g~~g~~~~g~l~~~v-------~~~p~~vlllDeieka~~~-------------v~~~Ll~~l~~g~l  696 (852)
T TIGR03346       637 KHSVARLIGAPPGYVGYEEGGQLTEAV-------RRKPYSVVLFDEVEKAHPD-------------VFNVLLQVLDDGRL  696 (852)
T ss_pred             cchHHHhcCCCCCccCcccccHHHHHH-------HcCCCcEEEEeccccCCHH-------------HHHHHHHHHhcCce
Confidence                       2455543222333322       2235679999999999988             89999999987654


Q ss_pred             CccccccccCCCCCCceeEEecCcceee--cc---C-c------------cccHHHHHHhhcccccccccccccc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNILFI--AG---G-A------------FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i--~~---~-~------------~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .  ...++..+..+  .++|+|||...-  ..   + .            ...+.+.++.|++..+.|.+++.+.
T Consensus       697 ~--d~~g~~vd~rn--~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~  767 (852)
T TIGR03346       697 T--DGQGRTVDFRN--TVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQ  767 (852)
T ss_pred             e--cCCCeEEecCC--cEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHH
Confidence            4  22334444555  778888887320  00   0 0            0113355666888888888888766

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>CHL00081 chlI Mg-protoporyphyrin IX chelatase

Probab=99.68  E-value=9.7e-17  Score=132.73  Aligned_cols=159  Identities=15%  Similarity=0.231  Sum_probs=99.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-------CCeE--------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-------VPII--------   69 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-------~~~~--------   69 (225)
                      ..|+||+++|..|..++..              ...+++||.||+|||||++||++++.+.       .||.        
T Consensus        17 ~~ivGq~~~k~al~~~~~~--------------p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~   82 (350)
T CHL00081         17 TAIVGQEEMKLALILNVID--------------PKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPEL   82 (350)
T ss_pred             HHHhChHHHHHHHHHhccC--------------CCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhh
Confidence            4589999999999887732              2336899999999999999999988873       2221        


Q ss_pred             -------------------------EeccCcccccCccC-CcHHHHHHHHHHh-cchhhhhhCCCEEEEcchhhhccccc
Q psy5910          70 -------------------------VVDATSFTEAGYVG-DDVESIIQKLLHE-CDYDVELAEQSIIYIDEIDKISKKTD  122 (225)
Q Consensus        70 -------------------------~~~~~~~~~~~~~g-~~~~~~~~~~~~~-~~~~~~~~~~~vl~iDEid~l~~~~~  122 (225)
                                               .+..+... ....| -+..+.+..-... ..+.+..+.+++||+||++.+.+.  
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~te-d~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~--  159 (350)
T CHL00081         83 MSDEVREAIQNGETIETEKIKIPMVDLPLGATE-DRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDH--  159 (350)
T ss_pred             hchhhhhhhcccccccceeccccceecCCCCch-hhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHH--
Confidence                                     00000000 00111 1212111111000 134455677899999999999988  


Q ss_pred             ccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--ccccc
Q psy5910         123 VVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLE  199 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~  199 (225)
                                 +|+.|++.|+.....+...+.......+  +++++|.|..      ...+++++.+||..+  ++++.
T Consensus       160 -----------~Q~~LLeam~e~~~~ier~G~s~~~p~r--fiviaT~np~------eg~l~~~LldRf~l~i~l~~~~  219 (350)
T CHL00081        160 -----------LVDILLDSAASGWNTVEREGISIRHPAR--FVLVGSGNPE------EGELRPQLLDRFGMHAEIRTVK  219 (350)
T ss_pred             -----------HHHHHHHHHHhCCeEEeeCCeeeecCCC--EEEEeccCcc------cCCCCHHHHHHhCceeecCCCC
Confidence                       8999999998654333222222111122  8888888872      125999999999987  55554

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=99.68  E-value=6.5e-18  Score=118.94  Aligned_cols=129  Identities=22%  Similarity=0.311  Sum_probs=70.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC-cccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT-SFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  120 (225)
                      ||||.|+||+|||++|+++|+.++..|.++.+. ++..+...|..+-..-...|   .......-..|+++||++++.++
T Consensus         1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f---~~~~GPif~~ill~DEiNrappk   77 (131)
T PF07726_consen    1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEF---EFRPGPIFTNILLADEINRAPPK   77 (131)
T ss_dssp             -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEE---EEEE-TT-SSEEEEETGGGS-HH
T ss_pred             CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCee---EeecChhhhceeeecccccCCHH
Confidence            689999999999999999999999999999874 34322222211000000000   00111223469999999999998


Q ss_pred             ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910         121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN  192 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~  192 (225)
                                   +|++|+++|++...++.....  .....  +++|+|-|..=. .+.+ .|++|+++||-
T Consensus        78 -------------tQsAlLeam~Er~Vt~~g~~~--~lp~p--f~ViATqNp~e~-~Gty-~Lpea~~DRF~  130 (131)
T PF07726_consen   78 -------------TQSALLEAMEERQVTIDGQTY--PLPDP--FFVIATQNPVEQ-EGTY-PLPEAQLDRFM  130 (131)
T ss_dssp             -------------HHHHHHHHHHHSEEEETTEEE--E--SS---EEEEEE-TT---S-------HHHHTTSS
T ss_pred             -------------HHHHHHHHHHcCeEEeCCEEE--ECCCc--EEEEEecCcccc-Ccee-cCCHHHhcccc
Confidence                         899999999987655433221  12223  889999998422 2333 79999999993

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK13407 bchI magnesium chelatase subunit I; Provisional

Probab=99.68  E-value=7.6e-17  Score=133.02  Aligned_cols=163  Identities=18%  Similarity=0.258  Sum_probs=99.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-------CCe--EEeccC-
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-------VPI--IVVDAT-   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-------~~~--~~~~~~-   74 (225)
                      ..|+||+++++.+.-++..              ...+++||.|+||||||++|+++++.++       +++  ..+.+. 
T Consensus         8 ~~i~Gq~~~~~~l~~~~~~--------------~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~   73 (334)
T PRK13407          8 SAIVGQEEMKQAMVLTAID--------------PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCP   73 (334)
T ss_pred             HHhCCHHHHHHHHHHHHhc--------------cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCc
Confidence            3579999999988754410              1225899999999999999999999983       211  111100 


Q ss_pred             cc----------------------cccCccCC-cHHHHHH-HHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCC
Q psy5910          75 SF----------------------TEAGYVGD-DVESIIQ-KLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVS  130 (225)
Q Consensus        75 ~~----------------------~~~~~~g~-~~~~~~~-~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~  130 (225)
                      +.                      ......|. +....+. .-+....|.+....++++|+||++.+.++          
T Consensus        74 ~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~----------  143 (334)
T PRK13407         74 EWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDH----------  143 (334)
T ss_pred             ccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHH----------
Confidence            00                      00012221 1111110 00111124444567799999999999877          


Q ss_pred             hHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccc
Q psy5910         131 GEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLN  202 (225)
Q Consensus       131 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~  202 (225)
                         +|+.|++.|+.....+...+.......+  +++++|+|..      ...+++++++||...+..+.|..
T Consensus       144 ---~q~~Lle~mee~~v~v~r~G~~~~~p~r--fiviAt~NP~------e~~l~~aLldRF~~~v~v~~~~~  204 (334)
T PRK13407        144 ---IVDLLLDVAQSGENVVEREGLSIRHPAR--FVLVGSGNPE------EGELRPQLLDRFGLSVEVRSPRD  204 (334)
T ss_pred             ---HHHHHHHHHHcCCeEEEECCeEEecCCC--EEEEecCCcc------cCCCCHHHHhhcceEEEcCCCCc
Confidence               8999999998755333333322211223  8888888861      12589999999988865555544

>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]

Probab=99.68  E-value=3.1e-17  Score=137.76  Aligned_cols=149  Identities=19%  Similarity=0.377  Sum_probs=115.3

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc----
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE----   78 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~----   78 (225)
                      .|||++.++.++.+.+..            +......|||.|++||||..+||+|++..   +.||+.+||+.+-+    
T Consensus       224 ~iIG~S~am~~ll~~i~~------------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlE  291 (550)
T COG3604         224 GIIGRSPAMRQLLKEIEV------------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLE  291 (550)
T ss_pred             cceecCHHHHHHHHHHHH------------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHH
Confidence            689999999999887722            22344589999999999999999999988   67899999987743    


Q ss_pred             cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910          79 AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP  158 (225)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~  158 (225)
                      +...|.. ...++..+..-.|..+.+.++.+|+|||..++..             +|..|+++|.+..  +...++...-
T Consensus       292 SELFGHe-KGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~-------------lQaKLLRvLQegE--ieRvG~~r~i  355 (550)
T COG3604         292 SELFGHE-KGAFTGAINTRRGRFELADGGTLFLDEIGELPLA-------------LQAKLLRVLQEGE--IERVGGDRTI  355 (550)
T ss_pred             HHHhccc-ccccccchhccCcceeecCCCeEechhhccCCHH-------------HHHHHHHHHhhcc--eeecCCCcee
Confidence            2344544 3444555555556667789999999999999988             8999999998643  3445555555


Q ss_pred             CCCCceeEEecCcceeeccCccccHHHHHHh-hccc
Q psy5910         159 SQNPQVFNIDTTNILFIAGGAFSGIENFIIN-RINQ  193 (225)
Q Consensus       159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~  193 (225)
                      ..+  +.+|++||+         ++..++++ +|..
T Consensus       356 kVD--VRiIAATNR---------DL~~~V~~G~FRa  380 (550)
T COG3604         356 KVD--VRVIAATNR---------DLEEMVRDGEFRA  380 (550)
T ss_pred             EEE--EEEEeccch---------hHHHHHHcCcchh
Confidence            555  999999999         99999998 5644

>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]

Probab=99.67  E-value=3.2e-17  Score=138.98  Aligned_cols=152  Identities=18%  Similarity=0.338  Sum_probs=110.9

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA   79 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~   79 (225)
                      ....++|++.+++++.+.+            ..+.....+||++|++||||..+||+|++..   +.||+.+||+.+...
T Consensus       139 ~~~~liG~S~am~~l~~~i------------~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~  206 (464)
T COG2204         139 LGGELVGESPAMQQLRRLI------------AKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPEN  206 (464)
T ss_pred             ccCCceecCHHHHHHHHHH------------HHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHH
Confidence            3567899999999998877            2233455699999999999999999999988   569999999877431


Q ss_pred             ----CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910          80 ----GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK  155 (225)
Q Consensus        80 ----~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~  155 (225)
                          .+.|.. ...++....+..|.+..+.+++||||||..|+..             +|..|+++|+...  +...++.
T Consensus       207 l~ESELFGhe-kGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~-------------~Q~kLLRvLqe~~--~~rvG~~  270 (464)
T COG2204         207 LLESELFGHE-KGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLE-------------LQVKLLRVLQERE--FERVGGN  270 (464)
T ss_pred             HHHHHhhccc-ccCcCCcccccCcceeEcCCceEEeeccccCCHH-------------HHHHHHHHHHcCe--eEecCCC
Confidence                133332 1122222222235566789999999999999988             8999999998643  3344444


Q ss_pred             cCCCCCCceeEEecCcceeeccCccccHHHHHHh-hccc
Q psy5910         156 KNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-RINQ  193 (225)
Q Consensus       156 ~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~  193 (225)
                      ..-..+  +.+|++||.         ++.+.+.. ||..
T Consensus       271 ~~i~vd--vRiIaaT~~---------dL~~~v~~G~FRe  298 (464)
T COG2204         271 KPIKVD--VRIIAATNR---------DLEEEVAAGRFRE  298 (464)
T ss_pred             ccccee--eEEEeecCc---------CHHHHHHcCCcHH
Confidence            433444  999999999         88888877 5544

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.66  E-value=2.4e-16  Score=144.96  Aligned_cols=174  Identities=27%  Similarity=0.371  Sum_probs=114.6

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~   78 (225)
                      .|.+.|+||+.+++.+...+.....+....     ..|...+||+||||||||++|++|++.+   +.+++.++++.+.+
T Consensus       565 ~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~-----~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~  639 (857)
T PRK10865        565 ELHHRVIGQNEAVEAVSNAIRRSRAGLSDP-----NRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFME  639 (857)
T ss_pred             HhCCeEeCCHHHHHHHHHHHHHHHhcccCC-----CCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhh
Confidence            477899999999999998884332211110     1223468899999999999999999987   45688888866532


Q ss_pred             -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                                 ++|.|......+....       .....+||+|||++++.+.             +++.|+++|+....
T Consensus       640 ~~~~~~LiG~~pgy~g~~~~g~l~~~v-------~~~p~~vLllDEieka~~~-------------v~~~Ll~ile~g~l  699 (857)
T PRK10865        640 KHSVSRLVGAPPGYVGYEEGGYLTEAV-------RRRPYSVILLDEVEKAHPD-------------VFNILLQVLDDGRL  699 (857)
T ss_pred             hhhHHHHhCCCCcccccchhHHHHHHH-------HhCCCCeEEEeehhhCCHH-------------HHHHHHHHHhhCce
Confidence                       2344443222222222       2235689999999999987             89999999987543


Q ss_pred             CccccccccCCCCCCceeEEecCccee--ec---cC-c------------cccHHHHHHhhcccccccccccccc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNILF--IA---GG-A------------FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~--i~---~~-~------------~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .  ...++..+..+  .++|.|||..-  +.   .. .            ...+.++++.|++..+.|.++..+.
T Consensus       700 ~--d~~gr~vd~rn--~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~ed  770 (857)
T PRK10865        700 T--DGQGRTVDFRN--TVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQH  770 (857)
T ss_pred             e--cCCceEEeecc--cEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHH
Confidence            3  22233334444  66788888721  00   00 0            0124468888998888888888766

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=99.66  E-value=3.7e-16  Score=131.86  Aligned_cols=163  Identities=13%  Similarity=0.164  Sum_probs=100.3

Q ss_pred             CCCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE-ecc------
Q psy5910           1 MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV-VDA------   73 (225)
Q Consensus         1 ~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~-~~~------   73 (225)
                      |...+.|+||+++++.|+.++.........   .+.. -...+||+||||+|||++|+.+|+.+.+.-.. ..|      
T Consensus         1 ~~~f~~IiGq~~~~~~L~~~i~~~~~~~~~---~~~~-l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C   76 (394)
T PRK07940          1 MSVWDDLVGQEAVVAELRAAARAARADVAA---AGSG-MTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRAC   76 (394)
T ss_pred             CChhhhccChHHHHHHHHHHHHhccccccc---cCCC-CCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHH
Confidence            455677899999999999988543321111   1111 12358899999999999999999987553100 000      


Q ss_pred             --------CcccccCccC--CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910          74 --------TSFTEAGYVG--DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE  143 (225)
Q Consensus        74 --------~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~  143 (225)
                              .++....-.|  .. ...++.+++............|++|||+|++...             .++.|++.||
T Consensus        77 ~~~~~~~hpD~~~i~~~~~~i~-i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE  142 (394)
T PRK07940         77 RTVLAGTHPDVRVVAPEGLSIG-VDEVRELVTIAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE  142 (394)
T ss_pred             HHHhcCCCCCEEEeccccccCC-HHHHHHHHHHHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh
Confidence                    0110000001  11 1224444444321112235579999999999876             6899999998


Q ss_pred             cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +-.             .+ .++++.|+|.        +.+.+.+++|+ ..+.|+.|+.+.
T Consensus       143 ep~-------------~~-~~fIL~a~~~--------~~llpTIrSRc-~~i~f~~~~~~~  180 (394)
T PRK07940        143 EPP-------------PR-TVWLLCAPSP--------EDVLPTIRSRC-RHVALRTPSVEA  180 (394)
T ss_pred             cCC-------------CC-CeEEEEECCh--------HHChHHHHhhC-eEEECCCCCHHH
Confidence            621             11 1555555554        58999999996 468888887765

>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]

Probab=99.65  E-value=7.6e-17  Score=136.99  Aligned_cols=151  Identities=23%  Similarity=0.348  Sum_probs=107.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc---
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE---   78 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~---   78 (225)
                      +.|+|.+.+..++.+.+.            ..+.....||+.|++||||..+|++|++.+   +.||+.+||+.+-+   
T Consensus       245 ~~Iig~S~~m~~~~~~ak------------r~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~Ll  312 (560)
T COG3829         245 DDIIGESPAMLRVLELAK------------RIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLL  312 (560)
T ss_pred             hhhccCCHHHHHHHHHHH------------hhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHH
Confidence            467888877777766551            222445689999999999999999999988   67999999987743   


Q ss_pred             -cCccCCcHHHHHHHHHHh-cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          79 -AGYVGDDVESIIQKLLHE-CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        79 -~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                       +.+.|.. ...++.+... ..|.++.++++.||||||..|+..             +|..||++|++..  +...++..
T Consensus       313 ESELFGye-~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~-------------LQaKLLRVLQEke--i~rvG~t~  376 (560)
T COG3829         313 ESELFGYE-KGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLP-------------LQAKLLRVLQEKE--IERVGGTK  376 (560)
T ss_pred             HHHHhCcC-CccccccccCCCCcceeeccCCeEEehhhccCCHH-------------HHHHHHHHHhhce--EEecCCCC
Confidence             2233332 1222222222 234556679999999999999988             8999999998633  33444444


Q ss_pred             CCCCCCceeEEecCcceeeccCccccHHHHHHh-hcccc
Q psy5910         157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-RINQE  194 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-Rf~~~  194 (225)
                      ....+  +++|++||.         ++.+++.. ||..-
T Consensus       377 ~~~vD--VRIIAATN~---------nL~~~i~~G~FReD  404 (560)
T COG3829         377 PIPVD--VRIIAATNR---------NLEKMIAEGTFRED  404 (560)
T ss_pred             ceeeE--EEEEeccCc---------CHHHHHhcCcchhh
Confidence            33344  999999999         89999887 66543

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.64  E-value=6.5e-16  Score=135.27  Aligned_cols=143  Identities=22%  Similarity=0.306  Sum_probs=92.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      +.|+||+++++.|...+....            . ...+||+||+|||||++|+.+++.+++.                 
T Consensus        16 ddVIGQe~vv~~L~~al~~gR------------L-pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~   82 (700)
T PRK12323         16 TTLVGQEHVVRALTHALEQQR------------L-HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR   82 (700)
T ss_pred             HHHcCcHHHHHHHHHHHHhCC------------C-ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence            457999999999988772111            1 1245899999999999999999999762                 


Q ss_pred             ------------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHH
Q psy5910          68 ------------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQ  135 (225)
Q Consensus        68 ------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~  135 (225)
                                  ++.++...       ... ...++.+.+............|++|||+|.|...             .+
T Consensus        83 sC~~I~aG~hpDviEIdAas-------~~g-VDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~-------------Aa  141 (700)
T PRK12323         83 ACTEIDAGRFVDYIEMDAAS-------NRG-VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNH-------------AF  141 (700)
T ss_pred             HHHHHHcCCCCcceEecccc-------cCC-HHHHHHHHHHHHhchhcCCceEEEEEChHhcCHH-------------HH
Confidence                        11111110       011 1223334333222212335679999999999876             78


Q ss_pred             HHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         136 QSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       136 ~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +.||+.||+-             ..+  +.+|.+||.       +..|.+.|++|+ ..+.|..++.++
T Consensus       142 NALLKTLEEP-------------P~~--v~FILaTte-------p~kLlpTIrSRC-q~f~f~~ls~ee  187 (700)
T PRK12323        142 NAMLKTLEEP-------------PEH--VKFILATTD-------PQKIPVTVLSRC-LQFNLKQMPPGH  187 (700)
T ss_pred             HHHHHhhccC-------------CCC--ceEEEEeCC-------hHhhhhHHHHHH-HhcccCCCChHH
Confidence            9999999862             222  444444444       458999999996 446776666654

>PRK13531 regulatory ATPase RavA; Provisional

Probab=99.64  E-value=2.3e-16  Score=134.26  Aligned_cols=160  Identities=14%  Similarity=0.180  Sum_probs=97.8

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCccccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEA   79 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~   79 (225)
                      +|.+.|+|++++++.+..++                ....+|||.||||||||++|++++...+.  +|..+.+......
T Consensus        17 ~l~~~i~gre~vI~lll~aa----------------lag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~   80 (498)
T PRK13531         17 ALEKGLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPE   80 (498)
T ss_pred             HHhhhccCcHHHHHHHHHHH----------------ccCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcH
Confidence            46788999999999999988                66789999999999999999999998743  4444433211111


Q ss_pred             CccCCc-HHHHH-HHHHHh-cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          80 GYVGDD-VESII-QKLLHE-CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        80 ~~~g~~-~~~~~-~~~~~~-~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                      ...|.. +.... ..-|.. ..+.+.  ...++|+|||+++.++             +|+.|+.+|++..+...   +..
T Consensus        81 DLfG~l~i~~~~~~g~f~r~~~G~L~--~A~lLfLDEI~rasp~-------------~QsaLLeam~Er~~t~g---~~~  142 (498)
T PRK13531         81 EVFGPLSIQALKDEGRYQRLTSGYLP--EAEIVFLDEIWKAGPA-------------ILNTLLTAINERRFRNG---AHE  142 (498)
T ss_pred             HhcCcHHHhhhhhcCchhhhcCCccc--cccEEeecccccCCHH-------------HHHHHHHHHHhCeEecC---CeE
Confidence            222321 01000 011110 001110  2239999999999888             89999999987655432   222


Q ss_pred             CCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910         157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL  201 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~  201 (225)
                      .+...  -+++.+||.+=-    .....+++.+||-.++..+.|.
T Consensus       143 ~~lp~--rfiv~ATN~LPE----~g~~leAL~DRFliri~vp~l~  181 (498)
T PRK13531        143 EKIPM--RLLVTASNELPE----ADSSLEALYDRMLIRLWLDKVQ  181 (498)
T ss_pred             EeCCC--cEEEEECCCCcc----cCCchHHhHhhEEEEEECCCCC
Confidence            22222  344444454100    0124469999997776666665

>PRK13342 recombination factor protein RarA; Reviewed

Probab=99.64  E-value=5.3e-16  Score=132.70  Aligned_cols=138  Identities=21%  Similarity=0.304  Sum_probs=94.4

Q ss_pred             eeechhhHHhh---heeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           6 HIIGQHETKKI---VSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         6 ~i~G~~~~~~~---l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      .++||++++..   +...+..              ....+++|+||||||||++|+.+++.++.+++.+++....     
T Consensus        13 d~vGq~~~v~~~~~L~~~i~~--------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~-----   73 (413)
T PRK13342         13 EVVGQEHLLGPGKPLRRMIEA--------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSG-----   73 (413)
T ss_pred             HhcCcHHHhCcchHHHHHHHc--------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccc-----
Confidence            46999998766   6665511              1224789999999999999999999999999988875421     


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                          ...++.++...........+.||||||++.+...             .++.|+..++...                
T Consensus        74 ----~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~-------------~q~~LL~~le~~~----------------  120 (413)
T PRK13342         74 ----VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA-------------QQDALLPHVEDGT----------------  120 (413)
T ss_pred             ----HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH-------------HHHHHHHHhhcCc----------------
Confidence                1122333333211111236789999999999866             6889999988532                


Q ss_pred             ceeEEecC--cceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         163 QVFNIDTT--NILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       163 ~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       ++++.++  |.       ...+++++++|+ ..+.|+.++.+.
T Consensus       121 -iilI~att~n~-------~~~l~~aL~SR~-~~~~~~~ls~e~  155 (413)
T PRK13342        121 -ITLIGATTENP-------SFEVNPALLSRA-QVFELKPLSEED  155 (413)
T ss_pred             -EEEEEeCCCCh-------hhhccHHHhccc-eeeEeCCCCHHH
Confidence             4444433  33       346889999998 447777776654

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.64  E-value=7.2e-16  Score=131.58  Aligned_cols=140  Identities=24%  Similarity=0.324  Sum_probs=89.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVP----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~----------------   67 (225)
                      +.++||++++..|..++...              ..+ .+||+||+|||||++|+.+|+.+++.                
T Consensus        18 ~dvVGQe~iv~~L~~~i~~~--------------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~   83 (484)
T PRK14956         18 RDVIHQDLAIGALQNALKSG--------------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLE   83 (484)
T ss_pred             HHHhChHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHH
Confidence            35699999999988876211              112 37899999999999999999998763                


Q ss_pred             --------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910          68 --------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL  139 (225)
Q Consensus        68 --------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll  139 (225)
                              ++.+++..     -.|   ...++.+..............|++|||+|.+...             .+++|+
T Consensus        84 i~~g~~~dviEIdaas-----~~g---Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~-------------A~NALL  142 (484)
T PRK14956         84 ITKGISSDVLEIDAAS-----NRG---IENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQ-------------SFNALL  142 (484)
T ss_pred             HHccCCccceeechhh-----ccc---HHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHH-------------HHHHHH
Confidence                    11111110     011   1122333322211112235579999999999876             799999


Q ss_pred             HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccc
Q psy5910         140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLN  202 (225)
Q Consensus       140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~  202 (225)
                      +.||+-             ..+  +++|.+|+.       +..+.+++++|+. .+.|..++.
T Consensus       143 KtLEEP-------------p~~--viFILaTte-------~~kI~~TI~SRCq-~~~f~~ls~  182 (484)
T PRK14956        143 KTLEEP-------------PAH--IVFILATTE-------FHKIPETILSRCQ-DFIFKKVPL  182 (484)
T ss_pred             HHhhcC-------------CCc--eEEEeecCC-------hhhccHHHHhhhh-eeeecCCCH
Confidence            999862             122  555555554       4689999999963 245544443

>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I

Probab=99.63  E-value=5.1e-16  Score=128.40  Aligned_cols=163  Identities=18%  Similarity=0.274  Sum_probs=99.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeE--------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-------NVPII--------   69 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~--------   69 (225)
                      ..|+||+++|..|.-++..              ...++++|.|+||+||||++++++..+       ++++-        
T Consensus         4 ~~ivgq~~~~~al~~~~~~--------------~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (337)
T TIGR02030         4 TAIVGQDEMKLALLLNVID--------------PKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM   69 (337)
T ss_pred             cccccHHHHHHHHHHHhcC--------------CCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence            4689999999888666511              224689999999999999999999887       22221        


Q ss_pred             -----Ee--cc-------------Ccc----cccCccCC-cHHHHHH-HHHHhcchhhhhhCCCEEEEcchhhhcccccc
Q psy5910          70 -----VV--DA-------------TSF----TEAGYVGD-DVESIIQ-KLLHECDYDVELAEQSIIYIDEIDKISKKTDV  123 (225)
Q Consensus        70 -----~~--~~-------------~~~----~~~~~~g~-~~~~~~~-~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~  123 (225)
                           ..  ..             .++    .+..+.|. +....+. .-+....+.+..+.++++|+||++.+.+.   
T Consensus        70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~---  146 (337)
T TIGR02030        70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDH---  146 (337)
T ss_pred             cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHH---
Confidence                 00  00             000    00012222 1111110 00111124455667899999999999877   


Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccc
Q psy5910         124 VSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLN  202 (225)
Q Consensus       124 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~  202 (225)
                                +|+.|+++|+.....+...+.......+  +++++|.|..      ...+++++++||..++..+.|..
T Consensus       147 ----------~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r--~iviat~np~------eg~l~~~LldRf~l~i~l~~p~~  207 (337)
T TIGR02030       147 ----------LVDVLLDVAASGWNVVEREGISIRHPAR--FVLVGSGNPE------EGELRPQLLDRFGLHAEIRTVRD  207 (337)
T ss_pred             ----------HHHHHHHHHHhCCeEEEECCEEEEcCCC--EEEEeccccc------cCCCCHHHHhhcceEEECCCCCC
Confidence                      8999999998653333222222111123  7888888761      12589999999998855555543

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.

>PHA02244 ATPase-like protein

Probab=99.63  E-value=8.9e-16  Score=126.65  Aligned_cols=137  Identities=17%  Similarity=0.261  Sum_probs=91.8

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc--ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT--EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      ..+|||+||||||||++|+++|+.++.+++.++...-.  -.++.... .     .+.......+...+++++|||++.+
T Consensus       119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~-g-----~~~dgpLl~A~~~GgvLiLDEId~a  192 (383)
T PHA02244        119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDAN-G-----KFHETPFYEAFKKGGLFFIDEIDAS  192 (383)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhccccccc-c-----cccchHHHHHhhcCCEEEEeCcCcC
Confidence            35899999999999999999999999999998853100  00111111 0     1111111112357899999999999


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeecc-Cc---cccHHHHHHhhccc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG-GA---FSGIENFIINRINQ  193 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~-~~---~~~l~~al~~Rf~~  193 (225)
                      .+.             ++..|..+++......  .++....+.+  +.+|+|+|...--+ +.   ...+++|+++||..
T Consensus       193 ~p~-------------vq~~L~~lLd~r~l~l--~g~~i~~h~~--FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~  255 (383)
T PHA02244        193 IPE-------------ALIIINSAIANKFFDF--ADERVTAHED--FRVISAGNTLGKGADHIYVARNKIDGATLDRFAP  255 (383)
T ss_pred             CHH-------------HHHHHHHHhccCeEEe--cCcEEecCCC--EEEEEeeCCCccCcccccCCCcccCHHHHhhcEE
Confidence            987             7899999998653332  2333334555  99999999854222 11   25899999999965


Q ss_pred             c-ccccc
Q psy5910         194 E-TNFLE  199 (225)
Q Consensus       194 ~-i~~~~  199 (225)
                      . +.|+.
T Consensus       256 I~~dyp~  262 (383)
T PHA02244        256 IEFDYDE  262 (383)
T ss_pred             eeCCCCc
Confidence            4 55544

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.63  E-value=1.1e-15  Score=131.95  Aligned_cols=143  Identities=25%  Similarity=0.358  Sum_probs=91.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      +.++||+++++.|...+...             ..+..+||+|||||||||+|+++|+.+++.                 
T Consensus        14 ~divGq~~i~~~L~~~i~~~-------------~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i   80 (472)
T PRK14962         14 SEVVGQDHVKKLIINALKKN-------------SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSI   80 (472)
T ss_pred             HHccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHH
Confidence            34799999999888766211             111247899999999999999999998652                 


Q ss_pred             -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                             ++.++++.     ..|   ...++.+..............|++|||++.+...             .++.|+.
T Consensus        81 ~~g~~~dv~el~aa~-----~~g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~-------------a~~~LLk  139 (472)
T PRK14962         81 DEGTFMDVIELDAAS-----NRG---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKE-------------AFNALLK  139 (472)
T ss_pred             hcCCCCccEEEeCcc-----cCC---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHH-------------HHHHHHH
Confidence                   33333221     111   1123333333211112235679999999999755             6889999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .|+...             ..  +++|.+++.       +..+++++++|+. .+.|..++.+.
T Consensus       140 ~LE~p~-------------~~--vv~Ilattn-------~~kl~~~L~SR~~-vv~f~~l~~~e  180 (472)
T PRK14962        140 TLEEPP-------------SH--VVFVLATTN-------LEKVPPTIISRCQ-VIEFRNISDEL  180 (472)
T ss_pred             HHHhCC-------------Cc--EEEEEEeCC-------hHhhhHHHhcCcE-EEEECCccHHH
Confidence            998521             11  444433332       4588999999974 57777776654

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=99.62  E-value=5.1e-16  Score=136.18  Aligned_cols=161  Identities=25%  Similarity=0.311  Sum_probs=98.3

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .++||+++++.++.++.              .....++||+||||||||++|+++++.+          +.+|+.++|..
T Consensus        66 ~iiGqs~~i~~l~~al~--------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~  131 (531)
T TIGR02902        66 EIIGQEEGIKALKAALC--------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT  131 (531)
T ss_pred             HeeCcHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence            47999999999986541              1233589999999999999999998753          35789998864


Q ss_pred             c--cccCc----cCCcHHHHH--HHHH------HhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910          76 F--TEAGY----VGDDVESII--QKLL------HECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL  141 (225)
Q Consensus        76 ~--~~~~~----~g~~~~~~~--~~~~------~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~  141 (225)
                      .  .+.++    .|..-....  ...+      ....+.+....+++|||||++.+.+.             .|+.|++.
T Consensus       132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~  198 (531)
T TIGR02902       132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKV  198 (531)
T ss_pred             ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHH
Confidence            2  11011    010000000  0000      01123344567899999999999988             89999999


Q ss_pred             HhcCCcCcccccc----------------ccCCCCCCceeEE-ecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         142 IEGVNLSITSLAE----------------KKNPSQNPQVFNI-DTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       142 l~~~~~~~~~~~~----------------~~~~~~~~~~~~i-~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      |+.....+.....                ...|.+   +.+| +|++.       ++.+++++++|+. .+.|+....++
T Consensus       199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~rlI~ATt~~-------p~~L~paLrsR~~-~I~f~pL~~ee  267 (531)
T TIGR02902       199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPAD---FRLIGATTRN-------PEEIPPALRSRCV-EIFFRPLLDEE  267 (531)
T ss_pred             HHhCeeeeccccccccCcccccchhhhcccCcccc---eEEEEEecCC-------cccCChHHhhhhh-eeeCCCCCHHH
Confidence            9864332211000                001111   3333 33333       6789999999973 46666665543

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>KOG0989|consensus

Probab=99.62  E-value=4e-16  Score=123.92  Aligned_cols=139  Identities=20%  Similarity=0.273  Sum_probs=86.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC------eEEeccCcccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP------IIVVDATSFTE   78 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~------~~~~~~~~~~~   78 (225)
                      +.+.||+.++..|..++..              ...+++|||||||||||+.|+++|++++.+      +...+.++-..
T Consensus        36 de~~gQe~vV~~L~~a~~~--------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG  101 (346)
T KOG0989|consen   36 DELAGQEHVVQVLKNALLR--------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG  101 (346)
T ss_pred             HhhcchHHHHHHHHHHHhh--------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence            3569999999999888821              223589999999999999999999999663      22233333221


Q ss_pred             cCccCCcHHHHHHHHHHhcchhh--hhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          79 AGYVGDDVESIIQKLLHECDYDV--ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                      .....+.. +.+..+........  .....-|++|||.|.|...             +|++|.+.||...          
T Consensus       102 isvvr~Ki-k~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE~~s----------  157 (346)
T KOG0989|consen  102 ISVVREKI-KNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTMEDFS----------  157 (346)
T ss_pred             ccchhhhh-cCHHHHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHhccc----------
Confidence            11111110 01111110000000  0113379999999999977             8999999999733          


Q ss_pred             CCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910         157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ  193 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~  193 (225)
                         ..  .++|..+|.       .+.|+..+.+|..+
T Consensus       158 ---~~--trFiLIcny-------lsrii~pi~SRC~K  182 (346)
T KOG0989|consen  158 ---RT--TRFILICNY-------LSRIIRPLVSRCQK  182 (346)
T ss_pred             ---cc--eEEEEEcCC-------hhhCChHHHhhHHH
Confidence               12  444444454       56889999998543

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=99.62  E-value=1.4e-15  Score=137.51  Aligned_cols=156  Identities=24%  Similarity=0.276  Sum_probs=101.7

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .++|.++.++.+.+.+..              ....++||+||||||||++|+.++...          +..++.++...
T Consensus       187 ~liGR~~ei~~~i~iL~r--------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~  252 (758)
T PRK11034        187 PLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS  252 (758)
T ss_pred             cCcCCCHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH
Confidence            478888888888776621              123588999999999999999999765          34455554443


Q ss_pred             ccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          76 FTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                      +.. ..|.|+- +..++.++...    ....++||||||++.+...+...    .....+.+.|..++....        
T Consensus       253 llaG~~~~Ge~-e~rl~~l~~~l----~~~~~~ILfIDEIh~L~g~g~~~----~g~~d~~nlLkp~L~~g~--------  315 (758)
T PRK11034        253 LLAGTKYRGDF-EKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAAS----GGQVDAANLIKPLLSSGK--------  315 (758)
T ss_pred             HhcccchhhhH-HHHHHHHHHHH----HhcCCCEEEeccHHHHhccCCCC----CcHHHHHHHHHHHHhCCC--------
Confidence            321 2355543 44555555543    34568899999999998664211    112335555666665422        


Q ss_pred             ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                               +.+|++|+..-.  ...-..|+++.|||+ .|.++.|+.++
T Consensus       316 ---------i~vIgATt~~E~--~~~~~~D~AL~rRFq-~I~v~ePs~~~  353 (758)
T PRK11034        316 ---------IRVIGSTTYQEF--SNIFEKDRALARRFQ-KIDITEPSIEE  353 (758)
T ss_pred             ---------eEEEecCChHHH--HHHhhccHHHHhhCc-EEEeCCCCHHH
Confidence                     788888876100  001157999999996 68888888876

>PLN03025 replication factor C subunit; Provisional

Probab=99.62  E-value=1.1e-15  Score=126.62  Aligned_cols=143  Identities=22%  Similarity=0.254  Sum_probs=89.8

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC-----CeEEeccCcccccC
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV-----PIIVVDATSFTEAG   80 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~~~~   80 (225)
                      .++||+++++.|...+..              ...+++||+||||||||++|+++|+.+..     .++.+++++.    
T Consensus        14 ~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~----   75 (319)
T PLN03025         14 DIVGNEDAVSRLQVIARD--------------GNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDD----   75 (319)
T ss_pred             HhcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeeccccc----
Confidence            458999999988775521              12247999999999999999999998732     2444554432    


Q ss_pred             ccCCc-HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          81 YVGDD-VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        81 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                       .|.+ +...+.. +.............|++|||+|.+...             .|+.|++.|+....            
T Consensus        76 -~~~~~vr~~i~~-~~~~~~~~~~~~~kviiiDE~d~lt~~-------------aq~aL~~~lE~~~~------------  128 (319)
T PLN03025         76 -RGIDVVRNKIKM-FAQKKVTLPPGRHKIVILDEADSMTSG-------------AQQALRRTMEIYSN------------  128 (319)
T ss_pred             -ccHHHHHHHHHH-HHhccccCCCCCeEEEEEechhhcCHH-------------HHHHHHHHHhcccC------------
Confidence             1211 1111111 111100111124579999999999866             78999999985221            


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       .  ..++.++|.       ...+.+++++|+ ..+.|+.++.+.
T Consensus       129 -~--t~~il~~n~-------~~~i~~~L~SRc-~~i~f~~l~~~~  162 (319)
T PLN03025        129 -T--TRFALACNT-------SSKIIEPIQSRC-AIVRFSRLSDQE  162 (319)
T ss_pred             -C--ceEEEEeCC-------ccccchhHHHhh-hcccCCCCCHHH
Confidence             1  233334443       447788999986 358888777654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=99.62  E-value=1.2e-15  Score=140.26  Aligned_cols=156  Identities=19%  Similarity=0.264  Sum_probs=105.7

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .++|+++.++++.+.+..              ....+++|+||||||||++++.+|..+          +.+++.++.+.
T Consensus       179 ~vigr~~ei~~~i~iL~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~  244 (857)
T PRK10865        179 PVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA  244 (857)
T ss_pred             cCCCCHHHHHHHHHHHhc--------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence            479999988888775511              234589999999999999999999987          67788887766


Q ss_pred             ccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          76 FTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                      +.. ..|.|+- +..+..++....   ....++||||||++.+.......     .+.++++.|...|....        
T Consensus       245 l~ag~~~~g~~-e~~lk~~~~~~~---~~~~~~ILfIDEih~l~~~~~~~-----~~~d~~~~lkp~l~~g~--------  307 (857)
T PRK10865        245 LVAGAKYRGEF-EERLKGVLNDLA---KQEGNVILFIDELHTMVGAGKAD-----GAMDAGNMLKPALARGE--------  307 (857)
T ss_pred             hhhccchhhhh-HHHHHHHHHHHH---HcCCCeEEEEecHHHhccCCCCc-----cchhHHHHhcchhhcCC--------
Confidence            532 3466653 555666665431   12367899999999998664321     12235677777775422        


Q ss_pred             ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                               +.+|++|+..=.  ...-++|+|+.|||+. |.++.|+.+.
T Consensus       308 ---------l~~IgaTt~~e~--r~~~~~d~al~rRf~~-i~v~eP~~~~  345 (857)
T PRK10865        308 ---------LHCVGATTLDEY--RQYIEKDAALERRFQK-VFVAEPSVED  345 (857)
T ss_pred             ---------CeEEEcCCCHHH--HHHhhhcHHHHhhCCE-EEeCCCCHHH
Confidence                     778888877100  0001489999999974 6667776654

>TIGR02442 Cob-chelat-sub cobaltochelatase subunit

Probab=99.61  E-value=9.5e-16  Score=137.17  Aligned_cols=161  Identities=17%  Similarity=0.215  Sum_probs=105.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-------------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-------------------   65 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-------------------   65 (225)
                      ..|+||++++..+..++..              ...++|||.|++|||||++|+++++.+.                   
T Consensus         4 ~~ivGq~~~~~al~~~av~--------------~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~   69 (633)
T TIGR02442         4 TAIVGQEDLKLALLLNAVD--------------PRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE   69 (633)
T ss_pred             chhcChHHHHHHHHHHhhC--------------CCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence            4689999999888766611              1225799999999999999999999882                   


Q ss_pred             ----------------CCeEEeccCcccccCccC-CcHHHHHHH-HHHhcchhhhhhCCCEEEEcchhhhcccccccCCC
Q psy5910          66 ----------------VPIIVVDATSFTEAGYVG-DDVESIIQK-LLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGK  127 (225)
Q Consensus        66 ----------------~~~~~~~~~~~~~~~~~g-~~~~~~~~~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~  127 (225)
                                      .||+.+.++.... ...| .+....+.. -+....+.+..+.++++||||++.+.+.       
T Consensus        70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~-~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~-------  141 (633)
T TIGR02442        70 WCEECRRKYRPSEQRPVPFVNLPLGATED-RVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDH-------  141 (633)
T ss_pred             cChhhhhcccccccCCCCeeeCCCCCcHH-HcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHH-------
Confidence                            4565555543322 2333 232222210 0011134455668899999999999988       


Q ss_pred             CCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910         128 DVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL  201 (225)
Q Consensus       128 ~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~  201 (225)
                            +|+.|++.|+.....+...+.......+  +.+|+|+|.   +   ...+.+++++||+..+..+.+.
T Consensus       142 ------~q~~Ll~~le~g~~~v~r~g~~~~~~~~--~~lIat~np---~---eg~l~~~L~dR~~l~i~v~~~~  201 (633)
T TIGR02442       142 ------LVDVLLDAAAMGVNRVEREGLSVSHPAR--FVLIGTMNP---E---EGDLRPQLLDRFGLCVDVAAPR  201 (633)
T ss_pred             ------HHHHHHHHHhcCCEEEEECCceeeecCC--eEEEEecCC---C---CCCCCHHHHhhcceEEEccCCC
Confidence                  8999999998654333333222211223  788888886   1   1258899999998876666554

A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=99.61  E-value=1.8e-15  Score=138.87  Aligned_cols=157  Identities=18%  Similarity=0.228  Sum_probs=104.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~   74 (225)
                      +.++|+++.++++.+.+..              ....+++|+||||||||++++.+|+.+          +.+++.++.+
T Consensus       187 d~~iGr~~ei~~~i~~l~r--------------~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~  252 (852)
T TIGR03345       187 DPVLGRDDEIRQMIDILLR--------------RRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG  252 (852)
T ss_pred             CcccCCHHHHHHHHHHHhc--------------CCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehh
Confidence            3568999988888765511              233589999999999999999999876          2446666666


Q ss_pred             cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          75 SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        75 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      .+.. ..|.|+- +..++.++....   ....+.||||||++.+...++..++     .++-+.|...|+...       
T Consensus       253 ~l~ag~~~~ge~-e~~lk~ii~e~~---~~~~~~ILfIDEih~l~~~g~~~~~-----~d~~n~Lkp~l~~G~-------  316 (852)
T TIGR03345       253 LLQAGASVKGEF-ENRLKSVIDEVK---ASPQPIILFIDEAHTLIGAGGQAGQ-----GDAANLLKPALARGE-------  316 (852)
T ss_pred             hhhcccccchHH-HHHHHHHHHHHH---hcCCCeEEEEeChHHhccCCCcccc-----ccHHHHhhHHhhCCC-------
Confidence            5532 2455543 556666666541   1236789999999999876432111     123456777776432       


Q ss_pred             cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                +.+|++|+..-.  ..+-.+|+|+.|||. .|.++.|+.+.
T Consensus       317 ----------l~~IgaTT~~e~--~~~~~~d~AL~rRf~-~i~v~eps~~~  354 (852)
T TIGR03345       317 ----------LRTIAATTWAEY--KKYFEKDPALTRRFQ-VVKVEEPDEET  354 (852)
T ss_pred             ----------eEEEEecCHHHH--hhhhhccHHHHHhCe-EEEeCCCCHHH
Confidence                      777777765000  001258999999995 58888888876

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=99.61  E-value=2.6e-15  Score=132.92  Aligned_cols=142  Identities=22%  Similarity=0.252  Sum_probs=91.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCe---------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPI---------------   68 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~---------------   68 (225)
                      +.|+||+++++.|...+...              ...+ +||+||+|||||++|+.+|+.+++..               
T Consensus        16 ~divGQe~vv~~L~~~l~~~--------------rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~   81 (647)
T PRK07994         16 AEVVGQEHVLTALANALDLG--------------RLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCRE   81 (647)
T ss_pred             HHhcCcHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHH
Confidence            45699999999998777211              1124 57999999999999999999997631               


Q ss_pred             ---------EEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910          69 ---------IVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL  139 (225)
Q Consensus        69 ---------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll  139 (225)
                               +.+++..     ..  . ...++.+..............|++|||+|.|...             .+++|+
T Consensus        82 i~~g~~~D~ieidaas-----~~--~-VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~-------------a~NALL  140 (647)
T PRK07994         82 IEQGRFVDLIEIDAAS-----RT--K-VEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALL  140 (647)
T ss_pred             HHcCCCCCceeecccc-----cC--C-HHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHH-------------HHHHHH
Confidence                     1111110     01  1 1123344333221112235679999999999976             799999


Q ss_pred             HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +.||+-             ..+  +.+|.+|+.       +..|.+.+++|+ ..+.|..++.++
T Consensus       141 KtLEEP-------------p~~--v~FIL~Tt~-------~~kLl~TI~SRC-~~~~f~~Ls~~e  182 (647)
T PRK07994        141 KTLEEP-------------PEH--VKFLLATTD-------PQKLPVTILSRC-LQFHLKALDVEQ  182 (647)
T ss_pred             HHHHcC-------------CCC--eEEEEecCC-------ccccchHHHhhh-eEeeCCCCCHHH
Confidence            999962             222  333333333       358889999994 557777777654

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.60  E-value=2.2e-15  Score=133.67  Aligned_cols=143  Identities=21%  Similarity=0.257  Sum_probs=91.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      +.|+||+++++.|...+...             .-...+||+||+|||||++|+.+++.+++.                 
T Consensus        16 dEVIGQe~Vv~~L~~aL~~g-------------RL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I   82 (830)
T PRK07003         16 ASLVGQEHVVRALTHALDGG-------------RLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI   82 (830)
T ss_pred             HHHcCcHHHHHHHHHHHhcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence            45799999999998876211             011245799999999999999999998753                 


Q ss_pred             -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                             ++.++..+       ... ...++.+++............|+||||+|.|...             .++.|++
T Consensus        83 ~~G~h~DviEIDAas-------~rg-VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~-------------A~NALLK  141 (830)
T PRK07003         83 DEGRFVDYVEMDAAS-------NRG-VDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH-------------AFNAMLK  141 (830)
T ss_pred             hcCCCceEEEecccc-------ccc-HHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-------------HHHHHHH
Confidence                   11111110       011 1123333333211112235679999999999866             7899999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .||+..             .+  +.+|.+||.       ...|.+.|++|+ ..+.|.....++
T Consensus       142 tLEEPP-------------~~--v~FILaTtd-------~~KIp~TIrSRC-q~f~Fk~Ls~ee  182 (830)
T PRK07003        142 TLEEPP-------------PH--VKFILATTD-------PQKIPVTVLSRC-LQFNLKQMPAGH  182 (830)
T ss_pred             HHHhcC-------------CC--eEEEEEECC-------hhhccchhhhhe-EEEecCCcCHHH
Confidence            999632             22  455555544       458899999996 346666655543

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.59  E-value=4.9e-15  Score=133.62  Aligned_cols=150  Identities=17%  Similarity=0.220  Sum_probs=89.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeE-E-eccC------c
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPII-V-VDAT------S   75 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~-~-~~~~------~   75 (225)
                      +.|+||+++++.|..++...              ...+ +||+||+|||||++||.+|+.+++... . ..|.      .
T Consensus        16 ddIIGQe~Iv~~LknaI~~~--------------rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~   81 (944)
T PRK14949         16 EQMVGQSHVLHALTNALTQQ--------------RLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVE   81 (944)
T ss_pred             HHhcCcHHHHHHHHHHHHhC--------------CCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHH
Confidence            35689999999988766211              1135 479999999999999999999976411 0 0010      0


Q ss_pred             cccc------CccCC--cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          76 FTEA------GYVGD--DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        76 ~~~~------~~~g~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                      +...      -+.+.  .....++.+..............|+||||++.|...             .++.|++.||+.. 
T Consensus        82 i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~e-------------AqNALLKtLEEPP-  147 (944)
T PRK14949         82 IAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRS-------------SFNALLKTLEEPP-  147 (944)
T ss_pred             HhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHHhccC-
Confidence            0000      01111  001223444333221112235679999999999876             8999999999622 


Q ss_pred             CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                  .+  +++|.+++.       ...|.+.|++|+ ..+.|.....+.
T Consensus       148 ------------~~--vrFILaTTe-------~~kLl~TIlSRC-q~f~fkpLs~eE  182 (944)
T PRK14949        148 ------------EH--VKFLLATTD-------PQKLPVTVLSRC-LQFNLKSLTQDE  182 (944)
T ss_pred             ------------CC--eEEEEECCC-------chhchHHHHHhh-eEEeCCCCCHHH
Confidence                        22  333333333       347888999985 336666665543

>KOG1051|consensus

Probab=99.59  E-value=3.1e-15  Score=134.95  Aligned_cols=142  Identities=25%  Similarity=0.359  Sum_probs=108.7

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc---
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS---   75 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~---   75 (225)
                      .|.++|+||++++..+.++|.....+....      .+...++|.||.|+|||.||+++|..+   ...++.++.+.   
T Consensus       559 ~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~------~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e  632 (898)
T KOG1051|consen  559 RLHERVIGQDEAVAAIAAAIRRSRAGLKDP------NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE  632 (898)
T ss_pred             HHHhhccchHHHHHHHHHHHHhhhcccCCC------CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh
Confidence            367899999999999999995544332111      234578899999999999999999998   34588888876   


Q ss_pred             -----ccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910          76 -----FTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT  150 (225)
Q Consensus        76 -----~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  150 (225)
                           -..++|+|.+....++...+       ....+||+|||||++.+.             +++.|+++||.+..  .
T Consensus       633 vskligsp~gyvG~e~gg~Lteavr-------rrP~sVVLfdeIEkAh~~-------------v~n~llq~lD~Grl--t  690 (898)
T KOG1051|consen  633 VSKLIGSPPGYVGKEEGGQLTEAVK-------RRPYSVVLFEEIEKAHPD-------------VLNILLQLLDRGRL--T  690 (898)
T ss_pred             hhhccCCCcccccchhHHHHHHHHh-------cCCceEEEEechhhcCHH-------------HHHHHHHHHhcCcc--c
Confidence                 34468999887766665543       357899999999999988             89999999998544  3


Q ss_pred             ccccccCCCCCCceeEEecCcce
Q psy5910         151 SLAEKKNPSQNPQVFNIDTTNIL  173 (225)
Q Consensus       151 ~~~~~~~~~~~~~~~~i~ttn~~  173 (225)
                      ...++.-.+.+  .++|+|+|..
T Consensus       691 Ds~Gr~Vd~kN--~I~IMTsn~~  711 (898)
T KOG1051|consen  691 DSHGREVDFKN--AIFIMTSNVG  711 (898)
T ss_pred             cCCCcEeeccc--eEEEEecccc
Confidence            44555556666  7888888773

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.58  E-value=5.6e-15  Score=128.70  Aligned_cols=141  Identities=23%  Similarity=0.273  Sum_probs=89.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVP----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~----------------   67 (225)
                      +.|+||+++++.|..++...              ... .+||+||+|||||++|+.+|+.+++.                
T Consensus        16 ~divGq~~v~~~L~~~~~~~--------------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~   81 (509)
T PRK14958         16 QEVIGQAPVVRALSNALDQQ--------------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCRE   81 (509)
T ss_pred             HHhcCCHHHHHHHHHHHHhC--------------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHH
Confidence            45799999999998877211              112 46899999999999999999999653                


Q ss_pred             --------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910          68 --------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL  139 (225)
Q Consensus        68 --------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll  139 (225)
                              ++.+++..     .  .. ...++.+.+............|++|||+|.+...             .+++|+
T Consensus        82 i~~g~~~d~~eidaas-----~--~~-v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~naLL  140 (509)
T PRK14958         82 IDEGRFPDLFEVDAAS-----R--TK-VEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNALL  140 (509)
T ss_pred             HhcCCCceEEEEcccc-----c--CC-HHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HHHHHH
Confidence                    22232211     1  11 1123444433222222335679999999999976             789999


Q ss_pred             HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                      +.||+.             ..+  +.+|.+|+.       +..+.+.+++|+ ..+.|...+.+
T Consensus       141 k~LEep-------------p~~--~~fIlattd-------~~kl~~tI~SRc-~~~~f~~l~~~  181 (509)
T PRK14958        141 KTLEEP-------------PSH--VKFILATTD-------HHKLPVTVLSRC-LQFHLAQLPPL  181 (509)
T ss_pred             HHHhcc-------------CCC--eEEEEEECC-------hHhchHHHHHHh-hhhhcCCCCHH
Confidence            999962             122  333333332       347788899986 33566555443

>CHL00095 clpC Clp protease ATP binding subunit

Probab=99.58  E-value=5.6e-15  Score=135.89  Aligned_cols=155  Identities=19%  Similarity=0.218  Sum_probs=106.7

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .++|.++.++++.+.+..              ..+.+++|+||||||||++++.+|..+          +.+++.++.+.
T Consensus       180 ~~igr~~ei~~~~~~L~r--------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~  245 (821)
T CHL00095        180 PVIGREKEIERVIQILGR--------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL  245 (821)
T ss_pred             CCCCcHHHHHHHHHHHcc--------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH
Confidence            579999999999887621              244689999999999999999999876          36788888876


Q ss_pred             cc-ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          76 FT-EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        76 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                      +. ..+|.|+ .+..+..+++.+    ....+.||||||++.+.......++     ..+.+.|...|....        
T Consensus       246 l~ag~~~~ge-~e~rl~~i~~~~----~~~~~~ILfiDEih~l~~~g~~~g~-----~~~a~lLkp~l~rg~--------  307 (821)
T CHL00095        246 LLAGTKYRGE-FEERLKRIFDEI----QENNNIILVIDEVHTLIGAGAAEGA-----IDAANILKPALARGE--------  307 (821)
T ss_pred             HhccCCCccH-HHHHHHHHHHHH----HhcCCeEEEEecHHHHhcCCCCCCc-----ccHHHHhHHHHhCCC--------
Confidence            53 3457665 356677777654    3346789999999999866432111     135667777776432        


Q ss_pred             ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                               +.+|++|+..=.  ..+...|+++.+||.. |.++.|+.++
T Consensus       308 ---------l~~IgaTt~~ey--~~~ie~D~aL~rRf~~-I~v~ep~~~e  345 (821)
T CHL00095        308 ---------LQCIGATTLDEY--RKHIEKDPALERRFQP-VYVGEPSVEE  345 (821)
T ss_pred             ---------cEEEEeCCHHHH--HHHHhcCHHHHhcceE-EecCCCCHHH
Confidence                     777777776100  0002468999999965 5666666544

>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=99.58  E-value=1.9e-15  Score=126.16  Aligned_cols=160  Identities=16%  Similarity=0.246  Sum_probs=106.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCcccccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATSFTEAG   80 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~~~~~~   80 (225)
                      +.++|.+...+.+++.+..            ......+||++|++||||+.+|+.|+...    ..||+.+||+.+.++.
T Consensus        78 ~~LIG~~~~~~~~~eqik~------------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~  145 (403)
T COG1221          78 DDLIGESPSLQELREQIKA------------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENL  145 (403)
T ss_pred             hhhhccCHHHHHHHHHHHh------------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCH
Confidence            4567777666666665521            22445699999999999999999998654    5689999999886531


Q ss_pred             ----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          81 ----YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        81 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                          ..|.. +..++.......+.++.+.++++|+||+..+.+.             .|..|+.+||.....  ..++..
T Consensus       146 ~~~eLFG~~-kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~-------------~Q~kLl~~le~g~~~--rvG~~~  209 (403)
T COG1221         146 QEAELFGHE-KGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE-------------GQEKLLRVLEEGEYR--RVGGSQ  209 (403)
T ss_pred             HHHHHhccc-cceeecccCCcCchheecCCCEEehhhhhhCCHh-------------HHHHHHHHHHcCceE--ecCCCC
Confidence                11221 1112222222235566779999999999999998             899999999975432  233322


Q ss_pred             CCCCCCceeEEecCcceeeccCccccHHHHHHh-------hccccccccccccc
Q psy5910         157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-------RINQETNFLEKLNN  203 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-------Rf~~~i~~~~~~~~  203 (225)
                      ....+  |.+|++|+.         +++.+++.       |+...|..|+-.+.
T Consensus       210 ~~~~d--VRli~AT~~---------~l~~~~~~g~dl~~rl~~~~I~LPpLrER  252 (403)
T COG1221         210 PRPVD--VRLICATTE---------DLEEAVLAGADLTRRLNILTITLPPLRER  252 (403)
T ss_pred             CcCCC--ceeeecccc---------CHHHHHHhhcchhhhhcCceecCCChhhc
Confidence            23333  889999988         78887777       44334555554443

>smart00350 MCM minichromosome maintenance proteins

Probab=99.58  E-value=1.1e-15  Score=133.74  Aligned_cols=180  Identities=17%  Similarity=0.202  Sum_probs=105.0

Q ss_pred             CcceeechhhHHhhheeeeEecccce-Eee-cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccC
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRL-FLL-KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAG   80 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~-~~~-~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~   80 (225)
                      +.-.|+|++.+|..+.-.+.   ++. +.. ++..+ ....+|||+|+||||||++|+.+++.+....+. .+......+
T Consensus       201 i~p~i~G~~~~k~~l~l~l~---gg~~~~~~~~~~~-r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~-~~~~~~~~~  275 (509)
T smart00350      201 LAPSIYGHEDIKKAILLLLF---GGVHKNLPDGMKI-RGDINILLLGDPGTAKSQLLKYVEKTAPRAVYT-TGKGSSAVG  275 (509)
T ss_pred             hCccccCcHHHHHHHHHHHh---CCCccccCCCccc-cccceEEEeCCCChhHHHHHHHHHHHcCcceEc-CCCCCCcCC
Confidence            44568899998877765541   111 111 11111 223489999999999999999999987544222 211111111


Q ss_pred             ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910          81 YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ  160 (225)
Q Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~  160 (225)
                      +.+..........+....+.+..+.+++++|||++++.+.             .|..|+++|+....++...+.......
T Consensus       276 l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~-------------~q~~L~e~me~~~i~i~k~G~~~~l~~  342 (509)
T smart00350      276 LTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDKMDDS-------------DRTAIHEAMEQQTISIAKAGITTTLNA  342 (509)
T ss_pred             ccccceEccCcceEEecCccEEecCCCEEEEechhhCCHH-------------HHHHHHHHHhcCEEEEEeCCEEEEecC
Confidence            1111100000000111123344567899999999999977             799999999876544443333322233


Q ss_pred             CCceeEEecCcceeec-------cCccccHHHHHHhhcccc---ccccccccc
Q psy5910         161 NPQVFNIDTTNILFIA-------GGAFSGIENFIINRINQE---TNFLEKLNN  203 (225)
Q Consensus       161 ~~~~~~i~ttn~~~i~-------~~~~~~l~~al~~Rf~~~---i~~~~~~~~  203 (225)
                      +  +.+|+|+|...--       +.+. .+++++++|||..   .+++.++.+
T Consensus       343 ~--~~viAa~NP~~g~y~~~~~~~~n~-~l~~~lLsRFdLi~~~~d~~~~~~d  392 (509)
T smart00350      343 R--CSVLAAANPIGGRYDPKLTPEENI-DLPAPILSRFDLLFVVLDEVDEERD  392 (509)
T ss_pred             C--cEEEEEeCCCCcccCCCcChhhcc-CCChHHhCceeeEEEecCCCChHHH
Confidence            3  8899999985310       0112 7999999999887   344444444

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.57  E-value=1e-14  Score=122.81  Aligned_cols=148  Identities=24%  Similarity=0.269  Sum_probs=88.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe--ccC--------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV--DAT--------   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~--~~~--------   74 (225)
                      +.|+||+++++.+..++...             .-+..+||+||+|||||++|+++|+.+++.....  .|.        
T Consensus        16 ~~iiGq~~~~~~l~~~~~~~-------------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~   82 (363)
T PRK14961         16 RDIIGQKHIVTAISNGLSLG-------------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI   82 (363)
T ss_pred             hhccChHHHHHHHHHHHHcC-------------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence            45689999999998766210             0112468999999999999999999986431100  000        


Q ss_pred             ------cccccCccC---CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          75 ------SFTEAGYVG---DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        75 ------~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                            ++..  +.+   .. ...++.+..............|++|||++.+...             .++.|++.|+..
T Consensus        83 ~~~~~~d~~~--~~~~~~~~-v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~-------------a~naLLk~lEe~  146 (363)
T PRK14961         83 EKGLCLDLIE--IDAASRTK-VEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRH-------------SFNALLKTLEEP  146 (363)
T ss_pred             hcCCCCceEE--ecccccCC-HHHHHHHHHHHhcCcccCCceEEEEEChhhcCHH-------------HHHHHHHHHhcC
Confidence                  1100  000   11 1223333333211111234569999999999865             688999999862


Q ss_pred             CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .             ..  +.+|.+++.       .+.+.+++++|+ ..+.|+.++.++
T Consensus       147 ~-------------~~--~~fIl~t~~-------~~~l~~tI~SRc-~~~~~~~l~~~e  182 (363)
T PRK14961        147 P-------------QH--IKFILATTD-------VEKIPKTILSRC-LQFKLKIISEEK  182 (363)
T ss_pred             C-------------CC--eEEEEEcCC-------hHhhhHHHHhhc-eEEeCCCCCHHH
Confidence            1             12  333333333       357889999997 347787777654

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.57  E-value=9.3e-15  Score=128.33  Aligned_cols=143  Identities=22%  Similarity=0.281  Sum_probs=89.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      +.|+||+++++.|..++...             .....+||+||+|||||++|+.+|+.+++.                 
T Consensus        15 ddVIGQe~vv~~L~~aI~~g-------------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I   81 (702)
T PRK14960         15 NELVGQNHVSRALSSALERG-------------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV   81 (702)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence            45699999999998877211             112356899999999999999999998762                 


Q ss_pred             -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                             ++.+++++     ..  . ...++.+..............|++|||++.+...             .++.|++
T Consensus        82 ~~g~hpDviEIDAAs-----~~--~-VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLK  140 (702)
T PRK14960         82 NEGRFIDLIEIDAAS-----RT--K-VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLK  140 (702)
T ss_pred             hcCCCCceEEecccc-----cC--C-HHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHH
Confidence                   22222211     01  1 1223344333222222235679999999999876             7899999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .|++..             ..  +.+|.+++.       ...++..+++|+ ..+.|..++.+.
T Consensus       141 tLEEPP-------------~~--v~FILaTtd-------~~kIp~TIlSRC-q~feFkpLs~eE  181 (702)
T PRK14960        141 TLEEPP-------------EH--VKFLFATTD-------PQKLPITVISRC-LQFTLRPLAVDE  181 (702)
T ss_pred             HHhcCC-------------CC--cEEEEEECC-------hHhhhHHHHHhh-heeeccCCCHHH
Confidence            998621             12  333333333       346788888886 346666665543

>KOG2028|consensus

Probab=99.56  E-value=2.4e-15  Score=122.24  Aligned_cols=114  Identities=20%  Similarity=0.311  Sum_probs=76.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCC---eEEeccCcccccCccCCcHHHHHHHHHHhcchh-hhhhCCCEEEEcchhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVP---IIVVDATSFTEAGYVGDDVESIIQKLLHECDYD-VELAEQSIIYIDEIDK  116 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~vl~iDEid~  116 (225)
                      +.++|+||||||||+||+.|+.....+   |+.+++..-.         ..-++.+|+.+... ..-.+..|+|||||++
T Consensus       163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~---------t~dvR~ife~aq~~~~l~krkTilFiDEiHR  233 (554)
T KOG2028|consen  163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAK---------TNDVRDIFEQAQNEKSLTKRKTILFIDEIHR  233 (554)
T ss_pred             CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccc---------hHHHHHHHHHHHHHHhhhcceeEEEeHHhhh
Confidence            578899999999999999999988666   5555443321         22345555554221 1224678999999999


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecC--cceeeccCccccHHHHHHhhcccc
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTT--NILFIAGGAFSGIENFIINRINQE  194 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf~~~  194 (225)
                      +...             .|..|+...|.+.                 +.+|.+|  |.-       -.+..|+++|+...
T Consensus       234 FNks-------------QQD~fLP~VE~G~-----------------I~lIGATTENPS-------Fqln~aLlSRC~Vf  276 (554)
T KOG2028|consen  234 FNKS-------------QQDTFLPHVENGD-----------------ITLIGATTENPS-------FQLNAALLSRCRVF  276 (554)
T ss_pred             hhhh-------------hhhcccceeccCc-----------------eEEEecccCCCc-------cchhHHHHhcccee
Confidence            9877             6888888888643                 5555544  442       27888999986554


Q ss_pred             cccccc
Q psy5910         195 TNFLEK  200 (225)
Q Consensus       195 i~~~~~  200 (225)
                      +--+.+
T Consensus       277 vLekL~  282 (554)
T KOG2028|consen  277 VLEKLP  282 (554)
T ss_pred             EeccCC
Confidence            333333

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.54  E-value=2.6e-14  Score=123.11  Aligned_cols=143  Identities=25%  Similarity=0.302  Sum_probs=91.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      +.++||+++++.|..++..-             .-...+||+||+|+||||+|+.+|+.+++.                 
T Consensus        13 ~dliGQe~vv~~L~~a~~~~-------------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i   79 (491)
T PRK14964         13 KDLVGQDVLVRILRNAFTLN-------------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI   79 (491)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence            45699999999998765211             112368899999999999999999987542                 


Q ss_pred             -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                             ++.+++++     ..|   ...++.+...+....-.....|++|||++.+...             .+++|++
T Consensus        80 ~~~~~~Dv~eidaas-----~~~---vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~-------------A~NaLLK  138 (491)
T PRK14964         80 KNSNHPDVIEIDAAS-----NTS---VDDIKVILENSCYLPISSKFKVYIIDEVHMLSNS-------------AFNALLK  138 (491)
T ss_pred             hccCCCCEEEEeccc-----CCC---HHHHHHHHHHHHhccccCCceEEEEeChHhCCHH-------------HHHHHHH
Confidence                   23333321     111   1223344333322222346789999999999865             7899999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .||+-.             ..  +.+|.+++.       ...+.+.+++|+ ..+.|..++.+.
T Consensus       139 ~LEePp-------------~~--v~fIlatte-------~~Kl~~tI~SRc-~~~~f~~l~~~e  179 (491)
T PRK14964        139 TLEEPA-------------PH--VKFILATTE-------VKKIPVTIISRC-QRFDLQKIPTDK  179 (491)
T ss_pred             HHhCCC-------------CC--eEEEEEeCC-------hHHHHHHHHHhh-eeeecccccHHH
Confidence            999621             22  333333333       357999999986 336776666543

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=99.54  E-value=1.4e-14  Score=133.73  Aligned_cols=156  Identities=21%  Similarity=0.273  Sum_probs=102.1

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .++|+++.++++.+.+..              ....+++|+||||||||++++.++..+          +.+++.++.+.
T Consensus       174 ~~igr~~ei~~~~~~l~r--------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~  239 (852)
T TIGR03346       174 PVIGRDEEIRRTIQVLSR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA  239 (852)
T ss_pred             cCCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence            479999988888776511              234588999999999999999999876          56677777665


Q ss_pred             cc-ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          76 FT-EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        76 ~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                      +. ...|.|.- +..+..++....   ....+.||||||++.+...+...     ....+.+.|...+....        
T Consensus       240 l~a~~~~~g~~-e~~l~~~l~~~~---~~~~~~ILfIDEih~l~~~g~~~-----~~~d~~~~Lk~~l~~g~--------  302 (852)
T TIGR03346       240 LIAGAKYRGEF-EERLKAVLNEVT---KSEGQIILFIDELHTLVGAGKAE-----GAMDAGNMLKPALARGE--------  302 (852)
T ss_pred             HhhcchhhhhH-HHHHHHHHHHHH---hcCCCeEEEeccHHHhhcCCCCc-----chhHHHHHhchhhhcCc--------
Confidence            53 22466643 455666665431   11357899999999998653211     11235555655554321        


Q ss_pred             ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                               +.+|++|+..-.  ..+-.+|+++.|||.. |.++.|+.++
T Consensus       303 ---------i~~IgaTt~~e~--r~~~~~d~al~rRf~~-i~v~~p~~~~  340 (852)
T TIGR03346       303 ---------LHCIGATTLDEY--RKYIEKDAALERRFQP-VFVDEPTVED  340 (852)
T ss_pred             ---------eEEEEeCcHHHH--HHHhhcCHHHHhcCCE-EEeCCCCHHH
Confidence                     777887776100  0002479999999964 6777777655

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=99.54  E-value=3.3e-14  Score=117.90  Aligned_cols=166  Identities=19%  Similarity=0.241  Sum_probs=98.3

Q ss_pred             eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC---
Q psy5910           7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG---   80 (225)
Q Consensus         7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~---   80 (225)
                      ++|.+.+++.+.+.+..            +.....+|||+|++||||+++|++|+...   +.||+.++|..+.+..   
T Consensus         1 liG~S~~m~~~~~~~~~------------~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~   68 (329)
T TIGR02974         1 LIGESNAFLEVLEQVSR------------LAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDS   68 (329)
T ss_pred             CCcCCHHHHHHHHHHHH------------HhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHH
Confidence            46777777777665521            22344689999999999999999999877   4789999998764310   


Q ss_pred             -ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          81 -YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        81 -~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                       ..|.. ...+........+.+..+.+++|||||++.+...             +|..|+.+|+.....  ..++.....
T Consensus        69 ~lfG~~-~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~-------------~Q~~Ll~~l~~~~~~--~~g~~~~~~  132 (329)
T TIGR02974        69 ELFGHE-AGAFTGAQKRHQGRFERADGGTLFLDELATASLL-------------VQEKLLRVIEYGEFE--RVGGSQTLQ  132 (329)
T ss_pred             HHhccc-cccccCcccccCCchhhCCCCEEEeCChHhCCHH-------------HHHHHHHHHHcCcEE--ecCCCceec
Confidence             00110 0000000001123345568999999999999988             899999999864321  111111112


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLN  202 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~  202 (225)
                      .+  +.+|++|+.-.........+.+.+..||... |..|+-.+
T Consensus       133 ~~--~RiI~at~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLRe  174 (329)
T TIGR02974       133 VD--VRLVCATNADLPALAAEGRFRADLLDRLAFDVITLPPLRE  174 (329)
T ss_pred             cc--eEEEEechhhHHHHhhcCchHHHHHHHhcchhcCCCchhh
Confidence            22  7888888772100000112345566666443 55555443

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=99.53  E-value=3.3e-14  Score=123.31  Aligned_cols=151  Identities=24%  Similarity=0.319  Sum_probs=91.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe------------c
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV------------D   72 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~------------~   72 (225)
                      +.++||+++++.|..++...             .-...+||+||+|||||++|+.+|+.+++.....            +
T Consensus        21 ~dliGq~~vv~~L~~ai~~~-------------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~   87 (507)
T PRK06645         21 AELQGQEVLVKVLSYTILND-------------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTN   87 (507)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChH
Confidence            35699999999887765211             1124788999999999999999999997632110            0


Q ss_pred             cCcccc---cC---ccC--CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910          73 ATSFTE---AG---YVG--DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        73 ~~~~~~---~~---~~g--~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                      |..+..   ..   ..+  ......++.++..+..........|++|||++.+...             .++.|++.|++
T Consensus        88 C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~-------------a~naLLk~LEe  154 (507)
T PRK06645         88 CISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKG-------------AFNALLKTLEE  154 (507)
T ss_pred             HHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHH-------------HHHHHHHHHhh
Confidence            000000   00   000  0012233444444322222346689999999999765             78999999985


Q ss_pred             CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ..             ..  +++|.+++.       ...+++++++|+ ..+.|..++.++
T Consensus       155 pp-------------~~--~vfI~aTte-------~~kI~~tI~SRc-~~~ef~~ls~~e  191 (507)
T PRK06645        155 PP-------------PH--IIFIFATTE-------VQKIPATIISRC-QRYDLRRLSFEE  191 (507)
T ss_pred             cC-------------CC--EEEEEEeCC-------hHHhhHHHHhcc-eEEEccCCCHHH
Confidence            21             12  343333333       357899999987 346676666543

>PRK04195 replication factor C large subunit; Provisional

Probab=99.53  E-value=2.1e-14  Score=125.16  Aligned_cols=147  Identities=23%  Similarity=0.278  Sum_probs=95.3

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .++|++++++.|..++..+..+          .+.+++||+||||||||++|+++|+.++.+++.+++++...       
T Consensus        15 dlvg~~~~~~~l~~~l~~~~~g----------~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~-------   77 (482)
T PRK04195         15 DVVGNEKAKEQLREWIESWLKG----------KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT-------   77 (482)
T ss_pred             HhcCCHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc-------
Confidence            3799999999998877433211          12468999999999999999999999999999998876532       


Q ss_pred             HHHHHHHHHHhcch--hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          86 VESIIQKLLHECDY--DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        86 ~~~~~~~~~~~~~~--~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                       ...+.........  .+....+.+|+|||+|.+....+         ...++.|+..++...                 
T Consensus        78 -~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d---------~~~~~aL~~~l~~~~-----------------  130 (482)
T PRK04195         78 -ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED---------RGGARAILELIKKAK-----------------  130 (482)
T ss_pred             -HHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc---------hhHHHHHHHHHHcCC-----------------
Confidence             1122222222110  00012567999999999875321         125678888887421                 


Q ss_pred             eeEEecCcceeeccCccccHHH-HHHhhcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIEN-FIINRINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~-al~~Rf~~~i~~~~~~~~~  204 (225)
                      ..+|.++|.       +..++. .+++| ...|.|+.|+.++
T Consensus       131 ~~iIli~n~-------~~~~~~k~Lrsr-~~~I~f~~~~~~~  164 (482)
T PRK04195        131 QPIILTAND-------PYDPSLRELRNA-CLMIEFKRLSTRS  164 (482)
T ss_pred             CCEEEeccC-------ccccchhhHhcc-ceEEEecCCCHHH
Confidence            334445555       225555 55554 4458888887765

>TIGR00368 Mg chelatase-related protein

Probab=99.52  E-value=2.2e-14  Score=124.40  Aligned_cols=165  Identities=18%  Similarity=0.258  Sum_probs=99.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcccc----
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFTE----   78 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~----   78 (225)
                      +.|+||+.+++.+..++                ....+++|+||||||||++++.++..+...  -..+....+.+    
T Consensus       192 ~dv~Gq~~~~~al~~aa----------------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~  255 (499)
T TIGR00368       192 KDIKGQQHAKRALEIAA----------------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGK  255 (499)
T ss_pred             HHhcCcHHHHhhhhhhc----------------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhh
Confidence            34688888877776655                334578999999999999999999765210  01111111100    


Q ss_pred             ---------cCccC----CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          79 ---------AGYVG----DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        79 ---------~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                               ..|.-    ......+........+.+..+.++++||||++.+.+.             +++.|++.|+..
T Consensus       256 ~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~-------------~~~~L~~~LE~~  322 (499)
T TIGR00368       256 LIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELPEFKRS-------------VLDALREPIEDG  322 (499)
T ss_pred             hccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChhhCCHH-------------HHHHHHHHHHcC
Confidence                     00000    0000000000001123445678899999999998877             899999999876


Q ss_pred             CcCccccccccCCCCCCceeEEecCcce---e------eccCcc-------ccHHHHHHhhcccccccccc
Q psy5910         146 NLSITSLAEKKNPSQNPQVFNIDTTNIL---F------IAGGAF-------SGIENFIINRINQETNFLEK  200 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~---~------i~~~~~-------~~l~~al~~Rf~~~i~~~~~  200 (225)
                      ...+...+.......+  +.+|+++|.-   +      -|++++       ..+..++++|||..+..+.+
T Consensus       323 ~v~i~r~g~~~~~pa~--frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~  391 (499)
T TIGR00368       323 SISISRASAKIFYPAR--FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLL  391 (499)
T ss_pred             cEEEEecCcceeccCC--eEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCC
Confidence            5544443332222233  8999999963   1      133332       35889999999999766654

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.52  E-value=4.2e-14  Score=124.49  Aligned_cols=147  Identities=20%  Similarity=0.221  Sum_probs=90.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCe-------E------E
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPI-------I------V   70 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~-------~------~   70 (225)
                      +.|+||+++++.|...+..              ....| +||+||+|||||++|+.+|+.+++.-       -      .
T Consensus        13 ~eivGq~~i~~~L~~~i~~--------------~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~   78 (584)
T PRK14952         13 AEVVGQEHVTEPLSSALDA--------------GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA   78 (584)
T ss_pred             HHhcCcHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence            3568999999999887721              11235 57999999999999999999886521       0      0


Q ss_pred             ecc-----CcccccCccCCc--HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910          71 VDA-----TSFTEAGYVGDD--VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE  143 (225)
Q Consensus        71 ~~~-----~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~  143 (225)
                      ++.     .++..  +.+..  ....++.+..............|++|||++.+...             .+++|++.|+
T Consensus        79 i~~~~~~~~dvie--idaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALLK~LE  143 (584)
T PRK14952         79 LAPNGPGSIDVVE--LDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALLKIVE  143 (584)
T ss_pred             hhcccCCCceEEE--eccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHHHHHh
Confidence            000     00000  11110  01222333322221112346679999999999866             7999999999


Q ss_pred             cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                      +-.             .+  +++|.+++.       +..+.+.+++|. ..+.|..+..+
T Consensus       144 Epp-------------~~--~~fIL~tte-------~~kll~TI~SRc-~~~~F~~l~~~  180 (584)
T PRK14952        144 EPP-------------EH--LIFIFATTE-------PEKVLPTIRSRT-HHYPFRLLPPR  180 (584)
T ss_pred             cCC-------------CC--eEEEEEeCC-------hHhhHHHHHHhc-eEEEeeCCCHH
Confidence            622             22  444444433       358899999984 45777666554

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.52  E-value=4.2e-14  Score=123.48  Aligned_cols=143  Identities=23%  Similarity=0.312  Sum_probs=88.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      +.|+||+++++.|...+...             .....+||+||+|||||++|+.+|+.+++.                 
T Consensus        16 ~diiGq~~~v~~L~~~i~~~-------------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i   82 (546)
T PRK14957         16 AEVAGQQHALNSLVHALETQ-------------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI   82 (546)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence            34689999999988777211             011246799999999999999999988642                 


Q ss_pred             -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                             ++.+++.     ...|.   ..++.+..............|++|||+|++...             .++.|++
T Consensus        83 ~~~~~~dlieidaa-----s~~gv---d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~-------------a~naLLK  141 (546)
T PRK14957         83 NNNSFIDLIEIDAA-----SRTGV---EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQ-------------SFNALLK  141 (546)
T ss_pred             hcCCCCceEEeecc-----cccCH---HHHHHHHHHHHhhhhcCCcEEEEEechhhccHH-------------HHHHHHH
Confidence                   1111111     01111   112333333221112345679999999999866             7999999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .||+..             .. ..+++.|++.        ..+.+.+++|+ ..+.|..++.+.
T Consensus       142 ~LEepp-------------~~-v~fIL~Ttd~--------~kil~tI~SRc-~~~~f~~Ls~~e  182 (546)
T PRK14957        142 TLEEPP-------------EY-VKFILATTDY--------HKIPVTILSRC-IQLHLKHISQAD  182 (546)
T ss_pred             HHhcCC-------------CC-ceEEEEECCh--------hhhhhhHHHhe-eeEEeCCCCHHH
Confidence            999631             11 0344444443        46777888886 446676665543

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=99.52  E-value=6.1e-14  Score=122.83  Aligned_cols=142  Identities=32%  Similarity=0.393  Sum_probs=91.0

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC------------------
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP------------------   67 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~------------------   67 (225)
                      .++||+.+++.+..++...             .....+||+||+|||||++|+.+|+.+.+.                  
T Consensus        17 dIIGQe~iv~~L~~aI~~~-------------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~   83 (605)
T PRK05896         17 QIIGQELIKKILVNAILNN-------------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN   83 (605)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence            4689999999998866211             111358899999999999999999998542                  


Q ss_pred             ------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910          68 ------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL  141 (225)
Q Consensus        68 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~  141 (225)
                            ++.+++..     ..|   ...++.+..............|++|||++.+...             .+++|+..
T Consensus        84 ~~~h~DiieIdaas-----~ig---Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKt  142 (605)
T PRK05896         84 TNQSVDIVELDAAS-----NNG---VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKT  142 (605)
T ss_pred             cCCCCceEEecccc-----ccC---HHHHHHHHHHHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHH
Confidence                  11111110     011   1123334333221112235679999999999755             78999999


Q ss_pred             HhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       142 l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      |++.             ...  .++|.+++.       +..+.+++++|+. .+.|..++.+.
T Consensus       143 LEEP-------------p~~--tvfIL~Tt~-------~~KLl~TI~SRcq-~ieF~~Ls~~e  182 (605)
T PRK05896        143 LEEP-------------PKH--VVFIFATTE-------FQKIPLTIISRCQ-RYNFKKLNNSE  182 (605)
T ss_pred             HHhC-------------CCc--EEEEEECCC-------hHhhhHHHHhhhh-hcccCCCCHHH
Confidence            9962             222  444444443       4689999999964 57887776654

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=99.52  E-value=9.2e-14  Score=101.32  Aligned_cols=145  Identities=26%  Similarity=0.387  Sum_probs=88.3

Q ss_pred             chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCc
Q psy5910           9 GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         9 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      |++.++..+...+..              ...++++++||||||||++++.+++.+   +.+++.+++...... ...  
T Consensus         2 ~~~~~~~~i~~~~~~--------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~-~~~--   64 (151)
T cd00009           2 GQEEAIEALREALEL--------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEG-LVV--   64 (151)
T ss_pred             chHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhh-hHH--
Confidence            566667777665511              124578899999999999999999998   788888888665321 110  


Q ss_pred             HHHHHHH-HHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          86 VESIIQK-LLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                       ...... .............+.++++||++.+...             ....++..++......       .....  +
T Consensus        65 -~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~-------------~~~~~~~~i~~~~~~~-------~~~~~--~  121 (151)
T cd00009          65 -AELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRG-------------AQNALLRVLETLNDLR-------IDREN--V  121 (151)
T ss_pred             -HHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHH-------------HHHHHHHHHHhcCcee-------ccCCC--e
Confidence             100000 0000001112346799999999998544             4567777776532110       00112  6


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFL  198 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~  198 (225)
                      .+|.++|....     ..+++.+.+||+..+.++
T Consensus       122 ~ii~~~~~~~~-----~~~~~~~~~r~~~~i~~~  150 (151)
T cd00009         122 RVIGATNRPLL-----GDLDRALYDRLDIRIVIP  150 (151)
T ss_pred             EEEEecCcccc-----CCcChhHHhhhccEeecC
Confidence            67777766211     267888999998666654

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=99.52  E-value=4.6e-14  Score=116.81  Aligned_cols=143  Identities=21%  Similarity=0.229  Sum_probs=93.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g   83 (225)
                      +.++|++++++.+...+..              ...++++ ++||||+|||++|+++++.++.++..+++.. .  ..  
T Consensus        21 ~~~~~~~~~~~~l~~~~~~--------------~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~--~~--   81 (316)
T PHA02544         21 DECILPAADKETFKSIVKK--------------GRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C--RI--   81 (316)
T ss_pred             HHhcCcHHHHHHHHHHHhc--------------CCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c--cH--
Confidence            3468999999988877621              1112444 6999999999999999999988888888865 1  10  


Q ss_pred             CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      ......+........   ....+.+++|||+|.+...            ..++.|...++...             .+  
T Consensus        82 ~~i~~~l~~~~~~~~---~~~~~~vliiDe~d~l~~~------------~~~~~L~~~le~~~-------------~~--  131 (316)
T PHA02544         82 DFVRNRLTRFASTVS---LTGGGKVIIIDEFDRLGLA------------DAQRHLRSFMEAYS-------------KN--  131 (316)
T ss_pred             HHHHHHHHHHHHhhc---ccCCCeEEEEECcccccCH------------HHHHHHHHHHHhcC-------------CC--
Confidence            011111211111110   1135789999999988432            15677888887532             11  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ..+|.++|.       ...+++++++||. .+.|+.|+.+.
T Consensus       132 ~~~Ilt~n~-------~~~l~~~l~sR~~-~i~~~~p~~~~  164 (316)
T PHA02544        132 CSFIITANN-------KNGIIEPLRSRCR-VIDFGVPTKEE  164 (316)
T ss_pred             ceEEEEcCC-------hhhchHHHHhhce-EEEeCCCCHHH
Confidence            556667766       5688999999984 47777776553

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.51  E-value=4.3e-14  Score=123.85  Aligned_cols=149  Identities=21%  Similarity=0.265  Sum_probs=89.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeEE--eccC-------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPIIV--VDAT-------   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~~-------   74 (225)
                      +.|+||+++++.|..++...              ...+ +||+||+|||||++|+.+|+.+++....  -.|+       
T Consensus        16 ~divGq~~v~~~L~~~i~~~--------------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~   81 (527)
T PRK14969         16 SELVGQEHVVRALTNALEQQ--------------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLE   81 (527)
T ss_pred             HHhcCcHHHHHHHHHHHHcC--------------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            35689999999998876211              1124 6799999999999999999999663110  0110       


Q ss_pred             -------ccccc-CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910          75 -------SFTEA-GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN  146 (225)
Q Consensus        75 -------~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~  146 (225)
                             ++... .-.... ...++.+...+..........|++|||+|.+...             .++.|++.|++..
T Consensus        82 i~~~~~~d~~ei~~~~~~~-vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~-------------a~naLLK~LEepp  147 (527)
T PRK14969         82 IDSGRFVDLIEVDAASNTQ-VDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKS-------------AFNAMLKTLEEPP  147 (527)
T ss_pred             HhcCCCCceeEeeccccCC-HHHHHHHHHHHhhCcccCCceEEEEcCcccCCHH-------------HHHHHHHHHhCCC
Confidence                   00000 000011 1223444433322112335679999999999866             7899999998621


Q ss_pred             cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                   ..  +.+|.+|+.       +..+.+.+++|+ ..+.|..++.+.
T Consensus       148 -------------~~--~~fIL~t~d-------~~kil~tI~SRc-~~~~f~~l~~~~  182 (527)
T PRK14969        148 -------------EH--VKFILATTD-------PQKIPVTVLSRC-LQFNLKQMPPPL  182 (527)
T ss_pred             -------------CC--EEEEEEeCC-------hhhCchhHHHHH-HHHhcCCCCHHH
Confidence                         22  333333332       346777788885 447777776653

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.51  E-value=6.9e-14  Score=123.03  Aligned_cols=142  Identities=22%  Similarity=0.293  Sum_probs=90.1

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC------------------
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP------------------   67 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~------------------   67 (225)
                      .|+||+++++.|..++...             .-...+||+||+|||||++|+.+|+.+.+.                  
T Consensus        17 dIiGQe~v~~~L~~ai~~~-------------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~   83 (624)
T PRK14959         17 EVAGQETVKAILSRAAQEN-------------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT   83 (624)
T ss_pred             HhcCCHHHHHHHHHHHHcC-------------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence            4589999999998877211             012368899999999999999999999653                  


Q ss_pred             ------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910          68 ------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL  141 (225)
Q Consensus        68 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~  141 (225)
                            ++.+++..     ..+  + ..++.+.+............|++|||++.+...             .++.|++.
T Consensus        84 ~g~hpDv~eId~a~-----~~~--I-d~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~-------------a~naLLk~  142 (624)
T PRK14959         84 QGMHVDVVEIDGAS-----NRG--I-DDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTRE-------------AFNALLKT  142 (624)
T ss_pred             cCCCCceEEEeccc-----ccC--H-HHHHHHHHHHHhhhhcCCceEEEEEChHhCCHH-------------HHHHHHHH
Confidence                  22222110     011  1 112222222111112235679999999999866             78999999


Q ss_pred             HhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       142 l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      |++..             .+  +++|.+++.       ...+.+.+++|+. .+.|..++.++
T Consensus       143 LEEP~-------------~~--~ifILaTt~-------~~kll~TI~SRcq-~i~F~pLs~~e  182 (624)
T PRK14959        143 LEEPP-------------AR--VTFVLATTE-------PHKFPVTIVSRCQ-HFTFTRLSEAG  182 (624)
T ss_pred             hhccC-------------CC--EEEEEecCC-------hhhhhHHHHhhhh-ccccCCCCHHH
Confidence            98621             12  444444444       4578888999863 47787776654

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=99.51  E-value=6e-14  Score=127.83  Aligned_cols=147  Identities=21%  Similarity=0.208  Sum_probs=88.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeEE--eccC-------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPIIV--VDAT-------   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~~-------   74 (225)
                      +.|+||+++++.|...+..              ....| +||+||+|||||++|+.+++.+++.-..  -.|.       
T Consensus        15 ~eiiGqe~v~~~L~~~i~~--------------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~   80 (824)
T PRK07764         15 AEVIGQEHVTEPLSTALDS--------------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVA   80 (824)
T ss_pred             HHhcCcHHHHHHHHHHHHh--------------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHH
Confidence            3568999999999887721              11134 6899999999999999999999752100  0000       


Q ss_pred             ---------cccccCccCCc--HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910          75 ---------SFTEAGYVGDD--VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE  143 (225)
Q Consensus        75 ---------~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~  143 (225)
                               ++..  +.+..  ....++.+..............|+||||+|.|...             .++.|++.||
T Consensus        81 ~~~g~~~~~dv~e--idaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~-------------a~NaLLK~LE  145 (824)
T PRK07764         81 LAPGGPGSLDVTE--IDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQ-------------GFNALLKIVE  145 (824)
T ss_pred             HHcCCCCCCcEEE--ecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHH-------------HHHHHHHHHh
Confidence                     0100  11100  01122333222211112346679999999999976             7999999999


Q ss_pred             cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                      +..             .+  +++|.+++.       .+.|.+.|++|+ ..+.|..+..+
T Consensus       146 EpP-------------~~--~~fIl~tt~-------~~kLl~TIrSRc-~~v~F~~l~~~  182 (824)
T PRK07764        146 EPP-------------EH--LKFIFATTE-------PDKVIGTIRSRT-HHYPFRLVPPE  182 (824)
T ss_pred             CCC-------------CC--eEEEEEeCC-------hhhhhHHHHhhe-eEEEeeCCCHH
Confidence            632             22  344433333       356888899985 33566555443

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=99.50  E-value=5.9e-14  Score=124.20  Aligned_cols=149  Identities=20%  Similarity=0.229  Sum_probs=89.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE--eccC--------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV--VDAT--------   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~~--------   74 (225)
                      +.|+||+++++.|..++...             .-...+||+||+|||||++|+.+++.+++.-..  ..|.        
T Consensus        16 ddIIGQe~vv~~L~~ai~~~-------------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i   82 (709)
T PRK08691         16 ADLVGQEHVVKALQNALDEG-------------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI   82 (709)
T ss_pred             HHHcCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence            45799999999998877211             111357899999999999999999998653110  0010        


Q ss_pred             ------cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          75 ------SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        75 ------~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                            ++.. ....... ...++.++.............|++|||++.+...             .++.|++.|+... 
T Consensus        83 ~~g~~~DvlEidaAs~~g-Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~-------------A~NALLKtLEEPp-  147 (709)
T PRK08691         83 DAGRYVDLLEIDAASNTG-IDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKS-------------AFNAMLKTLEEPP-  147 (709)
T ss_pred             hccCccceEEEeccccCC-HHHHHHHHHHHHhhhhhCCcEEEEEECccccCHH-------------HHHHHHHHHHhCC-
Confidence                  0000 0000111 1234444443322212235679999999998755             6899999998621 


Q ss_pred             CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                                  ..  +.+|.+++.       ...+...+++|+ ..+.|..+..+
T Consensus       148 ------------~~--v~fILaTtd-------~~kL~~TIrSRC-~~f~f~~Ls~e  181 (709)
T PRK08691        148 ------------EH--VKFILATTD-------PHKVPVTVLSRC-LQFVLRNMTAQ  181 (709)
T ss_pred             ------------CC--cEEEEEeCC-------ccccchHHHHHH-hhhhcCCCCHH
Confidence                        22  444444444       447888888886 33555555554

>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional

Probab=99.50  E-value=5.2e-14  Score=122.92  Aligned_cols=137  Identities=20%  Similarity=0.308  Sum_probs=89.5

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHH-----------hCCCeEEeccC
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKI-----------INVPIIVVDAT   74 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~-----------~~~~~~~~~~~   74 (225)
                      .++|++.+++.+.+.+.            .+.....+|||+|++||||+++|++|++.           .+.||+.+||.
T Consensus       220 ~iiG~S~~m~~~~~~i~------------~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCa  287 (538)
T PRK15424        220 DLLGQSPQMEQVRQTIL------------LYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCG  287 (538)
T ss_pred             heeeCCHHHHHHHHHHH------------HHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecc
Confidence            47899888888877662            12234468999999999999999999987           36799999998


Q ss_pred             cccccC----ccCCcHHHHHHHHHH-hcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCc
Q psy5910          75 SFTEAG----YVGDDVESIIQKLLH-ECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI  149 (225)
Q Consensus        75 ~~~~~~----~~g~~~~~~~~~~~~-~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~  149 (225)
                      .+.+..    ..|.. ...+....+ ...+.+..+.+++|||||++.+...             +|..|+++|+..... 
T Consensus       288 al~e~lleseLFG~~-~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~-------------~Q~kLl~~L~e~~~~-  352 (538)
T PRK15424        288 AIAESLLEAELFGYE-EGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLP-------------LQTRLLRVLEEKEVT-  352 (538)
T ss_pred             cCChhhHHHHhcCCc-cccccCccccccCCchhccCCCEEEEcChHhCCHH-------------HHHHHHhhhhcCeEE-
Confidence            874311    11111 000000000 0113344568899999999999988             899999999864322 


Q ss_pred             cccccccCCCCCCceeEEecCcc
Q psy5910         150 TSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       150 ~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                       ..++...-..+  +.+|++||.
T Consensus       353 -r~G~~~~~~~d--vRiIaat~~  372 (538)
T PRK15424        353 -RVGGHQPVPVD--VRVISATHC  372 (538)
T ss_pred             -ecCCCceeccc--eEEEEecCC
Confidence             11111111122  788888887

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.50  E-value=5.8e-14  Score=122.17  Aligned_cols=141  Identities=21%  Similarity=0.287  Sum_probs=88.9

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcE-EEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNI-LLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v-Ll~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      .|+||+++++.|...+..              ....+. ||+|||||||||+|+++++.+.+.                 
T Consensus        15 dvvGq~~v~~~L~~~i~~--------------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~   80 (504)
T PRK14963         15 EVVGQEHVKEVLLAALRQ--------------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVR   80 (504)
T ss_pred             HhcChHHHHHHHHHHHHc--------------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHh
Confidence            469999999999887622              112344 899999999999999999988541                 


Q ss_pred             ------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910          68 ------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL  141 (225)
Q Consensus        68 ------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~  141 (225)
                            ++.+++..     ..  . ...++.+..............|++|||++.+...             .++.|++.
T Consensus        81 ~~~h~dv~el~~~~-----~~--~-vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~-------------a~naLLk~  139 (504)
T PRK14963         81 RGAHPDVLEIDAAS-----NN--S-VEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKS-------------AFNALLKT  139 (504)
T ss_pred             cCCCCceEEecccc-----cC--C-HHHHHHHHHHHhhccccCCCeEEEEECccccCHH-------------HHHHHHHH
Confidence                  22222211     01  1 1223333222211111235679999999988654             78999999


Q ss_pred             HhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       142 l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      |+...             ..  +++|.+++.       +..+.+.+++|+. .+.|..++.+.
T Consensus       140 LEep~-------------~~--t~~Il~t~~-------~~kl~~~I~SRc~-~~~f~~ls~~e  179 (504)
T PRK14963        140 LEEPP-------------EH--VIFILATTE-------PEKMPPTILSRTQ-HFRFRRLTEEE  179 (504)
T ss_pred             HHhCC-------------CC--EEEEEEcCC-------hhhCChHHhcceE-EEEecCCCHHH
Confidence            98521             12  444444444       4578889998864 47777766654

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=99.50  E-value=8.2e-14  Score=115.56  Aligned_cols=171  Identities=19%  Similarity=0.241  Sum_probs=101.9

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~   78 (225)
                      +..+.++|.+...+.+.+.+..            +.....+|||+|++||||+++|++|+...   +.||+.++|..+.+
T Consensus         3 ~~~~~liG~S~~~~~~~~~i~~------------~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~   70 (326)
T PRK11608          3 EYKDNLLGEANSFLEVLEQVSR------------LAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE   70 (326)
T ss_pred             cccCccEECCHHHHHHHHHHHH------------HhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH
Confidence            3456789999888888776622            22344689999999999999999999876   46899999987642


Q ss_pred             c----CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          79 A----GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        79 ~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                      .    .+.|.... ..........+.+....+++|||||++.+...             +|..|+.+|+.....  ..++
T Consensus        71 ~~~~~~lfg~~~~-~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~--~~g~  134 (326)
T PRK11608         71 NLLDSELFGHEAG-AFTGAQKRHPGRFERADGGTLFLDELATAPML-------------VQEKLLRVIEYGELE--RVGG  134 (326)
T ss_pred             HHHHHHHcccccc-ccCCcccccCCchhccCCCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEE--eCCC
Confidence            1    01111100 00000000112345568899999999999988             899999999864321  1111


Q ss_pred             ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccc
Q psy5910         155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLN  202 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~  202 (225)
                      ......+  +.+|++|+.-.........+.+.+..||... |..|+-.+
T Consensus       135 ~~~~~~~--~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLRe  181 (326)
T PRK11608        135 SQPLQVN--VRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRE  181 (326)
T ss_pred             Cceeecc--EEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhh
Confidence            1111112  7777777762210000112445566666433 55554433

>PRK09862 putative ATP-dependent protease; Provisional

Probab=99.49  E-value=5.8e-14  Score=121.43  Aligned_cols=147  Identities=13%  Similarity=0.221  Sum_probs=90.2

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCC--eEEeccCccc-------------ccCcc----CCcHHHHHHHHHHhcchh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFT-------------EAGYV----GDDVESIIQKLLHECDYD  100 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~-------------~~~~~----g~~~~~~~~~~~~~~~~~  100 (225)
                      ..+++|+||||||||++++.++..+...  -..+....+.             ..-|.    ..+....+..-.....+.
T Consensus       210 G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~  289 (506)
T PRK09862        210 GHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGE  289 (506)
T ss_pred             CcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhhH
Confidence            3467799999999999999999876311  0011111110             00011    000011111000011245


Q ss_pred             hhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCccee------
Q psy5910         101 VELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILF------  174 (225)
Q Consensus       101 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~------  174 (225)
                      +..+.++++|+||++.+.+.             +++.|++.|+.....+...+.......+  +.+|+|+|..-      
T Consensus       290 l~~A~gGvLfLDEi~e~~~~-------------~~~~L~~~LE~g~v~I~r~g~~~~~pa~--f~lIAa~NP~pcG~~~~  354 (506)
T PRK09862        290 ISLAHNGVLFLDELPEFERR-------------TLDALREPIESGQIHLSRTRAKITYPAR--FQLVAAMNPSPTGHYQG  354 (506)
T ss_pred             hhhccCCEEecCCchhCCHH-------------HHHHHHHHHHcCcEEEecCCcceeccCC--EEEEEeecCccceecCC
Confidence            66778999999999998876             8999999998876655554443322233  99999999842      


Q ss_pred             -eccCcc-------ccHHHHHHhhccccccccccc
Q psy5910         175 -IAGGAF-------SGIENFIINRINQETNFLEKL  201 (225)
Q Consensus       175 -i~~~~~-------~~l~~al~~Rf~~~i~~~~~~  201 (225)
                       -|.|++       ..++.++++|||..+..+.++
T Consensus       355 ~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~  389 (506)
T PRK09862        355 NHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP  389 (506)
T ss_pred             CCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence             133333       358889999999987666654

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=99.49  E-value=9.7e-14  Score=123.79  Aligned_cols=151  Identities=22%  Similarity=0.249  Sum_probs=93.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe---ccCccc----
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV---DATSFT----   77 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~---~~~~~~----   77 (225)
                      +.|+||+++++.|..++...             .-...+||+||+|||||++|+.+|+.+.+.-...   .|....    
T Consensus        18 ~dIiGQe~~v~~L~~aI~~~-------------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~   84 (725)
T PRK07133         18 DDIVGQDHIVQTLKNIIKSN-------------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVN   84 (725)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhc
Confidence            35689999999998877211             1112468999999999999999999986632110   010000    


Q ss_pred             -ccC-c--cCC--cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccc
Q psy5910          78 -EAG-Y--VGD--DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS  151 (225)
Q Consensus        78 -~~~-~--~g~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~  151 (225)
                       ... +  .+.  .....++.+..............|++|||++.+...             .+++|++.|++.      
T Consensus        85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~-------------A~NALLKtLEEP------  145 (725)
T PRK07133         85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKS-------------AFNALLKTLEEP------  145 (725)
T ss_pred             CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHH-------------HHHHHHHHhhcC------
Confidence             000 0  110  001223444443322222346679999999999866             789999999962      


Q ss_pred             cccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         152 LAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                             ...  +++|.+++.       +..+++.+++|+. .+.|..++.+.
T Consensus       146 -------P~~--tifILaTte-------~~KLl~TI~SRcq-~ieF~~L~~ee  181 (725)
T PRK07133        146 -------PKH--VIFILATTE-------VHKIPLTILSRVQ-RFNFRRISEDE  181 (725)
T ss_pred             -------CCc--eEEEEEcCC-------hhhhhHHHHhhce-eEEccCCCHHH
Confidence                   222  444444433       4689999999974 57787776654

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.49  E-value=8.7e-14  Score=122.96  Aligned_cols=141  Identities=20%  Similarity=0.268  Sum_probs=86.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVP----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~----------------   67 (225)
                      +.|+||+++++.|...+...              ...+ +||+||+|||||++|+.+|+.+++.                
T Consensus        16 ~dviGQe~vv~~L~~~l~~~--------------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C   81 (618)
T PRK14951         16 SEMVGQEHVVQALTNALTQQ--------------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVC   81 (618)
T ss_pred             HHhcCcHHHHHHHHHHHHcC--------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCcc
Confidence            34579999999998877211              1124 5799999999999999999998752                


Q ss_pred             -------------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHH
Q psy5910          68 -------------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGV  134 (225)
Q Consensus        68 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~  134 (225)
                                   ++.+++..     -.  . ...++.+..............|++|||+|.+...             .
T Consensus        82 ~~C~~i~~g~h~D~~eldaas-----~~--~-Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-------------a  140 (618)
T PRK14951         82 QACRDIDSGRFVDYTELDAAS-----NR--G-VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-------------A  140 (618)
T ss_pred             HHHHHHHcCCCCceeecCccc-----cc--C-HHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-------------H
Confidence                         11111110     01  1 1123334333211112234579999999999976             7


Q ss_pred             HHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         135 QQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       135 ~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                      ++.|++.||+..             ..  +.+|.+|+.       +..+...+++|+ ..+.|...+.+
T Consensus       141 ~NaLLKtLEEPP-------------~~--~~fIL~Ttd-------~~kil~TIlSRc-~~~~f~~Ls~e  186 (618)
T PRK14951        141 FNAMLKTLEEPP-------------EY--LKFVLATTD-------PQKVPVTVLSRC-LQFNLRPMAPE  186 (618)
T ss_pred             HHHHHHhcccCC-------------CC--eEEEEEECC-------chhhhHHHHHhc-eeeecCCCCHH
Confidence            899999998621             12  333333322       346788899885 44666655554

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.49  E-value=1e-13  Score=122.82  Aligned_cols=148  Identities=22%  Similarity=0.223  Sum_probs=90.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE--ecc---------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV--VDA---------   73 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~---------   73 (225)
                      +.|+||+++++.|...+..-             .-...+||+||+|||||++|+.+++.+++.-..  -.|         
T Consensus        16 ~~iiGq~~v~~~L~~~i~~~-------------~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i   82 (576)
T PRK14965         16 SDLTGQEHVSRTLQNAIDTG-------------RVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI   82 (576)
T ss_pred             HHccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence            45699999999998876211             011246899999999999999999998653100  000         


Q ss_pred             -----CcccccCccCCc--HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910          74 -----TSFTEAGYVGDD--VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN  146 (225)
Q Consensus        74 -----~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~  146 (225)
                           .++..  +.|.+  ....++.+..............|++|||+|.+...             .+++|++.||+. 
T Consensus        83 ~~g~~~d~~e--id~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~naLLk~LEep-  146 (576)
T PRK14965         83 TEGRSVDVFE--IDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AFNALLKTLEEP-  146 (576)
T ss_pred             hcCCCCCeee--eeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HHHHHHHHHHcC-
Confidence                 00100  11110  01123333333221112245679999999999866             789999999962 


Q ss_pred             cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                                  ..+  +.+|.+|+.       +..|.+.+++|+ ..+.|..++.+
T Consensus       147 ------------p~~--~~fIl~t~~-------~~kl~~tI~SRc-~~~~f~~l~~~  181 (576)
T PRK14965        147 ------------PPH--VKFIFATTE-------PHKVPITILSRC-QRFDFRRIPLQ  181 (576)
T ss_pred             ------------CCC--eEEEEEeCC-------hhhhhHHHHHhh-hhhhcCCCCHH
Confidence                        122  444444443       468999999986 34777666554

>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]

Probab=99.49  E-value=1.5e-13  Score=114.09  Aligned_cols=165  Identities=17%  Similarity=0.218  Sum_probs=107.3

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc-------
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS-------   75 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~-------   75 (225)
                      +...++||+..+..|....              +...-+++||-|+.||||||++|+|+..+.---....|..       
T Consensus        15 pf~aivGqd~lk~aL~l~a--------------v~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P   80 (423)
T COG1239          15 PFTAIVGQDPLKLALGLNA--------------VDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDP   80 (423)
T ss_pred             chhhhcCchHHHHHHhhhh--------------cccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCCh
Confidence            3456899999998886543              1133469999999999999999999999832211111100       


Q ss_pred             -------------------------------ccc-cCccCC-cHHHHHHHHHHh-cchhhhhhCCCEEEEcchhhhcccc
Q psy5910          76 -------------------------------FTE-AGYVGD-DVESIIQKLLHE-CDYDVELAEQSIIYIDEIDKISKKT  121 (225)
Q Consensus        76 -------------------------------~~~-~~~~g~-~~~~~~~~~~~~-~~~~~~~~~~~vl~iDEid~l~~~~  121 (225)
                                                     ... ....|. ++.+.++.-.+. ..+.+.++.++|+|+||++.+..+ 
T Consensus        81 ~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~-  159 (423)
T COG1239          81 EEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDH-  159 (423)
T ss_pred             hhhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHH-
Confidence                                           000 002222 233333321111 136677889999999999999977 


Q ss_pred             cccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910         122 DVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL  201 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~  201 (225)
                                  +++.|++.++.+...+...+......-+  |++|+|+|.-      ..+|-+.|++||...+....|.
T Consensus       160 ------------lvd~LLd~aaeG~n~vereGisi~hpa~--fvligTmNPE------eGeLrpqLlDRfg~~v~~~~~~  219 (423)
T COG1239         160 ------------LVDALLDVAAEGVNDVEREGISIRHPAR--FLLIGTMNPE------EGELRPQLLDRFGLEVDTHYPL  219 (423)
T ss_pred             ------------HHHHHHHHHHhCCceeeeCceeeccCcc--EEEEeecCcc------ccccchhhHhhhcceeeccCCC
Confidence                        9999999998764444444433322233  8999999981      2469999999999985544444


Q ss_pred             c
Q psy5910         202 N  202 (225)
Q Consensus       202 ~  202 (225)
                      .
T Consensus       220 ~  220 (423)
T COG1239         220 D  220 (423)
T ss_pred             C
Confidence            4

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=99.49  E-value=9.1e-14  Score=108.53  Aligned_cols=153  Identities=20%  Similarity=0.304  Sum_probs=107.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGY   81 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~   81 (225)
                      +.++|.+.+++.|.+....+..+          .+..++||+|+.|||||++++++.+.+   |..++.+...++..   
T Consensus        27 ~~L~Gie~Qk~~l~~Nt~~Fl~G----------~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---   93 (249)
T PF05673_consen   27 DDLIGIERQKEALIENTEQFLQG----------LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---   93 (249)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcC----------CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---
Confidence            35699999999999888666554          355699999999999999999999877   67788887766642   


Q ss_pred             cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910          82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                          ....+..+-       .....-|||+|++.  +...          +.-...|..+||+.-..         ...|
T Consensus        94 ----l~~l~~~l~-------~~~~kFIlf~DDLs--Fe~~----------d~~yk~LKs~LeGgle~---------~P~N  141 (249)
T PF05673_consen   94 ----LPELLDLLR-------DRPYKFILFCDDLS--FEEG----------DTEYKALKSVLEGGLEA---------RPDN  141 (249)
T ss_pred             ----HHHHHHHHh-------cCCCCEEEEecCCC--CCCC----------cHHHHHHHHHhcCcccc---------CCCc
Confidence                233333321       12357799999843  2221          22467888899975433         2344


Q ss_pred             CceeEEecCcceeeccCcc--------------ccHHH--HHHhhcccccccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAF--------------SGIEN--FIINRINQETNFLEKLNNN  204 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~--------------~~l~~--al~~Rf~~~i~~~~~~~~~  204 (225)
                        +++.+|||+--+.....              +.+++  ++-+||...|.|..|+.+.
T Consensus       142 --vliyATSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~  198 (249)
T PF05673_consen  142 --VLIYATSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEE  198 (249)
T ss_pred             --EEEEEecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHH
Confidence              99999999976554321              12232  4566999999999999987

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=99.48  E-value=1.2e-13  Score=121.86  Aligned_cols=143  Identities=25%  Similarity=0.328  Sum_probs=91.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      +.++||+++++.|..++...             .....+||+||+|||||++|+.+|+.+++.                 
T Consensus        16 ~~viGq~~v~~~L~~~i~~~-------------~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i   82 (559)
T PRK05563         16 EDVVGQEHITKTLKNAIKQG-------------KISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI   82 (559)
T ss_pred             HhccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence            45799999999998877321             111246799999999999999999988643                 


Q ss_pred             -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                             ++.+++..       +.. ...++.+..............|++|||++.+...             .+++|++
T Consensus        83 ~~g~~~dv~eidaas-------~~~-vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-------------a~naLLK  141 (559)
T PRK05563         83 TNGSLMDVIEIDAAS-------NNG-VDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-------------AFNALLK  141 (559)
T ss_pred             hcCCCCCeEEeeccc-------cCC-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHH
Confidence                   12222110       011 1223444443322222346779999999999755             7899999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .|++.             ...  +++|.+++.       +..+++.+++|+. .+.|..++.++
T Consensus       142 tLEep-------------p~~--~ifIlatt~-------~~ki~~tI~SRc~-~~~f~~~~~~e  182 (559)
T PRK05563        142 TLEEP-------------PAH--VIFILATTE-------PHKIPATILSRCQ-RFDFKRISVED  182 (559)
T ss_pred             HhcCC-------------CCC--eEEEEEeCC-------hhhCcHHHHhHhe-EEecCCCCHHH
Confidence            99862             122  333333333       4578999999964 46777766543

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=99.48  E-value=9.3e-14  Score=125.17  Aligned_cols=138  Identities=19%  Similarity=0.336  Sum_probs=89.8

Q ss_pred             eeechhhHHh---hheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           6 HIIGQHETKK---IVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         6 ~i~G~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      .++||++.+.   .+.+.+..              ....+++|+||||||||++|+++++..+.+++.+++....   . 
T Consensus        29 d~vGQe~ii~~~~~L~~~i~~--------------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~---i-   90 (725)
T PRK13341         29 EFVGQDHILGEGRLLRRAIKA--------------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG---V-   90 (725)
T ss_pred             HhcCcHHHhhhhHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh---h-
Confidence            3579988874   44444410              1224899999999999999999999999888888764321   0 


Q ss_pred             CCcHHHHHHHHHHhcchhhh-hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVE-LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                       .+    ++..+..+..... .....++||||+|.+...             .|+.|+..++...               
T Consensus        91 -~d----ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~-------------qQdaLL~~lE~g~---------------  137 (725)
T PRK13341         91 -KD----LRAEVDRAKERLERHGKRTILFIDEVHRFNKA-------------QQDALLPWVENGT---------------  137 (725)
T ss_pred             -HH----HHHHHHHHHHHhhhcCCceEEEEeChhhCCHH-------------HHHHHHHHhcCce---------------
Confidence             11    1222221110011 124679999999998865             6888998887522               


Q ss_pred             CceeEEecC--cceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         162 PQVFNIDTT--NILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       162 ~~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                        +++|++|  |.       ...+++++++|. ..+.|+.++.+.
T Consensus       138 --IiLI~aTTenp-------~~~l~~aL~SR~-~v~~l~pLs~ed  172 (725)
T PRK13341        138 --ITLIGATTENP-------YFEVNKALVSRS-RLFRLKSLSDED  172 (725)
T ss_pred             --EEEEEecCCCh-------HhhhhhHhhccc-cceecCCCCHHH
Confidence              5555443  33       346889999985 347777777654

>PTZ00111 DNA replication licensing factor MCM4; Provisional

Probab=99.46  E-value=6.1e-14  Score=126.88  Aligned_cols=180  Identities=15%  Similarity=0.092  Sum_probs=107.0

Q ss_pred             cceeechhhHHhhheeeeEecccceEee-------cc----cceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLL-------KS----KNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~-------~~----~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .-.|+|++.+|+.|.-.+   +++.+..       ++    ..+ ....+|||+|+||||||++|+.+++...... +.+
T Consensus       449 aP~I~G~e~vK~ailL~L---~gG~~k~~~~~~~~dg~~~~~~i-RgdihVLLvGDPGTGKSqLAr~Ih~lspR~~-yts  523 (915)
T PTZ00111        449 APSIKARNNVKIGLLCQL---FSGNKNSSDFNKSPDACYKVDNF-RGIINVLLCGDPGTAKSQLLHYTHLLSPRSI-YTS  523 (915)
T ss_pred             CCeEECCHHHHHHHHHHH---hcCCccccccccccccccccccc-cCCceEEEeCCCCccHHHHHHHHHHhCCccc-cCC
Confidence            456899999998885544   2222110       00    111 2234899999999999999999999764321 111


Q ss_pred             cCcccccCccCCcH-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccc
Q psy5910          73 ATSFTEAGYVGDDV-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS  151 (225)
Q Consensus        73 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~  151 (225)
                      +......+..+... .......+....|.+..+.+++++|||++++...             .|..|+++|+....++..
T Consensus       524 G~~~s~vgLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkms~~-------------~Q~aLlEaMEqqtIsI~K  590 (915)
T PTZ00111        524 GKSSSSVGLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKCHNE-------------SRLSLYEVMEQQTVTIAK  590 (915)
T ss_pred             CCCCccccccchhhhcccccCcccccCCcEEEcCCCeEEecchhhCCHH-------------HHHHHHHHHhCCEEEEec
Confidence            11111001111000 0000000111123445567899999999999877             799999999976655544


Q ss_pred             cccccCCCCCCceeEEecCcceeecc-------CccccHHHHHHhhcccc-cccccccccc
Q psy5910         152 LAEKKNPSQNPQVFNIDTTNILFIAG-------GAFSGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~i~ttn~~~i~~-------~~~~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                      .+.......+  +.+|+++|..+---       .+ -++++++++|||.. +-...|+++.
T Consensus       591 aGi~~tL~ar--~rVIAAaNP~~gryd~~~s~~en-i~Lp~~LLSRFDLIf~l~D~~d~~~  648 (915)
T PTZ00111        591 AGIVATLKAE--TAILASCNPINSRYNKNKAVIEN-INISPSLFTRFDLIYLVLDHIDQDT  648 (915)
T ss_pred             CCcceecCCC--eEEEEEcCCcccccCcccCcccc-cCCChHHhhhhcEEEEecCCCChHH
Confidence            4443333344  89999999864211       12 26899999999988 5555555443

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=99.46  E-value=2.8e-13  Score=114.71  Aligned_cols=136  Identities=24%  Similarity=0.388  Sum_probs=77.9

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCCC-------eEEeccC----cccccCc----cCCcH-HHHHHHHHHhcchhhh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINVP-------IIVVDAT----SFTEAGY----VGDDV-ESIIQKLLHECDYDVE  102 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-------~~~~~~~----~~~~~~~----~g~~~-~~~~~~~~~~~~~~~~  102 (225)
                      ..++++|+||||||||++|+.+|..+...       ++.+...    ++.. ++    .|... ...+..+...+.  ..
T Consensus       193 ~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~-G~rP~~vgy~~~~G~f~~~~~~A~--~~  269 (459)
T PRK11331        193 IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ-GYRPNGVGFRRKDGIFYNFCQQAK--EQ  269 (459)
T ss_pred             cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc-ccCCCCCCeEecCchHHHHHHHHH--hc
Confidence            35699999999999999999999988431       1222211    1110 11    11110 011222222220  01


Q ss_pred             hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc----Ccc----ccc-cccCCCCCCceeEEecCcce
Q psy5910         103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL----SIT----SLA-EKKNPSQNPQVFNIDTTNIL  173 (225)
Q Consensus       103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~----~~~----~~~-~~~~~~~~~~~~~i~ttn~~  173 (225)
                      ...+.+++|||+++....+            +...++.+||....    .++    ... .......+  +.+|+|+|. 
T Consensus       270 p~~~~vliIDEINRani~k------------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~N--l~IIgTMNt-  334 (459)
T PRK11331        270 PEKKYVFIIDEINRANLSK------------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPEN--VYIIGLMNT-  334 (459)
T ss_pred             ccCCcEEEEehhhccCHHH------------hhhhhhhhccccccccccceeeeccccccccccCCCC--eEEEEecCc-
Confidence            1367999999999988664            67788888874211    111    110 11222333  788888887 


Q ss_pred             eeccCccccHHHHHHhhcccc
Q psy5910         174 FIAGGAFSGIENFIINRINQE  194 (225)
Q Consensus       174 ~i~~~~~~~l~~al~~Rf~~~  194 (225)
                        ++.+...+|.|++|||...
T Consensus       335 --~Drs~~~lD~AlrRRF~fi  353 (459)
T PRK11331        335 --ADRSLAVVDYALRRRFSFI  353 (459)
T ss_pred             --cccchhhccHHHHhhhheE
Confidence              2223346999999999764

>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR

Probab=99.46  E-value=1.7e-13  Score=119.68  Aligned_cols=137  Identities=18%  Similarity=0.321  Sum_probs=88.8

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC--
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG--   80 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~--   80 (225)
                      .++|++.+++.+.+.+..            +.....+|||+|++||||+++|++|++..   +.||+.++|..+.+..  
T Consensus       213 ~iiG~S~~m~~~~~~i~~------------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lle  280 (526)
T TIGR02329       213 DLLGASAPMEQVRALVRL------------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLE  280 (526)
T ss_pred             heeeCCHHHHHHHHHHHH------------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHH
Confidence            478998888888776621            22344699999999999999999999875   5789999998774311  


Q ss_pred             --ccCCcHHHHHHHHHH-hcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910          81 --YVGDDVESIIQKLLH-ECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN  157 (225)
Q Consensus        81 --~~g~~~~~~~~~~~~-~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~  157 (225)
                        +.|.. ...++...+ ...+.+....++.|||||++.+...             +|..|+++|+.....  ..++...
T Consensus       281 seLFG~~-~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~-------------~Q~~Ll~~L~~~~~~--r~g~~~~  344 (526)
T TIGR02329       281 AELFGYE-EGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLP-------------LQTRLLRVLEEREVV--RVGGTEP  344 (526)
T ss_pred             HHhcCCc-ccccccccccccccchhhcCCceEEecChHhCCHH-------------HHHHHHHHHhcCcEE--ecCCCce
Confidence              11111 000000000 0112334567899999999999988             899999999864322  1111111


Q ss_pred             CCCCCceeEEecCcc
Q psy5910         158 PSQNPQVFNIDTTNI  172 (225)
Q Consensus       158 ~~~~~~~~~i~ttn~  172 (225)
                      ...+  +.+|++|+.
T Consensus       345 ~~~d--vRiIaat~~  357 (526)
T TIGR02329       345 VPVD--VRVVAATHC  357 (526)
T ss_pred             eeec--ceEEeccCC
Confidence            1112  678888877

At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=99.46  E-value=3.1e-13  Score=113.58  Aligned_cols=147  Identities=22%  Similarity=0.260  Sum_probs=89.1

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE--ecc----------
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV--VDA----------   73 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~----------   73 (225)
                      .++||+++++.+...+...             ..+..+||+||||+|||++|+.+++.+.++-..  ..|          
T Consensus        15 ~iig~~~~~~~l~~~~~~~-------------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~   81 (355)
T TIGR02397        15 DVIGQEHIVQTLKNAIKNG-------------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN   81 (355)
T ss_pred             hccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence            4589999999998877210             112357899999999999999999988543100  000          


Q ss_pred             ----CcccccCccCC---cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910          74 ----TSFTEAGYVGD---DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN  146 (225)
Q Consensus        74 ----~~~~~~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~  146 (225)
                          .++.  .+.+.   . ...++.++..+..........|++|||+|.+...             .++.|++.++...
T Consensus        82 ~~~~~~~~--~~~~~~~~~-~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~-------------~~~~Ll~~le~~~  145 (355)
T TIGR02397        82 SGSSLDVI--EIDAASNNG-VDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKS-------------AFNALLKTLEEPP  145 (355)
T ss_pred             cCCCCCEE--EeeccccCC-HHHHHHHHHHHhcCcccCCceEEEEeChhhcCHH-------------HHHHHHHHHhCCc
Confidence                0010  01111   1 1223344443321112235579999999998754             6788999997521


Q ss_pred             cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                   ..  +++|.+++.       ++.+.+++++|+. .+.|+.|+.++
T Consensus       146 -------------~~--~~lIl~~~~-------~~~l~~~l~sr~~-~~~~~~~~~~~  180 (355)
T TIGR02397       146 -------------EH--VVFILATTE-------PHKIPATILSRCQ-RFDFKRIPLED  180 (355)
T ss_pred             -------------cc--eeEEEEeCC-------HHHHHHHHHhhee-EEEcCCCCHHH
Confidence                         11  444444433       4578889999973 47777776654

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>TIGR01817 nifA Nif-specific regulatory protein

Probab=99.46  E-value=1.8e-13  Score=120.80  Aligned_cols=139  Identities=22%  Similarity=0.363  Sum_probs=88.7

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG   80 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~   80 (225)
                      .+.++|++.+++.+.+.+..            +.....+|||+|++||||+++|++|+...   +.||+.++|..+.+..
T Consensus       195 ~~~liG~s~~~~~~~~~~~~------------~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~  262 (534)
T TIGR01817       195 EDGIIGKSPAMRQVVDQARV------------VARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETL  262 (534)
T ss_pred             cCceEECCHHHHHHHHHHHH------------HhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHH
Confidence            45789999888888776621            22344689999999999999999999886   5689999998764310


Q ss_pred             ----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          81 ----YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        81 ----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                          ..|.. ...+........+.+....+++|||||++.+...             +|..|+.+|+.....  ..++..
T Consensus       263 ~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~-------------~Q~~Ll~~l~~~~~~--~~~~~~  326 (534)
T TIGR01817       263 LESELFGHE-KGAFTGAIAQRKGRFELADGGTLFLDEIGEISPA-------------FQAKLLRVLQEGEFE--RVGGNR  326 (534)
T ss_pred             HHHHHcCCC-CCccCCCCcCCCCcccccCCCeEEEechhhCCHH-------------HHHHHHHHHhcCcEE--ECCCCc
Confidence                00110 0000000000112234567899999999999988             899999999864321  111111


Q ss_pred             CCCCCCceeEEecCcc
Q psy5910         157 NPSQNPQVFNIDTTNI  172 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~  172 (225)
                      ....  ++.+|++|+.
T Consensus       327 ~~~~--~~riI~~s~~  340 (534)
T TIGR01817       327 TLKV--DVRLVAATNR  340 (534)
T ss_pred             eEee--cEEEEEeCCC
Confidence            1111  2677777776

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.45  E-value=3.5e-13  Score=114.74  Aligned_cols=150  Identities=19%  Similarity=0.237  Sum_probs=88.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCCeEE----------ecc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVPIIV----------VDA   73 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~~~~----------~~~   73 (225)
                      +.|+||+.+++.|..++...              ..+ .+||+||||||||++|+++|+.+.+.-..          -.|
T Consensus        16 ~eiiGq~~~~~~L~~~~~~~--------------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c   81 (397)
T PRK14955         16 ADITAQEHITRTIQNSLRMG--------------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC   81 (397)
T ss_pred             hhccChHHHHHHHHHHHHhC--------------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence            45689999999998866210              112 48899999999999999999999663100          011


Q ss_pred             Ccc------c---cc---CccCCc-H-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910          74 TSF------T---EA---GYVGDD-V-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL  139 (225)
Q Consensus        74 ~~~------~---~~---~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll  139 (225)
                      ...      .   ..   .+.|.. . ...++.+........-.....|++|||++.+...             .++.|+
T Consensus        82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~-------------~~~~LL  148 (397)
T PRK14955         82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIA-------------AFNAFL  148 (397)
T ss_pred             CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHH-------------HHHHHH
Confidence            100      0   00   011211 0 1222333222211112235679999999999865             678999


Q ss_pred             HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +.|+...             .. .++++.+++        ...+.+++++|+. .+.|..++.+.
T Consensus       149 k~LEep~-------------~~-t~~Il~t~~--------~~kl~~tl~sR~~-~v~f~~l~~~e  190 (397)
T PRK14955        149 KTLEEPP-------------PH-AIFIFATTE--------LHKIPATIASRCQ-RFNFKRIPLEE  190 (397)
T ss_pred             HHHhcCC-------------CC-eEEEEEeCC--------hHHhHHHHHHHHH-HhhcCCCCHHH
Confidence            9998521             11 033444433        3478888888863 47777665543

>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D

Probab=99.45  E-value=1.6e-13  Score=121.83  Aligned_cols=143  Identities=15%  Similarity=0.213  Sum_probs=93.8

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcccccCccCC-cHHHHHH-HHHHhcchhhhhhCCCEEEEcchh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEAGYVGD-DVESIIQ-KLLHECDYDVELAEQSIIYIDEID  115 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~~~~g~-~~~~~~~-~~~~~~~~~~~~~~~~vl~iDEid  115 (225)
                      -++|||.|+||||||++|+++++.++.  +|+.+......+ ...|. ++...+. ..+....+.+....++++|+||++
T Consensus        16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d-~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~   94 (589)
T TIGR02031        16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTED-RLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN   94 (589)
T ss_pred             cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchh-hcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence            469999999999999999999998854  588887643322 23332 2111111 111111344556778999999999


Q ss_pred             hhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-
Q psy5910         116 KISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-  194 (225)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-  194 (225)
                      .+.+.             +|+.|+++|+.....+...+....-..+  +.+|+|+|..- +   ...+++++++||..+ 
T Consensus        95 rl~~~-------------~q~~Ll~al~~g~v~i~r~G~~~~~p~~--f~lIAt~np~e-~---~g~L~~~LldRf~l~v  155 (589)
T TIGR02031        95 LLDDG-------------LSNRLLQALDEGVVIVEREGISVVHPAK--FALIATYDPAE-G---GGGLPDHLLDRLALHV  155 (589)
T ss_pred             hCCHH-------------HHHHHHHHHHcCCeEEEECCCceeecCc--eEEEEecCCcc-c---cCCCCHHHHHhccCee
Confidence            99988             8999999998765444333322211123  88888888731 1   126899999999996 


Q ss_pred             -cccccccc
Q psy5910         195 -TNFLEKLN  202 (225)
Q Consensus       195 -i~~~~~~~  202 (225)
                       +.++.+..
T Consensus       156 ~~~~~~~~~  164 (589)
T TIGR02031       156 SLEDVASQD  164 (589)
T ss_pred             ecCCCCCHH
Confidence             44444433

This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=99.44  E-value=2.8e-13  Score=120.78  Aligned_cols=115  Identities=28%  Similarity=0.385  Sum_probs=74.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~   74 (225)
                      +.++||+.+++.+.+.+..              ....+++|+||||||||++|+.+++..          +.+|+.++|.
T Consensus       154 ~~iiGqs~~~~~l~~~ia~--------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~  219 (615)
T TIGR02903       154 SEIVGQERAIKALLAKVAS--------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT  219 (615)
T ss_pred             HhceeCcHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence            3578999999887665511              123479999999999999999998766          3568889886


Q ss_pred             cccc------cCccCCcHHHH---HHHHHHh------cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910          75 SFTE------AGYVGDDVESI---IQKLLHE------CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL  139 (225)
Q Consensus        75 ~~~~------~~~~g~~~~~~---~~~~~~~------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll  139 (225)
                      .+..      ..+.|......   ....+..      ..+.+....+++|||||++.+.+.             .|..|+
T Consensus       220 ~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll  286 (615)
T TIGR02903       220 TLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLL  286 (615)
T ss_pred             hccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHH
Confidence            6521      01111110000   0011111      112233456889999999999877             799999


Q ss_pred             HHHhcCC
Q psy5910         140 KLIEGVN  146 (225)
Q Consensus       140 ~~l~~~~  146 (225)
                      .+|+...
T Consensus       287 ~~Le~~~  293 (615)
T TIGR02903       287 KVLEDKR  293 (615)
T ss_pred             HHHhhCe
Confidence            9998643

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.44  E-value=4.5e-13  Score=116.21  Aligned_cols=150  Identities=22%  Similarity=0.302  Sum_probs=88.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-------eEE-eccCcc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-------IIV-VDATSF   76 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-------~~~-~~~~~~   76 (225)
                      +.++||+++++.|..++...             .-...+||+||+|+|||++|+.+|+.+++.       +-. .+|..+
T Consensus        16 ~diiGq~~i~~~L~~~i~~~-------------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i   82 (486)
T PRK14953         16 KEVIGQEIVVRILKNAVKLQ-------------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI   82 (486)
T ss_pred             HHccChHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence            34689999999998877221             011246799999999999999999998642       100 001000


Q ss_pred             cc---cC---ccC---CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          77 TE---AG---YVG---DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        77 ~~---~~---~~g---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                      ..   ..   ..+   .. ...++.+..............|++|||++.+...             .+++|+..|+... 
T Consensus        83 ~~g~~~d~~eidaas~~g-vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~-------------a~naLLk~LEepp-  147 (486)
T PRK14953         83 DKGSFPDLIEIDAASNRG-IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKE-------------AFNALLKTLEEPP-  147 (486)
T ss_pred             hcCCCCcEEEEeCccCCC-HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHH-------------HHHHHHHHHhcCC-
Confidence            00   00   000   11 1112333222211112345679999999998765             6889999998521 


Q ss_pred             CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                  .. .+++++|++        ...+++++++|+. .+.|..++.++
T Consensus       148 ------------~~-~v~Il~tt~--------~~kl~~tI~SRc~-~i~f~~ls~~e  182 (486)
T PRK14953        148 ------------PR-TIFILCTTE--------YDKIPPTILSRCQ-RFIFSKPTKEQ  182 (486)
T ss_pred             ------------CC-eEEEEEECC--------HHHHHHHHHHhce-EEEcCCCCHHH
Confidence                        11 044444443        3578889999874 47777776554

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=99.44  E-value=4.5e-13  Score=115.47  Aligned_cols=148  Identities=20%  Similarity=0.225  Sum_probs=89.2

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe---------ccC--
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV---------DAT--   74 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~---------~~~--   74 (225)
                      .|+||+++++.+...+..-             .-...+||+||+|+|||++|+.+|+.+.+.-..-         +|.  
T Consensus        18 diiGq~~~v~~L~~~i~~~-------------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i   84 (451)
T PRK06305         18 EILGQDAVVAVLKNALRFN-------------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI   84 (451)
T ss_pred             HhcCcHHHHHHHHHHHHcC-------------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence            4589999999998877211             1112578999999999999999999885431000         000  


Q ss_pred             ------cccccCccCCcH--HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910          75 ------SFTEAGYVGDDV--ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN  146 (225)
Q Consensus        75 ------~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~  146 (225)
                            ++.  .+.|...  ...++.+.+............|++|||+|.+...             .++.|++.|+...
T Consensus        85 ~~~~~~d~~--~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lEep~  149 (451)
T PRK06305         85 SSGTSLDVL--EIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLEEPP  149 (451)
T ss_pred             hcCCCCceE--EeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhhcCC
Confidence                  000  0112110  1122222222111112346789999999999865             6899999998621


Q ss_pred             cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                   ..  +++|.+++.       ...+.+++++|+. .+.|..++.++
T Consensus       150 -------------~~--~~~Il~t~~-------~~kl~~tI~sRc~-~v~f~~l~~~e  184 (451)
T PRK06305        150 -------------QH--VKFFLATTE-------IHKIPGTILSRCQ-KMHLKRIPEET  184 (451)
T ss_pred             -------------CC--ceEEEEeCC-------hHhcchHHHHhce-EEeCCCCCHHH
Confidence                         12  444444444       4578889999863 47777666654

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.44  E-value=4.9e-13  Score=118.96  Aligned_cols=149  Identities=21%  Similarity=0.217  Sum_probs=91.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE----eccC------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV----VDAT------   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~----~~~~------   74 (225)
                      +.++||+++++.|..++...             .-...+||+||+|+|||++|+++|+.+++....    -.|+      
T Consensus        16 ~~liGq~~i~~~L~~~l~~~-------------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~   82 (620)
T PRK14948         16 DELVGQEAIATTLKNALISN-------------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR   82 (620)
T ss_pred             hhccChHHHHHHHHHHHHcC-------------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence            34689999999998877321             112378899999999999999999998763110    0111      


Q ss_pred             --------cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          75 --------SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        75 --------~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                              ++.. ....... ...++.+...+..........|++|||+|.|...             .++.|++.||+-
T Consensus        83 ~i~~g~h~D~~ei~~~~~~~-vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~-------------a~naLLK~LEeP  148 (620)
T PRK14948         83 AIAAGNALDVIEIDAASNTG-VDNIRELIERAQFAPVQARWKVYVIDECHMLSTA-------------AFNALLKTLEEP  148 (620)
T ss_pred             HHhcCCCccEEEEeccccCC-HHHHHHHHHHHhhChhcCCceEEEEECccccCHH-------------HHHHHHHHHhcC
Confidence                    0100 0001111 2334555544322212245679999999999865             789999999952


Q ss_pred             CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                                   ...  +++|.+++.       +..+.+.+++|+. .+.|..+..+
T Consensus       149 -------------p~~--tvfIL~t~~-------~~~llpTIrSRc~-~~~f~~l~~~  183 (620)
T PRK14948        149 -------------PPR--VVFVLATTD-------PQRVLPTIISRCQ-RFDFRRIPLE  183 (620)
T ss_pred             -------------CcC--eEEEEEeCC-------hhhhhHHHHhhee-EEEecCCCHH
Confidence                         122  444444433       4578888998863 3666555443

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=99.43  E-value=5.2e-13  Score=117.58  Aligned_cols=149  Identities=18%  Similarity=0.188  Sum_probs=89.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE--eccC--------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV--VDAT--------   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~--~~~~--------   74 (225)
                      +.|+||+++++.|..++...             .-...+||+||+|+|||++|+++|+.+++.-..  ..|.        
T Consensus        16 ~diiGqe~iv~~L~~~i~~~-------------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i   82 (563)
T PRK06647         16 NSLEGQDFVVETLKHSIESN-------------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI   82 (563)
T ss_pred             HHccCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence            35689999999998877211             111247899999999999999999998653100  0000        


Q ss_pred             ------cccccCccCCc--HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910          75 ------SFTEAGYVGDD--VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN  146 (225)
Q Consensus        75 ------~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~  146 (225)
                            ++.  .+.|..  ....++.+..............|++|||++.+...             .+++|++.|+.. 
T Consensus        83 ~~~~~~dv~--~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~-------------a~naLLK~LEep-  146 (563)
T PRK06647         83 DNDNSLDVI--EIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNS-------------AFNALLKTIEEP-  146 (563)
T ss_pred             HcCCCCCeE--EecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHH-------------HHHHHHHhhccC-
Confidence                  000  011211  01122333322211112346679999999999865             789999999852 


Q ss_pred             cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                  ...  +++|.+++.       +..+.+++++|+. .+.|..++.+.
T Consensus       147 ------------p~~--~vfI~~tte-------~~kL~~tI~SRc~-~~~f~~l~~~e  182 (563)
T PRK06647        147 ------------PPY--IVFIFATTE-------VHKLPATIKSRCQ-HFNFRLLSLEK  182 (563)
T ss_pred             ------------CCC--EEEEEecCC-------hHHhHHHHHHhce-EEEecCCCHHH
Confidence                        122  444443333       3578999999964 36666665543

>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=99.43  E-value=5.8e-14  Score=118.10  Aligned_cols=164  Identities=16%  Similarity=0.279  Sum_probs=106.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC----CeE------EeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV----PII------VVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~----~~~------~~~~~   74 (225)
                      .+|+||+.+|+.+.-+.                ....++|++||||||||++|+.+...+.-    .++      .+.+.
T Consensus       179 ~DV~GQ~~AKrAleiAA----------------AGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~  242 (490)
T COG0606         179 KDVKGQEQAKRALEIAA----------------AGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGD  242 (490)
T ss_pred             hhhcCcHHHHHHHHHHH----------------hcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccc
Confidence            46899999999998776                45569999999999999999998877621    011      11111


Q ss_pred             ccc------ccCc--cCCcHHHHHHHHHHh----cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHH
Q psy5910          75 SFT------EAGY--VGDDVESIIQKLLHE----CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLI  142 (225)
Q Consensus        75 ~~~------~~~~--~g~~~~~~~~~~~~~----~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l  142 (225)
                      ...      ..-|  .+.+.+  ...+..-    ..+.+..+.++|+||||+-....+             +.+.|.+-|
T Consensus       243 ~~~~~~~~~~rPFr~PHHsaS--~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef~~~-------------iLe~LR~PL  307 (490)
T COG0606         243 LHEGCPLKIHRPFRAPHHSAS--LAALVGGGGVPRPGEISLAHNGVLFLDELPEFKRS-------------ILEALREPL  307 (490)
T ss_pred             ccccCccceeCCccCCCccch--HHHHhCCCCCCCCCceeeecCCEEEeeccchhhHH-------------HHHHHhCcc
Confidence            000      0000  111100  1111111    123445678899999998887765             889999999


Q ss_pred             hcCCcCccccccccCCCCCCceeEEecCccee---------eccCcc-------ccHHHHHHhhccccccccccc
Q psy5910         143 EGVNLSITSLAEKKNPSQNPQVFNIDTTNILF---------IAGGAF-------SGIENFIINRINQETNFLEKL  201 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~---------i~~~~~-------~~l~~al~~Rf~~~i~~~~~~  201 (225)
                      |.....+...........+  |.+++++|.--         -|.+++       +.+...+++|||..+..+.++
T Consensus       308 E~g~i~IsRa~~~v~ypa~--Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~  380 (490)
T COG0606         308 ENGKIIISRAGSKVTYPAR--FQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLS  380 (490)
T ss_pred             ccCcEEEEEcCCeeEEeee--eEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCC
Confidence            9877776665554433344  88899998742         233332       557889999999998877766

>smart00763 AAA_PrkA PrkA AAA domain

Probab=99.43  E-value=2.8e-13  Score=111.88  Aligned_cols=176  Identities=19%  Similarity=0.175  Sum_probs=107.3

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC-------CeEEecc--
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV-------PIIVVDA--   73 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~-------~~~~~~~--   73 (225)
                      +++.++|++++++++...+.....+        ....+.-++|+|||||||||+|++|++.++.       +++.+.+  
T Consensus        49 F~~~~~G~~~~i~~lv~~l~~~a~g--------~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~  120 (361)
T smart00763       49 FDHDFFGMEEAIERFVNYFKSAAQG--------LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNG  120 (361)
T ss_pred             cchhccCcHHHHHHHHHHHHHHHhc--------CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecC
Confidence            3458999999999998766433321        1123345679999999999999999999966       7777766  


Q ss_pred             --Cccccc-----------------C-----ccCCcHHHHHHHHH-Hhc-------------------------------
Q psy5910          74 --TSFTEA-----------------G-----YVGDDVESIIQKLL-HEC-------------------------------   97 (225)
Q Consensus        74 --~~~~~~-----------------~-----~~g~~~~~~~~~~~-~~~-------------------------------   97 (225)
                        +.+.+.                 +     +.|.- ...-+..+ ...                               
T Consensus       121 ~~sp~~e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l-~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~  199 (361)
T smart00763      121 EESPMHEDPLHLFPDELREDLEDEYGIPRRRLEGDL-SPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDEN  199 (361)
T ss_pred             CCCCCccCCcccCCHHHHHHHHHHhCCChhhcCCCC-CHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCC
Confidence              222110                 0     00000 00000000 000                               


Q ss_pred             -----------------------------chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910          98 -----------------------------DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS  148 (225)
Q Consensus        98 -----------------------------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~  148 (225)
                                                   .|.+..+.++|+-|+|+.++..+             +++.|+.++++....
T Consensus       200 ~qdi~~L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~-------------~l~~LL~~~qE~~v~  266 (361)
T smart00763      200 NQDISELTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIK-------------FLHPLLTATQEGNIK  266 (361)
T ss_pred             cccHHHHhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHH-------------HHHHHhhhhhcceEe
Confidence                                         13344556789999999998877             899999999987766


Q ss_pred             ccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910         149 ITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                      ++..... .+.   +.++|++||..---.-......+|+++|+... +.|+.--.++
T Consensus       267 ~~~~~~~-~~~---d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E  319 (361)
T smart00763      267 GTGGFAM-IPI---DGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEE  319 (361)
T ss_pred             cCCcccc-ccc---ceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcCCHHHH
Confidence            5533221 111   15677778773100000024579999999865 7777666555

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional

Probab=99.43  E-value=5.4e-13  Score=117.02  Aligned_cols=138  Identities=20%  Similarity=0.361  Sum_probs=89.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc--
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA--   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~--   79 (225)
                      ..++|++..++.+.+.+..            +.....+|||+|++||||+++|++|+...   +.+|+.++|..+.+.  
T Consensus       187 ~~iig~s~~~~~~~~~i~~------------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~  254 (509)
T PRK05022        187 GEMIGQSPAMQQLKKEIEV------------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA  254 (509)
T ss_pred             CceeecCHHHHHHHHHHHH------------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence            3588998888888776622            22345699999999999999999999886   578999999877431  


Q ss_pred             --CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910          80 --GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN  157 (225)
Q Consensus        80 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~  157 (225)
                        .+.|.. ...+........+.+....+++|||||++.+...             +|..|+++|+.....  ..++...
T Consensus       255 e~~lfG~~-~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~--~~g~~~~  318 (509)
T PRK05022        255 ESELFGHV-KGAFTGAISNRSGKFELADGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQ--RVGSDRS  318 (509)
T ss_pred             HHHhcCcc-ccccCCCcccCCcchhhcCCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEe--eCCCCcc
Confidence              011110 0000000001112344568899999999999988             899999999864321  1111111


Q ss_pred             CCCCCceeEEecCcc
Q psy5910         158 PSQNPQVFNIDTTNI  172 (225)
Q Consensus       158 ~~~~~~~~~i~ttn~  172 (225)
                      ...  ++.+|++|+.
T Consensus       319 ~~~--~~RiI~~t~~  331 (509)
T PRK05022        319 LRV--DVRVIAATNR  331 (509)
T ss_pred             eec--ceEEEEecCC
Confidence            112  2788888887

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=99.43  E-value=3.6e-13  Score=112.33  Aligned_cols=150  Identities=23%  Similarity=0.311  Sum_probs=88.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-----~~~~~~~~~~~~~~   79 (225)
                      +.++|++++++.|...+..              ...++++|+||||||||++|+++++.+.     .++..+++.++...
T Consensus        15 ~~~~g~~~~~~~L~~~~~~--------------~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~   80 (337)
T PRK12402         15 EDILGQDEVVERLSRAVDS--------------PNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQ   80 (337)
T ss_pred             HHhcCCHHHHHHHHHHHhC--------------CCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhc
Confidence            3468999999999887621              1123789999999999999999999883     34567776554210


Q ss_pred             C---------c---cCC------cHHHHHHHHHHhcchh-hhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          80 G---------Y---VGD------DVESIIQKLLHECDYD-VELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        80 ~---------~---~g~------~~~~~~~~~~~~~~~~-~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                      .         +   .+.      .....++.+.+..... .......+|+|||++.+...             .++.|..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~  147 (337)
T PRK12402         81 GKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRED-------------AQQALRR  147 (337)
T ss_pred             chhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHH
Confidence            0         0   000      0011222222111000 00134579999999998755             6788888


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .|+....             . ..+++.+++        ...+.+.+.+|+ ..+.|..++.+.
T Consensus       148 ~le~~~~-------------~-~~~Il~~~~--------~~~~~~~L~sr~-~~v~~~~~~~~~  188 (337)
T PRK12402        148 IMEQYSR-------------T-CRFIIATRQ--------PSKLIPPIRSRC-LPLFFRAPTDDE  188 (337)
T ss_pred             HHHhccC-------------C-CeEEEEeCC--------hhhCchhhcCCc-eEEEecCCCHHH
Confidence            8875321             1 023333333        235667788885 346776666543

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=99.41  E-value=7.8e-13  Score=117.04  Aligned_cols=148  Identities=22%  Similarity=0.233  Sum_probs=91.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec-------cC---
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD-------AT---   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~-------~~---   74 (225)
                      +.|+||+.+++.|...+..-             .....+||+||+|+|||++|+.+|+.+++.....+       |.   
T Consensus        24 ~dliGq~~~v~~L~~~~~~g-------------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~   90 (598)
T PRK09111         24 DDLIGQEAMVRTLTNAFETG-------------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE   90 (598)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence            45699999999998866211             11236889999999999999999999876432111       00   


Q ss_pred             -----------cccc---cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          75 -----------SFTE---AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        75 -----------~~~~---~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                                 ++..   .+..|   ...++.+..............|++|||++.+...             .++.|++
T Consensus        91 ~C~~i~~g~h~Dv~e~~a~s~~g---vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~-------------a~naLLK  154 (598)
T PRK09111         91 HCQAIMEGRHVDVLEMDAASHTG---VDDIREIIESVRYRPVSARYKVYIIDEVHMLSTA-------------AFNALLK  154 (598)
T ss_pred             HHHHHhcCCCCceEEecccccCC---HHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHH-------------HHHHHHH
Confidence                       0000   00111   1223344333321222345679999999999865             7899999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .|++..             ..  +.+|.+++.       .+.+.+.+++|+ ..+.|..++.+.
T Consensus       155 tLEePp-------------~~--~~fIl~tte-------~~kll~tI~SRc-q~~~f~~l~~~e  195 (598)
T PRK09111        155 TLEEPP-------------PH--VKFIFATTE-------IRKVPVTVLSRC-QRFDLRRIEADV  195 (598)
T ss_pred             HHHhCC-------------CC--eEEEEEeCC-------hhhhhHHHHhhe-eEEEecCCCHHH
Confidence            998621             22  333333332       346788899886 347787777654

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=99.41  E-value=5.8e-13  Score=115.86  Aligned_cols=142  Identities=27%  Similarity=0.345  Sum_probs=89.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVP----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~----------------   67 (225)
                      +.|+||+++++.|...+..-              ...+ +||+||+|+|||++|+++++.+.++                
T Consensus        14 deiiGqe~v~~~L~~~I~~g--------------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~   79 (535)
T PRK08451         14 DELIGQESVSKTLSLALDNN--------------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS   79 (535)
T ss_pred             HHccCcHHHHHHHHHHHHcC--------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence            34699999999998877211              1124 5799999999999999999988431                


Q ss_pred             --------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHH
Q psy5910          68 --------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLL  139 (225)
Q Consensus        68 --------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll  139 (225)
                              ++.+++..     ..  . ...++.+..............|++|||++.+...             .+++|+
T Consensus        80 ~~~~~h~dv~eldaas-----~~--g-Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~-------------A~NALL  138 (535)
T PRK08451         80 ALENRHIDIIEMDAAS-----NR--G-IDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKE-------------AFNALL  138 (535)
T ss_pred             HhhcCCCeEEEecccc-----cc--C-HHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHHHH
Confidence                    11111110     00  1 1223333332211111235679999999999866             799999


Q ss_pred             HHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         140 KLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       140 ~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +.|+..             ...  +.+|.+++.       +..+.+++++|. ..+.|..++.+.
T Consensus       139 K~LEEp-------------p~~--t~FIL~ttd-------~~kL~~tI~SRc-~~~~F~~Ls~~e  180 (535)
T PRK08451        139 KTLEEP-------------PSY--VKFILATTD-------PLKLPATILSRT-QHFRFKQIPQNS  180 (535)
T ss_pred             HHHhhc-------------CCc--eEEEEEECC-------hhhCchHHHhhc-eeEEcCCCCHHH
Confidence            999962             122  333333333       358889999994 457777776654

>TIGR00764 lon_rel lon-related putative ATP-dependent protease

Probab=99.41  E-value=3.8e-13  Score=119.62  Aligned_cols=49  Identities=33%  Similarity=0.610  Sum_probs=42.5

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      |-+.++||+++++.+..++                ....+++|+||||||||++|+++++.++..
T Consensus        16 ~~~~viG~~~a~~~l~~a~----------------~~~~~~ll~G~pG~GKT~la~~la~~l~~~   64 (608)
T TIGR00764        16 LIDQVIGQEEAVEIIKKAA----------------KQKRNVLLIGEPGVGKSMLAKAMAELLPDE   64 (608)
T ss_pred             hHhhccCHHHHHHHHHHHH----------------HcCCCEEEECCCCCCHHHHHHHHHHHcCch
Confidence            5677899999999998877                344589999999999999999999999654

Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.

>KOG0991|consensus

Probab=99.41  E-value=3e-13  Score=104.02  Aligned_cols=109  Identities=26%  Similarity=0.346  Sum_probs=76.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-C----CCeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-N----VPIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-~----~~~~~~~~~~~~~~   79 (225)
                      ..|+|.++.++.|....              -.-+-+++++.|||||||||-+.++|+.+ |    -.+..+|+++-   
T Consensus        27 ~dIVGNe~tv~rl~via--------------~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde---   89 (333)
T KOG0991|consen   27 QDIVGNEDTVERLSVIA--------------KEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE---   89 (333)
T ss_pred             HHhhCCHHHHHHHHHHH--------------HcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc---
Confidence            35799999998886643              11334689999999999999999999887 3    22556666553   


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                        .|-++-..--++|.+....+...+..|+++||+|++...             +|++|.+.||-+
T Consensus        90 --RGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g-------------AQQAlRRtMEiy  140 (333)
T KOG0991|consen   90 --RGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG-------------AQQALRRTMEIY  140 (333)
T ss_pred             --cccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH-------------HHHHHHHHHHHH
Confidence              344444333344544322223346679999999999865             899999999853

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.40  E-value=1.4e-12  Score=115.77  Aligned_cols=151  Identities=20%  Similarity=0.259  Sum_probs=89.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEE----------eccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIV----------VDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~----------~~~~   74 (225)
                      +.|+||+.+++.|..++..-.            . ...+||+||+|||||++|+.+|+.+++.-..          -.|+
T Consensus        16 ~eivGQe~i~~~L~~~i~~~r------------i-~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg   82 (620)
T PRK14954         16 ADITAQEHITHTIQNSLRMDR------------V-GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG   82 (620)
T ss_pred             HHhcCcHHHHHHHHHHHHcCC------------C-CeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence            456899999999988662110            1 1248899999999999999999999763110          0111


Q ss_pred             cc---------ccc---CccCCc-H-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          75 SF---------TEA---GYVGDD-V-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        75 ~~---------~~~---~~~g~~-~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                      ..         ...   .+.|.. . ...++.+.+......-....-|++|||++.+...             .++.|++
T Consensus        83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~naLLK  149 (620)
T PRK14954         83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------AFNAFLK  149 (620)
T ss_pred             cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------HHHHHHH
Confidence            00         000   012211 0 1223333322211112235679999999999865             6899999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .|++-.             .. .++++.|++        ...+.+.+++|. ..+.|..++.++
T Consensus       150 ~LEePp-------------~~-tv~IL~t~~--------~~kLl~TI~SRc-~~vef~~l~~~e  190 (620)
T PRK14954        150 TLEEPP-------------PH-AIFIFATTE--------LHKIPATIASRC-QRFNFKRIPLDE  190 (620)
T ss_pred             HHhCCC-------------CC-eEEEEEeCC--------hhhhhHHHHhhc-eEEecCCCCHHH
Confidence            999621             11 034444433        357888888885 347777766543

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=99.40  E-value=1.3e-12  Score=108.38  Aligned_cols=145  Identities=23%  Similarity=0.224  Sum_probs=94.9

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhC-------------------
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIIN-------------------   65 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~-------------------   65 (225)
                      .++|+++++..+...+....             ...+ +||+||||||||++|.++|+.+.                   
T Consensus         2 ~~~~~~~~~~~l~~~~~~~~-------------~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~   68 (325)
T COG0470           2 ELVPWQEAVKRLLVQALESG-------------RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLI   68 (325)
T ss_pred             CcccchhHHHHHHHHHHhcC-------------CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHH
Confidence            45777777777766552111             1235 88999999999999999999986                   


Q ss_pred             -----CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          66 -----VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        66 -----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                           ..++.+++++.....    -....++.+.............-|++|||+|.+...             ++++|+.
T Consensus        69 ~~~~~~d~lel~~s~~~~~~----i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~-------------A~nallk  131 (325)
T COG0470          69 PAGNHPDFLELNPSDLRKID----IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTED-------------AANALLK  131 (325)
T ss_pred             hhcCCCceEEecccccCCCc----chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHH
Confidence                 356777776653211    112233343333211111245679999999999987             7999999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                      .++..             ..+  ..++.++|.       +..+-+.+++|. ..+.|+.|...
T Consensus       132 ~lEep-------------~~~--~~~il~~n~-------~~~il~tI~SRc-~~i~f~~~~~~  171 (325)
T COG0470         132 TLEEP-------------PKN--TRFILITND-------PSKILPTIRSRC-QRIRFKPPSRL  171 (325)
T ss_pred             HhccC-------------CCC--eEEEEEcCC-------hhhccchhhhcc-eeeecCCchHH
Confidence            99862             222  555556665       668888999984 34666655543

>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional

Probab=99.40  E-value=9.5e-13  Score=115.62  Aligned_cols=131  Identities=19%  Similarity=0.278  Sum_probs=84.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGY   81 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~   81 (225)
                      +.++|.+.+.+.+.+.+..            +.....+|||+|++||||+++|++++...   +.||+.++|..+.+.  
T Consensus       204 ~~~ig~s~~~~~~~~~~~~------------~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~--  269 (520)
T PRK10820        204 SQIVAVSPKMRQVVEQARK------------LAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDD--  269 (520)
T ss_pred             cceeECCHHHHHHHHHHHH------------HhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHH--
Confidence            3567877766666554411            11334689999999999999999998776   468999999886431  


Q ss_pred             cCCcHHHHHHHHHHh-----------cchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910          82 VGDDVESIIQKLLHE-----------CDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT  150 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~-----------~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  150 (225)
                            ..-..+|..           ..+.+..+.+++|||||++.+.+.             +|..|+++|+.....  
T Consensus       270 ------~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~--  328 (520)
T PRK10820        270 ------VVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPR-------------MQAKLLRFLNDGTFR--  328 (520)
T ss_pred             ------HHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCCcc--
Confidence                  000111111           112234567899999999999988             899999999864321  


Q ss_pred             ccccccCCCCCCceeEEecCcc
Q psy5910         151 SLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       151 ~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      ..+.......+  +.+|++|+.
T Consensus       329 ~~g~~~~~~~~--vRiI~st~~  348 (520)
T PRK10820        329 RVGEDHEVHVD--VRVICATQK  348 (520)
T ss_pred             cCCCCcceeee--eEEEEecCC
Confidence            11111111122  677777766

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.40  E-value=7.1e-13  Score=111.98  Aligned_cols=149  Identities=22%  Similarity=0.264  Sum_probs=88.4

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc----cc-cC
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF----TE-AG   80 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~----~~-~~   80 (225)
                      .++||+.+++.+...+...             ..+.++||+||||+|||++|+++++.+..+.....+...    .+ ..
T Consensus        18 ~iig~~~~~~~l~~~i~~~-------------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~   84 (367)
T PRK14970         18 DVVGQSHITNTLLNAIENN-------------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA   84 (367)
T ss_pred             hcCCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence            4589999999998877221             112478899999999999999999988653211111000    00 00


Q ss_pred             ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910          81 YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ  160 (225)
Q Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~  160 (225)
                      ..... ...+..++..+..........|+++||++.+...             .++.|+..|++..             .
T Consensus        85 ~~~~~-~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~-------------~~~~ll~~le~~~-------------~  137 (367)
T PRK14970         85 ASNNS-VDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSA-------------AFNAFLKTLEEPP-------------A  137 (367)
T ss_pred             ccCCC-HHHHHHHHHHHhhccccCCcEEEEEeChhhcCHH-------------HHHHHHHHHhCCC-------------C
Confidence            01111 1223333333211111235579999999988755             6788888887521             1


Q ss_pred             CCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         161 NPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       161 ~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .  .++|.+++.       ...+.+++.+|+. .+.|+.++.+.
T Consensus       138 ~--~~~Il~~~~-------~~kl~~~l~sr~~-~v~~~~~~~~~  171 (367)
T PRK14970        138 H--AIFILATTE-------KHKIIPTILSRCQ-IFDFKRITIKD  171 (367)
T ss_pred             c--eEEEEEeCC-------cccCCHHHHhcce-eEecCCccHHH
Confidence            1  333333332       3578888998863 47787776554

>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional

Probab=99.38  E-value=9.2e-13  Score=118.71  Aligned_cols=130  Identities=18%  Similarity=0.283  Sum_probs=83.4

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCcc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~   82 (225)
                      .++|.+.+.+.+.+.+.            .......+|||+|++||||+++|++|++..   +.||+.++|..+...   
T Consensus       326 ~l~g~s~~~~~~~~~~~------------~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~---  390 (638)
T PRK11388        326 HMPQDSPQMRRLIHFGR------------QAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE---  390 (638)
T ss_pred             ceEECCHHHHHHHHHHH------------HHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH---
Confidence            35666665555554441            111334589999999999999999999876   468999999877421   


Q ss_pred             CCcHHHHHHHHHHhc--------chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          83 GDDVESIIQKLLHEC--------DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        83 g~~~~~~~~~~~~~~--------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                           .....+|...        .+.+..+.+++|||||++.+...             +|..|+++|+.....  ..++
T Consensus       391 -----~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l~~~-------------~Q~~Ll~~l~~~~~~--~~~~  450 (638)
T PRK11388        391 -----ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYLSPE-------------LQSALLQVLKTGVIT--RLDS  450 (638)
T ss_pred             -----HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhhCCHH-------------HHHHHHHHHhcCcEE--eCCC
Confidence                 0111122110        12234567899999999999988             899999999864322  1111


Q ss_pred             ccCCCCCCceeEEecCcc
Q psy5910         155 KKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~  172 (225)
                      ......+  +.+|+||+.
T Consensus       451 ~~~~~~~--~riI~~t~~  466 (638)
T PRK11388        451 RRLIPVD--VRVIATTTA  466 (638)
T ss_pred             CceEEee--EEEEEeccC
Confidence            1100112  778888877

>PRK13406 bchD magnesium chelatase subunit D; Provisional

Probab=99.38  E-value=8.4e-13  Score=116.44  Aligned_cols=142  Identities=6%  Similarity=0.024  Sum_probs=102.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcccccCccC-CcHHHHHHHHHH-hcchhhhhhCCCEEEEcchhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEAGYVG-DDVESIIQKLLH-ECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~-~~~~~~~~~~~~vl~iDEid~  116 (225)
                      ++|+|.|++||+||+++++++..+..  ||+.+..+...+. ..| -+++..+..-.. ...+.+..+.++|||+||++.
T Consensus        26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~-L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~  104 (584)
T PRK13406         26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDR-LLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAER  104 (584)
T ss_pred             ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHH-ccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCccc
Confidence            68999999999999999999999865  7877766555432 333 344443332211 224566777899999999999


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccc
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETN  196 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~  196 (225)
                      +.++             +++.|++.|+....++...+.......+  |++|+|.|..    .....+++++++||+.++.
T Consensus       105 ~~~~-------------~~~aLleame~G~vtIeR~G~s~~~Pa~--F~LIat~~~~----~~~~~L~~~lLDRf~l~v~  165 (584)
T PRK13406        105 LEPG-------------TAARLAAALDTGEVRLERDGLALRLPAR--FGLVALDEGA----EEDERAPAALADRLAFHLD  165 (584)
T ss_pred             CCHH-------------HHHHHHHHHhCCcEEEEECCcEEecCCC--cEEEecCCCh----hcccCCCHHhHhheEEEEE
Confidence            9988             8999999999877777555544333333  8888875541    0113599999999999966


Q ss_pred             cccccc
Q psy5910         197 FLEKLN  202 (225)
Q Consensus       197 ~~~~~~  202 (225)
                      ...+..
T Consensus       166 v~~~~~  171 (584)
T PRK13406        166 LDGLAL  171 (584)
T ss_pred             cCCCCh
Confidence            665554

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.36  E-value=3e-12  Score=113.94  Aligned_cols=149  Identities=20%  Similarity=0.298  Sum_probs=86.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe---ccCc------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV---DATS------   75 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~---~~~~------   75 (225)
                      +.|+||+++++.|...+...             .-...+||+||+|||||++|+.+++.+++....-   .|+.      
T Consensus        16 ~eiiGq~~~~~~L~~~i~~~-------------~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~   82 (585)
T PRK14950         16 AELVGQEHVVQTLRNAIAEG-------------RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRA   82 (585)
T ss_pred             HHhcCCHHHHHHHHHHHHhC-------------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHH
Confidence            35689999999998766211             0112468999999999999999999986422100   0000      


Q ss_pred             ccc---cCc---cC---CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910          76 FTE---AGY---VG---DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN  146 (225)
Q Consensus        76 ~~~---~~~---~g---~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~  146 (225)
                      +..   ..+   .+   .. ...++.+..............|++|||++.+...             .++.|++.|++..
T Consensus        83 i~~~~~~d~~~i~~~~~~~-vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~-------------a~naLLk~LEepp  148 (585)
T PRK14950         83 IAEGSAVDVIEMDAASHTS-VDDAREIIERVQFRPALARYKVYIIDEVHMLSTA-------------AFNALLKTLEEPP  148 (585)
T ss_pred             HhcCCCCeEEEEeccccCC-HHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHH-------------HHHHHHHHHhcCC
Confidence            000   000   00   11 1122333332211112245679999999999865             6899999998621


Q ss_pred             cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                                   .. .++++.+++        .+.+.+.+++|+. .+.|..++..
T Consensus       149 -------------~~-tv~Il~t~~--------~~kll~tI~SR~~-~i~f~~l~~~  182 (585)
T PRK14950        149 -------------PH-AIFILATTE--------VHKVPATILSRCQ-RFDFHRHSVA  182 (585)
T ss_pred             -------------CC-eEEEEEeCC--------hhhhhHHHHhccc-eeeCCCCCHH
Confidence                         11 033333333        3567788888863 3667666554

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=99.34  E-value=5.5e-12  Score=105.28  Aligned_cols=150  Identities=17%  Similarity=0.227  Sum_probs=90.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-------eEEe-cc---
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-------IIVV-DA---   73 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-------~~~~-~~---   73 (225)
                      ..++||+++++.+..++..-             .-+..+||+||+|+|||++|+.+|+.+.+.       .... .|   
T Consensus        23 ~~l~Gh~~a~~~L~~a~~~g-------------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c   89 (351)
T PRK09112         23 TRLFGHEEAEAFLAQAYREG-------------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS   89 (351)
T ss_pred             hhccCcHHHHHHHHHHHHcC-------------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC
Confidence            45799999999998877211             111247899999999999999999988551       1100 11   


Q ss_pred             Cc---cc---ccCc--c--------C-----CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChH
Q psy5910          74 TS---FT---EAGY--V--------G-----DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGE  132 (225)
Q Consensus        74 ~~---~~---~~~~--~--------g-----~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~  132 (225)
                      ..   +.   .+.+  .        |     -.+ ..++.+.+............|++|||+|.+...            
T Consensus        90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~v-d~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~------------  156 (351)
T PRK09112         90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITV-DEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN------------  156 (351)
T ss_pred             HHHHHHHcCCCCCEEEeecccccccccccccCCH-HHHHHHHHHhhhccccCCceEEEEEchhhcCHH------------
Confidence            00   00   0000  0        0     011 122222222211112235579999999999877            


Q ss_pred             HHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         133 GVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       133 ~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       .+++|++.||+..             .+. ++++.+ +.       +..+.+.+++|+ ..+.|+.++.++
T Consensus       157 -aanaLLk~LEEpp-------------~~~-~fiLit-~~-------~~~llptIrSRc-~~i~l~pl~~~~  204 (351)
T PRK09112        157 -AANAILKTLEEPP-------------ARA-LFILIS-HS-------SGRLLPTIRSRC-QPISLKPLDDDE  204 (351)
T ss_pred             -HHHHHHHHHhcCC-------------CCc-eEEEEE-CC-------hhhccHHHHhhc-cEEEecCCCHHH
Confidence             7899999998621             120 333333 33       457789999997 468888877765

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=99.34  E-value=2.5e-12  Score=106.29  Aligned_cols=154  Identities=20%  Similarity=0.237  Sum_probs=92.1

Q ss_pred             CCCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc-c
Q psy5910           1 MELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-A   79 (225)
Q Consensus         1 ~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~-~   79 (225)
                      |.+++. +||+++++.+...+..-             .-+..+||+||+|+|||++|+.+++.+.+....-+..++.. .
T Consensus         1 m~~~~i-~g~~~~~~~l~~~~~~~-------------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~   66 (313)
T PRK05564          1 MSFHTI-IGHENIKNRIKNSIIKN-------------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFK   66 (313)
T ss_pred             CChhhc-cCcHHHHHHHHHHHHcC-------------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEec
Confidence            555555 79999999998876110             11124579999999999999999998743211101111100 0


Q ss_pred             CccCCcH-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910          80 GYVGDDV-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP  158 (225)
Q Consensus        80 ~~~g~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~  158 (225)
                      .+.|... ...++.+.............-|++||++|.+...             .+++|++.||+-             
T Consensus        67 ~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~-------------a~naLLK~LEep-------------  120 (313)
T PRK05564         67 PINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQ-------------AQNAFLKTIEEP-------------  120 (313)
T ss_pred             cccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHH-------------HHHHHHHHhcCC-------------
Confidence            0111111 1123333332211112345679999999999866             799999999962             


Q ss_pred             CCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ..+  .++|.+++.       ++.+.+.+++|. ..+.|+.++.+.
T Consensus       121 p~~--t~~il~~~~-------~~~ll~TI~SRc-~~~~~~~~~~~~  156 (313)
T PRK05564        121 PKG--VFIILLCEN-------LEQILDTIKSRC-QIYKLNRLSKEE  156 (313)
T ss_pred             CCC--eEEEEEeCC-------hHhCcHHHHhhc-eeeeCCCcCHHH
Confidence            222  333333333       468888999996 357787776654

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=99.34  E-value=3.6e-12  Score=115.67  Aligned_cols=137  Identities=23%  Similarity=0.356  Sum_probs=86.6

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---   79 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---   79 (225)
                      .++|++.+++.+.+.+..            +.....+|||+|++|||||++|++|+...   +.+++.++|..+...   
T Consensus       377 ~liG~S~~~~~~~~~~~~------------~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~  444 (686)
T PRK15429        377 EIIGRSEAMYSVLKQVEM------------VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE  444 (686)
T ss_pred             ceeecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhh
Confidence            578888888777665521            11334589999999999999999999876   578999999876321   


Q ss_pred             -CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910          80 -GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP  158 (225)
Q Consensus        80 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~  158 (225)
                       .+.|..-.. .........+.+....++++||||++.+...             +|..|+.+|+.....  ..++....
T Consensus       445 ~~lfg~~~~~-~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~-------------~Q~~L~~~l~~~~~~--~~g~~~~~  508 (686)
T PRK15429        445 SDLFGHERGA-FTGASAQRIGRFELADKSSLFLDEVGDMPLE-------------LQPKLLRVLQEQEFE--RLGSNKII  508 (686)
T ss_pred             hhhcCccccc-ccccccchhhHHHhcCCCeEEEechhhCCHH-------------HHHHHHHHHHhCCEE--eCCCCCcc
Confidence             111110000 0000000012234457899999999999988             899999999864321  11111111


Q ss_pred             CCCCceeEEecCcc
Q psy5910         159 SQNPQVFNIDTTNI  172 (225)
Q Consensus       159 ~~~~~~~~i~ttn~  172 (225)
                      ..+  +.+|++|+.
T Consensus       509 ~~~--~RiI~~t~~  520 (686)
T PRK15429        509 QTD--VRLIAATNR  520 (686)
T ss_pred             cce--EEEEEeCCC
Confidence            122  788888877

>KOG0736|consensus

Probab=99.33  E-value=5.3e-12  Score=111.15  Aligned_cols=136  Identities=17%  Similarity=0.289  Sum_probs=102.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  120 (225)
                      ..+||+|+||||||++.+++|.+++.+++.++|.++... -.+ ..+..+...|.++    +...|+|||+-.+|-+..+
T Consensus       432 ~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-s~~-~~etkl~~~f~~a----~~~~pavifl~~~dvl~id  505 (953)
T KOG0736|consen  432 PSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-SAS-HTETKLQAIFSRA----RRCSPAVLFLRNLDVLGID  505 (953)
T ss_pred             eEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-ccc-hhHHHHHHHHHHH----hhcCceEEEEeccceeeec
Confidence            368899999999999999999999999999999888652 122 2355667777776    6779999999999999865


Q ss_pred             ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccc
Q psy5910         121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEK  200 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~  200 (225)
                      .++     ....++++.+-.+|..--          .+...+++++|++++.       .++|++.+++.|...|.++.+
T Consensus       506 ~dg-----ged~rl~~~i~~~ls~e~----------~~~~~~~~ivv~t~~s-------~~~lp~~i~~~f~~ei~~~~l  563 (953)
T KOG0736|consen  506 QDG-----GEDARLLKVIRHLLSNED----------FKFSCPPVIVVATTSS-------IEDLPADIQSLFLHEIEVPAL  563 (953)
T ss_pred             CCC-----chhHHHHHHHHHHHhccc----------ccCCCCceEEEEeccc-------cccCCHHHHHhhhhhccCCCC
Confidence            433     334456666666555100          0122233788888877       789999999999889999999


Q ss_pred             cccc
Q psy5910         201 LNNN  204 (225)
Q Consensus       201 ~~~~  204 (225)
                      ++++
T Consensus       564 se~q  567 (953)
T KOG0736|consen  564 SEEQ  567 (953)
T ss_pred             CHHH
Confidence            9887

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=99.33  E-value=1.1e-12  Score=95.66  Aligned_cols=132  Identities=23%  Similarity=0.352  Sum_probs=80.6

Q ss_pred             echhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC---CeEEeccCcccccCccCC
Q psy5910           8 IGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV---PIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         8 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~---~~~~~~~~~~~~~~~~g~   84 (225)
                      +|.+.+++.+.+.+.            .+.....+|+|+|++||||+++|+.|+...+.   +++.++|....       
T Consensus         1 vG~S~~~~~l~~~l~------------~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-------   61 (138)
T PF14532_consen    1 VGKSPAMRRLRRQLE------------RLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-------   61 (138)
T ss_dssp             --SCHHHHHHHHHHH------------HHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-------
T ss_pred             CCCCHHHHHHHHHHH------------HHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-------
Confidence            466666666666552            12234468999999999999999999998753   34444443321       


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                            ...+.       ...++++||+|+|.+.+.             .|..|+..|+...            ..+  +
T Consensus        62 ------~~~l~-------~a~~gtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~------------~~~--~  101 (138)
T PF14532_consen   62 ------AELLE-------QAKGGTLYLKNIDRLSPE-------------AQRRLLDLLKRQE------------RSN--V  101 (138)
T ss_dssp             ------HHHHH-------HCTTSEEEEECGCCS-HH-------------HHHHHHHHHHHCT------------TTT--S
T ss_pred             ------HHHHH-------HcCCCEEEECChHHCCHH-------------HHHHHHHHHHhcC------------CCC--e
Confidence                  22322       248899999999999988             7999999998521            122  5


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccc-cccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQE-TNFL  198 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~  198 (225)
                      .+|+++............+++.+..||... |..|
T Consensus       102 RlI~ss~~~l~~l~~~~~~~~~L~~~l~~~~i~lP  136 (138)
T PF14532_consen  102 RLIASSSQDLEELVEEGRFSPDLYYRLSQLEIHLP  136 (138)
T ss_dssp             EEEEEECC-CCCHHHHSTHHHHHHHHCSTCEEEE-
T ss_pred             EEEEEeCCCHHHHhhccchhHHHHHHhCCCEEeCC
Confidence            666666553311111234677777777544 4443

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=99.32  E-value=4.4e-12  Score=105.41  Aligned_cols=151  Identities=22%  Similarity=0.189  Sum_probs=88.5

Q ss_pred             cceeec-hhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeE--Eecc------
Q psy5910           4 DRHIIG-QHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPII--VVDA------   73 (225)
Q Consensus         4 ~~~i~G-~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~--~~~~------   73 (225)
                      -+.|+| |+.+++.+...+..              ....+ +||+||+|+||+++|+.+++.+.++-.  ...|      
T Consensus         4 ~~~i~~~q~~~~~~L~~~~~~--------------~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c   69 (329)
T PRK08058          4 WEQLTALQPVVVKMLQNSIAK--------------NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNC   69 (329)
T ss_pred             HHHHHhhHHHHHHHHHHHHHc--------------CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHH
Confidence            344566 99999999887621              11124 579999999999999999998743210  0000      


Q ss_pred             --------CcccccCccCCcH-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910          74 --------TSFTEAGYVGDDV-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        74 --------~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                              .++.-....|..+ ...++.+..............|++|||+|.+...             .+++|++.||+
T Consensus        70 ~~~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~-------------a~NaLLK~LEE  136 (329)
T PRK08058         70 KRIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTAS-------------AANSLLKFLEE  136 (329)
T ss_pred             HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHH-------------HHHHHHHHhcC
Confidence                    0110000111110 1122233222211111235679999999999876             79999999996


Q ss_pred             CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                   |..+  .++|.+++.       .+.+.+.+++|. ..+.|..++.+.
T Consensus       137 -------------Pp~~--~~~Il~t~~-------~~~ll~TIrSRc-~~i~~~~~~~~~  173 (329)
T PRK08058        137 -------------PSGG--TTAILLTEN-------KHQILPTILSRC-QVVEFRPLPPES  173 (329)
T ss_pred             -------------CCCC--ceEEEEeCC-------hHhCcHHHHhhc-eeeeCCCCCHHH
Confidence                         2222  333334433       468899999995 347777666553

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=99.32  E-value=7.8e-12  Score=112.40  Aligned_cols=159  Identities=17%  Similarity=0.189  Sum_probs=100.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcE-EEEcCCCCcHHHHHHHHHHHh----------CCCeEEecc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNI-LLVGPTGCGKTLMVKTLAKII----------NVPIIVVDA   73 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v-Ll~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~   73 (225)
                      +.|.|.++.++.|...+.....+          ..+.++ +++|+||||||++++.+.+.+          ...+++++|
T Consensus       755 D~LPhREeEIeeLasfL~paIkg----------sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC  824 (1164)
T PTZ00112        755 KYLPCREKEIKEVHGFLESGIKQ----------SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING  824 (1164)
T ss_pred             CcCCChHHHHHHHHHHHHHHHhc----------CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence            56788888888888877443322          122355 599999999999999998766          245788998


Q ss_pred             CcccccC---------------ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHH
Q psy5910          74 TSFTEAG---------------YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSL  138 (225)
Q Consensus        74 ~~~~~~~---------------~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~L  138 (225)
                      ..+....               ..|......+..+|....  -......||+|||+|.+...             .+..|
T Consensus       825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~--k~~r~v~IIILDEID~L~kK-------------~QDVL  889 (1164)
T PTZ00112        825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNK--KDNRNVSILIIDEIDYLITK-------------TQKVL  889 (1164)
T ss_pred             CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhh--cccccceEEEeehHhhhCcc-------------HHHHH
Confidence            5543210               011112233334433210  01123459999999999865             35667


Q ss_pred             HHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910         139 LKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       139 l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                      +.+++....          ...  ++.+|+.+|..    ..++.+++.+++||... |.|++++.++
T Consensus       890 YnLFR~~~~----------s~S--KLiLIGISNdl----DLperLdPRLRSRLg~eeIvF~PYTaEQ  940 (1164)
T PTZ00112        890 FTLFDWPTK----------INS--KLVLIAISNTM----DLPERLIPRCRSRLAFGRLVFSPYKGDE  940 (1164)
T ss_pred             HHHHHHhhc----------cCC--eEEEEEecCch----hcchhhhhhhhhccccccccCCCCCHHH
Confidence            777763110          111  27788888752    12456888999999765 9998888877

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.32  E-value=1.6e-11  Score=94.24  Aligned_cols=120  Identities=18%  Similarity=0.253  Sum_probs=75.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEeccCcccccCccCCcHHHHHHHHHHhc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP------------------------IIVVDATSFTEAGYVGDDVESIIQKLLHEC   97 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   97 (225)
                      .+||+||+|+|||++|+.+++.+...                        +..+....    +..  . ...++.+....
T Consensus        16 ~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~~~--~-~~~i~~i~~~~   88 (188)
T TIGR00678        16 AYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----QSI--K-VDQVRELVEFL   88 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc----CcC--C-HHHHHHHHHHH
Confidence            57899999999999999999987442                        11111100    001  1 12233333333


Q ss_pred             chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeecc
Q psy5910          98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG  177 (225)
Q Consensus        98 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~  177 (225)
                      ..........|++|||++.+...             .++.|+..|+...             ..  ..+|.+++.     
T Consensus        89 ~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le~~~-------------~~--~~~il~~~~-----  135 (188)
T TIGR00678        89 SRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLEEPP-------------PN--TLFILITPS-----  135 (188)
T ss_pred             ccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhcCCC-------------CC--eEEEEEECC-----
Confidence            22112345679999999999866             6889999998521             12  334444433     


Q ss_pred             CccccHHHHHHhhcccccccccccccc
Q psy5910         178 GAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       178 ~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                        ...+.+++++|+. .+.|+.++.++
T Consensus       136 --~~~l~~~i~sr~~-~~~~~~~~~~~  159 (188)
T TIGR00678       136 --PEKLLPTIRSRCQ-VLPFPPLSEEA  159 (188)
T ss_pred             --hHhChHHHHhhcE-EeeCCCCCHHH
Confidence              3588999999973 58888887664

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.31  E-value=5.3e-12  Score=106.50  Aligned_cols=161  Identities=19%  Similarity=0.223  Sum_probs=94.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEeccCc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---------VPIIVVDATS   75 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---------~~~~~~~~~~   75 (225)
                      +.++|.++.++.|...+.....+          ...++++++||||||||++++.+++.+.         ..+++++|..
T Consensus        15 ~~l~gRe~e~~~l~~~l~~~~~~----------~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~   84 (365)
T TIGR02928        15 DRIVHRDEQIEELAKALRPILRG----------SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI   84 (365)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHcC----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC
Confidence            46789999999998877332211          2235789999999999999999998662         4577788765


Q ss_pred             ccccC---------c---------cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHH
Q psy5910          76 FTEAG---------Y---------VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQS  137 (225)
Q Consensus        76 ~~~~~---------~---------~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~  137 (225)
                      .....         +         .+.+....+..++...   .....+.||+|||+|.+....          +.+...
T Consensus        85 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlvIDE~d~L~~~~----------~~~L~~  151 (365)
T TIGR02928        85 LDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKEL---NERGDSLIIVLDEIDYLVGDD----------DDLLYQ  151 (365)
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEECchhhhccCC----------cHHHHh
Confidence            43200         0         0111111222222211   012346799999999997321          012233


Q ss_pred             HHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccccc
Q psy5910         138 LLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLNNN  204 (225)
Q Consensus       138 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~~~  204 (225)
                      |+++.+...          .+..+  +.+|.++|.+..    .+.+++.+.+||.. .+.|++++.++
T Consensus       152 l~~~~~~~~----------~~~~~--v~lI~i~n~~~~----~~~l~~~~~s~~~~~~i~f~p~~~~e  203 (365)
T TIGR02928       152 LSRARSNGD----------LDNAK--VGVIGISNDLKF----RENLDPRVKSSLCEEEIIFPPYDAEE  203 (365)
T ss_pred             HhccccccC----------CCCCe--EEEEEEECCcch----HhhcCHHHhccCCcceeeeCCCCHHH
Confidence            333311100          01112  677777776321    24678888889864 48999888765

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.31  E-value=7.7e-12  Score=98.57  Aligned_cols=144  Identities=13%  Similarity=0.121  Sum_probs=84.7

Q ss_pred             Ccceee-chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910           3 LDRHII-GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE   78 (225)
Q Consensus         3 l~~~i~-G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~   78 (225)
                      +++.+. +...+++.+.+.+.              .....+++|+||+|||||++|+++++.+   +.+++++++..+..
T Consensus        14 ~~~~~~~~~~~~~~~l~~~~~--------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~   79 (226)
T TIGR03420        14 FDNFYAGGNAELLAALRQLAA--------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQ   79 (226)
T ss_pred             hcCcCcCCcHHHHHHHHHHHh--------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHH
Confidence            455553 35556677766441              1234689999999999999999999877   46778888766532


Q ss_pred             cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910          79 AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP  158 (225)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~  158 (225)
                      .          ....+...      ....+|+|||++.+....           ..++.|..+++....           
T Consensus        80 ~----------~~~~~~~~------~~~~lLvIDdi~~l~~~~-----------~~~~~L~~~l~~~~~-----------  121 (226)
T TIGR03420        80 A----------DPEVLEGL------EQADLVCLDDVEAIAGQP-----------EWQEALFHLYNRVRE-----------  121 (226)
T ss_pred             h----------HHHHHhhc------ccCCEEEEeChhhhcCCh-----------HHHHHHHHHHHHHHH-----------
Confidence            0          01222111      234699999999987541           025667777653210           


Q ss_pred             CCCCceeEEecCcceeeccCccccHHHHHHhhcc--cccccccccccc
Q psy5910         159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QETNFLEKLNNN  204 (225)
Q Consensus       159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~i~~~~~~~~~  204 (225)
                       ..  ..+|.|++...   .......+.+.+||.  ..+.++.++.++
T Consensus       122 -~~--~~iIits~~~~---~~~~~~~~~L~~r~~~~~~i~l~~l~~~e  163 (226)
T TIGR03420       122 -AG--GRLLIAGRAAP---AQLPLRLPDLRTRLAWGLVFQLPPLSDEE  163 (226)
T ss_pred             -cC--CeEEEECCCCh---HHCCcccHHHHHHHhcCeeEecCCCCHHH
Confidence             01  22333443310   000112277888875  457888887654

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=99.31  E-value=1.4e-11  Score=92.26  Aligned_cols=130  Identities=24%  Similarity=0.302  Sum_probs=80.1

Q ss_pred             chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC---------------------
Q psy5910           9 GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP---------------------   67 (225)
Q Consensus         9 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~---------------------   67 (225)
                      ||+++++.|...+...             .-+..+||+||+|+||+++|+.+++.+-..                     
T Consensus         1 gq~~~~~~L~~~~~~~-------------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~   67 (162)
T PF13177_consen    1 GQEEIIELLKNLIKSG-------------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNH   67 (162)
T ss_dssp             S-HHHHHHHHHHHHCT-------------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-C
T ss_pred             CcHHHHHHHHHHHHcC-------------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccC
Confidence            7888888888766211             111247899999999999999999988332                     


Q ss_pred             --eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          68 --IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        68 --~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                        ++.++.....    ..-. ...++.+.............-|++|||+|+|...             ++++|++.||+.
T Consensus        68 ~d~~~~~~~~~~----~~i~-i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~-------------a~NaLLK~LEep  129 (162)
T PF13177_consen   68 PDFIIIKPDKKK----KSIK-IDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEE-------------AQNALLKTLEEP  129 (162)
T ss_dssp             TTEEEEETTTSS----SSBS-HHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HH-------------HHHHHHHHHHST
T ss_pred             cceEEEeccccc----chhh-HHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHH-------------HHHHHHHHhcCC
Confidence              2222211110    0012 2334455554432222345679999999999987             899999999973


Q ss_pred             CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910         146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRI  191 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf  191 (225)
                                   ..+  .++|.+++.       .+.+.+.+++|.
T Consensus       130 -------------p~~--~~fiL~t~~-------~~~il~TI~SRc  153 (162)
T PF13177_consen  130 -------------PEN--TYFILITNN-------PSKILPTIRSRC  153 (162)
T ss_dssp             -------------TTT--EEEEEEES--------GGGS-HHHHTTS
T ss_pred             -------------CCC--EEEEEEECC-------hHHChHHHHhhc
Confidence                         223  444444444       568999999995

...

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=99.30  E-value=1.3e-11  Score=102.23  Aligned_cols=122  Identities=20%  Similarity=0.255  Sum_probs=79.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEeccCcccccCccCCcHHHHHHHHHHhc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP------------------------IIVVDATSFTEAGYVGDDVESIIQKLLHEC   97 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   97 (225)
                      .+||+||+|+||+++|+.+|+.+.+.                        ++.+.+..-.  .  ... ...++.+.+..
T Consensus        24 a~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~--~--~i~-id~iR~l~~~~   98 (328)
T PRK05707         24 AYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD--K--TIK-VDQVRELVSFV   98 (328)
T ss_pred             eeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC--C--CCC-HHHHHHHHHHH
Confidence            57899999999999999999998542                        1112111000  0  011 12234443333


Q ss_pred             chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeecc
Q psy5910          98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG  177 (225)
Q Consensus        98 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~  177 (225)
                      .........-|++|||+|+|...             ..++|++.||+             |..+  .++|.+|+.     
T Consensus        99 ~~~~~~~~~kv~iI~~a~~m~~~-------------aaNaLLK~LEE-------------Pp~~--~~fiL~t~~-----  145 (328)
T PRK05707         99 VQTAQLGGRKVVLIEPAEAMNRN-------------AANALLKSLEE-------------PSGD--TVLLLISHQ-----  145 (328)
T ss_pred             hhccccCCCeEEEECChhhCCHH-------------HHHHHHHHHhC-------------CCCC--eEEEEEECC-----
Confidence            21112345679999999999977             89999999997             2222  555555555     


Q ss_pred             CccccHHHHHHhhcccccccccccccc
Q psy5910         178 GAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       178 ~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                        ++.+.+.+++|+.. +.|+.|+.+.
T Consensus       146 --~~~ll~TI~SRc~~-~~~~~~~~~~  169 (328)
T PRK05707        146 --PSRLLPTIKSRCQQ-QACPLPSNEE  169 (328)
T ss_pred             --hhhCcHHHHhhcee-eeCCCcCHHH
Confidence              56899999999644 7888777664

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.30  E-value=1.1e-11  Score=105.62  Aligned_cols=160  Identities=18%  Similarity=0.195  Sum_probs=94.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~   79 (225)
                      +.++|.++.++.+...+.....+          ...++++++||||||||++++.+++.+     +..+++++|......
T Consensus        30 ~~l~~Re~e~~~l~~~l~~~~~~----------~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~   99 (394)
T PRK00411         30 ENLPHREEQIEELAFALRPALRG----------SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTR   99 (394)
T ss_pred             CCCCCHHHHHHHHHHHHHHHhCC----------CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCH
Confidence            56788898888887776332211          223578999999999999999999877     466888888644210


Q ss_pred             ----------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910          80 ----------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE  143 (225)
Q Consensus        80 ----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~  143 (225)
                                      ...+......+..+.+..   -....+.||+|||+|.+.....         ......|++.++
T Consensus       100 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~viviDE~d~l~~~~~---------~~~l~~l~~~~~  167 (394)
T PRK00411        100 YAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYL---DERDRVLIVALDDINYLFEKEG---------NDVLYSLLRAHE  167 (394)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCEEEEEECCHhHhhccCC---------chHHHHHHHhhh
Confidence                            001112222222222111   0123457999999999982210         114455555554


Q ss_pred             cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910         144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                      ...            ..+  +.+|.++|..-    ..+.+++.+.+||... |.|++++.++
T Consensus       168 ~~~------------~~~--v~vI~i~~~~~----~~~~l~~~~~s~~~~~~i~f~py~~~e  211 (394)
T PRK00411        168 EYP------------GAR--IGVIGISSDLT----FLYILDPRVKSVFRPEEIYFPPYTADE  211 (394)
T ss_pred             ccC------------CCe--EEEEEEECCcc----hhhhcCHHHHhcCCcceeecCCCCHHH
Confidence            321            112  66666665521    1234677788888544 8998888776

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=99.30  E-value=2.4e-11  Score=87.68  Aligned_cols=76  Identities=26%  Similarity=0.427  Sum_probs=50.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCC---eEEeccCcccccC------------ccCCcHHHHHHHHHHhcchhhhhhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVP---IIVVDATSFTEAG------------YVGDDVESIIQKLLHECDYDVELAE  105 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~---~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~~~  105 (225)
                      .+++|+||||||||++++.++..+...   ++.+++.......            .............+..+    ....
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~   78 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA----RKLK   78 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH----HhcC
Confidence            478899999999999999999999765   7888776543210            01111122233333332    2233


Q ss_pred             CCEEEEcchhhhccc
Q psy5910         106 QSIIYIDEIDKISKK  120 (225)
Q Consensus       106 ~~vl~iDEid~l~~~  120 (225)
                      +.++++||++.+...
T Consensus        79 ~~viiiDei~~~~~~   93 (148)
T smart00382       79 PDVLILDEITSLLDA   93 (148)
T ss_pred             CCEEEEECCcccCCH
Confidence            599999999999866

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=99.30  E-value=7.2e-12  Score=103.69  Aligned_cols=142  Identities=27%  Similarity=0.309  Sum_probs=84.9

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC-----CeEEeccCcccccC
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV-----PIIVVDATSFTEAG   80 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~~~~   80 (225)
                      .++|++++++.+...+..              ...++++|+||||||||++++++++.+..     .++.+++.+..   
T Consensus        18 ~~~g~~~~~~~l~~~i~~--------------~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~---   80 (319)
T PRK00440         18 EIVGQEEIVERLKSYVKE--------------KNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER---   80 (319)
T ss_pred             HhcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc---
Confidence            368999999999887621              11236899999999999999999998733     23333332211   


Q ss_pred             ccCCc-HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          81 YVGDD-VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        81 ~~g~~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                        +.+ ....+.......  ........+++|||++.+...             .++.|+..++...             
T Consensus        81 --~~~~~~~~i~~~~~~~--~~~~~~~~vviiDe~~~l~~~-------------~~~~L~~~le~~~-------------  130 (319)
T PRK00440         81 --GIDVIRNKIKEFARTA--PVGGAPFKIIFLDEADNLTSD-------------AQQALRRTMEMYS-------------  130 (319)
T ss_pred             --chHHHHHHHHHHHhcC--CCCCCCceEEEEeCcccCCHH-------------HHHHHHHHHhcCC-------------
Confidence              111 111111111111  011124569999999998755             5778888887522             


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ..  ..+|.++|.       ...+.+++.+|+. .+.|+.++.++
T Consensus       131 ~~--~~lIl~~~~-------~~~l~~~l~sr~~-~~~~~~l~~~e  165 (319)
T PRK00440        131 QN--TRFILSCNY-------SSKIIDPIQSRCA-VFRFSPLKKEA  165 (319)
T ss_pred             CC--CeEEEEeCC-------ccccchhHHHHhh-eeeeCCCCHHH
Confidence            11  233333333       3466777888864 37777776654

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=99.29  E-value=1.7e-11  Score=102.89  Aligned_cols=149  Identities=13%  Similarity=0.196  Sum_probs=91.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCCeE-------------E
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVPII-------------V   70 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~~~-------------~   70 (225)
                      +.|+||+++++.|..++..-              ... .+||+||+|+||+++|.++|+.+-+.-.             .
T Consensus        19 ~~iiGq~~~~~~L~~~~~~~--------------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~   84 (365)
T PRK07471         19 TALFGHAAAEAALLDAYRSG--------------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLA   84 (365)
T ss_pred             hhccChHHHHHHHHHHHHcC--------------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCcccccccccc
Confidence            46799999999998877211              112 4789999999999999999998833110             0


Q ss_pred             e--cc-----------Cccc--ccCccC--------CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCC
Q psy5910          71 V--DA-----------TSFT--EAGYVG--------DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGK  127 (225)
Q Consensus        71 ~--~~-----------~~~~--~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~  127 (225)
                      +  .|           .++.  ...+..        -.+ ..++.+.+..........+.|++|||+|.+...       
T Consensus        85 ~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~V-dqiR~l~~~~~~~~~~~~~kVviIDead~m~~~-------  156 (365)
T PRK07471         85 IDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITV-DEVRELISFFGLTAAEGGWRVVIVDTADEMNAN-------  156 (365)
T ss_pred             CCCCChHHHHHHccCCCCeEEEecccccccccccccccH-HHHHHHHHHhCcCcccCCCEEEEEechHhcCHH-------
Confidence            0  00           0000  000001        011 123343333322223346679999999999876       


Q ss_pred             CCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         128 DVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       128 ~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                            .++.|++.|++.             ..+  .++|.+|+.       ++.+.+.+++|+ ..+.|+.++.+.
T Consensus       157 ------aanaLLK~LEep-------------p~~--~~~IL~t~~-------~~~llpti~SRc-~~i~l~~l~~~~  204 (365)
T PRK07471        157 ------AANALLKVLEEP-------------PAR--SLFLLVSHA-------PARLLPTIRSRC-RKLRLRPLAPED  204 (365)
T ss_pred             ------HHHHHHHHHhcC-------------CCC--eEEEEEECC-------chhchHHhhccc-eEEECCCCCHHH
Confidence                  789999999862             122  334444444       457888888885 347777777665

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=99.29  E-value=1.2e-11  Score=110.22  Aligned_cols=149  Identities=21%  Similarity=0.262  Sum_probs=88.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec---cC-------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD---AT-------   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~---~~-------   74 (225)
                      +.|+||+++++.|..++..-             .-...+||+||+|+|||++|+.+|+.+.+.-....   |+       
T Consensus        17 ~~viGq~~~~~~L~~~i~~~-------------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~   83 (614)
T PRK14971         17 ESVVGQEALTTTLKNAIATN-------------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVA   83 (614)
T ss_pred             HHhcCcHHHHHHHHHHHHcC-------------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHH
Confidence            35689999999998877211             01124789999999999999999998864211000   00       


Q ss_pred             -------cccccCccCC--cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          75 -------SFTEAGYVGD--DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        75 -------~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                             ++.  .+.+.  .....++.+...+....-....-|++|||++.+...             .++.|++.|+..
T Consensus        84 ~~~~~~~n~~--~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~-------------a~naLLK~LEep  148 (614)
T PRK14971         84 FNEQRSYNIH--ELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQA-------------AFNAFLKTLEEP  148 (614)
T ss_pred             HhcCCCCceE--EecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHH-------------HHHHHHHHHhCC
Confidence                   000  01111  001223333332211111235679999999999865             789999999962


Q ss_pred             CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .             ..  .++|.+++.       ...+-+++++|+ ..+.|..++.+.
T Consensus       149 p-------------~~--tifIL~tt~-------~~kIl~tI~SRc-~iv~f~~ls~~e  184 (614)
T PRK14971        149 P-------------SY--AIFILATTE-------KHKILPTILSRC-QIFDFNRIQVAD  184 (614)
T ss_pred             C-------------CC--eEEEEEeCC-------chhchHHHHhhh-heeecCCCCHHH
Confidence            1             22  333333332       347888999985 337777776553

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=99.27  E-value=3.6e-12  Score=109.90  Aligned_cols=139  Identities=26%  Similarity=0.356  Sum_probs=91.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeE-E-e------ccCcc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPII-V-V------DATSF   76 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~-~-~------~~~~~   76 (225)
                      +.++||++++..|..++....             -....||.||-|||||++||.+|+.+++.-. . -      .|..+
T Consensus        16 ~evvGQe~v~~~L~nal~~~r-------------i~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I   82 (515)
T COG2812          16 DDVVGQEHVVKTLSNALENGR-------------IAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI   82 (515)
T ss_pred             HHhcccHHHHHHHHHHHHhCc-------------chhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence            345999999999988872221             1236789999999999999999999976521 0 0      01111


Q ss_pred             cccC------ccCC--cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910          77 TEAG------YVGD--DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS  148 (225)
Q Consensus        77 ~~~~------~~g~--~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~  148 (225)
                      ....      +.+.  ..-.-++.+.+...........-|.+|||++-+...             ..++||+-||+    
T Consensus        83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~-------------afNALLKTLEE----  145 (515)
T COG2812          83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQ-------------AFNALLKTLEE----  145 (515)
T ss_pred             hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHH-------------HHHHHhccccc----
Confidence            1100      1100  012235555555555555667889999999999977             89999999986    


Q ss_pred             ccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910         149 ITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRI  191 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf  191 (225)
                               |..+. +++.+||+.        ..++..+++|+
T Consensus       146 ---------PP~hV-~FIlATTe~--------~Kip~TIlSRc  170 (515)
T COG2812         146 ---------PPSHV-KFILATTEP--------QKIPNTILSRC  170 (515)
T ss_pred             ---------CccCe-EEEEecCCc--------CcCchhhhhcc
Confidence                     33331 445555544        68999999974

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=99.26  E-value=2.2e-11  Score=100.34  Aligned_cols=151  Identities=15%  Similarity=0.178  Sum_probs=92.9

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCe----------EEecc
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPI----------IVVDA   73 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~----------~~~~~   73 (225)
                      .+.|+||+++++.+...+..-             .-...+||+||+|+||+++|.++|+.+-+.-          ...+.
T Consensus         3 f~~iiGq~~~~~~L~~~i~~~-------------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~h   69 (314)
T PRK07399          3 FANLIGQPLAIELLTAAIKQN-------------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNH   69 (314)
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCC
Confidence            456899999999999877211             1123788999999999999999999873321          01111


Q ss_pred             Cccc--ccC--ccCCcH-------------------HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCC
Q psy5910          74 TSFT--EAG--YVGDDV-------------------ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVS  130 (225)
Q Consensus        74 ~~~~--~~~--~~g~~~-------------------~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~  130 (225)
                      .++.  .+.  ..|...                   ...++.+.+............|++||++|+|...          
T Consensus        70 PDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~----------  139 (314)
T PRK07399         70 PDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEA----------  139 (314)
T ss_pred             CCEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHH----------
Confidence            1111  000  001100                   0123333333222222346789999999999876          


Q ss_pred             hHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         131 GEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       131 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                         ..++|++.||+-             . +. ++++.|+ .       ++.+.+.+++|. ..+.|+.++.+.
T Consensus       140 ---aaNaLLK~LEEP-------------p-~~-~fILi~~-~-------~~~Ll~TI~SRc-q~i~f~~l~~~~  186 (314)
T PRK07399        140 ---AANALLKTLEEP-------------G-NG-TLILIAP-S-------PESLLPTIVSRC-QIIPFYRLSDEQ  186 (314)
T ss_pred             ---HHHHHHHHHhCC-------------C-CC-eEEEEEC-C-------hHhCcHHHHhhc-eEEecCCCCHHH
Confidence               789999999962             2 21 3333333 3       578999999995 447787777654

>KOG0735|consensus

Probab=99.26  E-value=1.3e-11  Score=107.97  Aligned_cols=142  Identities=20%  Similarity=0.313  Sum_probs=95.2

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE  113 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE  113 (225)
                      ...+++||+||+|||||.|++++++++.    +.+..++|+.+...+  -+.+.+.+..+|..+    -..+|+||++|+
T Consensus       429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~--~e~iQk~l~~vfse~----~~~~PSiIvLDd  502 (952)
T KOG0735|consen  429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSS--LEKIQKFLNNVFSEA----LWYAPSIIVLDD  502 (952)
T ss_pred             cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchh--HHHHHHHHHHHHHHH----HhhCCcEEEEcc
Confidence            4567999999999999999999999984    346678888775422  234455666666665    567999999999


Q ss_pred             hhhhcccccccCC-CCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--h
Q psy5910         114 IDKISKKTDVVSG-KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--R  190 (225)
Q Consensus       114 id~l~~~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--R  190 (225)
                      +|.+....+...+ .....++.-..|.+++..+.            ..+..+.+|++.+.       ...+++-+-+  +
T Consensus       503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~------------~~~~~ia~Iat~qe-------~qtl~~~L~s~~~  563 (952)
T KOG0735|consen  503 LDCLASASSNENGQDGVVSERLAAFLNQVIKIYL------------KRNRKIAVIATGQE-------LQTLNPLLVSPLL  563 (952)
T ss_pred             hhhhhccCcccCCcchHHHHHHHHHHHHHHHHHH------------ccCcEEEEEEechh-------hhhcChhhcCccc
Confidence            9999873222211 12222223333334444322            11222677777776       5677887776  7


Q ss_pred             cccccccccccccc
Q psy5910         191 INQETNFLEKLNNN  204 (225)
Q Consensus       191 f~~~i~~~~~~~~~  204 (225)
                      |+..+..+.|...+
T Consensus       564 Fq~~~~L~ap~~~~  577 (952)
T KOG0735|consen  564 FQIVIALPAPAVTR  577 (952)
T ss_pred             eEEEEecCCcchhH
Confidence            88889999998866

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4.1e-11  Score=107.32  Aligned_cols=171  Identities=22%  Similarity=0.265  Sum_probs=112.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~   74 (225)
                      +-++|.++.++++.+.+.              ...+.+-+|+|+||+|||.++..+|...          +..++.++.+
T Consensus       170 DPvIGRd~EI~r~iqIL~--------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g  235 (786)
T COG0542         170 DPVIGRDEEIRRTIQILS--------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLG  235 (786)
T ss_pred             CCCcChHHHHHHHHHHHh--------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHH
Confidence            346899999998888662              1334577789999999999999998766          4557777776


Q ss_pred             ccc-ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          75 SFT-EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        75 ~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      .+. ..+|.|+- +..+..+.+..    ....+.|+||||++.+-......++    .-++-+.|...|..+.       
T Consensus       236 ~LvAGakyRGeF-EeRlk~vl~ev----~~~~~vILFIDEiHtiVGAG~~~G~----a~DAaNiLKPaLARGe-------  299 (786)
T COG0542         236 SLVAGAKYRGEF-EERLKAVLKEV----EKSKNVILFIDEIHTIVGAGATEGG----AMDAANLLKPALARGE-------  299 (786)
T ss_pred             HHhccccccCcH-HHHHHHHHHHH----hcCCCeEEEEechhhhcCCCccccc----ccchhhhhHHHHhcCC-------
Confidence            663 34687764 66677776654    4455899999999999866432111    1236688888887543       


Q ss_pred             cccCCCCCCceeEEecCcce-eeccCccccHHHHHHhhcccccccccccccc-chhcccCChhHHHHc
Q psy5910         154 EKKNPSQNPQVFNIDTTNIL-FIAGGAFSGIENFIINRINQETNFLEKLNNN-YNLICETNTEDLINF  219 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~-~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~-~~l~~~~~~~~l~~~  219 (225)
                                ..+|++|..- +   ..+=+-|+|+-|||.. |....|+.+. -.+++-+.+..-.++
T Consensus       300 ----------L~~IGATT~~EY---Rk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH  353 (786)
T COG0542         300 ----------LRCIGATTLDEY---RKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERYEAHH  353 (786)
T ss_pred             ----------eEEEEeccHHHH---HHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHHHHcc
Confidence                      6666666440 0   0012578999999954 5555565544 444444444443333

>PRK08084 DNA replication initiation factor; Provisional

Probab=99.22  E-value=6.2e-11  Score=94.08  Aligned_cols=121  Identities=13%  Similarity=0.100  Sum_probs=67.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      ++++|+||||||||+|++++++.+.   ..+.+++......          ....+.+..      ..-.+++|||++.+
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~----------~~~~~~~~~------~~~dlliiDdi~~~  109 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW----------FVPEVLEGM------EQLSLVCIDNIECI  109 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh----------hhHHHHHHh------hhCCEEEEeChhhh
Confidence            4788999999999999999998763   3344444433211          011111111      12358999999998


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc--ccc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QET  195 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~i  195 (225)
                      ..+.           ..+..|..++.....           ...  ..++.|++...-.   ...+.+.+++|+.  ..+
T Consensus       110 ~~~~-----------~~~~~lf~l~n~~~e-----------~g~--~~li~ts~~~p~~---l~~~~~~L~SRl~~g~~~  162 (235)
T PRK08084        110 AGDE-----------LWEMAIFDLYNRILE-----------SGR--TRLLITGDRPPRQ---LNLGLPDLASRLDWGQIY  162 (235)
T ss_pred             cCCH-----------HHHHHHHHHHHHHHH-----------cCC--CeEEEeCCCChHH---cCcccHHHHHHHhCCcee
Confidence            7541           133444444442110           000  2333344432100   1236789999986  447


Q ss_pred             ccccccccc
Q psy5910         196 NFLEKLNNN  204 (225)
Q Consensus       196 ~~~~~~~~~  204 (225)
                      .+.+|+.+.
T Consensus       163 ~l~~~~~~~  171 (235)
T PRK08084        163 KLQPLSDEE  171 (235)
T ss_pred             eecCCCHHH
Confidence            777776544

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=99.22  E-value=1.6e-11  Score=106.42  Aligned_cols=129  Identities=15%  Similarity=0.295  Sum_probs=76.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID  115 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid  115 (225)
                      .+++|+||||||||+|++++++.+     +..++++++..+.. .+...-.......+..      ......+|+|||++
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~dlLiiDDi~  221 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN-DFVNALRNNTMEEFKE------KYRSVDVLLIDDIQ  221 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHHHHcCcHHHHHH------HHhcCCEEEEehhh
Confidence            468899999999999999999987     45577777766532 1111000000011111      11256799999999


Q ss_pred             hhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc--
Q psy5910         116 KISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ--  193 (225)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~--  193 (225)
                      .+..+.           ..+..|+..++.....           ..  .+++.+...+.    ....+++.+.+||..  
T Consensus       222 ~l~~~~-----------~~~~~l~~~~n~l~~~-----------~~--~iiits~~~p~----~l~~l~~~l~SRl~~gl  273 (450)
T PRK00149        222 FLAGKE-----------RTQEEFFHTFNALHEA-----------GK--QIVLTSDRPPK----ELPGLEERLRSRFEWGL  273 (450)
T ss_pred             hhcCCH-----------HHHHHHHHHHHHHHHC-----------CC--cEEEECCCCHH----HHHHHHHHHHhHhcCCe
Confidence            987542           2456677766542110           01  23333332210    012378999999964  


Q ss_pred             ccccccccccc
Q psy5910         194 ETNFLEKLNNN  204 (225)
Q Consensus       194 ~i~~~~~~~~~  204 (225)
                      .+.+..|+.+.
T Consensus       274 ~v~i~~pd~~~  284 (450)
T PRK00149        274 TVDIEPPDLET  284 (450)
T ss_pred             eEEecCCCHHH
Confidence            48888888765

>PRK06893 DNA replication initiation factor; Validated

Probab=99.21  E-value=7.9e-11  Score=93.11  Aligned_cols=118  Identities=9%  Similarity=0.176  Sum_probs=68.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      +.++|+||||||||+|++++++.+   +....+++.....          ......+...      .+..+++|||++.+
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~----------~~~~~~~~~~------~~~dlLilDDi~~~  103 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ----------YFSPAVLENL------EQQDLVCLDDLQAV  103 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh----------hhhHHHHhhc------ccCCEEEEeChhhh
Confidence            357899999999999999999886   3344444442211          0011222211      24579999999998


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcccc---HHHHHHhhcc--
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSG---IENFIINRIN--  192 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~---l~~al~~Rf~--  192 (225)
                      ....           ..+..|+.+++....            ... .+++.|+|.      .+..   ..+.+.+|+.  
T Consensus       104 ~~~~-----------~~~~~l~~l~n~~~~------------~~~-~illits~~------~p~~l~~~~~~L~sRl~~g  153 (229)
T PRK06893        104 IGNE-----------EWELAIFDLFNRIKE------------QGK-TLLLISADC------SPHALSIKLPDLASRLTWG  153 (229)
T ss_pred             cCCh-----------HHHHHHHHHHHHHHH------------cCC-cEEEEeCCC------ChHHccccchhHHHHHhcC
Confidence            7542           134467776664210            010 233334433      1323   3478888875  


Q ss_pred             cccccccccccc
Q psy5910         193 QETNFLEKLNNN  204 (225)
Q Consensus       193 ~~i~~~~~~~~~  204 (225)
                      ..+.++.|+.+.
T Consensus       154 ~~~~l~~pd~e~  165 (229)
T PRK06893        154 EIYQLNDLTDEQ  165 (229)
T ss_pred             CeeeCCCCCHHH
Confidence            346677777665

>PRK13765 ATP-dependent protease Lon; Provisional

Probab=99.20  E-value=7.6e-11  Score=104.96  Aligned_cols=48  Identities=21%  Similarity=0.571  Sum_probs=40.1

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      +-+.|+||+++++.|..++                ...++++|+||||||||++|+++++.++.
T Consensus        29 ~~~~vigq~~a~~~L~~~~----------------~~~~~~l~~G~~G~GKttla~~l~~~l~~   76 (637)
T PRK13765         29 LIDQVIGQEHAVEVIKKAA----------------KQRRHVMMIGSPGTGKSMLAKAMAELLPK   76 (637)
T ss_pred             cHHHcCChHHHHHHHHHHH----------------HhCCeEEEECCCCCcHHHHHHHHHHHcCh
Confidence            3456899999999998877                33458999999999999999999988753

>PRK08727 hypothetical protein; Validated

Probab=99.18  E-value=1.2e-10  Score=92.27  Aligned_cols=145  Identities=13%  Similarity=0.133  Sum_probs=84.1

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~   78 (225)
                      .+++.++|.+.+...+.....   +           .....++|+||+|||||+|++++++.+   +....+++..... 
T Consensus        17 ~f~~f~~~~~n~~~~~~~~~~---~-----------~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~-   81 (233)
T PRK08727         17 RFDSYIAAPDGLLAQLQALAA---G-----------QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA-   81 (233)
T ss_pred             ChhhccCCcHHHHHHHHHHHh---c-----------cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh-
Confidence            456677777766665543220   0           112358899999999999999998776   4445555543321 


Q ss_pred             cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCC
Q psy5910          79 AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNP  158 (225)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~  158 (225)
                               ..+...++.      .....+|+|||++.+....           ..+..++.+++....           
T Consensus        82 ---------~~~~~~~~~------l~~~dlLiIDDi~~l~~~~-----------~~~~~lf~l~n~~~~-----------  124 (233)
T PRK08727         82 ---------GRLRDALEA------LEGRSLVALDGLESIAGQR-----------EDEVALFDFHNRARA-----------  124 (233)
T ss_pred             ---------hhHHHHHHH------HhcCCEEEEeCcccccCCh-----------HHHHHHHHHHHHHHH-----------
Confidence                     111122221      1345699999999887542           134566666653210           


Q ss_pred             CCCCceeEEecCcceeeccCccccHHHHHHhhcccc--cccccccccc
Q psy5910         159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFLEKLNNN  204 (225)
Q Consensus       159 ~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~~~~~~~  204 (225)
                       ..  ..+|.|+|...   .....+.+.+++||...  +.++.|+.+.
T Consensus       125 -~~--~~vI~ts~~~p---~~l~~~~~dL~SRl~~~~~~~l~~~~~e~  166 (233)
T PRK08727        125 -AG--ITLLYTARQMP---DGLALVLPDLRSRLAQCIRIGLPVLDDVA  166 (233)
T ss_pred             -cC--CeEEEECCCCh---hhhhhhhHHHHHHHhcCceEEecCCCHHH
Confidence             01  34555555411   01123579999998444  7888887765

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=99.18  E-value=7.8e-11  Score=95.90  Aligned_cols=65  Identities=26%  Similarity=0.465  Sum_probs=47.0

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCccc
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFT   77 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~   77 (225)
                      .+-++||.+|.+..--.+.....+         ....+++|+.||||||||.||-.||+++|  .||..++++.+-
T Consensus        38 ~dG~VGQ~~AReAaGvIv~mik~g---------k~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiY  104 (450)
T COG1224          38 GDGLVGQEEAREAAGVIVKMIKQG---------KMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIY  104 (450)
T ss_pred             CCcccchHHHHHhhhHHHHHHHhC---------cccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceee
Confidence            355799998876643322111111         13456899999999999999999999995  789888887763

>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]

Probab=99.17  E-value=8.2e-11  Score=95.91  Aligned_cols=110  Identities=23%  Similarity=0.364  Sum_probs=80.4

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcc------hhhhhhCCCE
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECD------YDVELAEQSI  108 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~v  108 (225)
                      .-..++||.|++||||-.+|++.+...   ..||+.+||+.+-+.        ..-..+|..+.      +..+.+.++.
T Consensus       225 mlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~--------~aEsElFG~apg~~gk~GffE~AngGT  296 (511)
T COG3283         225 MLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPED--------AAESELFGHAPGDEGKKGFFEQANGGT  296 (511)
T ss_pred             ccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchh--------HhHHHHhcCCCCCCCccchhhhccCCe
Confidence            334689999999999999999998777   678999999877431        11123333332      2344568899


Q ss_pred             EEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910         109 IYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       109 l~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      +|+|||..+.+.             +|..|+++|....+  ...+....-+.+  +.+|++|..
T Consensus       297 VlLDeIgEmSp~-------------lQaKLLRFL~DGtF--RRVGee~Ev~vd--VRVIcatq~  343 (511)
T COG3283         297 VLLDEIGEMSPR-------------LQAKLLRFLNDGTF--RRVGEDHEVHVD--VRVICATQV  343 (511)
T ss_pred             EEeehhhhcCHH-------------HHHHHHHHhcCCce--eecCCcceEEEE--EEEEecccc
Confidence            999999999998             89999999976433  334443333444  899999988

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=99.17  E-value=8.9e-11  Score=96.61  Aligned_cols=66  Identities=23%  Similarity=0.423  Sum_probs=44.5

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcccc
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTE   78 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~~   78 (225)
                      .+-++||.++.+.+--.+.....+.         ...+.+||.||||||||.+|-++|+++|  .||..++++++.+
T Consensus        23 ~~GlVGQ~~AReAagiiv~mIk~~K---------~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS   90 (398)
T PF06068_consen   23 ADGLVGQEKAREAAGIIVDMIKEGK---------IAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYS   90 (398)
T ss_dssp             ETTEES-HHHHHHHHHHHHHHHTT-----------TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-B
T ss_pred             cccccChHHHHHHHHHHHHHHhccc---------ccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeee
Confidence            3567999998877654332222111         3456899999999999999999999995  7888888876643

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PRK10923 glnG nitrogen regulation protein NR(I); Provisional

Probab=99.15  E-value=7.6e-11  Score=102.77  Aligned_cols=109  Identities=21%  Similarity=0.335  Sum_probs=73.2

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhc-----------chhhhhh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC-----------DYDVELA  104 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----------~~~~~~~  104 (225)
                      ...++++.|++||||+++|++++...   +.+|+.++|..+...        ..-..+|...           .+.+...
T Consensus       160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~--------~~~~~lfg~~~g~~~~~~~~~~g~~~~a  231 (469)
T PRK10923        160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD--------LIESELFGHEKGAFTGANTIRQGRFEQA  231 (469)
T ss_pred             cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH--------HHHHHhcCCCCCCCCCCCcCCCCCeeEC
Confidence            34579999999999999999999987   468999999876321        1111122111           1223455


Q ss_pred             CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910         105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      .++.+||||++.+...             .|..|+++|+.....  ..++......+  +.+|+||+.
T Consensus       232 ~~Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~--~~~~~~~~~~~--~rii~~~~~  282 (469)
T PRK10923        232 DGGTLFLDEIGDMPLD-------------VQTRLLRVLADGQFY--RVGGYAPVKVD--VRIIAATHQ  282 (469)
T ss_pred             CCCEEEEeccccCCHH-------------HHHHHHHHHhcCcEE--eCCCCCeEEee--EEEEEeCCC
Confidence            7889999999999988             899999999864322  11111111112  677777776

>KOG1969|consensus

Probab=99.14  E-value=1.1e-10  Score=102.41  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=84.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT  121 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~  121 (225)
                      -+||+||||-||||||+.||+..|..++.+|+++-..    +..+...+..+.+.....-+..+|.+|++||||-..+. 
T Consensus       328 ilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt----~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~~~-  402 (877)
T KOG1969|consen  328 ILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERT----APMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAPRA-  402 (877)
T ss_pred             eEEeecCCCCChhHHHHHHHHhcCceEEEeccccccc----HHHHHHHHHHHHhhccccccCCCcceEEEecccCCcHH-
Confidence            4559999999999999999999999999999988643    22333334444333322223358899999999987755 


Q ss_pred             cccCCCCCChHHHHHHHHHHHhcCCcCc--cccc--cccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hccccc
Q psy5910         122 DVVSGKDVSGEGVQQSLLKLIEGVNLSI--TSLA--EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQET  195 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~--~~~~--~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i  195 (225)
                                  +...++.++..-....  ...+  +++....    .  .--.+++||-|| +-.-||++.  -|...|
T Consensus       403 ------------~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr----~--~~L~RPIICICN-dLYaPaLR~Lr~~A~ii  463 (877)
T KOG1969|consen  403 ------------AVDVILSLVKATNKQATGKQAKKDKKRKKKR----S--KLLTRPIICICN-DLYAPALRPLRPFAEII  463 (877)
T ss_pred             ------------HHHHHHHHHHhhcchhhcCcccchhhhhhhc----c--ccccCCEEEEec-CccchhhhhcccceEEE
Confidence                        6788888886221111  1110  0000000    0  111233444443 134666665  466668


Q ss_pred             ccccccccc
Q psy5910         196 NFLEKLNNN  204 (225)
Q Consensus       196 ~~~~~~~~~  204 (225)
                      .|..|....
T Consensus       464 ~f~~p~~s~  472 (877)
T KOG1969|consen  464 AFVPPSQSR  472 (877)
T ss_pred             EecCCChhH
Confidence            898888764

>KOG2170|consensus

Probab=99.14  E-value=5.1e-11  Score=94.92  Aligned_cols=118  Identities=22%  Similarity=0.354  Sum_probs=77.9

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC-----CCeEEeccCcc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSF   76 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~-----~~~~~~~~~~~   76 (225)
                      |++.+.||+-+++.+..++..++....        ..++-+| |+|+|||||+.+++.||+.+-     .+++..=-+..
T Consensus        80 L~~~lfGQHla~~~Vv~alk~~~~n~~--------p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~  151 (344)
T KOG2170|consen   80 LARALFGQHLAKQLVVNALKSHWANPN--------PRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATL  151 (344)
T ss_pred             HHHHhhchHHHHHHHHHHHHHHhcCCC--------CCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhc
Confidence            567899999999999998876665431        2234456 999999999999999998772     22222111111


Q ss_pred             cccCccCC-cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910          77 TEAGYVGD-DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        77 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                         .|... .++..-.++..+..+.+..++.+++++||+|+|.+.             +.+.|-.+||.
T Consensus       152 ---hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~g-------------Lld~lkpfLdy  204 (344)
T KOG2170|consen  152 ---HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPG-------------LLDVLKPFLDY  204 (344)
T ss_pred             ---cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHh-------------HHHHHhhhhcc
Confidence               11111 111112222223334456779999999999999987             88899999985

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.9e-10  Score=96.54  Aligned_cols=158  Identities=18%  Similarity=0.254  Sum_probs=101.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----eEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----IIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~   79 (225)
                      +.+.+.+..++++...+...+.+          ..+.+++++||||||||.+++.+++++..+     ++++||......
T Consensus        17 ~~l~~Re~ei~~l~~~l~~~~~~----------~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~   86 (366)
T COG1474          17 EELPHREEEINQLASFLAPALRG----------ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTP   86 (366)
T ss_pred             ccccccHHHHHHHHHHHHHHhcC----------CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCH
Confidence            44667788888887765444332          223369999999999999999999988433     899999665331


Q ss_pred             --------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          80 --------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        80 --------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                                    -..|......+..+++...   ......|+++||+|.+....             ...|+.++.-.
T Consensus        87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~---~~~~~~IvvLDEid~L~~~~-------------~~~LY~L~r~~  150 (366)
T COG1474          87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLS---KKGKTVIVILDEVDALVDKD-------------GEVLYSLLRAP  150 (366)
T ss_pred             HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHH---hcCCeEEEEEcchhhhcccc-------------chHHHHHHhhc
Confidence                          1122222233333332221   12356799999999999773             24455554421


Q ss_pred             CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910         146 NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                      ..          .+..  +.+|+.+|-...    .+.+++-+.++|... |.|++.+.++
T Consensus       151 ~~----------~~~~--v~vi~i~n~~~~----~~~ld~rv~s~l~~~~I~F~pY~a~e  194 (366)
T COG1474         151 GE----------NKVK--VSIIAVSNDDKF----LDYLDPRVKSSLGPSEIVFPPYTAEE  194 (366)
T ss_pred             cc----------ccee--EEEEEEeccHHH----HHHhhhhhhhccCcceeeeCCCCHHH
Confidence            10          0112  677777777421    356899999998777 9999999887

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=99.14  E-value=1.6e-10  Score=91.29  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=73.2

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~  116 (225)
                      .++++|+||+|||||++|+++++.+   +.++..+++.....             . +..      .....+++|||++.
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~-------------~-~~~------~~~~~~liiDdi~~  101 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL-------------A-FDF------DPEAELYAVDDVER  101 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH-------------H-Hhh------cccCCEEEEeChhh
Confidence            3578999999999999999999876   55677777655321             0 011      12467999999998


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc--cc
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QE  194 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~  194 (225)
                      +...             .+..|+.+++....             +...+++.+++..-    ....+.+.+.+||.  ..
T Consensus       102 l~~~-------------~~~~L~~~~~~~~~-------------~~~~~vl~~~~~~~----~~~~l~~~L~sr~~~~~~  151 (227)
T PRK08903        102 LDDA-------------QQIALFNLFNRVRA-------------HGQGALLVAGPAAP----LALPLREDLRTRLGWGLV  151 (227)
T ss_pred             cCch-------------HHHHHHHHHHHHHH-------------cCCcEEEEeCCCCH----HhCCCCHHHHHHHhcCeE
Confidence            8654             56777777764210             00123334443310    01135577888884  45


Q ss_pred             cccccccccc
Q psy5910         195 TNFLEKLNNN  204 (225)
Q Consensus       195 i~~~~~~~~~  204 (225)
                      +.+++++.+.
T Consensus       152 i~l~pl~~~~  161 (227)
T PRK08903        152 YELKPLSDAD  161 (227)
T ss_pred             EEecCCCHHH
Confidence            8888888653

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=99.13  E-value=5.8e-11  Score=101.58  Aligned_cols=129  Identities=15%  Similarity=0.287  Sum_probs=76.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID  115 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid  115 (225)
                      .+++|+||||||||+|++++++.+     +..++++++.++.. .+...-.......+..      ......+|+|||++
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~dlLiiDDi~  209 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN-DFVNALRNNKMEEFKE------KYRSVDLLLIDDIQ  209 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH-HHHHHHHcCCHHHHHH------HHHhCCEEEEehhh
Confidence            368899999999999999999887     46677887765432 1110000000011111      11245699999999


Q ss_pred             hhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc--
Q psy5910         116 KISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ--  193 (225)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~--  193 (225)
                      .+....           ..+..|+..++....            .. ..+++.+...+-    ....+++.+.+||..  
T Consensus       210 ~l~~~~-----------~~~~~l~~~~n~~~~------------~~-~~iiits~~~p~----~l~~l~~~l~SRl~~g~  261 (405)
T TIGR00362       210 FLAGKE-----------RTQEEFFHTFNALHE------------NG-KQIVLTSDRPPK----ELPGLEERLRSRFEWGL  261 (405)
T ss_pred             hhcCCH-----------HHHHHHHHHHHHHHH------------CC-CCEEEecCCCHH----HHhhhhhhhhhhccCCe
Confidence            987542           246667777764211            01 023333332211    123477889999975  


Q ss_pred             ccccccccccc
Q psy5910         194 ETNFLEKLNNN  204 (225)
Q Consensus       194 ~i~~~~~~~~~  204 (225)
                      .+.++.|+.+.
T Consensus       262 ~v~i~~pd~~~  272 (405)
T TIGR00362       262 VVDIEPPDLET  272 (405)
T ss_pred             EEEeCCCCHHH
Confidence            48888888765

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK06526 transposase; Provisional

Probab=99.13  E-value=5.9e-11  Score=94.97  Aligned_cols=129  Identities=19%  Similarity=0.279  Sum_probs=75.1

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~  116 (225)
                      ..+++|+||||||||+||.+|+..+   |..+...+...+... .............+.      ......+|+|||++.
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~-l~~~~~~~~~~~~l~------~l~~~dlLIIDD~g~  170 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVAR-LAAAHHAGRLQAELV------KLGRYPLLIVDEVGY  170 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHH-HHHHHhcCcHHHHHH------HhccCCEEEEccccc
Confidence            4589999999999999999998876   555555444433210 000000000111111      113567999999998


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc-c--ccHHHHHHhhccc
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA-F--SGIENFIINRINQ  193 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~-~--~~l~~al~~Rf~~  193 (225)
                      .....           ..++.|.++++....             +  ..+|.|||..+-.+.. +  .-+-.++++|+-.
T Consensus       171 ~~~~~-----------~~~~~L~~li~~r~~-------------~--~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~  224 (254)
T PRK06526        171 IPFEP-----------EAANLFFQLVSSRYE-------------R--ASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVH  224 (254)
T ss_pred             CCCCH-----------HHHHHHHHHHHHHHh-------------c--CCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhc
Confidence            76442           245678888874221             1  3467888887644432 1  2366788898754


Q ss_pred             c---ccccccc
Q psy5910         194 E---TNFLEKL  201 (225)
Q Consensus       194 ~---i~~~~~~  201 (225)
                      .   +.+.-++
T Consensus       225 ~~~~i~~~g~s  235 (254)
T PRK06526        225 HAEVISLKGDS  235 (254)
T ss_pred             CceEEeecCCC
Confidence            4   5555444

>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]

Probab=99.12  E-value=2.1e-11  Score=108.12  Aligned_cols=181  Identities=17%  Similarity=0.165  Sum_probs=112.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccce-eeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNI-YLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~-~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g   83 (225)
                      -.|+|.+.+|+.+.-.+   +++.......+. -...-||||.|.||||||.|.+.+++.+...++. ++......|...
T Consensus       286 PsIyG~e~VKkAilLqL---fgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgkgss~~GLTA  361 (682)
T COG1241         286 PSIYGHEDVKKAILLQL---FGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGKGSSAAGLTA  361 (682)
T ss_pred             ccccCcHHHHHHHHHHh---cCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccccccccCcee
Confidence            45789999888876544   333322211111 1222489999999999999999999988665443 332211112111


Q ss_pred             CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      .-.......-|.-..|.+-.+.++|..|||+|+|...             -+.++..+|++...++...+-......+  
T Consensus       362 av~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~-------------dr~aihEaMEQQtIsIaKAGI~atLnAR--  426 (682)
T COG1241         362 AVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEE-------------DRVAIHEAMEQQTISIAKAGITATLNAR--  426 (682)
T ss_pred             EEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChH-------------HHHHHHHHHHhcEeeecccceeeecchh--
Confidence            1000000001111224455678999999999999866             6899999999888777666533333333  


Q ss_pred             eeEEecCcceee-ccCc-----cccHHHHHHhhcccc-cccccccccc
Q psy5910         164 VFNIDTTNILFI-AGGA-----FSGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i-~~~~-----~~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                      .-++++.|..+- ++.+     .-++++++++|||.. +-...|+++.
T Consensus       427 csvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~  474 (682)
T COG1241         427 CSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEK  474 (682)
T ss_pred             hhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccc
Confidence            677788887662 2211     135899999999998 5555666543

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=99.11  E-value=2e-10  Score=88.91  Aligned_cols=152  Identities=20%  Similarity=0.288  Sum_probs=104.0

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCcc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~   82 (225)
                      .|+|-+.+++.|.+....+..+          .+..+|||+|.-|||||+|.+++.+++   +..++.++..++..    
T Consensus        61 ~l~Gvd~qk~~L~~NT~~F~~G----------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~----  126 (287)
T COG2607          61 DLVGVDRQKEALVRNTEQFAEG----------LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT----  126 (287)
T ss_pred             HHhCchHHHHHHHHHHHHHHcC----------CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh----
Confidence            4689999999998877555554          455699999999999999999999888   56688887777643    


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                         ....+..+ +      ...+.-|||+|+.--=            .++.....|-.+||+.-..         ..+| 
T Consensus       127 ---Lp~l~~~L-r------~~~~kFIlFcDDLSFe------------~gd~~yK~LKs~LeG~ve~---------rP~N-  174 (287)
T COG2607         127 ---LPDLVELL-R------ARPEKFILFCDDLSFE------------EGDDAYKALKSALEGGVEG---------RPAN-  174 (287)
T ss_pred             ---HHHHHHHH-h------cCCceEEEEecCCCCC------------CCchHHHHHHHHhcCCccc---------CCCe-
Confidence               12223222 1      1246789999984321            1223678888899975433         2344 


Q ss_pred             ceeEEecCcceeeccC----c---cccHHH--------HHHhhcccccccccccccc
Q psy5910         163 QVFNIDTTNILFIAGG----A---FSGIEN--------FIINRINQETNFLEKLNNN  204 (225)
Q Consensus       163 ~~~~i~ttn~~~i~~~----~---~~~l~~--------al~~Rf~~~i~~~~~~~~~  204 (225)
                       |++.+|||+--+.-.    +   ...+++        ++-+||..-+.|.+++.+.
T Consensus       175 -Vl~YATSNRRHLl~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~  230 (287)
T COG2607         175 -VLFYATSNRRHLLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDE  230 (287)
T ss_pred             -EEEEEecCCcccccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHH
Confidence             999999998753331    1   112221        3445999999999999876

>PRK08181 transposase; Validated

Probab=99.11  E-value=8.3e-11  Score=94.66  Aligned_cols=129  Identities=16%  Similarity=0.230  Sum_probs=76.5

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~  116 (225)
                      ..+++|+||||||||.||.++++.+   +..+++++..++... +............++.      .....+|+|||+..
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~-l~~a~~~~~~~~~l~~------l~~~dLLIIDDlg~  178 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK-LQVARRELQLESAIAK------LDKFDLLILDDLAY  178 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH-HHHHHhCCcHHHHHHH------HhcCCEEEEecccc
Confidence            4579999999999999999999765   666777766554321 0000000001111111      13567999999988


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc---ccHHHHHHhhccc
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF---SGIENFIINRINQ  193 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~---~~l~~al~~Rf~~  193 (225)
                      .....           ..+..|+++++....             +  --+|.|||..+--+...   ..+..++++|+-.
T Consensus       179 ~~~~~-----------~~~~~Lf~lin~R~~-------------~--~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h  232 (269)
T PRK08181        179 VTKDQ-----------AETSVLFELISARYE-------------R--RSILITANQPFGEWNRVFPDPAMTLAAVDRLVH  232 (269)
T ss_pred             ccCCH-----------HHHHHHHHHHHHHHh-------------C--CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhc
Confidence            76541           245678888875321             1  34677888865333211   1356788888744


Q ss_pred             c---ccccccc
Q psy5910         194 E---TNFLEKL  201 (225)
Q Consensus       194 ~---i~~~~~~  201 (225)
                      .   |.+.-++
T Consensus       233 ~~~~i~~~g~s  243 (269)
T PRK08181        233 HATIFEMNVES  243 (269)
T ss_pred             CceEEecCCcc
Confidence            3   5555433

>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator

Probab=99.11  E-value=3.4e-10  Score=98.01  Aligned_cols=116  Identities=18%  Similarity=0.362  Sum_probs=73.1

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEE
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG----YVGDDVESIIQKLLHECDYDVELAEQSIIYI  111 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~i  111 (225)
                      ...+++++|++||||+++|++++...   +.+|+.++|..+.+..    +.|.. ...+........+.+....+++|||
T Consensus       161 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l  239 (445)
T TIGR02915       161 SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYE-KGAFTGAVKQTLGKIEYAHGGTLFL  239 (445)
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCC-CCCcCCCccCCCCceeECCCCEEEE
Confidence            34589999999999999999999876   4689999998763210    01100 0000000011122344567899999


Q ss_pred             cchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910         112 DEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       112 DEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      ||++.+...             +|..|+++|+.....  ..++......+  +.+|++|+.
T Consensus       240 ~~i~~l~~~-------------~q~~l~~~l~~~~~~--~~~~~~~~~~~--~rii~~~~~  283 (445)
T TIGR02915       240 DEIGDLPLN-------------LQAKLLRFLQERVIE--RLGGREEIPVD--VRIVCATNQ  283 (445)
T ss_pred             echhhCCHH-------------HHHHHHHHHhhCeEE--eCCCCceeeec--eEEEEecCC
Confidence            999999988             899999999864321  11111111112  777888877

Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).

>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite

Probab=99.11  E-value=5.4e-12  Score=104.88  Aligned_cols=179  Identities=18%  Similarity=0.165  Sum_probs=90.8

Q ss_pred             eeechhhHHhhheeeeEecccceEe-ecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFL-LKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      .|+|.+.+|..+.-.+.   +.... ..+.......-|+||+|.||||||.|.+.+++..... ++.++......|....
T Consensus        25 ~i~g~~~iK~aill~L~---~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~-v~~~g~~~s~~gLta~  100 (331)
T PF00493_consen   25 SIYGHEDIKKAILLQLF---GGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRS-VYTSGKGSSAAGLTAS  100 (331)
T ss_dssp             TTTT-HHHHHHHCCCCT---T--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSE-EEEECCGSTCCCCCEE
T ss_pred             cCcCcHHHHHHHHHHHH---hccccccccccccccccceeeccchhhhHHHHHHHHHhhCCce-EEECCCCcccCCccce
Confidence            57899999888866552   22111 1111112334599999999999999999888776443 3444433222222110


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      -.......-+.-..|.+-.+.++|.+|||+|++...             .+..|+++||....++...+....-..+  .
T Consensus       101 ~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi~~~l~ar--~  165 (331)
T PF00493_consen  101 VSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGIVTTLNAR--C  165 (331)
T ss_dssp             ECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSSEEEEE-----
T ss_pred             eccccccceeEEeCCchhcccCceeeecccccccch-------------HHHHHHHHHHcCeeccchhhhcccccch--h
Confidence            000000000000113334568899999999999876             6899999999877766554422222222  5


Q ss_pred             eEEecCcceeeccC---c---cccHHHHHHhhcccc-ccccccccc
Q psy5910         165 FNIDTTNILFIAGG---A---FSGIENFIINRINQE-TNFLEKLNN  203 (225)
Q Consensus       165 ~~i~ttn~~~i~~~---~---~~~l~~al~~Rf~~~-i~~~~~~~~  203 (225)
                      -++++.|..+-...   +   .-++++++++|||.. +-...++++
T Consensus       166 svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~  211 (331)
T PF00493_consen  166 SVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEE  211 (331)
T ss_dssp             EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-H
T ss_pred             hhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccc
Confidence            67777776541110   0   015899999999988 444555543

; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=99.10  E-value=5.5e-10  Score=92.75  Aligned_cols=65  Identities=11%  Similarity=0.167  Sum_probs=48.5

Q ss_pred             hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccH
Q psy5910         104 AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGI  183 (225)
Q Consensus       104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l  183 (225)
                      ...-|++||++|+|...             ..++||+.||+             |..+  +++|.+|+.       ++.|
T Consensus       131 ~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------------Pp~~--t~fiL~t~~-------~~~L  175 (342)
T PRK06964        131 GGARVVVLYPAEALNVA-------------AANALLKTLEE-------------PPPG--TVFLLVSAR-------IDRL  175 (342)
T ss_pred             CCceEEEEechhhcCHH-------------HHHHHHHHhcC-------------CCcC--cEEEEEECC-------hhhC
Confidence            45579999999999977             89999999996             2233  444444444       5789


Q ss_pred             HHHHHhhcccccccccccccc
Q psy5910         184 ENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       184 ~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+.+++|+ ..+.|+.|+.+.
T Consensus       176 LpTI~SRc-q~i~~~~~~~~~  195 (342)
T PRK06964        176 LPTILSRC-RQFPMTVPAPEA  195 (342)
T ss_pred             cHHHHhcC-EEEEecCCCHHH
Confidence            99999997 457787777654

>PRK15115 response regulator GlrR; Provisional

Probab=99.10  E-value=2.4e-10  Score=98.91  Aligned_cols=118  Identities=18%  Similarity=0.363  Sum_probs=78.0

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHh-----------cchhhhhhC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHE-----------CDYDVELAE  105 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~  105 (225)
                      ..+++++|++||||+++|+++++..   +.+|+.++|..+.+.        ..-..+|..           ..+......
T Consensus       157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~--------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~  228 (444)
T PRK15115        157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQ--------LLESELFGHARGAFTGAVSNREGLFQAAE  228 (444)
T ss_pred             CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHH--------HHHHHhcCCCcCCCCCCccCCCCcEEECC
Confidence            3578999999999999999999886   478999999876431        011111111           112334567


Q ss_pred             CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHH
Q psy5910         106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIEN  185 (225)
Q Consensus       106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~  185 (225)
                      +++|||||++.+.+.             .|..|+.+|+.....  ..++...  ...++.+|++|+.         +++.
T Consensus       229 ~gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~--~~g~~~~--~~~~~rii~~~~~---------~l~~  282 (444)
T PRK15115        229 GGTLFLDEIGDMPAP-------------LQVKLLRVLQERKVR--PLGSNRD--IDIDVRIISATHR---------DLPK  282 (444)
T ss_pred             CCEEEEEccccCCHH-------------HHHHHHHHHhhCCEE--eCCCCce--eeeeEEEEEeCCC---------CHHH
Confidence            899999999999988             899999999864321  1111110  1112677777776         5666


Q ss_pred             HHHh-hc
Q psy5910         186 FIIN-RI  191 (225)
Q Consensus       186 al~~-Rf  191 (225)
                      .+.+ +|
T Consensus       283 ~~~~~~f  289 (444)
T PRK15115        283 AMARGEF  289 (444)
T ss_pred             HHHcCCc
Confidence            6555 44

>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional

Probab=99.09  E-value=3.2e-10  Score=98.46  Aligned_cols=108  Identities=20%  Similarity=0.356  Sum_probs=72.5

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHh-----------cchhhhhhC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHE-----------CDYDVELAE  105 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~  105 (225)
                      ..+++++|++||||+++|++++...   +.+|+.++|..+.+.        ..-..+|..           ..+.+....
T Consensus       166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~--------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~  237 (457)
T PRK11361        166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES--------LLESELFGHEKGAFTGAQTLRQGLFERAN  237 (457)
T ss_pred             CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH--------HHHHHhcCCCCCCCCCCCCCCCCceEECC
Confidence            4579999999999999999998876   578999999876421        011111111           012334567


Q ss_pred             CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910         106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      +++|||||++.+.+.             +|..|+.+|+.....  ..++......+  +.+|++|+.
T Consensus       238 ~gtl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~--~~~~~~~~~~~--~rii~~t~~  287 (457)
T PRK11361        238 EGTLLLDEIGEMPLV-------------LQAKLLRILQEREFE--RIGGHQTIKVD--IRIIAATNR  287 (457)
T ss_pred             CCEEEEechhhCCHH-------------HHHHHHHHHhcCcEE--eCCCCceeeec--eEEEEeCCC
Confidence            899999999999988             899999999864321  11111111112  788888877

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=99.08  E-value=8.5e-10  Score=91.01  Aligned_cols=127  Identities=14%  Similarity=0.254  Sum_probs=76.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE--EeccC--------------cccc-cCccCCcH-HHHHHHHHHhcchhhhh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII--VVDAT--------------SFTE-AGYVGDDV-ESIIQKLLHECDYDVEL  103 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~--~~~~~--------------~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~  103 (225)
                      .+||+||+|+||+++|+.+|+.+.+.--  .-.|+              ++.. ....|..+ ...++.+.+........
T Consensus        26 A~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~~~~  105 (325)
T PRK06871         26 ALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQHAQQ  105 (325)
T ss_pred             eEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhcccc
Confidence            5679999999999999999998844210  00111              1100 00011110 12233333332111123


Q ss_pred             hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccH
Q psy5910         104 AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGI  183 (225)
Q Consensus       104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l  183 (225)
                      ...-|++||++|+|...             ..++|++.||+             |..+  .++|.+|+.       ++.+
T Consensus       106 g~~KV~iI~~a~~m~~~-------------AaNaLLKtLEE-------------Pp~~--~~fiL~t~~-------~~~l  150 (325)
T PRK06871        106 GGNKVVYIQGAERLTEA-------------AANALLKTLEE-------------PRPN--TYFLLQADL-------SAAL  150 (325)
T ss_pred             CCceEEEEechhhhCHH-------------HHHHHHHHhcC-------------CCCC--eEEEEEECC-------hHhC
Confidence            35579999999999977             79999999997             3333  444444444       5789


Q ss_pred             HHHHHhhcccccccccccccc
Q psy5910         184 ENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       184 ~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+.+++|. ..+.|+.|+.+.
T Consensus       151 lpTI~SRC-~~~~~~~~~~~~  170 (325)
T PRK06871        151 LPTIYSRC-QTWLIHPPEEQQ  170 (325)
T ss_pred             chHHHhhc-eEEeCCCCCHHH
Confidence            99999995 336777776554

>PRK12377 putative replication protein; Provisional

Probab=99.07  E-value=2.2e-10  Score=91.21  Aligned_cols=116  Identities=21%  Similarity=0.265  Sum_probs=70.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI  114 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  114 (225)
                      .+++|+||||||||+||.+|++.+   +..+..++..++...   .|....   .....++      ......+|+|||+
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~---~~~~~l~------~l~~~dLLiIDDl  172 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQ---SGEKFLQ------ELCKVDLLVLDEI  172 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccc---hHHHHHH------HhcCCCEEEEcCC
Confidence            578999999999999999999988   566666666554320   011000   0011111      1246789999999


Q ss_pred             hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910         115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN  192 (225)
Q Consensus       115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~  192 (225)
                      ......           +..+..|..+++.....            .  .-+|.|||..+--.  .+.+.+.+.+|+.
T Consensus       173 g~~~~s-----------~~~~~~l~~ii~~R~~~------------~--~ptiitSNl~~~~l--~~~~~~ri~dRl~  223 (248)
T PRK12377        173 GIQRET-----------KNEQVVLNQIIDRRTAS------------M--RSVGMLTNLNHEAM--STLLGERVMDRMT  223 (248)
T ss_pred             CCCCCC-----------HHHHHHHHHHHHHHHhc------------C--CCEEEEcCCCHHHH--HHHhhHHHHHHHh
Confidence            765432           11567888888864211            1  34577888732111  1246667888874

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=99.07  E-value=3e-10  Score=97.76  Aligned_cols=128  Identities=17%  Similarity=0.311  Sum_probs=74.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHH-HHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVE-SIIQKLLHECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~  116 (225)
                      .+++|+||+|+|||+|++++++.+   +..++++++..+... +... .. ... ..|..     ......+++|||++.
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~-~~~~-l~~~~~-~~f~~-----~~~~~dvLiIDDiq~  213 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH-LVSA-IRSGEM-QRFRQ-----FYRNVDALFIEDIEV  213 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH-HHHH-HhcchH-HHHHH-----HcccCCEEEEcchhh
Confidence            468899999999999999999876   567777776554320 1000 00 000 01111     123567999999999


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc--cc
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QE  194 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~  194 (225)
                      +..+.           ..+..|+.+++....            ..  ..+|.|++..-   .....+++.+++||.  ..
T Consensus       214 l~~k~-----------~~qeelf~l~N~l~~------------~~--k~IIlts~~~p---~~l~~l~~rL~SR~~~Gl~  265 (445)
T PRK12422        214 FSGKG-----------ATQEEFFHTFNSLHT------------EG--KLIVISSTCAP---QDLKAMEERLISRFEWGIA  265 (445)
T ss_pred             hcCCh-----------hhHHHHHHHHHHHHH------------CC--CcEEEecCCCH---HHHhhhHHHHHhhhcCCeE
Confidence            87541           246666666653210            01  22333333200   001357899999995  45


Q ss_pred             cccccccccc
Q psy5910         195 TNFLEKLNNN  204 (225)
Q Consensus       195 i~~~~~~~~~  204 (225)
                      +.+..|+.+.
T Consensus       266 ~~l~~pd~e~  275 (445)
T PRK12422        266 IPLHPLTKEG  275 (445)
T ss_pred             EecCCCCHHH
Confidence            7777777654

>PRK04132 replication factor C small subunit; Provisional

Probab=99.07  E-value=4.3e-10  Score=102.56  Aligned_cols=126  Identities=22%  Similarity=0.229  Sum_probs=87.0

Q ss_pred             ceeeeCCcEEEEc--CCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcc--hhhhhhC
Q psy5910          35 NIYLEKSNILLVG--PTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECD--YDVELAE  105 (225)
Q Consensus        35 ~~~~~~~~vLl~G--p~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~  105 (225)
                      +++.|.-+-+..|  |++.||||+|+++|+.+     +.+++.+|+++...        ...++...+.+.  ..+....
T Consensus       559 ~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~  630 (846)
T PRK04132        559 DLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG--------INVIREKVKEFARTKPIGGAS  630 (846)
T ss_pred             EeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCC
Confidence            3445555667789  99999999999999997     55789999987421        112333332210  0000112


Q ss_pred             CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHH
Q psy5910         106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIEN  185 (225)
Q Consensus       106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~  185 (225)
                      ..|++|||+|.+...             .|++|++.||...             .+  +.+|.++|.       +..+.+
T Consensus       631 ~KVvIIDEaD~Lt~~-------------AQnALLk~lEep~-------------~~--~~FILi~N~-------~~kIi~  675 (846)
T PRK04132        631 FKIIFLDEADALTQD-------------AQQALRRTMEMFS-------------SN--VRFILSCNY-------SSKIIE  675 (846)
T ss_pred             CEEEEEECcccCCHH-------------HHHHHHHHhhCCC-------------CC--eEEEEEeCC-------hhhCch
Confidence            369999999999876             8999999999622             22  556666666       568899


Q ss_pred             HHHhhcccccccccccccc
Q psy5910         186 FIINRINQETNFLEKLNNN  204 (225)
Q Consensus       186 al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++++|+ ..+.|+.++.++
T Consensus       676 tIrSRC-~~i~F~~ls~~~  693 (846)
T PRK04132        676 PIQSRC-AIFRFRPLRDED  693 (846)
T ss_pred             HHhhhc-eEEeCCCCCHHH
Confidence            999994 458888887654

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=99.06  E-value=1.3e-09  Score=89.66  Aligned_cols=127  Identities=20%  Similarity=0.266  Sum_probs=76.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE----------ecc---Cccc----ccCccCCc-----HHHHHHHHHHhcch
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV----------VDA---TSFT----EAGYVGDD-----VESIIQKLLHECDY   99 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~----------~~~---~~~~----~~~~~g~~-----~~~~~~~~~~~~~~   99 (225)
                      .+||+||+|+||+++|.++|+.+-+.-..          +..   .++.    .+...|.+     ....++.+.+....
T Consensus        28 A~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~  107 (319)
T PRK08769         28 GLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQKLAL  107 (319)
T ss_pred             eEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHHHHhh
Confidence            47799999999999999999887432100          000   0110    00011110     01223334333211


Q ss_pred             hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc
Q psy5910         100 DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA  179 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~  179 (225)
                      .......-|++||++|+|...             ..++|++.||+             |..+  ..+|.+++.       
T Consensus       108 ~p~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------------Pp~~--~~fiL~~~~-------  152 (319)
T PRK08769        108 TPQYGIAQVVIVDPADAINRA-------------ACNALLKTLEE-------------PSPG--RYLWLISAQ-------  152 (319)
T ss_pred             CcccCCcEEEEeccHhhhCHH-------------HHHHHHHHhhC-------------CCCC--CeEEEEECC-------
Confidence            112234579999999999977             79999999997             2233  444444444       


Q ss_pred             cccHHHHHHhhcccccccccccccc
Q psy5910         180 FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       180 ~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++.+.+.|++|+ ..+.|+.|+.++
T Consensus       153 ~~~lLpTIrSRC-q~i~~~~~~~~~  176 (319)
T PRK08769        153 PARLPATIRSRC-QRLEFKLPPAHE  176 (319)
T ss_pred             hhhCchHHHhhh-eEeeCCCcCHHH
Confidence            568999999995 336777776654

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=99.05  E-value=1.7e-10  Score=101.44  Aligned_cols=128  Identities=15%  Similarity=0.245  Sum_probs=77.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~  116 (225)
                      .++|||++|||||.|+++|++.+     +..++++++.++.. .+...-....... |.+     ......+|+||+++.
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~-el~~al~~~~~~~-f~~-----~y~~~DLLlIDDIq~  388 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN-EFINSIRDGKGDS-FRR-----RYREMDILLVDDIQF  388 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH-HHHHHHHhccHHH-HHH-----HhhcCCEEEEehhcc
Confidence            58899999999999999999987     45677887766542 1211000000111 111     123567999999999


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--  194 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--  194 (225)
                      +..+.           ..+..|+.+++....            .+  ..+|.|+|...   .....+++.|++||.--  
T Consensus       389 l~gke-----------~tqeeLF~l~N~l~e------------~g--k~IIITSd~~P---~eL~~l~~rL~SRf~~GLv  440 (617)
T PRK14086        389 LEDKE-----------STQEEFFHTFNTLHN------------AN--KQIVLSSDRPP---KQLVTLEDRLRNRFEWGLI  440 (617)
T ss_pred             ccCCH-----------HHHHHHHHHHHHHHh------------cC--CCEEEecCCCh---HhhhhccHHHHhhhhcCce
Confidence            87552           245667777764321            01  23344555511   11235788999999665  


Q ss_pred             cccccccccc
Q psy5910         195 TNFLEKLNNN  204 (225)
Q Consensus       195 i~~~~~~~~~  204 (225)
                      +.+..|+.+.
T Consensus       441 v~I~~PD~Et  450 (617)
T PRK14086        441 TDVQPPELET  450 (617)
T ss_pred             EEcCCCCHHH
Confidence            6777777665

>KOG0480|consensus

Probab=99.04  E-value=6.4e-11  Score=102.46  Aligned_cols=181  Identities=17%  Similarity=0.138  Sum_probs=108.6

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeee-CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLE-KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      --.|+|.+.+|.-+.-.+   +++.+.....+.+.. .-+|+++|.||||||.+.+++++.++..++ .++.....+|..
T Consensus       344 ~PsIyGhe~VK~GilL~L---fGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGkaSSaAGLT  419 (764)
T KOG0480|consen  344 FPSIYGHELVKAGILLSL---FGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGKASSAAGLT  419 (764)
T ss_pred             CccccchHHHHhhHHHHH---hCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCcccccccce
Confidence            346889998887775433   444444333222222 348999999999999999999998876544 333332222322


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                      -.-+..-...-|.-..|.+--+.++|=.|||+|+|..+             -|.+++++||+-..++...+-...-..+ 
T Consensus       420 aaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~-------------dqvAihEAMEQQtISIaKAGv~aTLnAR-  485 (764)
T KOG0480|consen  420 AAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVK-------------DQVAIHEAMEQQTISIAKAGVVATLNAR-  485 (764)
T ss_pred             EEEEecCCCCceeeecCcEEEccCceEEechhcccChH-------------hHHHHHHHHHhheehheecceEEeecch-
Confidence            11000000001111113333468899999999999965             4899999999877776655543332222 


Q ss_pred             ceeEEecCcceee-cc------CccccHHHHHHhhcccc-cccccccccc
Q psy5910         163 QVFNIDTTNILFI-AG------GAFSGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       163 ~~~~i~ttn~~~i-~~------~~~~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                       --+++++|.+-- .+      .| =.|.+++++|||.. |-...|++..
T Consensus       486 -tSIlAAANPv~GhYdR~ktl~eN-i~msApimSRFDL~FiLlD~~nE~~  533 (764)
T KOG0480|consen  486 -TSILAAANPVGGHYDRKKTLREN-INMSAPIMSRFDLFFILLDDCNEVV  533 (764)
T ss_pred             -hhhhhhcCCcCCccccccchhhh-cCCCchhhhhhcEEEEEecCCchHH
Confidence             445566665310 00      01 25899999999988 6666666543

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=99.03  E-value=1.3e-09  Score=90.50  Aligned_cols=126  Identities=10%  Similarity=0.148  Sum_probs=77.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCe--EEeccC--------------cccc---cCc-cCCcHHHHHHHHHHhcchhh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPI--IVVDAT--------------SFTE---AGY-VGDDVESIIQKLLHECDYDV  101 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~--~~~~~~--------------~~~~---~~~-~g~~~~~~~~~~~~~~~~~~  101 (225)
                      .+||+||+|+||+++|.++|+.+-+.-  -.-.|+              ++..   .+- ..-.+ .-++.+.+......
T Consensus        26 A~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~i-dqiR~l~~~~~~~~  104 (334)
T PRK07993         26 ALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGV-DAVREVTEKLYEHA  104 (334)
T ss_pred             EEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCH-HHHHHHHHHHhhcc
Confidence            567999999999999999999884310  000111              1100   000 00111 12333333221111


Q ss_pred             hhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccc
Q psy5910         102 ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFS  181 (225)
Q Consensus       102 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~  181 (225)
                      .....-|++||++|+|...             ..|+|++.||+             |..+  .++|.+++.       ++
T Consensus       105 ~~g~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------------Pp~~--t~fiL~t~~-------~~  149 (334)
T PRK07993        105 RLGGAKVVWLPDAALLTDA-------------AANALLKTLEE-------------PPEN--TWFFLACRE-------PA  149 (334)
T ss_pred             ccCCceEEEEcchHhhCHH-------------HHHHHHHHhcC-------------CCCC--eEEEEEECC-------hh
Confidence            2345679999999999977             89999999997             2233  444444433       57


Q ss_pred             cHHHHHHhhcccccccccccccc
Q psy5910         182 GIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       182 ~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+.+.+++|.. .+.|+.|+.+.
T Consensus       150 ~lLpTIrSRCq-~~~~~~~~~~~  171 (334)
T PRK07993        150 RLLATLRSRCR-LHYLAPPPEQY  171 (334)
T ss_pred             hChHHHHhccc-cccCCCCCHHH
Confidence            89999999975 47888877664

>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]

Probab=99.02  E-value=1.6e-10  Score=100.43  Aligned_cols=131  Identities=18%  Similarity=0.344  Sum_probs=92.2

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh--CCCeEEeccCcccc----cCccCCcHHHHHHHHHHh-cchhhhhhCCCEEEE
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII--NVPIIVVDATSFTE----AGYVGDDVESIIQKLLHE-CDYDVELAEQSIIYI  111 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~--~~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~vl~i  111 (225)
                      ..-++++.|+|||||-.++|++++..  ..||+.+||..+.+    +.+.|..... .+..+.+ ..+.+....++.+|+
T Consensus       335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~Ga-fTga~~kG~~g~~~~A~gGtlFl  413 (606)
T COG3284         335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGA-FTGARRKGYKGKLEQADGGTLFL  413 (606)
T ss_pred             cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccc-cccchhccccccceecCCCccHH
Confidence            34589999999999999999999877  56799999977643    2233332111 2222222 234566778999999


Q ss_pred             cchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh-h
Q psy5910         112 DEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN-R  190 (225)
Q Consensus       112 DEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~-R  190 (225)
                      |||..|+-.             +|..|+++|++...  ...++.. ....  +.+|++|+.         +|..-+.. |
T Consensus       414 deIgd~p~~-------------~Qs~LLrVl~e~~v--~p~g~~~-~~vd--irvi~ath~---------dl~~lv~~g~  466 (606)
T COG3284         414 DEIGDMPLA-------------LQSRLLRVLQEGVV--TPLGGTR-IKVD--IRVIAATHR---------DLAQLVEQGR  466 (606)
T ss_pred             HHhhhchHH-------------HHHHHHHHHhhCce--eccCCcc-eeEE--EEEEeccCc---------CHHHHHHcCC
Confidence            999999977             89999999987433  3344444 3333  999999999         77777766 7


Q ss_pred             ccccccc
Q psy5910         191 INQETNF  197 (225)
Q Consensus       191 f~~~i~~  197 (225)
                      |...++|
T Consensus       467 fredLyy  473 (606)
T COG3284         467 FREDLYY  473 (606)
T ss_pred             chHHHHH
Confidence            7554443

>KOG0478|consensus

Probab=99.01  E-value=1.3e-10  Score=101.30  Aligned_cols=178  Identities=19%  Similarity=0.208  Sum_probs=109.7

Q ss_pred             cceeechhhHHhhheeeeEecccceEeeccc-ceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc--cC
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSK-NIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE--AG   80 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~--~~   80 (225)
                      .-.|+|++++|+-|.-.+   +++.+.-... +-....-+|||+|.||||||.+.+.+++.+....+.--.+.-..  ..
T Consensus       428 APsIye~edvKkglLLqL---fGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTa  504 (804)
T KOG0478|consen  428 APSIYELEDVKKGLLLQL---FGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTA  504 (804)
T ss_pred             chhhhcccchhhhHHHHH---hcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhccee
Confidence            446889999998875544   3332222111 11122348999999999999999999999865443321111100  01


Q ss_pred             ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910          81 YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ  160 (225)
Q Consensus        81 ~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~  160 (225)
                      |+-.+..  -+++..+ .+.+-...+++=.|||+|+|..+             .++.|++.|+.-..++...+.......
T Consensus       505 yVtrd~d--tkqlVLe-sGALVLSD~GiCCIDEFDKM~dS-------------trSvLhEvMEQQTvSIAKAGII~sLNA  568 (804)
T KOG0478|consen  505 YVTKDPD--TRQLVLE-SGALVLSDNGICCIDEFDKMSDS-------------TRSVLHEVMEQQTLSIAKAGIIASLNA  568 (804)
T ss_pred             eEEecCc--cceeeee-cCcEEEcCCceEEchhhhhhhHH-------------HHHHHHHHHHHhhhhHhhcceeeeccc
Confidence            1111100  0111111 23334568899999999999866             789999999988888877765544444


Q ss_pred             CCceeEEecCcceeeccC-------ccccHHHHHHhhcccc-ccccccccc
Q psy5910         161 NPQVFNIDTTNILFIAGG-------AFSGIENFIINRINQE-TNFLEKLNN  203 (225)
Q Consensus       161 ~~~~~~i~ttn~~~i~~~-------~~~~l~~al~~Rf~~~-i~~~~~~~~  203 (225)
                      +  .-++++.|.+---.+       | =.|++.+++|||.. +-+..|++.
T Consensus       569 R--~SVLAaANP~~skynp~k~i~eN-I~LpptLLSRFDLIylllD~~DE~  616 (804)
T KOG0478|consen  569 R--CSVLAAANPIRSKYNPNKSIIEN-INLPPTLLSRFDLIFLLLDKPDER  616 (804)
T ss_pred             c--ceeeeeeccccccCCCCCchhhc-cCCChhhhhhhcEEEEEecCcchh
Confidence            4  566677765311000       1 15899999999998 777777765

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=99.01  E-value=6e-10  Score=96.04  Aligned_cols=130  Identities=15%  Similarity=0.293  Sum_probs=73.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID  115 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid  115 (225)
                      .+++||||||||||+|++++++.+     +..++++++.++... +...-.......+...     -.....+|+|||++
T Consensus       131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~-~~~~~~~~~~~~f~~~-----~~~~~dvLlIDDi~  204 (440)
T PRK14088        131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLND-LVDSMKEGKLNEFREK-----YRKKVDVLLIDDVQ  204 (440)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH-HHHHHhcccHHHHHHH-----HHhcCCEEEEechh
Confidence            368899999999999999999986     346777777654321 1000000001111111     01247799999999


Q ss_pred             hhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-
Q psy5910         116 KISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-  194 (225)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-  194 (225)
                      .+....           ..+..|+..++....           . . ..+++.+.+.+-    ....+.+.+.+||.-- 
T Consensus       205 ~l~~~~-----------~~q~elf~~~n~l~~-----------~-~-k~iIitsd~~p~----~l~~l~~rL~SR~~~gl  256 (440)
T PRK14088        205 FLIGKT-----------GVQTELFHTFNELHD-----------S-G-KQIVICSDREPQ----KLSEFQDRLVSRFQMGL  256 (440)
T ss_pred             hhcCcH-----------HHHHHHHHHHHHHHH-----------c-C-CeEEEECCCCHH----HHHHHHHHHhhHHhcCc
Confidence            886441           145666666653210           0 1 033333333310    1134677888898543 


Q ss_pred             -cccccccccc
Q psy5910         195 -TNFLEKLNNN  204 (225)
Q Consensus       195 -i~~~~~~~~~  204 (225)
                       +.+..|+.+.
T Consensus       257 ~v~i~~pd~e~  267 (440)
T PRK14088        257 VAKLEPPDEET  267 (440)
T ss_pred             eEeeCCCCHHH
Confidence             7788888765

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=99.00  E-value=3.1e-09  Score=88.05  Aligned_cols=126  Identities=17%  Similarity=0.213  Sum_probs=76.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC-------------------------eEEeccCcc-cccCc--cCCcHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP-------------------------IIVVDATSF-TEAGY--VGDDVESIIQKL   93 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~-------------------------~~~~~~~~~-~~~~~--~g~~~~~~~~~~   93 (225)
                      .+||+||+|+|||++|+.+|+.+.+.                         ++.+++..- .+.+.  ..-. ...++.+
T Consensus        23 A~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~-id~iR~l  101 (325)
T PRK08699         23 AWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIK-IDAVREI  101 (325)
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcC-HHHHHHH
Confidence            57799999999999999999987431                         222222110 00000  0001 1223444


Q ss_pred             HHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcce
Q psy5910          94 LHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNIL  173 (225)
Q Consensus        94 ~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~  173 (225)
                      .+............|+++|+++.+.+.             .++.|++.|++..             .. ..+++ +|+. 
T Consensus       102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LEep~-------------~~-~~~Il-vth~-  152 (325)
T PRK08699        102 IDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLEEPP-------------PQ-VVFLL-VSHA-  152 (325)
T ss_pred             HHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHHhCc-------------CC-CEEEE-EeCC-
Confidence            433322222345679999999999987             7999999998631             11 13444 4433 


Q ss_pred             eeccCccccHHHHHHhhcccccccccccccc
Q psy5910         174 FIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       174 ~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                            ++.+.+.+++|+ ..+.|+.|+.+.
T Consensus       153 ------~~~ll~ti~SRc-~~~~~~~~~~~~  176 (325)
T PRK08699        153 ------ADKVLPTIKSRC-RKMVLPAPSHEE  176 (325)
T ss_pred             ------hHhChHHHHHHh-hhhcCCCCCHHH
Confidence                  468889999985 347777776654

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=99.00  E-value=3.4e-10  Score=85.95  Aligned_cols=116  Identities=18%  Similarity=0.295  Sum_probs=59.5

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE  113 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE  113 (225)
                      ..+++|+||||||||.||.++++.+   +.++.+++..++...   .+........+..          .....+|+|||
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~----------l~~~dlLilDD  116 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR----------LKRVDLLILDD  116 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH----------HHTSSCEEEET
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc----------cccccEecccc
Confidence            3589999999999999999999876   777888877665321   1111111121211          13567999999


Q ss_pred             hhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc---cccHHHHHHhh
Q psy5910         114 IDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA---FSGIENFIINR  190 (225)
Q Consensus       114 id~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~---~~~l~~al~~R  190 (225)
                      +......           +...+.|.++++....             +  --+|.|||..+-....   -..+.+++++|
T Consensus       117 lG~~~~~-----------~~~~~~l~~ii~~R~~-------------~--~~tIiTSN~~~~~l~~~~~d~~~a~aildR  170 (178)
T PF01695_consen  117 LGYEPLS-----------EWEAELLFEIIDERYE-------------R--KPTIITSNLSPSELEEVLGDRALAEAILDR  170 (178)
T ss_dssp             CTSS--------------HHHHHCTHHHHHHHHH-------------T---EEEEEESS-HHHHHT--------------
T ss_pred             cceeeec-----------ccccccchhhhhHhhc-------------c--cCeEeeCCCchhhHhhcccccccccccccc
Confidence            8764432           2245677888875321             1  2356688884322211   12355666666


Q ss_pred             c
Q psy5910         191 I  191 (225)
Q Consensus       191 f  191 (225)
                      +
T Consensus       171 l  171 (178)
T PF01695_consen  171 L  171 (178)
T ss_dssp             -
T ss_pred             c
Confidence            5

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK09183 transposase/IS protein; Provisional

Probab=98.99  E-value=7.4e-10  Score=89.07  Aligned_cols=130  Identities=17%  Similarity=0.216  Sum_probs=75.0

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~  116 (225)
                      ..+++|+||||||||+||.+++..+   +..+.+++..++... +........+...+..     ....+.+++|||+..
T Consensus       102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~-l~~a~~~~~~~~~~~~-----~~~~~dlLiiDdlg~  175 (259)
T PRK09183        102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQ-LSTAQRQGRYKTTLQR-----GVMAPRLLIIDEIGY  175 (259)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHH-HHHHHHCCcHHHHHHH-----HhcCCCEEEEccccc
Confidence            3578899999999999999998764   556666665444210 1000000001112211     013567999999987


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc----cccHHHHHHhhcc
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA----FSGIENFIINRIN  192 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~----~~~l~~al~~Rf~  192 (225)
                      .....           ...+.|+++++....             +  -.+|.|||..+-.+..    -..+.+++++|+-
T Consensus       176 ~~~~~-----------~~~~~lf~li~~r~~-------------~--~s~iiTsn~~~~~w~~~~~~d~~~~~ai~dRl~  229 (259)
T PRK09183        176 LPFSQ-----------EEANLFFQVIAKRYE-------------K--GSMILTSNLPFGQWDQTFAGDAALTSAMLDRLL  229 (259)
T ss_pred             CCCCh-----------HHHHHHHHHHHHHHh-------------c--CcEEEecCCCHHHHHHHhcCchhHHHHHHHHHh
Confidence            65442           135678888865321             1  2357788887544321    1246678999874


Q ss_pred             cc---ccccccc
Q psy5910         193 QE---TNFLEKL  201 (225)
Q Consensus       193 ~~---i~~~~~~  201 (225)
                      ..   |.+.-++
T Consensus       230 ~~~~~i~~~g~s  241 (259)
T PRK09183        230 HHSHVVQIKGES  241 (259)
T ss_pred             cceEEEeecCCC
Confidence            43   5555443

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.97  E-value=3.8e-09  Score=86.97  Aligned_cols=127  Identities=15%  Similarity=0.190  Sum_probs=76.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE-ecc--------------Cccc--ccCccCCcH-HHHHHHHHHhcchhhhh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV-VDA--------------TSFT--EAGYVGDDV-ESIIQKLLHECDYDVEL  103 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~-~~~--------------~~~~--~~~~~g~~~-~~~~~~~~~~~~~~~~~  103 (225)
                      .+||+||.|+||+++|+.+|+.+-+.-.. -.|              .++.  .+...|..+ ...++.+.+........
T Consensus        27 A~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~  106 (319)
T PRK06090         27 ALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQESSQL  106 (319)
T ss_pred             eEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhhCccc
Confidence            57799999999999999999988432100 001              1110  000011111 11223333222111122


Q ss_pred             hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccH
Q psy5910         104 AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGI  183 (225)
Q Consensus       104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l  183 (225)
                      ...-|++||++|+|...             ..++|++.||+             |..+  .++|.+|+.       ++.+
T Consensus       107 ~~~kV~iI~~ae~m~~~-------------AaNaLLKtLEE-------------Pp~~--t~fiL~t~~-------~~~l  151 (319)
T PRK06090        107 NGYRLFVIEPADAMNES-------------ASNALLKTLEE-------------PAPN--CLFLLVTHN-------QKRL  151 (319)
T ss_pred             CCceEEEecchhhhCHH-------------HHHHHHHHhcC-------------CCCC--eEEEEEECC-------hhhC
Confidence            34579999999999977             79999999997             3333  444444433       5688


Q ss_pred             HHHHHhhcccccccccccccc
Q psy5910         184 ENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       184 ~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+.+++|.. .+.|+.|+.+.
T Consensus       152 LpTI~SRCq-~~~~~~~~~~~  171 (319)
T PRK06090        152 LPTIVSRCQ-QWVVTPPSTAQ  171 (319)
T ss_pred             hHHHHhcce-eEeCCCCCHHH
Confidence            999999953 47777777654

>TIGR01818 ntrC nitrogen regulation protein NR(I)

Probab=98.95  E-value=1.9e-09  Score=93.84  Aligned_cols=115  Identities=18%  Similarity=0.316  Sum_probs=71.3

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG----YVGDDVESIIQKLLHECDYDVELAEQSIIYID  112 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iD  112 (225)
                      ..++++.|++||||+++|++++...   +.+|+.++|..+.+.-    ..|.. ...+........+......+++||||
T Consensus       157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~-~~~~~~~~~~~~g~~~~a~~gtl~l~  235 (463)
T TIGR01818       157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHE-KGAFTGANTRRQGRFEQADGGTLFLD  235 (463)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCC-CCCCCCcccCCCCcEEECCCCeEEEE
Confidence            3478999999999999999999876   5689999998763210    01110 00000000011122345578999999


Q ss_pred             chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910         113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      |++.+...             +|..|+++|+.....  ..++......+  +.+|++|+.
T Consensus       236 ei~~l~~~-------------~q~~ll~~l~~~~~~--~~~~~~~~~~~--~rii~~~~~  278 (463)
T TIGR01818       236 EIGDMPLD-------------AQTRLLRVLADGEFY--RVGGRTPIKVD--VRIVAATHQ  278 (463)
T ss_pred             chhhCCHH-------------HHHHHHHHHhcCcEE--ECCCCceeeee--eEEEEeCCC
Confidence            99999987             899999999864321  11111111112  677777776

This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.

>PRK05642 DNA replication initiation factor; Validated

Probab=98.95  E-value=3.3e-09  Score=84.11  Aligned_cols=120  Identities=13%  Similarity=0.215  Sum_probs=71.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      .+++|+||+|||||+|++++++.+   +..+++++..++...          ...+.+..      ....+++||+++.+
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~----------~~~~~~~~------~~~d~LiiDDi~~~  109 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR----------GPELLDNL------EQYELVCLDDLDVI  109 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh----------hHHHHHhh------hhCCEEEEechhhh
Confidence            578899999999999999999765   556777776655320          01111111      23358999999988


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--c
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--T  195 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i  195 (225)
                      ....           ..+..|+.+++....             +...+++.++..+    .....+.+.+++||.--  +
T Consensus       110 ~~~~-----------~~~~~Lf~l~n~~~~-------------~g~~ilits~~~p----~~l~~~~~~L~SRl~~gl~~  161 (234)
T PRK05642        110 AGKA-----------DWEEALFHLFNRLRD-------------SGRRLLLAASKSP----RELPIKLPDLKSRLTLALVF  161 (234)
T ss_pred             cCCh-----------HHHHHHHHHHHHHHh-------------cCCEEEEeCCCCH----HHcCccCccHHHHHhcCeee
Confidence            6542           135667777764210             0113444443331    01234568899998533  5


Q ss_pred             ccccccccc
Q psy5910         196 NFLEKLNNN  204 (225)
Q Consensus       196 ~~~~~~~~~  204 (225)
                      .+..|+.+.
T Consensus       162 ~l~~~~~e~  170 (234)
T PRK05642        162 QMRGLSDED  170 (234)
T ss_pred             ecCCCCHHH
Confidence            556655544

>KOG0482|consensus

Probab=98.95  E-value=2.2e-10  Score=96.97  Aligned_cols=178  Identities=16%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceee-eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYL-EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~-~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g   83 (225)
                      -.|+|.+++|+.|.-.+.   ++.....+.+... ..-+|+|.|.||+.||.|.+.|.+......+.---++.    =+|
T Consensus       342 PEIyGheDVKKaLLLlLV---Ggvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSS----GVG  414 (721)
T KOG0482|consen  342 PEIYGHEDVKKALLLLLV---GGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSS----GVG  414 (721)
T ss_pred             hhhccchHHHHHHHHHhh---CCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCC----ccc
Confidence            358999999998876552   2222221111112 22389999999999999999999987665544322211    011


Q ss_pred             CcH---HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910          84 DDV---ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ  160 (225)
Q Consensus        84 ~~~---~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~  160 (225)
                      -+.   ...++.-.--..+.+-.+.++|-.|||+|++...             =..++.++||+...++...+....-..
T Consensus       415 LTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~-------------DRtAIHEVMEQQTISIaKAGI~TtLNA  481 (721)
T KOG0482|consen  415 LTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDES-------------DRTAIHEVMEQQTISIAKAGINTTLNA  481 (721)
T ss_pred             cchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhh-------------hhHHHHHHHHhhhhhhhhhccccchhh
Confidence            110   0000000000113334567889999999999866             357888889887777766665554444


Q ss_pred             CCceeEEecCcceeeccC---cc---ccHHHHHHhhcccc-cccccccccc
Q psy5910         161 NPQVFNIDTTNILFIAGG---AF---SGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       161 ~~~~~~i~ttn~~~i~~~---~~---~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                      +  ..++++.|..|--=+   ++   =+||.|+++|||.. +--..|+.+.
T Consensus       482 R--~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~  530 (721)
T KOG0482|consen  482 R--TSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDN  530 (721)
T ss_pred             h--HHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccc
Confidence            4  777888888652111   11   25999999999998 6666666654

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.94  E-value=7.7e-09  Score=71.95  Aligned_cols=105  Identities=23%  Similarity=0.277  Sum_probs=59.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccccc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTD  122 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~  122 (225)
                      |.|+||||+|||++|+.+++.+...+.......+    |....    -...+.-.      ....++++||+....... 
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~v----y~~~~----~~~~w~gY------~~q~vvi~DD~~~~~~~~-   65 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSV----YTRNP----GDKFWDGY------QGQPVVIIDDFGQDNDGY-   65 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcE----EeCCC----ccchhhcc------CCCcEEEEeecCcccccc-
Confidence            4699999999999999998877432211111111    11111    01122111      245799999998876431 


Q ss_pred             ccCCCCCChHHHHHHHHHHHhcCCcCccccccc--cCCCCCCceeEEecCcc
Q psy5910         123 VVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK--KNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~--~~~~~~~~~~~i~ttn~  172 (225)
                              .......++++++......+.....  ......  .++|.|||.
T Consensus        66 --------~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s--~~vi~tsN~  107 (107)
T PF00910_consen   66 --------NYSDESELIRLISSNPFQPNMADLEDKGTPFNS--KLVIITSNF  107 (107)
T ss_pred             --------chHHHHHHHHHHhcCCcccccccHhhCCCccCC--CEEEEcCCC
Confidence                    0114677888888766655433322  123333  577777773

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK08116 hypothetical protein; Validated

Probab=98.93  E-value=3.7e-09  Score=85.40  Aligned_cols=124  Identities=20%  Similarity=0.321  Sum_probs=72.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI  114 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  114 (225)
                      .+++|+|++|||||+||.++++.+   +.+++.++..++...   .|.+.. ......+++.      .....+|+|||+
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~-~~~~~~~~~~------l~~~dlLviDDl  187 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG-KEDENEIIRS------LVNADLLILDDL  187 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc-cccHHHHHHH------hcCCCEEEEecc
Confidence            469999999999999999999987   677777776554320   111110 0001111111      134569999998


Q ss_pred             hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcccc----HHHHHHhh
Q psy5910         115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSG----IENFIINR  190 (225)
Q Consensus       115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~----l~~al~~R  190 (225)
                      ..-...           +..+..|+.+++....            ..  ..+|.|||..      +++    +++.+.+|
T Consensus       188 g~e~~t-----------~~~~~~l~~iin~r~~------------~~--~~~IiTsN~~------~~eL~~~~~~ri~sR  236 (268)
T PRK08116        188 GAERDT-----------EWAREKVYNIIDSRYR------------KG--LPTIVTTNLS------LEELKNQYGKRIYDR  236 (268)
T ss_pred             cCCCCC-----------HHHHHHHHHHHHHHHH------------CC--CCEEEECCCC------HHHHHHHHhHHHHHH
Confidence            642211           2257788888885321            11  4567777762      223    45677777


Q ss_pred             ccc---ccccccccc
Q psy5910         191 INQ---ETNFLEKLN  202 (225)
Q Consensus       191 f~~---~i~~~~~~~  202 (225)
                      +-.   .|.++-++-
T Consensus       237 l~e~~~~v~~~g~d~  251 (268)
T PRK08116        237 ILEMCTPVENEGKSY  251 (268)
T ss_pred             HHHcCEEEEeeCcCh
Confidence            522   255555553

>KOG2035|consensus

Probab=98.91  E-value=7.5e-09  Score=81.85  Aligned_cols=125  Identities=18%  Similarity=0.268  Sum_probs=76.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh-CC--Ce--------------------------EEeccCcccccCccCC-cHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII-NV--PI--------------------------IVVDATSFTEAGYVGD-DVESII   90 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~-~~--~~--------------------------~~~~~~~~~~~~~~g~-~~~~~~   90 (225)
                      +|+++|||+|+||-|.+.++-+++ |.  +-                          +.+++++   .|+... -+...+
T Consensus        35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSD---aG~~DRvViQell  111 (351)
T KOG2035|consen   35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSD---AGNYDRVVIQELL  111 (351)
T ss_pred             CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhh---cCcccHHHHHHHH
Confidence            699999999999999999888877 21  11                          1111111   122211 112233


Q ss_pred             HHHHHhcchhhh-hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEec
Q psy5910          91 QKLLHECDYDVE-LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDT  169 (225)
Q Consensus        91 ~~~~~~~~~~~~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~t  169 (225)
                      ..+.+...-... +..-.|++|.|+|++..+             +|.+|.+-||.+...               ..+|..
T Consensus       112 KevAQt~qie~~~qr~fKvvvi~ead~LT~d-------------AQ~aLRRTMEkYs~~---------------~RlIl~  163 (351)
T KOG2035|consen  112 KEVAQTQQIETQGQRPFKVVVINEADELTRD-------------AQHALRRTMEKYSSN---------------CRLILV  163 (351)
T ss_pred             HHHHhhcchhhccccceEEEEEechHhhhHH-------------HHHHHHHHHHHHhcC---------------ceEEEE
Confidence            333222211111 123469999999999977             899999999975322               333333


Q ss_pred             CcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         170 TNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       170 tn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .|.       .+.+=+++++|. ..|..|.|+.+.
T Consensus       164 cns-------~SriIepIrSRC-l~iRvpaps~ee  190 (351)
T KOG2035|consen  164 CNS-------TSRIIEPIRSRC-LFIRVPAPSDEE  190 (351)
T ss_pred             ecC-------cccchhHHhhhe-eEEeCCCCCHHH
Confidence            333       557889999983 337777777765

>PRK10365 transcriptional regulatory protein ZraR; Provisional

Probab=98.90  E-value=5.4e-09  Score=90.40  Aligned_cols=87  Identities=22%  Similarity=0.426  Sum_probs=63.8

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHh-----------cchhhhhh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHE-----------CDYDVELA  104 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~  104 (225)
                      ...+++++|++||||+++|++++...   +.+|+.++|..+...        ..-..+|..           ..+.+...
T Consensus       161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~--------~~~~~lfg~~~~~~~~~~~~~~g~~~~a  232 (441)
T PRK10365        161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNES--------LLESELFGHEKGAFTGADKRREGRFVEA  232 (441)
T ss_pred             CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH--------HHHHHhcCCCCCCcCCCCcCCCCceeEC
Confidence            34578999999999999999998776   478999999876321        111111111           11233456


Q ss_pred             CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910         105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN  146 (225)
Q Consensus       105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~  146 (225)
                      .++++||||++.+.+.             .|..|+..++...
T Consensus       233 ~~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~  261 (441)
T PRK10365        233 DGGTLFLDEIGDISPM-------------MQVRLLRAIQERE  261 (441)
T ss_pred             CCCEEEEeccccCCHH-------------HHHHHHHHHccCc
Confidence            7899999999999988             8999999998643

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.89  E-value=4.2e-09  Score=91.00  Aligned_cols=128  Identities=17%  Similarity=0.304  Sum_probs=75.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHH---HHHHHHHHhcchhhhhhCCCEEEEc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVE---SIIQKLLHECDYDVELAEQSIIYID  112 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~vl~iD  112 (225)
                      .+++|+|++|||||+|++++++.+     +..++++++.++.. .+... ..   ..+.....      ......+|+||
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~-~~~~~-l~~~~~~~~~~~~------~~~~~dvLiID  213 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFAR-KAVDI-LQKTHKEIEQFKN------EICQNDVLIID  213 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH-HHHHH-HHHhhhHHHHHHH------HhccCCEEEEe
Confidence            468899999999999999999865     35677777765532 11100 00   01111111      11355699999


Q ss_pred             chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910         113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN  192 (225)
Q Consensus       113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~  192 (225)
                      |++.+..+           +..+..|..+++.....            .  -.+|.|+|..-   .....+++.+.+||.
T Consensus       214 Diq~l~~k-----------~~~~e~lf~l~N~~~~~------------~--k~iIltsd~~P---~~l~~l~~rL~SR~~  265 (450)
T PRK14087        214 DVQFLSYK-----------EKTNEIFFTIFNNFIEN------------D--KQLFFSSDKSP---ELLNGFDNRLITRFN  265 (450)
T ss_pred             ccccccCC-----------HHHHHHHHHHHHHHHHc------------C--CcEEEECCCCH---HHHhhccHHHHHHHh
Confidence            99988744           12566777777642210            1  23344444310   011346788999996


Q ss_pred             cc--cccccccccc
Q psy5910         193 QE--TNFLEKLNNN  204 (225)
Q Consensus       193 ~~--i~~~~~~~~~  204 (225)
                      --  +.+..|+.+.
T Consensus       266 ~Gl~~~L~~pd~e~  279 (450)
T PRK14087        266 MGLSIAIQKLDNKT  279 (450)
T ss_pred             CCceeccCCcCHHH
Confidence            43  7777777765

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.88  E-value=9.8e-09  Score=73.76  Aligned_cols=88  Identities=23%  Similarity=0.411  Sum_probs=49.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh--------CCCeEEeccCccccc-----------Ccc---CCcHHHHHHHHHHhc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII--------NVPIIVVDATSFTEA-----------GYV---GDDVESIIQKLLHEC   97 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~--------~~~~~~~~~~~~~~~-----------~~~---g~~~~~~~~~~~~~~   97 (225)
                      .+.++++||||+|||++++.+++.+        ..+++.+++......           +..   +.+.......+.+. 
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~-   82 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDA-   82 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHH-
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHH-
Confidence            3467799999999999999999887        566777766443210           000   11122222222111 


Q ss_pred             chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910          98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE  143 (225)
Q Consensus        98 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~  143 (225)
                         +......+|+|||+|.+. +           ....+.|..+++
T Consensus        83 ---l~~~~~~~lviDe~~~l~-~-----------~~~l~~l~~l~~  113 (131)
T PF13401_consen   83 ---LDRRRVVLLVIDEADHLF-S-----------DEFLEFLRSLLN  113 (131)
T ss_dssp             ---HHHCTEEEEEEETTHHHH-T-----------HHHHHHHHHHTC
T ss_pred             ---HHhcCCeEEEEeChHhcC-C-----------HHHHHHHHHHHh
Confidence               122233599999999984 2           126677766666

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.87  E-value=6.8e-08  Score=75.72  Aligned_cols=45  Identities=29%  Similarity=0.674  Sum_probs=39.6

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|....+++++++....+.++ +.||||||||||.+.||...
T Consensus         8 ~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~   53 (248)
T COG1116           8 GVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLE   53 (248)
T ss_pred             eeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4566677788899999999999888 99999999999999999766

>PRK06620 hypothetical protein; Validated

Probab=98.86  E-value=9.3e-09  Score=80.38  Aligned_cols=26  Identities=31%  Similarity=0.569  Sum_probs=23.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      +.++|+||||||||+|++++++..+.
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~   70 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNA   70 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCC
Confidence            56889999999999999999987654

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.86  E-value=3.1e-09  Score=83.38  Aligned_cols=125  Identities=20%  Similarity=0.319  Sum_probs=71.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE  113 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE  113 (225)
                      +++|+||+|+|||.|.+++++..     +..++++++..+...   ........    .+..      .-..-.+++||+
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~----~~~~------~~~~~DlL~iDD  105 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIE----EFKD------RLRSADLLIIDD  105 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHH----HHHH------HHCTSSEEEEET
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccch----hhhh------hhhcCCEEEEec
Confidence            57899999999999999999875     556778877665321   00001111    1111      123567999999


Q ss_pred             hhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910         114 IDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ  193 (225)
Q Consensus       114 id~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~  193 (225)
                      ++.+..+           ...+..|+.+++.....            .  ..+|.|++..-   .....+++.+.+||.-
T Consensus       106 i~~l~~~-----------~~~q~~lf~l~n~~~~~------------~--k~li~ts~~~P---~~l~~~~~~L~SRl~~  157 (219)
T PF00308_consen  106 IQFLAGK-----------QRTQEELFHLFNRLIES------------G--KQLILTSDRPP---SELSGLLPDLRSRLSW  157 (219)
T ss_dssp             GGGGTTH-----------HHHHHHHHHHHHHHHHT------------T--SEEEEEESS-T---TTTTTS-HHHHHHHHC
T ss_pred             chhhcCc-----------hHHHHHHHHHHHHHHhh------------C--CeEEEEeCCCC---ccccccChhhhhhHhh
Confidence            9998755           23678888888753211            1  22333333310   1123578889999866


Q ss_pred             c--cccccccccc
Q psy5910         194 E--TNFLEKLNNN  204 (225)
Q Consensus       194 ~--i~~~~~~~~~  204 (225)
                      -  +....|+.+.
T Consensus       158 Gl~~~l~~pd~~~  170 (219)
T PF00308_consen  158 GLVVELQPPDDED  170 (219)
T ss_dssp             SEEEEE----HHH
T ss_pred             cchhhcCCCCHHH
Confidence            4  6666666554

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>KOG0477|consensus

Probab=98.85  E-value=5.4e-10  Score=96.64  Aligned_cols=169  Identities=17%  Similarity=0.234  Sum_probs=99.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecc--cceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKS--KNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~--~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      -.|+|...+|..+.-++   +++.....+  ..+ ...-+|||.|.||||||.+.+.+++.....++.---+... .|..
T Consensus       449 PsIyGh~~VK~AvAlaL---fGGv~kn~~~khkv-RGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASa-vGLT  523 (854)
T KOG0477|consen  449 PSIYGHEDVKRAVALAL---FGGVPKNPGGKHKV-RGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASA-VGLT  523 (854)
T ss_pred             chhhchHHHHHHHHHHH---hcCCccCCCCCcee-ccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccc-ccee
Confidence            35789999998886655   222211111  111 2234899999999999999999999876654443221110 1111


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                      ..-....+..-|....|.+-.+..+|-+|||+|+|..+.             ...+.++|++...++...+.......+ 
T Consensus       524 a~v~KdPvtrEWTLEaGALVLADkGvClIDEFDKMndqD-------------RtSIHEAMEQQSISISKAGIVtsLqAr-  589 (854)
T KOG0477|consen  524 AYVRKDPVTREWTLEAGALVLADKGVCLIDEFDKMNDQD-------------RTSIHEAMEQQSISISKAGIVTSLQAR-  589 (854)
T ss_pred             EEEeeCCccceeeeccCeEEEccCceEEeehhhhhcccc-------------cchHHHHHHhcchhhhhhhHHHHHHhh-
Confidence            110011112222222234445688999999999998662             456677777766666555444333334 


Q ss_pred             ceeEEecCcce---e----eccCccccHHHHHHhhcccc
Q psy5910         163 QVFNIDTTNIL---F----IAGGAFSGIENFIINRINQE  194 (225)
Q Consensus       163 ~~~~i~ttn~~---~----i~~~~~~~l~~al~~Rf~~~  194 (225)
                       ..+|+++|.+   +    -+..| -++-+.+++|||..
T Consensus       590 -ctvIAAanPigGRY~~s~tFaqN-V~ltePIlSRFDiL  626 (854)
T KOG0477|consen  590 -CTVIAAANPIGGRYNPSLTFAQN-VDLTEPILSRFDIL  626 (854)
T ss_pred             -hhhheecCCCCCccCCccchhhc-cccccchhhhccee
Confidence             6677888773   1    00001 26888999999875

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.84  E-value=5.6e-09  Score=82.94  Aligned_cols=116  Identities=14%  Similarity=0.247  Sum_probs=67.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI  114 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  114 (225)
                      .+++|+|+||||||+|+.++++.+   +..++.++..++...   .|...  ......++..      .....+|+|||+
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~--~~~~~~~l~~------l~~~dlLvIDDi  171 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNS--ETSEEQLLND------LSNVDLLVIDEI  171 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhc--cccHHHHHHH------hccCCEEEEeCC
Confidence            478999999999999999999988   667777766555320   01000  0001111111      135679999999


Q ss_pred             hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910         115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRI  191 (225)
Q Consensus       115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf  191 (225)
                      +.....           +-....|.++++....            ..  .-+|.|||...--.  .+.+++.+.+|+
T Consensus       172 g~~~~s-----------~~~~~~l~~Ii~~Ry~------------~~--~~tiitSNl~~~~l--~~~~g~ri~sRl  221 (244)
T PRK07952        172 GVQTES-----------RYEKVIINQIVDRRSS------------SK--RPTGMLTNSNMEEM--TKLLGERVMDRM  221 (244)
T ss_pred             CCCCCC-----------HHHHHHHHHHHHHHHh------------CC--CCEEEeCCCCHHHH--HHHhChHHHHHH
Confidence            886532           1134567778875321            01  45677888722000  123456667777

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=98.84  E-value=4.3e-09  Score=74.24  Aligned_cols=54  Identities=28%  Similarity=0.445  Sum_probs=43.7

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      |.+.++||+-|++.+..++..++...        ..+++-|| |+||||||||.+++.||+.+
T Consensus        23 L~~~l~GQhla~~~v~~ai~~~l~~~--------~p~KpLVlSfHG~tGtGKn~v~~liA~~l   77 (127)
T PF06309_consen   23 LQRNLFGQHLAVEVVVNAIKGHLANP--------NPRKPLVLSFHGWTGTGKNFVSRLIAEHL   77 (127)
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHcCC--------CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence            67889999999999999986665432        13334555 99999999999999999986

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.83  E-value=1.6e-08  Score=81.96  Aligned_cols=155  Identities=18%  Similarity=0.276  Sum_probs=100.6

Q ss_pred             ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC-CeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhh
Q psy5910          27 RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV-PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELA  104 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  104 (225)
                      ..+.+++.++....+.+| |+|+||||||+++++|...+.. +.....+..+    |.|.+..........+    ++..
T Consensus        17 ~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~----f~g~~l~~l~~~~~~~----iRG~   88 (316)
T COG0444          17 VVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEIL----FDGKDLLSLSEKELRK----IRGK   88 (316)
T ss_pred             cEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEE----ECCcccccCCHHHHHh----hcCc
Confidence            467889999999999999 9999999999999999999873 3444444222    4554422222221111    1223


Q ss_pred             CCCEEEEcchhhhcccccccC--------CCCC-ChHHHHHHHHHHHhcCCcCccccccccCCCCCCce--------eEE
Q psy5910         105 EQSIIYIDEIDKISKKTDVVS--------GKDV-SGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV--------FNI  167 (225)
Q Consensus       105 ~~~vl~iDEid~l~~~~~~~~--------~~~~-~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~--------~~i  167 (225)
                      .-+.||-|...++.|-.....        +... ..+++.+...++|+......+......||++-.+-        +.+
T Consensus        89 ~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmal  168 (316)
T COG0444          89 EIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMAL  168 (316)
T ss_pred             eEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHH
Confidence            457888888888877654332        2333 34556778888898877777777778888876322        224


Q ss_pred             ecCcceeeccCccccHHHHHHh
Q psy5910         168 DTTNILFIAGGAFSGIENFIIN  189 (225)
Q Consensus       168 ~ttn~~~i~~~~~~~l~~al~~  189 (225)
                      +..-.+.|++.-...||..+..
T Consensus       169 a~~P~LlIADEPTTALDvt~Qa  190 (316)
T COG0444         169 ALNPKLLIADEPTTALDVTVQA  190 (316)
T ss_pred             hCCCCEEEeCCCcchhhHHHHH
Confidence            4444556777655566665444

>KOG0990|consensus

Probab=98.82  E-value=2.3e-09  Score=86.25  Aligned_cols=114  Identities=21%  Similarity=0.249  Sum_probs=72.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCC------eEEeccCcccccCccCCcHHHHHHHHHHhcch--hhh-hhCCCEEEE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVP------IIVVDATSFTEAGYVGDDVESIIQKLLHECDY--DVE-LAEQSIIYI  111 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~-~~~~~vl~i  111 (225)
                      ++.|+|||||||||+...+.|+.+-.+      +..++.++-     .|-++-..--..|.....  ... ......+++
T Consensus        63 Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~-----rgid~vr~qi~~fast~~~~~fst~~~fKlvIL  137 (360)
T KOG0990|consen   63 PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD-----RGIDPVRQQIHLFASTQQPTTYSTHAAFKLVIL  137 (360)
T ss_pred             CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc-----cCCcchHHHHHHHHhhccceeccccCceeEEEe
Confidence            499999999999999999999887543      112233221     222222222223332210  001 125679999


Q ss_pred             cchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhc
Q psy5910         112 DEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRI  191 (225)
Q Consensus       112 DEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf  191 (225)
                      ||+|.+...             +|++|.+.++..+..               ++++..+|.       +..+.+++++||
T Consensus       138 DEADaMT~~-------------AQnALRRviek~t~n---------------~rF~ii~n~-------~~ki~pa~qsRc  182 (360)
T KOG0990|consen  138 DEADAMTRD-------------AQNALRRVIEKYTAN---------------TRFATISNP-------PQKIHPAQQSRC  182 (360)
T ss_pred             cchhHhhHH-------------HHHHHHHHHHHhccc---------------eEEEEeccC-------hhhcCchhhccc
Confidence            999999977             899999988865422               444444455       568899999976


Q ss_pred             ccc
Q psy5910         192 NQE  194 (225)
Q Consensus       192 ~~~  194 (225)
                      -+.
T Consensus       183 trf  185 (360)
T KOG0990|consen  183 TRF  185 (360)
T ss_pred             ccC
Confidence            443

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.1e-08  Score=88.11  Aligned_cols=137  Identities=28%  Similarity=0.444  Sum_probs=102.1

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      .+..+++++||||||||+++++++.. +..+..+++..... +|.|.. .......+..+    ....++++++||++.+
T Consensus        16 ~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~a----~~~~~~ii~~d~~~~~   88 (494)
T COG0464          16 EPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILS-KYVGES-ELRLRELFEEA----EKLAPSIIFIDEIDAL   88 (494)
T ss_pred             CCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhh-hhhhHH-HHHHHHHHHHH----HHhCCCeEeechhhhc
Confidence            34568999999999999999999998 55556666665553 566665 44556666655    4456799999999999


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hccccc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQET  195 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i  195 (225)
                      .+.+..  ........+...++..+++..             ... +.++..+|.       +..+++++++  ||++.+
T Consensus        89 ~~~~~~--~~~~~~~~v~~~l~~~~d~~~-------------~~~-v~~~~~~~~-------~~~~~~a~~~~~~~~~~~  145 (494)
T COG0464          89 APKRSS--DQGEVERRVVAQLLALMDGLK-------------RGQ-VIVIGATNR-------PDGLDPAKRRPGRFDREI  145 (494)
T ss_pred             ccCccc--cccchhhHHHHHHHHhccccc-------------CCc-eEEEeecCC-------ccccChhHhCccccceee
Confidence            998766  333445567888888888753             112 566667777       6789999999  999998


Q ss_pred             ccccccccc
Q psy5910         196 NFLEKLNNN  204 (225)
Q Consensus       196 ~~~~~~~~~  204 (225)
                      ....|+...
T Consensus       146 ~~~~~~~~~  154 (494)
T COG0464         146 EVNLPDEAG  154 (494)
T ss_pred             ecCCCCHHH
Confidence            888888754

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.80  E-value=9.7e-08  Score=74.97  Aligned_cols=58  Identities=28%  Similarity=0.507  Sum_probs=44.9

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcc
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSF   76 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~   76 (225)
                      +.+...|.....+++.++..+.+.++ |+|||||||||+.+.|-+....  --+.+++.++
T Consensus         5 ~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i   65 (309)
T COG1125           5 ENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDI   65 (309)
T ss_pred             eeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeec
Confidence            34566677788889999999998888 9999999999999999887722  2455555444

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.80  E-value=1.8e-08  Score=80.71  Aligned_cols=117  Identities=21%  Similarity=0.321  Sum_probs=71.1

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcc---hhhh-hhCCCEEEEc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECD---YDVE-LAEQSIIYID  112 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~---~~~~-~~~~~vl~iD  112 (225)
                      ..+++|+||||+|||.||-+|++.+   |.++..++..++...          +...+....   .... .....+|+||
T Consensus       105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~----------Lk~~~~~~~~~~~l~~~l~~~dlLIiD  174 (254)
T COG1484         105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSK----------LKAAFDEGRLEEKLLRELKKVDLLIID  174 (254)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH----------HHHHHhcCchHHHHHHHhhcCCEEEEe
Confidence            4589999999999999999999888   677777777665321          111111100   0011 2466799999


Q ss_pred             chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc---cccHHHHHHh
Q psy5910         113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA---FSGIENFIIN  189 (225)
Q Consensus       113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~---~~~l~~al~~  189 (225)
                      |+.......           ...+.+.+++......            .  .. +.|||..+-.+..   .....+++.+
T Consensus       175 DlG~~~~~~-----------~~~~~~~q~I~~r~~~------------~--~~-~~tsN~~~~~~~~~~~~~~~~e~~~d  228 (254)
T COG1484         175 DIGYEPFSQ-----------EEADLLFQLISRRYES------------R--SL-IITSNLSFGEWDELFGDDALTEALLD  228 (254)
T ss_pred             cccCccCCH-----------HHHHHHHHHHHHHHhh------------c--cc-eeecCCChHHHHhhccCchhHHHHHH
Confidence            998866441           1345566656532211            1  23 7888887644431   1125788888


Q ss_pred             hcc
Q psy5910         190 RIN  192 (225)
Q Consensus       190 Rf~  192 (225)
                      |..
T Consensus       229 Ri~  231 (254)
T COG1484         229 RIL  231 (254)
T ss_pred             HHH
Confidence            753

>KOG0741|consensus

Probab=98.79  E-value=3.6e-08  Score=84.30  Aligned_cols=136  Identities=20%  Similarity=0.276  Sum_probs=81.7

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK  119 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~  119 (225)
                      ...+||.||||+|||+||-.+|...+.||+.+-...-. .|+.-..--..+...|..+    .+..-+|+++|+++++..
T Consensus       538 lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m-iG~sEsaKc~~i~k~F~DA----YkS~lsiivvDdiErLiD  612 (744)
T KOG0741|consen  538 LVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM-IGLSESAKCAHIKKIFEDA----YKSPLSIIVVDDIERLLD  612 (744)
T ss_pred             ceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc-cCccHHHHHHHHHHHHHHh----hcCcceEEEEcchhhhhc
Confidence            35799999999999999999999999999987554322 1232221123455566654    445668999999998852


Q ss_pred             cccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHH-HHHhhcccccccc
Q psy5910         120 KTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIEN-FIINRINQETNFL  198 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~-al~~Rf~~~i~~~  198 (225)
                      --..   .+.-+.-+.++|+-+|...            |.+..+.++++||..       .+-|.+ .+.+.|+-.+..|
T Consensus       613 ~vpI---GPRfSN~vlQaL~VllK~~------------ppkg~kLli~~TTS~-------~~vL~~m~i~~~F~~~i~Vp  670 (744)
T KOG0741|consen  613 YVPI---GPRFSNLVLQALLVLLKKQ------------PPKGRKLLIFGTTSR-------REVLQEMGILDCFSSTIHVP  670 (744)
T ss_pred             cccc---CchhhHHHHHHHHHHhccC------------CCCCceEEEEecccH-------HHHHHHcCHHHhhhheeecC
Confidence            1100   0112223667777777642            222212666666654       222222 2445676666666


Q ss_pred             cccc
Q psy5910         199 EKLN  202 (225)
Q Consensus       199 ~~~~  202 (225)
                      .-..
T Consensus       671 nl~~  674 (744)
T KOG0741|consen  671 NLTT  674 (744)
T ss_pred             ccCc
Confidence            5554

>KOG1942|consensus

Probab=98.79  E-value=1.3e-08  Score=81.22  Aligned_cols=61  Identities=21%  Similarity=0.360  Sum_probs=40.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~   74 (225)
                      .-++||..+.+..--.+.....         -....+.+||.||||||||.+|-+|++++|  .||..+.++
T Consensus        38 ~g~vGQ~~AReAagiivdlik~---------KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgS  100 (456)
T KOG1942|consen   38 AGFVGQENAREAAGIIVDLIKS---------KKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGS  100 (456)
T ss_pred             cccccchhhhhhhhHHHHHHHh---------hhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccch
Confidence            4578998887665332211110         013446899999999999999999999994  455554443

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.77  E-value=2.4e-08  Score=82.76  Aligned_cols=117  Identities=24%  Similarity=0.311  Sum_probs=68.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc----CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA----GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE  113 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE  113 (225)
                      .+++|+||+|||||+||.++|+.+   +..+++++..++...    .+.... .  ....+.      ....--+|+||+
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~-~--~~~~~~------~l~~~DLLIIDD  254 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDK-E--LEEVYD------LLINCDLLIIDD  254 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccch-h--HHHHHH------HhccCCEEEEec
Confidence            689999999999999999999987   666777777655321    000000 0  000011      112457999999


Q ss_pred             hhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910         114 IDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ  193 (225)
Q Consensus       114 id~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~  193 (225)
                      +......           ...+..|+.+++.....            .  .-+|.|||...-..  .+.+++.+.+|+..
T Consensus       255 lG~e~~t-----------~~~~~~Lf~iin~R~~~------------~--k~tIiTSNl~~~el--~~~~~eri~SRL~~  307 (329)
T PRK06835        255 LGTEKIT-----------EFSKSELFNLINKRLLR------------Q--KKMIISTNLSLEEL--LKTYSERISSRLLG  307 (329)
T ss_pred             cCCCCCC-----------HHHHHHHHHHHHHHHHC------------C--CCEEEECCCCHHHH--HHHHhHHHHHHHHc
Confidence            9776533           12567788888753210            1  34667777621000  12246678888743

>KOG0481|consensus

Probab=98.74  E-value=3.9e-09  Score=89.69  Aligned_cols=170  Identities=17%  Similarity=0.221  Sum_probs=102.2

Q ss_pred             cceeechhhHHhhheeeeEecccceEe--ecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFL--LKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~--~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      .-.|+|.++.|+.+.-.+   +++.+.  .++..+ ...-+|||.|.|||.||.|.+-+-+.....++.--.+.. .+|.
T Consensus       330 APSIfG~~DiKkAiaClL---FgGsrK~LpDg~~l-RGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSS-AAGL  404 (729)
T KOG0481|consen  330 APSIFGHEDIKKAIACLL---FGGSRKRLPDGVTL-RGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSS-AAGL  404 (729)
T ss_pred             CchhcCchhHHHHHHHHh---hcCccccCCCccee-ccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcc-cccc
Confidence            345789999998886544   333322  222222 223489999999999999999998876554443222111 1121


Q ss_pred             cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910          82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                      ...-.......-|-...+.+-.+.++|+.|||+|+|...             -.-++.++||....++...+-......+
T Consensus       405 TASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~-------------DRVAIHEAMEQQTISIAKAGITT~LNSR  471 (729)
T KOG0481|consen  405 TASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMRED-------------DRVAIHEAMEQQTISIAKAGITTTLNSR  471 (729)
T ss_pred             eeeEEecCCcceEEEecceEEEecCCEEEeehhhccCch-------------hhhHHHHHHHhhhHHHhhhcceeeecch
Confidence            111000001111111123334568999999999999866             2457777888766666555544433344


Q ss_pred             CceeEEecCcceeeccC-------ccccHHHHHHhhcccc
Q psy5910         162 PQVFNIDTTNILFIAGG-------AFSGIENFIINRINQE  194 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~-------~~~~l~~al~~Rf~~~  194 (225)
                        .-++++.|.+|--+.       |. +.-+.+++|||..
T Consensus       472 --tSVLAAANpvfGRyDd~Kt~~dNI-Df~~TILSRFDmI  508 (729)
T KOG0481|consen  472 --TSVLAAANPVFGRYDDTKTGEDNI-DFMPTILSRFDMI  508 (729)
T ss_pred             --hhhhhhcCCccccccccCCccccc-chhhhHhhhccEE
Confidence              677788888774332       22 4668899999987

>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]

Probab=98.74  E-value=1.3e-08  Score=81.40  Aligned_cols=87  Identities=24%  Similarity=0.480  Sum_probs=62.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHH------hCCCeEEeccCcccccCccCCcH-HHHH---HHHH----HhcchhhhhhC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKI------INVPIIVVDATSFTEAGYVGDDV-ESII---QKLL----HECDYDVELAE  105 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~------~~~~~~~~~~~~~~~~~~~g~~~-~~~~---~~~~----~~~~~~~~~~~  105 (225)
                      ..++||.||+|.|||.||+.|.+.      +..+|+.+||..+..     +.. +..+   ...|    ..-.+.++...
T Consensus       208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg-----d~amsalfghvkgaftga~~~r~gllrsad  282 (531)
T COG4650         208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG-----DTAMSALFGHVKGAFTGARESREGLLRSAD  282 (531)
T ss_pred             cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC-----chHHHHHHhhhccccccchhhhhhhhccCC
Confidence            458999999999999999988753      367899999988743     211 1111   1111    11124566779


Q ss_pred             CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910         106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus       106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                      ++++|+|||..+...             -|..|++.+++
T Consensus       283 ggmlfldeigelgad-------------eqamllkaiee  308 (531)
T COG4650         283 GGMLFLDEIGELGAD-------------EQAMLLKAIEE  308 (531)
T ss_pred             CceEehHhhhhcCcc-------------HHHHHHHHHHh
Confidence            999999999999977             47889999985

>TIGR00602 rad24 checkpoint protein rad24

Probab=98.73  E-value=2e-08  Score=89.47  Aligned_cols=56  Identities=20%  Similarity=0.386  Sum_probs=39.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      +.++|+++.++.|..++....          +....+. ++|+||||||||++++.+|+.++..+..
T Consensus        84 del~~~~~ki~~l~~~l~~~~----------~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E  140 (637)
T TIGR00602        84 HELAVHKKKIEEVETWLKAQV----------LENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE  140 (637)
T ss_pred             HHhcCcHHHHHHHHHHHHhcc----------cccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence            346899988888877663221          1112233 6699999999999999999998765433

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.72  E-value=8.5e-08  Score=73.41  Aligned_cols=45  Identities=29%  Similarity=0.597  Sum_probs=39.3

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+..+|+..++++++++..+.+.|- |+|||||||||+.|++-+..
T Consensus        12 ~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          12 DLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             ceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence            4567778888889999999998888 99999999999999998765

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=98.72  E-value=6.2e-08  Score=78.52  Aligned_cols=122  Identities=17%  Similarity=0.146  Sum_probs=71.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc--------Ccc---cccCcc-CCcHHHHHHHHHHhcchhhhhhCCCEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA--------TSF---TEAGYV-GDDVESIIQKLLHECDYDVELAEQSII  109 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~--------~~~---~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~vl  109 (225)
                      .+||+||+|+||+++|..+|+.+-+.-..-.|        .++   ...+.. .-.+. .++.+.+...........-|+
T Consensus        21 AyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~id-qiR~l~~~~~~~p~e~~~kv~   99 (290)
T PRK05917         21 AIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIE-TPRAIKKQIWIHPYESPYKIY   99 (290)
T ss_pred             eEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHH-HHHHHHHHHhhCccCCCceEE
Confidence            56799999999999999999988542100001        111   000000 01112 233333332111122355799


Q ss_pred             EEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh
Q psy5910         110 YIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN  189 (225)
Q Consensus       110 ~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~  189 (225)
                      +||++|++...             ++++|++.||+             |..+ .++++.|+|        ++.+.+.+++
T Consensus       100 ii~~ad~mt~~-------------AaNaLLK~LEE-------------Pp~~-~~fiL~~~~--------~~~ll~TI~S  144 (290)
T PRK05917        100 IIHEADRMTLD-------------AISAFLKVLED-------------PPQH-GVIILTSAK--------PQRLPPTIRS  144 (290)
T ss_pred             EEechhhcCHH-------------HHHHHHHHhhc-------------CCCC-eEEEEEeCC--------hhhCcHHHHh
Confidence            99999999987             89999999997             2233 133333333        4689999999


Q ss_pred             hcccccccccc
Q psy5910         190 RINQETNFLEK  200 (225)
Q Consensus       190 Rf~~~i~~~~~  200 (225)
                      |+.. +.|+.+
T Consensus       145 Rcq~-~~~~~~  154 (290)
T PRK05917        145 RSLS-IHIPME  154 (290)
T ss_pred             cceE-EEccch
Confidence            8533 445443

>PF13173 AAA_14: AAA domain

Probab=98.71  E-value=7.6e-08  Score=69.14  Aligned_cols=70  Identities=29%  Similarity=0.425  Sum_probs=45.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKIS  118 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~  118 (225)
                      +.++|+||.||||||+++.+++.+.  ..++++++.+.......  . .. +...+.+.    ......++||||++.+.
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~--~-~~-~~~~~~~~----~~~~~~~i~iDEiq~~~   74 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLA--D-PD-LLEYFLEL----IKPGKKYIFIDEIQYLP   74 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHh--h-hh-hHHHHHHh----hccCCcEEEEehhhhhc
Confidence            4567999999999999999998875  67888887665321100  0 00 11111111    11267899999999985

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.70  E-value=4.2e-08  Score=75.18  Aligned_cols=46  Identities=22%  Similarity=0.498  Sum_probs=40.3

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+..+|+....++++++...++.++ ++|||||||||+.|++...-
T Consensus         6 ~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE   52 (240)
T COG1126           6 KNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE   52 (240)
T ss_pred             EeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCc
Confidence            35677888899999999999999888 99999999999999998543

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.66  E-value=1.9e-07  Score=75.45  Aligned_cols=25  Identities=36%  Similarity=0.667  Sum_probs=22.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.++++||+|+|||++++.+++.+.
T Consensus        44 ~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        44 GFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            3577999999999999999999875

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK06921 hypothetical protein; Provisional

Probab=98.66  E-value=1.3e-07  Score=76.31  Aligned_cols=36  Identities=31%  Similarity=0.539  Sum_probs=28.3

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATS   75 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~   75 (225)
                      ..+++|+||||||||+|+.+|++.+    +..+++++..+
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~  156 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE  156 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence            3579999999999999999999876    34555555433

>PRK09087 hypothetical protein; Validated

Probab=98.64  E-value=7.1e-08  Score=76.07  Aligned_cols=111  Identities=15%  Similarity=0.216  Sum_probs=62.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  120 (225)
                      +.++|+||+|||||+|++++++..+..  +++...+.             ...+..       ....+++||+++.+...
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~-------------~~~~~~-------~~~~~l~iDDi~~~~~~  102 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG-------------SDAANA-------AAEGPVLIEDIDAGGFD  102 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc-------------hHHHHh-------hhcCeEEEECCCCCCCC
Confidence            458899999999999999999875443  33332211             111111       12358999999976422


Q ss_pred             ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc--cccc
Q psy5910         121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE--TNFL  198 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~--i~~~  198 (225)
                                    +..|+.++.....           ...  .+++.++..+    .......+.+++||.--  +.+.
T Consensus       103 --------------~~~lf~l~n~~~~-----------~g~--~ilits~~~p----~~~~~~~~dL~SRl~~gl~~~l~  151 (226)
T PRK09087        103 --------------ETGLFHLINSVRQ-----------AGT--SLLMTSRLWP----SSWNVKLPDLKSRLKAATVVEIG  151 (226)
T ss_pred             --------------HHHHHHHHHHHHh-----------CCC--eEEEECCCCh----HHhccccccHHHHHhCCceeecC
Confidence                          3445555543210           001  3333333220    00123467789998643  7777


Q ss_pred             cccccc
Q psy5910         199 EKLNNN  204 (225)
Q Consensus       199 ~~~~~~  204 (225)
                      .|+.+.
T Consensus       152 ~pd~e~  157 (226)
T PRK09087        152 EPDDAL  157 (226)
T ss_pred             CCCHHH
Confidence            777655

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.63  E-value=2.7e-07  Score=71.98  Aligned_cols=35  Identities=29%  Similarity=0.551  Sum_probs=32.1

Q ss_pred             eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+++.++....+.++ |+||||||||||+|+++...
T Consensus        22 ~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~   57 (252)
T COG1124          22 ALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLE   57 (252)
T ss_pred             hhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhccc
Confidence            778889999999999 99999999999999999765

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.60  E-value=1.5e-07  Score=77.38  Aligned_cols=69  Identities=17%  Similarity=0.369  Sum_probs=44.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDE  113 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE  113 (225)
                      ..+++|+||+|||||.|+.++|+.+   +.++..+....+...   .+......    ..++.      .....+|+|||
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~----~~l~~------l~~~dlLiIDD  225 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVK----EKIDA------VKEAPVLMLDD  225 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHH----HHHHH------hcCCCEEEEec
Confidence            3589999999999999999999988   666666666544210   01101111    11111      23667999999


Q ss_pred             hhhhc
Q psy5910         114 IDKIS  118 (225)
Q Consensus       114 id~l~  118 (225)
                      +..-.
T Consensus       226 iG~e~  230 (306)
T PRK08939        226 IGAEQ  230 (306)
T ss_pred             CCCcc
Confidence            97654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.58  E-value=5.2e-07  Score=71.68  Aligned_cols=103  Identities=18%  Similarity=0.335  Sum_probs=64.6

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcccccCccCCcHHHHHHHHHHhc-------
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFTEAGYVGDDVESIIQKLLHEC-------   97 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-------   97 (225)
                      .+++++.++....+.++ |+|+|||||||++|.+.+.....  -+.+++.++..  +........+..++...       
T Consensus        26 v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~--~~~~~~~~~v~elL~~Vgl~~~~~  103 (268)
T COG4608          26 VKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITK--LSKEERRERVLELLEKVGLPEEFL  103 (268)
T ss_pred             eEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhh--cchhHHHHHHHHHHHHhCCCHHHh
Confidence            57788999999999999 99999999999999999877432  23344433321  11111112222222221       


Q ss_pred             -------------chhhh---hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910          98 -------------DYDVE---LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        98 -------------~~~~~---~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                                   +..++   ...|.+++.||.-++....            +|...+.+|..
T Consensus       104 ~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvS------------iqaqIlnLL~d  154 (268)
T COG4608         104 YRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVS------------VQAQILNLLKD  154 (268)
T ss_pred             hcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchh------------HHHHHHHHHHH
Confidence                         00111   3489999999988877542            66666666653

>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A

Probab=98.58  E-value=9.7e-08  Score=75.34  Aligned_cols=66  Identities=23%  Similarity=0.413  Sum_probs=47.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  120 (225)
                      +-.++||+|||||+..+.+|+.+|.+++.++|.+..+        ...+.+++.-.     ...++-+.|||++++...
T Consensus        34 ~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~--------~~~l~ril~G~-----~~~GaW~cfdefnrl~~~   99 (231)
T PF12774_consen   34 GGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD--------YQSLSRILKGL-----AQSGAWLCFDEFNRLSEE   99 (231)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS---------HHHHHHHHHHH-----HHHT-EEEEETCCCSSHH
T ss_pred             CCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc--------HHHHHHHHHHH-----hhcCchhhhhhhhhhhHH
Confidence            4558999999999999999999999999999987643        22233333221     235899999999999865

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.57  E-value=1.8e-07  Score=75.72  Aligned_cols=105  Identities=19%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEeccC
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---------VPIIVVDAT   74 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---------~~~~~~~~~   74 (225)
                      .++++|...+.+.+...- ..+..++.       ...+++||+|+||.|||++++...+...         .|++.+...
T Consensus        33 ~~rWIgY~~A~~~L~~L~-~Ll~~P~~-------~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P  104 (302)
T PF05621_consen   33 ADRWIGYPRAKEALDRLE-ELLEYPKR-------HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMP  104 (302)
T ss_pred             cCCeecCHHHHHHHHHHH-HHHhCCcc-------cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecC
Confidence            467888887776654421 11122111       2235899999999999999999997652         345555442


Q ss_pred             cccc-------------cCccC-CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910          75 SFTE-------------AGYVG-DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus        75 ~~~~-------------~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  120 (225)
                      .-.+             ..|.. .....    ........++..+.-+++|||++.+...
T Consensus       105 ~~p~~~~~Y~~IL~~lgaP~~~~~~~~~----~~~~~~~llr~~~vrmLIIDE~H~lLaG  160 (302)
T PF05621_consen  105 PEPDERRFYSAILEALGAPYRPRDRVAK----LEQQVLRLLRRLGVRMLIIDEFHNLLAG  160 (302)
T ss_pred             CCCChHHHHHHHHHHhCcccCCCCCHHH----HHHHHHHHHHHcCCcEEEeechHHHhcc
Confidence            2111             01111 11111    1111112234567889999999997643

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>KOG0479|consensus

Probab=98.56  E-value=9.7e-08  Score=82.48  Aligned_cols=167  Identities=18%  Similarity=0.233  Sum_probs=103.4

Q ss_pred             CcceeechhhHHhhheeeeEecccceEe-ecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFL-LKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      |.-.|+|.+.+|+.+.-.+   +++.+. +.+.+--...-++|++|.|-+.||.|.|.+.+.....+-.---+.. .-|.
T Consensus       299 LAPSI~GH~~vKkAillLL---lGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSS-GVGL  374 (818)
T KOG0479|consen  299 LAPSIYGHDYVKKAILLLL---LGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSS-GVGL  374 (818)
T ss_pred             cCcccccHHHHHHHHHHHH---hccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCC-Cccc
Confidence            4557899999998886544   333322 2222221223489999999999999999998876443221110000 0000


Q ss_pred             c------CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910          82 V------GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK  155 (225)
Q Consensus        82 ~------g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~  155 (225)
                      .      .++-+..+.      .+.+-.+..+|+.|||+|+|..-             =..++.++|++...++...+.-
T Consensus       375 TAAVTtD~eTGERRLE------AGAMVLADRGVVCIDEFDKMsDi-------------DRvAIHEVMEQqtVTIaKAGIH  435 (818)
T KOG0479|consen  375 TAAVTTDQETGERRLE------AGAMVLADRGVVCIDEFDKMSDI-------------DRVAIHEVMEQQTVTIAKAGIH  435 (818)
T ss_pred             eeEEeeccccchhhhh------cCceEEccCceEEehhcccccch-------------hHHHHHHHHhcceEEeEeccch
Confidence            0      011111111      12233458899999999999855             2568899999888877666644


Q ss_pred             cCCCCCCceeEEecCcceeeccC-c--c---ccHHHHHHhhcccc
Q psy5910         156 KNPSQNPQVFNIDTTNILFIAGG-A--F---SGIENFIINRINQE  194 (225)
Q Consensus       156 ~~~~~~~~~~~i~ttn~~~i~~~-~--~---~~l~~al~~Rf~~~  194 (225)
                      .....+  +-++++.|.+|--=. +  |   =.|++.+++|||..
T Consensus       436 asLNAR--CSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLl  478 (818)
T KOG0479|consen  436 ASLNAR--CSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLL  478 (818)
T ss_pred             hhhccc--eeeeeecCccccccCCCCChhhccCCcHHHHhhhcEE
Confidence            333444  889999999872211 1  1   25899999999887

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=98.52  E-value=8.2e-07  Score=70.65  Aligned_cols=123  Identities=24%  Similarity=0.224  Sum_probs=72.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc-----------ccccCcc---C--CcHHHHHHHHHHhcchhh-hh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS-----------FTEAGYV---G--DDVESIIQKLLHECDYDV-EL  103 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~-----------~~~~~~~---g--~~~~~~~~~~~~~~~~~~-~~  103 (225)
                      ..+||+||+|+||..+|.++|+.+-+.--.-.|+.           .-+--+.   +  -. ...++.+.+...... ..
T Consensus         8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~-id~ir~l~~~l~~~s~e~   86 (261)
T PRK05818          8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIK-KEDALSIINKLNRPSVES   86 (261)
T ss_pred             cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCC-HHHHHHHHHHHccCchhc
Confidence            36779999999999999999988733210001110           0000010   0  11 112233333221111 11


Q ss_pred             hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccH
Q psy5910         104 AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGI  183 (225)
Q Consensus       104 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l  183 (225)
                      ...-|++|+++|++...             +.++|++.||+             |..+  .+++.+|+.       ++.+
T Consensus        87 ~~~KV~II~~ae~m~~~-------------AaNaLLK~LEE-------------Pp~~--t~fiLit~~-------~~~l  131 (261)
T PRK05818         87 NGKKIYIIYGIEKLNKQ-------------SANSLLKLIEE-------------PPKN--TYGIFTTRN-------ENNI  131 (261)
T ss_pred             CCCEEEEeccHhhhCHH-------------HHHHHHHhhcC-------------CCCC--eEEEEEECC-------hHhC
Confidence            24579999999999977             79999999996             2333  444444443       5789


Q ss_pred             HHHHHhhcccccccccc
Q psy5910         184 ENFIINRINQETNFLEK  200 (225)
Q Consensus       184 ~~al~~Rf~~~i~~~~~  200 (225)
                      .+.+++|... +.|+.+
T Consensus       132 LpTI~SRCq~-~~~~~~  147 (261)
T PRK05818        132 LNTILSRCVQ-YVVLSK  147 (261)
T ss_pred             chHhhhheee-eecCCh
Confidence            9999999633 555555

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=98.51  E-value=2.1e-07  Score=75.34  Aligned_cols=142  Identities=18%  Similarity=0.245  Sum_probs=64.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCe---EEeccCcccccCccCCcHHHHHHHHHHhc----ch---hhhhhCCCEE
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPI---IVVDATSFTEAGYVGDDVESIIQKLLHEC----DY---DVELAEQSII  109 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----~~---~~~~~~~~vl  109 (225)
                      ..++||+||+|||||++++..-+.+...-   ..++++..        +....+..+.+..    .+   .....+..|+
T Consensus        33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~--------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~  104 (272)
T PF12775_consen   33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ--------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVL  104 (272)
T ss_dssp             TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT--------HHHHHHHHCCCTTECECTTEEEEEESSSEEEE
T ss_pred             CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC--------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEE
Confidence            45899999999999999988776554332   22333221        1122233322211    01   0112345799


Q ss_pred             EEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh
Q psy5910         110 YIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN  189 (225)
Q Consensus       110 ~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~  189 (225)
                      |||+++--.++.-       ......+.|.++++..+.-......+. .-.+  +.++++.+.   .+|. ..+++-+.|
T Consensus       105 fiDDlN~p~~d~y-------gtq~~iElLRQ~i~~~g~yd~~~~~~~-~i~~--i~~vaa~~p---~~Gr-~~is~R~~r  170 (272)
T PF12775_consen  105 FIDDLNMPQPDKY-------GTQPPIELLRQLIDYGGFYDRKKLEWK-SIED--IQFVAAMNP---TGGR-NPISPRFLR  170 (272)
T ss_dssp             EEETTT-S---TT-------S--HHHHHHHHHHHCSEEECTTTTEEE-EECS--EEEEEEESS---TTT---SHHHHHHT
T ss_pred             EecccCCCCCCCC-------CCcCHHHHHHHHHHhcCcccCCCcEEE-EEee--eEEEEecCC---CCCC-CCCChHHhh
Confidence            9999987665531       112244556666775332111100000 0111  344444443   1121 247787777


Q ss_pred             hcccccccccccccc
Q psy5910         190 RINQETNFLEKLNNN  204 (225)
Q Consensus       190 Rf~~~i~~~~~~~~~  204 (225)
                      .|. .+.++.|+.+.
T Consensus       171 ~f~-i~~~~~p~~~s  184 (272)
T PF12775_consen  171 HFN-ILNIPYPSDES  184 (272)
T ss_dssp             TEE-EEE----TCCH
T ss_pred             heE-EEEecCCChHH
Confidence            663 26666676654

>KOG3347|consensus

Probab=98.50  E-value=6e-07  Score=64.79  Aligned_cols=34  Identities=32%  Similarity=0.576  Sum_probs=29.7

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      ..+++|+.|-|||||||+|..||..++.+++.+.
T Consensus         6 ~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is   39 (176)
T KOG3347|consen    6 ERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS   39 (176)
T ss_pred             cCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence            3469999999999999999999999988876654

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.50  E-value=7.3e-07  Score=85.12  Aligned_cols=144  Identities=26%  Similarity=0.298  Sum_probs=104.7

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc-CccC----CcHHHHHHHHHHhcchhhhhhCCCEEEEcc
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA-GYVG----DDVESIIQKLLHECDYDVELAEQSIIYIDE  113 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-~~~g----~~~~~~~~~~~~~~~~~~~~~~~~vl~iDE  113 (225)
                      ..-++|+.||+-+|||++...+|+..|..|++++-....+. .|.|    .+-+.   --|++.....+...+--|++||
T Consensus       887 ~~fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~---lsFkEGvLVeAlR~GyWIVLDE  963 (4600)
T COG5271         887 SNFPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGS---LSFKEGVLVEALRRGYWIVLDE  963 (4600)
T ss_pred             cCCcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCc---eeeehhHHHHHHhcCcEEEeec
Confidence            34589999999999999999999999999999998765431 1222    21110   0011110011234677899999


Q ss_pred             hhhhcccccccCCCCCChHHHHHHHHHHHh-cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910         114 IDKISKKTDVVSGKDVSGEGVQQSLLKLIE-GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN  192 (225)
Q Consensus       114 id~l~~~~~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~  192 (225)
                      .+-++..             +..+|-++|| ++..-+|+......||.+  +++.+|-|.+-+.+|. ..+..|++.||-
T Consensus       964 LNLApTD-------------VLEaLNRLLDDNRelfIPETqevV~PHp~--F~lFATQNppg~YgGR-K~LSrAFRNRFl 1027 (4600)
T COG5271         964 LNLAPTD-------------VLEALNRLLDDNRELFIPETQEVVVPHPN--FRLFATQNPPGGYGGR-KGLSRAFRNRFL 1027 (4600)
T ss_pred             cccCcHH-------------HHHHHHHhhccccceecCCcceeeccCCC--eeEEeecCCCccccch-HHHHHHHHhhhH
Confidence            9988866             8999999996 566677888888889998  9999999998888875 489999999983


Q ss_pred             cccccccccc
Q psy5910         193 QETNFLEKLN  202 (225)
Q Consensus       193 ~~i~~~~~~~  202 (225)
                      . +.|..-.+
T Consensus      1028 E-~hFddipe 1036 (4600)
T COG5271        1028 E-MHFDDIPE 1036 (4600)
T ss_pred             h-hhcccCcH
Confidence            3 44544333

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=98.50  E-value=2.7e-07  Score=80.68  Aligned_cols=61  Identities=26%  Similarity=0.411  Sum_probs=43.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-CCCeEEecc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-NVPIIVVDA   73 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~~   73 (225)
                      +.++|++++++++...+.....+.        ....+-++|.||||+|||+||++|++.+ ..+++.+.+
T Consensus        76 ~d~yGlee~ieriv~~l~~Aa~gl--------~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg  137 (644)
T PRK15455         76 EEFYGMEEAIEQIVSYFRHAAQGL--------EEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA  137 (644)
T ss_pred             hcccCcHHHHHHHHHHHHHHHHhc--------CCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence            457999999999987663333332        1233455599999999999999999987 345665544

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.48  E-value=4e-06  Score=62.11  Aligned_cols=37  Identities=30%  Similarity=0.671  Sum_probs=29.9

Q ss_pred             eEeecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.++++++...++. ++++||||||||++.+.+|...
T Consensus        16 a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          16 AKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             CeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhcc
Confidence            345666777777765 5599999999999999999876

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=98.48  E-value=5.9e-07  Score=73.02  Aligned_cols=140  Identities=19%  Similarity=0.213  Sum_probs=79.8

Q ss_pred             chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeE-------------EeccCc
Q psy5910           9 GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPII-------------VVDATS   75 (225)
Q Consensus         9 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~-------------~~~~~~   75 (225)
                      +|..+++.+..++...             .-...+||+||  +||+++|+.+|+.+.+.-.             .+..+.
T Consensus         6 ~q~~~~~~L~~~~~~~-------------rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~   70 (290)
T PRK07276          6 KQPKVFQRFQTILEQD-------------RLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGE   70 (290)
T ss_pred             HHHHHHHHHHHHHHcC-------------CcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCC
Confidence            4677777777766211             11125779996  6899999999988743210             000011


Q ss_pred             ccccCcc---CCcH-HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccc
Q psy5910          76 FTEAGYV---GDDV-ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS  151 (225)
Q Consensus        76 ~~~~~~~---g~~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~  151 (225)
                      .-+-.+.   |..+ ..-++.+.+............|++||++|+|...             ..++|++.||+       
T Consensus        71 HPD~~~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLEE-------  130 (290)
T PRK07276         71 FSDVTVIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIEE-------  130 (290)
T ss_pred             CCCeeeecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhcC-------
Confidence            1000011   1110 1223333333221112335579999999999977             79999999997       


Q ss_pred             cccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccc
Q psy5910         152 LAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLE  199 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~  199 (225)
                            |..+  .++|.+++.       ++.+.+.+++|. ..+.|+.
T Consensus       131 ------Pp~~--t~~iL~t~~-------~~~lLpTI~SRc-q~i~f~~  162 (290)
T PRK07276        131 ------PQSE--IYIFLLTND-------ENKVLPTIKSRT-QIFHFPK  162 (290)
T ss_pred             ------CCCC--eEEEEEECC-------hhhCchHHHHcc-eeeeCCC
Confidence                  2333  344443333       568999999996 3366655

>PHA02624 large T antigen; Provisional

Probab=98.47  E-value=4e-07  Score=79.89  Aligned_cols=130  Identities=16%  Similarity=0.170  Sum_probs=73.7

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK  119 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~  119 (225)
                      ++.++|+||||||||+++.+|++.++.....+++..-...-|.|                  -....-+++||++-.-.-
T Consensus       431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~------------------pl~D~~~~l~dD~t~~~~  492 (647)
T PHA02624        431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELG------------------CAIDQFMVVFEDVKGQPA  492 (647)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhh------------------hhhhceEEEeeecccccc
Confidence            34566999999999999999999996666667654422111111                  113456888998864433


Q ss_pred             cccccCCCCCChHHH--HHHHHHHHhcC-CcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccc
Q psy5910         120 KTDVVSGKDVSGEGV--QQSLLKLIEGV-NLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETN  196 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~--~~~Ll~~l~~~-~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~  196 (225)
                      ......    .+..+  ..-|...|||. ..++...      |.++    +-..-.+-|.|+|.-.||..+.-||...+.
T Consensus       493 ~~~~Lp----~G~~~dNl~~lRn~LDG~V~v~ld~K------H~n~----~q~~~PPlliT~Ney~iP~T~~~Rf~~~~~  558 (647)
T PHA02624        493 DNKDLP----SGQGMNNLDNLRDYLDGSVPVNLEKK------HLNK----RSQIFPPGIVTMNEYLIPQTVKARFAKVLD  558 (647)
T ss_pred             ccccCC----cccccchhhHHHhhcCCCCccccchh------ccCc----hhccCCCeEEeecCcccchhHHHHHHHhcc
Confidence            111000    00112  25677888875 3333211      1110    011112223333334799999999999888


Q ss_pred             ccccc
Q psy5910         197 FLEKL  201 (225)
Q Consensus       197 ~~~~~  201 (225)
                      |....
T Consensus       559 F~~k~  563 (647)
T PHA02624        559 FKPKP  563 (647)
T ss_pred             ccccH
Confidence            87654

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=98.46  E-value=4.2e-07  Score=79.67  Aligned_cols=31  Identities=45%  Similarity=0.660  Sum_probs=27.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      -+||+|||||||||+++.+|++++..+....
T Consensus        47 iLlLtGP~G~GKtttv~~La~elg~~v~Ew~   77 (519)
T PF03215_consen   47 ILLLTGPSGCGKTTTVKVLAKELGFEVQEWI   77 (519)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence            3459999999999999999999998877753

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.46  E-value=5.3e-07  Score=78.36  Aligned_cols=125  Identities=16%  Similarity=0.255  Sum_probs=82.8

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCC
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ  106 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  106 (225)
                      ...+++.++....+.++ ++|+||||||++++++...+..+.....+..+    |.|.+.-.........    ++...-
T Consensus        22 ~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~----~~g~dl~~l~~~~~r~----~rg~~I   93 (539)
T COG1123          22 VPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI----LDGRDLLGLSEREMRK----LRGKRI   93 (539)
T ss_pred             eeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEE----ECCcchhcCCHHHHHH----hccccE
Confidence            46789999999999999 99999999999999999988665433333332    4443322221221111    123455


Q ss_pred             CEEEEcchhhhcccccccC--------CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910         107 SIIYIDEIDKISKKTDVVS--------GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~--------~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                      +++|-|.+.++.|......        +...+.++......++|+......+... ..||++-
T Consensus        94 a~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~-~~yPheL  155 (539)
T COG1123          94 AMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR-DRYPHQL  155 (539)
T ss_pred             EEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh-ccCCccc
Confidence            7888888888877543321        3334467788888999998666555544 5677764

>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]

Probab=98.45  E-value=4.4e-07  Score=86.55  Aligned_cols=138  Identities=22%  Similarity=0.277  Sum_probs=92.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc-CccCCcH--HHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA-GYVGDDV--ESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-~~~g~~~--~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      +++||-|.||+|||++..++|+..|..+++++.++-.+- ...|.+.  +..-.-.|..++..-++..++-+++||++-+
T Consensus      1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271        1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred             CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence            589999999999999999999999999999998654320 1222211  0000112223333445678899999999987


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCC-cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVN-LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE  194 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~-~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~  194 (225)
                      ..+             +...|-..||-++ .-+|+......-|.+  +.+.+|-|.-.-.+| -..+|..++.||...
T Consensus      1624 SQS-------------VlEGLNacLDhR~eayIPEld~~f~~Hpn--frVFAaqNPq~qggG-RKgLPkSF~nRFsvV 1685 (4600)
T COG5271        1624 SQS-------------VLEGLNACLDHRREAYIPELDKTFDVHPN--FRVFAAQNPQDQGGG-RKGLPKSFLNRFSVV 1685 (4600)
T ss_pred             HHH-------------HHHHHHHHHhhccccccccccceeeccCC--eeeeeecCchhcCCC-cccCCHHHhhhhheE
Confidence            755             7888888888443 334444333333444  888888887433333 358999999999765

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.45  E-value=2.1e-07  Score=65.91  Aligned_cols=31  Identities=39%  Similarity=0.793  Sum_probs=27.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      |++.||||+||||+|+.+++.++.+++.++.
T Consensus         2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~   32 (121)
T PF13207_consen    2 IIISGPPGSGKSTLAKELAERLGFPVISMDD   32 (121)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence            5799999999999999999999887766554

...

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.44  E-value=3.2e-06  Score=61.93  Aligned_cols=40  Identities=30%  Similarity=0.538  Sum_probs=32.2

Q ss_pred             ccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          25 YKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +......++.++..+.+.++ +.||+|+|||||++.++...
T Consensus        10 ~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (144)
T cd03221          10 YGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGEL   50 (144)
T ss_pred             ECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            33334667778888887776 99999999999999999876

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.40  E-value=3.3e-06  Score=62.48  Aligned_cols=32  Identities=44%  Similarity=0.619  Sum_probs=25.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      ++++||||+|||+++..++...   +.++++++..
T Consensus         2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e   36 (165)
T cd01120           2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE   36 (165)
T ss_pred             eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence            5799999999999999998877   4556666553

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=98.39  E-value=2.7e-06  Score=69.65  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=73.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE-EeccC----cccccCcc--CCcH-HHHHHHHHHhcchhh-hhhCCCEEEEc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII-VVDAT----SFTEAGYV--GDDV-ESIIQKLLHECDYDV-ELAEQSIIYID  112 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~-~~~~~----~~~~~~~~--g~~~-~~~~~~~~~~~~~~~-~~~~~~vl~iD  112 (225)
                      .+||+|+.|.||+++|+.+++.+.+.-. .++..    ++.  -+.  |... ..-++.+.+...... .....-|++||
T Consensus        20 aYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~--~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~   97 (299)
T PRK07132         20 SFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANII--LFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILIIK   97 (299)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceE--EeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEEe
Confidence            4569999999999999999998733100 00000    000  011  2111 122333333332211 22467899999


Q ss_pred             chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910         113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN  192 (225)
Q Consensus       113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~  192 (225)
                      +++++...             .+++|++.||+-             ...  .++|.+++.       ++.+-+.+++|. 
T Consensus        98 ~~e~m~~~-------------a~NaLLK~LEEP-------------p~~--t~~il~~~~-------~~kll~TI~SRc-  141 (299)
T PRK07132         98 NIEKTSNS-------------LLNALLKTIEEP-------------PKD--TYFLLTTKN-------INKVLPTIVSRC-  141 (299)
T ss_pred             cccccCHH-------------HHHHHHHHhhCC-------------CCC--eEEEEEeCC-------hHhChHHHHhCe-
Confidence            99999866             789999999962             222  333333323       467888999985 


Q ss_pred             cccccccccccc
Q psy5910         193 QETNFLEKLNNN  204 (225)
Q Consensus       193 ~~i~~~~~~~~~  204 (225)
                      ..+.|..++.+.
T Consensus       142 ~~~~f~~l~~~~  153 (299)
T PRK07132        142 QVFNVKEPDQQK  153 (299)
T ss_pred             EEEECCCCCHHH
Confidence            347777776543

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.39  E-value=1.1e-06  Score=65.97  Aligned_cols=23  Identities=35%  Similarity=0.755  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +++|+|+||+||||+++.+.+.+
T Consensus         1 ~i~iTG~pG~GKTTll~k~i~~l   23 (168)
T PF03266_consen    1 HIFITGPPGVGKTTLLKKVIEEL   23 (168)
T ss_dssp             EEEEES-TTSSHHHHHHHHHHHH
T ss_pred             CEEEECcCCCCHHHHHHHHHHHh
Confidence            57899999999999999998888

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.38  E-value=5.2e-07  Score=74.95  Aligned_cols=46  Identities=24%  Similarity=0.547  Sum_probs=40.1

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|.....+++.++....+.++ |.|||||||||+.|.||..-
T Consensus         9 ~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe   55 (352)
T COG3842           9 RNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFE   55 (352)
T ss_pred             EeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34667777888899999999998888 99999999999999999755

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.38  E-value=1.5e-06  Score=73.40  Aligned_cols=128  Identities=16%  Similarity=0.261  Sum_probs=72.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI  114 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  114 (225)
                      ..+++||||+|+|||.|++++++..     +..+++++...+.. .++-.-..... .-|++      ...--+++||++
T Consensus       113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-~~v~a~~~~~~-~~Fk~------~y~~dlllIDDi  184 (408)
T COG0593         113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-DFVKALRDNEM-EKFKE------KYSLDLLLIDDI  184 (408)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH-HHHHHHHhhhH-HHHHH------hhccCeeeechH
Confidence            3578899999999999999999887     23355555544321 01000000000 11111      123459999999


Q ss_pred             hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc-eeeccCccccHHHHHHhhccc
Q psy5910         115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI-LFIAGGAFSGIENFIINRINQ  193 (225)
Q Consensus       115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~-~~i~~~~~~~l~~al~~Rf~~  193 (225)
                      +.+..+.           +.+..|...+.....             .+ -.++.|+.. +.    ....+.+-+++||.-
T Consensus       185 q~l~gk~-----------~~qeefFh~FN~l~~-------------~~-kqIvltsdr~P~----~l~~~~~rL~SR~~~  235 (408)
T COG0593         185 QFLAGKE-----------RTQEEFFHTFNALLE-------------NG-KQIVLTSDRPPK----ELNGLEDRLRSRLEW  235 (408)
T ss_pred             hHhcCCh-----------hHHHHHHHHHHHHHh-------------cC-CEEEEEcCCCch----hhccccHHHHHHHhc
Confidence            9998662           256666666653210             11 133333333 11    124566899999976


Q ss_pred             c--cccccccccc
Q psy5910         194 E--TNFLEKLNNN  204 (225)
Q Consensus       194 ~--i~~~~~~~~~  204 (225)
                      -  +...+|+.+.
T Consensus       236 Gl~~~I~~Pd~e~  248 (408)
T COG0593         236 GLVVEIEPPDDET  248 (408)
T ss_pred             eeEEeeCCCCHHH
Confidence            5  6777777655

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=98.37  E-value=5.3e-07  Score=75.73  Aligned_cols=29  Identities=24%  Similarity=0.485  Sum_probs=25.1

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      .+++++.|+|++|+|||+|.-...+.+..
T Consensus        60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~   88 (362)
T PF03969_consen   60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPI   88 (362)
T ss_pred             CCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence            34579999999999999999999988754

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>KOG0058|consensus

Probab=98.37  E-value=1.2e-06  Score=77.79  Aligned_cols=46  Identities=26%  Similarity=0.468  Sum_probs=37.2

Q ss_pred             eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+.+.|..   ...++++++..+++.+. |+||+|.||||+|..+-+.+
T Consensus       469 ~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY  518 (716)
T KOG0058|consen  469 EDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFY  518 (716)
T ss_pred             EEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            345555543   34678999999998777 99999999999999999887

>PRK07261 topology modulation protein; Provisional

Probab=98.35  E-value=2e-06  Score=64.98  Aligned_cols=43  Identities=26%  Similarity=0.585  Sum_probs=32.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .++++|+||+||||+|+.+++.++.+.+..+.-... .+|...+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~-~~~~~~~   44 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ-PNWQERD   44 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec-cccccCC
Confidence            478999999999999999999999887777654332 2344443

>PHA00729 NTP-binding motif containing protein

Probab=98.35  E-value=9.9e-07  Score=68.92  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=22.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +++|+|+||||||++|.+|++.++
T Consensus        19 nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         19 SAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999999875

>PRK08118 topology modulation protein; Reviewed

Probab=98.35  E-value=4.6e-07  Score=68.13  Aligned_cols=33  Identities=33%  Similarity=0.710  Sum_probs=29.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~   74 (225)
                      .|+++||||+||||+|+.|++.++.+++.++.-
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l   35 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL   35 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence            688999999999999999999999998877753

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.33  E-value=4.3e-06  Score=67.50  Aligned_cols=43  Identities=19%  Similarity=0.478  Sum_probs=35.5

Q ss_pred             EecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+.......++++..+.+.++ |.||||+||||+.|.||...
T Consensus         9 ~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe   52 (345)
T COG1118           9 KKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLE   52 (345)
T ss_pred             hhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcC
Confidence            34455556666788888888888 99999999999999999876

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.29  E-value=1.9e-06  Score=68.57  Aligned_cols=47  Identities=26%  Similarity=0.454  Sum_probs=41.8

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|+....+++.++..+.+.++ +.||.|||||||.|++++.+.
T Consensus         6 ~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~   53 (258)
T COG1120           6 ENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK   53 (258)
T ss_pred             EEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            45677788888899999999998888 999999999999999999774

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.29  E-value=1.1e-05  Score=60.38  Aligned_cols=44  Identities=18%  Similarity=0.440  Sum_probs=35.3

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.......+.++..+++.++ |.||+|+|||||.+.++...
T Consensus         6 l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216           6 ITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             EEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444445777888888888777 99999999999999999876

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.28  E-value=4e-06  Score=72.99  Aligned_cols=144  Identities=19%  Similarity=0.301  Sum_probs=85.0

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELA  104 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  104 (225)
                      .+++++.++....+.++ |+|+|||||||+||.|+......  .+.+++.++ ...  +..    ...+         ..
T Consensus       304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~-~~~--~~~----~~~~---------r~  367 (539)
T COG1123         304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL-DLT--GGE----LRRL---------RR  367 (539)
T ss_pred             eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc-ccc--cch----hhhh---------hh
Confidence            57789999999999999 99999999999999999876321  233333331 110  111    1111         12


Q ss_pred             CCCEEEEcchhhhcccccccC--------CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc-----e---eEEe
Q psy5910         105 EQSIIYIDEIDKISKKTDVVS--------GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ-----V---FNID  168 (225)
Q Consensus       105 ~~~vl~iDEid~l~~~~~~~~--------~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~-----~---~~i~  168 (225)
                      .--++|.|...++.|..+...        +......+....+..+|+.....  .....++|++-.+     +   ..++
T Consensus       368 ~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~--~~~l~ryP~elSGGQrQRvaIARALa  445 (539)
T COG1123         368 RIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLP--PEFLDRYPHELSGGQRQRVAIARALA  445 (539)
T ss_pred             heEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCC--HHHHhcCchhcCcchhHHHHHHHHHh
Confidence            446999999999988776432        12221233333455556653333  3334455554311     1   2345


Q ss_pred             cCcceeeccCccccHHHHHHh
Q psy5910         169 TTNILFIAGGAFSGIENFIIN  189 (225)
Q Consensus       169 ttn~~~i~~~~~~~l~~al~~  189 (225)
                      +.-.+.||+-....||+.+..
T Consensus       446 ~~P~lli~DEp~SaLDvsvqa  466 (539)
T COG1123         446 LEPKLLILDEPVSALDVSVQA  466 (539)
T ss_pred             cCCCEEEecCCccccCHHHHH
Confidence            555667777666677765543

>KOG2680|consensus

Probab=98.27  E-value=1.3e-06  Score=70.22  Aligned_cols=38  Identities=24%  Similarity=0.487  Sum_probs=31.3

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcc
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSF   76 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~   76 (225)
                      ..+.+|+.|+||||||.+|-.+++.+|  .||..+.++.+
T Consensus        65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI  104 (454)
T KOG2680|consen   65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEI  104 (454)
T ss_pred             cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeeccee
Confidence            345788999999999999999999996  47777777655

>TIGR02688 conserved hypothetical protein TIGR02688

Probab=98.26  E-value=4.3e-06  Score=70.84  Aligned_cols=86  Identities=14%  Similarity=0.222  Sum_probs=51.8

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCC-CeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINV-PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      ...++++.||+|||||.++.+++...-+ .-...             +....+..+.....+.  -...-+|+|||+..+
T Consensus       208 ~~~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~-------------T~a~Lf~~L~~~~lg~--v~~~DlLI~DEvgyl  272 (449)
T TIGR02688       208 PNYNLIELGPKGTGKSYIYNNLSPYVILISGGTI-------------TVAKLFYNISTRQIGL--VGRWDVVAFDEVATL  272 (449)
T ss_pred             cCCcEEEECCCCCCHHHHHHHHhHHHHHHcCCcC-------------cHHHHHHHHHHHHHhh--hccCCEEEEEcCCCC
Confidence            3459999999999999999998866200 00111             1122222222211111  135679999999997


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS  148 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~  148 (225)
                      .-..         .++..+.|...|+....+
T Consensus       273 p~~~---------~~~~v~imK~yMesg~fs  294 (449)
T TIGR02688       273 KFAK---------PKELIGILKNYMESGSFT  294 (449)
T ss_pred             cCCc---------hHHHHHHHHHHHHhCcee
Confidence            6442         123677888888865544

Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.23  E-value=1.4e-06  Score=65.50  Aligned_cols=33  Identities=36%  Similarity=0.519  Sum_probs=28.5

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      +..++|+|+||||||++|+.+|+.++.+++..+
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d   36 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD   36 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            347889999999999999999999988777543

>PF05729 NACHT: NACHT domain

Probab=98.23  E-value=1.8e-05  Score=58.73  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -++++|+||+|||++++.++..+
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~   24 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQL   24 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHH
Confidence            46799999999999999999777

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.22  E-value=1.9e-06  Score=71.22  Aligned_cols=45  Identities=29%  Similarity=0.649  Sum_probs=36.1

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|+....++++++....+..+ |.|||||||||+.|.||...
T Consensus         8 ~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe   53 (338)
T COG3839           8 NVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLE   53 (338)
T ss_pred             eeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445555444778888989888777 99999999999999999766

>KOG1514|consensus

Probab=98.19  E-value=6.2e-06  Score=73.02  Aligned_cols=130  Identities=15%  Similarity=0.274  Sum_probs=79.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCccccc---------CccCCcHH--HHHHHHHHhcchh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATSFTEA---------GYVGDDVE--SIIQKLLHECDYD  100 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~~~---------~~~g~~~~--~~~~~~~~~~~~~  100 (225)
                      .+.+.|-||||||...+.+.+.+          ...++.+|+-.+.+.         .+.|....  ..+..+.......
T Consensus       424 ~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~  503 (767)
T KOG1514|consen  424 CMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVP  503 (767)
T ss_pred             eEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccC
Confidence            45599999999999998888765          345788888665431         12333211  1122221111111


Q ss_pred             hhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc
Q psy5910         101 VELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF  180 (225)
Q Consensus       101 ~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~  180 (225)
                      -....++||+|||.|.|..+             -|..|..+++=-          ..+...  .++|+..|.       .
T Consensus       504 k~~~~~~VvLiDElD~Lvtr-------------~QdVlYn~fdWp----------t~~~sK--Lvvi~IaNT-------m  551 (767)
T KOG1514|consen  504 KPKRSTTVVLIDELDILVTR-------------SQDVLYNIFDWP----------TLKNSK--LVVIAIANT-------M  551 (767)
T ss_pred             CCCCCCEEEEeccHHHHhcc-------------cHHHHHHHhcCC----------cCCCCc--eEEEEeccc-------c
Confidence            12346799999999999977             377787887721          112222  666666666       3


Q ss_pred             ccHHHHHH-----hhcccc-cccccccccc
Q psy5910         181 SGIENFII-----NRINQE-TNFLEKLNNN  204 (225)
Q Consensus       181 ~~l~~al~-----~Rf~~~-i~~~~~~~~~  204 (225)
                       ++++-++     +|+... |.|.+.+.++
T Consensus       552 -dlPEr~l~nrvsSRlg~tRi~F~pYth~q  580 (767)
T KOG1514|consen  552 -DLPERLLMNRVSSRLGLTRICFQPYTHEQ  580 (767)
T ss_pred             -cCHHHHhccchhhhccceeeecCCCCHHH
Confidence             4555443     377666 8888888766

>KOG0056|consensus

Probab=98.19  E-value=3.7e-05  Score=66.00  Aligned_cols=58  Identities=24%  Similarity=0.438  Sum_probs=42.7

Q ss_pred             eeeEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcc
Q psy5910          19 VGVYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSF   76 (225)
Q Consensus        19 ~~l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~   76 (225)
                      ..+.+.|. +.+.++++++..+++..+ |+||||.||||+.|.+-+..+.  ..+.+++.++
T Consensus       541 snvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdI  602 (790)
T KOG0056|consen  541 SNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDI  602 (790)
T ss_pred             EEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchH
Confidence            34455554 456778899999888777 9999999999999999987732  3455555433

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=98.17  E-value=1.8e-05  Score=61.12  Aligned_cols=32  Identities=34%  Similarity=0.559  Sum_probs=23.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      -.++.||||||||++++.+...+   +..++.+.+
T Consensus        20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap   54 (196)
T PF13604_consen   20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP   54 (196)
T ss_dssp             EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC
Confidence            45588999999999999887766   445555544

>PRK13947 shikimate kinase; Provisional

Probab=98.17  E-value=2.2e-06  Score=64.50  Aligned_cols=32  Identities=38%  Similarity=0.517  Sum_probs=28.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      ++++.|+||||||++|+.+|+.++.+++..+.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~   34 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK   34 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch
Confidence            68899999999999999999999998866543

>PRK03839 putative kinase; Provisional

Probab=98.17  E-value=2e-06  Score=65.40  Aligned_cols=31  Identities=29%  Similarity=0.411  Sum_probs=27.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .|+|.|+||+||||+++.+|+.++.+++..+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d   32 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT   32 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence            4789999999999999999999998887654

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.17  E-value=1.2e-05  Score=73.19  Aligned_cols=46  Identities=22%  Similarity=0.340  Sum_probs=36.5

Q ss_pred             eeeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+.+.|..  +..+.+.++..+++..+ ++|++|||||||+|.+...+
T Consensus       475 ~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly  523 (709)
T COG2274         475 ENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLY  523 (709)
T ss_pred             EEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344555544  35778889999887655 99999999999999999877

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.17  E-value=1.8e-05  Score=59.99  Aligned_cols=41  Identities=37%  Similarity=0.601  Sum_probs=29.5

Q ss_pred             ecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          23 NHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..++......+ .+..+.+.++ |.||+|+|||||.+.++...
T Consensus         8 ~~~~~~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   49 (177)
T cd03222           8 KRYGVFFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQL   49 (177)
T ss_pred             EEECCEEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            33444444444 2456666666 99999999999999999876

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK00625 shikimate kinase; Provisional

Probab=98.16  E-value=2.3e-06  Score=64.64  Aligned_cols=32  Identities=38%  Similarity=0.558  Sum_probs=28.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      +|+|+|.||+||||+++.+|+.++.+++..+.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~   33 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDD   33 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhH
Confidence            58899999999999999999999998877654

>PHA02774 E1; Provisional

Probab=98.15  E-value=1.7e-05  Score=69.63  Aligned_cols=77  Identities=23%  Similarity=0.399  Sum_probs=48.4

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCe-EEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPI-IVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKIS  118 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~  118 (225)
                      +..++|+||||||||++|.+|++.++... ..+|...   .-|        +..+          ..--+++|||+-.-.
T Consensus       434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---~Fw--------Lqpl----------~d~ki~vlDD~t~~~  492 (613)
T PHA02774        434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---HFW--------LQPL----------ADAKIALLDDATHPC  492 (613)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---ccc--------cchh----------ccCCEEEEecCcchH
Confidence            35788999999999999999999985443 3344321   111        1111          233599999982221


Q ss_pred             ccccccCCCCCChHHHHHHHHHHHhcCCcCc
Q psy5910         119 KKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI  149 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~  149 (225)
                      -.            -+...|..+|++...++
T Consensus       493 w~------------y~d~~Lrn~LdG~~v~l  511 (613)
T PHA02774        493 WD------------YIDTYLRNALDGNPVSI  511 (613)
T ss_pred             HH------------HHHHHHHHHcCCCccee
Confidence            11            14557888999865443

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.15  E-value=7.2e-06  Score=68.62  Aligned_cols=134  Identities=16%  Similarity=0.235  Sum_probs=88.0

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcch
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDY   99 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   99 (225)
                      +.........++++++....+..+ ++|+||+|||..|.++.+.+..+-...-.+.+   .|.|.+.-..........  
T Consensus        16 f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i---~f~G~dll~~se~~lr~i--   90 (534)
T COG4172          16 FHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSI---LFDGEDLLAASERQLRGV--   90 (534)
T ss_pred             EecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCcccee---EEcChhhhcCCHHHHhhh--
Confidence            333334667788999999999888 99999999999999999998664332222222   266665433333322222  


Q ss_pred             hhhhhCCCEEEEcchhhhccccc------ccC--CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910         100 DVELAEQSIIYIDEIDKISKKTD------VVS--GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~~~------~~~--~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                        +-.+-++||-+..-++.|-..      ...  |...+...+....+++|+.....-+......||++-
T Consensus        91 --RG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL  158 (534)
T COG4172          91 --RGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL  158 (534)
T ss_pred             --cccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc
Confidence              222445666655555544322      221  566677778889999999887777777777888875

>PRK10536 hypothetical protein; Provisional

Probab=98.14  E-value=3.4e-05  Score=61.45  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .-++++||+|||||+||.+++..
T Consensus        75 ~lV~i~G~aGTGKT~La~a~a~~   97 (262)
T PRK10536         75 QLIFATGEAGCGKTWISAAKAAE   97 (262)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            36779999999999999998874

>KOG1970|consensus

Probab=98.13  E-value=1.6e-05  Score=68.72  Aligned_cols=32  Identities=41%  Similarity=0.707  Sum_probs=28.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      +-+||+||+||||||..+.+++++|..+....
T Consensus       111 ~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~  142 (634)
T KOG1970|consen  111 RILLLTGPSGCGKSTTVKVLSKELGYQLIEWS  142 (634)
T ss_pred             eEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence            34559999999999999999999998887765

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.13  E-value=3.2e-06  Score=62.31  Aligned_cols=31  Identities=42%  Similarity=0.723  Sum_probs=27.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      +++++|+||||||++|+.+++.++.+++..+
T Consensus         1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d   31 (154)
T cd00464           1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD   31 (154)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence            4789999999999999999999988876554

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>KOG0055|consensus

Probab=98.13  E-value=3.8e-05  Score=72.35  Aligned_cols=59  Identities=20%  Similarity=0.406  Sum_probs=42.7

Q ss_pred             eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCccc
Q psy5910          19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFT   77 (225)
Q Consensus        19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~   77 (225)
                      +.+.+.|..   ...+++.++..+.+.-+ |+|||||||||+...+-+.++.  -.+.+++.++.
T Consensus       991 ~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik 1055 (1228)
T KOG0055|consen  991 RNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIK 1055 (1228)
T ss_pred             eeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccc
Confidence            445555543   24467888888888777 9999999999999999998843  35566665543

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.12  E-value=7.4e-06  Score=65.42  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=23.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      ..++|+||+||||||+++.+++....
T Consensus        17 qr~~I~G~~G~GKTTLlr~I~n~l~~   42 (249)
T cd01128          17 QRGLIVAPPKAGKTTLLQSIANAITK   42 (249)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccc
Confidence            46789999999999999999988754

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK06217 hypothetical protein; Validated

Probab=98.12  E-value=3.2e-06  Score=64.46  Aligned_cols=32  Identities=28%  Similarity=0.531  Sum_probs=28.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      .|+|.|+||+||||+|+.|++.++.+++..+.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~   34 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLDIPHLDTDD   34 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEcCc
Confidence            58899999999999999999999988776653

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.11  E-value=2.7e-06  Score=63.45  Aligned_cols=33  Identities=42%  Similarity=0.692  Sum_probs=30.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      .+++|+|++|+||||+.+.+|+.++.+|+-.+.
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~   35 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQ   35 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchH
Confidence            478999999999999999999999999987655

>PRK13949 shikimate kinase; Provisional

Probab=98.11  E-value=3.2e-06  Score=63.70  Aligned_cols=31  Identities=42%  Similarity=0.628  Sum_probs=28.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      +++|+|+||+||||+++.+|+.++.+++..+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D   33 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD   33 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence            6889999999999999999999998877665

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.10  E-value=3.4e-05  Score=64.94  Aligned_cols=35  Identities=31%  Similarity=0.449  Sum_probs=25.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh----C-CCeEEeccCc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII----N-VPIIVVDATS   75 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~----~-~~~~~~~~~~   75 (225)
                      ..++|+||+|+||||++..++..+    + ..+..++...
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~  177 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS  177 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence            355599999999999999998764    2 2445555444

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.10  E-value=2.2e-05  Score=65.78  Aligned_cols=119  Identities=18%  Similarity=0.303  Sum_probs=75.0

Q ss_pred             cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC-eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhh
Q psy5910          26 KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP-IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVEL  103 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  103 (225)
                      ...++++++++....+..| ++|+|||||||+.+++.+.+... -+.+.+.++..  +   +     +....-     -+
T Consensus       298 ~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~--~---~-----~~~mrp-----lR  362 (534)
T COG4172         298 DHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDG--L---S-----RKEMRP-----LR  362 (534)
T ss_pred             hheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccc--c---C-----hhhhhh-----hh
Confidence            3467788999999998888 99999999999999999987443 33344433321  1   1     111111     12


Q ss_pred             hCCCEEEEcchhhhcccccccC--------C-CCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910         104 AEQSIIYIDEIDKISKKTDVVS--------G-KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus       104 ~~~~vl~iDEid~l~~~~~~~~--------~-~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                      .+-.++|-|...++.|+.+...        + ...+..+-.+.....|.+..  .+.....+||++-
T Consensus       363 ~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVG--LDp~~r~RYPhEF  427 (534)
T COG4172         363 RRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVG--LDPATRNRYPHEF  427 (534)
T ss_pred             hhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcC--CChhHhhcCCccc
Confidence            2446999999999999876432        1 23333334455666666533  3344455666653

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.09  E-value=3.3e-05  Score=57.31  Aligned_cols=41  Identities=29%  Similarity=0.608  Sum_probs=32.3

Q ss_pred             ccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          25 YKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.....+.+.++..+++.++ |.||+|+||||++++++..+.
T Consensus         9 ~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~   50 (157)
T cd00267           9 YGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK   50 (157)
T ss_pred             eCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            33335667777877776666 999999999999999998763

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.09  E-value=3.5e-06  Score=61.80  Aligned_cols=28  Identities=29%  Similarity=0.544  Sum_probs=25.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      +-+.|||||||||+|+.||+.+|.+++.
T Consensus         3 ItIsG~pGsG~TTva~~lAe~~gl~~vs   30 (179)
T COG1102           3 ITISGLPGSGKTTVARELAEHLGLKLVS   30 (179)
T ss_pred             EEeccCCCCChhHHHHHHHHHhCCceee
Confidence            4588999999999999999999998764

>PRK14532 adenylate kinase; Provisional

Probab=98.08  E-value=3.9e-06  Score=64.21  Aligned_cols=29  Identities=28%  Similarity=0.445  Sum_probs=25.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      ++++.|||||||||+|+.+|+.++.+++.
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is   30 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQLS   30 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence            57899999999999999999998875543

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=98.08  E-value=1.8e-05  Score=58.26  Aligned_cols=34  Identities=29%  Similarity=0.602  Sum_probs=28.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      +++.|+||+||||+|+.++..+   +...+.++...+
T Consensus         2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~   38 (149)
T cd02027           2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV   38 (149)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence            5699999999999999999998   666677766544

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.06  E-value=3.5e-05  Score=60.39  Aligned_cols=41  Identities=24%  Similarity=0.455  Sum_probs=36.3

Q ss_pred             ccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          25 YKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ......++++++....+..+ |+|++|+|||||.|.|+..+.
T Consensus        37 ~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~   78 (249)
T COG1134          37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK   78 (249)
T ss_pred             cceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC
Confidence            34567789999999999999 999999999999999998873

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.06  E-value=2.6e-06  Score=64.64  Aligned_cols=59  Identities=20%  Similarity=0.321  Sum_probs=36.6

Q ss_pred             eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC---eEEeccCcc
Q psy5910           7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP---IIVVDATSF   76 (225)
Q Consensus         7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~---~~~~~~~~~   76 (225)
                      ++|.++.++++...+. ....          ...+.++++|++|+|||++++.+...+..+   ++..++...
T Consensus         2 fvgR~~e~~~l~~~l~-~~~~----------~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~   63 (185)
T PF13191_consen    2 FVGREEEIERLRDLLD-AAQS----------GSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS   63 (185)
T ss_dssp             -TT-HHHHHHHHHTTG-GTSS---------------EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred             CCCHHHHHHHHHHHHH-HHHc----------CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence            5789999999988773 2211          233578899999999999999888776333   555555443

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=98.06  E-value=3e-06  Score=61.68  Aligned_cols=32  Identities=38%  Similarity=0.713  Sum_probs=25.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      +++.|||||||||+|+.+++.++  ...++...+
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~~~--~~~i~~D~~   33 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKRLG--AVVISQDEI   33 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHST--EEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHCC--CEEEeHHHH
Confidence            57999999999999999999887  444554443

...

>PRK14531 adenylate kinase; Provisional

Probab=98.05  E-value=5.7e-06  Score=63.14  Aligned_cols=29  Identities=24%  Similarity=0.463  Sum_probs=25.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .+++.||||+||||+|+.+++.++.+.+.
T Consensus         4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is   32 (183)
T PRK14531          4 RLLFLGPPGAGKGTQAARLCAAHGLRHLS   32 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            68899999999999999999999876544

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.05  E-value=3.2e-05  Score=58.84  Aligned_cols=32  Identities=28%  Similarity=0.283  Sum_probs=25.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      ++++||||||||+++..++...   +.++.+++..
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            6799999999999998776544   6667776653

A related protein is found in archaea.

>PRK13948 shikimate kinase; Provisional

Probab=98.04  E-value=6.3e-06  Score=62.76  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=30.9

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .+..+++|+|.+||||||+++.+|+.++.+++..+
T Consensus         8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D   42 (182)
T PRK13948          8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD   42 (182)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence            45568999999999999999999999999988665

>PRK14974 cell division protein FtsY; Provisional

Probab=98.04  E-value=9.1e-05  Score=61.70  Aligned_cols=33  Identities=27%  Similarity=0.511  Sum_probs=25.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      -++|+||+|+||||++..+|..+   +..+..+++.
T Consensus       142 vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D  177 (336)
T PRK14974        142 VIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD  177 (336)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence            46699999999999988888766   4455555554

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=98.04  E-value=5.5e-06  Score=63.03  Aligned_cols=31  Identities=16%  Similarity=0.339  Sum_probs=25.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS   75 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~   75 (225)
                      ++++||||+||||+|+.+++.++...  ++.++
T Consensus         2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d   32 (183)
T TIGR01359         2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGD   32 (183)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeE--EECCh
Confidence            57999999999999999999987644  44433

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14530 adenylate kinase; Provisional

Probab=98.04  E-value=5.8e-06  Score=64.71  Aligned_cols=30  Identities=33%  Similarity=0.498  Sum_probs=26.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      +.++|.||||+||||+|+.|++.++.+++.
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~   33 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVT   33 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            368899999999999999999999876653

>KOG2227|consensus

Probab=98.02  E-value=8.2e-06  Score=69.25  Aligned_cols=161  Identities=19%  Similarity=0.235  Sum_probs=89.9

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----CC-CeEEeccCcccccC
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----NV-PIIVVDATSFTEAG   80 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----~~-~~~~~~~~~~~~~~   80 (225)
                      .++|.+.....+...+..+...          ...+.+.+.|-||||||.+...+-..+    .. ..++++|..+..+.
T Consensus       151 ~l~gRe~e~~~v~~F~~~hle~----------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~  220 (529)
T KOG2227|consen  151 TLKGRELEMDIVREFFSLHLEL----------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEAS  220 (529)
T ss_pred             CccchHHHHHHHHHHHHhhhhc----------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchH
Confidence            4677777777777766444332          234567799999999998877555443    22 34888888764321


Q ss_pred             ---------c----cCCcHHHHHHHHHHhcchhhhh-hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCC
Q psy5910          81 ---------Y----VGDDVESIIQKLLHECDYDVEL-AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVN  146 (225)
Q Consensus        81 ---------~----~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~  146 (225)
                               +    .+..........|..   .... ...-++++||+|.+..+.             +..|+.+++=  
T Consensus       221 aiF~kI~~~~~q~~~s~~~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~-------------~~vLy~lFew--  282 (529)
T KOG2227|consen  221 AIFKKIFSSLLQDLVSPGTGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRS-------------QTVLYTLFEW--  282 (529)
T ss_pred             HHHHHHHHHHHHHhcCCchhHHHHHHHHH---HHhcccceEEEEechhhHHhhcc-------------cceeeeehhc--
Confidence                     1    111101000111111   0111 236799999999999663             4455555541  


Q ss_pred             cCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-------ccccccccccc--chhcccCC
Q psy5910         147 LSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-------ETNFLEKLNNN--YNLICETN  212 (225)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-------~i~~~~~~~~~--~~l~~~~~  212 (225)
                              ...|..+  +++|+..|.       . ++-+-++-|+.-       .+.|++...++  +++...++
T Consensus       283 --------p~lp~sr--~iLiGiANs-------l-DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~  339 (529)
T KOG2227|consen  283 --------PKLPNSR--IILIGIANS-------L-DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLS  339 (529)
T ss_pred             --------ccCCcce--eeeeeehhh-------h-hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHh
Confidence                    1123333  666776666       3 444444443322       28888888877  55555544

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=98.02  E-value=5.3e-06  Score=62.79  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=27.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~   74 (225)
                      -++|.|+||+||||+|+.+++.++.+++.++..
T Consensus         4 ~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D   36 (175)
T cd00227           4 IIILNGGSSAGKSSIARALQSVLAEPWLHFGVD   36 (175)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence            466999999999999999999988777655544

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.02  E-value=2.1e-05  Score=66.23  Aligned_cols=25  Identities=32%  Similarity=0.577  Sum_probs=22.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ...+|+||||||||+|++.|++...
T Consensus       170 QR~lIvgppGvGKTTLaK~Ian~I~  194 (416)
T PRK09376        170 QRGLIVAPPKAGKTVLLQNIANSIT  194 (416)
T ss_pred             ceEEEeCCCCCChhHHHHHHHHHHH
Confidence            4688999999999999999998773

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.01  E-value=8.5e-06  Score=63.64  Aligned_cols=45  Identities=20%  Similarity=0.532  Sum_probs=40.8

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...++.....++.++..+++.++ +.||||||||++.|.|...+
T Consensus        13 ~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll   58 (263)
T COG1127          13 GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLL   58 (263)
T ss_pred             eeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccC
Confidence            4567778888899999999999999 99999999999999999777

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.00  E-value=6.9e-06  Score=59.96  Aligned_cols=30  Identities=37%  Similarity=0.636  Sum_probs=26.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      +.+.|+|||||||+|+.+++.++.+++..+
T Consensus         2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~   31 (147)
T cd02020           2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG   31 (147)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence            568999999999999999999999887665

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.00  E-value=7.9e-06  Score=61.72  Aligned_cols=33  Identities=39%  Similarity=0.649  Sum_probs=29.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      .+++|+|++|+||||+++.+++.++.+++..+.
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~   37 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   37 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence            478899999999999999999999988876654

>PRK04296 thymidine kinase; Provisional

Probab=98.00  E-value=3.9e-05  Score=58.88  Aligned_cols=31  Identities=16%  Similarity=0.235  Sum_probs=23.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      .+++||+|+||||++..++..+   +..++.+.+
T Consensus         5 ~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~   38 (190)
T PRK04296          5 EFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP   38 (190)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence            5689999999999988777655   555555543

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.99  E-value=1.2e-05  Score=60.70  Aligned_cols=50  Identities=22%  Similarity=0.370  Sum_probs=38.8

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCccc
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFT   77 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~   77 (225)
                      ...+++.+++.+++.+. ++||||+||||+.+.|......  --+.++..++.
T Consensus        15 ~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~   67 (223)
T COG2884          15 REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLS   67 (223)
T ss_pred             chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecc
Confidence            44778889999998887 8999999999999999987632  24555555553

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.98  E-value=0.00011  Score=56.75  Aligned_cols=35  Identities=37%  Similarity=0.626  Sum_probs=24.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      -++|+||+|+||||.+-.+|..+   +..+..++....
T Consensus         3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~   40 (196)
T PF00448_consen    3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY   40 (196)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred             EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence            45699999999999887777666   555555555443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=97.98  E-value=7.9e-06  Score=62.66  Aligned_cols=29  Identities=45%  Similarity=0.690  Sum_probs=25.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .|+++||||+||||+|+.|++.++.+++.
T Consensus         1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~   29 (194)
T cd01428           1 RILLLGPPGSGKGTQAERLAKKYGLPHIS   29 (194)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence            37899999999999999999998776544

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>PRK06762 hypothetical protein; Provisional

Probab=97.98  E-value=7.5e-06  Score=61.34  Aligned_cols=36  Identities=25%  Similarity=0.409  Sum_probs=29.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT   77 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~   77 (225)
                      -+++.|+|||||||+|+.+++.++..+..++...+.
T Consensus         4 li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r   39 (166)
T PRK06762          4 LIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR   39 (166)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence            456999999999999999999986667777665543

>KOG1808|consensus

Probab=97.97  E-value=1.3e-05  Score=78.17  Aligned_cols=138  Identities=24%  Similarity=0.284  Sum_probs=95.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc-CccCCcHH-HHHHHHHHhcchhhhhhCCCEEEEcchhhhc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA-GYVGDDVE-SIIQKLLHECDYDVELAEQSIIYIDEIDKIS  118 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~-~~~g~~~~-~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~  118 (225)
                      -++||.||.|||||.++..+|...+..+++++-....+. .|.|.-.. ..-...|+.....-+...+..+++||++-++
T Consensus       441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~  520 (1856)
T KOG1808|consen  441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP  520 (1856)
T ss_pred             CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence            489999999999999999999999999999887555331 12220000 0000011111011123588999999999988


Q ss_pred             ccccccCCCCCChHHHHHHHHHHHhc-CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910         119 KKTDVVSGKDVSGEGVQQSLLKLIEG-VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE  194 (225)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~Ll~~l~~-~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~  194 (225)
                      ..             +..+|.++++. ....+++......++.+  +++++|-|.+-..++. ..+..+++.||...
T Consensus       521 ~d-------------vL~aLnrllddnRel~ipe~~rlv~~h~~--f~lfatqn~~~~y~gr-k~lsRa~~~rf~e~  581 (1856)
T KOG1808|consen  521 HD-------------VLEALNRLLDDNRELFIPETQRLVKAHPE--FMLFATQNPPGTYGGR-KILSRALRNRFIEL  581 (1856)
T ss_pred             hH-------------HHHHHHhhhhhhccccccccceeeccCcc--hhhhhhccCccccchh-hhhhhcccccchhh
Confidence            66             78999999975 77777777777777777  8999999986544443 36777888887554

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.97  E-value=7e-06  Score=61.28  Aligned_cols=32  Identities=22%  Similarity=0.531  Sum_probs=25.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      +++.|||||||||+|+.+++.++..+  ++..++
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~--v~~D~~   32 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKF--IEGDDL   32 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeE--EeCccc
Confidence            46899999999999999999998655  444443

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.96  E-value=2.2e-05  Score=58.02  Aligned_cols=37  Identities=24%  Similarity=0.533  Sum_probs=31.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE   78 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~   78 (225)
                      -|+|+|.||+||||+|+++.+.+   +.+.+.+++..+..
T Consensus         4 vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~   43 (156)
T PF01583_consen    4 VIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRH   43 (156)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhh
Confidence            35599999999999999999888   78899999877754

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=97.95  E-value=8.9e-06  Score=59.82  Aligned_cols=32  Identities=34%  Similarity=0.658  Sum_probs=25.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      +++.|+||+||||+|+.+++.++..++  +...+
T Consensus         2 i~l~G~~GsGKST~a~~l~~~~~~~~i--~~D~~   33 (150)
T cd02021           2 IVVMGVSGSGKSTVGKALAERLGAPFI--DGDDL   33 (150)
T ss_pred             EEEEcCCCCCHHHHHHHHHhhcCCEEE--eCccc
Confidence            569999999999999999999876544  44444

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.95  E-value=8.9e-06  Score=61.71  Aligned_cols=31  Identities=39%  Similarity=0.693  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~   74 (225)
                      .+++.||||+||||+|+.|++.++.  ..++..
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i--~hlstg   32 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGL--PHLDTG   32 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC--cEEcHh
Confidence            5789999999999999999999544  555533

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=97.95  E-value=0.00012  Score=57.90  Aligned_cols=33  Identities=24%  Similarity=0.404  Sum_probs=23.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHH-HHHh--CCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTL-AKII--NVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~i-a~~~--~~~~~~~~~   73 (225)
                      .-++++||||||||++|..+ ++.+  +.+..+++.
T Consensus        25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~   60 (230)
T PRK08533         25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST   60 (230)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            35669999999999997554 4443  455666654

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=97.94  E-value=3.3e-05  Score=57.59  Aligned_cols=53  Identities=19%  Similarity=0.401  Sum_probs=39.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc-----cCccCCcHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE-----AGYVGDDVESIIQKLL   94 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~   94 (225)
                      .+.|+|.||+||||+|.++.+.+   |...+.+++..+..     -+|.-++-..+++.+.
T Consensus        25 viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRva   85 (197)
T COG0529          25 VIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVA   85 (197)
T ss_pred             EEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHH
Confidence            45599999999999999999988   88899999987753     2444444444444443

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=97.94  E-value=1.3e-05  Score=62.82  Aligned_cols=37  Identities=30%  Similarity=0.588  Sum_probs=32.3

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus        17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   54 (218)
T cd03255          17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLD   54 (218)
T ss_pred             eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence            45678888888888777 99999999999999999876

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=97.93  E-value=1.3e-05  Score=60.24  Aligned_cols=31  Identities=35%  Similarity=0.633  Sum_probs=27.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      +++|+|++|||||++++.+|+.++.+++..+
T Consensus         4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D   34 (171)
T PRK03731          4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD   34 (171)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence            5789999999999999999999999887654

>PRK13946 shikimate kinase; Provisional

Probab=97.92  E-value=1.2e-05  Score=61.39  Aligned_cols=34  Identities=32%  Similarity=0.641  Sum_probs=29.8

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      ...|+++|.+|||||++++.+|+.++.+++..+.
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~   43 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT   43 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence            3578899999999999999999999998876553

>PRK06547 hypothetical protein; Provisional

Probab=97.91  E-value=1.2e-05  Score=60.70  Aligned_cols=31  Identities=29%  Similarity=0.522  Sum_probs=25.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .|++.|+|||||||+|+.+++.++.+++..+
T Consensus        17 ~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d   47 (172)
T PRK06547         17 TVLIDGRSGSGKTTLAGALAARTGFQLVHLD   47 (172)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence            5568899999999999999999887765443

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=97.91  E-value=1.9e-05  Score=62.20  Aligned_cols=44  Identities=30%  Similarity=0.594  Sum_probs=35.5

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         6 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (227)
T cd03260           6 LNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLN   50 (227)
T ss_pred             EEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            444444445678888888888777 99999999999999999876

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=97.91  E-value=8.4e-05  Score=57.92  Aligned_cols=24  Identities=33%  Similarity=0.779  Sum_probs=21.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -+.|+.|||||||||+.|-+|+.+
T Consensus       138 lntLiigpP~~GKTTlLRdiaR~~  161 (308)
T COG3854         138 LNTLIIGPPQVGKTTLLRDIARLL  161 (308)
T ss_pred             eeeEEecCCCCChHHHHHHHHHHh
Confidence            468899999999999999999877

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=97.91  E-value=2e-05  Score=62.44  Aligned_cols=44  Identities=20%  Similarity=0.568  Sum_probs=35.9

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.....+++.++....+.++ |.||+|+|||||++.++..+
T Consensus         6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (235)
T cd03261           6 LTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLL   50 (235)
T ss_pred             EEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444455556778888888888777 99999999999999999876

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF13245 AAA_19: Part of AAA domain

Probab=97.90  E-value=2.6e-05  Score=50.54  Aligned_cols=23  Identities=30%  Similarity=0.664  Sum_probs=17.6

Q ss_pred             cEEEEcCCCCcHH-HHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKT-LMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT-~la~~ia~~~   64 (225)
                      -+++.|||||||| ++++.++...
T Consensus        12 ~~vv~g~pGtGKT~~~~~~i~~l~   35 (76)
T PF13245_consen   12 LFVVQGPPGTGKTTTLAARIAELL   35 (76)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHH
Confidence            3446999999999 5666777665

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.90  E-value=1.4e-05  Score=60.91  Aligned_cols=29  Identities=21%  Similarity=0.351  Sum_probs=24.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      -+++.||||+||||+|+.+++.++...+.
T Consensus         5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~   33 (188)
T TIGR01360         5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS   33 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence            46699999999999999999998765443

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.90  E-value=2.2e-05  Score=61.46  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia   61 (225)
                      ..+|+||+||+|||++|+.++
T Consensus        13 ~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        13 NMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             cEEEEECCCCCCHHHHHHhcC
Confidence            468899999999999999986

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.90  E-value=0.00013  Score=56.56  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=23.8

Q ss_pred             ecccceeeeCCc-EEEEcCCCCcHHHHHHHHHH
Q psy5910          31 LKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        31 ~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..+.++..+.+. ++|+||+|+|||++.+.++.
T Consensus        19 ~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          19 PNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             EeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            444555555534 55999999999999998874

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.90  E-value=0.00016  Score=54.41  Aligned_cols=33  Identities=21%  Similarity=0.369  Sum_probs=28.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~   74 (225)
                      .+++.|+||+|||++|..++..++.+++++...
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~   35 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA   35 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence            478999999999999999999888777666543

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.89  E-value=1.4e-05  Score=63.01  Aligned_cols=30  Identities=33%  Similarity=0.486  Sum_probs=26.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .+++.||||+||||+|+.+|+.++.+++..
T Consensus         8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~   37 (229)
T PTZ00088          8 KIVLFGAPGVGKGTFAEILSKKENLKHINM   37 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEEC
Confidence            588999999999999999999998766554

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.89  E-value=3.1e-05  Score=60.44  Aligned_cols=45  Identities=22%  Similarity=0.588  Sum_probs=37.9

Q ss_pred             eEecc-cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          21 VYNHY-KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        21 l~~~~-~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +...| .+...++++++..+.+.++ ++||||+|||||.|++....+
T Consensus         9 l~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d   55 (258)
T COG3638           9 LSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD   55 (258)
T ss_pred             eeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC
Confidence            34445 6778889999999998877 999999999999999998663

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=97.89  E-value=1.8e-05  Score=61.43  Aligned_cols=43  Identities=19%  Similarity=0.482  Sum_probs=34.8

Q ss_pred             EecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+.....+++.++..+.+.++ |.||+|+|||||++.++..+
T Consensus         5 ~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   48 (206)
T TIGR03608         5 SKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLE   48 (206)
T ss_pred             EEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            33444445778888888888776 99999999999999999876

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>KOG0055|consensus

Probab=97.89  E-value=0.00017  Score=68.19  Aligned_cols=57  Identities=25%  Similarity=0.493  Sum_probs=40.4

Q ss_pred             eeEecccce---EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcc
Q psy5910          20 GVYNHYKRL---FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP--IIVVDATSF   76 (225)
Q Consensus        20 ~l~~~~~~~---~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~   76 (225)
                      .+++.|...   +.+++.++..+.+... |+||+||||||+...+.+.++..  -+.+++.++
T Consensus       355 nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di  417 (1228)
T KOG0055|consen  355 NVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDI  417 (1228)
T ss_pred             EEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccc
Confidence            445555433   4467888888887666 99999999999999999988432  344444433

>PRK02496 adk adenylate kinase; Provisional

Probab=97.89  E-value=1.4e-05  Score=60.91  Aligned_cols=30  Identities=30%  Similarity=0.631  Sum_probs=26.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .+++.||||+||||+|+.|++.++.+.+..
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~   32 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST   32 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence            478999999999999999999988765543

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.89  E-value=0.00012  Score=63.19  Aligned_cols=37  Identities=32%  Similarity=0.532  Sum_probs=28.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      +..++++|++|+||||++..+|..+   +..+..+++...
T Consensus        95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~  134 (437)
T PRK00771         95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY  134 (437)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence            4467799999999999999998877   556666666544

>PRK14528 adenylate kinase; Provisional

Probab=97.89  E-value=1.6e-05  Score=60.85  Aligned_cols=30  Identities=37%  Similarity=0.706  Sum_probs=26.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .+++.||||+||||+|+.+++.++.+.+..
T Consensus         3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~   32 (186)
T PRK14528          3 NIIFMGPPGAGKGTQAKILCERLSIPQIST   32 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence            588999999999999999999998776543

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.88  E-value=2.3e-05  Score=61.02  Aligned_cols=37  Identities=24%  Similarity=0.547  Sum_probs=32.0

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus        14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   51 (211)
T cd03225          14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLL   51 (211)
T ss_pred             eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            45678888888888777 99999999999999999865

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=97.88  E-value=2.6e-05  Score=60.70  Aligned_cols=44  Identities=34%  Similarity=0.610  Sum_probs=34.7

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         6 l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (210)
T cd03269           6 VTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGII   50 (210)
T ss_pred             EEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            333444445677888888888776 99999999999999999765

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=97.87  E-value=2.5e-05  Score=61.31  Aligned_cols=44  Identities=25%  Similarity=0.486  Sum_probs=35.1

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus         6 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (222)
T cd03224           6 LNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLL   50 (222)
T ss_pred             EEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444455678888888888777 99999999999999999765

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=97.86  E-value=2.7e-05  Score=61.90  Aligned_cols=44  Identities=23%  Similarity=0.542  Sum_probs=35.4

Q ss_pred             eEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.. ...+++.++...++.++ |.||+|+|||||++.|+..+
T Consensus         6 l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (241)
T cd03256           6 LSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLV   51 (241)
T ss_pred             EEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            4444443 45778888888888777 99999999999999999765

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=97.86  E-value=0.00013  Score=65.31  Aligned_cols=49  Identities=27%  Similarity=0.453  Sum_probs=40.2

Q ss_pred             eeeeEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC
Q psy5910          18 SVGVYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        18 ~~~l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      .+.+.+.|. .....++.++..+++..+ ++||+|+||||+++.+.+.+..
T Consensus       331 f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~  381 (567)
T COG1132         331 FENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDP  381 (567)
T ss_pred             EEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            445666676 456788899999888777 9999999999999999998843

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=97.86  E-value=3.2e-05  Score=60.68  Aligned_cols=37  Identities=30%  Similarity=0.690  Sum_probs=32.2

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus        17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   54 (220)
T cd03293          17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLE   54 (220)
T ss_pred             eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45778888888888776 99999999999999999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=97.86  E-value=2.8e-05  Score=61.80  Aligned_cols=45  Identities=22%  Similarity=0.518  Sum_probs=36.6

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++....+.++ |.||+|+|||||++.++...
T Consensus         7 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (239)
T cd03296           7 NVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLE   52 (239)
T ss_pred             eEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444555556788888988888777 99999999999999999875

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=97.85  E-value=2.3e-05  Score=62.40  Aligned_cols=44  Identities=20%  Similarity=0.561  Sum_probs=35.0

Q ss_pred             eEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|. ....+++.++..+++.++ |.||+|+|||||+++|+...
T Consensus         7 l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   52 (243)
T TIGR02315         7 LSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLV   52 (243)
T ss_pred             eeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            344444 445678888888888777 99999999999999999765

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.85  E-value=0.00018  Score=57.55  Aligned_cols=34  Identities=35%  Similarity=0.624  Sum_probs=27.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      |+|.|+||+||||+|+.+++.+   +.++..++...+
T Consensus         2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l   38 (249)
T TIGR03574         2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI   38 (249)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence            5799999999999999999987   455666665444

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=97.85  E-value=3.1e-05  Score=60.35  Aligned_cols=44  Identities=18%  Similarity=0.563  Sum_probs=35.4

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||.+.++..+
T Consensus         6 l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03262           6 LHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLE   50 (213)
T ss_pred             EEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444444455678888888887776 99999999999999999765

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=97.85  E-value=3.1e-05  Score=61.25  Aligned_cols=45  Identities=20%  Similarity=0.484  Sum_probs=36.4

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus         5 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (232)
T cd03218           5 NLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLV   50 (232)
T ss_pred             EEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444555556788888988888777 99999999999999999765

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>TIGR00767 rho transcription termination factor Rho

Probab=97.85  E-value=5.5e-05  Score=63.95  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             cceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          34 KNIYLEKS-NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        34 ~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ..+...++ .++++||||||||++++.+++.+.
T Consensus       161 ~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       161 LFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             eEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            33444443 467999999999999999999864

Members of this family differ in the specificity of RNA binding.

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=97.85  E-value=3e-05  Score=61.75  Aligned_cols=44  Identities=30%  Similarity=0.450  Sum_probs=35.6

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~   63 (225)
                      .+...|.....+++.++..+++.++ |.||+|+|||||++.|+..
T Consensus         5 ~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl   49 (243)
T TIGR01978         5 DLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGH   49 (243)
T ss_pred             eEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3444455556788889999888766 9999999999999999986

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.84  E-value=1.6e-05  Score=59.01  Aligned_cols=30  Identities=30%  Similarity=0.466  Sum_probs=26.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .++++|.|||||||+|+.++ .++..++.++
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~   31 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN   31 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence            47799999999999999999 8888877765

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.84  E-value=0.00016  Score=58.71  Aligned_cols=36  Identities=19%  Similarity=0.489  Sum_probs=32.4

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~   63 (225)
                      ...+++.+++.+.+.++ ++|.||.|||||.|.+-..
T Consensus        19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~L   55 (339)
T COG1135          19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLL   55 (339)
T ss_pred             eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhcc
Confidence            56788999999999999 9999999999999988743

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=97.84  E-value=3.4e-05  Score=58.53  Aligned_cols=44  Identities=27%  Similarity=0.582  Sum_probs=35.1

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus         6 l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   50 (178)
T cd03229           6 VSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLE   50 (178)
T ss_pred             EEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            333444445678888888888777 99999999999999999765

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=97.84  E-value=3.1e-05  Score=61.17  Aligned_cols=44  Identities=25%  Similarity=0.488  Sum_probs=35.6

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus         6 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (230)
T TIGR03410         6 LNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLL   50 (230)
T ss_pred             EEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444455456778888888888766 99999999999999999776

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=97.84  E-value=0.00033  Score=53.60  Aligned_cols=35  Identities=26%  Similarity=0.544  Sum_probs=31.3

Q ss_pred             eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+.++....+.|. +.||.|.||||+.|.||..+
T Consensus        17 AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL   52 (245)
T COG4555          17 AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLL   52 (245)
T ss_pred             hhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhc
Confidence            456778888888898 99999999999999999988

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=97.83  E-value=2.8e-05  Score=61.32  Aligned_cols=45  Identities=27%  Similarity=0.474  Sum_probs=36.5

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus        12 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   57 (225)
T PRK10247         12 NVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLI   57 (225)
T ss_pred             ccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3444455556788889999988777 99999999999999999865

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=97.83  E-value=3.2e-05  Score=60.30  Aligned_cols=44  Identities=27%  Similarity=0.590  Sum_probs=35.4

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus         6 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03301           6 VTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLE   50 (213)
T ss_pred             eEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            444444455678888888887766 99999999999999999875

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.83  E-value=0.00021  Score=55.25  Aligned_cols=22  Identities=27%  Similarity=0.496  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -++|+||+|+||||++|.|+..
T Consensus        27 ~~~ltGpNg~GKSTllr~i~~~   48 (199)
T cd03283          27 GILITGSNMSGKSTFLRTIGVN   48 (199)
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            4559999999999999999853

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.83  E-value=2.9e-05  Score=62.19  Aligned_cols=44  Identities=23%  Similarity=0.554  Sum_probs=35.4

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus         9 l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14247          9 LKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLI   53 (250)
T ss_pred             eEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            344444455778888988888776 99999999999999999875

>TIGR01351 adk adenylate kinases

Probab=97.83  E-value=2e-05  Score=61.47  Aligned_cols=28  Identities=36%  Similarity=0.656  Sum_probs=24.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      ++++||||+||||+|+.+++.++.+.+.
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is   29 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS   29 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence            7899999999999999999998876554

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.83  E-value=3.6e-05  Score=48.90  Aligned_cols=31  Identities=32%  Similarity=0.616  Sum_probs=23.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh-CCCeEEecc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII-NVPIIVVDA   73 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~~   73 (225)
                      +.+.|+||+|||++++.+++.+ +.++..++.
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~   33 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE   33 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence            5689999999999999999986 234444433

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>KOG1051|consensus

Probab=97.83  E-value=9.4e-05  Score=68.15  Aligned_cols=130  Identities=22%  Similarity=0.260  Sum_probs=77.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCcccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATSFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSII  109 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl  109 (225)
                      ++-+|+|.||+|||.++.-+++..          +..++.++...+.. ..+.| +++..+..+.+....   ...+.|+
T Consensus       209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rg-e~E~rlk~l~k~v~~---~~~gvIL  284 (898)
T KOG1051|consen  209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRG-EFEERLKELLKEVES---GGGGVIL  284 (898)
T ss_pred             CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccch-HHHHHHHHHHHHHhc---CCCcEEE
Confidence            577899999999999999998876          23355555544432 22333 345566666554310   3467799


Q ss_pred             EEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecC-cceeeccCccccHHHHHH
Q psy5910         110 YIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTT-NILFIAGGAFSGIENFII  188 (225)
Q Consensus       110 ~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~tt-n~~~i~~~~~~~l~~al~  188 (225)
                      |+||++-+......     .....+.+.|-..|....                 +.+|+|| +.-+   ...-+-+|++-
T Consensus       285 figelh~lvg~g~~-----~~~~d~~nlLkp~L~rg~-----------------l~~IGatT~e~Y---~k~iekdPalE  339 (898)
T KOG1051|consen  285 FLGELHWLVGSGSN-----YGAIDAANLLKPLLARGG-----------------LWCIGATTLETY---RKCIEKDPALE  339 (898)
T ss_pred             EecceeeeecCCCc-----chHHHHHHhhHHHHhcCC-----------------eEEEecccHHHH---HHHHhhCcchh
Confidence            99999999866432     113335555555655322                 4455544 3211   00124578899


Q ss_pred             hhcccc-ccccc
Q psy5910         189 NRINQE-TNFLE  199 (225)
Q Consensus       189 ~Rf~~~-i~~~~  199 (225)
                      +||+.. +..|.
T Consensus       340 rrw~l~~v~~pS  351 (898)
T KOG1051|consen  340 RRWQLVLVPIPS  351 (898)
T ss_pred             hCcceeEeccCc
Confidence            999766 44444

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=97.83  E-value=3.2e-05  Score=62.16  Aligned_cols=44  Identities=34%  Similarity=0.705  Sum_probs=35.4

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus         7 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   51 (255)
T PRK11248          7 LYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFV   51 (255)
T ss_pred             EEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444444445678888888888777 99999999999999999875

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.83  E-value=0.00011  Score=56.93  Aligned_cols=28  Identities=36%  Similarity=0.615  Sum_probs=22.5

Q ss_pred             cceeeeCC--cEEEEcCCCCcHHHHHHHHH
Q psy5910          34 KNIYLEKS--NILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        34 ~~~~~~~~--~vLl~Gp~GtGKT~la~~ia   61 (225)
                      .++....+  .++|+||.|+||||+.+.++
T Consensus        20 ~~~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          20 LDIQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             ceEEECCCceEEEEECCCCCChHHHHHHHH
Confidence            44555554  47799999999999999988

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.83  E-value=9.7e-05  Score=57.30  Aligned_cols=127  Identities=16%  Similarity=0.234  Sum_probs=66.7

Q ss_pred             EEcCCCCcHHHHHHHHHHHhCCCeEE-eccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccc
Q psy5910          45 LVGPTGCGKTLMVKTLAKIINVPIIV-VDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDV  123 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~  123 (225)
                      +.|+||+||||+|+.|+..++.+.+. +.-.+.    |....  .   .         .......+-.|..+++...   
T Consensus        13 IaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y----Yk~~~--~---~---------~~~~~~~~n~d~p~A~D~d---   71 (218)
T COG0572          13 IAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY----YKDQS--H---L---------PFEERNKINYDHPEAFDLD---   71 (218)
T ss_pred             EeCCCCCCHHHHHHHHHHHhCcCcceEeecccc----ccchh--h---c---------CHhhcCCcCccChhhhcHH---
Confidence            89999999999999999999865222 222222    22111  0   0         0112233333444443322   


Q ss_pred             cCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         124 VSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       124 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                               -+.+.|..++.+.....|........... .... ...+.++|.-|-.---|+.+++.++.+|....+...
T Consensus        72 ---------Ll~~~L~~L~~g~~v~~P~yd~~~~~r~~-~~i~-~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~  140 (218)
T COG0572          72 ---------LLIEHLKDLKQGKPVDLPVYDYKTHTREP-ETIK-VEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADV  140 (218)
T ss_pred             ---------HHHHHHHHHHcCCcccccccchhcccccC-Cccc-cCCCcEEEEecccccccHHHHhhcCEEEEEeCCccH
Confidence                     14556666777666555544332222221 0111 222333333332324467888899999888777654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.82  E-value=2.5e-05  Score=53.89  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=23.8

Q ss_pred             ecccceeeeCC-cEEEEcCCCCcHHHHHHHHH
Q psy5910          31 LKSKNIYLEKS-NILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        31 ~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia   61 (225)
                      +++.++....+ .+.|.||||||||||++.+.
T Consensus         5 L~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           5 LHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            34455556654 45699999999999999987

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=97.82  E-value=3.8e-05  Score=59.87  Aligned_cols=44  Identities=27%  Similarity=0.446  Sum_probs=34.3

Q ss_pred             eEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++....+.+.|.||+|+|||||++.++..+
T Consensus         6 ~~~~~~~~~~l~~vs~~i~~g~~~i~G~nGsGKSTLl~~l~Gl~   49 (211)
T cd03264           6 LTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLT   49 (211)
T ss_pred             EEEEECCEEEEcceeEEEcCCcEEEECCCCCCHHHHHHHHhCCC
Confidence            34444445577888888888744499999999999999999765

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.82  E-value=0.00033  Score=59.49  Aligned_cols=35  Identities=37%  Similarity=0.616  Sum_probs=26.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccCc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDATS   75 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~~   75 (225)
                      ..++|+||+|+||||++..+|..+       +..+..+++..
T Consensus       175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt  216 (388)
T PRK12723        175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDN  216 (388)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccC
Confidence            467799999999999999888765       23455555543

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.82  E-value=2.9e-05  Score=62.25  Aligned_cols=45  Identities=22%  Similarity=0.654  Sum_probs=36.6

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus         9 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   54 (253)
T PRK14267          9 NLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLL   54 (253)
T ss_pred             eEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            3444455556788889999888777 99999999999999999875

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=97.82  E-value=2.3e-05  Score=62.01  Aligned_cols=36  Identities=22%  Similarity=0.519  Sum_probs=31.9

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.++..+++.++ |.||+|+|||||++.|+..+
T Consensus        19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   55 (233)
T cd03258          19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLE   55 (233)
T ss_pred             eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5678888888888777 99999999999999999876

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=97.82  E-value=3.3e-05  Score=64.92  Aligned_cols=45  Identities=22%  Similarity=0.589  Sum_probs=36.6

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus        11 ~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~   56 (351)
T PRK11432         11 NITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLE   56 (351)
T ss_pred             eEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3445555556678888989888777 99999999999999999876

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=97.82  E-value=3.4e-05  Score=60.51  Aligned_cols=44  Identities=27%  Similarity=0.432  Sum_probs=35.0

Q ss_pred             eEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+..  ...+++.++...++.++ |.||+|+|||||++.++...
T Consensus         6 l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (220)
T cd03263           6 LTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGEL   52 (220)
T ss_pred             eEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344443  45778888888888766 99999999999999999865

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.82  E-value=0.00018  Score=60.87  Aligned_cols=75  Identities=21%  Similarity=0.391  Sum_probs=43.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc--------cCccCCcH----HHHHHHHHHhcchhhhhhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE--------AGYVGDDV----ESIIQKLLHECDYDVELAEQ  106 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~--------~~~~g~~~----~~~~~~~~~~~~~~~~~~~~  106 (225)
                      -++++|+||+|||+++..++...   +.++++++......        -++.....    ...+..+.+.    +....+
T Consensus        84 lvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~----i~~~~~  159 (372)
T cd01121          84 VILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILAS----IEELKP  159 (372)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHH----HHhcCC
Confidence            45699999999999999888655   34677776543211        00000000    0011112111    133478


Q ss_pred             CEEEEcchhhhccc
Q psy5910         107 SIIYIDEIDKISKK  120 (225)
Q Consensus       107 ~vl~iDEid~l~~~  120 (225)
                      .+|+||++..+...
T Consensus       160 ~lVVIDSIq~l~~~  173 (372)
T cd01121         160 DLVIIDSIQTVYSS  173 (372)
T ss_pred             cEEEEcchHHhhcc
Confidence            89999999998643

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.82  E-value=3.9e-05  Score=59.35  Aligned_cols=44  Identities=30%  Similarity=0.464  Sum_probs=35.7

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         7 l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   51 (200)
T PRK13540          7 LDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLL   51 (200)
T ss_pred             EEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            444455556788888988888777 99999999999999999865

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.81  E-value=3.6e-05  Score=61.71  Aligned_cols=44  Identities=18%  Similarity=0.607  Sum_probs=36.0

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.....+++.++..+++.++ |.||+|+|||||++.|+..+
T Consensus        10 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (252)
T PRK14256         10 LNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMH   54 (252)
T ss_pred             EEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            444454456788889998888777 99999999999999999875

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.81  E-value=1.9e-05  Score=56.16  Aligned_cols=22  Identities=41%  Similarity=0.560  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      |+|.|+||+||||+|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999986

...

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=97.81  E-value=2.7e-05  Score=60.78  Aligned_cols=42  Identities=24%  Similarity=0.507  Sum_probs=33.9

Q ss_pred             ecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          23 NHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus         7 ~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   49 (213)
T cd03235           7 VSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLL   49 (213)
T ss_pred             eEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3344445678888888888776 99999999999999999765

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=97.81  E-value=2.6e-05  Score=60.87  Aligned_cols=37  Identities=32%  Similarity=0.567  Sum_probs=32.0

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++....+.++ |.||+|+|||||++.|+..+
T Consensus        15 ~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~   52 (214)
T TIGR02673        15 VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGAL   52 (214)
T ss_pred             ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45678888888888777 99999999999999999875

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=97.81  E-value=3.3e-05  Score=61.23  Aligned_cols=44  Identities=23%  Similarity=0.489  Sum_probs=35.2

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus         6 l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   50 (236)
T cd03219           6 LTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFL   50 (236)
T ss_pred             eEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence            344444455778888888888776 99999999999999999765

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=97.81  E-value=3.5e-05  Score=64.89  Aligned_cols=45  Identities=27%  Similarity=0.625  Sum_probs=36.5

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus         9 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~   54 (353)
T TIGR03265         9 NIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLE   54 (353)
T ss_pred             EEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            4455555556678888888887777 99999999999999999876

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins

Probab=97.81  E-value=5.2e-05  Score=58.52  Aligned_cols=95  Identities=24%  Similarity=0.346  Sum_probs=51.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccccc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTD  122 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~  122 (225)
                      ++|.|+-|+|||++.+.|+..    ++ .+.  +..  ....+   ....+          ....++.+||++.+...  
T Consensus        55 lvl~G~QG~GKStf~~~L~~~----~~-~d~--~~~--~~~kd---~~~~l----------~~~~iveldEl~~~~k~--  110 (198)
T PF05272_consen   55 LVLVGKQGIGKSTFFRKLGPE----YF-SDS--IND--FDDKD---FLEQL----------QGKWIVELDELDGLSKK--  110 (198)
T ss_pred             eeEecCCcccHHHHHHHHhHH----hc-cCc--ccc--CCCcH---HHHHH----------HHhHheeHHHHhhcchh--
Confidence            449999999999999999654    11 111  110  11111   11122          34469999999998844  


Q ss_pred             ccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910         123 VVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       123 ~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                                 -.+.|-.++-..........++......-...+++|||.
T Consensus       111 -----------~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~  149 (198)
T PF05272_consen  111 -----------DVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTND  149 (198)
T ss_pred             -----------hHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCC
Confidence                       345666666543333322222211111112567888887

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=97.81  E-value=3.7e-05  Score=59.97  Aligned_cols=44  Identities=30%  Similarity=0.613  Sum_probs=35.4

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus         6 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (213)
T cd03259           6 LSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLE   50 (213)
T ss_pred             eEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444455778888988888777 99999999999999999865

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=97.81  E-value=2.8e-05  Score=64.78  Aligned_cols=38  Identities=16%  Similarity=0.407  Sum_probs=34.1

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ...+++.++....+.++ |+||+|||||||+++|+..+.
T Consensus        20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~   58 (326)
T PRK11022         20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLID   58 (326)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            45788999999999888 999999999999999998764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.81  E-value=4.9e-05  Score=58.73  Aligned_cols=25  Identities=36%  Similarity=0.676  Sum_probs=21.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +-+++.||+|+||||++++++..+.
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhh
Confidence            3567999999999999999888774

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.80  E-value=4.3e-05  Score=59.43  Aligned_cols=44  Identities=25%  Similarity=0.413  Sum_probs=35.4

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++..+++.++ |.||+|+|||||++.++...
T Consensus         8 l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539          8 LACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             EEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444455678888888888777 99999999999999999875

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=97.80  E-value=4.1e-05  Score=60.07  Aligned_cols=44  Identities=25%  Similarity=0.568  Sum_probs=35.2

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++....+.++ |.||+|+|||||.+.|+..+
T Consensus         6 ~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   50 (220)
T cd03265           6 LVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLL   50 (220)
T ss_pred             EEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444455778888888887776 99999999999999999865

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=97.80  E-value=2.9e-05  Score=60.28  Aligned_cols=37  Identities=35%  Similarity=0.511  Sum_probs=31.3

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++....+.++ |.||+|+|||||.+.++...
T Consensus        13 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          13 TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44677778888887766 99999999999999999865

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.80  E-value=4.1e-05  Score=61.67  Aligned_cols=45  Identities=33%  Similarity=0.696  Sum_probs=36.2

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus        17 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   62 (259)
T PRK14274         17 GMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMI   62 (259)
T ss_pred             eEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3444555556788888988887766 99999999999999999865

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=97.80  E-value=3.6e-05  Score=62.03  Aligned_cols=45  Identities=27%  Similarity=0.665  Sum_probs=36.6

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus        18 ~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   63 (260)
T PRK10744         18 NLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY   63 (260)
T ss_pred             EEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4444555556788889999888777 99999999999999999765

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.80  E-value=2.6e-05  Score=61.01  Aligned_cols=29  Identities=34%  Similarity=0.645  Sum_probs=25.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .|+++||||+||||+|+.+|+.++.+.+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is   30 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS   30 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            47899999999999999999999875554

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.80  E-value=3.6e-05  Score=59.73  Aligned_cols=44  Identities=23%  Similarity=0.439  Sum_probs=35.8

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+.+.++..+++.++ |.||+|+|||||++.|+..+
T Consensus         7 l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538          7 LACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             EEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444556788889999888777 99999999999999999875

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=97.80  E-value=3.1e-05  Score=61.99  Aligned_cols=44  Identities=16%  Similarity=0.495  Sum_probs=35.7

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++..+++.++ |.||+|+|||||++.|+..+
T Consensus         9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (250)
T PRK11264          9 LVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLE   53 (250)
T ss_pred             eEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344444456788889998888777 99999999999999999765

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.80  E-value=0.00015  Score=55.60  Aligned_cols=25  Identities=44%  Similarity=0.566  Sum_probs=22.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      -++|+|+||+||||+|+.+++.+..
T Consensus         3 LiIlTGyPgsGKTtfakeLak~L~~   27 (261)
T COG4088           3 LIILTGYPGSGKTTFAKELAKELRQ   27 (261)
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHH
Confidence            4679999999999999999999843

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=97.80  E-value=3.8e-05  Score=61.58  Aligned_cols=44  Identities=25%  Similarity=0.498  Sum_probs=35.7

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         6 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (252)
T TIGR03005         6 VTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLE   50 (252)
T ss_pred             EEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444444456778888888888777 99999999999999999865

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK06696 uridine kinase; Validated

Probab=97.79  E-value=2.4e-05  Score=61.62  Aligned_cols=35  Identities=31%  Similarity=0.473  Sum_probs=28.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      -|.+.|+||+||||+|+.|++.+   +.+++.+...++
T Consensus        24 iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf   61 (223)
T PRK06696         24 RVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF   61 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence            34499999999999999999998   566666665554

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=97.79  E-value=4.1e-05  Score=60.75  Aligned_cols=44  Identities=20%  Similarity=0.404  Sum_probs=35.1

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         7 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (236)
T TIGR03864         7 LSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLY   51 (236)
T ss_pred             eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            333444455678888888888777 99999999999999999765

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=97.79  E-value=4.5e-05  Score=59.29  Aligned_cols=44  Identities=27%  Similarity=0.529  Sum_probs=35.1

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.....+++.++..+.+.++ +.||+|+|||||++.++...
T Consensus         6 l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~   50 (208)
T cd03268           6 LTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLI   50 (208)
T ss_pred             EEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            344444456778888888888776 99999999999999999765

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=97.79  E-value=3.3e-05  Score=60.29  Aligned_cols=44  Identities=32%  Similarity=0.495  Sum_probs=34.5

Q ss_pred             eEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.. ...+++.++...++.++ |.||+|+|||||++.++..+
T Consensus         6 l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~   51 (214)
T cd03292           6 VTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEE   51 (214)
T ss_pred             EEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444432 35677888888888766 99999999999999999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=97.78  E-value=4.9e-05  Score=57.40  Aligned_cols=41  Identities=32%  Similarity=0.621  Sum_probs=33.3

Q ss_pred             cccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          24 HYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.....+++.++..+++.++ +.||+|+|||||++.++...
T Consensus         9 ~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230           9 RYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             EECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            333345677888888887666 99999999999999999865

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=97.78  E-value=3.1e-05  Score=62.35  Aligned_cols=46  Identities=24%  Similarity=0.501  Sum_probs=36.8

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|.....+++.++...++.++ |.||+|+|||||++.|+..+
T Consensus        16 ~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~   62 (257)
T PRK11247         16 NAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLE   62 (257)
T ss_pred             EEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            34455555556778888988887666 99999999999999999876

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=97.78  E-value=4.6e-05  Score=61.68  Aligned_cols=46  Identities=22%  Similarity=0.515  Sum_probs=37.3

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...+.....+++.++..+++.++ |.||+|+|||||++.|+....
T Consensus        24 nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   70 (267)
T PRK14235         24 DVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND   70 (267)
T ss_pred             eEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4455555556788899999888777 999999999999999998753

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.78  E-value=3e-05  Score=55.77  Aligned_cols=27  Identities=33%  Similarity=0.543  Sum_probs=23.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      ..++|.|+.|+||||+++.+++.++..
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            356699999999999999999998754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=4.4e-05  Score=60.79  Aligned_cols=44  Identities=23%  Similarity=0.386  Sum_probs=35.3

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         8 l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (242)
T PRK11124          8 INCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLE   52 (242)
T ss_pred             eEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444454556778888888887766 99999999999999999775

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=97.77  E-value=4e-05  Score=64.57  Aligned_cols=45  Identities=27%  Similarity=0.630  Sum_probs=36.0

Q ss_pred             eeEecc-cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHY-KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~-~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...| .....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus         8 ~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~   54 (356)
T PRK11650          8 AVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLE   54 (356)
T ss_pred             eEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCC
Confidence            344444 4445678888999888877 99999999999999999876

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.77  E-value=0.00017  Score=63.85  Aligned_cols=35  Identities=31%  Similarity=0.565  Sum_probs=28.1

Q ss_pred             eecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          30 LLKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        30 ~~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+++.++..+++ .+++.||||||||+|.|+||...
T Consensus       408 ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW  443 (604)
T COG4178         408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW  443 (604)
T ss_pred             eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            345566666654 57799999999999999999876

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=97.77  E-value=0.00053  Score=53.97  Aligned_cols=36  Identities=25%  Similarity=0.348  Sum_probs=24.8

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccC
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDAT   74 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~   74 (225)
                      +...+|+.||||||||++|..++...    +.++++++..
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~e   57 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFE   57 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEec
Confidence            33467799999999999988765332    6777777653

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.77  E-value=4.6e-05  Score=61.87  Aligned_cols=44  Identities=23%  Similarity=0.406  Sum_probs=35.8

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++....+.++ |.||+|+|||||++.|+..+
T Consensus         7 l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~   51 (272)
T PRK13547          7 LHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDL   51 (272)
T ss_pred             EEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444455556788888888888766 99999999999999999865

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.77  E-value=0.00011  Score=55.33  Aligned_cols=42  Identities=24%  Similarity=0.462  Sum_probs=29.0

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+.|......  .+...+.+.+. +.||||+|||||...||...
T Consensus         7 V~~~y~~~~~~--fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~   49 (231)
T COG3840           7 VRFSYGHLPMR--FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFE   49 (231)
T ss_pred             eEEeeCcceEE--EEEeecCCcEEEEECCCCccHHHHHHHHHhcc
Confidence            34444443332  34445566666 99999999999999999765

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=97.77  E-value=4e-05  Score=61.28  Aligned_cols=44  Identities=30%  Similarity=0.619  Sum_probs=35.8

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus         7 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (247)
T TIGR00972         7 LNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMN   51 (247)
T ss_pred             EEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            444444455778888988888777 99999999999999999776

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.77  E-value=4.7e-05  Score=60.67  Aligned_cols=44  Identities=30%  Similarity=0.496  Sum_probs=35.3

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         9 l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (241)
T PRK14250          9 VSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLI   53 (241)
T ss_pred             EEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444445678888888888776 99999999999999999875

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=97.77  E-value=2.2e-05  Score=64.93  Aligned_cols=34  Identities=29%  Similarity=0.588  Sum_probs=30.0

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      +...++|+|+||||||++++.+++.++.+++..+
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D  165 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN  165 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence            3457889999999999999999999999998655

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=97.77  E-value=4.6e-05  Score=64.58  Aligned_cols=45  Identities=24%  Similarity=0.609  Sum_probs=36.5

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus        19 ~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~   64 (375)
T PRK09452         19 GISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE   64 (375)
T ss_pred             EEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4455555555677888989888777 99999999999999999866

>PTZ00301 uridine kinase; Provisional

Probab=97.76  E-value=5.9e-05  Score=58.77  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      |-+.|+||+||||+|+.|++.+
T Consensus         6 IgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          6 IGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEECCCcCCHHHHHHHHHHHH
Confidence            3499999999999999998776

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.76  E-value=4.1e-05  Score=59.89  Aligned_cols=37  Identities=30%  Similarity=0.557  Sum_probs=32.4

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+.+.++ +.||||||||||...++...
T Consensus        18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld   55 (226)
T COG1136          18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLD   55 (226)
T ss_pred             eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            46778899999998888 99999999999999998655

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=97.76  E-value=5e-05  Score=60.89  Aligned_cols=44  Identities=25%  Similarity=0.594  Sum_probs=35.0

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus        12 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (253)
T PRK14242         12 LSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMN   56 (253)
T ss_pred             eEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            344444445778888888888766 99999999999999999764

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=97.76  E-value=4.9e-05  Score=60.45  Aligned_cols=44  Identities=20%  Similarity=0.610  Sum_probs=35.4

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus         7 l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (240)
T PRK09493          7 VSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLE   51 (240)
T ss_pred             EEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444455678888888888777 99999999999999999875

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.76  E-value=2.6e-05  Score=59.67  Aligned_cols=29  Identities=31%  Similarity=0.576  Sum_probs=24.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .++|+||+|+||||+++.++..++.++..
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~~~   32 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQREQTQLLV   32 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence            56699999999999999999987665433

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=97.76  E-value=5.1e-05  Score=59.35  Aligned_cols=36  Identities=31%  Similarity=0.473  Sum_probs=31.6

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.++..+.+.++ |.||+|+|||||++.++..+
T Consensus        17 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   53 (216)
T TIGR00960        17 PALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIE   53 (216)
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4678888888888777 99999999999999999875

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.75  E-value=4.1e-05  Score=61.43  Aligned_cols=46  Identities=33%  Similarity=0.635  Sum_probs=36.5

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...+.....+++.++...++.++ |.||+|+|||||+++++..+.
T Consensus        12 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   58 (254)
T PRK14273         12 NLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND   58 (254)
T ss_pred             eeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            3444444455778888998888777 999999999999999998653

>PLN02200 adenylate kinase family protein

Probab=97.75  E-value=3.2e-05  Score=61.34  Aligned_cols=33  Identities=15%  Similarity=0.307  Sum_probs=26.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      .+++.|+|||||||+|+.+++.++.+  .++.+++
T Consensus        45 ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdl   77 (234)
T PLN02200         45 ITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDL   77 (234)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHH
Confidence            46699999999999999999998764  4555444

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=97.75  E-value=5.2e-05  Score=61.03  Aligned_cols=44  Identities=20%  Similarity=0.450  Sum_probs=36.1

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         8 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   52 (258)
T PRK13548          8 LSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGEL   52 (258)
T ss_pred             EEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444555556788889998888777 99999999999999999875

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=97.75  E-value=5.7e-05  Score=58.02  Aligned_cols=36  Identities=31%  Similarity=0.474  Sum_probs=30.7

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~   63 (225)
                      ...+++.++...++.++ |.||+|+|||||++.++..
T Consensus        20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            45678888888887776 9999999999999999964

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=97.75  E-value=5.1e-05  Score=60.47  Aligned_cols=44  Identities=32%  Similarity=0.574  Sum_probs=35.2

Q ss_pred             eEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.. ...+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         6 l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   51 (242)
T cd03295           6 VTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLI   51 (242)
T ss_pred             EEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4444444 45678888888888777 99999999999999999765

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot)

Probab=97.75  E-value=0.00013  Score=56.14  Aligned_cols=65  Identities=18%  Similarity=0.166  Sum_probs=34.1

Q ss_pred             CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHH
Q psy5910         105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIE  184 (225)
Q Consensus       105 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~  184 (225)
                      .+++++|||+....+.+....      .... ...+.|....            +..  .-++.+|..       +..+|
T Consensus        79 ~~~liviDEa~~~~~~r~~~~------~~~~-~~~~~l~~hR------------h~g--~diiliTQ~-------~~~id  130 (193)
T PF05707_consen   79 KGSLIVIDEAQNFFPSRSWKG------KKVP-EIIEFLAQHR------------HYG--WDIILITQS-------PSQID  130 (193)
T ss_dssp             TT-EEEETTGGGTSB---T-T-----------HHHHGGGGCC------------CTT---EEEEEES--------GGGB-
T ss_pred             CCcEEEEECChhhcCCCcccc------ccch-HHHHHHHHhC------------cCC--cEEEEEeCC-------HHHHh
Confidence            689999999999998864411      0122 2335554321            222  555555555       77999


Q ss_pred             HHHHhhccccccc
Q psy5910         185 NFIINRINQETNF  197 (225)
Q Consensus       185 ~al~~Rf~~~i~~  197 (225)
                      ..+++..+..+.+
T Consensus       131 ~~ir~lve~~~~~  143 (193)
T PF05707_consen  131 KFIRDLVEYHYHC  143 (193)
T ss_dssp             HHHHCCEEEEEEE
T ss_pred             HHHHHHHheEEEE
Confidence            9998865554433

Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.74  E-value=0.00011  Score=59.35  Aligned_cols=78  Identities=22%  Similarity=0.323  Sum_probs=40.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccc--ccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFT--EAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~  116 (225)
                      -|+|+|-||+|||++|+.|+..+   +..+..++...+.  ...|.....++..+..+...... .-....||++|....
T Consensus         3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r-~ls~~~iVI~Dd~nY   81 (270)
T PF08433_consen    3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVER-ALSKDTIVILDDNNY   81 (270)
T ss_dssp             EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHH-HHTT-SEEEE-S---
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHH-hhccCeEEEEeCCch
Confidence            36799999999999999999876   5666666654442  11243333344444444332111 123568999999887


Q ss_pred             hccc
Q psy5910         117 ISKK  120 (225)
Q Consensus       117 l~~~  120 (225)
                      +..-
T Consensus        82 iKg~   85 (270)
T PF08433_consen   82 IKGM   85 (270)
T ss_dssp             SHHH
T ss_pred             HHHH
Confidence            6643

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.74  E-value=4.4e-05  Score=60.65  Aligned_cols=46  Identities=26%  Similarity=0.509  Sum_probs=39.2

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|.+.+.++++++..+.+.++ ++||.|+|||||.|++...+
T Consensus         8 ~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll   54 (254)
T COG1121           8 ENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLL   54 (254)
T ss_pred             eeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            44566676446899999999999888 99999999999999999865

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.74  E-value=5.7e-05  Score=58.71  Aligned_cols=37  Identities=27%  Similarity=0.456  Sum_probs=27.9

Q ss_pred             eCCc-EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc
Q psy5910          39 EKSN-ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS   75 (225)
Q Consensus        39 ~~~~-vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~   75 (225)
                      +.+. ++++||||||||++|..++...   +.+.++++...
T Consensus        10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3344 4499999999999998887544   55678887754

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.74  E-value=4.2e-05  Score=57.96  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=28.5

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHH
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~   62 (225)
                      ..+++.++..+++.++ +.||+|||||||.+.+..
T Consensus         9 ~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238           9 HNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             eeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence            4466778888887776 999999999999999863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=97.74  E-value=5.2e-05  Score=59.33  Aligned_cols=36  Identities=25%  Similarity=0.515  Sum_probs=31.2

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus        19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (218)
T cd03266          19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLL   55 (218)
T ss_pred             eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            5678888888887666 99999999999999999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.74  E-value=0.00025  Score=57.42  Aligned_cols=25  Identities=40%  Similarity=0.862  Sum_probs=22.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .++++.||+|+||||+.+.++..+.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~  136 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS  136 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC
Confidence            4789999999999999999998873

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=97.74  E-value=5.2e-05  Score=63.98  Aligned_cols=45  Identities=27%  Similarity=0.564  Sum_probs=36.5

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus        10 ~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   55 (362)
T TIGR03258        10 HLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFV   55 (362)
T ss_pred             EEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4445555556788888988888777 99999999999999999765

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=97.74  E-value=5.4e-05  Score=63.74  Aligned_cols=45  Identities=22%  Similarity=0.524  Sum_probs=36.5

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus         7 ~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~   52 (353)
T PRK10851          7 NIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLE   52 (353)
T ss_pred             EEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3444455556778888988888777 99999999999999999876

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=97.74  E-value=5e-05  Score=61.12  Aligned_cols=45  Identities=24%  Similarity=0.609  Sum_probs=35.9

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus         9 ~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~   54 (258)
T PRK14241          9 DLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMH   54 (258)
T ss_pred             eEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            3444454456778888888887766 99999999999999999865

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=97.74  E-value=4.5e-05  Score=63.64  Aligned_cols=37  Identities=27%  Similarity=0.501  Sum_probs=33.0

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++....+.++ |+|++|||||||+++|+...
T Consensus        20 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~   57 (330)
T PRK15093         20 VKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT   57 (330)
T ss_pred             EEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence            45788889999988877 99999999999999999876

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.74  E-value=3e-05  Score=58.95  Aligned_cols=44  Identities=23%  Similarity=0.553  Sum_probs=32.8

Q ss_pred             eEecccceE--eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLF--LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~--~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.+..  .+.+.++...++..+ +.|||||||||+.+.+|...
T Consensus         9 ~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~   55 (259)
T COG4525           9 LSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFV   55 (259)
T ss_pred             eEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCc
Confidence            344454443  566777777776655 89999999999999999765

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.74  E-value=6.3e-05  Score=57.17  Aligned_cols=43  Identities=30%  Similarity=0.566  Sum_probs=33.8

Q ss_pred             EecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...|.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus         6 ~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~   49 (180)
T cd03214           6 SVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLL   49 (180)
T ss_pred             EEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            33344445677788888887666 99999999999999999876

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK04040 adenylate kinase; Provisional

Probab=97.74  E-value=3.5e-05  Score=59.02  Aligned_cols=24  Identities=21%  Similarity=0.440  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .++++|+|||||||+++.+++.++
T Consensus         4 ~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          4 VVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHhc
Confidence            567999999999999999999983

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=97.73  E-value=5.5e-05  Score=64.09  Aligned_cols=45  Identities=27%  Similarity=0.629  Sum_probs=36.2

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus         8 ~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~   53 (369)
T PRK11000          8 NVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   53 (369)
T ss_pred             EEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3444455555678888988888776 99999999999999999875

>PRK04182 cytidylate kinase; Provisional

Probab=97.73  E-value=3.5e-05  Score=58.23  Aligned_cols=29  Identities=31%  Similarity=0.536  Sum_probs=25.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .|++.|++||||||+|+.+++.++.+++.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id   30 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVS   30 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence            36799999999999999999999887654

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=97.73  E-value=5.5e-05  Score=60.65  Aligned_cols=44  Identities=23%  Similarity=0.316  Sum_probs=34.8

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus         9 l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   53 (253)
T TIGR02323         9 LSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRL   53 (253)
T ss_pred             eEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444445678888888887766 99999999999999999876

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=97.73  E-value=6.5e-05  Score=57.97  Aligned_cols=43  Identities=26%  Similarity=0.449  Sum_probs=34.7

Q ss_pred             EecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+.....+++.++...++.++ |.||+|+|||||.+.++...
T Consensus         7 ~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   50 (198)
T TIGR01189         7 ACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLL   50 (198)
T ss_pred             EEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            33444455678888888888777 99999999999999999865

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=97.73  E-value=4.8e-05  Score=61.36  Aligned_cols=44  Identities=20%  Similarity=0.567  Sum_probs=35.9

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+..+
T Consensus        10 l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   54 (262)
T PRK09984         10 LAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLI   54 (262)
T ss_pred             EEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence            344445556788889998888777 99999999999999999876

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=97.73  E-value=5.3e-05  Score=60.29  Aligned_cols=44  Identities=25%  Similarity=0.477  Sum_probs=35.3

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++..+++.++ |.||+|+|||||++.|+..+
T Consensus         9 l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~   53 (241)
T PRK10895          9 LAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIV   53 (241)
T ss_pred             cEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            333444455778888888888777 99999999999999999875

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=97.73  E-value=5.4e-05  Score=61.29  Aligned_cols=45  Identities=27%  Similarity=0.515  Sum_probs=36.6

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus        25 nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~   70 (267)
T PRK14237         25 DLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMN   70 (267)
T ss_pred             eEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            4444455556788889999888777 99999999999999999875

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=97.73  E-value=5.3e-05  Score=61.24  Aligned_cols=45  Identities=22%  Similarity=0.336  Sum_probs=36.4

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++....+.++ |.||+|+|||||++.|+...
T Consensus        16 ~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   61 (265)
T PRK10575         16 NVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQ   61 (265)
T ss_pred             eEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence            3444454456788889998888777 99999999999999999765

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=97.72  E-value=5.6e-05  Score=64.15  Aligned_cols=45  Identities=22%  Similarity=0.510  Sum_probs=36.1

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++....+.++ |.||+|||||||.+.|+...
T Consensus        24 ~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~   69 (377)
T PRK11607         24 NLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE   69 (377)
T ss_pred             eEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4444555555677888888888777 99999999999999999775

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.72  E-value=6.3e-05  Score=60.97  Aligned_cols=45  Identities=24%  Similarity=0.535  Sum_probs=36.4

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++....+.++ |.||+|+|||||++.|+...
T Consensus        18 nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   63 (269)
T PRK14259         18 NVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMN   63 (269)
T ss_pred             eEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3444555556788899999888776 99999999999999999764

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=97.72  E-value=5.5e-05  Score=59.60  Aligned_cols=36  Identities=25%  Similarity=0.507  Sum_probs=31.5

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.++..+.+.++ |.||+|+|||||.+.++...
T Consensus        19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   55 (228)
T cd03257          19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLL   55 (228)
T ss_pred             eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5678888888888766 99999999999999999765

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.72  E-value=5.9e-05  Score=61.05  Aligned_cols=45  Identities=22%  Similarity=0.530  Sum_probs=36.0

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++...++.++ |.||+|+|||||++.++...
T Consensus        26 ~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   71 (268)
T PRK14248         26 DLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMN   71 (268)
T ss_pred             EEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence            4444555556788888998888776 99999999999999999853

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=97.72  E-value=6.2e-05  Score=59.62  Aligned_cols=37  Identities=19%  Similarity=0.427  Sum_probs=32.1

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus        22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   59 (233)
T PRK11629         22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLD   59 (233)
T ss_pred             eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            35678888888888776 99999999999999999875

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=97.72  E-value=5.7e-05  Score=60.45  Aligned_cols=45  Identities=31%  Similarity=0.639  Sum_probs=35.5

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++..+++.++ |.||+|+|||||++.|+...
T Consensus         8 ~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~   53 (250)
T PRK14240          8 DLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMN   53 (250)
T ss_pred             EEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            3444444445778888888888776 99999999999999999753

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=97.72  E-value=0.00034  Score=64.36  Aligned_cols=46  Identities=24%  Similarity=0.359  Sum_probs=36.6

Q ss_pred             eeeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+.+.|..  ...+++.++..+++..+ ++||+|+|||||++.++..+
T Consensus       481 ~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~  529 (710)
T TIGR03796       481 RNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLY  529 (710)
T ss_pred             EEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            455555542  45688889999887555 99999999999999999877

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.72  E-value=5.7e-05  Score=60.50  Aligned_cols=45  Identities=27%  Similarity=0.561  Sum_probs=36.3

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus         9 ~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   54 (251)
T PRK14251          9 DVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMN   54 (251)
T ss_pred             eeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence            4445555556778888888887766 99999999999999999875

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.72  E-value=0.00015  Score=55.39  Aligned_cols=26  Identities=42%  Similarity=0.694  Sum_probs=22.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ...+++.||+|+||||++++++..+.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            45778999999999999999998873

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.72  E-value=4.8e-05  Score=57.31  Aligned_cols=36  Identities=28%  Similarity=0.583  Sum_probs=31.0

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.++..+++.++ +.||+|+|||||.+.++...
T Consensus        16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~   52 (171)
T cd03228          16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLY   52 (171)
T ss_pred             ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            4567778888887777 99999999999999999876

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=97.72  E-value=6.4e-05  Score=58.96  Aligned_cols=37  Identities=27%  Similarity=0.496  Sum_probs=31.9

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+.+.++...++.++ |.||+|+|||||.+.|+...
T Consensus        18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~   55 (221)
T TIGR02211        18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLD   55 (221)
T ss_pred             eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            34677888888888777 99999999999999999765

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.72  E-value=6.3e-05  Score=60.24  Aligned_cols=44  Identities=23%  Similarity=0.520  Sum_probs=35.2

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus        11 l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~   55 (251)
T PRK14244         11 LNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMN   55 (251)
T ss_pred             EEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            333444456778888888888777 99999999999999999764

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.71  E-value=6.1e-05  Score=60.25  Aligned_cols=45  Identities=29%  Similarity=0.572  Sum_probs=35.7

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+....
T Consensus         9 l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (249)
T PRK14253          9 LDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND   54 (249)
T ss_pred             cEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            334444455788888988888777 999999999999999997653

>PRK14527 adenylate kinase; Provisional

Probab=97.71  E-value=2.9e-05  Score=59.57  Aligned_cols=28  Identities=25%  Similarity=0.557  Sum_probs=24.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      -++++||||+||||+|+.+++.++...+
T Consensus         8 ~i~i~G~pGsGKsT~a~~La~~~~~~~i   35 (191)
T PRK14527          8 VVIFLGPPGAGKGTQAERLAQELGLKKL   35 (191)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence            5679999999999999999999876543

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.71  E-value=0.0011  Score=49.97  Aligned_cols=31  Identities=26%  Similarity=0.452  Sum_probs=26.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      +|++|++|+|||++|..++...+.+.+++..
T Consensus         2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at   32 (169)
T cd00544           2 ILVTGGARSGKSRFAERLAAELGGPVTYIAT   32 (169)
T ss_pred             EEEECCCCCCHHHHHHHHHHhcCCCeEEEEc
Confidence            5799999999999999998877767776644

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=97.71  E-value=5.3e-05  Score=61.44  Aligned_cols=45  Identities=29%  Similarity=0.644  Sum_probs=35.9

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.|++|+|||||++.|+..+
T Consensus        29 ~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~   74 (271)
T PRK14238         29 NLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMV   74 (271)
T ss_pred             eeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            3444444445678888888888777 99999999999999999875

>PRK11823 DNA repair protein RadA; Provisional

Probab=97.71  E-value=0.00026  Score=61.45  Aligned_cols=75  Identities=19%  Similarity=0.325  Sum_probs=44.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc-----CccCCcH-------HHHHHHHHHhcchhhhhhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA-----GYVGDDV-------ESIIQKLLHECDYDVELAEQ  106 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~-----~~~g~~~-------~~~~~~~~~~~~~~~~~~~~  106 (225)
                      -++++|+||+|||+++..++...   +.++++++..+..+.     .-.|.+.       ...+..+.+.    +....+
T Consensus        82 ~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~----i~~~~~  157 (446)
T PRK11823         82 VVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILAT----IEEEKP  157 (446)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHH----HHhhCC
Confidence            45699999999999999888755   566777776432110     0000000       0001111111    233477


Q ss_pred             CEEEEcchhhhccc
Q psy5910         107 SIIYIDEIDKISKK  120 (225)
Q Consensus       107 ~vl~iDEid~l~~~  120 (225)
                      .+++||++..+...
T Consensus       158 ~lVVIDSIq~l~~~  171 (446)
T PRK11823        158 DLVVIDSIQTMYSP  171 (446)
T ss_pred             CEEEEechhhhccc
Confidence            89999999988653

>PRK10908 cell division protein FtsE; Provisional

Probab=97.71  E-value=6.1e-05  Score=59.19  Aligned_cols=38  Identities=21%  Similarity=0.350  Sum_probs=32.3

Q ss_pred             ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          27 RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        27 ~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ....+++.++....+.++ |.||+|+|||||++.|+...
T Consensus        14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (222)
T PRK10908         14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIE   52 (222)
T ss_pred             CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            345677888888888777 99999999999999999765

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.71  E-value=6e-05  Score=60.31  Aligned_cols=44  Identities=25%  Similarity=0.547  Sum_probs=34.6

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus         9 l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~   53 (250)
T PRK14262          9 FSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMN   53 (250)
T ss_pred             eEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            344444445678888888887766 99999999999999999654

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=97.71  E-value=6.2e-05  Score=60.40  Aligned_cols=45  Identities=27%  Similarity=0.564  Sum_probs=36.3

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus        10 ~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (255)
T PRK11300         10 GLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFY   55 (255)
T ss_pred             eEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCc
Confidence            3444455556788888888888777 99999999999999999775

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=97.71  E-value=5e-05  Score=61.09  Aligned_cols=44  Identities=23%  Similarity=0.346  Sum_probs=35.2

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||++.++..+
T Consensus        12 l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   56 (258)
T PRK11701         12 LTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARL   56 (258)
T ss_pred             eEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444445678888888888777 99999999999999999876

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.71  E-value=3e-05  Score=57.15  Aligned_cols=30  Identities=30%  Similarity=0.556  Sum_probs=24.2

Q ss_pred             EEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          45 LVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      +.||||+||||+|+.||+.++.  ..++.+++
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~l   30 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDL   30 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTS--EEEEHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhcCc--ceechHHH
Confidence            5799999999999999999876  44544443

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.70  E-value=7e-05  Score=60.00  Aligned_cols=45  Identities=31%  Similarity=0.629  Sum_probs=35.7

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++...++.++ |.||+|+|||||++.|+...
T Consensus        10 ~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14255         10 DVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMN   55 (252)
T ss_pred             eEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence            4444555556788888888887666 99999999999999998753

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=97.70  E-value=7.5e-05  Score=57.75  Aligned_cols=43  Identities=28%  Similarity=0.431  Sum_probs=34.6

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~   63 (225)
                      +...+.....+++.++...++.++ |.||+|+|||||.+.++..
T Consensus         6 l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217           6 LHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             EEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCC
Confidence            334444456778888888888666 9999999999999999987

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=97.70  E-value=6.9e-05  Score=61.79  Aligned_cols=45  Identities=24%  Similarity=0.550  Sum_probs=36.9

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|+|||||.+.++..+
T Consensus         9 ~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~   54 (303)
T TIGR01288         9 GVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMI   54 (303)
T ss_pred             eEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445555556788899999988777 99999999999999999865

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=97.70  E-value=7.5e-05  Score=60.32  Aligned_cols=45  Identities=22%  Similarity=0.563  Sum_probs=36.2

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...+.....+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus        15 ~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   60 (264)
T PRK14243         15 NLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLN   60 (264)
T ss_pred             eeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence            4455555556788889998888766 99999999999999999754

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.70  E-value=0.00078  Score=57.84  Aligned_cols=35  Identities=34%  Similarity=0.416  Sum_probs=28.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      -++|+|++|+||||++..+|..+   |..+..+++...
T Consensus       102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~  139 (429)
T TIGR01425       102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF  139 (429)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence            45699999999999999998877   666777777543

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.70  E-value=5e-05  Score=57.59  Aligned_cols=36  Identities=25%  Similarity=0.481  Sum_probs=30.8

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.++..+++.++ +.||+|+|||||++.++...
T Consensus        16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~   52 (178)
T cd03247          16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDL   52 (178)
T ss_pred             cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            4567778888887666 99999999999999999876

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK14526 adenylate kinase; Provisional

Probab=97.69  E-value=4.6e-05  Score=59.43  Aligned_cols=27  Identities=30%  Similarity=0.571  Sum_probs=23.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPI   68 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~   68 (225)
                      +++|+|||||||||+|+.+++.++.+.
T Consensus         2 ~i~l~G~pGsGKsT~a~~La~~~~~~~   28 (211)
T PRK14526          2 KLVFLGPPGSGKGTIAKILSNELNYYH   28 (211)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCce
Confidence            478999999999999999999887654

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=97.69  E-value=6.9e-05  Score=60.27  Aligned_cols=44  Identities=16%  Similarity=0.424  Sum_probs=35.9

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...+.....+++.++..+++.++ |.||+|+|||||++.++...
T Consensus        11 l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~   55 (257)
T PRK10619         11 LHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLE   55 (257)
T ss_pred             eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            444444456778888988888777 99999999999999999876

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.69  E-value=6.2e-05  Score=60.28  Aligned_cols=46  Identities=30%  Similarity=0.689  Sum_probs=36.6

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...|.....+++.++...++.++ |.||+|+|||||++.|+..+.
T Consensus         9 ~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14249          9 GVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND   55 (251)
T ss_pred             EEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            3444454555788888988888777 999999999999999998763

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=97.69  E-value=6.4e-05  Score=60.92  Aligned_cols=44  Identities=20%  Similarity=0.404  Sum_probs=35.4

Q ss_pred             eEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          21 VYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        21 l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...|.....+++.++..+.+.++ |.||+|+|||||++.|+...
T Consensus        13 l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   57 (269)
T PRK11831         13 VSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQI   57 (269)
T ss_pred             eEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            344444455678888988888766 99999999999999999775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	225
3hte_A	363	Crystal Structure Of Nucleotide-Free Hexameric Clpx		3e-60
3hws_A	363	Crystal Structure Of Nucleotide-Bound Hexameric Clp		4e-60
1um8_A	376	Crystal Structure Of Helicobacter Pylori Clpx Lengt		8e-51
1ofh_A	310	Asymmetric Complex Between Hslv And I-domain Delete		6e-35
1g3i_A	444	Crystal Structure Of The Hsluv Protease-Chaperone C		3e-21
1g3i_A	444	Crystal Structure Of The Hsluv Protease-Chaperone C		5e-08
1g4a_E	443	Crystal Structures Of The Hslvu Peptidase-Atpase Co		1e-20
1g4a_E	443	Crystal Structures Of The Hslvu Peptidase-Atpase Co		5e-08
1do2_A	442	Trigonal Crystal Form Of Heat Shock Locus U (Hslu)		1e-20
1do2_A	442	Trigonal Crystal Form Of Heat Shock Locus U (Hslu)		5e-08
1e94_E	449	Hslv-Hslu From E.Coli Length = 449		1e-20
1e94_E	449	Hslv-Hslu From E.Coli Length = 449		5e-08
1im2_A	444	Hslu, Haemophilus Influenzae, Selenomethionine Vari		2e-20
1im2_A	444	Hslu, Haemophilus Influenzae, Selenomethionine Vari		4e-08
2qz4_A	262	Human Paraplegin, Aaa Domain In Complex With Adp Le		4e-08
2r62_A	268	Crystal Structure Of Helicobacter Pylori Atp Depend		1e-07
3h4m_A	285	Aaa Atpase Domain Of The Proteasome- Activating Nuc		2e-06
1lv7_A	257	Crystal Structure Of The Aaa Domain Of Ftsh Length		7e-06
4b4t_K	428	Near-Atomic Resolution Structural Model Of The Yeas		9e-06
1iy2_A	278	Crystal Structure Of The Ftsh Atpase Domain From Th		4e-05
2ce7_A	476	Edta Treated Length = 476		5e-05
4eiw_A	508	Whole Cytosolic Region Of Atp-Dependent Metalloprot		6e-05
1ixz_A	254	Crystal Structure Of The Ftsh Atpase Domain From Th		6e-05
2dhr_A	499	Whole Cytosolic Region Of Atp-Dependent Metalloprot		7e-05
4b4t_L	437	Near-Atomic Resolution Structural Model Of The Yeas		8e-05
3b9p_A	297	Spastin Length = 297		1e-04
3kds_E	465	Apo-ftsh Crystal Structure Length = 465		2e-04
3d8b_A	357	Crystal Structure Of Human Fidgetin-Like Protein 1		3e-04
3vfd_A	389	Human Spastin Aaa Domain Length = 389		4e-04
4b4t_J	405	Near-Atomic Resolution Structural Model Of The Yeas		8e-04
1ixr_C	312	Ruva-Ruvb Complex Length = 312		8e-04
1ixs_B	318	Structure Of Ruvb Complexed With Ruva Domain Iii Le		9e-04
1hqc_A	324	Structure Of Ruvb From Thermus Thermophilus Hb8 Len		9e-04

>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx Length = 363

Iteration: 1
 Score =  227 bits (579), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 163/231 (70%), Gaps = 12/231 (5%)
Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKN-IYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD ++IGQ + KK+++V VYNHYKRL    + N + L KSNILL+GPTG GKTL+ +TLA
Sbjct: 13  LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           ++++VP  + DAT+ TEAGYVG+DVE+IIQKLL +CDYDV+ A++ I+YID+IDKIS+K+
Sbjct: 73  RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS 132
Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   ++     +K+P Q  +   +DT+ ILFI GGAF
Sbjct: 133 DNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ--EFLQVDTSKILFICGGAF 190
Query: 181 SGIENFIINRINQET--NFLEKLNNNYN------LICETNTEDLINFGIIP 223
           +G++  I +R+   +   F   +    +      L+ +   EDLI FG+IP
Sbjct: 191 AGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 241

>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx Length = 363

Iteration: 1
 Score =  227 bits (579), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 116/231 (50%), Positives = 163/231 (70%), Gaps = 12/231 (5%)
Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKN-IYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD ++IGQ + KK+++V VYNHYKRL    + N + L KSNILL+GPTG GKTL+ +TLA
Sbjct: 13  LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           ++++VP  + DAT+ TEAGYVG+DVE+IIQKLL +CDYDV+ A++ I+YID+IDKIS+K+
Sbjct: 73  RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS 132
Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   ++     +K+P Q  +   +DT+ ILFI GGAF
Sbjct: 133 DNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ--EFLQVDTSKILFICGGAF 190
Query: 181 SGIENFIINRINQET--NFLEKLNNNYN------LICETNTEDLINFGIIP 223
           +G++  I +R+   +   F   +    +      L+ +   EDLI FG+IP
Sbjct: 191 AGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 241

>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx Length = 376

Iteration: 1
 Score =  196 bits (498), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 114/246 (46%), Positives = 159/246 (64%), Gaps = 27/246 (10%)
Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFL---LKSKN-------------IYLEKSNILLV 46
           LD ++IGQ + KK+ SV VYNHYKRL     LK ++             + L KSNILL+
Sbjct: 19  LDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLI 78
Query: 47  GPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ 106
           GPTG GKTLM +TLAK +++PI + DATS TEAGYVG+DVE+I+ +LL   D++V+ A++
Sbjct: 79  GPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQK 138
Query: 107 SIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF 165
            I++IDEIDKIS+ ++  S  +DVSGEGVQQ+LLK++EG  ++I     +K+P  N    
Sbjct: 139 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGN--FI 196
Query: 166 NIDTTNILFIAGGAFSGIENFIINRINQETNFL----EKLNNNYN--LICETNTEDLINF 219
            IDT++ILFI  GAF G+   I  R  Q  N L    EK++      ++    T DL+ +
Sbjct: 197 QIDTSDILFICAGAFDGLAEIIKKRTTQ--NVLGFTQEKMSKKEQEAILHLVQTHDLVTY 254
Query: 220 GIIPVL 225
           G+IP L
Sbjct: 255 GLIPEL 260

>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu (h. Influenzae) Length = 310

Iteration: 1
 Score =  143 bits (361), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 80/180 (44%), Positives = 111/180 (61%), Gaps = 15/180 (8%)
Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ + K+ V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 12  ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 71
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQS-IIYIDEIDKISKK 120
           K+ N P I V+AT FTE GYVG +V+SII+ L       ++  EQ+ I++IDEIDKI KK
Sbjct: 72  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 131
Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
            +  SG DVS EGVQ+ LL L+EG  +S                  + T +ILFIA GAF
Sbjct: 132 GE-YSGADVSREGVQRDLLPLVEGSTVSTKH-------------GMVKTDHILFIASGAF 177

>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 444

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 64/92 (69%)
Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ + K+ V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 12  ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 71
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKL 93
           K+ N P I V+AT FTE GYVG +V+SII+ L
Sbjct: 72  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103

>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex Length = 444

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 14/73 (19%)
Query: 108 IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNI 167
           I++IDEIDKI KK +  SG DVS EGVQ+ LL L+EG  +S                  +
Sbjct: 253 IVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKH-------------GMV 298
Query: 168 DTTNILFIAGGAF 180
            T +ILFIA GAF
Sbjct: 299 KTDHILFIASGAF 311

>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism Length = 443

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 63/92 (68%)
Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ   K+ V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 12  ELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLA 71
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKL 93
           K+ N P I V+AT FTE GYVG +V+SII+ L
Sbjct: 72  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103

>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex Reveal An Atp-Dependent Proteolysis Mechanism Length = 443

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 14/76 (18%)
Query: 105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164
           +  I++IDEIDKI K+ +  SG DVS EGVQ+ LL L+EG  +S                
Sbjct: 249 QHGIVFIDEIDKICKRGES-SGPDVSREGVQRDLLPLVEGCTVSTKH------------- 294
Query: 165 FNIDTTNILFIAGGAF 180
             + T +ILFIA GAF
Sbjct: 295 GMVKTDHILFIASGAF 310

>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli Length = 442

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 63/92 (68%)
Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ   K+ V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 11  ELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLA 70
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKL 93
           K+ N P I V+AT FTE GYVG +V+SII+ L
Sbjct: 71  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 102

>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From Escherichia Coli Length = 442

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 14/76 (18%)
Query: 105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164
           +  I++IDEIDKI K+ +  SG DVS EGVQ+ LL L+EG  +S                
Sbjct: 248 QHGIVFIDEIDKICKRGES-SGPDVSREGVQRDLLPLVEGCTVSTKH------------- 293
Query: 165 FNIDTTNILFIAGGAF 180
             + T +ILFIA GAF
Sbjct: 294 GMVKTDHILFIASGAF 309

>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli Length = 449

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 63/92 (68%)
Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ   K+ V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 18  ELDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRLA 77
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKL 93
           K+ N P I V+AT FTE GYVG +V+SII+ L
Sbjct: 78  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 109

>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli Length = 449

Iteration: 1
 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 14/76 (18%)
Query: 105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164
           +  I++IDEIDKI K+ +  SG DVS EGVQ+ LL L+EG  +S                
Sbjct: 255 QHGIVFIDEIDKICKRGES-SGPDVSREGVQRDLLPLVEGCTVSTKH------------- 300
Query: 165 FNIDTTNILFIAGGAF 180
             + T +ILFIA GAF
Sbjct: 301 GMVKTDHILFIASGAF 316

>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant Length = 444

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/92 (47%), Positives = 62/92 (67%)
Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ + K+ V++ + N ++R  L +     +   NIL +GPTG GKT + + LA
Sbjct: 12  ELDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRLA 71
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKL 93
           K+ N P I V+AT FTE GYVG +V+SII+ L
Sbjct: 72  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103

>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant Length = 444

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/73 (46%), Positives = 42/73 (57%), Gaps = 14/73 (19%)
Query: 108 IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNI 167
           I++IDEIDKI KK +  SG DVS EGVQ+ LL L+EG  +S                  +
Sbjct: 253 IVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKH-------------GXV 298
Query: 168 DTTNILFIAGGAF 180
            T +ILFIA GAF
Sbjct: 299 KTDHILFIASGAF 311

>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp Length = 262

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/119 (31%), Positives = 54/119 (45%), Gaps = 18/119 (15%)
Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLE-----KSNILLVGPTGCGKTLMVKTLA 61
           + G HE K  + V  +  Y     LKS   +L+         LL+GP GCGKTL+ K +A
Sbjct: 8   VAGMHEAK--LEVREFVDY-----LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVA 60
Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
               VP + +    F E   +G    + ++ L  E           I+YIDEID + KK
Sbjct: 61  TEAQVPFLAMAGAEFVE--VIGGLGAARVRSLFKEARARA----PCIVYIDEIDAVGKK 113

>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent Protease, Ftsh Length = 268

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LLVGP G GKTL+ K +A   +VP   +  +SF E  +VG    S ++ L         
Sbjct: 47  VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM-FVGLGA-SRVRDLFETAKKQA- 103
Query: 103 LAEQSIIYIDEIDKISKKT---DVVSGKDVSGEGVQQSLLKL 141
               SII+IDEID I K      VVSG D   + + Q L ++
Sbjct: 104 ---PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEM 142

>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating Nucleotidase Length = 285

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/105 (36%), Positives = 56/105 (53%), Gaps = 14/105 (13%)
Query: 41  SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESI--IQKLLHECD 98
             ILL GP G GKTL+ K +A   N   I V  +   +  ++G+    +  I KL  E  
Sbjct: 52  KGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGEGASLVKDIFKLAKE-- 108
Query: 99  YDVELAEQSIIYIDEIDKI-SKKTDVVSGKDVSGEGVQQSLLKLI 142
                   SII+IDEID I +K+TD ++G D     VQ++L++L+
Sbjct: 109 -----KAPSIIFIDEIDAIAAKRTDALTGGDRE---VQRTLMQLL 145

>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh Length = 257

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            +L+VGP G GKTL+ K +A    VP   +  + F E  +VG    S ++ +  +     
Sbjct: 47  GVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM-FVGVGA-SRVRDMFEQA---- 100
Query: 102 ELAEQSIIYIDEIDKISKK 120
           + A   II+IDEID + ++
Sbjct: 101 KKAAPCIIFIDEIDAVGRQ 119

>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 428

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESI--IQKLLHECDYD 100
           +LL GP G GKT++VK +A       I V+ + F    Y+G+    +  + +L  E    
Sbjct: 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHK-YLGEGPRMVRDVFRLAREN--- 264
Query: 101 VELAEQSIIYIDEIDKIS-KKTDVVSGKDVSGEGVQQSLLKLIEGVNLS 148
                 SII+IDE+D I+ K+ D  +G D   + +   LL  ++G + S
Sbjct: 265 ----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS 309

>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 278

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            +LLVGP G GKT + + +A    VP I    + F E  +VG  V +   + L E     
Sbjct: 75  GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG--VGAARVRDLFET---A 128
Query: 102 ELAEQSIIYIDEIDKISKK--TDVVSGKDVSGEGVQQSLLKL 141
           +     I++IDEID + +K  + V  G D   + + Q L+++
Sbjct: 129 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170

>pdb|2CE7|A Chain A, Edta Treated Length = 476

Iteration: 1
 Score = 44.3 bits (103), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            ILLVGP G GKTL+ + +A   NVP   +  + F E  +VG    + ++ L  +     
Sbjct: 51  GILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL-FVGVGA-ARVRDLFAQAKAHA 108
Query: 102 ELAEQSIIYIDEIDKISK 119
                 I++IDEID + +
Sbjct: 109 ----PCIVFIDEIDAVGR 122

>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 508

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            +LLVGP G GKT + + +A    VP I    + F E  +VG  V +   + L E     
Sbjct: 75  GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG--VGAARVRDLFET---A 128
Query: 102 ELAEQSIIYIDEIDKISKK--TDVVSGKDVSGEGVQQSLLKL 141
           +     I++IDEID + +K  + V  G D   + + Q L+++
Sbjct: 129 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 170

>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus Thermophilus Length = 254

Iteration: 1
 Score = 43.9 bits (102), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            +LLVGP G GKT + + +A    VP I    + F E  +VG  V +   + L E     
Sbjct: 51  GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG--VGAARVRDLFET---A 104
Query: 102 ELAEQSIIYIDEIDKISKK--TDVVSGKDVSGEGVQQSLLKL 141
           +     I++IDEID + +K  + V  G D   + + Q L+++
Sbjct: 105 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 146

>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease Ftsh (G399l) Length = 499

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            +LLVGP G GKT + + +A    VP I    + F E  +VG  V +   + L E     
Sbjct: 66  GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM-FVG--VGAARVRDLFET---A 119
Query: 102 ELAEQSIIYIDEIDKISKK--TDVVSGKDVSGEGVQQSLLKL 141
           +     I++IDEID + +K  + V  G D   + + Q L+++
Sbjct: 120 KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEM 161

>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 437

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 50/100 (50%), Gaps = 8/100 (8%)
Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKTL+ K +A  I    I   A+   +  Y+G+    I +   +  ++   
Sbjct: 218 VLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK-YIGESARIIREMFAYAKEH--- 273
Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLI 142
             E  II++DE+D I  +     G     E +Q++L++L+
Sbjct: 274 --EPCIIFMDEVDAIGGRR-FSEGTSADRE-IQRTLMELL 309

>pdb|3B9P|A Chain A, Spastin Length = 297

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKTL+ + +A   +   + + A S T + YVGD  E +++ L     +   
Sbjct: 57  LLLFGPPGNGKTLLARAVATECSATFLNISAASLT-SKYVGDG-EKLVRALFAVARH--- 111
Query: 103 LAEQSIIYIDEID 115
             + SII+IDE+D
Sbjct: 112 -MQPSIIFIDEVD 123

>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure Length = 465

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            ILLVGP G G TL+ + +A   NVP   +  + F E  +VG    + ++ L  +     
Sbjct: 51  GILLVGPPGTGATLLARAVAGEANVPFFHISGSDFVEL-FVGVGA-ARVRDLFAQAKAHA 108
Query: 102 ELAEQSIIYIDEIDKISK 119
                 I++IDEID + +
Sbjct: 109 ----PCIVFIDEIDAVGR 122

>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In Complex With Adp Length = 357

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 12/109 (11%)
Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            ILL GP G GKTL+ K +A         + A+S T + +VG+  E +++ L     + V
Sbjct: 119 GILLFGPPGTGKTLIGKCIASQSGATFFSISASSLT-SKWVGEG-EKMVRAL-----FAV 171
Query: 102 ELAEQ-SIIYIDEIDK-ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS 148
              +Q ++I+IDEID  +S++ D   G+  S   ++   L  ++G   S
Sbjct: 172 ARCQQPAVIFIDEIDSLLSQRGD---GEHESSRRIKTEFLVQLDGATTS 217

>pdb|3VFD|A Chain A, Human Spastin Aaa Domain Length = 389

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKT++ K +A   N     + A S T + YVG+  E +++ L        E
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLT-SKYVGEG-EKLVRALFAVAR---E 205
Query: 103 LAEQSIIYIDEIDKI 117
           L + SII+ID++D +
Sbjct: 206 L-QPSIIFIDQVDSL 219

>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s Proteasome Length = 405

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 39  EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECD 98
           +   ++L GP G GKTL+ + +A   +   I V      +  Y+G+       +++ E  
Sbjct: 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK-YIGEG-----SRMVRELF 234
Query: 99  YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLI 142
                   SII++DEID I   +  V G       VQ+++L+L+
Sbjct: 235 VMAREHAPSIIFMDEIDSIG--STRVEGSGGGDSEVQRTMLELL 276

>pdb|1IXR|C Chain C, Ruva-Ruvb Complex Length = 312

Iteration: 1
 Score = 40.4 bits (93), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 22/101 (21%)
Query: 31  LKSK-NIYLEKS--------NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81
           LK K  +YLE +        ++LL GP G GKT +   +A  + V + V    +  + G 
Sbjct: 20  LKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG- 78
Query: 82  VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTD 122
              D+ +I+   L E D         I++IDEI ++S++ +
Sbjct: 79  ---DLAAILANSLEEGD---------ILFIDEIHRLSRQAE 107

>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii Length = 318

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 22/101 (21%)
Query: 31  LKSK-NIYLEKS--------NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81
           LK K  +YLE +        ++LL GP G GKT +   +A  + V + V    +  + G 
Sbjct: 20  LKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG- 78
Query: 82  VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTD 122
              D+ +I+   L E D         I++IDEI ++S++ +
Sbjct: 79  ---DLAAILANSLEEGD---------ILFIDEIHRLSRQAE 107

>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8 Length = 324

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 49/101 (48%), Gaps = 22/101 (21%)
Query: 31  LKSK-NIYLEKS--------NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81
           LK K  +YLE +        ++LL GP G GKT +   +A  + V + V    +  + G 
Sbjct: 20  LKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPG- 78
Query: 82  VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTD 122
              D+ +I+   L E D         I++IDEI ++S++ +
Sbjct: 79  ---DLAAILANSLEEGD---------ILFIDEIHRLSRQAE 107

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	225
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	1e-103
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	1e-100
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	2e-61
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	3e-26
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	2e-10
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	8e-14
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	7e-13
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	6e-07
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	2e-12
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	7e-11
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	1e-08
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	4e-08
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	7e-08
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	1e-07
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	3e-06
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	5e-06
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	1e-05
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	2e-05
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	2e-05
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	2e-05
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	6e-05
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	8e-05
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	1e-04
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	1e-04
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	1e-04
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	1e-04
2r44_A	331	Uncharacterized protein; putative ATPase, structur	1e-04
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	1e-04
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	1e-04
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	3e-04
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	7e-04
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	4e-04
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	5e-04
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	8e-04

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A Length = 363

 Score =  302 bits (775), Expect = e-103
 Identities = 115/231 (49%), Positives = 160/231 (69%), Gaps = 12/231 (5%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKN-IYLEKSNILLVGPTGCGKTLMVKTLA 61
           LD ++IGQ + KK+++V VYNHYKRL    + N + L KSNILL+GPTG GKTL+ +TLA
Sbjct: 13  LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLA 72

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT 121
           ++++VP  + DAT+ TEAGYVG+DVE+IIQKLL +CDYDV+ A++ I+YID+IDKIS+K+
Sbjct: 73  RLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKS 132

Query: 122 DVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
           D  S  +DVSGEGVQQ+LLKLIEG   ++     +K+P Q  +   +DT+ ILFI GGAF
Sbjct: 133 DNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ--EFLQVDTSKILFICGGAF 190

Query: 181 SGIENFIINRI--------NQETNFLEKLNNNYNLICETNTEDLINFGIIP 223
           +G++  I +R+                   +   L+ +   EDLI FG+IP
Sbjct: 191 AGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIP 241

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 Length = 376

 Score =  296 bits (759), Expect = e-100
 Identities = 106/242 (43%), Positives = 147/242 (60%), Gaps = 23/242 (9%)

Query: 3   LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIY----------------LEKSNILLV 46
           LD ++IGQ + KK+ SV VYNHYKRL   +                     L KSNILL+
Sbjct: 19  LDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLI 78

Query: 47  GPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ 106
           GPTG GKTLM +TLAK +++PI + DATS TEAGYVG+DVE+I+ +LL   D++V+ A++
Sbjct: 79  GPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQK 138

Query: 107 SIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF 165
            I++IDEIDKIS+ ++  S  +DVSGEGVQQ+LLK++EG  ++I     +K+P       
Sbjct: 139 GIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEG--NFI 196

Query: 166 NIDTTNILFIAGGAFSGIENFIINRINQET----NFLEKLNNNYNLICETNTEDLINFGI 221
            IDT++ILFI  GAF G+   I  R  Q                 ++    T DL+ +G+
Sbjct: 197 QIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGL 256

Query: 222 IP 223
           IP
Sbjct: 257 IP 258

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* Length = 310

 Score =  193 bits (492), Expect = 2e-61
 Identities = 80/181 (44%), Positives = 114/181 (62%), Gaps = 15/181 (8%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ + K+ V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 12  ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 71

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQS-IIYIDEIDKISKK 120
           K+ N P I V+AT FTE GYVG +V+SII+ L       ++  EQ+ I++IDEIDKI KK
Sbjct: 72  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 131

Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
            +  SG DVS EGVQ+ LL L+EG     ++++ K           + T +ILFIA GAF
Sbjct: 132 GE-YSGADVSREGVQRDLLPLVEG-----STVSTKHGM--------VKTDHILFIASGAF 177

Query: 181 S 181
            
Sbjct: 178 Q 178

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Length = 444

 Score =  103 bits (260), Expect = 3e-26
 Identities = 45/109 (41%), Positives = 70/109 (64%), Gaps = 14/109 (12%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS--NILLVGPTGCGKTLMVKT 59
           ELD+HIIGQ + K+ V++ + N ++R+ L   + +  E +  NIL++GPTG GKT + + 
Sbjct: 12  ELDQHIIGQADAKRAVAIALRNRWRRMQL--QEPLRHEVTPKNILMIGPTGVGKTEIARR 69

Query: 60  LAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSI 108
           LAK+ N P I V+AT FTE GYVG +V+SII+          +L + ++
Sbjct: 70  LAKLANAPFIKVEATKFTEVGYVGKEVDSIIR----------DLTDSAM 108

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* Length = 444

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 37/81 (45%), Positives = 47/81 (58%), Gaps = 15/81 (18%)

Query: 101 VELAEQ-SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159
           ++  EQ  I++IDEIDKI KK +  SG DVS EGVQ+ LL L+EG  +S      K    
Sbjct: 245 IDAVEQNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVST-----KHGM- 297

Query: 160 QNPQVFNIDTTNILFIAGGAF 180
                  + T +ILFIA GAF
Sbjct: 298 -------VKTDHILFIASGAF 311

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A Length = 293

 Score = 67.9 bits (166), Expect = 8e-14
 Identities = 24/129 (18%), Positives = 57/129 (44%), Gaps = 4/129 (3%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           + + G  G GK+   + + + + +  I++ A    E+G  G+    +I++   E    + 
Sbjct: 39  LGIWGGKGQGKSFQCELVFRKMGINPIMMSAGEL-ESGNAGEP-AKLIRQRYREAAEIIR 96

Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162
                 ++I+++D  + +    +   V+ + V  +L+ + +  N +   L    N  +N 
Sbjct: 97  KGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD--NPTNVQLPGMYNKQENA 154

Query: 163 QVFNIDTTN 171
           +V  I T N
Sbjct: 155 RVPIIVTGN 163

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* Length = 272

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 20/129 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP   GKT +   +A+  N P I + +      G+        ++K+      D  
Sbjct: 67  VLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMI-GFSETAKCQAMKKIFD----DAY 121

Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162
            ++ S + +D+I+++     +  G   S   +Q  LL L+            KK P Q  
Sbjct: 122 KSQLSCVVVDDIERLLDYVPI--GPRFSNLVLQA-LLVLL------------KKAPPQGR 166

Query: 163 QVFNIDTTN 171
           ++  I TT+
Sbjct: 167 KLLIIGTTS 175

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* 2pjh_B Length = 489

 Score = 60.2 bits (146), Expect = 7e-11
 Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 27/132 (20%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           ILL GP G GKTL+ + +A        +++      +   G+  ES ++K         E
Sbjct: 241 ILLYGPPGTGKTLIARAVANETGAFFFLINGPEIM-SKLAGES-ESNLRKAF-------E 291

Query: 103 LAEQ---SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS 159
            AE+   +II+IDE+D I+ K +   G +V    V Q LL L++G+              
Sbjct: 292 EAEKNAPAIIFIDELDAIAPKREKTHG-EVERRIVSQ-LLTLMDGLK------------- 336

Query: 160 QNPQVFNIDTTN 171
           Q   V  +  TN
Sbjct: 337 QRAHVIVMAATN 348

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} Length = 285

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 37/104 (35%), Positives = 59/104 (56%), Gaps = 16/104 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           ILL GP G GKTL+ K +A   N   I V  +   +  ++G+        L+ +     +
Sbjct: 54  ILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKK-FIGEG-----ASLVKDI---FK 104

Query: 103 LAEQ---SIIYIDEIDKI-SKKTDVVSGKDVSGEGVQQSLLKLI 142
           LA++   SII+IDEID I +K+TD ++G D     VQ++L++L+
Sbjct: 105 LAKEKAPSIIFIDEIDAIAAKRTDALTGGDRE---VQRTLMQLL 145

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} Length = 389

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKT++ K +A   N     + A S T   YVG+  E +++ L         
Sbjct: 151 LLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS-KYVGEG-EKLVRALF-------A 201

Query: 103 LAEQ---SIIYIDEIDKI 117
           +A +   SII+ID++D +
Sbjct: 202 VARELQPSIIFIDQVDSL 219

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} Length = 297

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP G GKTL+ + +A   +   + + A S T   YVGD  E +++ L         
Sbjct: 57  LLLFGPPGNGKTLLARAVATECSATFLNISAASLTS-KYVGDG-EKLVRALF-------A 107

Query: 103 LAEQ---SIIYIDEIDKI 117
           +A     SII+IDE+D +
Sbjct: 108 VARHMQPSIIFIDEVDSL 125

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} Length = 357

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 12/78 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           ILL GP G GKTL+ K +A         + A+S T   +VG+  E +++ L         
Sbjct: 120 ILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGEG-EKMVRALF-------A 170

Query: 103 LAEQ---SIIYIDEIDKI 117
           +A     ++I+IDEID +
Sbjct: 171 VARCQQPAVIFIDEIDSL 188

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C Length = 322

 Score = 45.8 bits (109), Expect = 3e-06
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           ILL GP G GK+ + K +A   N     V ++    + ++G+  E ++++L         
Sbjct: 54  ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLF-------A 104

Query: 103 LAEQ---SIIYIDEIDKI 117
           +A +   SII+ID++D +
Sbjct: 105 MARENKPSIIFIDQVDAL 122

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322

 Score = 45.1 bits (107), Expect = 5e-06
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 13/79 (16%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPI-IVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
           ILL GP G GK+ + K +A   N      + ++    + ++G+  E +++ L        
Sbjct: 48  ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV-SKWLGES-EKLVKNLF------- 98

Query: 102 ELAEQ---SIIYIDEIDKI 117
           +LA +   SII+IDEID +
Sbjct: 99  QLARENKPSIIFIDEIDSL 117

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* Length = 355

 Score = 44.4 bits (105), Expect = 1e-05
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 12/78 (15%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           ILL GP G GK+ + K +A   N     V ++    + ++G+  E ++++L         
Sbjct: 87  ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLV-SKWMGES-EKLVKQLF-------A 137

Query: 103 LAEQ---SIIYIDEIDKI 117
           +A +   SII+ID++D +
Sbjct: 138 MARENKPSIIFIDQVDAL 155

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} Length = 301

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 35/150 (23%), Positives = 53/150 (35%), Gaps = 60/150 (40%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAG--------------YVGD---D 85
           +L  GP GCGKTL+ K +A                E                + G+   +
Sbjct: 52  VLFYGPPGCGKTLLAKAIA---------------NECQANFISIKGPELLTMWFGESEAN 96

Query: 86  VESIIQKLLHECDYDVELAEQS---IIYIDEIDKISKKTDVVSGKDVS-GEGVQQSLLKL 141
           V  I  K           A Q+   +++ DE+D I+K      G      + V   +L  
Sbjct: 97  VREIFDK-----------ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE 145

Query: 142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTN 171
           ++G++        KKN      VF I  TN
Sbjct: 146 MDGMS-------TKKN------VFIIGATN 162

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} Length = 262

 Score = 43.4 bits (103), Expect = 2e-05
 Identities = 28/90 (31%), Positives = 37/90 (41%), Gaps = 30/90 (33%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE------AGYVGDDVESIIQKLLHE 96
            LL+GP GCGKTL+ K +A    VP + +    F E      A  V              
Sbjct: 42  ALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRS------------ 89

Query: 97  CDYDVELAEQ------SIIYIDEIDKISKK 120
                 L ++       I+YIDEID + KK
Sbjct: 90  ------LFKEARARAPCIVYIDEIDAVGKK 113

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A Length = 444

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 13/79 (16%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPI-IVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
           ILL GP G GK+ + K +A   N      + ++    + ++G+  E +++ L        
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV-SKWLGES-EKLVKNLF------- 220

Query: 102 ELAEQ---SIIYIDEIDKI 117
           +LA +   SII+IDEID +
Sbjct: 221 QLARENKPSIIFIDEIDSL 239

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* Length = 268

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 32/90 (35%), Positives = 39/90 (43%), Gaps = 30/90 (33%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE------AGYVGDDVESIIQKLLHE 96
           +LLVGP G GKTL+ K +A   +VP   +  +SF E      A  V D            
Sbjct: 47  VLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRD------------ 94

Query: 97  CDYDVELAEQ------SIIYIDEIDKISKK 120
                 L E       SII+IDEID I K 
Sbjct: 95  ------LFETAKKQAPSIIFIDEIDAIGKS 118

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 4e-05
 Identities = 27/140 (19%), Positives = 57/140 (40%), Gaps = 18/140 (12%)

Query: 83  GDDVESIIQKLLHECD-YDVELAEQSIIYIDEIDKISKKTDVVSGKDV-------SGEGV 134
            D +       +   D  DV+   +SI+  +EID I    D VSG            E +
Sbjct: 19  KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEM 78

Query: 135 QQSLLKLIEGVNLS--ITSLA-EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINR- 190
            Q  ++ +  +N    ++ +  E++ PS   +++ I+  + L+     F+    + ++R 
Sbjct: 79  VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY-IEQRDRLYNDNQVFA---KYNVSRL 134

Query: 191 --INQETNFLEKLNNNYNLI 208
               +    L +L    N++
Sbjct: 135 QPYLKLRQALLELRPAKNVL 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 7e-05
 Identities = 35/254 (13%), Positives = 70/254 (27%), Gaps = 93/254 (36%)

Query: 41  SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY---VG-----DDVESIIQK 92
            N+L+ G  G GKT +   +    +  +            +   +      + V  ++QK
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCL--SYKVQ----CKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 93  LLHECDYD-VELAEQSIIYIDEIDKISKK------------------------------- 120
           LL++ D +    ++ S      I  I  +                               
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 121 -------------TDVVSG---KDVSGEGVQQSLLK------LIEGVNLSITSLAEKKNP 158
                        TD +S      +S +    +L        L++ ++     L     P
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-----P 319

Query: 159 SQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDL-- 216
            +      + TTN   +     S I   I + +    N+     +    I E++   L  
Sbjct: 320 RE------VLTTNPRRL-----SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 217 -------INFGIIP 223
                      + P
Sbjct: 369 AEYRKMFDRLSVFP 382

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 Length = 257

 Score = 41.9 bits (99), Expect = 6e-05
 Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 30/85 (35%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE------AGYVGDDVESIIQKLLHE 96
           +L+VGP G GKTL+ K +A    VP   +  + F E      A  V D            
Sbjct: 48  VLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRD------------ 95

Query: 97  CDYDVELAEQS------IIYIDEID 115
                 + EQ+      II+IDEID
Sbjct: 96  ------MFEQAKKAAPCIIFIDEID 114

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 Length = 278

 Score = 41.6 bits (98), Expect = 8e-05
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 30/85 (35%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE------AGYVGDDVESIIQKLLHE 96
           +LLVGP G GKT + + +A    VP I    + F E      A  V D            
Sbjct: 76  VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD------------ 123

Query: 97  CDYDVELAEQS------IIYIDEID 115
                 L E +      I++IDEID
Sbjct: 124 ------LFETAKRHAPCIVFIDEID 142

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* Length = 254

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 30/85 (35%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE------AGYVGDDVESIIQKLLHE 96
           +LLVGP G GKT + + +A    VP I    + F E      A  V D            
Sbjct: 52  VLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRD------------ 99

Query: 97  CDYDVELAEQS------IIYIDEID 115
                 L E +      I++IDEID
Sbjct: 100 ------LFETAKRHAPCIVFIDEID 118

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 18/86 (20%), Positives = 37/86 (43%), Gaps = 5/86 (5%)

Query: 39   EKSNILLVGPTGCGKTLMVK-TLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
            E   ++L GP G GKT+ +  TL    +  ++ ++ +S T    +    +   +      
Sbjct: 1303 EHRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPS 1362

Query: 98   DYDV----ELAEQSIIYIDEIDKISK 119
               V    +L +  +++ DEI+  S 
Sbjct: 1363 GETVLRPTQLGKWLVVFCDEINLPST 1388

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A Length = 253

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72
           L+ GPT  GKT M   +A+    P++ +D
Sbjct: 4  HLIYGPTCSGKTDMAIQIAQETGWPVVALD 33

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368

 Score = 41.5 bits (97), Expect = 1e-04
 Identities = 30/177 (16%), Positives = 62/177 (35%), Gaps = 17/177 (9%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
           ++GQ   ++   V        L +++     +    +L+ G  G GKT +   +A+ +  
Sbjct: 46  MVGQLAARRAAGV-------VLEMIREG--KIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96

Query: 67  PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYID--EIDKISKKTDVV 124
                               E++ Q         V +   ++  +   EID I+ +T   
Sbjct: 97  DTPFTAIAGSEIFSLEMSKTEALTQAF--RRSIGVRIKAGAVHTVSLHEIDVINSRT--Q 152

Query: 125 SGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFS 181
               +      +   ++ E +N  +    E+      P V  ID  ++L I   +FS
Sbjct: 153 GFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI--ESFS 207

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} Length = 331

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 16/65 (24%)

Query: 2  ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
          E+ + ++GQ      + +G+                    +ILL G  G  KTL V TLA
Sbjct: 24 EVGKVVVGQKYMINRLLIGI----------------CTGGHILLEGVPGLAKTLSVNTLA 67

Query: 62 KIINV 66
          K +++
Sbjct: 68 KTMDL 72

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* Length = 309

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 27/153 (17%), Positives = 56/153 (36%), Gaps = 27/153 (17%)

Query: 2   ELDRHIIGQHETKK----IVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMV 57
           ELDR +IG    K       ++ +    ++   L  +   L   ++   G  G GKT + 
Sbjct: 28  ELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTL---HMSFTGNPGTGKTTVA 84

Query: 58  KTLAKII-------NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIY 110
             +A ++          ++ V         Y+G       + L        + A   +++
Sbjct: 85  LKMAGLLHRLGYVRKGHLVSVTRDDLVG-QYIGHTAPKTKEVL--------KRAMGGVLF 135

Query: 111 IDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143
           IDE   + +       +   G+   + LL+++E
Sbjct: 136 IDEAYYLYRPD----NERDYGQEAIEILLQVME 164

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} Length = 274

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 34/151 (22%), Positives = 54/151 (35%), Gaps = 65/151 (43%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAG--------------YVGD---D 85
           +LL GP GCGKTL+ K +A                E+G              YVG+    
Sbjct: 47  VLLAGPPGCGKTLLAKAVA---------------NESGLNFISVKGPELLNMYVGESERA 91

Query: 86  VESIIQKLLHECDYDVELAEQS---IIYIDEIDKISKKTDVVSGKDVSG--EGVQQSLLK 140
           V  + Q+           A+ S   +I+ DE+D +  +         +G    V   LL 
Sbjct: 92  VRQVFQR-----------AKNSAPCVIFFDEVDALCPR----RSDRETGASVRVVNQLLT 136

Query: 141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTN 171
            ++G+         ++       VF +  TN
Sbjct: 137 EMDGLE-------ARQQ------VFIMAATN 154

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758

 Score = 40.7 bits (96), Expect = 3e-04
 Identities = 22/89 (24%), Positives = 39/89 (43%), Gaps = 28/89 (31%)

Query: 44  LLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE-----------AGYVGDD-----VE 87
           L  GPTG GKT +   L+K + + ++  D + + E            GYVG D      +
Sbjct: 492 LFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTD 551

Query: 88  SIIQKLLHECDYDVELAEQSIIYIDEIDK 116
           ++I+               +++ +DEI+K
Sbjct: 552 AVIKH------------PHAVLLLDEIEK 568

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* Length = 758

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 32/86 (37%), Positives = 46/86 (53%), Gaps = 16/86 (18%)

Query: 40  KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFT------EAG--YVGDDVES 88
           K+N LLVG +G GKT + + LA  I   +VP ++ D T ++       AG  Y G D E 
Sbjct: 207 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRG-DFEK 265

Query: 89  IIQKLLHECDYDVELAEQSIIYIDEI 114
             + LL +    +E    SI++IDEI
Sbjct: 266 RFKALLKQ----LEQDTNSILFIDEI 287

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A Length = 323

 Score = 39.8 bits (94), Expect = 4e-04
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73
          I L+GPT  GKT +   LA  +   +I VD+
Sbjct: 8  IFLMGPTAAGKTDLAMALADALPCELISVDS 38

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A Length = 316

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 20/31 (64%)

Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDA 73
          I L+GPT  GKT +   L KI+ V +I VD+
Sbjct: 13 IFLMGPTASGKTALAIELRKILPVELISVDS 43

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191

 Score = 38.1 bits (88), Expect = 8e-04
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL G  G GK+ + + LA +  VP +              DD+   I+    +  +  +
Sbjct: 12  LLLSGHPGSGKSTIAEALANLPGVPKVHFH----------SDDLWGYIKHGRID-PWLPQ 60

Query: 103 LAEQSIIYIDEIDKISK 119
             +Q+ + +     ++ 
Sbjct: 61  SHQQNRMIMQIAADVAG 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	225
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	99.98
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	99.97
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	99.97
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	99.97
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	99.97
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	99.97
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.96
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	99.95
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	99.95
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	99.94
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	99.92
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	99.92
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	99.92
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	99.91
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	99.9
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	99.9
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	99.89
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	99.89
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.89
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	99.88
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	99.88
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	99.88
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	99.88
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	99.88
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	99.87
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	99.87
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	99.87
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.87
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	99.85
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	99.84
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	99.81
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	99.81
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	99.81
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	99.8
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	99.8
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	99.79
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.79
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	99.78
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.77
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	99.76
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	99.75
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	99.73
2r44_A	331	Uncharacterized protein; putative ATPase, structur	99.72
3f9v_A	595	Minichromosome maintenance protein MCM; replicativ	99.71
3co5_A	143	Putative two-component system transcriptional RES	99.71
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	99.71
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	99.71
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	99.71
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	99.7
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.69
3pvs_A	447	Replication-associated recombination protein A; ma	99.68
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.68
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	99.68
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	99.67
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	99.66
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	99.64
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	99.63
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.62
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	99.59
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	99.59
3f8t_A	506	Predicted ATPase involved in replication control,	99.56
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	99.56
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	99.55
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.55
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.55
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	99.55
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.54
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.54
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.54
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.53
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	99.52
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.5
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	99.5
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	99.49
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	99.48
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	99.46
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	99.45
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	99.45
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.44
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	99.43
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.43
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	99.42
3bos_A	242	Putative DNA replication factor; P-loop containing	99.4
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	99.4
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	99.34
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.19
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.15
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.07
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	99.07
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	99.01
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	98.98
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.97
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	98.97
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	98.78
2qgz_A	308	Helicase loader, putative primosome component; str	98.75
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.71
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	98.67
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.61
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	98.59
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	98.55
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.51
2fna_A	357	Conserved hypothetical protein; structural genomic	98.4
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	98.39
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.3
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	98.21
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	98.2
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.13
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.12
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	98.11
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.08
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.08
1via_A	175	Shikimate kinase; structural genomics, transferase	98.07
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.07
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.06
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.06
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.06
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.05
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.05
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.03
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.01
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.01
1g6h_A	257	High-affinity branched-chain amino acid transport	98.01
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.01
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.0
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.99
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.99
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.99
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.99
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.98
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.98
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.97
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.97
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.97
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.96
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.95
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.95
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.95
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.95
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.94
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.94
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.93
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.91
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.91
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.91
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.91
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.9
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.9
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.9
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.9
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.9
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.89
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.89
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.88
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.88
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.87
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.86
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.86
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.86
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.86
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.86
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.85
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.85
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.85
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.85
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.85
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.85
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.85
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.84
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.84
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.84
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	97.83
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.83
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	97.83
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.82
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.82
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	97.82
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.81
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.81
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.81
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.8
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	97.8
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.79
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.79
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	97.79
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.79
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.78
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.78
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.77
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.77
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.77
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.76
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.76
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.76
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.75
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.75
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.75
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.74
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.73
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.72
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.71
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	97.7
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.7
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.7
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.69
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.69
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.69
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.68
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.68
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.67
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	97.67
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.67
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.67
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.67
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.66
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.65
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.65
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	97.62
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.62
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.61
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.61
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.61
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.6
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.6
1u94_A	356	RECA protein, recombinase A; homologous recombinat	97.6
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.6
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.59
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	97.59
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	97.59
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.57
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.57
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.57
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.57
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.56
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	97.56
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.55
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	97.54
1xp8_A	366	RECA protein, recombinase A; recombination, radior	97.54
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.54
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.53
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.53
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	97.51
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.51
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.51
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.5
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.49
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.49
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.49
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.48
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	97.48
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.48
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.47
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.47
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.45
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.45
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.45
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.45
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.45
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.45
2iut_A	574	DNA translocase FTSK; nucleotide-binding, chromoso	97.44
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.44
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.43
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	97.43
2og2_A	359	Putative signal recognition particle receptor; nuc	97.43
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	97.42
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.42
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.4
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.39
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.37
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	97.37
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.36
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.36
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.36
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.35
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.29
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	97.28
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	97.27
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.27
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.25
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.23
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	97.23
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	97.22
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.22
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.21
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.21
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.21
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.19
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.18
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	97.18
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.17
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.17
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	97.17
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.16
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.16
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.15
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.11
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.11
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.11
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.11
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.1
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	97.08
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	97.07
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	97.06
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	97.05
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	97.04
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	97.04
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.04
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	97.03
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.03
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.03
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.03
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.02
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.02
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.01
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.01
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.99
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.94
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.93
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	96.93
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.91
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.91
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	96.91
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	96.9
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.87
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	96.87
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.87
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.87
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.87
3io5_A	333	Recombination and repair protein; storage dimer, i	96.85
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.84
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	96.83
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.82
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.82
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.82
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.82
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.81
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.81
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.79
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.78
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.77
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.76
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.74
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	96.74
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	96.73
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.73
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.69
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	96.68
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.67
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	96.67
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.67
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	96.66
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	96.62
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	96.61
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.6
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	96.6
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.59
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	96.58
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.58
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	96.54
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	96.54
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.53
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	96.52
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.51
2xxa_A	433	Signal recognition particle protein; protein trans	96.5
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.49
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	96.45
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	96.45
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.45
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.45
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.43
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.42
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.42
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.4
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.38
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.38
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	96.37
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.36
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.36
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.36
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.36
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.35
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.34
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.33
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.32
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.32
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.31
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.29
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.27
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.27
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	96.27
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.26
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	96.25
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.23
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.23
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.23
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.21
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.21
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	96.2
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.2
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.2
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.19
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.18
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.18
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	96.16
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.16
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.16
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.14
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.14
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.13
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	96.13
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.1
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.1
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.09
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.09
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.08
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	96.08
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	96.07
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.07
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.06
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.06
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.02
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.01
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.01
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.99
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.99
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.99
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	95.99
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	95.98
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.98
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	95.97
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	95.97
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	95.96
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.96
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.96
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	95.95
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.94
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	95.94
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.94
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	95.94
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	95.93
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	95.93
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	95.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	95.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.91
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.91
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	95.9
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.9
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.9
3ice_A	422	Transcription termination factor RHO; transcriptio	95.9
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.88
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	95.86
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	95.85
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	95.85
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	95.85
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	95.84
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.84
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	95.83
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	95.81
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	95.81
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	95.8
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.79
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.78
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.77
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	95.76
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	95.76
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.75
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	95.75
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	95.74
1e69_A	322	Chromosome segregation SMC protein; structural mai	95.73
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.72
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	95.72
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	95.72
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	95.72
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.71
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	95.71
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	95.71
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	95.71
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.7
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	95.7
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	95.69
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.68
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	95.67
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	95.66
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	95.66
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.64
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.62
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	95.61
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.61
2xzl_A	802	ATP-dependent helicase NAM7; hydrolase-RNA complex	95.6
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.59
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.57
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.57
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.57
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	95.57
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.55
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.54
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	95.52
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.51
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.51

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.1e-33  Score=236.36  Aligned_cols=173  Identities=24%  Similarity=0.347  Sum_probs=147.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++|+.|.+.+.+++.++..+...++.. ++++|||||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus       148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~-prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s-k~vGe  225 (405)
T 4b4t_J          148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQ-PKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ-KYIGE  225 (405)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCC-CCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC-SSTTH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc-cccch
Confidence            4689999999999999999999888888777754 469999999999999999999999999999999999985 79998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . +..++.+|..+    +...|+||||||+|++++.+.... +.+....++.+.|+..||+...           ..+  
T Consensus       226 s-e~~vr~lF~~A----r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-----------~~~--  287 (405)
T 4b4t_J          226 G-SRMVRELFVMA----REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET-----------SKN--  287 (405)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC-----------CCC--
T ss_pred             H-HHHHHHHHHHH----HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC-----------CCC--
Confidence            7 77888999887    667899999999999998875543 2233445677889999987531           223  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.||+|++|  |||++|.++.|+.++
T Consensus       288 V~vIaATNr-------pd~LDpAllRpGRfD~~I~i~lPd~~~  323 (405)
T 4b4t_J          288 IKIIMATNR-------LDILDPALLRPGRIDRKIEFPPPSVAA  323 (405)
T ss_dssp             EEEEEEESC-------SSSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred             eEEEeccCC-------hhhCCHhHcCCCcCceEEEcCCcCHHH
Confidence            999999999       7799999999  999999999999876

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-32  Score=230.59  Aligned_cols=173  Identities=22%  Similarity=0.302  Sum_probs=146.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++|+.|.+.+.+++.++..+...++.. +++||||||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus       182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~-prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s-k~vGe  259 (437)
T 4b4t_I          182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKP-PKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ-KYLGD  259 (437)
T ss_dssp             GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCC-CSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC-SSSSH
T ss_pred             eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh-ccCch
Confidence            4579999999999999999888888888777754 469999999999999999999999999999999999985 79998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . +..++.+|..+    +...|+||||||+|.+...|.... +.+....++...|+..||+...           ..+  
T Consensus       260 s-ek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~-----------~~~--  321 (437)
T 4b4t_I          260 G-PRLCRQIFKVA----GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD-----------RGD--  321 (437)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC-----------SSS--
T ss_pred             H-HHHHHHHHHHH----HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC-----------CCC--
Confidence            7 77888888876    667899999999999999886544 2333445567778888886431           122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.||+|++|  |||++|.|+.|+.++
T Consensus       322 ViVIaATNr-------pd~LDpALlRpGRfD~~I~v~lPd~~~  357 (437)
T 4b4t_I          322 VKVIMATNK-------IETLDPALIRPGRIDRKILFENPDLST  357 (437)
T ss_dssp             EEEEEEESC-------STTCCTTSSCTTTEEEEECCCCCCHHH
T ss_pred             EEEEEeCCC-------hhhcCHHHhcCCceeEEEEcCCcCHHH
Confidence            999999999       7799999999  999999999999876

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-32  Score=231.52  Aligned_cols=173  Identities=20%  Similarity=0.312  Sum_probs=145.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++|+.|.+.+..++.++..+...++.. ++++|||||||||||++|+++|++++.+|+.++++++.+ +|.|.
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~-prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~-~~vGe  258 (434)
T 4b4t_M          181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRA-PKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ-MYIGE  258 (434)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCC-CCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS-SCSSH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh-cccch
Confidence            5679999999999999999988888888777754 469999999999999999999999999999999999985 69998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ++.++.+|..+    +...|+||||||+|.+...|.... +.......+...|+..||+...           ..+  
T Consensus       259 s-e~~ir~lF~~A----~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~-----------~~~--  320 (434)
T 4b4t_M          259 G-AKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS-----------DDR--  320 (434)
T ss_dssp             H-HHHHHHHHHHH----HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS-----------SCS--
T ss_pred             H-HHHHHHHHHHH----HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC-----------CCC--
Confidence            7 67888888876    667899999999999998875443 2222334466778888887532           122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.||+|++|  |||++|.|+.|+.++
T Consensus       321 ViVIaaTNr-------p~~LD~AllRpGRfD~~I~i~lPd~~~  356 (434)
T 4b4t_M          321 VKVLAATNR-------VDVLDPALLRSGRLDRKIEFPLPSEDS  356 (434)
T ss_dssp             SEEEEECSS-------CCCCCTTTCSTTSEEEEEECCCCCHHH
T ss_pred             EEEEEeCCC-------chhcCHhHhcCCceeEEEEeCCcCHHH
Confidence            899999999       7799999999  999999999999876

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=3.6e-32  Score=230.33  Aligned_cols=173  Identities=22%  Similarity=0.303  Sum_probs=146.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++|+.|.+.+.+++.++..+...++. +++++|||||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus       181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~-~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s-k~~Ge  258 (437)
T 4b4t_L          181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD-KYIGE  258 (437)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC-CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC-SSSSH
T ss_pred             hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc-ccchH
Confidence            467999999999999999999888888877775 4569999999999999999999999999999999999985 69998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|..+    ....|+||||||+|.++..|.... +.+.....+.+.||..||+...           ..+  
T Consensus       259 s-e~~ir~~F~~A----~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-----------~~~--  320 (437)
T 4b4t_L          259 S-ARIIREMFAYA----KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN-----------LGQ--  320 (437)
T ss_dssp             H-HHHHHHHHHHH----HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC-----------TTS--
T ss_pred             H-HHHHHHHHHHH----HhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC-----------CCC--
Confidence            6 67788888876    567899999999999998876543 2333345567789999997532           122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.||+|++|  |||+.|.|+.|+.+.
T Consensus       321 vivI~ATNr-------p~~LDpAllRpGRfD~~I~i~lPd~~~  356 (437)
T 4b4t_L          321 TKIIMATNR-------PDTLDPALLRPGRLDRKVEIPLPNEAG  356 (437)
T ss_dssp             SEEEEEESS-------TTSSCTTTTSTTSEEEEECCCCCCHHH
T ss_pred             eEEEEecCC-------chhhCHHHhCCCccceeeecCCcCHHH
Confidence            899999999       7799999999  699999999999876

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8e-32  Score=227.83  Aligned_cols=173  Identities=21%  Similarity=0.278  Sum_probs=144.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++|+.|.+.+.+++.++..+...++. ++++||||||||||||++|+++|++++.+|+.++++.+.+ +|.|+
T Consensus       209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~-pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s-k~vGe  286 (467)
T 4b4t_H          209 SDVGGCKDQIEKLREVVELPLLSPERFATLGID-PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ-KYVGE  286 (467)
T ss_dssp             SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCC-CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC-CSSSH
T ss_pred             HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCC-CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc-ccCCH
Confidence            468999999999999998888888888777775 4569999999999999999999999999999999999986 69998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ++.++.+|..+    +...|+||||||+|.+...|.... +.......+...|+..|++...           ..+  
T Consensus       287 s-ek~ir~lF~~A----r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~-----------~~~--  348 (467)
T 4b4t_H          287 G-ARMVRELFEMA----RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP-----------RGN--  348 (467)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC-----------TTT--
T ss_pred             H-HHHHHHHHHHH----HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC-----------CCc--
Confidence            7 67788888876    667899999999999998875543 2233334566778888886431           122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.||+|++|  |||+.|.|+.|+.++
T Consensus       349 ViVIaATNr-------pd~LDpALlRpGRFD~~I~i~lPd~~~  384 (467)
T 4b4t_H          349 IKVMFATNR-------PNTLDPALLRPGRIDRKVEFSLPDLEG  384 (467)
T ss_dssp             EEEEEECSC-------TTSBCHHHHSTTTCCEEECCCCCCHHH
T ss_pred             EEEEeCCCC-------cccCChhhhccccccEEEEeCCcCHHH
Confidence            999999999       7799999999  999999999999876

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8.8e-32  Score=227.63  Aligned_cols=173  Identities=25%  Similarity=0.370  Sum_probs=146.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++|+.|.+.+..+..++..+...++.. ++++|||||||||||++|+++|+.++.+|+.++++.+.+ +|.|.
T Consensus       172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~-prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~-~~~Ge  249 (428)
T 4b4t_K          172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDP-PRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH-KYLGE  249 (428)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCC-CCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC-SSCSH
T ss_pred             HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCC-CceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc-cccch
Confidence            5689999999999999998888888888777754 469999999999999999999999999999999999875 69998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|..+    +...|+|+||||+|.+...|.... +.+....++.+.|+..||+...           ..+  
T Consensus       250 ~-e~~ir~lF~~A----~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~-----------~~~--  311 (428)
T 4b4t_K          250 G-PRMVRDVFRLA----RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQ-----------STN--  311 (428)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCS-----------SCS--
T ss_pred             h-HHHHHHHHHHH----HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCC-----------CCC--
Confidence            7 67788888876    567899999999999998885544 3344456788899999998532           122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccc-cccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFL-EKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~-~~~~~~  204 (225)
                      +++|+|||.       ++.||+|++|  |||++|.|| .|+.++
T Consensus       312 v~vI~aTN~-------~~~LD~AllRpGRfd~~I~~p~lPd~~~  348 (428)
T 4b4t_K          312 VKVIMATNR-------ADTLDPALLRPGRLDRKIEFPSLRDRRE  348 (428)
T ss_dssp             EEEEEEESC-------SSSCCHHHHSSSSEEEEEECCSSCCHHH
T ss_pred             EEEEEecCC-------hhhcChhhhcCCcceEEEEcCCCCCHHH
Confidence            899999999       7799999999  999999997 677655

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.96  E-value=1.7e-29  Score=227.43  Aligned_cols=173  Identities=21%  Similarity=0.328  Sum_probs=135.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.|.+.+.++..++..+...+.. +++++|||||||||||++|+++|++++.+|+.++++++.+ +|.|+
T Consensus       477 ~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~-~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s-~~vGe  554 (806)
T 3cf2_A          477 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGE  554 (806)
T ss_dssp             TTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCC-CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT-TTCSS
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCC-CCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc-cccch
Confidence            357899999999999999888888777777764 4468999999999999999999999999999999999885 79999


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ++.++.+|..+    +...||||||||+|++.+.|+... +.....+++.+.||..||+...           ..+  
T Consensus       555 s-e~~vr~lF~~A----r~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~-----------~~~--  616 (806)
T 3cf2_A          555 S-EANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-----------KKN--  616 (806)
T ss_dssp             C-HHHHHHHHHHH----HTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS-----------SSS--
T ss_pred             H-HHHHHHHHHHH----HHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC-----------CCC--
Confidence            8 77899999887    567899999999999998886432 2334456789999999998542           123  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.||+|++|  ||++.|+++.|+.+.
T Consensus       617 V~vi~aTN~-------p~~lD~AllRpgRfd~~i~v~lPd~~~  652 (806)
T 3cf2_A          617 VFIIGATNR-------PDIIDPAILRPGRLDQLIYIPLPDEKS  652 (806)
T ss_dssp             EEEECC-CC-------SSSSCHHHHSTTTSCCEEEC-----CH
T ss_pred             EEEEEeCCC-------chhCCHhHcCCCcceEEEEECCcCHHH
Confidence            999999999       6699999999  999999999999876

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=99.95  E-value=5.1e-30  Score=214.66  Aligned_cols=220  Identities=53%  Similarity=0.880  Sum_probs=150.5

Q ss_pred             CcceeechhhHHhhheeeeEecccceEee-cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLL-KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~-~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      |++.|+||+.+++.+..++...+.+.... .......+..++||+||||||||++|+++|+.++.+++.+++..+...+|
T Consensus        13 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~   92 (363)
T 3hws_A           13 LDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGY   92 (363)
T ss_dssp             HHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHH
T ss_pred             HHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccc
Confidence            56779999999999998885444332211 11222235679999999999999999999999999999999998877678


Q ss_pred             cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910          82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ  160 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~  160 (225)
                      .|......++.++..+.+.+....++||||||+|++.+.++... +.+.+++++++.|+++|++....++..+++..+..
T Consensus        93 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~  172 (363)
T 3hws_A           93 VGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQ  172 (363)
T ss_dssp             HHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC---------------
T ss_pred             ccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCC
Confidence            88766677788887776666677899999999999998765443 34445556999999999966555555566655555


Q ss_pred             CCceeEEecCcceeeccCccccHHHHHHhhccc--ccccccccccc------chhcccCChhHHHHccCCCC
Q psy5910         161 NPQVFNIDTTNILFIAGGAFSGIENFIINRINQ--ETNFLEKLNNN------YNLICETNTEDLINFGIIPV  224 (225)
Q Consensus       161 ~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~--~i~~~~~~~~~------~~l~~~~~~~~l~~~~~~~~  224 (225)
                      +  +++|+|||.+||+++++++++..+.+|+..  .++|.......      ..+...+.++++.++++.|+
T Consensus       173 ~--~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~  242 (363)
T 3hws_A          173 E--FLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPE  242 (363)
T ss_dssp             ---CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHH
T ss_pred             c--eEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHH
Confidence            5  889999999999999999999999988765  27776654332      35566666666666555544

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=99.95  E-value=2.9e-29  Score=210.99  Aligned_cols=221  Identities=49%  Similarity=0.804  Sum_probs=143.3

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEee----------------cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLL----------------KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~----------------~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .|++.|+||+++++.|..++..++.+.+..                ...+...+..++||+||||||||++|+++|+.++
T Consensus        18 ~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           18 VLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence            367889999999999998875444332210                0001123456899999999999999999999999


Q ss_pred             CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhc
Q psy5910          66 VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        66 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~  144 (225)
                      .+++.+++..+...+|.|......+...+....+.+....++|+||||++++...+.... +.+...+.+++.|+++|++
T Consensus        98 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~  177 (376)
T 1um8_A           98 IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG  177 (376)
T ss_dssp             CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHC
T ss_pred             CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhc
Confidence            999999999887667888766666777776665555667899999999999988754332 3444556689999999997


Q ss_pred             CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc---chhcccCChhHHHHcc
Q psy5910         145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN---YNLICETNTEDLINFG  220 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~---~~l~~~~~~~~l~~~~  220 (225)
                      ....++..++...+..+  ++++.|+|.+||++++++.+++++.+||... ++|+.+..+.   ..+.+++.++++.+.+
T Consensus       178 ~~~~~~~~~~~~~~~~~--~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~  255 (376)
T 1um8_A          178 SLVNIPPKGGRKHPEGN--FIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG  255 (376)
T ss_dssp             CEEC-----------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred             cceecccccccccCCcc--eEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcC
Confidence            66566666666655555  8999999999999999999999999999865 8888776531   3455556666665555


Q ss_pred             CCCC
Q psy5910         221 IIPV  224 (225)
Q Consensus       221 ~~~~  224 (225)
                      +.|+
T Consensus       256 ~~p~  259 (376)
T 1um8_A          256 LIPE  259 (376)
T ss_dssp             CCHH
T ss_pred             CChH
Confidence            5543

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=99.94  E-value=3.1e-28  Score=219.34  Aligned_cols=171  Identities=23%  Similarity=0.338  Sum_probs=145.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.|++.+.+++.++..+...+.. ++++||||||||||||++|+++|++++.+++.+++.++.+ +|.|+
T Consensus       204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~-~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s-k~~ge  281 (806)
T 3cf2_A          204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE  281 (806)
T ss_dssp             GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCC-CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS-SCTTH
T ss_pred             hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCC-CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc-ccchH
Confidence            458999999999999998888888888877775 4469999999999999999999999999999999999875 68887


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . +..++.+|..+    ....|+||||||+|.+.++++...  .....++.+.|+..|++....             .++
T Consensus       282 s-e~~lr~lF~~A----~~~~PsIIfIDEiDal~~~r~~~~--~~~~~riv~~LL~~mdg~~~~-------------~~V  341 (806)
T 3cf2_A          282 S-ESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQR-------------AHV  341 (806)
T ss_dssp             H-HHHHHHHHHHH----TTSCSEEEEEESGGGTCCTTTTCC--CTTHHHHHHHHHTHHHHCCGG-------------GCE
T ss_pred             H-HHHHHHHHHHH----HHcCCeEEEEehhcccccccCCCC--ChHHHHHHHHHHHHHhccccc-------------CCE
Confidence            6 77788888876    566899999999999998875532  334567889999999975321             128


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||.       ++.||++++|  ||++.|.++.|+.++
T Consensus       342 ~VIaaTN~-------~d~LD~ALrR~GRFd~~I~i~~Pd~~~  376 (806)
T 3cf2_A          342 IVMAATNR-------PNSIDPALRRFGRFDREVDIGIPDATG  376 (806)
T ss_dssp             EEEEECSS-------TTTSCTTTTSTTSSCEEEECCCCCHHH
T ss_pred             EEEEecCC-------hhhcCHHHhCCcccceEEecCCCCHHH
Confidence            99999999       7799999999  999999999999866

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=99.92  E-value=1.5e-25  Score=184.56  Aligned_cols=171  Identities=20%  Similarity=0.336  Sum_probs=134.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-CCCeEEeccCcccccCccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-NVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~~~~~~~~~~~g   83 (225)
                      +.|+|++++++.|.+.+.++..++.....  ...+.+++||+||||||||++|+++|+.+ +.+++.+++.++.. .|.|
T Consensus        12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~-~~~g   88 (322)
T 1xwi_A           12 SDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS-KWLG   88 (322)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCGGGSCT--TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC-SSCC
T ss_pred             HHhcCHHHHHHHHHHHHHHHHhCHHHHhC--CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh-hhhh
Confidence            45799999999999988766655444332  12455799999999999999999999999 88999999998875 5788


Q ss_pred             CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      .. ...++.+|..+    ....++||||||+|.+.+.+...  ......++.+.|+..|++....          ..+  
T Consensus        89 ~~-~~~~~~lf~~a----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~ld~~~~~----------~~~--  149 (322)
T 1xwi_A           89 ES-EKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGVD----------NDG--  149 (322)
T ss_dssp             SC-HHHHHHHHHHH----HHTSSEEEEEETTTGGGCCSSSC--CTTHHHHHHHHHHHHHHCSSSC----------CTT--
T ss_pred             HH-HHHHHHHHHHH----HhcCCcEEEeecHHHhccccccc--cchHHHHHHHHHHHHHhccccc----------CCC--
Confidence            76 66677777665    45678999999999998876443  1233456788899999875311          122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +++|++||.       ++.+|++++|||+..+.++.|+.+.
T Consensus       150 v~vI~atn~-------~~~ld~al~rRf~~~i~i~~P~~~~  183 (322)
T 1xwi_A          150 ILVLGATNI-------PWVLDSAIRRRFEKRIYIPLPEPHA  183 (322)
T ss_dssp             EEEEEEESC-------TTTSCHHHHHTCCEEEECCCCCHHH
T ss_pred             EEEEEecCC-------cccCCHHHHhhcCeEEEeCCcCHHH
Confidence            899999999       6689999999999999999998765

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=99.92  E-value=1.4e-25  Score=184.83  Aligned_cols=171  Identities=23%  Similarity=0.341  Sum_probs=131.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.|.+.+..+...+......  ..+..++||+||||||||++|+++|+.++.+++.+++.++.. .|.|.
T Consensus        18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~--~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-~~~g~   94 (322)
T 3eie_A           18 EDVAGLEGAKEALKEAVILPVKFPHLFKGN--RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGE   94 (322)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCGGGCCTT--CCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHT-TTGGG
T ss_pred             HHhcChHHHHHHHHHHHHHHHhCHHHHhcC--CCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhh-cccch
Confidence            357999999999999886665544433321  234568999999999999999999999999999999988864 57776


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...++.+|..+    ....++||||||+|.+...+...  ......++++.|+..|++...          ....  +
T Consensus        95 ~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~----------~~~~--v  155 (322)
T 3eie_A           95 S-EKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGN----------DSQG--V  155 (322)
T ss_dssp             H-HHHHHHHHHHH----HHTSSEEEEEECGGGGSCC--------CCTHHHHHHHHHHHGGGGT----------SCCC--E
T ss_pred             H-HHHHHHHHHHH----HhcCCeEEEechhhhhhccCCCC--cchHHHHHHHHHHHHhccccc----------cCCc--e
Confidence            5 56677777665    45678999999999999876432  223446688999999986421          1223  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.+|++++|||+..+.++.|+.+.
T Consensus       156 ~vi~atn~-------~~~ld~al~~Rf~~~i~~~~p~~~~  188 (322)
T 3eie_A          156 LVLGATNI-------PWQLDSAIRRRFERRIYIPLPDLAA  188 (322)
T ss_dssp             EEEEEESC-------GGGSCHHHHHHCCEEEECCCCCHHH
T ss_pred             EEEEecCC-------hhhCCHHHHcccCeEEEeCCCCHHH
Confidence            99999999       6789999999999999999998876

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=99.92  E-value=7.5e-26  Score=191.90  Aligned_cols=189  Identities=41%  Similarity=0.641  Sum_probs=143.3

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      .|++.|+||+++|+.|..++.+++++...........+.+++||+||||||||++|+++|+.++.+++.++++.+.+.+|
T Consensus        12 ~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~   91 (444)
T 1g41_A           12 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY   91 (444)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccce
Confidence            47889999999999999998777766544444444345679999999999999999999999999999999988877679


Q ss_pred             cCCcHHHHHHHHHHhcc---------------------------------------------------------------
Q psy5910          82 VGDDVESIIQKLLHECD---------------------------------------------------------------   98 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~---------------------------------------------------------------   98 (225)
                      .|.+....++.++..+.                                                               
T Consensus        92 vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~  171 (444)
T 1g41_A           92 VGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDK  171 (444)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------------------------------------------
T ss_pred             eeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcce
Confidence            99765665555543320                                                               


Q ss_pred             -------------h----------------------------------------------------------hhhhh-CC
Q psy5910          99 -------------Y----------------------------------------------------------DVELA-EQ  106 (225)
Q Consensus        99 -------------~----------------------------------------------------------~~~~~-~~  106 (225)
                                   .                                                          .++.. ..
T Consensus       172 ~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~  251 (444)
T 1g41_A          172 EIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQN  251 (444)
T ss_dssp             ------------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccC
Confidence                         0                                                          00122 46


Q ss_pred             CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccC-----ccc
Q psy5910         107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGG-----AFS  181 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~-----~~~  181 (225)
                      +++++||+|++....++ .+.+.+++.+|++||++||+.....           +  +..+.|+|++|||++     ++.
T Consensus       252 ~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~~~~-----------~--~~~~d~~~ilfI~~gaf~~~~~~  317 (444)
T 1g41_A          252 GIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGSTVST-----------K--HGMVKTDHILFIASGAFQVARPS  317 (444)
T ss_dssp             CEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCEEEE-----------T--TEEEECTTCEEEEEECCSSCCGG
T ss_pred             CeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhccccccc-----------c--cceecCCcEEEEeccccccCChh
Confidence            79999999999976442 3567788889999999999754321           1  466899999999998     555


Q ss_pred             cHHHHHHhhcccccccccccccc
Q psy5910         182 GIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       182 ~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++-+.++.||...+.|+..+.+.
T Consensus       318 dlipel~~R~~i~i~l~~lt~~e  340 (444)
T 1g41_A          318 DLIPELQGRLPIRVELTALSAAD  340 (444)
T ss_dssp             GSCHHHHTTCCEEEECCCCCHHH
T ss_pred             hcchHHhcccceeeeCCCCCHHH
Confidence            66688999999999999888876

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=99.91  E-value=8.6e-25  Score=182.37  Aligned_cols=171  Identities=23%  Similarity=0.334  Sum_probs=126.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.|.+.+..+...+..+..  ...+..++||+||||||||++|+++|+.++.+++.+++.++.. .|.|.
T Consensus        51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~--~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~-~~~g~  127 (355)
T 2qp9_X           51 EDVAGLEGAKEALKEAVILPVKFPHLFKG--NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS-KWMGE  127 (355)
T ss_dssp             GGSCCGGGHHHHHHHHTHHHHHCGGGGCS--SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHS-CC---
T ss_pred             HHhCCHHHHHHHHHHHHHHHHhCHHHHhc--CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhh-hhcch
Confidence            45799999999999988655444433332  1234568999999999999999999999999999999988864 57776


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...++.+|..+    ....++||||||+|.+.+.+...  ......++++.|+..|++...          +...  +
T Consensus       128 ~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~r~~~--~~~~~~~~~~~ll~~l~~~~~----------~~~~--v  188 (355)
T 2qp9_X          128 S-EKLVKQLFAMA----RENKPSIIFIDQVDALTGTRGEG--ESEASRRIKTELLVQMNGVGN----------DSQG--V  188 (355)
T ss_dssp             C-HHHHHHHHHHH----HHTSSEEEEEECGGGGTC--------CTHHHHHHHHHHHHHHHCC-------------CC--E
T ss_pred             H-HHHHHHHHHHH----HHcCCeEEEEechHhhcccCCCC--cchHHHHHHHHHHHHhhcccc----------cCCC--e
Confidence            5 55666777654    44578999999999999775432  223345678889999986431          1122  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||.       ++.++++++|||+..+.++.|+.+.
T Consensus       189 ~vI~atn~-------~~~ld~al~rRf~~~i~i~~P~~~~  221 (355)
T 2qp9_X          189 LVLGATNI-------PWQLDSAIRRRFERRIYIPLPDLAA  221 (355)
T ss_dssp             EEEEEESC-------GGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred             EEEeecCC-------cccCCHHHHcccCEEEEeCCcCHHH
Confidence            99999999       6689999999999999999998765

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=99.90  E-value=2.2e-25  Score=182.04  Aligned_cols=173  Identities=21%  Similarity=0.330  Sum_probs=130.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.|.+.+..+..++..+...++ .+..++||+||||||||++|+++|+.++.+++.+++.++.. .|.|.
T Consensus        15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~-~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~-~~~g~   92 (301)
T 3cf0_A           15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM-TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGE   92 (301)
T ss_dssp             GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC-CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH-HHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC-CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh-hhcCc
Confidence            35899999999999988665544443333333 23458999999999999999999999999999999988754 46666


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...+..+|..+    ....++++||||+|.+...++... .......++++.|+..|++...           ..+  
T Consensus        93 ~-~~~~~~~f~~a----~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~-----------~~~--  154 (301)
T 3cf0_A           93 S-EANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST-----------KKN--  154 (301)
T ss_dssp             C-TTHHHHHHHHH----HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT-----------TSS--
T ss_pred             h-HHHHHHHHHHH----HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC-----------CCC--
Confidence            5 34456666654    345789999999999987764322 1122334578899999986421           123  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.+|++++|  ||+..+.++.|+.+.
T Consensus       155 v~vi~atn~-------~~~ld~al~r~gRf~~~i~i~~p~~~~  190 (301)
T 3cf0_A          155 VFIIGATNR-------PDIIDPAILRPGRLDQLIYIPLPDEKS  190 (301)
T ss_dssp             EEEEEEESC-------GGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred             EEEEEecCC-------ccccChHHhcCCccceEEecCCcCHHH
Confidence            899999999       6689999999  999999999998865

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=99.90  E-value=3.1e-24  Score=174.61  Aligned_cols=148  Identities=16%  Similarity=0.186  Sum_probs=94.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK  119 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~  119 (225)
                      +.++||+||||||||++|+++|+.++.+++.++++.+.+ .|.|.. ...+...|..+....+...++||||||+|++.+
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~-~~~g~~-~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~  113 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELES-GNAGEP-AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG  113 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHC-C---HH-HHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhh-ccCchh-HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence            458999999999999999999999999999999988865 577765 555666776653333456899999999999998


Q ss_pred             cccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hccccccc
Q psy5910         120 KTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNF  197 (225)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~  197 (225)
                      .++...........+++.|+++||+................+  +++|+|||.       ++.+|++++|  ||+..+.+
T Consensus       114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~--v~vI~ttN~-------~~~ld~al~R~~R~d~~i~~  184 (293)
T 3t15_A          114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR--VPIIVTGND-------FSTLYAPLIRDGRMEKFYWA  184 (293)
T ss_dssp             ----------CHHHHHHHHHHHHHCCC-----------CCCC--CCEEEECSS-------CCC--CHHHHHHHEEEEEEC
T ss_pred             CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCC--cEEEEecCC-------cccCCHHHhCCCCCceeEeC
Confidence            654333333455678899999999643221111111112223  889999998       7789999998  89888865


Q ss_pred             c
Q psy5910         198 L  198 (225)
Q Consensus       198 ~  198 (225)
                      |
T Consensus       185 P  185 (293)
T 3t15_A          185 P  185 (293)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=99.89  E-value=4.2e-24  Score=183.09  Aligned_cols=171  Identities=20%  Similarity=0.335  Sum_probs=122.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-CCCeEEeccCcccccCccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-NVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~~~~~~~~~~~g   83 (225)
                      +.|+|++++++.|.+.+..+...+.....  ...+.+++||+||||||||++|+++|+.+ +.+++.+++.++.. .|.|
T Consensus       134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~--~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~-~~~g  210 (444)
T 2zan_A          134 SDVAGLEGAKEALKEAVILPIKFPHLFTG--KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS-KWLG  210 (444)
T ss_dssp             GGSCSCHHHHHHHHHHHTHHHHCTTTTSG--GGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHhhc--cCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh-hhcc
Confidence            45799999999999887554443332221  12345799999999999999999999999 88999999988864 5666


Q ss_pred             CcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          84 DDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      .. ...++.+|..+    ....++||||||+|.+.+.+...  ......++++.|+..|++...          +..+  
T Consensus       211 ~~-~~~~~~~f~~a----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~----------~~~~--  271 (444)
T 2zan_A          211 ES-EKLVKNLFQLA----RENKPSIIFIDEIDSLCGSRSEN--ESEAARRIKTEFLVQMQGVGV----------DNDG--  271 (444)
T ss_dssp             -C-CCTHHHHHHHH----HHSCSEEEEESCTTTTCCCSSCC--CCGGGHHHHHHHHTTTTCSSC----------CCSS--
T ss_pred             hH-HHHHHHHHHHH----HHcCCeEEEEechHhhccCCCCc--cccHHHHHHHHHHHHHhCccc----------CCCC--
Confidence            54 33455666554    44578999999999998775432  223345688889888886431          1122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.++++++|||+..+.++.|+.+.
T Consensus       272 v~vI~atn~-------~~~ld~al~rRf~~~i~i~~P~~~~  305 (444)
T 2zan_A          272 ILVLGATNI-------PWVLDSAIRRRFEKRIYIPLPEAHA  305 (444)
T ss_dssp             CEEEEEESC-------GGGSCHHHHTTCCEEEECCCCCHHH
T ss_pred             EEEEecCCC-------ccccCHHHHhhcceEEEeCCcCHHH
Confidence            899999999       6689999999999999999998765

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=99.89  E-value=5.1e-24  Score=182.89  Aligned_cols=172  Identities=22%  Similarity=0.325  Sum_probs=128.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.+.+.+.. +..+..+...+...+ .++||+||||||||++|+++++.++.+++.+++.++.. .|.|.
T Consensus        16 ~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p-~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~-~~~g~   92 (476)
T 2ce7_A           16 KDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMP-KGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVE-LFVGV   92 (476)
T ss_dssp             GGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCC-SEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTT-CCTTH
T ss_pred             HHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCC-CeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHH-HHhcc
Confidence            4589999999999887643 444444555555544 47999999999999999999999999999999988875 46665


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|..+    ....|+||||||+|.+..+++... +.+.....+++.|+..|++...           ...  
T Consensus        93 ~-~~~~r~lf~~A----~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~-----------~~~--  154 (476)
T 2ce7_A           93 G-AARVRDLFAQA----KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS-----------KEG--  154 (476)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG-----------GGT--
T ss_pred             c-HHHHHHHHHHH----HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC-----------CCC--
Confidence            4 44566676665    445789999999999998765322 3344445678899999986421           112  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|++||.       ++.+|++++|  ||++.+.++.|+.+.
T Consensus       155 viVIaaTn~-------~~~Ld~allR~gRFd~~i~i~~Pd~~~  190 (476)
T 2ce7_A          155 IIVMAATNR-------PDILDPALLRPGRFDKKIVVDPPDMLG  190 (476)
T ss_dssp             EEEEEEESC-------GGGSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred             EEEEEecCC-------hhhhchhhcccCcceeEeecCCCCHHH
Confidence            899999999       6689999998  999999999998754

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.89  E-value=5.9e-24  Score=171.28  Aligned_cols=171  Identities=21%  Similarity=0.355  Sum_probs=130.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.|.+.+..++.+...+.+.++..+. +++|+||||||||++++++|..++.+++.+++.++.. .|.|.
T Consensus        10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~-GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~-~~~~~   87 (274)
T 2x8a_A           10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN-MYVGE   87 (274)
T ss_dssp             --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCS-EEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS-STTHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCC-eEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh-hhhhH
Confidence            457999999999999888888888888888887766 5999999999999999999999999999999988754 35554


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...+..+|+.+    ....++++|+||++.+...+....  .....++.+.++..|++....           ..  +
T Consensus        88 ~-~~~i~~vf~~a----~~~~p~i~~~Deid~~~~~r~~~~--~~~~~~~~~~~l~~Lsgg~~~-----------~~--~  147 (274)
T 2x8a_A           88 S-ERAVRQVFQRA----KNSAPCVIFFDEVDALCPRRSDRE--TGASVRVVNQLLTEMDGLEAR-----------QQ--V  147 (274)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEETCTTTCC-----------CTTHHHHHHHHHHTCCST-----------TC--E
T ss_pred             H-HHHHHHHHHHH----HhcCCCeEeeehhhhhhcccCCCc--chHHHHHHHHHHHhhhccccc-----------CC--E
Confidence            3 45566677654    345789999999999876543211  111234678888888875311           12  7


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++++++|.       ++.+|++++|  ||++.|.++.|+.+.
T Consensus       148 i~ia~tn~-------p~~LD~al~r~gRfd~~i~~~~P~~~~  182 (274)
T 2x8a_A          148 FIMAATNR-------PDIIDPAILRPGRLDKTLFVGLPPPAD  182 (274)
T ss_dssp             EEEEEESC-------GGGSCHHHHSTTSSCEEEECCSCCHHH
T ss_pred             EEEeecCC-------hhhCCHhhcCcccCCeEEEeCCcCHHH
Confidence            88899999       7789999999  999999999999866

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=99.88  E-value=2.8e-23  Score=175.26  Aligned_cols=172  Identities=23%  Similarity=0.317  Sum_probs=120.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++.+++.|.+.+.....+.......  ..+..++||+||||||||++|+++|+.++.+++.+++..+.. .|.|.
T Consensus       115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~-~~~g~  191 (389)
T 3vfd_A          115 DDIAGQDLAKQALQEIVILPSLRPELFTGL--RAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTS-KYVGE  191 (389)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCGG--GCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC--------
T ss_pred             HHhCCHHHHHHHHHHHHHHhccCHHHhccc--CCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhc-cccch
Confidence            357999999999998875544433222222  234579999999999999999999999999999999998875 57776


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...+..+|..+    ....++||||||+|.+...+...  ......++++.|+..|++....         ...+  +
T Consensus       192 ~-~~~~~~~~~~a----~~~~~~il~iDEid~l~~~~~~~--~~~~~~~~~~~ll~~l~~~~~~---------~~~~--v  253 (389)
T 3vfd_A          192 G-EKLVRALFAVA----RELQPSIIFIDQVDSLLCERREG--EHDASRRLKTEFLIEFDGVQSA---------GDDR--V  253 (389)
T ss_dssp             C-HHHHHHHHHHH----HHSSSEEEEEETGGGGC----------CTHHHHHHHHHHHHHHHC--------------C--E
T ss_pred             H-HHHHHHHHHHH----HhcCCeEEEEECchhhcccCCCc--cchHHHHHHHHHHHHhhccccc---------CCCC--E
Confidence            5 45566666654    44577999999999997765332  2334566888999999864321         1123  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.++++++|||+..+.++.|+.+.
T Consensus       254 ~vI~atn~-------~~~l~~~l~~R~~~~i~i~~p~~~~  286 (389)
T 3vfd_A          254 LVMGATNR-------PQELDEAVLRRFIKRVYVSLPNEET  286 (389)
T ss_dssp             EEEEEESC-------GGGCCHHHHTTCCEEEECCCCCHHH
T ss_pred             EEEEecCC-------chhcCHHHHcCcceEEEcCCcCHHH
Confidence            99999998       6689999999999888888888766

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=99.88  E-value=2.7e-23  Score=173.46  Aligned_cols=172  Identities=22%  Similarity=0.310  Sum_probs=124.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++.+++.|.+.+..+.........  ...+..++||+||||||||++|+++|+.++.+++.+++..+.. .|.|.
T Consensus        84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~-~~~g~  160 (357)
T 3d8b_A           84 EDIAGVEFAKATIKEIVVWPMLRPDIFTG--LRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTS-KWVGE  160 (357)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCTTTSCG--GGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCC-SSTTH
T ss_pred             HHhCChHHHHHHHHHHHHHHhhChHhHhh--ccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhc-cccch
Confidence            45799999999999988654333222221  1234568999999999999999999999999999999988865 46665


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...++.++..+    ....++||||||+|.+...+...  ......++++.|+..|++....         +..+  +
T Consensus       161 ~-~~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~~~~~lL~~l~~~~~~---------~~~~--v  222 (357)
T 3d8b_A          161 G-EKMVRALFAVA----RCQQPAVIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTS---------SEDR--I  222 (357)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEETHHHHTBC--------CHHHHHHHHHHHHHHC-------------CCCC--E
T ss_pred             H-HHHHHHHHHHH----HhcCCeEEEEeCchhhhccCCCC--cchHHHHHHHHHHHHHhccccc---------CCCC--E
Confidence            4 45556666554    44578999999999998765332  2334456788899999864311         1223  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||.       ++.++++++|||+..+.++.|+.+.
T Consensus       223 ~vI~atn~-------~~~l~~~l~~Rf~~~i~i~~p~~~~  255 (357)
T 3d8b_A          223 LVVGATNR-------PQEIDEAARRRLVKRLYIPLPEASA  255 (357)
T ss_dssp             EEEEEESC-------GGGBCHHHHTTCCEEEECCCCCHHH
T ss_pred             EEEEecCC-------hhhCCHHHHhhCceEEEeCCcCHHH
Confidence            89999998       6689999999999888888888765

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=99.88  E-value=6.1e-23  Score=166.98  Aligned_cols=173  Identities=22%  Similarity=0.333  Sum_probs=125.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.|.+.+.....++.....  ...+..++||+||||||||++|+++++.++.+++.+++..+.. .|.|.
T Consensus        21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~--~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~-~~~~~   97 (297)
T 3b9p_A           21 TDIAGQDVAKQALQEMVILPSVRPELFTG--LRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTS-KYVGD   97 (297)
T ss_dssp             GGSCCCHHHHHHHHHHTHHHHHCGGGSCG--GGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSS-SSCSC
T ss_pred             HHhCChHHHHHHHHHHHHhhhhCHHHHhc--CCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhh-cccch
Confidence            45799999999999887554433222221  2234568999999999999999999999999999999988764 46665


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ....+.++..+    ....+++|||||+|.+...++...  .....++++.|+..+++.....        ....  +
T Consensus        98 ~-~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~ll~~l~~~~~~~--------~~~~--v  160 (297)
T 3b9p_A           98 G-EKLVRALFAVA----RHMQPSIIFIDEVDSLLSERSSSE--HEASRRLKTEFLVEFDGLPGNP--------DGDR--I  160 (297)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEETGGGTSBCC-------CCSHHHHHHHHHHHHHCC--------------C--E
T ss_pred             H-HHHHHHHHHHH----HHcCCcEEEeccHHHhccccccCc--chHHHHHHHHHHHHHhcccccC--------CCCc--E
Confidence            4 55556666554    445789999999999987764322  2233557888999998643210        0122  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++|++||.       ++.+++++++||+..+.++.|+.+.
T Consensus       161 ~vi~~tn~-------~~~l~~~l~~R~~~~i~~~~p~~~~  193 (297)
T 3b9p_A          161 VVLAATNR-------PQELDEAALRRFTKRVYVSLPDEQT  193 (297)
T ss_dssp             EEEEEESC-------GGGBCHHHHHHCCEEEECCCCCHHH
T ss_pred             EEEeecCC-------hhhCCHHHHhhCCeEEEeCCcCHHH
Confidence            88899988       6689999999999889999888765

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=99.88  E-value=2.4e-23  Score=168.38  Aligned_cols=174  Identities=25%  Similarity=0.322  Sum_probs=124.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.|.+.+.........+...+.. +..++||+||||||||++|+++++.++.+++.+++..+.. .|.|.
T Consensus        17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~-~~~~~   94 (285)
T 3h4m_A           17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIE-PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK-KFIGE   94 (285)
T ss_dssp             GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCC-CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC-CSTTH
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCC-CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH-hccch
Confidence            457999999999999886655544443333332 3458999999999999999999999999999999988764 46655


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...+...+..+    ....++||||||+|.+.+++....  .......+..|..+++.....        ....+  +
T Consensus        95 ~-~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~l~~ll~~~~~~--------~~~~~--~  157 (285)
T 3h4m_A           95 G-ASLVKDIFKLA----KEKAPSIIFIDEIDAIAAKRTDAL--TGGDREVQRTLMQLLAEMDGF--------DARGD--V  157 (285)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEETTHHHHBCCSSSC--CGGGGHHHHHHHHHHHHHHTT--------CSSSS--E
T ss_pred             H-HHHHHHHHHHH----HHcCCeEEEEECHHHhcccCcccc--CCccHHHHHHHHHHHHHhhCC--------CCCCC--E
Confidence            4 44555565554    445778999999999987654322  111223455555555431100        01122  8


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.+++++++  ||+..+.++.|+.++
T Consensus       158 ~vI~ttn~-------~~~l~~~l~~~~Rf~~~i~~~~p~~~~  192 (285)
T 3h4m_A          158 KIIGATNR-------PDILDPAILRPGRFDRIIEVPAPDEKG  192 (285)
T ss_dssp             EEEEECSC-------GGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred             EEEEeCCC-------chhcCHHHcCCCcCCeEEEECCCCHHH
Confidence            89999998       6789999999  999999999988866

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=99.88  E-value=5.5e-23  Score=164.04  Aligned_cols=172  Identities=23%  Similarity=0.347  Sum_probs=123.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.+.+.+.. ......+...+... +.+++|+||||||||++|+++++.++.+++.+++.++.. .+.|.
T Consensus        12 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~-~~~~~   88 (257)
T 1lv7_A           12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKI-PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-MFVGV   88 (257)
T ss_dssp             GGSCSCHHHHHHTHHHHHH-HHCGGGC-----CC-CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT-SCCCC
T ss_pred             HHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCC-CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHH-Hhhhh
Confidence            4579999999999876533 22223333333333 347999999999999999999999999999999988865 46666


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...+..+|+.+    ....++++||||+|.+...+.... +......+..+.++..+++..           ....  
T Consensus        89 ~-~~~~~~~~~~a----~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~--  150 (257)
T 1lv7_A           89 G-ASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEG--  150 (257)
T ss_dssp             C-HHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----------SSSC--
T ss_pred             h-HHHHHHHHHHH----HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----------cCCC--
Confidence            5 44566666654    334678999999999988764332 122223356778888887532           1122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|++||.       ++.++++++|  ||++.+.++.|+.++
T Consensus       151 ~~vI~~tn~-------~~~l~~~l~r~~rf~~~i~i~~P~~~~  186 (257)
T 1lv7_A          151 IIVIAATNR-------PDVLDPALLRPGRFDRQVVVGLPDVRG  186 (257)
T ss_dssp             EEEEEEESC-------TTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred             EEEEEeeCC-------chhCCHHHcCCCcCCeEEEeCCCCHHH
Confidence            889999998       6789999998  999998888888754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=99.87  E-value=1.2e-23  Score=181.71  Aligned_cols=170  Identities=24%  Similarity=0.339  Sum_probs=131.8

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .|+|++.+++.|.+.+.....+...+...+. .+..++||+||||||||++|+++++.++.+|+.++|..+.. .|.|..
T Consensus       205 ~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~-~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~-~~~g~~  282 (489)
T 3hu3_A          205 DIGGCRKQLAQIKEMVELPLRHPALFKAIGV-KPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGES  282 (489)
T ss_dssp             GCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC-CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHT-SCTTHH
T ss_pred             HcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC-CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhh-hhcchh
Confidence            5799999999999988665555444443333 23458999999999999999999999999999999988874 566654


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF  165 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  165 (225)
                       ...+...|..+    ....+++|||||+|.+.+.++...  .....++++.|+.+|++...           ..+  ++
T Consensus       283 -~~~~~~~f~~A----~~~~p~iLfLDEId~l~~~~~~~~--~~~~~~~~~~LL~~ld~~~~-----------~~~--v~  342 (489)
T 3hu3_A          283 -ESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLKQ-----------RAH--VI  342 (489)
T ss_dssp             -HHHHHHHHHHH----HHTCSEEEEEESHHHHCBCTTSCC--CHHHHHHHHHHHHHHHHSCT-----------TSC--EE
T ss_pred             -HHHHHHHHHHH----HhcCCcEEEecchhhhcccccccc--chHHHHHHHHHHHHhhcccc-----------CCc--eE
Confidence             45566677665    445688999999999998764321  22345689999999996421           122  89


Q ss_pred             EEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         166 NIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       166 ~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +|+|||.       ++.+++++++  ||+..+.++.|+.++
T Consensus       343 vIaaTn~-------~~~Ld~al~r~gRf~~~i~i~~P~~~e  376 (489)
T 3hu3_A          343 VMAATNR-------PNSIDPALRRFGRFDREVDIGIPDATG  376 (489)
T ss_dssp             EEEEESC-------GGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred             EEEecCC-------ccccCHHHhCCCcCceEEEeCCCCHHH
Confidence            9999999       6679999999  899999999998866

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=99.87  E-value=2.7e-23  Score=169.58  Aligned_cols=193  Identities=36%  Similarity=0.574  Sum_probs=130.2

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      |++.|+|++++++.+..++...+.+..............++||+||||||||++|+++++.++.+++.+++..+...+|.
T Consensus        13 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~   92 (310)
T 1ofh_A           13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYV   92 (310)
T ss_dssp             HHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSG
T ss_pred             HhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCcc
Confidence            56789999999999988774432211111111111234689999999999999999999999999999999988766788


Q ss_pred             CCcHHHHHHHHHHhcchhhhhh-CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELA-EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                      |.+....+..++....+.+... .++|+||||+|++.+..... +.+...+.+++.|+++|++.......  + ..+..+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~-~~~~~~~~~~~~Ll~~le~~~~~~~~--~-~~~~~~  168 (310)
T 1ofh_A           93 GKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTKH--G-MVKTDH  168 (310)
T ss_dssp             GGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCC-SSHHHHHHHHHHHHHHHHCCEEEETT--E-EEECTT
T ss_pred             CccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCcccccc-ccchhHHHHHHHHHHHhcCCeEeccc--c-cccCCc
Confidence            8765666677766554333333 57899999999998775321 22233344689999999964321110  0 011112


Q ss_pred             CceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                        +++|+++|.   .+.++..+++++++||+..+.|+.|+.+.
T Consensus       169 --~~~i~~~~~---~~~~~~~l~~~l~~R~~~~i~~~~~~~~~  206 (310)
T 1ofh_A          169 --ILFIASGAF---QVARPSDLIPELQGRLPIRVELTALSAAD  206 (310)
T ss_dssp             --CEEEEEECC---SSSCGGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred             --EEEEEcCCc---ccCCcccCCHHHHhhCCceEEcCCcCHHH
Confidence              555555332   01235689999999999879999998765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=99.87  E-value=8.4e-23  Score=163.03  Aligned_cols=172  Identities=25%  Similarity=0.363  Sum_probs=111.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.+.+.+.. ......+...+.. .++++||+||||||||++|+++++.++.+++.+++..+.. .|.|.
T Consensus         6 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~-~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~-~~~~~   82 (262)
T 2qz4_A            6 KDVAGMHEAKLEVREFVDY-LKSPERFLQLGAK-VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVE-VIGGL   82 (262)
T ss_dssp             TSSCSCHHHHHHHHHHHHH-HHCCC------CC-CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSS-SSTTH
T ss_pred             HHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHh-hccCh
Confidence            4579999999999876533 3333333333332 3458999999999999999999999999999999988764 35544


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCC--CCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSG--KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~--~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                      . ...+..++..+    ....++||||||+|.+...+.....  ...........|+..+++..           .... 
T Consensus        83 ~-~~~~~~~~~~a----~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~-----------~~~~-  145 (262)
T 2qz4_A           83 G-AARVRSLFKEA----RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG-----------TTDH-  145 (262)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC-----------TTCC-
T ss_pred             h-HHHHHHHHHHH----HhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC-----------CCCC-
Confidence            3 44556666554    3346899999999999876532210  11122234556666666432           1122 


Q ss_pred             ceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         163 QVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       163 ~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                       +++|+|+|.       ++.+|++++|  ||+..+.++.|+.++
T Consensus       146 -~~vi~~tn~-------~~~ld~~l~~~~R~~~~i~i~~p~~~~  181 (262)
T 2qz4_A          146 -VIVLASTNR-------ADILDGALMRPGRLDRHVFIDLPTLQE  181 (262)
T ss_dssp             -EEEEEEESC-------GGGGGSGGGSTTSCCEEEECCSCCHHH
T ss_pred             -EEEEecCCC-------hhhcCHHHhcCCcCCeEEEeCCcCHHH
Confidence             889999998       6689999999  999998888888765

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=99.85  E-value=5.1e-22  Score=171.36  Aligned_cols=172  Identities=23%  Similarity=0.353  Sum_probs=127.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.+.+.+. .+.....+.+.++..+. +++|+||||||||+||++|+..++.+++.+++.++.+ .|.|.
T Consensus        31 ~dv~G~~~~k~~l~~lv~-~l~~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~-~~~g~  107 (499)
T 2dhr_A           31 KDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-MFVGV  107 (499)
T ss_dssp             TSSCSCHHHHHHHHHHHH-HHHCGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTS-SCTTH
T ss_pred             HHcCCcHHHHHHHHHHHH-HhhchhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHH-hhhhh
Confidence            457999999999988653 34445556666766655 6999999999999999999999999999999988864 45554


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...+..+|+.+    ....++++||||+|.+...+.... +.........+.|+..|++...           ...  
T Consensus       108 ~-~~~v~~lfq~a----~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~-----------~~~--  169 (499)
T 2dhr_A          108 G-AARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----------DTA--  169 (499)
T ss_dssp             H-HHHHHHHTTTS----SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS-----------SCC--
T ss_pred             H-HHHHHHHHHHH----HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc-----------Ccc--
Confidence            3 34456666654    234679999999999987654321 1122233456777777775431           112  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++++++|.       ++.+|++++|  ||++.+.++.|+.+.
T Consensus       170 viviAatn~-------p~~LD~aLlr~gRfdr~i~i~~Pd~~~  205 (499)
T 2dhr_A          170 IVVMAATNR-------PDILDPALLRPGRFDRQIAIDAPDVKG  205 (499)
T ss_dssp             CEEEECCSC-------GGGSCTTTSSTTSSCCEEECCCCCHHH
T ss_pred             EEEEEecCC-------hhhcCcccccccccceEEecCCCCHHH
Confidence            788999998       6679999998  899999999998765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=99.84  E-value=2.2e-23  Score=167.24  Aligned_cols=173  Identities=27%  Similarity=0.348  Sum_probs=113.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++.+++.+.+.+.. +.....+...+... ..++||+||||||||++|+++++.++.+++.+++..+.. .|.|.
T Consensus        11 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~-~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~-~~~~~   87 (268)
T 2r62_A           11 KDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKI-PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIE-MFVGL   87 (268)
T ss_dssp             TTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCC-CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTT-SCSSS
T ss_pred             HHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCC-CceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHH-hhcch
Confidence            4579999999999886642 22222222223322 347999999999999999999999999999999987764 35554


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC--CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS--GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~--~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                      .. ..+..+|..+    ....++||||||+|.+...+....  ..+.....+++.|+..+++...            ...
T Consensus        88 ~~-~~~~~~~~~a----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~------------~~~  150 (268)
T 2r62_A           88 GA-SRVRDLFETA----KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS------------ENA  150 (268)
T ss_dssp             CS-SSSSTTHHHH----HHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC------------SCS
T ss_pred             HH-HHHHHHHHHH----HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc------------CCC
Confidence            31 1122333332    234679999999999987653211  1111112245566666664321            112


Q ss_pred             ceeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         163 QVFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       163 ~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++++|+|||.       ++.++++++|  ||+..+.++.|+.++
T Consensus       151 ~v~vi~ttn~-------~~~ld~~l~r~~Rf~~~i~i~~p~~~~  187 (268)
T 2r62_A          151 PVIVLAATNR-------PEILDPALMRPGRFDRQVLVDKPDFNG  187 (268)
T ss_dssp             CCEEEECBSC-------CTTSCGGGGSSSSSCCCCBCCCCCTTT
T ss_pred             CEEEEEecCC-------chhcCHhHcCCCCCCeEEEecCcCHHH
Confidence            2889999998       6678999999  999889999998876

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=99.81  E-value=2.4e-20  Score=152.28  Aligned_cols=172  Identities=17%  Similarity=0.220  Sum_probs=116.0

Q ss_pred             CcceeechhhHHhhheeeeEeccc-ceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccC
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYK-RLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDAT   74 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~   74 (225)
                      |++.|+|++++++.+.+.+..... ......+.....+..++||+||||||||++|+++++.+       ..+++.+++.
T Consensus        29 l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~  108 (309)
T 3syl_A           29 LDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD  108 (309)
T ss_dssp             HHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG
T ss_pred             HHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH
Confidence            455789999999999887643321 00000011112334579999999999999999999988       3489999998


Q ss_pred             cccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          75 SFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        75 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                      .+.. .|.|.. ...+...+..       ..++||||||+|.+...++.    ......+++.|++.|+...        
T Consensus       109 ~l~~-~~~g~~-~~~~~~~~~~-------~~~~vl~iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~~~~--------  167 (309)
T 3syl_A          109 DLVG-QYIGHT-APKTKEVLKR-------AMGGVLFIDEAYYLYRPDNE----RDYGQEAIEILLQVMENNR--------  167 (309)
T ss_dssp             GTCC-SSTTCH-HHHHHHHHHH-------HTTSEEEEETGGGSCCCC-------CCTHHHHHHHHHHHHHCT--------
T ss_pred             Hhhh-hccccc-HHHHHHHHHh-------cCCCEEEEEChhhhccCCCc----ccccHHHHHHHHHHHhcCC--------
Confidence            8864 566765 3334445443       36789999999999855421    2234568899999998632        


Q ss_pred             ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                           .+  +++|.++|....  ..+..+++++++||+..+.|+.|+.+.
T Consensus       168 -----~~--~~~i~~~~~~~~--~~~~~~~~~l~~R~~~~i~~~~~~~~~  208 (309)
T 3syl_A          168 -----DD--LVVILAGYADRM--ENFFQSNPGFRSRIAHHIEFPDYSDEE  208 (309)
T ss_dssp             -----TT--CEEEEEECHHHH--HHHHHHSTTHHHHEEEEEEECCCCHHH
T ss_pred             -----CC--EEEEEeCChHHH--HHHHhhCHHHHHhCCeEEEcCCcCHHH
Confidence                 12  677777765100  001134689999999889999999866

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=99.81  E-value=6e-21  Score=167.14  Aligned_cols=186  Identities=19%  Similarity=0.218  Sum_probs=112.2

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc---
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA---   79 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~---   79 (225)
                      |++.++|++++++.+.+.+..        ...+...+...++|+||||||||++|+++++.++.++..+++..+...   
T Consensus        79 l~~di~G~~~vk~~i~~~~~l--------~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~  150 (543)
T 3m6a_A           79 LDEEHHGLEKVKERILEYLAV--------QKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI  150 (543)
T ss_dssp             HHHHCSSCHHHHHHHHHHHHH--------HHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred             HHHHhccHHHHHHHHHHHHHH--------HHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence            566789999999888664421        111222345578899999999999999999999999999988765321   


Q ss_pred             -----CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc-cc-
Q psy5910          80 -----GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT-SL-  152 (225)
Q Consensus        80 -----~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~-~~-  152 (225)
                           .|.|.. ...+...+..+     ...++|+||||++++.+.+..         ..++.|++.|+......- .. 
T Consensus       151 ~g~~~~~ig~~-~~~~~~~~~~a-----~~~~~vl~lDEid~l~~~~~~---------~~~~~LL~~ld~~~~~~~~~~~  215 (543)
T 3m6a_A          151 RGHRRTYVGAM-PGRIIQGMKKA-----GKLNPVFLLDEIDKMSSDFRG---------DPSSAMLEVLDPEQNSSFSDHY  215 (543)
T ss_dssp             --------------CHHHHHHTT-----CSSSEEEEEEESSSCC------------------CCGGGTCTTTTTBCCCSS
T ss_pred             hhHHHHHhccC-chHHHHHHHHh-----hccCCEEEEhhhhhhhhhhcc---------CHHHHHHHHHhhhhcceeeccc
Confidence                 233332 11222233332     224569999999999876422         156889999985432211 11 


Q ss_pred             ccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc--chhcccCChhHHHHccC
Q psy5910         153 AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN--YNLICETNTEDLINFGI  221 (225)
Q Consensus       153 ~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~--~~l~~~~~~~~l~~~~~  221 (225)
                      .....+..+  +++|+|+|.       ...+++++++||+ .|.|+.|+.++  +.+..++.+..+.+.++
T Consensus       216 ~~~~~~~~~--v~iI~ttN~-------~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~  276 (543)
T 3m6a_A          216 IEETFDLSK--VLFIATANN-------LATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGL  276 (543)
T ss_dssp             SCCCCBCSS--CEEEEECSS-------TTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTC
T ss_pred             CCeeecccc--eEEEeccCc-------cccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            111111223  788888888       6689999999995 58888888765  55555554544444443

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=99.81  E-value=6e-21  Score=151.93  Aligned_cols=172  Identities=23%  Similarity=0.353  Sum_probs=119.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.++|+++++..+...+. .+.....+.+.++..+. +++|+||||||||++++++++.++.+++.+++.++.. .+.+.
T Consensus        16 ~~i~g~~~~~~~l~~l~~-~~~~~~~~~~~~~~~~~-g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~-~~~~~   92 (254)
T 1ixz_A           16 KDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-MFVGV   92 (254)
T ss_dssp             GGCCSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCS-EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH-SCTTH
T ss_pred             HHhCCcHHHHHHHHHHHH-HHHCHHHHHHcCCCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH-HHhhH
Confidence            357999999988877543 34444455666666555 5999999999999999999999999999998877643 23333


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...+..+|+.+    ....++++++||+|.+...+.... .......+..+.++..|++....           ..  
T Consensus        93 ~-~~~i~~~~~~~----~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~-----------~~--  154 (254)
T 1ixz_A           93 G-AARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD-----------TA--  154 (254)
T ss_dssp             H-HHHHHHHHHHH----TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT-----------CC--
T ss_pred             H-HHHHHHHHHHH----HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC-----------CC--
Confidence            2 34455566553    224578999999999986653211 11122234567777777754211           11  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++++++|.       ++.+|++++|  ||+..+.++.|+.++
T Consensus       155 ~i~~a~t~~-------p~~ld~~l~r~~rf~~~i~i~~p~~~~  190 (254)
T 1ixz_A          155 IVVMAATNR-------PDILDPALLRPGRFDRQIAIDAPDVKG  190 (254)
T ss_dssp             EEEEEEESC-------GGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred             EEEEEccCC-------chhCCHHHcCCCcCCeEEeeCCcCHHH
Confidence            788888888       6789999998  899999999998765

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=99.80  E-value=3.1e-21  Score=165.91  Aligned_cols=168  Identities=13%  Similarity=0.165  Sum_probs=110.4

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcccccCc
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTEAGY   81 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~~~~~   81 (225)
                      .+.++||+++++.+...+.....+.         .+++++||+||||||||++|+++|+.++  .+++.++++.+.. .|
T Consensus        36 ~~~iiG~~~~~~~l~~~~~~~~~~~---------~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~-~~  105 (456)
T 2c9o_A           36 ASGLVGQENAREACGVIVELIKSKK---------MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS-TE  105 (456)
T ss_dssp             ETTEESCHHHHHHHHHHHHHHHTTC---------CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC-SS
T ss_pred             hhhccCHHHHHHHHHHHHHHHHhCC---------CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH-Hh
Confidence            3678999999998776553222111         3446899999999999999999999998  8999999998874 57


Q ss_pred             cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCC-----------------hHHHHHHHHHHHhc
Q psy5910          82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVS-----------------GEGVQQSLLKLIEG  144 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~-----------------~~~~~~~Ll~~l~~  144 (225)
                      .|.. +. +...|..+.+ .+...++||||||+|++.+.+.........                 ..++.+.++..|+.
T Consensus       106 ~~~~-~~-~~~~f~~a~~-~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~  182 (456)
T 2c9o_A          106 IKKT-EV-LMENFRRAIG-LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK  182 (456)
T ss_dssp             SCHH-HH-HHHHHHHTEE-EEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred             hhhh-HH-HHHHHHHHHh-hhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence            7764 33 6777776532 234578999999999999887543210000                 00122335555542


Q ss_pred             CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHh--hcccc--cccccccc
Q psy5910         145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIIN--RINQE--TNFLEKLN  202 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~--i~~~~~~~  202 (225)
                      ....         ...  .+++++|||.       ++.+|+++.|  ||++.  +.++.|+.
T Consensus       183 ~~~~---------~~~--~v~i~attn~-------~~~ld~a~~r~~rfd~~~~~~v~~p~~  226 (456)
T 2c9o_A          183 ERVE---------AGD--VIYIEANSGA-------VKRQGRCDTYATEFDLEAEEYVPLPKG  226 (456)
T ss_dssp             TTCC---------TTE--EEEEETTTCC-------EEEEEEETTSCCTTSCSSSSEECCCCS
T ss_pred             ccCC---------CCC--EEEEEcCCCC-------cccCChhhcCCcccCcceeEecCCCch
Confidence            2111         111  1566688888       5688888876  99994  66677754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=99.80  E-value=1.6e-19  Score=149.34  Aligned_cols=157  Identities=23%  Similarity=0.281  Sum_probs=110.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.++|++++++.+...+......         ..+..++||+||||||||++|+++++.++.+++.+++..+..      
T Consensus        29 ~~iiG~~~~~~~l~~~l~~~~~~---------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~------   93 (338)
T 3pfi_A           29 DGYIGQESIKKNLNVFIAAAKKR---------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK------   93 (338)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHT---------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS------
T ss_pred             HHhCChHHHHHHHHHHHHHHHhc---------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc------
Confidence            35799999999988877332110         023358999999999999999999999999999999876532      


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc---ccCCCCC
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE---KKNPSQN  161 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~---~~~~~~~  161 (225)
                        ...+...+..      ...+++|||||++.+.+.             .++.|+..|+......-...+   .......
T Consensus        94 --~~~~~~~~~~------~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  152 (338)
T 3pfi_A           94 --SGDLAAILTN------LSEGDILFIDEIHRLSPA-------------IEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL  152 (338)
T ss_dssp             --HHHHHHHHHT------CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred             --hhHHHHHHHh------ccCCCEEEEechhhcCHH-------------HHHHHHHHHHhccchhhcccCccccceecCC
Confidence              2223333332      257899999999999866             789999999875432211000   0001111


Q ss_pred             CceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +.+++|++||.       ...+++++++||+..+.++.|+.+.
T Consensus       153 ~~~~~i~atn~-------~~~l~~~L~~R~~~~i~l~~~~~~e  188 (338)
T 3pfi_A          153 PKFTLIGATTR-------AGMLSNPLRDRFGMQFRLEFYKDSE  188 (338)
T ss_dssp             CCCEEEEEESC-------GGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred             CCeEEEEeCCC-------ccccCHHHHhhcCEEeeCCCcCHHH
Confidence            12788888887       5578999999998888888887665

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.79  E-value=3.1e-20  Score=168.76  Aligned_cols=173  Identities=22%  Similarity=0.256  Sum_probs=117.8

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc---
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA---   79 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~---   79 (225)
                      |.+.++||+++++.+..++.....+....     ..+.+++||+||||||||++|+++++.++.+++.++++.+.+.   
T Consensus       456 l~~~v~g~~~~~~~l~~~i~~~~~g~~~~-----~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~  530 (758)
T 1r6b_X          456 LKMLVFGQDKAIEALTEAIKMARAGLGHE-----HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTV  530 (758)
T ss_dssp             HTTTSCSCHHHHHHHHHHHHHHHTTCSCT-----TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCC
T ss_pred             HHhhccCHHHHHHHHHHHHHHHhcccCCC-----CCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhH
Confidence            56778999999999888774332221110     1233479999999999999999999999999999999877431   


Q ss_pred             --------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccc
Q psy5910          80 --------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITS  151 (225)
Q Consensus        80 --------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~  151 (225)
                              +|.|.+....+...+       ....++|+||||++++.+.             +++.|+++|+......  
T Consensus       531 ~~l~g~~~g~~g~~~~~~l~~~~-------~~~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~~~~~~--  588 (758)
T 1r6b_X          531 SRLIGAPPGYVGFDQGGLLTDAV-------IKHPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLTD--  588 (758)
T ss_dssp             SSSCCCCSCSHHHHHTTHHHHHH-------HHCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEE--
T ss_pred             hhhcCCCCCCcCccccchHHHHH-------HhCCCcEEEEeCccccCHH-------------HHHHHHHHhcCcEEEc--
Confidence                    244432222222222       3346899999999999877             8999999999754332  


Q ss_pred             cccccCCCCCCceeEEecCccee--ec------cCc----------cccHHHHHHhhcccccccccccccc
Q psy5910         152 LAEKKNPSQNPQVFNIDTTNILF--IA------GGA----------FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       152 ~~~~~~~~~~~~~~~i~ttn~~~--i~------~~~----------~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ..++..+..+  +++|+|||..-  +.      +..          ...+++++++||+..+.|++++.+.
T Consensus       589 ~~g~~~~~~~--~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~  657 (758)
T 1r6b_X          589 NNGRKADFRN--VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDV  657 (758)
T ss_dssp             TTTEEEECTT--EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHH
T ss_pred             CCCCEEecCC--eEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHH
Confidence            2233333344  78888888621  00      000          0146788999998889999988865

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=99.78  E-value=5.5e-20  Score=148.31  Aligned_cols=172  Identities=23%  Similarity=0.353  Sum_probs=117.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++++.+...+. .+.....+.+.++..+. +++|+||||||||+++++++..++.+++.+++.++.. .+.+.
T Consensus        40 ~~i~g~~~~~~~l~~l~~-~~~~~~~l~~~~~~~~~-gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~-~~~~~  116 (278)
T 1iy2_A           40 KDVAGAEEAKEELKEIVE-FLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-MFVGV  116 (278)
T ss_dssp             GGSSSCHHHHHHHHHHHH-HHHCHHHHHHTTCCCCC-EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH-STTTH
T ss_pred             HHhCChHHHHHHHHHHHH-HHHCHHHHHHcCCCCCC-eEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH-HHhhH
Confidence            457999999988877543 34444455566666555 5999999999999999999999999999998877643 23333


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...+..+|+.+    ....++++++||++.+...+.... ..........+.++..|++...           ...  
T Consensus       117 ~-~~~i~~~~~~~----~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~-----------~~~--  178 (278)
T 1iy2_A          117 G-AARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-----------DTA--  178 (278)
T ss_dssp             H-HHHHHHHHHHH----HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT-----------TCC--
T ss_pred             H-HHHHHHHHHHH----HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC-----------CCC--
Confidence            2 33455566553    224678999999999876543211 0111123344556666664321           111  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++++++|.       ++.+|++++|  ||+..+.++.|+.++
T Consensus       179 ~i~~a~t~~-------p~~ld~~l~r~~rf~~~i~i~~p~~~~  214 (278)
T 1iy2_A          179 IVVMAATNR-------PDILDPALLRPGRFDRQIAIDAPDVKG  214 (278)
T ss_dssp             EEEEEEESC-------TTSSCHHHHSTTSSCCEEECCCCCHHH
T ss_pred             EEEEEecCC-------chhCCHhHcCCCcCCeEEEeCCcCHHH
Confidence            788888888       6789999998  899999999998765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.77  E-value=2.9e-19  Score=162.41  Aligned_cols=170  Identities=23%  Similarity=0.263  Sum_probs=113.5

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA   79 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~   79 (225)
                      |.+.|+||+++++.+..++..........     ..+.+++||+||||||||++|+++|+.+   +.+++.++++.+.+.
T Consensus       489 l~~~viGq~~a~~~l~~~i~~~~~~~~~~-----~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~  563 (758)
T 3pxi_A          489 LHSRVIGQDEAVVAVAKAVRRARAGLKDP-----KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK  563 (758)
T ss_dssp             HHTTSCSCHHHHHHHHHHHHHHTTTCSCT-----TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred             HhCcCcChHHHHHHHHHHHHHHHcccCCC-----CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence            45678999999999988874433221110     1222369999999999999999999998   688999999888652


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                       +...  ...+...+       ....++||||||++++.+.             +++.|+++|+......  .+++..+.
T Consensus       564 -~~~~--~~~l~~~~-------~~~~~~vl~lDEi~~~~~~-------------~~~~Ll~~le~g~~~~--~~g~~~~~  618 (758)
T 3pxi_A          564 -HSTS--GGQLTEKV-------RRKPYSVVLLDAIEKAHPD-------------VFNILLQVLEDGRLTD--SKGRTVDF  618 (758)
T ss_dssp             -CCCC-----CHHHH-------HHCSSSEEEEECGGGSCHH-------------HHHHHHHHHHHSBCC-------CCBC
T ss_pred             -cccc--cchhhHHH-------HhCCCeEEEEeCccccCHH-------------HHHHHHHHhccCeEEc--CCCCEecc
Confidence             3222  11122222       3346789999999999877             8999999999754432  33444444


Q ss_pred             CCCceeEEecCcceeeccC-----ccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGG-----AFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~-----~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+  +++|+|||...-...     -...+.+.+++||+..+.|++++.+.
T Consensus       619 ~~--~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~  666 (758)
T 3pxi_A          619 RN--TILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKH  666 (758)
T ss_dssp             TT--CEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHH
T ss_pred             CC--eEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHH
Confidence            55  788888885210000     01126788999998889999998865

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=99.76  E-value=1.8e-19  Score=147.22  Aligned_cols=173  Identities=25%  Similarity=0.327  Sum_probs=108.8

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA   79 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~   79 (225)
                      |.+.++||+.+++.+...+..........     ..+..++||+||||||||++|+++++.+   +.+++.+++..+...
T Consensus        15 l~~~i~G~~~~~~~l~~~i~~~~~~~~~~-----~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~   89 (311)
T 4fcw_A           15 LHKRVVGQDEAIRAVADAIRRARAGLKDP-----NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEK   89 (311)
T ss_dssp             HHTTCCSCHHHHHHHHHHHHHHHHTCSCT-----TSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCST
T ss_pred             HhhhcCCHHHHHHHHHHHHHHHhcCCCCC-----CCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccccc
Confidence            56778999999999988774332211100     1223478999999999999999999998   556899988766431


Q ss_pred             -----------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910          80 -----------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS  148 (225)
Q Consensus        80 -----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~  148 (225)
                                 ++.|......+...+       ....++++||||++++.+.             +++.|+++|+.....
T Consensus        90 ~~~~~l~g~~~~~~~~~~~~~~~~~~-------~~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~le~~~~~  149 (311)
T 4fcw_A           90 HAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDAIEKAHPD-------------VFNILLQMLDDGRLT  149 (311)
T ss_dssp             THHHHHHCCCTTSTTTTTCCHHHHHH-------HHCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEE
T ss_pred             ccHHHhcCCCCccccccccchHHHHH-------HhCCCeEEEEeChhhcCHH-------------HHHHHHHHHhcCEEE
Confidence                       111211111122221       2345689999999999876             899999999865432


Q ss_pred             ccccccccCCCCCCceeEEecCccee--ecc-----Cc------------cccHHHHHHhhcccccccccccccc
Q psy5910         149 ITSLAEKKNPSQNPQVFNIDTTNILF--IAG-----GA------------FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~i~ttn~~~--i~~-----~~------------~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ..  .+...+..+  .++|+|||...  +..     ..            ...+++++++||+..+.|++|+.+.
T Consensus       150 ~~--~~~~~~~~~--~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~  220 (311)
T 4fcw_A          150 DS--HGRTVDFRN--TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ  220 (311)
T ss_dssp             CT--TSCEEECTT--EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHH
T ss_pred             cC--CCCEEECCC--cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHH
Confidence            11  111111122  55666666610  000     00            1246778889998888888888765

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=99.75  E-value=4.5e-19  Score=129.50  Aligned_cols=111  Identities=14%  Similarity=0.182  Sum_probs=81.3

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCcc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~   82 (225)
                      .++|++.+++.+.+.+...            .....+|||+||||||||++|+++++..   +.+++ ++|..+.+.   
T Consensus         2 ~iiG~s~~~~~~~~~~~~~------------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~---   65 (145)
T 3n70_A            2 ELIGRSEWINQYRRRLQQL------------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA---   65 (145)
T ss_dssp             --CCSSHHHHHHHHHHHHH------------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS---
T ss_pred             CceeCCHHHHHHHHHHHHH------------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc---
Confidence            5789999988888766221            1234589999999999999999999987   67899 999876542   


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                       ..    ....+       ....++++||||++.+.+.             .|..|+.+|+...             .+ 
T Consensus        66 -~~----~~~~~-------~~a~~g~l~ldei~~l~~~-------------~q~~Ll~~l~~~~-------------~~-  106 (145)
T 3n70_A           66 -PQ----LNDFI-------ALAQGGTLVLSHPEHLTRE-------------QQYHLVQLQSQEH-------------RP-  106 (145)
T ss_dssp             -SC----HHHHH-------HHHTTSCEEEECGGGSCHH-------------HHHHHHHHHHSSS-------------CS-
T ss_pred             -hh----hhcHH-------HHcCCcEEEEcChHHCCHH-------------HHHHHHHHHhhcC-------------CC-
Confidence             11    11222       2346789999999999877             7899999995422             12 


Q ss_pred             ceeEEecCcc
Q psy5910         163 QVFNIDTTNI  172 (225)
Q Consensus       163 ~~~~i~ttn~  172 (225)
                       +.+|++||.
T Consensus       107 -~~~I~~t~~  115 (145)
T 3n70_A          107 -FRLIGIGDT  115 (145)
T ss_dssp             -SCEEEEESS
T ss_pred             -EEEEEECCc
Confidence             778888887

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=99.73  E-value=5.4e-18  Score=136.14  Aligned_cols=166  Identities=17%  Similarity=0.173  Sum_probs=105.3

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      +...++|++.+.+.+..............   . ..+..++||+||||||||++|+++++.++.+++.+++.+.    +.
T Consensus        31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~-~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~----~~  102 (272)
T 1d2n_A           31 IMNGIIKWGDPVTRVLDDGELLVQQTKNS---D-RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDK----MI  102 (272)
T ss_dssp             CTTCCCCCSHHHHHHHHHHHHHHHHHHHC---S-SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGG----CT
T ss_pred             HhcCCCCccHHHHHHHHHHHHHHHHHhcc---C-CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHH----hc
Confidence            34567888877766655311111111000   0 1233589999999999999999999999999999987652    44


Q ss_pred             CCcHH---HHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          83 GDDVE---SIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        83 g~~~~---~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                      |....   ..+...+..+    ....+++|||||+|.+...+...   ......+++.|...++....            
T Consensus       103 g~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~---~~~~~~~l~~L~~~~~~~~~------------  163 (272)
T 1d2n_A          103 GFSETAKCQAMKKIFDDA----YKSQLSCVVVDDIERLLDYVPIG---PRFSNLVLQALLVLLKKAPP------------  163 (272)
T ss_dssp             TCCHHHHHHHHHHHHHHH----HTSSEEEEEECCHHHHTTCBTTT---TBCCHHHHHHHHHHTTCCCS------------
T ss_pred             CCchHHHHHHHHHHHHHH----HhcCCcEEEEEChhhhhccCCCC---hhHHHHHHHHHHHHhcCccC------------
Confidence            44322   2334444432    23468999999999996543211   11223466666666664210            


Q ss_pred             CCCceeEEecCcceeeccCccccHHH-HHHhhcccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIEN-FIINRINQETNFLEKLN  202 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~-al~~Rf~~~i~~~~~~~  202 (225)
                      ...++++|+|||.       ++.+++ .+++||+..+.+|.+..
T Consensus       164 ~~~~~~ii~ttn~-------~~~l~~~~l~~rf~~~i~~p~l~~  200 (272)
T 1d2n_A          164 QGRKLLIIGTTSR-------KDVLQEMEMLNAFSTTIHVPNIAT  200 (272)
T ss_dssp             TTCEEEEEEEESC-------HHHHHHTTCTTTSSEEEECCCEEE
T ss_pred             CCCCEEEEEecCC-------hhhcchhhhhcccceEEcCCCccH
Confidence            1122788999988       556888 67889988888887766

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=99.72  E-value=1.8e-19  Score=148.70  Aligned_cols=160  Identities=19%  Similarity=0.253  Sum_probs=103.5

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc-cccCc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF-TEAGY   81 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~-~~~~~   81 (225)
                      +.+.++|++++++.+..++                ....++||+||||||||++|+++++.++.+++.+++..- ....+
T Consensus        25 ~~~~i~g~~~~~~~l~~~l----------------~~~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l   88 (331)
T 2r44_A           25 VGKVVVGQKYMINRLLIGI----------------CTGGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDL   88 (331)
T ss_dssp             HTTTCCSCHHHHHHHHHHH----------------HHTCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHH
T ss_pred             hccceeCcHHHHHHHHHHH----------------HcCCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhc
Confidence            4567899999999988776                334699999999999999999999999999998887421 10001


Q ss_pred             cCCcHHHHHHHHHHhcchhh----hhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910          82 VGDDVESIIQKLLHECDYDV----ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN  157 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~----~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~  157 (225)
                      .|...       +....+..    .....+|+||||++.+.+.             .++.|++.|+.....+..  ....
T Consensus        89 ~g~~~-------~~~~~~~~~~~~g~l~~~vl~iDEi~~~~~~-------------~~~~Ll~~l~~~~~~~~g--~~~~  146 (331)
T 2r44_A           89 IGTMI-------YNQHKGNFEVKKGPVFSNFILADEVNRSPAK-------------VQSALLECMQEKQVTIGD--TTYP  146 (331)
T ss_dssp             HEEEE-------EETTTTEEEEEECTTCSSEEEEETGGGSCHH-------------HHHHHHHHHHHSEEEETT--EEEE
T ss_pred             CCcee-------ecCCCCceEeccCcccccEEEEEccccCCHH-------------HHHHHHHHHhcCceeeCC--EEEE
Confidence            11100       00000000    0112479999999998866             789999999875443321  1111


Q ss_pred             CCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ...+  +++++|+|..-. .+ ...+++++++||+..+.++.|+.+.
T Consensus       147 ~~~~--~~viat~np~~~-~~-~~~l~~~l~~Rf~~~i~i~~p~~~~  189 (331)
T 2r44_A          147 LDNP--FLVLATQNPVEQ-EG-TYPLPEAQVDRFMMKIHLTYLDKES  189 (331)
T ss_dssp             CCSS--CEEEEEECTTCC-SC-CCCCCHHHHTTSSEEEECCCCCHHH
T ss_pred             CCCC--EEEEEecCCCcc-cC-cccCCHHHHhheeEEEEcCCCCHHH
Confidence            1122  677777775210 00 1148999999998777777776554

>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}

Probab=99.71  E-value=9e-20  Score=161.11  Aligned_cols=173  Identities=18%  Similarity=0.184  Sum_probs=104.0

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      +...|+|++++++.+..++..  +..+...+ .......++||+||||||||++|+++|+.++...+..... ....++.
T Consensus       293 l~~~I~G~e~vk~al~~~l~~--g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~-~~~~~l~  368 (595)
T 3f9v_A          293 IAPSIYGHWELKEALALALFG--GVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKG-STAAGLT  368 (595)
T ss_dssp             TSSTTSCCHHHHHHHTTTTTC--CCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTC-STTTTSE
T ss_pred             hcchhcChHHHHHHHHHHHhC--CCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCc-ccccccc
Confidence            456789999999888665521  11111222 2222334899999999999999999999987654442110 1111121


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                      +..........+....+.+..+.++|+||||++++.+.             .++.|+++|+.....+...+.......+ 
T Consensus       369 ~~~~~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~~~-------------~q~~Ll~~le~~~i~i~~~g~~~~~~~~-  434 (595)
T 3f9v_A          369 AAVVREKGTGEYYLEAGALVLADGGIAVIDEIDKMRDE-------------DRVAIHEAMEQQTVSIAKAGIVAKLNAR-  434 (595)
T ss_dssp             EECSSGGGTSSCSEEECHHHHHSSSEECCTTTTCCCSH-------------HHHHHHHHHHSSSEEEESSSSEEEECCC-
T ss_pred             ceeeeccccccccccCCeeEecCCCcEEeehhhhCCHh-------------HhhhhHHHHhCCEEEEecCCcEEEecCc-
Confidence            11100000011111123344567899999999999877             7999999999866554333322222233 


Q ss_pred             ceeEEecCcceeeccCcc------ccHHHHHHhhcccc
Q psy5910         163 QVFNIDTTNILFIAGGAF------SGIENFIINRINQE  194 (225)
Q Consensus       163 ~~~~i~ttn~~~i~~~~~------~~l~~al~~Rf~~~  194 (225)
                       +.+|+|+|..+-.....      -.+++++++|||..
T Consensus       435 -~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~  471 (595)
T 3f9v_A          435 -AAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLI  471 (595)
T ss_dssp             -CEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCC
T ss_pred             -eEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEE
Confidence             88999999852100000      17899999999865

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=99.71  E-value=2.4e-18  Score=125.32  Aligned_cols=136  Identities=15%  Similarity=0.187  Sum_probs=93.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      -.++|++++++.+.+.+....            ....+|||+||||||||++|+++++..+ +++.++|..+... +   
T Consensus         4 ~~~iG~s~~~~~l~~~~~~~~------------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~-~---   66 (143)
T 3co5_A            4 FDKLGNSAAIQEMNREVEAAA------------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLID-M---   66 (143)
T ss_dssp             ----CCCHHHHHHHHHHHHHH------------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHH-C---
T ss_pred             cCceeCCHHHHHHHHHHHHHh------------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChH-h---
Confidence            357899999988888763211            2345899999999999999999999887 8999998776431 1   


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                           ....+..       ..++++||||++.+...             .|..|+++|+...            ..+  +
T Consensus        67 -----~~~~~~~-------a~~~~l~lDei~~l~~~-------------~q~~Ll~~l~~~~------------~~~--~  107 (143)
T 3co5_A           67 -----PMELLQK-------AEGGVLYVGDIAQYSRN-------------IQTGITFIIGKAE------------RCR--V  107 (143)
T ss_dssp             -----HHHHHHH-------TTTSEEEEEECTTCCHH-------------HHHHHHHHHHHHT------------TTT--C
T ss_pred             -----hhhHHHh-------CCCCeEEEeChHHCCHH-------------HHHHHHHHHHhCC------------CCC--E
Confidence                 2233332       46789999999999876             7889999998531            122  7


Q ss_pred             eEEecCcceeeccCccccHHHHHHhhcccc-cccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIINRINQE-TNFL  198 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~  198 (225)
                      .+|+|||...-.. ... +++.+..||... |..|
T Consensus       108 ~iI~~tn~~~~~~-~~~-~~~~L~~rl~~~~i~lP  140 (143)
T 3co5_A          108 RVIASCSYAAGSD-GIS-CEEKLAGLFSESVVRIP  140 (143)
T ss_dssp             EEEEEEEECTTTC---C-HHHHHHHHSSSEEEEEC
T ss_pred             EEEEecCCCHHHH-HhC-ccHHHHHHhcCcEEeCC
Confidence            8888888743221 122 777888886544 5544

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=99.71  E-value=1.5e-17  Score=138.90  Aligned_cols=161  Identities=16%  Similarity=0.233  Sum_probs=98.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCccccc---
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEA---   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~---   79 (225)
                      +.++|++.+++.+...+......         ..+..++||+||||||||++|+++++.++.  +++.+++..+...   
T Consensus        44 ~~ivG~~~~~~~l~~l~~~~~~~---------~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  114 (368)
T 3uk6_A           44 QGMVGQLAARRAAGVVLEMIREG---------KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMS  114 (368)
T ss_dssp             TTEESCHHHHHHHHHHHHHHHTT---------CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSC
T ss_pred             hhccChHHHHHHHHHHHHHHHcC---------CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccc
Confidence            45799999988754433111111         023358999999999999999999999974  7877776553221   


Q ss_pred             ---------------------------------------------CccCCcHHHHHHHHHHhcchhhhh-----hCCCEE
Q psy5910          80 ---------------------------------------------GYVGDDVESIIQKLLHECDYDVEL-----AEQSII  109 (225)
Q Consensus        80 ---------------------------------------------~~~g~~~~~~~~~~~~~~~~~~~~-----~~~~vl  109 (225)
                                                                   ++.|.. ...++..+..+......     ..++||
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~g~~~~~~~vl  193 (368)
T 3uk6_A          115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEI-KSEVREQINAKVAEWREEGKAEIIPGVL  193 (368)
T ss_dssp             HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC--------CHHHHHHHHHHHHHHHHHTC---CBCEE
T ss_pred             hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCccccc-HHHHHHHHHHHHHHhhhhccccccCceE
Confidence                                                         011110 11122222221110011     125799


Q ss_pred             EEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCccee-eccC---ccccHHH
Q psy5910         110 YIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILF-IAGG---AFSGIEN  185 (225)
Q Consensus       110 ~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~-i~~~---~~~~l~~  185 (225)
                      ||||++.+.+.             .++.|++.++....             .  ++++++.+.+. +.+.   .+..+++
T Consensus       194 ~IDEi~~l~~~-------------~~~~L~~~le~~~~-------------~--~~ii~t~~~~~~i~~t~~~~~~~l~~  245 (368)
T 3uk6_A          194 FIDEVHMLDIE-------------SFSFLNRALESDMA-------------P--VLIMATNRGITRIRGTSYQSPHGIPI  245 (368)
T ss_dssp             EEESGGGSBHH-------------HHHHHHHHTTCTTC-------------C--EEEEEESCSEEECBTSSCEEETTCCH
T ss_pred             EEhhccccChH-------------HHHHHHHHhhCcCC-------------C--eeeeecccceeeeeccCCCCcccCCH
Confidence            99999999866             78999999975321             1  55555554332 2222   2457999


Q ss_pred             HHHhhcccccccccccccc
Q psy5910         186 FIINRINQETNFLEKLNNN  204 (225)
Q Consensus       186 al~~Rf~~~i~~~~~~~~~  204 (225)
                      ++++||.. +.|+.|+.++
T Consensus       246 ~l~sR~~~-i~~~~~~~~e  263 (368)
T 3uk6_A          246 DLLDRLLI-VSTTPYSEKD  263 (368)
T ss_dssp             HHHTTEEE-EEECCCCHHH
T ss_pred             HHHhhccE-EEecCCCHHH
Confidence            99999977 7888887665

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=99.71  E-value=7.9e-18  Score=126.86  Aligned_cols=155  Identities=22%  Similarity=0.293  Sum_probs=95.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~   74 (225)
                      +.++|+++.++.+.+.+..              ...++++|+||||||||++|+++++.+          +.+++.+++.
T Consensus        22 ~~~~g~~~~~~~l~~~l~~--------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (187)
T 2p65_A           22 DPVIGRDTEIRRAIQILSR--------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS   87 (187)
T ss_dssp             CCCCSCHHHHHHHHHHHTS--------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred             chhhcchHHHHHHHHHHhC--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence            3578999988888776611              223588999999999999999999987          6667777765


Q ss_pred             ccccc-CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          75 SFTEA-GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        75 ~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      .+... .+.+. ....+..++...   .....+.+++|||++.+...+....    ....+.+.|...++...       
T Consensus        88 ~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~vl~iDe~~~l~~~~~~~~----~~~~~~~~l~~~~~~~~-------  152 (187)
T 2p65_A           88 SLIAGAKYRGD-FEERLKSILKEV---QDAEGQVVMFIDEIHTVVGAGAVAE----GALDAGNILKPMLARGE-------  152 (187)
T ss_dssp             HHHHHCCSHHH-HHHHHHHHHHHH---HHTTTSEEEEETTGGGGSSSSSSCT----TSCCTHHHHHHHHHTTC-------
T ss_pred             HhhcCCCchhH-HHHHHHHHHHHH---HhcCCceEEEEeCHHHhcccccccc----cchHHHHHHHHHHhcCC-------
Confidence            54321 12221 122233333322   0112567999999999985532110    01125667777776421       


Q ss_pred             cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL  201 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~  201 (225)
                                +.+|+++|..-..  ....+++++++||.. +.++.|+
T Consensus       153 ----------~~ii~~~~~~~~~--~~~~~~~~l~~R~~~-i~i~~p~  187 (187)
T 2p65_A          153 ----------LRCIGATTVSEYR--QFIEKDKALERRFQQ-ILVEQPS  187 (187)
T ss_dssp             ----------SCEEEEECHHHHH--HHTTTCHHHHHHEEE-EECCSCC
T ss_pred             ----------eeEEEecCHHHHH--HHHhccHHHHHhcCc-ccCCCCC
Confidence                      6677777761100  001478999999985 7776664

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=99.71  E-value=3.1e-18  Score=141.97  Aligned_cols=163  Identities=15%  Similarity=0.207  Sum_probs=95.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeE----EeccCcccccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPII----VVDATSFTEAG   80 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~----~~~~~~~~~~~   80 (225)
                      +.++|++++++.+...+.              ....+++||+||||||||++|+++++.++....    .++|.......
T Consensus        24 ~~i~G~~~~~~~l~~~~~--------------~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~   89 (350)
T 1g8p_A           24 SAIVGQEDMKLALLLTAV--------------DPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIP   89 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHH--------------CGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSC
T ss_pred             hhccChHHHHHHHHHHhh--------------CCCCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccccc
Confidence            347999988776544331              012357999999999999999999998863110    01222111000


Q ss_pred             ----------------c----cCCcHHHHH-----HHHHHhc-----chhhhhhCCCEEEEcchhhhcccccccCCCCCC
Q psy5910          81 ----------------Y----VGDDVESII-----QKLLHEC-----DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVS  130 (225)
Q Consensus        81 ----------------~----~g~~~~~~~-----~~~~~~~-----~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~  130 (225)
                                      +    .+......+     ...+...     .+.+....++++||||++.+.+.          
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~----------  159 (350)
T 1g8p_A           90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH----------  159 (350)
T ss_dssp             TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH----------
T ss_pred             chhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH----------
Confidence                            0    111111111     1111111     12233456889999999999876          


Q ss_pred             hHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccc
Q psy5910         131 GEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLN  202 (225)
Q Consensus       131 ~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~  202 (225)
                         .++.|+..|+.....+...+.......+  +++|+|+|..      ...+++++++||+..+.++.|..
T Consensus       160 ---~~~~Ll~~le~~~~~~~~~g~~~~~~~~--~~li~~~n~~------~~~l~~~L~~R~~~~~~l~~~~~  220 (350)
T 1g8p_A          160 ---IVDLLLDVAQSGENVVERDGLSIRHPAR--FVLVGSGNPE------EGDLRPQLLDRFGLSVEVLSPRD  220 (350)
T ss_dssp             ---HHHHHHHHHHHSEEEECCTTCCEEEECC--EEEEEEECSC------SCCCCHHHHTTCSEEEECCCCCS
T ss_pred             ---HHHHHHHHHhcCceEEEecceEEeeCCc--eEEEEEeCCC------CCCCCHHHHhhcceEEEcCCCCc
Confidence               7899999998643222222211111112  7788888761      12689999999988788877743

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=99.70  E-value=8.5e-18  Score=127.05  Aligned_cols=156  Identities=19%  Similarity=0.269  Sum_probs=95.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~   74 (225)
                      +.++|+++.++.+...+..              ....+++|+||||||||++|+++++.+          +.+++.+++.
T Consensus        22 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (195)
T 1jbk_A           22 DPVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG   87 (195)
T ss_dssp             CCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred             cccccchHHHHHHHHHHhc--------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH
Confidence            4578999998888776521              123579999999999999999999986          6778888776


Q ss_pred             cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          75 SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        75 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      .+.. ..+.+. ....+..++...   .....+.+++|||++.+........     ...+++.|..+++...       
T Consensus        88 ~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~vl~iDe~~~l~~~~~~~~-----~~~~~~~l~~~~~~~~-------  151 (195)
T 1jbk_A           88 ALVAGAKYRGE-FEERLKGVLNDL---AKQEGNVILFIDELHTMVGAGKADG-----AMDAGNMLKPALARGE-------  151 (195)
T ss_dssp             HHHTTTCSHHH-HHHHHHHHHHHH---HHSTTTEEEEEETGGGGTT-----------CCCCHHHHHHHHHTTS-------
T ss_pred             HHhccCCcccc-HHHHHHHHHHHH---hhcCCCeEEEEeCHHHHhccCcccc-----hHHHHHHHHHhhccCC-------
Confidence            5532 112221 122333333322   1123567999999999975532110     0114666666665321       


Q ss_pred             cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                                +.+|.++|..-..  ....+++++++||. .+.++.|+.+
T Consensus       152 ----------~~~i~~~~~~~~~--~~~~~~~~l~~r~~-~i~~~~p~~~  188 (195)
T 1jbk_A          152 ----------LHCVGATTLDEYR--QYIEKDAALERRFQ-KVFVAEPSVE  188 (195)
T ss_dssp             ----------CCEEEEECHHHHH--HHTTTCHHHHTTEE-EEECCCCCHH
T ss_pred             ----------eEEEEeCCHHHHH--HHHhcCHHHHHHhc-eeecCCCCHH
Confidence                      5666666651100  00156899999997 4777777765

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.69  E-value=1.2e-17  Score=153.45  Aligned_cols=172  Identities=26%  Similarity=0.348  Sum_probs=108.4

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc-
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA-   79 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~-   79 (225)
                      .+.|+||+.+++.+...+.....+...     ...+..++||+||||||||++|+++++.+   +.+++.++|+.+... 
T Consensus       557 ~~~viG~~~a~~~l~~~i~~~~~g~~~-----~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~  631 (854)
T 1qvr_A          557 HKRVVGQDEAIRAVADAIRRARAGLKD-----PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKH  631 (854)
T ss_dssp             HHHSCSCHHHHHHHHHHHHHHGGGCSC-----SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSG
T ss_pred             hcccCCcHHHHHHHHHHHHHHhcccCC-----CCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchh
Confidence            356899999999998877433221100     01223478999999999999999999998   788999999876532 


Q ss_pred             ----------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCc
Q psy5910          80 ----------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSI  149 (225)
Q Consensus        80 ----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~  149 (225)
                                +|.|......+...+       ....++||||||++++.+.             +++.|+++|+..... 
T Consensus       632 ~~s~l~g~~~~~~G~~~~g~l~~~~-------~~~~~~vl~lDEi~~l~~~-------------~~~~Ll~~l~~~~~~-  690 (854)
T 1qvr_A          632 AVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDEIEKAHPD-------------VFNILLQILDDGRLT-  690 (854)
T ss_dssp             GGGGC--------------CHHHHH-------HHCSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEEC-
T ss_pred             HHHHHcCCCCCCcCccccchHHHHH-------HhCCCeEEEEecccccCHH-------------HHHHHHHHhccCceE-
Confidence                      233433212222222       2345789999999999877             899999999975433 


Q ss_pred             cccccccCCCCCCceeEEecCccee--ecc----C-c------------cccHHHHHHhhcccccccccccccc
Q psy5910         150 TSLAEKKNPSQNPQVFNIDTTNILF--IAG----G-A------------FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       150 ~~~~~~~~~~~~~~~~~i~ttn~~~--i~~----~-~------------~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       ...++..+..+  .++|+|||..-  +..    + .            ...+.+.++.||+..+.|.++..+.
T Consensus       691 -~~~g~~vd~~~--~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~ed  761 (854)
T 1qvr_A          691 -DSHGRTVDFRN--TVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQ  761 (854)
T ss_dssp             -CSSSCCEECTT--EEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHH
T ss_pred             -CCCCCEeccCC--eEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHH
Confidence             11222222333  67888888610  000    0 0            0123467778998888887777654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=99.68  E-value=2.3e-17  Score=141.09  Aligned_cols=138  Identities=20%  Similarity=0.293  Sum_probs=91.2

Q ss_pred             eeechhhHH---hhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCcc
Q psy5910           6 HIIGQHETK---KIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         6 ~i~G~~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~   82 (225)
                      .++||++++   ..|...+..              ....++||+||||||||++|++|++.++.+++.+++....     
T Consensus        27 ~ivGq~~~~~~~~~L~~~i~~--------------~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~-----   87 (447)
T 3pvs_A           27 QYIGQQHLLAAGKPLPRAIEA--------------GHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG-----   87 (447)
T ss_dssp             TCCSCHHHHSTTSHHHHHHHH--------------TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC-----
T ss_pred             HhCCcHHHHhchHHHHHHHHc--------------CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC-----
Confidence            468999998   556555511              1114799999999999999999999999999998874431     


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                          ...++..+..+........+++|||||++.+...             .++.|+..|+...                
T Consensus        88 ----~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~-------------~q~~LL~~le~~~----------------  134 (447)
T 3pvs_A           88 ----VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS-------------QQDAFLPHIEDGT----------------  134 (447)
T ss_dssp             ----HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-------------------CCHHHHHTTS----------------
T ss_pred             ----HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH-------------HHHHHHHHHhcCc----------------
Confidence                1223334433322223357899999999999866             6888999998632                


Q ss_pred             ceeEEecC--cceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         163 QVFNIDTT--NILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       163 ~~~~i~tt--n~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       +.+|.+|  |.       ...+++++++|+. .+.++.++.+.
T Consensus       135 -v~lI~att~n~-------~~~l~~aL~sR~~-v~~l~~l~~ed  169 (447)
T 3pvs_A          135 -ITFIGATTENP-------SFELNSALLSRAR-VYLLKSLSTED  169 (447)
T ss_dssp             -CEEEEEESSCG-------GGSSCHHHHTTEE-EEECCCCCHHH
T ss_pred             -eEEEecCCCCc-------ccccCHHHhCcee-EEeeCCcCHHH
Confidence             4444433  44       3478999999986 45566666554

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.68  E-value=1.5e-17  Score=136.54  Aligned_cols=156  Identities=21%  Similarity=0.270  Sum_probs=104.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.++|++.+++.+...+......         .....++||+||||||||++|+++++.++.+++.+++..+..      
T Consensus        12 ~~~ig~~~~~~~l~~~l~~~~~~---------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------   76 (324)
T 1hqc_A           12 DEYIGQERLKQKLRVYLEAAKAR---------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------   76 (324)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHHHH---------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------
T ss_pred             HHhhCHHHHHHHHHHHHHHHHcc---------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------
Confidence            45799999999888766322110         012358999999999999999999999999999998876532      


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc-----ccCCC
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE-----KKNPS  159 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~-----~~~~~  159 (225)
                        ...+...+..     ....++++||||++.+...             .+..|+..|+......-....     ...+.
T Consensus        77 --~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~  136 (324)
T 1hqc_A           77 --PGDLAAILAN-----SLEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLEL  136 (324)
T ss_dssp             --HHHHHHHHTT-----TCCTTCEEEETTTTSCCHH-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred             --hHHHHHHHHH-----hccCCCEEEEECCcccccc-------------hHHHHHHHHHhhhhHHhccccccccccccCC
Confidence              1112222222     1246889999999999866             688899999864321100000     00011


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+  +.+|++||.       ...+++++.+||+..+.++.|+.+.
T Consensus       137 ~~--~~~i~~t~~-------~~~~~~~l~~R~~~~i~l~~~~~~e  172 (324)
T 1hqc_A          137 PR--FTLIGATTR-------PGLITAPLLSRFGIVEHLEYYTPEE  172 (324)
T ss_dssp             CC--CEEEEEESC-------CSSCSCSTTTTCSCEEECCCCCHHH
T ss_pred             CC--EEEEEeCCC-------cccCCHHHHhcccEEEecCCCCHHH
Confidence            12  677777776       4567888899997777777777654

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=99.68  E-value=1.3e-17  Score=144.16  Aligned_cols=161  Identities=15%  Similarity=0.194  Sum_probs=98.6

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcccccC
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTEAG   80 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~~~   80 (225)
                      +.+.|+|++++++.+..++                ....++||+||||||||++|+++|+.++.  ++..+++.......
T Consensus        20 l~~~ivGq~~~i~~l~~al----------------~~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~d   83 (500)
T 3nbx_X           20 LEKGLYERSHAIRLCLLAA----------------LSGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEE   83 (500)
T ss_dssp             HHTTCSSCHHHHHHHHHHH----------------HHTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHH
T ss_pred             HHhhhHHHHHHHHHHHHHH----------------hcCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHH
Confidence            4577899999999988776                45579999999999999999999998843  45555553211111


Q ss_pred             ccCC-cHHHH-HHHHHHhcc-hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910          81 YVGD-DVESI-IQKLLHECD-YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN  157 (225)
Q Consensus        81 ~~g~-~~~~~-~~~~~~~~~-~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~  157 (225)
                      +.|. ..... -...+..+. +.  ...++|+||||++++.+.             +++.|+.+|++....+..   ...
T Consensus        84 L~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~-------------~q~~LL~~lee~~v~i~G---~~~  145 (500)
T 3nbx_X           84 VFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPA-------------ILNTLLTAINERQFRNGA---HVE  145 (500)
T ss_dssp             HHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHH-------------HHHHHHHHHHSSEEECSS---SEE
T ss_pred             hcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHH-------------HHHHHHHHHHHHhccCCC---CcC
Confidence            2221 10100 011111110 11  114679999999998866             899999999875544311   111


Q ss_pred             CCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                      ....  .++|.+||.+-    ......+++++||...+.++.|+.+
T Consensus       146 ~~~~--~~iI~ATN~lp----e~~~~~~aLldRF~~~i~v~~p~~~  185 (500)
T 3nbx_X          146 KIPM--RLLVAASNELP----EADSSLEALYDRMLIRLWLDKVQDK  185 (500)
T ss_dssp             ECCC--CEEEEEESSCC----CTTCTTHHHHTTCCEEEECCSCCCH
T ss_pred             Ccch--hhhhhccccCC----CccccHHHHHHHHHHHHHHHHhhhh
Confidence            1111  24566666411    0123457999999887887777763

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=99.67  E-value=5.8e-17  Score=132.25  Aligned_cols=168  Identities=17%  Similarity=0.237  Sum_probs=100.7

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc-
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA-   79 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~-   79 (225)
                      ++.++|++.+++.+.+.+...            .....+|||+||||||||++|+++++.+   +.+++.++|..+... 
T Consensus         1 ~~~iig~s~~~~~~~~~~~~~------------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l   68 (304)
T 1ojl_A            1 GSHMIGSSPAMQHLLNEIAMV------------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESL   68 (304)
T ss_dssp             --CCCCCSHHHHHHHHHHHHH------------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHH
T ss_pred             CCCcEECCHHHHHHHHHHHHH------------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHH
Confidence            356899999988887766221            1234689999999999999999999976   578999999876321 


Q ss_pred             ---CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          80 ---GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        80 ---~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                         .+.|.... .+........+.+....+++|||||++.+...             .|..|+.+|+.....  ..++..
T Consensus        69 ~~~~lfg~~~g-~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~--~~g~~~  132 (304)
T 1ojl_A           69 LESELFGHEKG-AFTGADKRREGRFVEADGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQ--RVGSNQ  132 (304)
T ss_dssp             HHHHHTCCCSS-CCC---CCCCCHHHHHTTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCC--BTTBCC
T ss_pred             HHHHhcCcccc-ccCchhhhhcCHHHhcCCCEEEEeccccCCHH-------------HHHHHHHHHhcCEee--ecCCcc
Confidence               00111000 00000001112334457899999999999876             799999999875332  222222


Q ss_pred             CCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-ccccccc
Q psy5910         157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKL  201 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~  201 (225)
                      ....+  +.+|++||...-..-....+++.+..||... |.+|+..
T Consensus       133 ~~~~~--~riI~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~  176 (304)
T 1ojl_A          133 TISVD--VRLIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLR  176 (304)
T ss_dssp             CCBCC--CEEEEEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSG
T ss_pred             cccCC--eEEEEecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHH
Confidence            22223  7888888872100000011345666777533 6666554

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=99.66  E-value=1.3e-16  Score=127.49  Aligned_cols=168  Identities=18%  Similarity=0.209  Sum_probs=97.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCccccc--
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSFTEA--   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~~~~--   79 (225)
                      +.++|++.++..+.+.+....            ....++||+||||||||++|+++++.++   .+++.++|+.+...  
T Consensus         6 ~~~ig~~~~~~~~~~~~~~~~------------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~   73 (265)
T 2bjv_A            6 DNLLGEANSFLEVLEQVSHLA------------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL   73 (265)
T ss_dssp             ----CCCHHHHHHHHHHHHHT------------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHH
T ss_pred             ccceeCCHHHHHHHHHHHHHh------------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHH
Confidence            346899998888776552211            1235899999999999999999999874   68999999876321  


Q ss_pred             --CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccC
Q psy5910          80 --GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN  157 (225)
Q Consensus        80 --~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~  157 (225)
                        .+.|.. ............+.+....+++|||||++.+...             +|..|+++|+.....  ..+....
T Consensus        74 ~~~l~g~~-~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~--~~g~~~~  137 (265)
T 2bjv_A           74 DSELFGHE-AGAFTGAQKRHPGRFERADGGTLFLDELATAPMM-------------VQEKLLRVIEYGELE--RVGGSQP  137 (265)
T ss_dssp             HHHHHCCC----------CCCCHHHHTTTSEEEEESGGGSCHH-------------HHHHHHHHHHHCEEC--CCCC--C
T ss_pred             HHHhcCCc-ccccccccccccchhhhcCCcEEEEechHhcCHH-------------HHHHHHHHHHhCCee--cCCCccc
Confidence              011111 0000000011122333456789999999999876             789999999864321  1111111


Q ss_pred             CCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccc
Q psy5910         158 PSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLN  202 (225)
Q Consensus       158 ~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~  202 (225)
                      ...+  +.+|+|||...-..-....+++.+.+||.. .+.+|+...
T Consensus       138 ~~~~--~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~  181 (265)
T 2bjv_A          138 LQVN--VRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRE  181 (265)
T ss_dssp             EECC--CEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGG
T ss_pred             ccCC--eEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhh
Confidence            1122  677777776210000001245788889864 366665554

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=99.64  E-value=4.4e-17  Score=133.92  Aligned_cols=141  Identities=21%  Similarity=0.195  Sum_probs=98.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.++|++++++.+...+...             ..+..+|++||||||||++|+++++.++.+++.+++++..       
T Consensus        26 ~~ivg~~~~~~~l~~~l~~~-------------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------   85 (324)
T 3u61_B           26 DECILPAFDKETFKSITSKG-------------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------   85 (324)
T ss_dssp             TTSCCCHHHHHHHHHHHHTT-------------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------
T ss_pred             HHHhCcHHHHHHHHHHHHcC-------------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------
Confidence            34689999999998877310             1123456888899999999999999999999999986632       


Q ss_pred             cHHHHHHHHHHhcc-hhhhhhCCCEEEEcchhhhc-ccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          85 DVESIIQKLLHECD-YDVELAEQSIIYIDEIDKIS-KKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        85 ~~~~~~~~~~~~~~-~~~~~~~~~vl~iDEid~l~-~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                        ...++..+.... .......+.++||||+|.+. ..             .++.|+..++...             .+ 
T Consensus        86 --~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~-------------~~~~L~~~le~~~-------------~~-  136 (324)
T 3u61_B           86 --IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAE-------------SQRHLRSFMEAYS-------------SN-  136 (324)
T ss_dssp             --HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHH-------------HHHHHHHHHHHHG-------------GG-
T ss_pred             --HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHH-------------HHHHHHHHHHhCC-------------CC-
Confidence              111222222110 00011257899999999998 55             7889999998532             11 


Q ss_pred             ceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         163 QVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       163 ~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                       +.+|.++|.       ...+++++++||. .+.|+.|+.+
T Consensus       137 -~~iI~~~n~-------~~~l~~~l~sR~~-~i~~~~~~~~  168 (324)
T 3u61_B          137 -CSIIITANN-------IDGIIKPLQSRCR-VITFGQPTDE  168 (324)
T ss_dssp             -CEEEEEESS-------GGGSCTTHHHHSE-EEECCCCCHH
T ss_pred             -cEEEEEeCC-------ccccCHHHHhhCc-EEEeCCCCHH
Confidence             667777777       5588999999995 4888888754

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=99.63  E-value=7.5e-17  Score=138.94  Aligned_cols=134  Identities=21%  Similarity=0.283  Sum_probs=86.3

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .|+|+++.++.+...+..              ....++||+||||||||++|+++|+.+          +.+++.++++ 
T Consensus       181 ~iiGr~~~i~~l~~~l~r--------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~-  245 (468)
T 3pxg_A          181 PVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG-  245 (468)
T ss_dssp             CCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred             CccCcHHHHHHHHHHHhc--------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-
Confidence            479999999998876621              234589999999999999999999997          7778888876 


Q ss_pred             ccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910          76 FTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK  155 (225)
Q Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~  155 (225)
                         ..|.|.. ...+..++...    ....++|+|||     ..            ..+++.|+..|+...         
T Consensus       246 ---~~~~g~~-e~~~~~~~~~~----~~~~~~iLfiD-----~~------------~~a~~~L~~~L~~g~---------  291 (468)
T 3pxg_A          246 ---TKYRGEF-EDRLKKVMDEI----RQAGNIILFID-----AA------------IDASNILKPSLARGE---------  291 (468)
T ss_dssp             -----------CTTHHHHHHHH----HTCCCCEEEEC-----C--------------------CCCTTSSS---------
T ss_pred             ---ccccchH-HHHHHHHHHHH----HhcCCeEEEEe-----Cc------------hhHHHHHHHhhcCCC---------
Confidence               2355542 22334444443    33468999999     11            115677777776421         


Q ss_pred             cCCCCCCceeEEecCcceeeccCccc-----cHHHHHHhhcccccccccccccc
Q psy5910         156 KNPSQNPQVFNIDTTNILFIAGGAFS-----GIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       156 ~~~~~~~~~~~i~ttn~~~i~~~~~~-----~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                              +.+|++||.       .+     .++++++|||.. +.++.|+.+.
T Consensus       292 --------v~vI~at~~-------~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~  329 (468)
T 3pxg_A          292 --------LQCIGATTL-------DEYRKYIEKDAALERRFQP-IQVDQPSVDE  329 (468)
T ss_dssp             --------CEEEEECCT-------TTTHHHHTTCSHHHHSEEE-EECCCCCHHH
T ss_pred             --------EEEEecCCH-------HHHHHHhhcCHHHHHhCcc-ceeCCCCHHH
Confidence                    778888877       32     588999999975 7777777665

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.62  E-value=8.8e-16  Score=118.53  Aligned_cols=144  Identities=24%  Similarity=0.261  Sum_probs=95.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~   79 (225)
                      +.++|++++++.+...+..              ...++++|+||||||||++++.+++.+     ...++.+++......
T Consensus        17 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~   82 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI   82 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred             HHHcCcHHHHHHHHHHHhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence            4578999999998887621              122369999999999999999999876     345676766543210


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                          ......+.......  ......+.+|+|||++.+...             .++.|+.+++...             
T Consensus        83 ----~~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~-------------~~~~l~~~l~~~~-------------  130 (226)
T 2chg_A           83 ----DVVRHKIKEFARTA--PIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEMYS-------------  130 (226)
T ss_dssp             ----HHHHHHHHHHHTSC--CSTTCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT-------------
T ss_pred             ----HHHHHHHHHHhccc--CCCccCceEEEEeChhhcCHH-------------HHHHHHHHHHhcC-------------
Confidence                01111111111110  111246789999999999865             6788888887531             


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+  +.+|.++|.       ...+++++.+||. .+.++.++.++
T Consensus       131 ~~--~~~i~~~~~-------~~~~~~~l~~r~~-~i~~~~~~~~~  165 (226)
T 2chg_A          131 KS--CRFILSCNY-------VSRIIEPIQSRCA-VFRFKPVPKEA  165 (226)
T ss_dssp             TT--EEEEEEESC-------GGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred             CC--CeEEEEeCC-------hhhcCHHHHHhCc-eeecCCCCHHH
Confidence            12  666777766       5578899999987 67777776654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.59  E-value=7.9e-16  Score=127.49  Aligned_cols=146  Identities=17%  Similarity=0.203  Sum_probs=93.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC------CCeEEeccCcccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN------VPIIVVDATSFTE   78 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~------~~~~~~~~~~~~~   78 (225)
                      +.++|++++++.+...+..              ...+++||+||||||||++|+++++.++      ..+..+++.+...
T Consensus        37 ~~i~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~  102 (353)
T 1sxj_D           37 DEVTAQDHAVTVLKKTLKS--------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERG  102 (353)
T ss_dssp             TTCCSCCTTHHHHHHHTTC--------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCC
T ss_pred             HHhhCCHHHHHHHHHHHhc--------------CCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccc
Confidence            3478999999998887621              1124699999999999999999998864      3577777765321


Q ss_pred             cCccCCcHHHHHHHHHHhcch--------hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910          79 AGYVGDDVESIIQKLLHECDY--------DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT  150 (225)
Q Consensus        79 ~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  150 (225)
                      .....    ..+.........        ......+.|++|||++.+.+.             .++.|++.|+...    
T Consensus       103 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~-------------~~~~Ll~~le~~~----  161 (353)
T 1sxj_D          103 ISIVR----EKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTMETYS----  161 (353)
T ss_dssp             HHHHT----THHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT----
T ss_pred             hHHHH----HHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHH-------------HHHHHHHHHHhcC----
Confidence            11111    111111110000        000124569999999999876             6889999998632    


Q ss_pred             ccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         151 SLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       151 ~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                               ..  ..+|.++|.       +..+++++++|+. .+.|+.++.++
T Consensus       162 ---------~~--~~~il~~~~-------~~~l~~~l~sR~~-~i~~~~~~~~~  196 (353)
T 1sxj_D          162 ---------GV--TRFCLICNY-------VTRIIDPLASQCS-KFRFKALDASN  196 (353)
T ss_dssp             ---------TT--EEEEEEESC-------GGGSCHHHHHHSE-EEECCCCCHHH
T ss_pred             ---------CC--ceEEEEeCc-------hhhCcchhhccCc-eEEeCCCCHHH
Confidence                     11  444455555       5578899999986 57777666654

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=99.59  E-value=3e-16  Score=142.58  Aligned_cols=134  Identities=21%  Similarity=0.284  Sum_probs=88.1

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .++|+++.++.+...+..              ....++||+||||||||++|+++|+.+          +.+++.+++  
T Consensus       181 ~iiG~~~~i~~l~~~l~~--------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--  244 (758)
T 3pxi_A          181 PVIGRSKEIQRVIEVLSR--------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--  244 (758)
T ss_dssp             CCCCCHHHHHHHHHHHHC--------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred             CccCchHHHHHHHHHHhC--------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--
Confidence            579999999999876621              234589999999999999999999997          777888877  


Q ss_pred             ccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910          76 FTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK  155 (225)
Q Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~  155 (225)
                        ...|.|+. +..+..++..+    ....++|+|||     ...            .+++.|+..|+...         
T Consensus       245 --g~~~~G~~-e~~l~~~~~~~----~~~~~~iLfiD-----~~~------------~~~~~L~~~l~~~~---------  291 (758)
T 3pxi_A          245 --GTKYRGEF-EDRLKKVMDEI----RQAGNIILFID-----AAI------------DASNILKPSLARGE---------  291 (758)
T ss_dssp             -----------CTTHHHHHHHH----HTCCCCEEEEC-----C--------------------CCCTTSSS---------
T ss_pred             --cccccchH-HHHHHHHHHHH----HhcCCEEEEEc-----Cch------------hHHHHHHHHHhcCC---------
Confidence              22456543 33445555544    34578999999     111            15677777776321         


Q ss_pred             cCCCCCCceeEEecCcceeeccCccc-----cHHHHHHhhcccccccccccccc
Q psy5910         156 KNPSQNPQVFNIDTTNILFIAGGAFS-----GIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       156 ~~~~~~~~~~~i~ttn~~~i~~~~~~-----~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                              +.+|++||.       .+     .++++++|||. .+.++.|+.+.
T Consensus       292 --------v~~I~at~~-------~~~~~~~~~d~al~rRf~-~i~v~~p~~~~  329 (758)
T 3pxi_A          292 --------LQCIGATTL-------DEYRKYIEKDAALERRFQ-PIQVDQPSVDE  329 (758)
T ss_dssp             --------CEEEEECCT-------TTTHHHHTTCSHHHHSEE-EEECCCCCHHH
T ss_pred             --------EEEEeCCCh-------HHHHHHhhccHHHHhhCc-EEEeCCCCHHH
Confidence                    778888877       33     58999999994 48888887765

>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}

Probab=99.56  E-value=1.6e-16  Score=134.41  Aligned_cols=182  Identities=9%  Similarity=0.031  Sum_probs=103.3

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHH-HHHhCCCeEEeccCcccccCc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTL-AKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~i-a~~~~~~~~~~~~~~~~~~~~   81 (225)
                      +.. |+||+.+|..|.-++.   ++...      ....-||||.|+||| ||++|+++ ++.+....+ ..+......+.
T Consensus       212 Iap-I~G~e~vK~aLll~L~---GG~~k------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f-t~g~~ss~~gL  279 (506)
T 3f8t_A          212 IAP-LPGAEEVGKMLALQLF---SCVGK------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY-VDLRRTELTDL  279 (506)
T ss_dssp             HCC-STTCHHHHHHHHHHHT---TCCSS------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE-EEGGGCCHHHH
T ss_pred             hcc-cCCCHHHHHHHHHHHc---CCccc------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE-ecCCCCCccCc
Confidence            446 8999999888876661   11100      012238999999999 99999999 777644332 22110000001


Q ss_pred             cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910          82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                      .+. .... .. +....|.+..+.++++|+||++++.++             .|.+|++.|++...++.  + ... ..+
T Consensus       280 t~s-~r~~-tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~-------------~qsaLlEaMEe~~VtI~--G-~~l-par  339 (506)
T 3f8t_A          280 TAV-LKED-RG-WALRAGAAVLADGGILAVDHLEGAPEP-------------HRWALMEAMDKGTVTVD--G-IAL-NAR  339 (506)
T ss_dssp             SEE-EEES-SS-EEEEECHHHHTTTSEEEEECCTTCCHH-------------HHHHHHHHHHHSEEEET--T-EEE-ECC
T ss_pred             eEE-EEcC-CC-cccCCCeeEEcCCCeeehHhhhhCCHH-------------HHHHHHHHHhCCcEEEC--C-EEc-CCC
Confidence            100 0000 11 112234455567899999999999987             89999999998776655  2 222 233


Q ss_pred             CceeEEecCcceeeccC----ccccHHHHHHhhcccc---ccccccccccchhcccCChhHHHH
Q psy5910         162 PQVFNIDTTNILFIAGG----AFSGIENFIINRINQE---TNFLEKLNNNYNLICETNTEDLIN  218 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~----~~~~l~~al~~Rf~~~---i~~~~~~~~~~~l~~~~~~~~l~~  218 (225)
                        +.+++|+|...-.+.    ..-.|++++++|||..   ++|+.++.+.+.....++.+++.+
T Consensus       340 --f~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~  401 (506)
T 3f8t_A          340 --CAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRR  401 (506)
T ss_dssp             --CEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHH
T ss_pred             --eEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHH
Confidence              899999998641100    0127999999999886   566665554333333455555543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=99.56  E-value=9.3e-16  Score=140.97  Aligned_cols=154  Identities=21%  Similarity=0.244  Sum_probs=89.6

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .++|+++.++.+...+..              ...++++|+||||||||++|+.+++.+          +.+++.++++.
T Consensus       171 ~viGr~~~i~~l~~~l~~--------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~  236 (854)
T 1qvr_A          171 PVIGRDEEIRRVIQILLR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS  236 (854)
T ss_dssp             CCCSCHHHHHHHHHHHHC--------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred             ccCCcHHHHHHHHHHHhc--------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence            468999998888776511              233589999999999999999999987          77899999877


Q ss_pred             ccc-cCccCCcHHHHHHHHHHhcchhhhh-hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          76 FTE-AGYVGDDVESIIQKLLHECDYDVEL-AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      +.. ..|.|.. ...+..++...    .. ..++|+||||++.+.+..+..     ....+.+.|..+++...       
T Consensus       237 l~~g~~~~g~~-~~~l~~~~~~~----~~~~~~~iL~IDEi~~l~~~~~~~-----g~~~~~~~L~~~l~~~~-------  299 (854)
T 1qvr_A          237 LLAGAKYRGEF-EERLKAVIQEV----VQSQGEVILFIDELHTVVGAGKAE-----GAVDAGNMLKPALARGE-------  299 (854)
T ss_dssp             ---------CH-HHHHHHHHHHH----HTTCSSEEEEECCC------------------------HHHHHTTC-------
T ss_pred             hhccCccchHH-HHHHHHHHHHH----HhcCCCeEEEEecHHHHhccCCcc-----chHHHHHHHHHHHhCCC-------
Confidence            742 2355543 44555665543    22 257899999999998654221     11235667777776422       


Q ss_pred             cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                +.+|+++|..-...   -.+++++.+||+. +.++.|+.+.
T Consensus       300 ----------i~~I~at~~~~~~~---~~~d~aL~rRf~~-i~l~~p~~~e  336 (854)
T 1qvr_A          300 ----------LRLIGATTLDEYRE---IEKDPALERRFQP-VYVDEPTVEE  336 (854)
T ss_dssp             ----------CCEEEEECHHHHHH---HTTCTTTCSCCCC-EEECCCCHHH
T ss_pred             ----------eEEEEecCchHHhh---hccCHHHHhCCce-EEeCCCCHHH
Confidence                      66677776511000   1358899999985 7888887655

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=99.55  E-value=2.6e-15  Score=136.44  Aligned_cols=157  Identities=24%  Similarity=0.288  Sum_probs=101.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~   74 (225)
                      +.++|+++.++.+.+.+..              ....++||+||||||||++|+++++.+          +..++.++..
T Consensus       186 d~~iGr~~~i~~l~~~l~~--------------~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~  251 (758)
T 1r6b_X          186 DPLIGREKELERAIQVLCR--------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG  251 (758)
T ss_dssp             CCCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred             CCccCCHHHHHHHHHHHhc--------------cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence            3478999999888776621              234589999999999999999999987          5567777776


Q ss_pred             cccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          75 SFTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        75 ~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      .+.. ..|.|. ....+..++...    ....++|+||||++.+.+....    ......+.+.|..+++..        
T Consensus       252 ~l~~~~~~~g~-~e~~l~~~~~~~----~~~~~~iL~IDEi~~l~~~~~~----~~~~~~~~~~L~~~l~~~--------  314 (758)
T 1r6b_X          252 SLLAGTKYRGD-FEKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAA----SGGQVDAANLIKPLLSSG--------  314 (758)
T ss_dssp             ---CCCCCSSC-HHHHHHHHHHHH----SSSSCEEEEETTTTTTTTSCCS----SSCHHHHHHHHSSCSSSC--------
T ss_pred             HHhccccccch-HHHHHHHHHHHH----HhcCCeEEEEechHHHhhcCCC----CcchHHHHHHHHHHHhCC--------
Confidence            6542 235554 355566666554    3346799999999999865321    112233445554454421        


Q ss_pred             cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                             .  +.+|.++|..-..  ..-.+|+++.+||+ .+.++.|+.+.
T Consensus       315 -------~--~~~I~at~~~~~~--~~~~~d~aL~~Rf~-~i~v~~p~~~e  353 (758)
T 1r6b_X          315 -------K--IRVIGSTTYQEFS--NIFEKDRALARRFQ-KIDITEPSIEE  353 (758)
T ss_dssp             -------C--CEEEEEECHHHHH--CCCCCTTSSGGGEE-EEECCCCCHHH
T ss_pred             -------C--eEEEEEeCchHHh--hhhhcCHHHHhCce-EEEcCCCCHHH
Confidence                   1  6677777651100  01146788999997 57888887655

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.55  E-value=5.2e-15  Score=123.72  Aligned_cols=162  Identities=21%  Similarity=0.200  Sum_probs=101.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATS   75 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~   75 (225)
                      +.++|+++.++.+...+......          ....+++|+||||||||++++.+++.+         +.+++.+++..
T Consensus        19 ~~~~gr~~~~~~l~~~l~~~~~~----------~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~   88 (387)
T 2v1u_A           19 DVLPHREAELRRLAEVLAPALRG----------EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARH   88 (387)
T ss_dssp             SCCTTCHHHHHHHHHTTGGGTSS----------CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTT
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcC----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCc
Confidence            56899999999988866322111          234589999999999999999999988         77888898865


Q ss_pred             cccc---------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          76 FTEA---------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        76 ~~~~---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                      ....               ...|.........++....   ....+.+|+|||++.+....        .   .+..|..
T Consensus        89 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~--------~---~~~~l~~  154 (387)
T 2v1u_A           89 RETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRP--------G---GQDLLYR  154 (387)
T ss_dssp             SCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHST--------T---HHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccC--------C---CChHHHh
Confidence            4221               0122222333333332210   11246699999999997552        0   2344544


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~~~  204 (225)
                      +++.....         + ...++.+|.++|..-    ..+.+++.+.+||.. .+.|+.++.++
T Consensus       155 l~~~~~~~---------~-~~~~~~~I~~t~~~~----~~~~l~~~l~~r~~~~~i~l~~l~~~~  205 (387)
T 2v1u_A          155 ITRINQEL---------G-DRVWVSLVGITNSLG----FVENLEPRVKSSLGEVELVFPPYTAPQ  205 (387)
T ss_dssp             HHHGGGCC---------------CEEEEECSCST----TSSSSCHHHHTTTTSEECCBCCCCHHH
T ss_pred             Hhhchhhc---------C-CCceEEEEEEECCCc----hHhhhCHHHHhcCCCeEEeeCCCCHHH
Confidence            44421100         0 011277778877621    125788999999986 58998888765

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.55  E-value=1e-14  Score=113.81  Aligned_cols=151  Identities=19%  Similarity=0.203  Sum_probs=91.9

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe--ccC--------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV--DAT--------   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~--~~~--------   74 (225)
                      +.++|++++++.+...+...             .....++|+||||||||++++.+++.++......  .+.        
T Consensus        23 ~~~~g~~~~~~~l~~~l~~~-------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (250)
T 1njg_A           23 ADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI   89 (250)
T ss_dssp             GGCCSCHHHHHHHHHHHHHT-------------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHcC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence            45789999999988776210             1123688999999999999999998874422110  000        


Q ss_pred             ------cccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910          75 ------SFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS  148 (225)
Q Consensus        75 ------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~  148 (225)
                            .+.............+..++...........+.+|+|||++.+...             .++.|+..++...  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~-------------~~~~l~~~l~~~~--  154 (250)
T 1njg_A           90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLKTLEEPP--  154 (250)
T ss_dssp             HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------HHHHHHHHHHSCC--
T ss_pred             hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHH-------------HHHHHHHHHhcCC--
Confidence                  0000000001112233444443321112235789999999998755             6788999987521  


Q ss_pred             ccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         149 ITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                 ..  +.+|.++|.       ...+++++.+|+ ..+.++.++.++
T Consensus       155 -----------~~--~~~i~~t~~-------~~~~~~~l~~r~-~~i~l~~l~~~e  189 (250)
T 1njg_A          155 -----------EH--VKFLLATTD-------PQKLPVTILSRC-LQFHLKALDVEQ  189 (250)
T ss_dssp             -----------TT--EEEEEEESC-------GGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred             -----------Cc--eEEEEEeCC-------hHhCCHHHHHHh-hhccCCCCCHHH
Confidence                       12  666666665       457788898885 457777776654

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=99.55  E-value=2.7e-15  Score=122.40  Aligned_cols=156  Identities=10%  Similarity=0.064  Sum_probs=98.2

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      .+.|.++..+.+...+......          ..+++++|+||||||||++++.+++.+          +..++.++|..
T Consensus        21 ~L~~Re~E~~~i~~~L~~~i~~----------~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~   90 (318)
T 3te6_A           21 LLKSQVEDFTRIFLPIYDSLMS----------SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE   90 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT----------TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred             ccCCHHHHHHHHHHHHHHHhcC----------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence            4667778887777666333321          234689999999999999999999988          34578889866


Q ss_pred             cccc---------CccCC-----cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHH
Q psy5910          76 FTEA---------GYVGD-----DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKL  141 (225)
Q Consensus        76 ~~~~---------~~~g~-----~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~  141 (225)
                      +.+.         .+.|.     .....+...|....  -....+.|++|||+|.+. .              |+.|+.+
T Consensus        91 ~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~-~--------------q~~L~~l  153 (318)
T 3te6_A           91 LAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP--KAKKRKTLILIQNPENLL-S--------------EKILQYF  153 (318)
T ss_dssp             CC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC-C--------------THHHHHH
T ss_pred             cCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh--hccCCceEEEEecHHHhh-c--------------chHHHHH
Confidence            5331         01111     12334555555421  012456899999999998 2              2444554


Q ss_pred             HhcCCcCccccccccCCCCCCceeEEecCcceeeccCccc-cHHHHHHhhccc-ccccccccccc
Q psy5910         142 IEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFS-GIENFIINRINQ-ETNFLEKLNNN  204 (225)
Q Consensus       142 l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~-~l~~al~~Rf~~-~i~~~~~~~~~  204 (225)
                      ++-..          .+..+  +.+|+++|.+    ..++ .+++++++||.. .|.|++++.++
T Consensus       154 ~~~~~----------~~~s~--~~vI~i~n~~----d~~~~~L~~~v~SR~~~~~i~F~pYt~~e  202 (318)
T 3te6_A          154 EKWIS----------SKNSK--LSIICVGGHN----VTIREQINIMPSLKAHFTEIKLNKVDKNE  202 (318)
T ss_dssp             HHHHH----------CSSCC--EEEEEECCSS----CCCHHHHHTCHHHHTTEEEEECCCCCHHH
T ss_pred             Hhccc----------ccCCc--EEEEEEecCc----ccchhhcchhhhccCCceEEEeCCCCHHH
Confidence            43100          01122  7888888772    1122 367788899974 59999999887

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.54  E-value=5.8e-15  Score=120.88  Aligned_cols=144  Identities=24%  Similarity=0.266  Sum_probs=94.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC-----CeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV-----PIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~-----~~~~~~~~~~~~~   79 (225)
                      +.++|++++++.+...+..              ...+++||+||||||||++|+++++.+..     .++.+++.+... 
T Consensus        25 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~-   89 (327)
T 1iqp_A           25 DDIVGQEHIVKRLKHYVKT--------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-   89 (327)
T ss_dssp             TTCCSCHHHHHHHHHHHHH--------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-
T ss_pred             HHhhCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc-
Confidence            3479999999999876621              11236999999999999999999998632     366666544311 


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                       .  ......+......  .......+.+++|||++.+...             .++.|+..++...             
T Consensus        90 -~--~~~~~~~~~~~~~--~~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~~-------------  138 (327)
T 1iqp_A           90 -I--NVIREKVKEFART--KPIGGASFKIIFLDEADALTQD-------------AQQALRRTMEMFS-------------  138 (327)
T ss_dssp             -H--HTTHHHHHHHHHS--CCGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHTT-------------
T ss_pred             -h--HHHHHHHHHHHhh--CCcCCCCCeEEEEeCCCcCCHH-------------HHHHHHHHHHhcC-------------
Confidence             0  0111112222111  1112246789999999999866             6889999998532             


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+  +.+|.++|.       ...+.+++.+|+. .+.|+.++.+.
T Consensus       139 ~~--~~~i~~~~~-------~~~l~~~l~sr~~-~~~~~~l~~~~  173 (327)
T 1iqp_A          139 SN--VRFILSCNY-------SSKIIEPIQSRCA-IFRFRPLRDED  173 (327)
T ss_dssp             TT--EEEEEEESC-------GGGSCHHHHHTEE-EEECCCCCHHH
T ss_pred             CC--CeEEEEeCC-------ccccCHHHHhhCc-EEEecCCCHHH
Confidence            12  556666665       4578899999986 56777766554

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.54  E-value=2.1e-14  Score=118.53  Aligned_cols=153  Identities=23%  Similarity=0.293  Sum_probs=94.9

Q ss_pred             eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcH
Q psy5910           7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDV   86 (225)
Q Consensus         7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~   86 (225)
                      ++|++.+++.+...+.....+         ..+..+++|+|||||||||+++++++.++.++...++..+..    +.+ 
T Consensus        27 ~~g~~~~~~~l~~~i~~~~~~---------~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~----~~~-   92 (334)
T 1in4_A           27 FIGQENVKKKLSLALEAAKMR---------GEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK----QGD-   92 (334)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHH---------TCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS----HHH-
T ss_pred             ccCcHHHHHHHHHHHHHHHhc---------CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC----HHH-
Confidence            478888888876655211000         012257899999999999999999999999887766654321    111 


Q ss_pred             HHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc-----ccccccCCCCC
Q psy5910          87 ESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT-----SLAEKKNPSQN  161 (225)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~-----~~~~~~~~~~~  161 (225)
                         +...+..      .....|+|+||++.+.+.             +++.|+..++.....+.     ...........
T Consensus        93 ---l~~~~~~------~~~~~v~~iDE~~~l~~~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~  150 (334)
T 1in4_A           93 ---MAAILTS------LERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQP  150 (334)
T ss_dssp             ---HHHHHHH------CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------CC
T ss_pred             ---HHHHHHH------ccCCCEEEEcchhhcCHH-------------HHHHHHHHHHhcccceeeccCcccccccccCCC
Confidence               2222221      135679999999998864             67777777765432110     00000001111


Q ss_pred             CceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                        +.++.+++.       +..+++.+++||.....++.++.+.
T Consensus       151 --~~li~at~~-------~~~Ls~~l~sR~~l~~~Ld~~~~~~  184 (334)
T 1in4_A          151 --FTLVGATTR-------SGLLSSPLRSRFGIILELDFYTVKE  184 (334)
T ss_dssp             --CEEEEEESC-------GGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred             --eEEEEecCC-------cccCCHHHHHhcCceeeCCCCCHHH
Confidence              445555555       5689999999998777777777655

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.54  E-value=5.4e-15  Score=123.83  Aligned_cols=153  Identities=20%  Similarity=0.237  Sum_probs=98.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----------CCCeEEecc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----------NVPIIVVDA   73 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----------~~~~~~~~~   73 (225)
                      +.++|+++.++.+...+......          ...++++|+||||||||++|+.+++.+           +.+++.+++
T Consensus        20 ~~l~gr~~~~~~l~~~l~~~~~~----------~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~   89 (384)
T 2qby_B           20 KEIPFREDILRDAAIAIRYFVKN----------EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNC   89 (384)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHTT----------CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEH
T ss_pred             CCCCChHHHHHHHHHHHHHHHcC----------CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEEC
Confidence            56899999999888766332221          123478999999999999999999987           888999987


Q ss_pred             Cccc-cc----------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHH
Q psy5910          74 TSFT-EA----------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQ  136 (225)
Q Consensus        74 ~~~~-~~----------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~  136 (225)
                      .... ..                .+.|......+..++...    . ..+.+|+|||++.+....            .++
T Consensus        90 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l----~-~~~~vlilDEi~~l~~~~------------~~~  152 (384)
T 2qby_B           90 REVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT----R-NIRAIIYLDEVDTLVKRR------------GGD  152 (384)
T ss_dssp             HHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH----S-SSCEEEEEETTHHHHHST------------TSH
T ss_pred             ccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh----c-cCCCEEEEECHHHhccCC------------CCc
Confidence            6532 10                011222222233332221    1 223399999999998652            123


Q ss_pred             H-HHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         137 S-LLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       137 ~-Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      . +..+++..              .+  +.+|.++|..-    ..+.+++++.+||...+.+++++.++
T Consensus       153 ~~l~~l~~~~--------------~~--~~iI~~t~~~~----~~~~l~~~l~sr~~~~i~l~~l~~~~  201 (384)
T 2qby_B          153 IVLYQLLRSD--------------AN--ISVIMISNDIN----VRDYMEPRVLSSLGPSVIFKPYDAEQ  201 (384)
T ss_dssp             HHHHHHHTSS--------------SC--EEEEEECSSTT----TTTTSCHHHHHTCCCEEEECCCCHHH
T ss_pred             eeHHHHhcCC--------------cc--eEEEEEECCCc----hHhhhCHHHHhcCCCeEEECCCCHHH
Confidence            3 33444321              11  77777777621    12578899999998788998887765

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.53  E-value=2.8e-15  Score=122.31  Aligned_cols=144  Identities=24%  Similarity=0.252  Sum_probs=96.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~   79 (225)
                      +.++|++++++.+...+..              ...+++||+||||||||++|+++++.+     +.+++.+++.+... 
T Consensus        17 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~-   81 (319)
T 2chq_A           17 DEVVGQDEVIQRLKGYVER--------------KNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG-   81 (319)
T ss_dssp             GGSCSCHHHHHHHHTTTTT--------------TCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC-
T ss_pred             HHHhCCHHHHHHHHHHHhC--------------CCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC-
Confidence            3479999999999887621              112369999999999999999999986     33467777765321 


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                         .......+.......  ......+.+++|||++.+...             .++.|++.++...             
T Consensus        82 ---~~~~~~~~~~~~~~~--~~~~~~~~vliiDe~~~l~~~-------------~~~~L~~~le~~~-------------  130 (319)
T 2chq_A           82 ---IDVVRHKIKEFARTA--PIGGAPFKIIFLDEADALTAD-------------AQAALRRTMEMYS-------------  130 (319)
T ss_dssp             ---TTTSSHHHHHHHHSC--CSSSCCCEEEEEETGGGSCHH-------------HHHTTGGGTSSSS-------------
T ss_pred             ---hHHHHHHHHHHHhcC--CCCCCCceEEEEeCCCcCCHH-------------HHHHHHHHHHhcC-------------
Confidence               111122222222111  111245789999999999865             6788888887521             


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+  +.+|.++|.       ...+.+++.+|+. .+.|+.|+.++
T Consensus       131 ~~--~~~i~~~~~-------~~~l~~~l~sr~~-~i~~~~~~~~~  165 (319)
T 2chq_A          131 KS--CRFILSCNY-------VSRIIEPIQSRCA-VFRFKPVPKEA  165 (319)
T ss_dssp             SS--EEEEEEESC-------GGGSCHHHHTTCE-EEECCCCCHHH
T ss_pred             CC--CeEEEEeCC-------hhhcchHHHhhCe-EEEecCCCHHH
Confidence            12  666666666       5578899999985 57777777654

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=99.52  E-value=2.7e-14  Score=116.33  Aligned_cols=137  Identities=12%  Similarity=0.169  Sum_probs=88.9

Q ss_pred             chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh------CCCeEEeccCcccccCcc
Q psy5910           9 GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII------NVPIIVVDATSFTEAGYV   82 (225)
Q Consensus         9 G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~------~~~~~~~~~~~~~~~~~~   82 (225)
                      ||+++++.|...+...             . .+.+||+||||+|||++|+++++.+      ...+..+++..-    ..
T Consensus         1 g~~~~~~~L~~~i~~~-------------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~   62 (305)
T 2gno_A            1 GAKDQLETLKRIIEKS-------------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NI   62 (305)
T ss_dssp             ---CHHHHHHHHHHTC-------------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CB
T ss_pred             ChHHHHHHHHHHHHCC-------------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CC
Confidence            7888888888776211             1 2378899999999999999999864      235666665321    11


Q ss_pred             CCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCC
Q psy5910          83 GDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP  162 (225)
Q Consensus        83 g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~  162 (225)
                      +   ...++.+.+.+..........|++|||+|.+...             .+++|++.||+.             ..+ 
T Consensus        63 ~---id~ir~li~~~~~~p~~~~~kvviIdead~lt~~-------------a~naLLk~LEep-------------~~~-  112 (305)
T 2gno_A           63 G---IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ-------------AANAFLKALEEP-------------PEY-  112 (305)
T ss_dssp             C---HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH-------------HHHHTHHHHHSC-------------CTT-
T ss_pred             C---HHHHHHHHHHHhhccccCCceEEEeccHHHhCHH-------------HHHHHHHHHhCC-------------CCC-
Confidence            1   1223444444321111234679999999999866             789999999962             222 


Q ss_pred             ceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         163 QVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       163 ~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       .++|.+++.       +..+.+++++|   .+.|+.++.++
T Consensus       113 -t~fIl~t~~-------~~kl~~tI~SR---~~~f~~l~~~~  143 (305)
T 2gno_A          113 -AVIVLNTRR-------WHYLLPTIKSR---VFRVVVNVPKE  143 (305)
T ss_dssp             -EEEEEEESC-------GGGSCHHHHTT---SEEEECCCCHH
T ss_pred             -eEEEEEECC-------hHhChHHHHce---eEeCCCCCHHH
Confidence             444444444       46899999999   78888877765

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.50  E-value=1.3e-14  Score=118.48  Aligned_cols=142  Identities=17%  Similarity=0.220  Sum_probs=94.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~   79 (225)
                      +.++|++++++.+...+..              ...++++|+||||||||++|+.+++.+     +.+++.+++.+..  
T Consensus        21 ~~~~g~~~~~~~l~~~l~~--------------~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--   84 (323)
T 1sxj_B           21 SDIVGNKETIDRLQQIAKD--------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR--   84 (323)
T ss_dssp             GGCCSCTHHHHHHHHHHHS--------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC--
T ss_pred             HHHHCCHHHHHHHHHHHHc--------------CCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc--
Confidence            4578999999998887621              112358999999999999999999986     3346667665421  


Q ss_pred             CccCCcHHHHHHHHHHhcc---hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccccc
Q psy5910          80 GYVGDDVESIIQKLLHECD---YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKK  156 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~---~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~  156 (225)
                         +   ...++..+....   .......+.+++|||++.+...             .++.|++.++...          
T Consensus        85 ---~---~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~~----------  135 (323)
T 1sxj_B           85 ---G---IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMELYS----------  135 (323)
T ss_dssp             ---S---HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHHTT----------
T ss_pred             ---C---hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHH-------------HHHHHHHHHhccC----------
Confidence               1   112222222210   0000224789999999999865             6788999998521          


Q ss_pred             CCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         157 NPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       157 ~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                         .+  ..+|.++|.       ...+.+++.+|+. .+.|+.++.++
T Consensus       136 ---~~--~~~il~~~~-------~~~l~~~l~sr~~-~i~~~~~~~~~  170 (323)
T 1sxj_B          136 ---NS--TRFAFACNQ-------SNKIIEPLQSQCA-ILRYSKLSDED  170 (323)
T ss_dssp             ---TT--EEEEEEESC-------GGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred             ---CC--ceEEEEeCC-------hhhchhHHHhhce-EEeecCCCHHH
Confidence               12  555555655       5578899999975 57777777654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.50  E-value=3.6e-14  Score=123.70  Aligned_cols=122  Identities=16%  Similarity=0.158  Sum_probs=77.3

Q ss_pred             ceeechhhHHhhheeeeEecccce-Eeecccce--eeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRL-FLLKSKNI--YLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~-~~~~~~~~--~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      +.++|++++++.|..++....... ......+.  ..+.+++||+||||||||++|+++|+.++.+++.+++.+....  
T Consensus        39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~--  116 (516)
T 1sxj_A           39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK--  116 (516)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCH--
T ss_pred             HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchH--
Confidence            357999999999988774322110 00000000  0123589999999999999999999999999999999776431  


Q ss_pred             cCCcHHHHHHHHHHhc------chh--------hhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910          82 VGDDVESIIQKLLHEC------DYD--------VELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~------~~~--------~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                            ..+...+...      ...        .....+.||||||+|.+.....          ...+.|+.+++.
T Consensus       117 ------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~----------~~l~~L~~~l~~  177 (516)
T 1sxj_A          117 ------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR----------GGVGQLAQFCRK  177 (516)
T ss_dssp             ------HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST----------THHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH----------HHHHHHHHHHHh
Confidence                  1111111100      000        0124678999999999986521          145778888875

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=99.49  E-value=1.5e-14  Score=128.20  Aligned_cols=46  Identities=24%  Similarity=0.590  Sum_probs=38.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      +.++|++++++.+...+                ....+++|+||||||||++|+++++.++.
T Consensus        41 ~~i~G~~~~l~~l~~~i----------------~~g~~vll~Gp~GtGKTtlar~ia~~l~~   86 (604)
T 3k1j_A           41 DQVIGQEHAVEVIKTAA----------------NQKRHVLLIGEPGTGKSMLGQAMAELLPT   86 (604)
T ss_dssp             HHCCSCHHHHHHHHHHH----------------HTTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred             ceEECchhhHhhccccc----------------cCCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence            35789999998888777                34458999999999999999999998853

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.48  E-value=6e-14  Score=116.05  Aligned_cols=142  Identities=21%  Similarity=0.302  Sum_probs=90.0

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----eEEeccCccc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----IIVVDATSFT   77 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~   77 (225)
                      +++ ++||+++++.|...+..              ...++++|+||||||||++|+++++.+..+     +..+++.+. 
T Consensus        24 ~~~-~~g~~~~~~~L~~~i~~--------------g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~-   87 (340)
T 1sxj_C           24 LDE-VYGQNEVITTVRKFVDE--------------GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDD-   87 (340)
T ss_dssp             GGG-CCSCHHHHHHHHHHHHT--------------TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSC-
T ss_pred             HHH-hcCcHHHHHHHHHHHhc--------------CCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCccc-
Confidence            444 58999999988876621              011358999999999999999999987432     455554332 


Q ss_pred             ccCccCCcHHHHHHHHHHhcc--hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccc
Q psy5910          78 EAGYVGDDVESIIQKLLHECD--YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEK  155 (225)
Q Consensus        78 ~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~  155 (225)
                          .|  .. .++.......  ...-.....|++|||+|.+...             .++.|+..|+...         
T Consensus        88 ----~~--~~-~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~-------------~~~~L~~~le~~~---------  138 (340)
T 1sxj_C           88 ----RG--ID-VVRNQIKDFASTRQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERYT---------  138 (340)
T ss_dssp             ----CS--HH-HHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT---------
T ss_pred             ----cc--HH-HHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhcCC---------
Confidence                11  11 1222221110  0000124689999999999765             7899999998632         


Q ss_pred             cCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccccc
Q psy5910         156 KNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNN  203 (225)
Q Consensus       156 ~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~  203 (225)
                          ..  ..++.++|.       ...+.+++++|+. .+.|..++.+
T Consensus       139 ----~~--~~~il~~n~-------~~~i~~~i~sR~~-~~~~~~l~~~  172 (340)
T 1sxj_C          139 ----KN--TRFCVLANY-------AHKLTPALLSQCT-RFRFQPLPQE  172 (340)
T ss_dssp             ----TT--EEEEEEESC-------GGGSCHHHHTTSE-EEECCCCCHH
T ss_pred             ----CC--eEEEEEecC-------ccccchhHHhhce-eEeccCCCHH
Confidence                12  445555565       4578899999975 4666655544

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=99.46  E-value=5.8e-14  Score=117.07  Aligned_cols=143  Identities=22%  Similarity=0.250  Sum_probs=90.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCe----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPI----------------   68 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~----------------   68 (225)
                      +.++|++++++.+...+...             .....+||+||+|||||++|+++++.++...                
T Consensus        16 ~~~vg~~~~~~~L~~~l~~~-------------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~   82 (373)
T 1jr3_A           16 ADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI   82 (373)
T ss_dssp             TTSCSCHHHHHHHHHHHHHT-------------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred             hhccCcHHHHHHHHHHHHhC-------------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence            34799999999998876210             1123578999999999999999999885421                


Q ss_pred             --------EEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          69 --------IVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        69 --------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                              +.+++..     ..+.+   .++.++...........+.|++|||++.+...             .++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~-----~~~~~---~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~-------------~~~~Ll~  141 (373)
T 1jr3_A           83 EQGRFVDLIEIDAAS-----RTKVE---DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLK  141 (373)
T ss_dssp             HTSCCSSCEEEETTC-----SCCSS---CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHH-------------HHHHHHH
T ss_pred             hccCCCceEEecccc-----cCCHH---HHHHHHHHHhhccccCCeEEEEEECcchhcHH-------------HHHHHHH
Confidence                    2222111     01111   12233333211111235679999999999765             6889999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .++...             .+  +.+|.+++.       ...+.+++++|+ ..+.|+.++.++
T Consensus       142 ~le~~~-------------~~--~~~Il~~~~-------~~~l~~~l~sr~-~~i~~~~l~~~~  182 (373)
T 1jr3_A          142 TLEEPP-------------EH--VKFLLATTD-------PQKLPVTILSRC-LQFHLKALDVEQ  182 (373)
T ss_dssp             HHHSCC-------------SS--EEEEEEESC-------GGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred             HHhcCC-------------Cc--eEEEEEeCC-------hHhCcHHHHhhe-eEeeCCCCCHHH
Confidence            998521             12  555555554       446788899886 457777777654

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=99.45  E-value=3.6e-14  Score=116.53  Aligned_cols=128  Identities=15%  Similarity=0.268  Sum_probs=78.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      .+++|+||||||||++|+++++.+   +.+++++++..+.. .+.+......... +..     ....+.+|||||++.+
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~-~~~-----~~~~~~vL~iDEi~~l  110 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ-AMVEHLKKGTINE-FRN-----MYKSVDLLLLDDVQFL  110 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH-HHHHHHHHTCHHH-HHH-----HHHTCSEEEEECGGGG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHH-HHHHHHHcCcHHH-HHH-----HhcCCCEEEEcCcccc
Confidence            589999999999999999999998   88999998866532 1111000000001 110     1235889999999998


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc--cc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ--ET  195 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~--~i  195 (225)
                      ....           ..++.++..++....           ...  .+++.+++.+.-    ...+++++.+||..  .+
T Consensus       111 ~~~~-----------~~~~~l~~~l~~~~~-----------~~~--~iii~~~~~~~~----l~~l~~~L~sR~~~~~~i  162 (324)
T 1l8q_A          111 SGKE-----------RTQIEFFHIFNTLYL-----------LEK--QIILASDRHPQK----LDGVSDRLVSRFEGGILV  162 (324)
T ss_dssp             TTCH-----------HHHHHHHHHHHHHHH-----------TTC--EEEEEESSCGGG----CTTSCHHHHHHHHTSEEE
T ss_pred             cCCh-----------HHHHHHHHHHHHHHH-----------CCC--eEEEEecCChHH----HHHhhhHhhhcccCceEE
Confidence            8631           156777777653210           011  444555544110    12589999999973  46


Q ss_pred             ccccccccc
Q psy5910         196 NFLEKLNNN  204 (225)
Q Consensus       196 ~~~~~~~~~  204 (225)
                      .+++ +.++
T Consensus       163 ~l~~-~~~e  170 (324)
T 1l8q_A          163 EIEL-DNKT  170 (324)
T ss_dssp             ECCC-CHHH
T ss_pred             EeCC-CHHH
Confidence            6766 5443

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=99.45  E-value=3.6e-13  Score=111.19  Aligned_cols=122  Identities=9%  Similarity=0.133  Sum_probs=80.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC------------------------eEEeccCcccccCccCCcHHHHHHHHHHhc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP------------------------IIVVDATSFTEAGYVGDDVESIIQKLLHEC   97 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   97 (225)
                      .+||+||+|+|||++|+++++.+.+.                        +..+++..-  .  .... ...++.+.+..
T Consensus        26 a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~--~--~~~~-i~~ir~l~~~~  100 (334)
T 1a5t_A           26 ALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG--K--NTLG-VDAVREVTEKL  100 (334)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT--C--SSBC-HHHHHHHHHHT
T ss_pred             eEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc--C--CCCC-HHHHHHHHHHH
Confidence            48899999999999999999988543                        222222100  0  0011 22344555444


Q ss_pred             chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeecc
Q psy5910          98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAG  177 (225)
Q Consensus        98 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~  177 (225)
                      ..........|++|||+|.+...             .+++|++.||+.             ..+  .++|.++|.     
T Consensus       101 ~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lEep-------------~~~--~~~Il~t~~-----  147 (334)
T 1a5t_A          101 NEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLEEP-------------PAE--TWFFLATRE-----  147 (334)
T ss_dssp             TSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHTSC-------------CTT--EEEEEEESC-----
T ss_pred             hhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhcCC-------------CCC--eEEEEEeCC-----
Confidence            22212345789999999999866             789999999862             222  555555555     


Q ss_pred             CccccHHHHHHhhcccccccccccccc
Q psy5910         178 GAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       178 ~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                        ++.+.+++++|+. .+.|+.|+.++
T Consensus       148 --~~~l~~ti~SRc~-~~~~~~~~~~~  171 (334)
T 1a5t_A          148 --PERLLATLRSRCR-LHYLAPPPEQY  171 (334)
T ss_dssp             --GGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred             --hHhCcHHHhhcce-eeeCCCCCHHH
Confidence              5689999999974 58888887765

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.44  E-value=8e-14  Score=116.70  Aligned_cols=159  Identities=9%  Similarity=0.135  Sum_probs=98.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCC--cEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCcccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKS--NILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATSFTE   78 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~~~~   78 (225)
                      +.++|+++.++.+...+......          ....  .++|+||||||||++++.+++.+    +.+++.+++.....
T Consensus        17 ~~l~gr~~~~~~l~~~l~~~~~~----------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~   86 (389)
T 1fnn_A           17 KRLPHREQQLQQLDILLGNWLRN----------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN   86 (389)
T ss_dssp             SCCTTCHHHHHHHHHHHHHHHHS----------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred             CCCCChHHHHHHHHHHHHHHHcC----------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence            56899999999988877332111          1112  68899999999999999999998    46688888754321


Q ss_pred             c---------------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910          79 A---------------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE  143 (225)
Q Consensus        79 ~---------------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~  143 (225)
                      .               ...+.........+....   .....+.+|+|||++.+...             .+..|+.+++
T Consensus        87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlilDE~~~l~~~-------------~~~~L~~~~~  150 (389)
T 1fnn_A           87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD-------------ILSTFIRLGQ  150 (389)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH-------------HHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH---hhcCCeEEEEEECccccchH-------------HHHHHHHHHH
Confidence            0               001112222222221111   01234679999999999433             7788888886


Q ss_pred             cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccccc
Q psy5910         144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLNNN  204 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~~~  204 (225)
                      .....         ...+  +.+|.++|.+-    ..+.+++.+.+||.. .+.|++++.++
T Consensus       151 ~~~~~---------~~~~--~~iI~~~~~~~----~~~~l~~~~~~r~~~~~i~~~pl~~~~  197 (389)
T 1fnn_A          151 EADKL---------GAFR--IALVIVGHNDA----VLNNLDPSTRGIMGKYVIRFSPYTKDQ  197 (389)
T ss_dssp             CHHHH---------SSCC--EEEEEEESSTH----HHHTSCHHHHHHHTTCEEECCCCBHHH
T ss_pred             hCCCC---------CcCC--EEEEEEECCch----HHHHhCHHhhhcCCCceEEeCCCCHHH
Confidence            42100         0012  66666666521    014567888899886 48888887765

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.43  E-value=1.4e-13  Score=114.23  Aligned_cols=144  Identities=20%  Similarity=0.247  Sum_probs=88.1

Q ss_pred             ceeechhhHHhhheeee-EecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC----------------
Q psy5910           5 RHIIGQHETKKIVSVGV-YNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~----------------   67 (225)
                      +.++|++++++.+...+ ..              ...++++|+||+||||||+++++++.+..+                
T Consensus        14 ~~~vg~~~~~~~l~~~~~~~--------------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~   79 (354)
T 1sxj_E           14 NALSHNEELTNFLKSLSDQP--------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS   79 (354)
T ss_dssp             GGCCSCHHHHHHHHTTTTCT--------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------
T ss_pred             HHhcCCHHHHHHHHHHHhhC--------------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc
Confidence            34689999999887765 11              112358899999999999999999964211                


Q ss_pred             -------------eEEeccCcccccCccCCcHHHHHHHHHHhcch--hhh--------hhCCCEEEEcchhhhccccccc
Q psy5910          68 -------------IIVVDATSFTEAGYVGDDVESIIQKLLHECDY--DVE--------LAEQSIIYIDEIDKISKKTDVV  124 (225)
Q Consensus        68 -------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~--------~~~~~vl~iDEid~l~~~~~~~  124 (225)
                                   ++.+++...     .... ...++..+.....  .+.        ...+.|++|||++.+.+.    
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~----  149 (354)
T 1sxj_E           80 NRKLELNVVSSPYHLEITPSDM-----GNND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD----  149 (354)
T ss_dssp             ------CCEECSSEEEECCC---------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH----
T ss_pred             cccceeeeecccceEEecHhhc-----CCcc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHH----
Confidence                         111211110     0011 1112232222110  000        235679999999997655    


Q ss_pred             CCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         125 SGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       125 ~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                               .++.|++.|+...             .+  ..+|.+||.       +..+.+++++|+ ..+.|+.|+.++
T Consensus       150 ---------~~~~L~~~le~~~-------------~~--~~~Il~t~~-------~~~l~~~l~sR~-~~~~~~~~~~~~  197 (354)
T 1sxj_E          150 ---------AQAALRRTMEKYS-------------KN--IRLIMVCDS-------MSPIIAPIKSQC-LLIRCPAPSDSE  197 (354)
T ss_dssp             ---------HHHHHHHHHHHST-------------TT--EEEEEEESC-------SCSSCHHHHTTS-EEEECCCCCHHH
T ss_pred             ---------HHHHHHHHHHhhc-------------CC--CEEEEEeCC-------HHHHHHHHHhhc-eEEecCCcCHHH
Confidence                     7899999998632             12  455555555       457888999998 558888888765

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.43  E-value=2.3e-13  Score=113.61  Aligned_cols=159  Identities=18%  Similarity=0.275  Sum_probs=100.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh------CCCeEEeccCcccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII------NVPIIVVDATSFTE   78 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~------~~~~~~~~~~~~~~   78 (225)
                      +.++|+++.++.+...+......          .....++|+||+|||||++++.+++.+      +.+++.+++.....
T Consensus        20 ~~~~gr~~e~~~l~~~l~~~~~~----------~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~   89 (386)
T 2qby_A           20 DELPHREDQIRKIASILAPLYRE----------EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT   89 (386)
T ss_dssp             SCCTTCHHHHHHHHHSSGGGGGT----------CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred             CCCCChHHHHHHHHHHHHHHHcC----------CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence            56899999999998877322111          233578899999999999999999988      77888888753211


Q ss_pred             c---------------CccCCcHHHHHHHHHHhcchhhhh-hCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHH
Q psy5910          79 A---------------GYVGDDVESIIQKLLHECDYDVEL-AEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLI  142 (225)
Q Consensus        79 ~---------------~~~g~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l  142 (225)
                      .               ...+.........++...    .. ..+.+|+|||++.+....+         ......|+..+
T Consensus        90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l----~~~~~~~vlilDE~~~l~~~~~---------~~~l~~l~~~~  156 (386)
T 2qby_A           90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAV----RDYGSQVVIVLDEIDAFVKKYN---------DDILYKLSRIN  156 (386)
T ss_dssp             HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHH----HTCCSCEEEEEETHHHHHHSSC---------STHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH----hccCCeEEEEEcChhhhhccCc---------CHHHHHHhhch
Confidence            0               012222233333332221    22 2378999999999985421         11567777777


Q ss_pred             hcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc-ccccccccccc
Q psy5910         143 EGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ-ETNFLEKLNNN  204 (225)
Q Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~-~i~~~~~~~~~  204 (225)
                      +...            ..+  +.+|.++|..-    -...+++.+.+||.. .+.+++++.++
T Consensus       157 ~~~~------------~~~--~~~I~~~~~~~----~~~~~~~~~~~r~~~~~i~l~~l~~~~  201 (386)
T 2qby_A          157 SEVN------------KSK--ISFIGITNDVK----FVDLLDPRVKSSLSEEEIIFPPYNAEE  201 (386)
T ss_dssp             HSCC------------C----EEEEEEESCGG----GGGGCTTHHHHTTTTEEEEECCCCHHH
T ss_pred             hhcC------------CCe--EEEEEEECCCC----hHhhhCHHHhccCCCeeEEeCCCCHHH
Confidence            6420            112  66666666521    014577888899865 58888887765

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=99.42  E-value=4.3e-13  Score=114.60  Aligned_cols=127  Identities=15%  Similarity=0.286  Sum_probs=80.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchh--hhhh-CCCEEEEc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYD--VELA-EQSIIYID  112 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~-~~~vl~iD  112 (225)
                      .+++|+||||||||+||+++++.+     +.+++++++..+..         .....+.......  .... .+.+||||
T Consensus       131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~vL~ID  201 (440)
T 2z4s_A          131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN---------DLVDSMKEGKLNEFREKYRKKVDILLID  201 (440)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHH---------HHHHHHHTTCHHHHHHHHTTTCSEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH---------HHHHHHHcccHHHHHHHhcCCCCEEEEe
Confidence            589999999999999999999988     78888888766421         1111110000000  0113 67899999


Q ss_pred             chhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc
Q psy5910         113 EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN  192 (225)
Q Consensus       113 Eid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~  192 (225)
                      |++.+....           ..++.|+..++....           ...  .+++.+.+.+.-    ...+++.+++||.
T Consensus       202 Ei~~l~~~~-----------~~q~~l~~~l~~l~~-----------~~~--~iIitt~~~~~~----l~~l~~~L~sR~~  253 (440)
T 2z4s_A          202 DVQFLIGKT-----------GVQTELFHTFNELHD-----------SGK--QIVICSDREPQK----LSEFQDRLVSRFQ  253 (440)
T ss_dssp             CGGGGSSCH-----------HHHHHHHHHHHHHHT-----------TTC--EEEEEESSCGGG----CSSCCHHHHHHHH
T ss_pred             CcccccCCh-----------HHHHHHHHHHHHHHH-----------CCC--eEEEEECCCHHH----HHHHHHHHHhhcc
Confidence            999998631           257778887764210           011  445554444210    1237899999996


Q ss_pred             --cccccccccccc
Q psy5910         193 --QETNFLEKLNNN  204 (225)
Q Consensus       193 --~~i~~~~~~~~~  204 (225)
                        ..+.++.|+.+.
T Consensus       254 ~g~~i~l~~p~~e~  267 (440)
T 2z4s_A          254 MGLVAKLEPPDEET  267 (440)
T ss_dssp             SSBCCBCCCCCHHH
T ss_pred             CCeEEEeCCCCHHH
Confidence              568888887765

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=99.40  E-value=6.1e-13  Score=103.96  Aligned_cols=122  Identities=14%  Similarity=0.170  Sum_probs=77.4

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDK  116 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~  116 (225)
                      ..+++|+||||||||++|+++++.+   +.++..+++..+... +.         ..+.      ....+.+++|||++.
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~------~~~~~~vliiDe~~~  115 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASI-ST---------ALLE------GLEQFDLICIDDVDA  115 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGS-CG---------GGGT------TGGGSSEEEEETGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH-HH---------HHHH------hccCCCEEEEecccc
Confidence            4689999999999999999999887   367888887765431 10         0001      124578999999999


Q ss_pred             hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcc--cc
Q psy5910         117 ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRIN--QE  194 (225)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~--~~  194 (225)
                      +....           ..++.|+.+++....           ...  ..+|.+++...   .....+++++.+||.  ..
T Consensus       116 ~~~~~-----------~~~~~l~~~l~~~~~-----------~~~--~~ii~~~~~~~---~~~~~~~~~l~~r~~~~~~  168 (242)
T 3bos_A          116 VAGHP-----------LWEEAIFDLYNRVAE-----------QKR--GSLIVSASASP---MEAGFVLPDLVSRMHWGLT  168 (242)
T ss_dssp             GTTCH-----------HHHHHHHHHHHHHHH-----------HCS--CEEEEEESSCT---TTTTCCCHHHHHHHHHSEE
T ss_pred             ccCCH-----------HHHHHHHHHHHHHHH-----------cCC--CeEEEEcCCCH---HHHHHhhhhhhhHhhcCce
Confidence            87551           136677777764210           001  32333333210   011245588999986  66


Q ss_pred             cccccccccc
Q psy5910         195 TNFLEKLNNN  204 (225)
Q Consensus       195 i~~~~~~~~~  204 (225)
                      +.++.|+.+.
T Consensus       169 i~l~~~~~~~  178 (242)
T 3bos_A          169 YQLQPMMDDE  178 (242)
T ss_dssp             EECCCCCGGG
T ss_pred             EEeCCCCHHH
Confidence            8888888765

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=99.40  E-value=4.4e-13  Score=112.78  Aligned_cols=116  Identities=24%  Similarity=0.418  Sum_probs=80.3

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCcccccCccCCcHHHHHHHHHH-----------hcchhhhhhC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSFTEAGYVGDDVESIIQKLLH-----------ECDYDVELAE  105 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~~~~~~~  105 (225)
                      ..+|+++|++||||+++|++++...+   .+|+.++|+.+...        -.-..+|.           ...+.+..+.
T Consensus       160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~--------~~~~elfg~~~g~~tga~~~~~g~~~~a~  231 (387)
T 1ny5_A          160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRD--------IFEAELFGYEKGAFTGAVSSKEGFFELAD  231 (387)
T ss_dssp             CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHH--------HHHHHHHCBCTTSSTTCCSCBCCHHHHTT
T ss_pred             CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHH--------HHHHHhcCCCCCCCCCcccccCCceeeCC
Confidence            45789999999999999999998874   68999999876431        01111221           1123445568


Q ss_pred             CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHH
Q psy5910         106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIEN  185 (225)
Q Consensus       106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~  185 (225)
                      ++++||||++.+...             +|..|+++|+.....  ..++......+  +.+|++||.         ++.+
T Consensus       232 ~gtlfldei~~l~~~-------------~q~~Ll~~l~~~~~~--~~g~~~~~~~~--~rii~at~~---------~l~~  285 (387)
T 1ny5_A          232 GGTLFLDEIGELSLE-------------AQAKLLRVIESGKFY--RLGGRKEIEVN--VRILAATNR---------NIKE  285 (387)
T ss_dssp             TSEEEEESGGGCCHH-------------HHHHHHHHHHHSEEC--CBTCCSBEECC--CEEEEEESS---------CHHH
T ss_pred             CcEEEEcChhhCCHH-------------HHHHHHHHHhcCcEE--eCCCCceeecc--EEEEEeCCC---------CHHH
Confidence            899999999999987             899999999864322  12222111223  788999988         6666


Q ss_pred             HHHh
Q psy5910         186 FIIN  189 (225)
Q Consensus       186 al~~  189 (225)
                      .+..
T Consensus       286 ~~~~  289 (387)
T 1ny5_A          286 LVKE  289 (387)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            6543

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=99.34  E-value=1.1e-12  Score=109.54  Aligned_cols=108  Identities=21%  Similarity=0.406  Sum_probs=74.6

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCC--eEEeccCcccccCccCCcHHHHHHHHHHh-----------cchhhhhhCC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVP--IIVVDATSFTEAGYVGDDVESIIQKLLHE-----------CDYDVELAEQ  106 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----------~~~~~~~~~~  106 (225)
                      ..+++++|++||||+++|++++...+..  |+.++|..+.+..        ....+|..           ..+.+..+.+
T Consensus       152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~--------~~~~lfg~~~g~~tga~~~~~g~~~~a~~  223 (368)
T 3dzd_A          152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQEL--------AESELFGHEKGAFTGALTRKKGKLELADQ  223 (368)
T ss_dssp             CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTT--------HHHHHHEECSCSSSSCCCCEECHHHHTTT
T ss_pred             chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHH--------HHHHhcCccccccCCcccccCChHhhcCC
Confidence            3579999999999999999999988543  9999998764311        01122211           1233455688


Q ss_pred             CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcc
Q psy5910         107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      ++|||||++.+.+.             +|..|+++|+.....  ..++......+  +.+|++||.
T Consensus       224 gtlfldei~~l~~~-------------~Q~~Ll~~l~~~~~~--~~g~~~~~~~~--~rii~at~~  272 (368)
T 3dzd_A          224 GTLFLDEVGELDQR-------------VQAKLLRVLETGSFT--RLGGNQKIEVD--IRVISATNK  272 (368)
T ss_dssp             SEEEEETGGGSCHH-------------HHHHHHHHHHHSEEC--CBTCCCBEECC--CEEEEEESS
T ss_pred             CeEEecChhhCCHH-------------HHHHHHHHHHhCCcc--cCCCCcceeee--eEEEEecCC
Confidence            99999999999988             899999999864322  11111111122  778888887

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.19  E-value=2.1e-11  Score=121.61  Aligned_cols=144  Identities=16%  Similarity=0.118  Sum_probs=83.1

Q ss_pred             CCcEEEEcCCCCcHHHHHHH-HHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhc-c------hhh-h---hhCCC
Q psy5910          40 KSNILLVGPTGCGKTLMVKT-LAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC-D------YDV-E---LAEQS  107 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~-ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~------~~~-~---~~~~~  107 (225)
                      ..++||+||||||||++|+. +++..+.++..++++....        ...+...+... .      +.. .   ....+
T Consensus      1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts--------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~ 1338 (2695)
T 4akg_A         1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT--------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNL 1338 (2695)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC--------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC--------HHHHHHHHHHHhhhccccCCccccCCCCCceE
Confidence            46899999999999999954 4544466677777765432        11222222221 0      000 0   22457


Q ss_pred             EEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHH
Q psy5910         108 IIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFI  187 (225)
Q Consensus       108 vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al  187 (225)
                      |+||||++.....+-       ..+.....|.++||.............. ..+  +.+|+|+|.+--  +.-..+++++
T Consensus      1339 VlFiDEinmp~~d~y-------g~q~~lelLRq~le~gg~yd~~~~~~~~-~~~--i~lIaA~Npp~~--gGR~~l~~rl 1406 (2695)
T 4akg_A         1339 VLFCDEINLPKLDKY-------GSQNVVLFLRQLMEKQGFWKTPENKWVT-IER--IHIVGACNPPTD--PGRIPMSERF 1406 (2695)
T ss_dssp             EEEEETTTCSCCCSS-------SCCHHHHHHHHHHHTSSEECTTTCCEEE-EES--EEEEEEECCTTS--TTCCCCCHHH
T ss_pred             EEEeccccccccccc-------CchhHHHHHHHHHhcCCEEEcCCCcEEE-ecC--EEEEEecCCCcc--CCCccCChhh
Confidence            999999987443321       1123567777788754322211111110 122  677777777210  1113799999


Q ss_pred             Hhhcccccccccccccc
Q psy5910         188 INRINQETNFLEKLNNN  204 (225)
Q Consensus       188 ~~Rf~~~i~~~~~~~~~  204 (225)
                      +||| ..+.++.|+.+.
T Consensus      1407 lRrf-~vi~i~~P~~~~ 1422 (2695)
T 4akg_A         1407 TRHA-AILYLGYPSGKS 1422 (2695)
T ss_dssp             HTTE-EEEECCCCTTTH
T ss_pred             hhee-eEEEeCCCCHHH
Confidence            9999 557888887765

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.15  E-value=6.7e-12  Score=94.30  Aligned_cols=110  Identities=18%  Similarity=0.207  Sum_probs=62.2

Q ss_pred             Ccceee---chhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCc
Q psy5910           3 LDRHII---GQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATS   75 (225)
Q Consensus         3 l~~~i~---G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~   75 (225)
                      +++.+.   ++.++++.+.+.+....          . .+...++|+||||||||++++++++.+    +..++.++..+
T Consensus         9 f~~~~~~~~~~~~~~~~~~~~~~~~~----------~-~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~   77 (180)
T 3ec2_A            9 LDTYHPKNVSQNRALLTIRVFVHNFN----------P-EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD   77 (180)
T ss_dssp             SSSCCCCSHHHHHHHHHHHHHHHSCC----------G-GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH
T ss_pred             cccccCCCHHHHHHHHHHHHHHHhcc----------c-cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH
Confidence            555554   45666666655442111          1 123578899999999999999999887    44555555443


Q ss_pred             ccccCccCCcHHHHHHHHHHhcc---hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910          76 FTEAGYVGDDVESIIQKLLHECD---YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        76 ~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                      +..          .+...+....   .......+.+++|||++.....           ...+..|..+++.
T Consensus        78 ~~~----------~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~-----------~~~~~~l~~ll~~  128 (180)
T 3ec2_A           78 LIF----------RLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLS-----------DWQRELISYIITY  128 (180)
T ss_dssp             HHH----------HHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCC-----------HHHHHHHHHHHHH
T ss_pred             HHH----------HHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCC-----------HHHHHHHHHHHHH
Confidence            321          1111111110   0011247889999999854322           1145566666654

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.07  E-value=4e-10  Score=82.16  Aligned_cols=70  Identities=19%  Similarity=0.315  Sum_probs=51.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      ..++|+||+|+|||+|++++++.+   +...+++++..+...            .         -...+.+++|||++.+
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~------------~---------~~~~~~lLilDE~~~~   95 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT------------D---------AAFEAEYLAVDQVEKL   95 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC------------G---------GGGGCSEEEEESTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH------------H---------HHhCCCEEEEeCcccc
Confidence            467799999999999999999988   666777777665421            0         0135789999999986


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                      ...             .+..|+.+++.
T Consensus        96 ~~~-------------~~~~l~~li~~  109 (149)
T 2kjq_A           96 GNE-------------EQALLFSIFNR  109 (149)
T ss_dssp             CSH-------------HHHHHHHHHHH
T ss_pred             ChH-------------HHHHHHHHHHH
Confidence            644             35667777653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=99.07  E-value=1.8e-10  Score=114.97  Aligned_cols=131  Identities=18%  Similarity=0.191  Sum_probs=87.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  120 (225)
                      .++++.||+|||||++++.+|+.+|.+++.++|.+-.+        ...+..++..+     ...++.+++||++++.+.
T Consensus       646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld--------~~~lg~~~~g~-----~~~Gaw~~~DE~nr~~~e  712 (2695)
T 4akg_A          646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD--------YQVLSRLLVGI-----TQIGAWGCFDEFNRLDEK  712 (2695)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC--------HHHHHHHHHHH-----HHHTCEEEEETTTSSCHH
T ss_pred             CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC--------hhHhhHHHHHH-----HhcCCEeeehhhhhcChH
Confidence            36889999999999999999999999999999977543        12223333321     235799999999999876


Q ss_pred             ccccCCCCCChHHHHHHH-------HHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910         121 TDVVSGKDVSGEGVQQSL-------LKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ  193 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~L-------l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~  193 (225)
                                   +...+       ...+......++..+.....+.+  +.++.|.|..+.  + ..++|+++++||..
T Consensus       713 -------------vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~--~~vfiT~NPgy~--g-~~eLP~~Lk~~Fr~  774 (2695)
T 4akg_A          713 -------------VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPH--TAVFITLNPGYN--G-RSELPENLKKSFRE  774 (2695)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTT--CEEEEEECCCSS--S-SCCCCHHHHTTEEE
T ss_pred             -------------HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCC--ceEEEEeCCCcc--C-cccccHHHHhheEE
Confidence                         45554       34443333333333332223333  788889987432  2 34899999999943


Q ss_pred             cccccccccc
Q psy5910         194 ETNFLEKLNN  203 (225)
Q Consensus       194 ~i~~~~~~~~  203 (225)
                       +.+..|+.+
T Consensus       775 -v~m~~Pd~~  783 (2695)
T 4akg_A          775 -FSMKSPQSG  783 (2695)
T ss_dssp             -EECCCCCHH
T ss_pred             -EEeeCCCHH
Confidence             555555544

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=99.01  E-value=1.6e-10  Score=88.25  Aligned_cols=36  Identities=28%  Similarity=0.506  Sum_probs=30.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      .+++|+||||||||++|+++++.+   +.+++.+++..+
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~   93 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPEL   93 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHH
Confidence            589999999999999999999988   567777776554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=98.98  E-value=2.9e-10  Score=95.76  Aligned_cols=168  Identities=14%  Similarity=0.124  Sum_probs=90.7

Q ss_pred             ceeechhhHHhhheeee-EecccceEeecccceeeeCCcEEE--EcCCCCcHHHHHHHHHHHh---------CCCeEEec
Q psy5910           5 RHIIGQHETKKIVSVGV-YNHYKRLFLLKSKNIYLEKSNILL--VGPTGCGKTLMVKTLAKII---------NVPIIVVD   72 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~vLl--~Gp~GtGKT~la~~ia~~~---------~~~~~~~~   72 (225)
                      +.++|.++.++.|...+ .......        ....+.+++  +||+|+|||++++.+++.+         +..++.++
T Consensus        22 ~~l~gR~~el~~l~~~l~~~~~~~~--------~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~   93 (412)
T 1w5s_A           22 PELRVRRGEAEALARIYLNRLLSGA--------GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN   93 (412)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSS--------CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             CCCCChHHHHHHHHHHHhHHHhcCC--------CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence            56788888888877655 3221110        012236778  9999999999999999876         34567777


Q ss_pred             cCccccc-----------C----ccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHH
Q psy5910          73 ATSFTEA-----------G----YVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQS  137 (225)
Q Consensus        73 ~~~~~~~-----------~----~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~  137 (225)
                      +......           +    ..+.+.......+....   .....+.+|+|||++.+.....       ........
T Consensus        94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~llvlDe~~~l~~~~~-------~~~~~l~~  163 (412)
T 1w5s_A           94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL---YVENHYLLVILDEFQSMLSSPR-------IAAEDLYT  163 (412)
T ss_dssp             GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH---HHHTCEEEEEEESTHHHHSCTT-------SCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEEeCHHHHhhccC-------cchHHHHH
Confidence            6322110           0    00111122222221111   0123577999999999975310       01225566


Q ss_pred             HHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHH---HHHHhhcccccccccccccc
Q psy5910         138 LLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIE---NFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       138 Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~---~al~~Rf~~~i~~~~~~~~~  204 (225)
                      |+..++.....          ....++.+|.+++..-    -.+.++   +.+.+||...+.+++.+.++
T Consensus       164 l~~~~~~~~~~----------~~~~~v~lI~~~~~~~----~~~~l~~~~~~~~~~~~~~i~l~~l~~~e  219 (412)
T 1w5s_A          164 LLRVHEEIPSR----------DGVNRIGFLLVASDVR----ALSYMREKIPQVESQIGFKLHLPAYKSRE  219 (412)
T ss_dssp             HHTHHHHSCCT----------TSCCBEEEEEEEEETH----HHHHHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred             HHHHHHhcccC----------CCCceEEEEEEecccc----HHHHHhhhcchhhhhcCCeeeeCCCCHHH
Confidence            66666542100          0001266776665410    012345   66777776667777776654

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.97  E-value=4.9e-10  Score=85.21  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=65.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhccc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~  120 (225)
                      .++|++||||||||++|.++++.+......+...  .. .+.           +.      ......+++|||++.....
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans--~s-~f~-----------l~------~l~~~kIiiLDEad~~~~~  118 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNS--TS-HFW-----------LE------PLTDTKVAMLDDATTTCWT  118 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCS--SS-CGG-----------GG------GGTTCSSEEEEEECHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEec--cc-hhh-----------hc------ccCCCCEEEEECCCchhHH
Confidence            4688999999999999999999985433211100  00 000           00      1123469999999864322


Q ss_pred             ccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccc
Q psy5910         121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEK  200 (225)
Q Consensus       121 ~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~  200 (225)
                                  .+...+..+|++....+.....  .+.+.+..-+|.|||..+-.    +..-+.+.+|+. .+.|+.|
T Consensus       119 ------------~~d~~lrn~ldG~~~~iD~Khr--~~~~~~~~PlIITtN~~~~~----~~~~~~L~SRi~-~f~F~~~  179 (212)
T 1tue_A          119 ------------YFDTYMRNALDGNPISIDRKHK--PLIQLKCPPILLTTNIHPAK----DNRWPYLESRIT-VFEFPNA  179 (212)
T ss_dssp             ------------HHHHHCHHHHHTCCEEEC------CCEEECCCCEEEEESSCTTS----SSSCHHHHTSCE-EEECCSC
T ss_pred             ------------HHHHHHHHHhCCCcccHHHhhc--CccccCCCCEEEecCCCccc----ccchhhhhhhEE-EEEcCCC
Confidence                        1456677888875433221110  11111113567777773322    223367888863 2455533

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=98.97  E-value=1.2e-09  Score=105.24  Aligned_cols=135  Identities=11%  Similarity=0.114  Sum_probs=81.9

Q ss_pred             eeechhhHHhhheeeeEecccc----------eEeecc------cce----------eee-CCcEEEEcCCCCcHHHHHH
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKR----------LFLLKS------KNI----------YLE-KSNILLVGPTGCGKTLMVK   58 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~----------~~~~~~------~~~----------~~~-~~~vLl~Gp~GtGKT~la~   58 (225)
                      .|.|.+++|+.+.+++.++...          ....+.      .+.          ..| .+.+|++||||||||+||+
T Consensus      1021 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~GKT~la~ 1100 (1706)
T 3cmw_A         1021 SMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTL 1100 (1706)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHH
T ss_pred             ecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCChHHHHH
Confidence            4578888888777777665532          001111      011          022 2348899999999999999


Q ss_pred             HHHHHh---CCCeEEeccCcccc-----------cCccCC---cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccc
Q psy5910          59 TLAKII---NVPIIVVDATSFTE-----------AGYVGD---DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT  121 (225)
Q Consensus        59 ~ia~~~---~~~~~~~~~~~~~~-----------~~~~g~---~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~  121 (225)
                      +++.+.   +-+..+++.....+           ..|.++   ..++.++.++..+    +...++++|+||++++.+.+
T Consensus      1101 ~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a----r~~~~~~i~~d~~~al~~~~ 1176 (1706)
T 3cmw_A         1101 QVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA----RSGAVDVIVVDSVAALTPKA 1176 (1706)
T ss_dssp             HHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH----HHTCCSEEEESCGGGCCCHH
T ss_pred             HHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH----HhcCCeEEEeCchHhcCccc
Confidence            998766   56666666654321           124443   1355666666554    56689999999999999985


Q ss_pred             ccc---CCC-CCChHHHHHHHHHHHhc
Q psy5910         122 DVV---SGK-DVSGEGVQQSLLKLIEG  144 (225)
Q Consensus       122 ~~~---~~~-~~~~~~~~~~Ll~~l~~  144 (225)
                      ...   ... .....++.+.++..|++
T Consensus      1177 ~~~g~~~~~~~~~~~r~~~q~l~~~~~ 1203 (1706)
T 3cmw_A         1177 EIEGEIGDSHMGLAARMMSQAMRKLAG 1203 (1706)
T ss_dssp             HHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccHHHHHHHHHHHHHHh
Confidence            421   111 12334556677777764

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=98.78  E-value=2.2e-08  Score=76.34  Aligned_cols=126  Identities=11%  Similarity=0.096  Sum_probs=70.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH--------hC-CCeEEeccCcccccCc------------cCCcH-HHHHHHHHHhcch
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI--------IN-VPIIVVDATSFTEAGY------------VGDDV-ESIIQKLLHECDY   99 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~--------~~-~~~~~~~~~~~~~~~~------------~g~~~-~~~~~~~~~~~~~   99 (225)
                      -.|++|+||||||++|...+..        .| .+++..+...+.....            .++.. .......+.    
T Consensus         7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~----   82 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK----   82 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT----
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh----
Confidence            4679999999999998876433        23 6666666554432111            01100 001111110    


Q ss_pred             hhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCc
Q psy5910         100 DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGA  179 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~  179 (225)
                       .....++||+|||++.+.+.+.....       . ..++..|+...            +..  .-+|.+++.       
T Consensus        83 -~~~~~~~vliIDEAq~l~~~~~~~~e-------~-~rll~~l~~~r------------~~~--~~iil~tq~-------  132 (199)
T 2r2a_A           83 -KPENIGSIVIVDEAQDVWPARSAGSK-------I-PENVQWLNTHR------------HQG--IDIFVLTQG-------  132 (199)
T ss_dssp             -SGGGTTCEEEETTGGGTSBCCCTTCC-------C-CHHHHGGGGTT------------TTT--CEEEEEESC-------
T ss_pred             -ccccCceEEEEEChhhhccCccccch-------h-HHHHHHHHhcC------------cCC--eEEEEECCC-------
Confidence             02245899999999999765421110       0 12444444211            112  455556655       


Q ss_pred             cccHHHHHHhhccccccccccc
Q psy5910         180 FSGIENFIINRINQETNFLEKL  201 (225)
Q Consensus       180 ~~~l~~al~~Rf~~~i~~~~~~  201 (225)
                      ++.|+.++++|+...+.+..+.
T Consensus       133 ~~~l~~~lr~ri~~~~~l~~~~  154 (199)
T 2r2a_A          133 PKLLDQNLRTLVRKHYHIASNK  154 (199)
T ss_dssp             GGGBCHHHHTTEEEEEEEEECS
T ss_pred             HHHHhHHHHHHhheEEEEcCcc
Confidence            6789999999998887766643

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.75  E-value=8.2e-10  Score=90.00  Aligned_cols=37  Identities=24%  Similarity=0.496  Sum_probs=30.0

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSF   76 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~   76 (225)
                      ..+++|+||||||||+||+++++.+.    .++..+++..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l  192 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSF  192 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHH
Confidence            36899999999999999999998664    66776766544

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.71  E-value=4.2e-08  Score=79.69  Aligned_cols=73  Identities=16%  Similarity=0.280  Sum_probs=43.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc--CcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA--TSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKIS  118 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~  118 (225)
                      +.++|+||||||||+||..++...+.++.+++.  .+..+ .+. .+....+..+.+..    .. .+ +|+||+++.+.
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~-~~~-~~le~~l~~i~~~l----~~-~~-LLVIDsI~aL~  195 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYN-TDFNVFVDDIARAM----LQ-HR-VIVIDSLKNVI  195 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCB-CCHHHHHHHHHHHH----HH-CS-EEEEECCTTTC
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhh-hhh-cCHHHHHHHHHHHH----hh-CC-EEEEecccccc
Confidence            346799999999999999998765544333333  22211 122 33344444333322    22 23 99999999996


Q ss_pred             ccc
Q psy5910         119 KKT  121 (225)
Q Consensus       119 ~~~  121 (225)
                      ...
T Consensus       196 ~~~  198 (331)
T 2vhj_A          196 GAA  198 (331)
T ss_dssp             ---
T ss_pred             ccc
Confidence            553

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=98.67  E-value=8.9e-08  Score=75.84  Aligned_cols=27  Identities=30%  Similarity=0.567  Sum_probs=23.5

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      +.+++|+||||||||++|++||+.++.
T Consensus       104 ~n~~~l~GppgtGKt~~a~ala~~~~l  130 (267)
T 1u0j_A          104 RNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence            347999999999999999999997644

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.61  E-value=1.4e-07  Score=95.38  Aligned_cols=131  Identities=15%  Similarity=0.153  Sum_probs=84.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT  121 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~  121 (225)
                      +..+.||+|||||++++.+|+.+|.+++.++|.+-.+  |      ..+..+|.-.     ...++-.+|||++++... 
T Consensus       606 gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d--~------~~~g~i~~G~-----~~~GaW~cfDEfNrl~~~-  671 (3245)
T 3vkg_A          606 GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFD--L------QAMSRIFVGL-----CQCGAWGCFDEFNRLEER-  671 (3245)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCC--H------HHHHHHHHHH-----HHHTCEEEEETTTSSCHH-
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCC--H------HHHHHHHhhH-----hhcCcEEEehhhhcCCHH-
Confidence            4568999999999999999999999999999977543  2      1223333221     235889999999999866 


Q ss_pred             cccCCCCCChHHHHHHHHHHHh-------cCCcCcccc-ccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccc
Q psy5910         122 DVVSGKDVSGEGVQQSLLKLIE-------GVNLSITSL-AEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQ  193 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~Ll~~l~-------~~~~~~~~~-~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~  193 (225)
                                  +...+.+.+.       .....+.-. +....-+.  .+.++.|.|.-+.  + ..++|+++++||..
T Consensus       672 ------------vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~--~~~vfiTmNpgY~--g-r~eLP~nLk~lFr~  734 (3245)
T 3vkg_A          672 ------------ILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQ--DMGIFVTMNPGYA--G-RSNLPDNLKKLFRS  734 (3245)
T ss_dssp             ------------HHHHHHHHHHHHHHHHHHTCSEECCC---CEECCT--TCEEEECBCCCGG--G-CCCSCHHHHTTEEE
T ss_pred             ------------HHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecC--CeEEEEEeCCCcc--C-cccChHHHHhhcEE
Confidence                        4555444333       111111111 11111122  2788888887442  2 24899999999955


Q ss_pred             ccccccccccc
Q psy5910         194 ETNFLEKLNNN  204 (225)
Q Consensus       194 ~i~~~~~~~~~  204 (225)
                       +.+..|+.+.
T Consensus       735 -v~m~~Pd~~~  744 (3245)
T 3vkg_A          735 -MAMIKPDREM  744 (3245)
T ss_dssp             -EECCSCCHHH
T ss_pred             -EEEeCCCHHH
Confidence             6666666543

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=98.59  E-value=1.6e-07  Score=77.03  Aligned_cols=52  Identities=17%  Similarity=0.270  Sum_probs=41.2

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT   74 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~   74 (225)
                      +.++|.++.++.|.+.+.                ..+.++++||+|+|||++++.+++..+  ++++++.
T Consensus        12 ~~~~gR~~el~~L~~~l~----------------~~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~   63 (350)
T 2qen_A           12 EDIFDREEESRKLEESLE----------------NYPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR   63 (350)
T ss_dssp             GGSCSCHHHHHHHHHHHH----------------HCSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred             HhcCChHHHHHHHHHHHh----------------cCCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence            457899999998877661                124788999999999999999998875  6666654

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=98.55  E-value=4.2e-08  Score=99.12  Aligned_cols=144  Identities=15%  Similarity=0.179  Sum_probs=80.1

Q ss_pred             CCcEEEEcCCCCcHHHHHHH-HHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHh-cc-------hhh-hh---hCC
Q psy5910          40 KSNILLVGPTGCGKTLMVKT-LAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHE-CD-------YDV-EL---AEQ  106 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~-ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~-------~~~-~~---~~~  106 (225)
                      ..++||+||||||||++++. +++..+.+++.++++.-.+        ...+...+.. ..       |.+ ..   ...
T Consensus      1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt--------a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~ 1375 (3245)
T 3vkg_A         1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT--------PELLLKTFDHHCEYKRTPSGETVLRPTQLGKW 1375 (3245)
T ss_dssp             TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC--------HHHHHHHHHHHEEEEECTTSCEEEEESSTTCE
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC--------HHHHHHHHhhcceEEeccCCCcccCCCcCCce
Confidence            35899999999999977655 4444455677777765432        2222222221 10       111 11   233


Q ss_pred             CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHH
Q psy5910         107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENF  186 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~a  186 (225)
                      .|+|+||++...+..       ...+.....|.++||....-.+...... ...+  +.+|+|.|.+--  +....+++.
T Consensus      1376 ~VlFiDDiNmp~~D~-------yGtQ~~ielLrqlld~~g~yd~~~~~~~-~i~d--~~~vaamnPp~~--gGr~~l~~R 1443 (3245)
T 3vkg_A         1376 LVVFCDEINLPSTDK-------YGTQRVITFIRQMVEKGGFWRTSDHTWI-KLDK--IQFVGACNPPTD--AGRVQLTHR 1443 (3245)
T ss_dssp             EEEEETTTTCCCCCT-------TSCCHHHHHHHHHHHHSEEEETTTTEEE-EESS--EEEEEEECCTTS--TTCCCCCHH
T ss_pred             EEEEecccCCCCccc-------cccccHHHHHHHHHHcCCeEECCCCeEE-EecC--eEEEEEcCCCCC--CCCccCCHH
Confidence            699999999754431       1112366778888885443322111111 1123  666677666211  112469999


Q ss_pred             HHhhcccccccccccccc
Q psy5910         187 IINRINQETNFLEKLNNN  204 (225)
Q Consensus       187 l~~Rf~~~i~~~~~~~~~  204 (225)
                      ++|||.. +.++.|+.+.
T Consensus      1444 f~r~F~v-i~i~~ps~es 1460 (3245)
T 3vkg_A         1444 FLRHAPI-LLVDFPSTSS 1460 (3245)
T ss_dssp             HHTTCCE-EECCCCCHHH
T ss_pred             HHhhceE-EEeCCCCHHH
Confidence            9999966 4555555443

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.51  E-value=1e-06  Score=65.90  Aligned_cols=26  Identities=31%  Similarity=0.590  Sum_probs=22.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      .+.|+||+|||||||++.++..++..
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~i~   27 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence            46799999999999999999988643

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=98.40  E-value=9.3e-07  Score=72.50  Aligned_cols=53  Identities=17%  Similarity=0.283  Sum_probs=43.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS   75 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~   75 (225)
                      +.++|.++.++.|.. +.                . +.++++||+|+|||+|++.+++..+..++++++..
T Consensus        13 ~~~~gR~~el~~L~~-l~----------------~-~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~   65 (357)
T 2fna_A           13 KDFFDREKEIEKLKG-LR----------------A-PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK   65 (357)
T ss_dssp             GGSCCCHHHHHHHHH-TC----------------S-SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             HHhcChHHHHHHHHH-hc----------------C-CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence            567899988888877 61                1 47889999999999999999998877777777654

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=98.39  E-value=7.3e-07  Score=87.28  Aligned_cols=79  Identities=16%  Similarity=0.217  Sum_probs=51.1

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc---CccC-----------CcHHHHHHHHHHhcchhh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA---GYVG-----------DDVESIIQKLLHECDYDV  101 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~---~~~g-----------~~~~~~~~~~~~~~~~~~  101 (225)
                      +..+++|+||||||||+||.+++...   +..+.+++.......   ...|           .+.+..+..+..    .+
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~----lv 1501 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA----LA 1501 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH----HH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHH----HH
Confidence            34578899999999999999987765   556777776543110   0011           122233333322    23


Q ss_pred             hhhCCCEEEEcchhhhcccc
Q psy5910         102 ELAEQSIIYIDEIDKISKKT  121 (225)
Q Consensus       102 ~~~~~~vl~iDEid~l~~~~  121 (225)
                      +...+.+|+|||++.+.+..
T Consensus      1502 r~~~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A         1502 RSGAVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp             HHTCCSEEEESCGGGCCCHH
T ss_pred             hcCCCCEEEEcChhHhcccc
Confidence            45689999999999888753

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=4.9e-07  Score=68.63  Aligned_cols=42  Identities=33%  Similarity=0.472  Sum_probs=28.4

Q ss_pred             ecccceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          31 LKSKNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        31 ~~~~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .++.++..+++ .++|+|||||||||+++.+++.++.+++..+
T Consensus        15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d   57 (199)
T 3vaa_A           15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD   57 (199)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred             CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence            44556666554 5669999999999999999999998887554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=98.21  E-value=1e-06  Score=65.79  Aligned_cols=32  Identities=38%  Similarity=0.487  Sum_probs=28.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      ..++|+|+|||||||+|+.+++.++.+++..+
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d   37 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD   37 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            46889999999999999999999998887654

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=98.20  E-value=1.4e-06  Score=64.66  Aligned_cols=32  Identities=25%  Similarity=0.468  Sum_probs=28.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      .++|+|+||+||||+++.+++.++.+++.++.
T Consensus         5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~   36 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV   36 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence            57799999999999999999999988876544

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.13  E-value=4.5e-05  Score=58.58  Aligned_cols=32  Identities=31%  Similarity=0.360  Sum_probs=24.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      .++|+||||+|||++++.++..+   +.++..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~   59 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT   59 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence            45599999999999999998654   455555543

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.12  E-value=1.6e-05  Score=60.74  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=27.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS   75 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~   75 (225)
                      -++++||||+|||++++.++...+.+.++++...
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            4559999999999999999885566777776644

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=98.11  E-value=2.5e-06  Score=62.75  Aligned_cols=31  Identities=35%  Similarity=0.521  Sum_probs=26.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .|+|.|+|||||||+|+.+++.++.+++..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d   33 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS   33 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence            4679999999999999999999988776544

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.10  E-value=3.2e-06  Score=69.89  Aligned_cols=46  Identities=26%  Similarity=0.534  Sum_probs=39.8

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|+....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus         8 ~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A            8 GHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCC
Confidence            34566677778889999999998887 99999999999999999876

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.08  E-value=3.7e-06  Score=65.13  Aligned_cols=46  Identities=17%  Similarity=0.376  Sum_probs=38.0

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...|+....+++.++..+.+.++ |.||+|+|||||.+.++....
T Consensus         9 ~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~   55 (224)
T 2pcj_A            9 NIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA   55 (224)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred             eEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4455565566788899999998877 999999999999999998763

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.07  E-value=2.3e-06  Score=63.44  Aligned_cols=30  Identities=30%  Similarity=0.562  Sum_probs=26.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.|+|||||||+|+.|++.++.+++..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~   35 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS   35 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence            578999999999999999999998876543

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.07  E-value=4.1e-06  Score=69.77  Aligned_cols=47  Identities=23%  Similarity=0.567  Sum_probs=40.2

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|.....+++.++..+.+.++ |.||+|||||||.+.|+....
T Consensus         7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~   54 (381)
T 3rlf_A            7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET   54 (381)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence            34566677778889999999998888 999999999999999998763

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.06  E-value=3.2e-06  Score=63.04  Aligned_cols=31  Identities=35%  Similarity=0.573  Sum_probs=27.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .|+|.|+|||||||+|+.+++.++.+++..+
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D   34 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   34 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence            5789999999999999999999998876544

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.06  E-value=3.2e-06  Score=62.19  Aligned_cols=32  Identities=22%  Similarity=0.518  Sum_probs=28.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .+++|.|+|||||||+++.+++.++.+++..+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D   39 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD   39 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence            47889999999999999999999999886543

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.06  E-value=2.7e-06  Score=63.25  Aligned_cols=32  Identities=44%  Similarity=0.542  Sum_probs=27.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      ..|+|+|+||+||||+++.+++.++.+++..+
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d   43 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELASKSGLKYINVG   43 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence            46889999999999999999999988766543

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.05  E-value=4.4e-06  Score=66.42  Aligned_cols=46  Identities=17%  Similarity=0.475  Sum_probs=39.6

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|.....+++.++..+.+.++ |.||+|+|||||++.++...
T Consensus        15 ~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           15 SHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             EeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34566677778889999999998887 99999999999999999876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.05  E-value=3.2e-06  Score=62.35  Aligned_cols=28  Identities=43%  Similarity=0.759  Sum_probs=24.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      .+.|+|||||||||+++.++..++.+++
T Consensus         6 ~i~l~G~~GsGKSTl~~~La~~l~~~~i   33 (173)
T 1kag_A            6 NIFLVGPMGAGKSTIGRQLAQQLNMEFY   33 (173)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            5779999999999999999999886544

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.03  E-value=4.8e-06  Score=66.06  Aligned_cols=46  Identities=15%  Similarity=0.398  Sum_probs=38.5

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...|.....+++.++..+.+.++ |.||+|+|||||.+.|+..+.
T Consensus        11 ~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~   57 (262)
T 1b0u_A           11 DLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK   57 (262)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             eEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            4555566667788899999998877 999999999999999998763

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.01  E-value=3.2e-06  Score=63.37  Aligned_cols=35  Identities=29%  Similarity=0.530  Sum_probs=29.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      .+.|.||||+||||+++.++...+...+.++..++
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~   45 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   45 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence            45599999999999999999987777777776544

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.01  E-value=1.3e-05  Score=60.05  Aligned_cols=30  Identities=23%  Similarity=0.355  Sum_probs=21.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~   71 (225)
                      -++++||+|+||||++..++..+   +...+.+
T Consensus         5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            45699999999999985555433   4554444

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.01  E-value=6e-06  Score=65.31  Aligned_cols=46  Identities=17%  Similarity=0.491  Sum_probs=38.5

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|.....+++.++..+.+.++ |.||+|+|||||.+.++..+
T Consensus        11 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           11 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34555666667888999999998777 99999999999999999876

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.01  E-value=7.8e-06  Score=64.37  Aligned_cols=44  Identities=30%  Similarity=0.467  Sum_probs=37.0

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~   63 (225)
                      .+...|.....+++.++..+.+.++ |.||+|+|||||++.|+..
T Consensus         8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A            8 DLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4455566666788899999998777 9999999999999999985

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.00  E-value=6.8e-06  Score=64.31  Aligned_cols=45  Identities=22%  Similarity=0.488  Sum_probs=37.7

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|+|||||.+.++..+
T Consensus        11 ~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           11 SLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4555566666788899999988777 99999999999999999876

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.99  E-value=4.7e-06  Score=63.15  Aligned_cols=30  Identities=37%  Similarity=0.667  Sum_probs=26.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .|+|.|+|||||||+|+.+++.++.+++..
T Consensus        22 ~I~l~G~~GsGKST~a~~La~~l~~~~i~~   51 (201)
T 2cdn_A           22 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST   51 (201)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            577999999999999999999998887654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.99  E-value=7.6e-06  Score=67.75  Aligned_cols=45  Identities=24%  Similarity=0.506  Sum_probs=37.8

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus         8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A            8 NLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCC
Confidence            4555566666788899999988777 99999999999999999876

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.99  E-value=8e-06  Score=67.98  Aligned_cols=45  Identities=22%  Similarity=0.595  Sum_probs=38.0

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus         8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1            8 DVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             eEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCC
Confidence            4555566666788899999988877 99999999999999999876

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.99  E-value=3.5e-06  Score=63.06  Aligned_cols=31  Identities=35%  Similarity=0.448  Sum_probs=26.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH-hCCCeEEe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI-INVPIIVV   71 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~-~~~~~~~~   71 (225)
                      ..++|+|+|||||||+++.+++. ++.+++..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~   42 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV   42 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence            35779999999999999999998 67666543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.98  E-value=7e-06  Score=65.14  Aligned_cols=47  Identities=21%  Similarity=0.502  Sum_probs=38.8

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|.....+++.++..+.+.++ |.||+|+|||||++.|+..+.
T Consensus        28 ~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~   75 (263)
T 2olj_A           28 HQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED   75 (263)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence            34555666667788999999988777 999999999999999998763

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.98  E-value=5.9e-06  Score=65.17  Aligned_cols=32  Identities=34%  Similarity=0.489  Sum_probs=27.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      .+++.|||||||||+|+.+|+.++.+++..+.
T Consensus         3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~   34 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR   34 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred             EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence            36799999999999999999999988776544

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.97  E-value=7.2e-06  Score=67.96  Aligned_cols=46  Identities=24%  Similarity=0.550  Sum_probs=38.0

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...|+....+++.++..+.+.++ |.||+|||||||.+.|+....
T Consensus         8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~   54 (362)
T 2it1_A            8 NIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK   54 (362)
T ss_dssp             EEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             eEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence            4555566556788889999988877 999999999999999998763

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.97  E-value=8.2e-06  Score=67.88  Aligned_cols=45  Identities=24%  Similarity=0.584  Sum_probs=38.2

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus        16 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           16 NLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence            4556666666788899999988877 99999999999999999876

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.97  E-value=9.2e-06  Score=64.62  Aligned_cols=45  Identities=20%  Similarity=0.345  Sum_probs=37.8

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~   63 (225)
                      +.+...|.....+++.++..+.+.++ |.||+|+|||||++.|+..
T Consensus        24 ~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           24 KDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             EeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence            34555666667788999999988777 9999999999999999986

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.96  E-value=5.4e-06  Score=62.10  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=26.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.|+||+||||+++.+++.++.+++..
T Consensus         7 ~I~l~G~~GsGKST~~~~L~~~l~~~~i~~   36 (193)
T 2rhm_A            7 LIIVTGHPATGKTTLSQALATGLRLPLLSK   36 (193)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence            567999999999999999999998876654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.95  E-value=8.8e-06  Score=65.13  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=38.1

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.....+++.++..+.+.++ |.||+|+|||||.+.|+..+
T Consensus        26 ~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           26 QIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             EEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             eEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            4555666667788999999998777 99999999999999999876

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.95  E-value=1.8e-05  Score=67.80  Aligned_cols=47  Identities=26%  Similarity=0.414  Sum_probs=33.2

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +++---+|.+++..+...+.               .+.+.+++.|+||||||+++.++++.+
T Consensus        23 ~~~Ln~~Q~~av~~~~~~i~---------------~~~~~~li~G~aGTGKT~ll~~~~~~l   69 (459)
T 3upu_A           23 FDDLTEGQKNAFNIVMKAIK---------------EKKHHVTINGPAGTGATTLTKFIIEAL   69 (459)
T ss_dssp             SSCCCHHHHHHHHHHHHHHH---------------SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHh---------------cCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            33333467777776655441               122478899999999999999998877

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.95  E-value=7.3e-06  Score=62.13  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=26.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      ..++|.|+||+||||+|+.+++.++..++..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~   49 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIEG   49 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHHHHTCCEEEG
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCEEEeC
Confidence            3577999999999999999999998766553

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.95  E-value=7.9e-06  Score=62.83  Aligned_cols=45  Identities=29%  Similarity=0.567  Sum_probs=37.3

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...|+. ..+++.++..+.+.++ |.||+|+|||||.+.++..+.
T Consensus        15 ~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~   60 (214)
T 1sgw_A           15 DLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK   60 (214)
T ss_dssp             EEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            45555666 7788899999988776 999999999999999998763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.94  E-value=9.1e-06  Score=63.39  Aligned_cols=37  Identities=24%  Similarity=0.633  Sum_probs=32.7

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+.+.++ |.||+|||||||.+.++...
T Consensus        18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            35688899999998877 99999999999999999776

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.94  E-value=9.1e-06  Score=64.22  Aligned_cols=46  Identities=26%  Similarity=0.516  Sum_probs=38.6

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|+....+++.++..+.+.++ |.||+|+|||||.+.|+...
T Consensus        19 ~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           19 KDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence            34556666667788899999988777 99999999999999999876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.93  E-value=5.6e-06  Score=60.94  Aligned_cols=30  Identities=30%  Similarity=0.606  Sum_probs=26.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.|+|||||||+|+.+++.++.+++..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~   33 (173)
T 1e6c_A            4 PIFMVGARGCGMTTVGRELARALGYEFVDT   33 (173)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence            578999999999999999999998776543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.91  E-value=6e-06  Score=60.61  Aligned_cols=29  Identities=38%  Similarity=0.527  Sum_probs=24.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      -++|.|||||||||+|+.+ +.++.+++..
T Consensus         3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~   31 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL-KERGAKVIVM   31 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence            4679999999999999999 8888876654

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.91  E-value=8.1e-06  Score=67.47  Aligned_cols=45  Identities=24%  Similarity=0.502  Sum_probs=36.6

Q ss_pred             eeEecc-cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHY-KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~-~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...| +....+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus        19 ~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           19 GVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             EEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            445555 4445677888999988777 99999999999999999876

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.91  E-value=1.1e-05  Score=63.42  Aligned_cols=46  Identities=20%  Similarity=0.486  Sum_probs=37.5

Q ss_pred             eeeEecc--cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHY--KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~--~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|  .....+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus        11 ~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           11 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3455556  3456788889999998777 99999999999999999876

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.91  E-value=6.9e-06  Score=63.15  Aligned_cols=31  Identities=23%  Similarity=0.470  Sum_probs=26.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      ..++|.|+|||||||+|+.+++.++.+++..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   35 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT   35 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence            4678999999999999999999998765543

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.90  E-value=9.5e-06  Score=64.79  Aligned_cols=45  Identities=20%  Similarity=0.472  Sum_probs=37.0

Q ss_pred             eeEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.. ...++++++..+.+.++ |.||+|+|||||++.++..+
T Consensus        12 ~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           12 ELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             EEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence            45555543 45788899999998877 99999999999999999876

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.90  E-value=8.8e-06  Score=59.63  Aligned_cols=30  Identities=30%  Similarity=0.478  Sum_probs=26.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .|+|.|+|||||||+|+.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~   31 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV   31 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence            477999999999999999999999877654

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.90  E-value=8e-06  Score=62.54  Aligned_cols=30  Identities=27%  Similarity=0.476  Sum_probs=26.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.||||+||||+|+.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            477999999999999999999998776654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.90  E-value=7e-06  Score=61.64  Aligned_cols=31  Identities=19%  Similarity=0.318  Sum_probs=26.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      ..++|.|+|||||||+|+.+++.++.+++..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~   40 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST   40 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence            3567999999999999999999998765543

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.90  E-value=7.8e-06  Score=60.94  Aligned_cols=29  Identities=24%  Similarity=0.516  Sum_probs=24.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .++|.|+|||||||+++.+++.++.+++.
T Consensus         6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~   34 (186)
T 3cm0_A            6 AVIFLGPPGAGKGTQASRLAQELGFKKLS   34 (186)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence            57799999999999999999998865543

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.89  E-value=8.8e-06  Score=62.25  Aligned_cols=30  Identities=30%  Similarity=0.525  Sum_probs=26.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.||||+||||+|+.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~   31 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST   31 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence            477999999999999999999998876654

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.89  E-value=3.3e-06  Score=64.03  Aligned_cols=35  Identities=20%  Similarity=0.404  Sum_probs=27.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      .+.|.|||||||||+++.++..+   |...+.++...+
T Consensus        27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~   64 (200)
T 3uie_A           27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV   64 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence            34499999999999999999988   554446665544

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.88  E-value=7.3e-06  Score=61.37  Aligned_cols=29  Identities=14%  Similarity=0.287  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .|+|.|+|||||||+|+.+++.++.+++.
T Consensus         5 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~   33 (196)
T 1tev_A            5 VVFVLGGPGAGKGTQCARIVEKYGYTHLS   33 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            57799999999999999999999876544

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.88  E-value=6.8e-06  Score=64.76  Aligned_cols=36  Identities=36%  Similarity=0.558  Sum_probs=30.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT   77 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~   77 (225)
                      .++|.|+||+||||+|+.+++.++..++.+++..+.
T Consensus        34 ~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r   69 (253)
T 2p5t_B           34 AILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFR   69 (253)
T ss_dssp             EEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHH
Confidence            567999999999999999999998777778877653

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.87  E-value=1e-05  Score=66.79  Aligned_cols=44  Identities=27%  Similarity=0.551  Sum_probs=36.2

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|... .+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus         6 ~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A            6 SLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             EEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             EEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCC
Confidence            344555544 778888999988777 99999999999999999876

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.86  E-value=7.3e-06  Score=63.14  Aligned_cols=36  Identities=22%  Similarity=0.254  Sum_probs=22.5

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..++++++..+.+.++ |+||+|+|||||++.|+...
T Consensus        11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             -----------CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3456677777777666 99999999999999999977

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.86  E-value=1.1e-05  Score=67.46  Aligned_cols=46  Identities=17%  Similarity=0.391  Sum_probs=37.4

Q ss_pred             eeeEecc--cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHY--KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~--~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|  .....++++++..+.+.++ |.||+|||||||.+.|+...
T Consensus        23 ~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           23 KDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             EEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             EEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3455556  4456788889999998887 99999999999999999754

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.86  E-value=2.2e-06  Score=67.51  Aligned_cols=43  Identities=28%  Similarity=0.370  Sum_probs=33.0

Q ss_pred             EeecccceeeeC----CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          29 FLLKSKNIYLEK----SNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        29 ~~~~~~~~~~~~----~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      ..+++.++....    ..+.|+|++||||||+++.+++.++.+++..
T Consensus        33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~   79 (250)
T 3nwj_A           33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC   79 (250)
T ss_dssp             HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence            344555555553    4677999999999999999999998876654

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.86  E-value=7.8e-06  Score=60.74  Aligned_cols=29  Identities=31%  Similarity=0.440  Sum_probs=22.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      ..++|.|+|||||||+|+.+++.++.+++
T Consensus         6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i   34 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLHERLPGSFV   34 (183)
T ss_dssp             CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence            35779999999999999999999998876

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.86  E-value=8.4e-06  Score=65.52  Aligned_cols=35  Identities=31%  Similarity=0.493  Sum_probs=29.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      .++|.||||+||||+|+.+++.++..++.+++..+
T Consensus        35 livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~   69 (287)
T 1gvn_B           35 AFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF   69 (287)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence            46699999999999999999988656677776544

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.85  E-value=7.5e-06  Score=61.15  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .++|.|+||+||||+++.+++.++
T Consensus         5 ~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            5 VVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            577999999999999999999886

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.85  E-value=1.1e-05  Score=59.55  Aligned_cols=28  Identities=21%  Similarity=0.475  Sum_probs=23.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      .++|.||||+||||+++.++..+|..++
T Consensus        10 ~i~l~G~~GsGKSTl~~~l~~~~g~~~i   37 (175)
T 1knq_A           10 IYVLMGVSGSGKSAVASEVAHQLHAAFL   37 (175)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence            4669999999999999999998876444

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.85  E-value=1.3e-05  Score=63.14  Aligned_cols=45  Identities=33%  Similarity=0.583  Sum_probs=36.5

Q ss_pred             eEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          21 VYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        21 l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +...|. ....+++.++..+.+.++ |.||+|+|||||.+.++..+.
T Consensus        10 l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (253)
T 2nq2_C           10 LGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR   56 (253)
T ss_dssp             EEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred             EEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            444554 455778889999988777 999999999999999998763

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.85  E-value=1.2e-05  Score=60.84  Aligned_cols=33  Identities=24%  Similarity=0.505  Sum_probs=26.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      .+.|.||+||||||+++.++..+|.  +.+++..+
T Consensus        31 ~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~   63 (200)
T 4eun_A           31 HVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF   63 (200)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence            4559999999999999999999865  44444443

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.85  E-value=1.1e-05  Score=62.94  Aligned_cols=45  Identities=18%  Similarity=0.361  Sum_probs=35.4

Q ss_pred             eeEeccc--ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYK--RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~--~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.  ....+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus         8 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A            8 NATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             EEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             EEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3444454  245677888888888777 99999999999999999875

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.85  E-value=5.7e-06  Score=68.96  Aligned_cols=68  Identities=16%  Similarity=0.236  Sum_probs=42.5

Q ss_pred             cceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEc
Q psy5910          34 KNIYLEKS-NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYID  112 (225)
Q Consensus        34 ~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iD  112 (225)
                      .++..+.+ .++|+|||||||||++++++..++..++.+....        ......+.    .      ..+..++++|
T Consensus       162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~--------~~~~~~lg----~------~~q~~~~l~d  223 (377)
T 1svm_A          162 MVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL--------DRLNFELG----V------AIDQFLVVFE  223 (377)
T ss_dssp             HHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT--------TTHHHHHG----G------GTTCSCEEET
T ss_pred             cccccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc--------hhHHHHHH----H------hcchhHHHHH
Confidence            33444544 5569999999999999999998866544322211        11000011    1      1255678999


Q ss_pred             chhhhcc
Q psy5910         113 EIDKISK  119 (225)
Q Consensus       113 Eid~l~~  119 (225)
                      +++.+..
T Consensus       224 d~~~~~~  230 (377)
T 1svm_A          224 DVKGTGG  230 (377)
T ss_dssp             TCCCSTT
T ss_pred             HHHHHHH
Confidence            9998875

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.85  E-value=2.8e-05  Score=60.28  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=27.2

Q ss_pred             eCCc-EEEEcCCCCcHHHHHHHHHHH--h-------CCCeEEeccCc
Q psy5910          39 EKSN-ILLVGPTGCGKTLMVKTLAKI--I-------NVPIIVVDATS   75 (225)
Q Consensus        39 ~~~~-vLl~Gp~GtGKT~la~~ia~~--~-------~~~~~~~~~~~   75 (225)
                      +.+. ++|+||||+|||++++.++..  .       +...++++...
T Consensus        22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            4444 559999999999999999984  3       34566666544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.84  E-value=0.00012  Score=62.03  Aligned_cols=35  Identities=34%  Similarity=0.466  Sum_probs=27.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS   75 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~   75 (225)
                      ..++++|++|+||||++..+|..+   +..+..+++..
T Consensus       101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~  138 (443)
T 3dm5_A          101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDT  138 (443)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCC
T ss_pred             eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            356699999999999999998777   56666666643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.84  E-value=1.1e-05  Score=63.18  Aligned_cols=45  Identities=22%  Similarity=0.404  Sum_probs=35.4

Q ss_pred             eeEecc-cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHY-KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~-~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...| .....+++.++..+.+.++ |.||+|+|||||.+.|+..+
T Consensus         6 ~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A            6 HVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             EEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            344455 3344677788888888777 99999999999999999876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.84  E-value=9.5e-06  Score=61.06  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=25.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .|+|.|+|||||||+|+.+++.++.+++.
T Consensus        14 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~   42 (199)
T 2bwj_A           14 IIFIIGGPGSGKGTQCEKLVEKYGFTHLS   42 (199)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence            57799999999999999999999865544

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=97.83  E-value=1.1e-05  Score=62.65  Aligned_cols=31  Identities=32%  Similarity=0.436  Sum_probs=26.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      ..++|.|+|||||||+|+.|++.++.+++..
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   47 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT   47 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            4688999999999999999999998765543

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.83  E-value=8.3e-06  Score=67.42  Aligned_cols=45  Identities=29%  Similarity=0.503  Sum_probs=36.2

Q ss_pred             eeEecccceE--eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLF--LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~--~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|+...  .+++.++..+.+.++ |.||+|||||||.+.|+...
T Consensus         8 ~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K            8 NVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             eEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3444555444  677888999888777 99999999999999999876

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=97.83  E-value=1.2e-05  Score=63.06  Aligned_cols=39  Identities=10%  Similarity=0.210  Sum_probs=25.2

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      ..+++.++..+.+.++ |.||+|+||||+++.++..+|..
T Consensus        13 ~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           13 LGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             ----------CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             eeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            3456677777777666 99999999999999999987643

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.82  E-value=1.4e-05  Score=63.78  Aligned_cols=45  Identities=27%  Similarity=0.437  Sum_probs=36.5

Q ss_pred             eeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|..   ...+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus        21 ~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           21 DVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             EEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            45555543   45678888999888777 99999999999999999876

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.82  E-value=1.1e-05  Score=62.40  Aligned_cols=31  Identities=13%  Similarity=0.305  Sum_probs=26.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      ..++|.|+|||||||+|+.+++.++.+++..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   38 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS   38 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence            4677999999999999999999988765543

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=97.82  E-value=7.9e-05  Score=61.48  Aligned_cols=74  Identities=23%  Similarity=0.229  Sum_probs=44.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------Ccc--------CCcHHHHHHHHHHhcchhhhhh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------GYV--------GDDVESIIQKLLHECDYDVELA  104 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~~~--------g~~~~~~~~~~~~~~~~~~~~~  104 (225)
                      -++++||||+|||+||..++...   +.++.+++.......      ++.        ..+....+..+    ...+...
T Consensus        63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~----~~l~~~~  138 (349)
T 2zr9_A           63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIA----DMLVRSG  138 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH----HHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHH----HHHHhcC
Confidence            45699999999999999888654   566777766432110      100        01122222111    1112234


Q ss_pred             CCCEEEEcchhhhcc
Q psy5910         105 EQSIIYIDEIDKISK  119 (225)
Q Consensus       105 ~~~vl~iDEid~l~~  119 (225)
                      .+.+|+||++..+.+
T Consensus       139 ~~~lIVIDsl~~l~~  153 (349)
T 2zr9_A          139 ALDIIVIDSVAALVP  153 (349)
T ss_dssp             CCSEEEEECGGGCCC
T ss_pred             CCCEEEEcChHhhcc
Confidence            688999999999874

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.81  E-value=0.00011  Score=56.64  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=23.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~   72 (225)
                      -++++||+|+||||++..++..+   +..++.++
T Consensus        14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~   47 (223)
T 2b8t_A           14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK   47 (223)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence            45589999999999887776655   55666664

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.81  E-value=1.2e-05  Score=60.09  Aligned_cols=30  Identities=13%  Similarity=0.261  Sum_probs=25.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.|+|||||||+|+.+++.++.+++..
T Consensus         8 ~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~   37 (194)
T 1qf9_A            8 VVFVLGGPGSGKGTQCANIVRDFGWVHLSA   37 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence            567999999999999999999988765543

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.81  E-value=1.5e-05  Score=60.90  Aligned_cols=28  Identities=36%  Similarity=0.498  Sum_probs=24.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      .++|.||||+||+|.|+.|++.++.+.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i   29 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI   29 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence            4679999999999999999999987543

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.80  E-value=2.2e-05  Score=62.41  Aligned_cols=37  Identities=24%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+.+.++ |.||+|+|||||.+.|+..+
T Consensus        20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            45678889999888777 99999999999999999876

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=97.80  E-value=1.5e-05  Score=60.97  Aligned_cols=30  Identities=23%  Similarity=0.397  Sum_probs=26.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.|+||+||||+|+.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~   31 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST   31 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence            478999999999999999999998877655

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.79  E-value=1.7e-05  Score=61.55  Aligned_cols=46  Identities=26%  Similarity=0.444  Sum_probs=36.2

Q ss_pred             eeEeccc--ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYK--RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~--~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...|.  ....+++.++..+.+.++ |.||+|+|||||.+.++..+.
T Consensus        11 ~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   59 (229)
T 2pze_A           11 NVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE   59 (229)
T ss_dssp             EEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            3444552  345677888889888777 999999999999999998763

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.79  E-value=9.9e-06  Score=59.89  Aligned_cols=30  Identities=20%  Similarity=0.308  Sum_probs=23.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH-HhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK-IINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~-~~~~~~~~~~~   73 (225)
                      -++|.|+||+||||+|+.+++ .++  +..++.
T Consensus         4 ~I~i~G~~GsGKST~a~~L~~~~~~--~~~i~~   34 (181)
T 1ly1_A            4 IILTIGCPGSGKSTWAREFIAKNPG--FYNINR   34 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHSTT--EEEECH
T ss_pred             EEEEecCCCCCHHHHHHHHHhhcCC--cEEecH
Confidence            467999999999999999998 444  444444

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=97.79  E-value=1.3e-05  Score=61.62  Aligned_cols=30  Identities=23%  Similarity=0.444  Sum_probs=26.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .|+|.|+|||||||+|+.+++.++.+++..
T Consensus         7 ~I~l~G~~GsGKsT~a~~La~~l~~~~i~~   36 (217)
T 3be4_A            7 NLILIGAPGSGKGTQCEFIKKEYGLAHLST   36 (217)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence            578999999999999999999998776654

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.79  E-value=1.5e-05  Score=58.88  Aligned_cols=26  Identities=23%  Similarity=0.571  Sum_probs=21.1

Q ss_pred             cceeeeCCcEE-EEcCCCCcHHHHHHH
Q psy5910          34 KNIYLEKSNIL-LVGPTGCGKTLMVKT   59 (225)
Q Consensus        34 ~~~~~~~~~vL-l~Gp~GtGKT~la~~   59 (225)
                      .++..+.+.++ |+||+||||||+++.
T Consensus         2 vsl~i~~gei~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A            2 MKLTIPELSLVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEEESSEEEEEECCTTSCHHHHHHH
T ss_pred             ccccCCCCEEEEEECCCCCCHHHHHHH
Confidence            34556667666 999999999999994

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.78  E-value=0.0001  Score=60.86  Aligned_cols=78  Identities=17%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             eeCCc-EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------C--------ccCCcHHHHHHHHHHhcch
Q psy5910          38 LEKSN-ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------G--------YVGDDVESIIQKLLHECDY   99 (225)
Q Consensus        38 ~~~~~-vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~--------~~g~~~~~~~~~~~~~~~~   99 (225)
                      .+++. ++|+||||||||+||..++..+   +.++++++.......      +        ....+....+..+    ..
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~----~~  133 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIV----DE  133 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHH----HH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHH----HH
Confidence            34444 4599999999999999998765   566777776542110      0        0111222222221    11


Q ss_pred             hhhhhCCCEEEEcchhhhcc
Q psy5910         100 DVELAEQSIIYIDEIDKISK  119 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~  119 (225)
                      .+....+.++++|.+..+.+
T Consensus       134 l~~~~~~dlvVIDSi~~l~~  153 (356)
T 3hr8_A          134 LVRSGVVDLIVVDSVAALVP  153 (356)
T ss_dssp             HHHTSCCSEEEEECTTTCCC
T ss_pred             HhhhcCCCeEEehHhhhhcC
Confidence            12234678999999998876

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.78  E-value=1.4e-05  Score=60.54  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=25.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .|+|.|+|||||||+|+.+++.++.+++..
T Consensus        17 ~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~   46 (203)
T 1ukz_A           17 VIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   46 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence            466999999999999999999988755543

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.77  E-value=1.4e-05  Score=61.51  Aligned_cols=29  Identities=14%  Similarity=0.284  Sum_probs=25.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      ..++|.|||||||||+++.+++.++.+++
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i   34 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTKYQLAHI   34 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence            46889999999999999999999986443

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.77  E-value=1.4e-05  Score=62.65  Aligned_cols=30  Identities=20%  Similarity=0.225  Sum_probs=25.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.||||+||||+|+.+++.++.+.+..
T Consensus        31 ~I~l~G~~GsGKsT~a~~L~~~~g~~~is~   60 (243)
T 3tlx_A           31 RYIFLGAPGSGKGTQSLNLKKSHCYCHLST   60 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence            577999999999999999999987755543

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.77  E-value=1.8e-05  Score=60.94  Aligned_cols=28  Identities=29%  Similarity=0.574  Sum_probs=24.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      .+.|.|||||||||+++.+++.++.+++
T Consensus         7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~   34 (227)
T 1cke_A            7 VITIDGPSGAGKGTLCKAMAEALQWHLL   34 (227)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence            4669999999999999999999886543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.76  E-value=1.4e-05  Score=64.76  Aligned_cols=47  Identities=26%  Similarity=0.400  Sum_probs=38.2

Q ss_pred             eeeEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+.+.|. ....++++++..+.+.++ |+||+|+|||||++.|+..+.
T Consensus        57 ~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~  105 (306)
T 3nh6_A           57 ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD  105 (306)
T ss_dssp             EEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred             EEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence            44555663 456788899999988777 999999999999999998763

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.76  E-value=2.7e-05  Score=57.78  Aligned_cols=35  Identities=26%  Similarity=0.535  Sum_probs=29.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      .+.|.|++||||||+++.++..+   |.+++.++...+
T Consensus         7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~   44 (179)
T 2pez_A            7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   44 (179)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence            45699999999999999999988   888888776444

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.76  E-value=3.2e-05  Score=64.04  Aligned_cols=37  Identities=16%  Similarity=0.438  Sum_probs=33.4

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+.+.++ |.||+|+|||||.+.|+...
T Consensus        41 ~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             eEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence            45788999999998888 99999999999999999876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.75  E-value=1.7e-05  Score=61.05  Aligned_cols=27  Identities=22%  Similarity=0.367  Sum_probs=23.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPI   68 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~   68 (225)
                      -|+|.||||+||+|.|+.|++.++.+.
T Consensus        31 iI~llGpPGsGKgTqa~~L~~~~g~~h   57 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQKFHFNH   57 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHHHCCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCce
Confidence            355899999999999999999997643

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.75  E-value=1.9e-05  Score=59.55  Aligned_cols=28  Identities=25%  Similarity=0.511  Sum_probs=24.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      .+.|.|++||||||+++.+++.++.+++
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~   29 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIF   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence            3679999999999999999999987654

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.75  E-value=1.8e-05  Score=59.89  Aligned_cols=25  Identities=36%  Similarity=0.759  Sum_probs=21.3

Q ss_pred             CcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.++ |.||+|+||||+++.++..+.
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3444 999999999999999999863

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.74  E-value=3e-05  Score=61.52  Aligned_cols=36  Identities=25%  Similarity=0.626  Sum_probs=31.3

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.++..+ +.++ |.||+|+|||||.+.++...
T Consensus        18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence            456788889898 7666 99999999999999999876

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.73  E-value=3.1e-05  Score=57.90  Aligned_cols=30  Identities=27%  Similarity=0.327  Sum_probs=26.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVD   72 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~   72 (225)
                      +.|.|++||||||+|+.+++.+   +.+++..+
T Consensus         3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d   35 (195)
T 2pbr_A            3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR   35 (195)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            6699999999999999999988   78777654

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.72  E-value=1.8e-05  Score=59.94  Aligned_cols=29  Identities=24%  Similarity=0.525  Sum_probs=24.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .+.|.|++||||||+++.+++ ++.+++..
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~   31 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDA   31 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-TTCEEEEH
T ss_pred             EEEEECCCCcCHHHHHHHHHH-CCCEEEEc
Confidence            467999999999999999999 77665544

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.71  E-value=3.7e-05  Score=60.11  Aligned_cols=34  Identities=26%  Similarity=0.570  Sum_probs=29.6

Q ss_pred             ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +++.++..+. .++ |.||+|+|||||.+.++....
T Consensus        15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~   49 (240)
T 2onk_A           15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK   49 (240)
T ss_dssp             EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence            6777888888 777 999999999999999998763

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=97.70  E-value=2.6e-05  Score=60.13  Aligned_cols=30  Identities=30%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.|+||+||||+|+.+++.++.+++..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~   31 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES   31 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence            367999999999999999999988655443

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.70  E-value=2.6e-05  Score=61.73  Aligned_cols=45  Identities=33%  Similarity=0.461  Sum_probs=35.6

Q ss_pred             eeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|..   ...+++.++..+.+.++ |.||+|+|||||++.|+..+
T Consensus        22 ~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           22 DVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             EEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence            44555543   24677888989888777 99999999999999999876

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.69  E-value=0.00016  Score=69.51  Aligned_cols=48  Identities=27%  Similarity=0.537  Sum_probs=38.2

Q ss_pred             eeeEeccc---ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC
Q psy5910          19 VGVYNHYK---RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        19 ~~l~~~~~---~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      +.+.+.|.   ....++++++..+++..+ ++||+||||||+++.+.+.+..
T Consensus       419 ~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~  470 (1321)
T 4f4c_A          419 ENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDV  470 (1321)
T ss_dssp             EEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCC
T ss_pred             EEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhcccccc
Confidence            45566663   235678899999988777 9999999999999999988743

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.69  E-value=2.9e-05  Score=61.36  Aligned_cols=35  Identities=40%  Similarity=0.596  Sum_probs=28.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH---hCCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI---INVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~---~~~~~~~~~~~~~   76 (225)
                      -|+|.|+||+||||+|+.+++.   .|.+++.++...+
T Consensus         6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~   43 (260)
T 3a4m_A            6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI   43 (260)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence            5679999999999999999998   6777775665544

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.69  E-value=1.6e-05  Score=59.43  Aligned_cols=32  Identities=16%  Similarity=0.378  Sum_probs=25.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC---CCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~   73 (225)
                      .|+|.|+|||||||+|+.+++.++   .++..++.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~   37 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINY   37 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEEC
Confidence            467999999999999999999885   23555543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.68  E-value=3.2e-05  Score=60.12  Aligned_cols=28  Identities=25%  Similarity=0.521  Sum_probs=24.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      .+.|.|||||||||+++.|++.++.+++
T Consensus        11 ~i~i~G~~GsGKsTla~~la~~lg~~~~   38 (233)
T 3r20_A           11 VVAVDGPAGTGKSSVSRGLARALGARYL   38 (233)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence            5669999999999999999999986553

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.68  E-value=4e-05  Score=57.52  Aligned_cols=28  Identities=29%  Similarity=0.497  Sum_probs=23.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPI   68 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~   68 (225)
                      +.|+|+||||+|||||++.+.+.....+
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~   29 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence            4688999999999999999988765444

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.67  E-value=3.5e-05  Score=58.28  Aligned_cols=30  Identities=23%  Similarity=0.511  Sum_probs=26.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .+.|.|++||||||+++.+++.++.+++..
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~   33 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPYLSS   33 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence            466999999999999999999998776653

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=97.67  E-value=2.7e-05  Score=63.43  Aligned_cols=32  Identities=41%  Similarity=0.645  Sum_probs=27.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      .++|.||+|||||++|+.+|+.++..++..+.
T Consensus         7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds   38 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALADALPCELISVDS   38 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence            57799999999999999999999877776654

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.67  E-value=0.00026  Score=59.95  Aligned_cols=34  Identities=35%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      ..+++.||+|+||||++..+|..+   +..+..+++.
T Consensus        98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D  134 (433)
T 3kl4_A           98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD  134 (433)
T ss_dssp             EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence            345599999999999999998777   6666666654

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.67  E-value=3.4e-05  Score=60.34  Aligned_cols=29  Identities=21%  Similarity=0.491  Sum_probs=24.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      ..+.|.||||+||||+++.|++.++....
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~   56 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIAQNFGLQHL   56 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence            35669999999999999999999877543

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.67  E-value=0.00035  Score=52.63  Aligned_cols=32  Identities=25%  Similarity=0.182  Sum_probs=25.8

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEe
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVV   71 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~   71 (225)
                      .+.+++++++|.||||+|-.++-..   |.++..+
T Consensus        28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v   62 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV   62 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            4678899999999999998777555   6776666

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.66  E-value=2.8e-05  Score=58.95  Aligned_cols=28  Identities=29%  Similarity=0.529  Sum_probs=23.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .+.|.||+||||||+++.+++ +|.+++.
T Consensus         4 ~i~l~G~~GsGKST~~~~La~-lg~~~id   31 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD   31 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence            355999999999999999988 7776653

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.65  E-value=0.0012  Score=50.81  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=25.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      ++++.|+||||||+++-.+|..+   |..++.++.
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~   42 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV   42 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence            68899999999999988888766   666555444

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.65  E-value=0.00026  Score=57.32  Aligned_cols=33  Identities=33%  Similarity=0.528  Sum_probs=25.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      -++++||+|+||||++..+|..+   +..+..+++.
T Consensus       106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D  141 (306)
T 1vma_A          106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD  141 (306)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence            35599999999999999999876   4555555543

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=97.62  E-value=3.6e-05  Score=58.12  Aligned_cols=30  Identities=23%  Similarity=0.349  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .+.|+|++||||||+++.+++.+|.+++..
T Consensus        14 iIgltG~~GSGKSTva~~L~~~lg~~vid~   43 (192)
T 2grj_A           14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV   43 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence            455999999999999999999888766543

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.62  E-value=2.9e-05  Score=56.74  Aligned_cols=32  Identities=28%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             ccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          33 SKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        33 ~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..++..+.+.++ |.||+|+|||||++.++..+
T Consensus        25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            344555666555 99999999999999999987

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.61  E-value=0.00018  Score=70.81  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=50.3

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCc---cCCcH----------HHHHHHHHHhcchhh
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGY---VGDDV----------ESIIQKLLHECDYDV  101 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~---~g~~~----------~~~~~~~~~~~~~~~  101 (225)
                      .+...++++||||||||+||.+++...   |.+..+++.....+.-+   .|.+.          ......+...   ..
T Consensus      1079 ~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~---l~ 1155 (2050)
T 3cmu_A         1079 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA---LA 1155 (2050)
T ss_dssp             ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHH---HH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHH---HH
Confidence            344578899999999999999887654   77888888765532111   11100          1011111111   11


Q ss_pred             hhhCCCEEEEcchhhhcccc
Q psy5910         102 ELAEQSIIYIDEIDKISKKT  121 (225)
Q Consensus       102 ~~~~~~vl~iDEid~l~~~~  121 (225)
                      +...+.+|+||++..+.+..
T Consensus      1156 ~~~~~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A         1156 RSGAVDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp             HHTCCSEEEESCGGGCCCHH
T ss_pred             HhCCCCEEEECCcccccccc
Confidence            23568999999999997654

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.61  E-value=4e-05  Score=60.29  Aligned_cols=28  Identities=36%  Similarity=0.604  Sum_probs=24.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      .+.|.||+||||||+++.+++.+|..++
T Consensus        29 ~I~I~G~~GsGKSTl~k~La~~Lg~~~~   56 (252)
T 4e22_A           29 VITVDGPSGAGKGTLCKALAESLNWRLL   56 (252)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence            3559999999999999999999887543

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.61  E-value=0.00012  Score=64.47  Aligned_cols=33  Identities=21%  Similarity=0.397  Sum_probs=25.3

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVD   72 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~   72 (225)
                      .+.+++.||||||||+++.+++..+   +.++....
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A  239 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA  239 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence            3467799999999999999988765   55555443

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.60  E-value=4.2e-05  Score=57.98  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=23.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      .|+|.|+||+||||+|+.+++.++..
T Consensus         6 ~I~i~G~~GsGKsT~~~~L~~~l~~~   31 (213)
T 2plr_A            6 LIAFEGIDGSGKSSQATLLKDWIELK   31 (213)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence            46799999999999999999998763

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.60  E-value=3.8e-05  Score=57.94  Aligned_cols=31  Identities=23%  Similarity=0.251  Sum_probs=25.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh-CCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII-NVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~-~~~~~~~~   72 (225)
                      .|.|.|++||||||+++.+++.+ +.+++.+.
T Consensus         6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~   37 (204)
T 2v54_A            6 LIVFEGLDKSGKTTQCMNIMESIPANTIKYLN   37 (204)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence            56799999999999999999988 46666543

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=97.60  E-value=0.00027  Score=58.47  Aligned_cols=74  Identities=16%  Similarity=0.252  Sum_probs=45.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------Cc--------cCCcHHHHHHHHHHhcchhhhhh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------GY--------VGDDVESIIQKLLHECDYDVELA  104 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~~--------~g~~~~~~~~~~~~~~~~~~~~~  104 (225)
                      -++++|+||+|||++|..++...   +.++++++.....+.      ++        ...+...... ...   ...+..
T Consensus        65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~-~~~---~l~~~~  140 (356)
T 1u94_A           65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALE-ICD---ALARSG  140 (356)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH-HHH---HHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHH-HHH---HHHhcc
Confidence            46699999999999999888654   567888877432110      00        0011121111 111   112234


Q ss_pred             CCCEEEEcchhhhcc
Q psy5910         105 EQSIIYIDEIDKISK  119 (225)
Q Consensus       105 ~~~vl~iDEid~l~~  119 (225)
                      ...+|+||.+..+..
T Consensus       141 ~~~lVVIDsl~~l~~  155 (356)
T 1u94_A          141 AVDVIVVDSVAALTP  155 (356)
T ss_dssp             CCSEEEEECGGGCCC
T ss_pred             CCCEEEEcCHHHhcc
Confidence            678999999999875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.60  E-value=3.7e-05  Score=57.94  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=23.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .|.|.|++||||||+++.+++. |.+++.
T Consensus        10 ~I~i~G~~GsGKST~~~~La~~-g~~~id   37 (203)
T 1uf9_A           10 IIGITGNIGSGKSTVAALLRSW-GYPVLD   37 (203)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence            4669999999999999999998 766554

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.59  E-value=4e-05  Score=57.03  Aligned_cols=24  Identities=25%  Similarity=0.466  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -+.|+||||+|||||++.++....
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            456999999999999999998764

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=97.59  E-value=2.3e-05  Score=63.37  Aligned_cols=31  Identities=29%  Similarity=0.462  Sum_probs=24.7

Q ss_pred             cceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          34 KNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        34 ~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .++..+.+.++ |+||+|+||||+++.++..+
T Consensus        93 l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l  124 (302)
T 3b9q_A           93 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  124 (302)
T ss_dssp             CCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            44444555555 99999999999999999876

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=97.59  E-value=0.00022  Score=59.93  Aligned_cols=38  Identities=24%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             eeCCc-EEEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCc
Q psy5910          38 LEKSN-ILLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATS   75 (225)
Q Consensus        38 ~~~~~-vLl~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~   75 (225)
                      .+.+. ++|+||||||||+|++.++-..         +...++++...
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            34444 4499999999999999776433         23366676654

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.57  E-value=4.5e-05  Score=57.89  Aligned_cols=25  Identities=24%  Similarity=0.573  Sum_probs=22.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ..++|.||||+||||+++.+++.++
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhCc
Confidence            3567999999999999999999874

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.57  E-value=8.4e-05  Score=61.49  Aligned_cols=24  Identities=29%  Similarity=0.630  Sum_probs=21.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+++.||+|+||||+.++++..+
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~  147 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYL  147 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcc
Confidence            346699999999999999998876

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.57  E-value=4.6e-05  Score=57.97  Aligned_cols=28  Identities=29%  Similarity=0.529  Sum_probs=22.6

Q ss_pred             eeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          38 LEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+.+.++ |.||+|||||||++.|+..+.
T Consensus        17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4445555 999999999999999999874

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.57  E-value=0.00015  Score=59.17  Aligned_cols=34  Identities=21%  Similarity=0.313  Sum_probs=26.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATS   75 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~   75 (225)
                      -++++||||+|||++|..++...         +.+.++++...
T Consensus       109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            45599999999999999998764         44567776654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.56  E-value=2.9e-05  Score=60.13  Aligned_cols=32  Identities=34%  Similarity=0.537  Sum_probs=18.4

Q ss_pred             ccceeeeCCcEE-EEcCCCCcHHHHHHHHH-HHh
Q psy5910          33 SKNIYLEKSNIL-LVGPTGCGKTLMVKTLA-KII   64 (225)
Q Consensus        33 ~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia-~~~   64 (225)
                      +.++..+.+.++ |.||+||||||+++.++ ..+
T Consensus        19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             ---CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            445556666666 99999999999999999 775

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=97.56  E-value=0.00035  Score=54.32  Aligned_cols=34  Identities=29%  Similarity=0.396  Sum_probs=27.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT   74 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~   74 (225)
                      ..+++.||+|+|||.++..++...+.+.+.+.+.
T Consensus       109 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~  142 (237)
T 2fz4_A          109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT  142 (237)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred             CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence            4588999999999999998888877776666553

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.55  E-value=2.6e-05  Score=59.26  Aligned_cols=27  Identities=22%  Similarity=0.265  Sum_probs=23.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      ..|+|.|+|||||||+++.+++.++.+
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~~l~~~   37 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVEYLKNN   37 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            356699999999999999999987543

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=97.54  E-value=1.3e-05  Score=65.88  Aligned_cols=29  Identities=34%  Similarity=0.591  Sum_probs=25.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      +++|+||||+||||+++.+++.++.+|+.
T Consensus        26 ~i~l~G~~G~GKTTl~~~la~~l~~~f~~   54 (359)
T 2ga8_A           26 CVILVGSPGSGKSTIAEELCQIINEKYHT   54 (359)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence            58899999999999999999999877644

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=97.54  E-value=0.00032  Score=58.19  Aligned_cols=74  Identities=16%  Similarity=0.262  Sum_probs=45.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------Cc--------cCCcHHHHHHHHHHhcchhhhhh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------GY--------VGDDVESIIQKLLHECDYDVELA  104 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~~--------~g~~~~~~~~~~~~~~~~~~~~~  104 (225)
                      -++++||||+|||++|..++...   +.++++++.......      ++        ...+....+..+    ...++..
T Consensus        76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l----~~l~~~~  151 (366)
T 1xp8_A           76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIM----ELLVRSG  151 (366)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH----HHHHTTT
T ss_pred             EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHH----HHHHhcC
Confidence            45699999999999998887654   567787776542110      00        011222222211    1112234


Q ss_pred             CCCEEEEcchhhhcc
Q psy5910         105 EQSIIYIDEIDKISK  119 (225)
Q Consensus       105 ~~~vl~iDEid~l~~  119 (225)
                      ...+|+||.+..+.+
T Consensus       152 ~~~lVVIDsl~~l~~  166 (366)
T 1xp8_A          152 AIDVVVVDSVAALTP  166 (366)
T ss_dssp             CCSEEEEECTTTCCC
T ss_pred             CCCEEEEeChHHhcc
Confidence            678999999999975

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.54  E-value=2.6e-05  Score=63.11  Aligned_cols=35  Identities=29%  Similarity=0.474  Sum_probs=29.7

Q ss_pred             eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .++++++..+++.++ |+||+|+|||||++.|+..+
T Consensus       115 vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          115 ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            456667777777666 99999999999999999987

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.53  E-value=5.1e-05  Score=57.80  Aligned_cols=24  Identities=29%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -+.|.||+|+|||||++.|+..+.
T Consensus        24 ~v~I~G~sGsGKSTl~~~l~~~~~   47 (208)
T 3c8u_A           24 LVALSGAPGSGKSTLSNPLAAALS   47 (208)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            344999999999999999999875

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.53  E-value=5.3e-05  Score=59.55  Aligned_cols=36  Identities=31%  Similarity=0.500  Sum_probs=30.4

Q ss_pred             eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+++.++..+.+.++ |.||+|+|||||.+.++..+.
T Consensus        15 vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence            456678888888776 999999999999999998763

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=97.51  E-value=0.00034  Score=57.31  Aligned_cols=121  Identities=10%  Similarity=0.035  Sum_probs=69.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CC-CeEEeccCcccccCccC-CcHHHHHHHHHHhcchhhhhhCCCEEEEcchh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NV-PIIVVDATSFTEAGYVG-DDVESIIQKLLHECDYDVELAEQSIIYIDEID  115 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~-~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid  115 (225)
                      +.+||+||+|.||++.++.+++.+   +. ++..+.        +.+ .++......+...    .-....-|++|||++
T Consensus        19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~----plf~~~kvvii~~~~   86 (343)
T 1jr3_D           19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS--------IDPNTDWNAIFSLCQAM----SLFASRQTLLLLLPE   86 (343)
T ss_dssp             SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE--------CCTTCCHHHHHHHHHHH----HHCCSCEEEEEECCS
T ss_pred             cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE--------ecCCCCHHHHHHHhcCc----CCccCCeEEEEECCC
Confidence            367799999999999999998865   21 211111        111 2333333222111    112356799999999


Q ss_pred             h-hcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910         116 K-ISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE  194 (225)
Q Consensus       116 ~-l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~  194 (225)
                      . +...             .+++|++.+++..             .+ .++++.+++.-- . .....+.+++.+|. ..
T Consensus        87 ~kl~~~-------------~~~aLl~~le~p~-------------~~-~~~il~~~~~~~-~-~~~~k~~~~i~sr~-~~  136 (343)
T 1jr3_D           87 NGPNAA-------------INEQLLTLTGLLH-------------DD-LLLIVRGNKLSK-A-QENAAWFTALANRS-VQ  136 (343)
T ss_dssp             SCCCTT-------------HHHHHHHHHTTCB-------------TT-EEEEEEESCCCT-T-TTTSHHHHHHTTTC-EE
T ss_pred             CCCChH-------------HHHHHHHHHhcCC-------------CC-eEEEEEcCCCCh-h-hHhhHHHHHHHhCc-eE
Confidence            8 7655             7899999998521             11 144445543200 0 00135788888875 23


Q ss_pred             ccccccccc
Q psy5910         195 TNFLEKLNN  203 (225)
Q Consensus       195 i~~~~~~~~  203 (225)
                      +.|..++.+
T Consensus       137 ~~~~~l~~~  145 (343)
T 1jr3_D          137 VTCQTPEQA  145 (343)
T ss_dssp             EEECCCCTT
T ss_pred             EEeeCCCHH
Confidence            566555544

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.51  E-value=7e-05  Score=55.93  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=24.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS   75 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~   75 (225)
                      -+.|.||+|+||||+++.++...+. .+.++...
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~~~~g-~~~i~~d~   36 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAAQLDN-SAYIEGDI   36 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSS-EEEEEHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhcccCC-eEEEcccc
Confidence            3569999999999999999986543 24454433

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.51  E-value=5.2e-05  Score=57.27  Aligned_cols=23  Identities=35%  Similarity=0.485  Sum_probs=20.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -+.|.||||+||||+++.++..+
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhh
Confidence            45599999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.50  E-value=5.8e-05  Score=57.39  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.|.||+|+||||+++.++..++
T Consensus         9 i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            9 IGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44999999999999999999876

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.49  E-value=6.9e-05  Score=55.85  Aligned_cols=35  Identities=29%  Similarity=0.429  Sum_probs=27.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      .++|.|+||+||||+++.++..+   +.++..++...+
T Consensus        15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~   52 (186)
T 2yvu_A           15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA   52 (186)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence            46699999999999999999887   344555655433

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.49  E-value=5.8e-05  Score=57.51  Aligned_cols=25  Identities=32%  Similarity=0.456  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      -+.|.||+|+||||+++.++..++.
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             EEEEECcCCCCHHHHHHHHHhhCCC
Confidence            3559999999999999999988743

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.49  E-value=8.6e-05  Score=58.28  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=23.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      .|.|.|++||||||+|+.+++.++.+
T Consensus        24 iI~I~G~~GSGKST~a~~L~~~lg~~   49 (252)
T 1uj2_A           24 LIGVSGGTASGKSSVCAKIVQLLGQN   49 (252)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhh
Confidence            35599999999999999999998865

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.48  E-value=9.9e-05  Score=55.88  Aligned_cols=31  Identities=19%  Similarity=0.386  Sum_probs=24.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      +.+.|++|+||||+++.++..+   +.++...+.
T Consensus        25 i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~   58 (201)
T 1rz3_A           25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM   58 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence            4499999999999999999876   555555433

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=97.48  E-value=4.7e-05  Score=62.26  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=26.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      .++|.||+|+|||+|+..||+.++.+++..+.
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds   73 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAAHFPLEVINSDK   73 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence            46699999999999999999998876655444

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.48  E-value=7.2e-05  Score=56.60  Aligned_cols=25  Identities=32%  Similarity=0.623  Sum_probs=21.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ..+.|+||+|+|||||++.++..+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCc
Confidence            4567999999999999999998764

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.47  E-value=3.6e-05  Score=58.56  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ..|+|.|+|||||||+++.+++.++
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3567999999999999999999874

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.47  E-value=0.00026  Score=58.27  Aligned_cols=38  Identities=29%  Similarity=0.336  Sum_probs=27.9

Q ss_pred             eeCCcE-EEEcCCCCcHHHHHHHHHHHh---------CCCeEEeccCc
Q psy5910          38 LEKSNI-LLVGPTGCGKTLMVKTLAKII---------NVPIIVVDATS   75 (225)
Q Consensus        38 ~~~~~v-Ll~Gp~GtGKT~la~~ia~~~---------~~~~~~~~~~~   75 (225)
                      .+.+.+ +++||||+|||++|..++...         +...++++...
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            334444 599999999999999998763         44566776654

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.45  E-value=5.5e-05  Score=57.43  Aligned_cols=28  Identities=39%  Similarity=0.512  Sum_probs=22.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh-CCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII-NVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~-~~~~~   69 (225)
                      -+.+.|+||+||||+++.+++.+ +..++
T Consensus        23 ~i~i~G~~GsGKSTl~~~L~~~~~~~~~i   51 (207)
T 2qt1_A           23 IIGISGVTNSGKTTLAKNLQKHLPNCSVI   51 (207)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence            34599999999999999999876 44433

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.45  E-value=8.1e-05  Score=56.94  Aligned_cols=29  Identities=24%  Similarity=0.482  Sum_probs=24.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .|.|.|++||||||+++.+++ +|.+++..
T Consensus         6 ~I~i~G~~GSGKST~~~~L~~-lg~~~id~   34 (218)
T 1vht_A            6 IVALTGGIGSGKSTVANAFAD-LGINVIDA   34 (218)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence            466999999999999999998 77665543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.45  E-value=0.00012  Score=70.33  Aligned_cols=58  Identities=31%  Similarity=0.547  Sum_probs=42.2

Q ss_pred             eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcc
Q psy5910          19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINV--PIIVVDATSF   76 (225)
Q Consensus        19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~   76 (225)
                      +.+.+.|..   .+.++++++..+++..+ ++||+|+||||+++.+.+.+..  --+.+++.++
T Consensus      1080 ~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di 1143 (1321)
T 4f4c_A         1080 KNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEI 1143 (1321)
T ss_dssp             EEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEET
T ss_pred             EEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEh
Confidence            455666632   24678899999988777 9999999999999999987732  2455555433

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.45  E-value=9.5e-05  Score=57.40  Aligned_cols=30  Identities=27%  Similarity=0.408  Sum_probs=25.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      ..+.|.|++||||||+++.+++.+|.+++.
T Consensus        17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d   46 (236)
T 1q3t_A           17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD   46 (236)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence            356699999999999999999998875543

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.45  E-value=8.8e-05  Score=56.69  Aligned_cols=29  Identities=31%  Similarity=0.494  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .+.|.|++||||||+++.+++.++.+++.
T Consensus         5 ~i~i~G~~gsGkst~~~~l~~~~g~~~~~   33 (219)
T 2h92_A            5 NIALDGPAAAGKSTIAKRVASELSMIYVD   33 (219)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCceec
Confidence            57799999999999999999998876544

>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*

Probab=97.44  E-value=0.00038  Score=60.74  Aligned_cols=36  Identities=28%  Similarity=0.521  Sum_probs=27.6

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccCc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDATS   75 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~~   75 (225)
                      .+|+|+.|.+|+|||++++.+...+       ...++.+++..
T Consensus       214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg  256 (574)
T 2iut_A          214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM  256 (574)
T ss_dssp             SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred             CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence            3699999999999999999876544       13477777753

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.44  E-value=0.00027  Score=57.83  Aligned_cols=68  Identities=24%  Similarity=0.362  Sum_probs=40.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEeccCcccc-------cCcc---CCcHHHHHHHHHHhcchhhhhhCCCE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDATSFTE-------AGYV---GDDVESIIQKLLHECDYDVELAEQSI  108 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~~~~~~-------~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~v  108 (225)
                      ..+++.||+|+||||++++++..+..  ..+.++......       .++.   |.....    .+..+    -...|.+
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~----~la~a----L~~~p~i  243 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSAD----CLKSC----LRMRPDR  243 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHH----HHHHH----TTSCCSE
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHH----HHHHH----hhhCCCE
Confidence            35669999999999999999988742  344444322100       0122   222221    22221    1347899


Q ss_pred             EEEcchhh
Q psy5910         109 IYIDEIDK  116 (225)
Q Consensus       109 l~iDEid~  116 (225)
                      +++||+..
T Consensus       244 lildE~~~  251 (330)
T 2pt7_A          244 IILGELRS  251 (330)
T ss_dssp             EEECCCCS
T ss_pred             EEEcCCCh
Confidence            99999765

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.43  E-value=0.0001  Score=54.63  Aligned_cols=33  Identities=21%  Similarity=0.320  Sum_probs=25.7

Q ss_pred             ccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          33 SKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        33 ~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +..+...++-.+|+||+|+|||+++++|+-.++
T Consensus        19 ~~~~~~~~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           19 KVVIPFSKGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             CEEEECCSSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             cEEEecCCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            334445555555999999999999999998775

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=97.43  E-value=0.00012  Score=55.66  Aligned_cols=29  Identities=31%  Similarity=0.426  Sum_probs=26.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      -|.|.|++|||||++++.+|+.+|.+++-
T Consensus         8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D   36 (201)
T 3fdi_A            8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS   36 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence            45599999999999999999999998873

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=97.43  E-value=5.2e-05  Score=62.73  Aligned_cols=31  Identities=29%  Similarity=0.462  Sum_probs=24.6

Q ss_pred             cceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          34 KNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        34 ~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +++..+.+.++ |+||+|+||||+++.++..+
T Consensus       150 l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l  181 (359)
T 2og2_A          150 LQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL  181 (359)
T ss_dssp             CCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence            44444555555 99999999999999999876

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=97.42  E-value=0.00011  Score=59.44  Aligned_cols=32  Identities=47%  Similarity=0.737  Sum_probs=26.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      -+++.||+|+|||+||..+|+.++..++..+.
T Consensus        12 ~i~i~GptgsGKt~la~~La~~~~~~iis~Ds   43 (316)
T 3foz_A           12 AIFLMGPTASGKTALAIELRKILPVELISVDS   43 (316)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred             EEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence            45699999999999999999998766655443

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.42  E-value=9.2e-05  Score=57.03  Aligned_cols=28  Identities=21%  Similarity=0.540  Sum_probs=22.1

Q ss_pred             eeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          38 LEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+.+.++ |.||+|+|||||++.++....
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            3444455 999999999999999998875

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.40  E-value=0.00012  Score=56.19  Aligned_cols=27  Identities=37%  Similarity=0.600  Sum_probs=21.9

Q ss_pred             eeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          38 LEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+.++ |+||+|||||||++.++...
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3444555 99999999999999999854

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.39  E-value=0.0001  Score=60.45  Aligned_cols=31  Identities=45%  Similarity=0.539  Sum_probs=25.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .++|.||+|+|||++|+.|++.++..++..+
T Consensus         9 lI~I~GptgSGKTtla~~La~~l~~~iis~D   39 (340)
T 3d3q_A            9 LIVIVGPTASGKTELSIEVAKKFNGEIISGD   39 (340)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred             eEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence            4669999999999999999999885544433

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.37  E-value=8.9e-05  Score=56.02  Aligned_cols=29  Identities=21%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             eeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          37 YLEKSNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        37 ~~~~~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ......++|.||||+|||++|..+++..+
T Consensus        31 ~~~g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           31 DIYGLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             EETTEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             EECCEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            34456788999999999999999998765

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=97.37  E-value=0.0021  Score=49.66  Aligned_cols=33  Identities=30%  Similarity=0.412  Sum_probs=24.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH----hCCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI----INVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~----~~~~~~~~~~~   74 (225)
                      -+++.|+||+|||++|..++..    .+.++++++..
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            4559999999999999876532    26677776553

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.36  E-value=9.9e-05  Score=59.31  Aligned_cols=36  Identities=31%  Similarity=0.516  Sum_probs=31.2

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.++..+.+.++ |.||+|+|||||.+.|+..+
T Consensus        52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            4567788888888777 99999999999999999876

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.36  E-value=0.00016  Score=54.62  Aligned_cols=25  Identities=20%  Similarity=0.477  Sum_probs=21.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ..+.|.||+|+|||||++.|++...
T Consensus        20 ~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           20 KTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CEEEEECcCCCCHHHHHHHHHhhCC
Confidence            3456999999999999999998765

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.36  E-value=9.6e-05  Score=59.80  Aligned_cols=30  Identities=40%  Similarity=0.461  Sum_probs=24.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      -+++.||+|+|||+||..+|+.++..++..
T Consensus         5 ~i~i~GptgsGKt~la~~La~~~~~~iis~   34 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAKRLNGEVISG   34 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHTTTEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHhCccceeec
Confidence            456999999999999999999887654443

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.35  E-value=0.00015  Score=55.17  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=28.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~   76 (225)
                      .++|.|++|+||||+++.+++.++    .+++.++...+
T Consensus        27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~   65 (211)
T 1m7g_A           27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI   65 (211)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence            456999999999999999998764    55777775444

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.29  E-value=0.00018  Score=63.42  Aligned_cols=45  Identities=20%  Similarity=0.348  Sum_probs=36.4

Q ss_pred             eeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|..  ...+++.++..+++.++ ++||+|+|||||++.++..+
T Consensus       346 ~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          346 DVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             EEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            44555542  45678889999988777 99999999999999999876

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=97.28  E-value=0.00014  Score=58.49  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=24.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS   75 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~   75 (225)
                      -++|.|+||+||||+|+.+++.+ ..+..++...
T Consensus         4 ~I~l~G~~GsGKST~a~~L~~~~-~~~~~i~~D~   36 (301)
T 1ltq_A            4 IILTIGCPGSGKSTWAREFIAKN-PGFYNINRDD   36 (301)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHS-TTEEEECHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC-CCcEEecccH
Confidence            46799999999999999999864 1234444433

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=97.27  E-value=0.00015  Score=58.04  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .|.|.|++||||||+|+.++ .+|.+++.
T Consensus        77 iI~I~G~~GSGKSTva~~La-~lg~~~id  104 (281)
T 2f6r_A           77 VLGLTGISGSGKSSVAQRLK-NLGAYIID  104 (281)
T ss_dssp             EEEEEECTTSCHHHHHHHHH-HHTCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHH-HCCCcEEe
Confidence            35699999999999999999 46765544

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.27  E-value=0.0011  Score=56.44  Aligned_cols=37  Identities=19%  Similarity=0.393  Sum_probs=27.3

Q ss_pred             eeCCc-EEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccC
Q psy5910          38 LEKSN-ILLVGPTGCGKTLMVKTLAKII----NVPIIVVDAT   74 (225)
Q Consensus        38 ~~~~~-vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~   74 (225)
                      .+++. +++.|+||+|||+++..++...    +.++.+++..
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            34444 5599999999999999887654    5577777654

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.25  E-value=0.00027  Score=58.26  Aligned_cols=40  Identities=30%  Similarity=0.431  Sum_probs=29.5

Q ss_pred             eeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC---------CCeEEeccCc
Q psy5910          36 IYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN---------VPIIVVDATS   75 (225)
Q Consensus        36 ~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~---------~~~~~~~~~~   75 (225)
                      ...+.+.+. |+||||+|||+|++.++....         ..+++++...
T Consensus       126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~  175 (349)
T 1pzn_A          126 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN  175 (349)
T ss_dssp             SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred             CCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence            345555555 999999999999999998762         3446666643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.23  E-value=0.00022  Score=66.01  Aligned_cols=47  Identities=23%  Similarity=0.562  Sum_probs=38.9

Q ss_pred             hheeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHH
Q psy5910          16 IVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        16 ~l~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~   62 (225)
                      .+...+...|+....+++.++....+.++ |+||+|+|||||.+.|+.
T Consensus       436 L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          436 LCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            34445666777777888999999998777 999999999999999984

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=97.23  E-value=0.00022  Score=62.23  Aligned_cols=49  Identities=27%  Similarity=0.437  Sum_probs=34.6

Q ss_pred             hhheeeeEecccce-EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          15 KIVSVGVYNHYKRL-FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        15 ~~l~~~l~~~~~~~-~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|.+.+...|... ....+.+ ....+.++ |+||+|+|||||++.|+..+
T Consensus        21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~   71 (538)
T 1yqt_A           21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQL   71 (538)
T ss_dssp             ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            45556666666543 3566666 56666666 99999999999999999765

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=97.22  E-value=0.00019  Score=58.26  Aligned_cols=27  Identities=19%  Similarity=0.399  Sum_probs=22.4

Q ss_pred             eCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          39 EKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        39 ~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+.++ |.||+|+|||||++.|+..+.
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            334455 999999999999999999873

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.22  E-value=0.00018  Score=60.18  Aligned_cols=30  Identities=33%  Similarity=0.472  Sum_probs=25.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      -+++.||+|+|||+||..+++.++..++..
T Consensus         4 ~i~i~GptgsGKttla~~La~~~~~~iis~   33 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINS   33 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred             EEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence            456999999999999999999987655443

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.21  E-value=0.00011  Score=62.20  Aligned_cols=33  Identities=18%  Similarity=0.330  Sum_probs=26.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      -|++.|+||+||||+|+.+++.++.  ..++...+
T Consensus       260 lIil~G~pGSGKSTla~~L~~~~~~--~~i~~D~~  292 (416)
T 3zvl_A          260 VVVAVGFPGAGKSTFIQEHLVSAGY--VHVNRDTL  292 (416)
T ss_dssp             EEEEESCTTSSHHHHHHHHTGGGTC--EECCGGGS
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCc--EEEccchH
Confidence            4559999999999999999998764  45555444

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.21  E-value=0.0015  Score=49.06  Aligned_cols=32  Identities=16%  Similarity=0.392  Sum_probs=25.2

Q ss_pred             EEEEcCCCCcHH-HHHHHHHHHh--CCCeEEeccC
Q psy5910          43 ILLVGPTGCGKT-LMVKTLAKII--NVPIIVVDAT   74 (225)
Q Consensus        43 vLl~Gp~GtGKT-~la~~ia~~~--~~~~~~~~~~   74 (225)
                      .+++||.|+||| .|.+++.+..  +..++.+++.
T Consensus        23 ~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~   57 (195)
T 1w4r_A           23 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA   57 (195)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence            349999999999 7888888765  6677777654

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.21  E-value=0.00019  Score=63.23  Aligned_cols=46  Identities=22%  Similarity=0.415  Sum_probs=36.7

Q ss_pred             eeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...|..  ...+++.++..+++.++ ++||+|+|||||++.++..+.
T Consensus       346 ~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~  394 (582)
T 3b60_A          346 NVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD  394 (582)
T ss_dssp             EEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence            44555542  45678888999888777 999999999999999998773

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.19  E-value=0.00051  Score=53.13  Aligned_cols=33  Identities=30%  Similarity=0.331  Sum_probs=24.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      -++++||||+|||++|..++...   +.+.++++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            45699999999999988776543   5566666553

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.18  E-value=0.00012  Score=58.87  Aligned_cols=43  Identities=14%  Similarity=0.210  Sum_probs=30.6

Q ss_pred             ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh----CCCeEEecc
Q psy5910          31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII----NVPIIVVDA   73 (225)
Q Consensus        31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~----~~~~~~~~~   73 (225)
                      +++.....+.+.++ |.||||+|||||++.++..+    |.++..++.
T Consensus        25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~   72 (296)
T 1cr0_A           25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (296)
T ss_dssp             HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            44444556666555 99999999999999998766    335655544

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=97.18  E-value=0.00027  Score=54.66  Aligned_cols=30  Identities=23%  Similarity=0.507  Sum_probs=25.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .+-|.||||+||||+|+.|++.++.+.+..
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~   39 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQIST   39 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence            344899999999999999999998876543

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.17  E-value=0.00018  Score=61.17  Aligned_cols=39  Identities=13%  Similarity=0.339  Sum_probs=30.8

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      .+.+++. +...++..+ |.||+|||||||++.|++.....
T Consensus       145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~  184 (438)
T 2dpy_A          145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD  184 (438)
T ss_dssp             CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            3455666 667776665 99999999999999999988544

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.17  E-value=0.00025  Score=53.25  Aligned_cols=23  Identities=30%  Similarity=0.808  Sum_probs=20.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.|+||+|+||||+++.++..+
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~   25 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhhc
Confidence            46699999999999999999876

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=97.17  E-value=0.00025  Score=60.86  Aligned_cols=32  Identities=28%  Similarity=0.427  Sum_probs=25.8

Q ss_pred             ccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          33 SKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        33 ~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ++++....+.++ |+||+|+||||+++.|+..+
T Consensus       285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll  317 (503)
T 2yhs_A          285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQF  317 (503)
T ss_dssp             CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceeeccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence            455555556555 99999999999999999876

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.16  E-value=0.00012  Score=55.70  Aligned_cols=23  Identities=30%  Similarity=0.521  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.|.|++|+||||+++.+++.++
T Consensus         3 I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            3 IAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHH
Confidence            56999999999999999999884

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.16  E-value=0.00023  Score=56.29  Aligned_cols=23  Identities=39%  Similarity=0.719  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .++++||+|+||||++++++..+
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~~   49 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDYI   49 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHhC
Confidence            45599999999999999999876

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.15  E-value=0.00021  Score=58.94  Aligned_cols=39  Identities=8%  Similarity=0.163  Sum_probs=30.5

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      .+.+++. +...++.++ |.||+|+|||||.+.|++.....
T Consensus        59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~   98 (347)
T 2obl_A           59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD   98 (347)
T ss_dssp             CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred             CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence            3445555 666776665 99999999999999999998654

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=97.11  E-value=0.00042  Score=61.29  Aligned_cols=35  Identities=26%  Similarity=0.535  Sum_probs=30.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      .|+|.|.||+||||+|+.+++.+   +.+++.++...+
T Consensus        54 lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i   91 (630)
T 1x6v_B           54 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI   91 (630)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence            46799999999999999999999   889988876544

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.11  E-value=0.00033  Score=54.01  Aligned_cols=29  Identities=21%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      -|.+.|++|||||++++.+|+.++.+++.
T Consensus        16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d   44 (223)
T 3hdt_A           16 IITIEREYGSGGRIVGKKLAEELGIHFYD   44 (223)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence            34599999999999999999999987744

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.11  E-value=0.00031  Score=54.35  Aligned_cols=24  Identities=29%  Similarity=0.491  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -+.|.||||+||||+++.+++.++
T Consensus        28 ~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           28 FITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHh
Confidence            355999999999999999999986

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.11  E-value=0.00066  Score=54.69  Aligned_cols=33  Identities=36%  Similarity=0.437  Sum_probs=26.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      .+++.|++|+||||++..+|..+   +..+..+++.
T Consensus       100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D  135 (297)
T 1j8m_F          100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD  135 (297)
T ss_dssp             EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            45589999999999999998776   5666666654

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.10  E-value=0.00018  Score=63.43  Aligned_cols=47  Identities=21%  Similarity=0.403  Sum_probs=37.1

Q ss_pred             eeeEeccc--ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYK--RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~--~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|.  ....+++.++..+++.++ ++||+|+||||+++.++..+.
T Consensus       345 ~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~  394 (587)
T 3qf4_A          345 ENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID  394 (587)
T ss_dssp             EEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred             EEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence            34455552  345678888999988777 999999999999999998774

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=97.08  E-value=0.00042  Score=61.81  Aligned_cols=30  Identities=23%  Similarity=0.528  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHH-HHHHHHHh--CCCeEEe
Q psy5910          42 NILLVGPTGCGKTLM-VKTLAKII--NVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~l-a~~ia~~~--~~~~~~~   71 (225)
                      -.|+.||||||||++ +..|+..+  +.++...
T Consensus       207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~  239 (646)
T 4b3f_X          207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC  239 (646)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            467999999999965 44444443  4444443

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=97.07  E-value=0.0013  Score=56.73  Aligned_cols=35  Identities=26%  Similarity=0.531  Sum_probs=26.1

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh-------CCCeEEeccC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII-------NVPIIVVDAT   74 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~-------~~~~~~~~~~   74 (225)
                      .+|+|+.|++|+|||++++.+...+       ...++.+++.
T Consensus       167 ~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK  208 (512)
T 2ius_A          167 MPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK  208 (512)
T ss_dssp             SCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence            3699999999999999999886532       1236666654

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=97.06  E-value=0.00062  Score=57.73  Aligned_cols=35  Identities=37%  Similarity=0.516  Sum_probs=28.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS   75 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~   75 (225)
                      ..++++|++|+||||++..+|..+   |..+..+++..
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~  137 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT  137 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence            467799999999999999998876   46677776653

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=97.05  E-value=0.0012  Score=56.10  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=25.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII----NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~   74 (225)
                      -+++.|+||+|||++|..++...    +.++.+++..
T Consensus       202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            35599999999999998887643    5577777654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=97.04  E-value=0.00039  Score=56.24  Aligned_cols=25  Identities=20%  Similarity=0.511  Sum_probs=21.7

Q ss_pred             CcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.++ |.||+|+||||+++.|+..++
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3455 999999999999999999875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=97.04  E-value=0.0004  Score=56.16  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -+.++||+||||||+++.++..+
T Consensus       104 vi~lvG~nGsGKTTll~~Lagll  126 (304)
T 1rj9_A          104 VVLVVGVNGVGKTTTIAKLGRYY  126 (304)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHH
Confidence            45599999999999999999877

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.04  E-value=0.00041  Score=55.69  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+.||+||||||+++.|+..++
T Consensus        34 i~I~G~sGsGKSTla~~L~~~l~   56 (290)
T 1odf_A           34 IFFSGPQGSGKSFTSIQIYNHLM   56 (290)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            44999999999999999998875

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=97.03  E-value=0.00049  Score=59.04  Aligned_cols=35  Identities=14%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             eecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+++.++..+. .++ |.||+|||||||.++|+..+.
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~   54 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI   54 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence            34566677777 666 999999999999999998873

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.03  E-value=0.0002  Score=63.11  Aligned_cols=47  Identities=26%  Similarity=0.449  Sum_probs=37.0

Q ss_pred             eeeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|..  ...+++.++..+++.++ ++||+|+||||+++.++..+.
T Consensus       343 ~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~  392 (578)
T 4a82_A          343 DHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD  392 (578)
T ss_dssp             EEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence            344555542  34678889999988777 999999999999999998763

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.03  E-value=0.00023  Score=57.19  Aligned_cols=34  Identities=24%  Similarity=0.552  Sum_probs=23.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC---CCeEEeccCcc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIIN---VPIIVVDATSF   76 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~---~~~~~~~~~~~   76 (225)
                      |.|.||+|+||||+|+.+++.++   ..+..++..++
T Consensus         8 IgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~   44 (290)
T 1a7j_A            8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   44 (290)
T ss_dssp             EEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence            44999999999999999999775   44555665554

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.02  E-value=0.00051  Score=50.64  Aligned_cols=28  Identities=21%  Similarity=0.423  Sum_probs=23.7

Q ss_pred             eeeeCCcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          36 IYLEKSNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      +.....++||.|+||+||||+|..+.+.
T Consensus        12 v~v~G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           12 LVIDKMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3355668999999999999999998875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.02  E-value=0.00041  Score=56.47  Aligned_cols=23  Identities=22%  Similarity=0.447  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +-|.||+||||||+++.++..++
T Consensus        95 igI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           95 IGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc
Confidence            33999999999999999999875

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.01  E-value=0.00041  Score=51.59  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=26.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS   75 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~   75 (225)
                      +|++|++|+|||++|..++.. +.+.+++....
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~   33 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ   33 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred             EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence            679999999999999999977 77777776543

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.01  E-value=0.00023  Score=62.88  Aligned_cols=47  Identities=32%  Similarity=0.530  Sum_probs=36.9

Q ss_pred             eeeEeccc-ceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYK-RLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~-~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|. ....+++.++..+++.++ ++||+|+||||+++.++..+.
T Consensus       358 ~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~  406 (598)
T 3qf4_B          358 KNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD  406 (598)
T ss_dssp             EEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred             EEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            34455553 234678888989888777 999999999999999998774

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.99  E-value=0.00052  Score=54.54  Aligned_cols=26  Identities=35%  Similarity=0.445  Sum_probs=20.9

Q ss_pred             eCC-cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          39 EKS-NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        39 ~~~-~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+ -++|+||||+|||||++.++..+
T Consensus        28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~   54 (279)
T 1nlf_A           28 VAGTVGALVSPGGAGKSMLALQLAAQI   54 (279)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            344 45599999999999999988654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.94  E-value=0.00037  Score=53.14  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -+.|.||+|+|||||++.++..
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3449999999999999999875

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.93  E-value=0.00057  Score=55.84  Aligned_cols=25  Identities=36%  Similarity=0.599  Sum_probs=21.3

Q ss_pred             CCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          40 KSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        40 ~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ++.++ |+||+|+||||+++.++..+
T Consensus       128 ~g~vi~lvG~nGaGKTTll~~Lag~l  153 (328)
T 3e70_C          128 KPYVIMFVGFNGSGKTTTIAKLANWL  153 (328)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34444 99999999999999999877

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=96.93  E-value=0.0035  Score=61.23  Aligned_cols=82  Identities=18%  Similarity=0.265  Sum_probs=50.7

Q ss_pred             eeCC-cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCc--------------cCCcHHHHHHHHHHhcch
Q psy5910          38 LEKS-NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGY--------------VGDDVESIIQKLLHECDY   99 (225)
Q Consensus        38 ~~~~-~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~--------------~g~~~~~~~~~~~~~~~~   99 (225)
                      .|++ -++++||+||||||||-.+..+.   |..+.+++...-.+..|              .....+..+..+    ..
T Consensus      1428 ~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~----~~ 1503 (1706)
T 3cmw_A         1428 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEIC----DA 1503 (1706)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHH----HH
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHH----HH
Confidence            3443 45599999999999987665433   67788887742211111              011112223222    23


Q ss_pred             hhhhhCCCEEEEcchhhhcccccc
Q psy5910         100 DVELAEQSIIYIDEIDKISKKTDV  123 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~~~~  123 (225)
                      .++.....+|++|.+..+.+....
T Consensus      1504 ~~~s~~~~~vvvDsv~al~~~~e~ 1527 (1706)
T 3cmw_A         1504 LARSGAVDVIVVDSVAALTPKAEI 1527 (1706)
T ss_dssp             HHHHTCCSEEEESCSTTCCCTTTT
T ss_pred             HHHcCCCCEEEEccHHhCCccccc
Confidence            345668899999999999987543

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.91  E-value=0.00032  Score=51.82  Aligned_cols=24  Identities=25%  Similarity=0.527  Sum_probs=21.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+.++|++|||||||++.++..+.
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~~~~~   27 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMMPILR   27 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            456999999999999999998873

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.91  E-value=0.001  Score=54.09  Aligned_cols=41  Identities=24%  Similarity=0.405  Sum_probs=29.0

Q ss_pred             cceeeeCCc-EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          34 KNIYLEKSN-ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        34 ~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      +++....+. ++++||+|+||||++..+|..+   +..+..+++.
T Consensus        98 l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D  142 (320)
T 1zu4_A           98 IDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD  142 (320)
T ss_dssp             CCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            444334444 4499999999999999998776   5556665543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=96.91  E-value=0.00072  Score=58.44  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=22.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      .++|.|.|||||||+|++|++.++.
T Consensus       397 ~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          397 SIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             EEEecccCCCCHHHHHHHHHHHHHH
Confidence            5669999999999999999999975

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=96.90  E-value=0.00055  Score=54.36  Aligned_cols=23  Identities=48%  Similarity=0.717  Sum_probs=20.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+.||+|+|||||.+.|+...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            56799999999999999999876

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.87  E-value=0.00055  Score=56.92  Aligned_cols=23  Identities=39%  Similarity=0.719  Sum_probs=20.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .++++||+|+||||++++++..+
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~~  160 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDYI  160 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            46699999999999999999876

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=96.87  E-value=0.00042  Score=60.54  Aligned_cols=35  Identities=20%  Similarity=0.433  Sum_probs=27.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~   76 (225)
                      .+.|+|++||||||++++|+..++    ..+..+++..+
T Consensus       371 iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~  409 (552)
T 3cr8_A          371 TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV  409 (552)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred             EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence            455999999999999999999884    34555666544

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.87  E-value=0.0015  Score=48.07  Aligned_cols=31  Identities=19%  Similarity=0.168  Sum_probs=24.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~   72 (225)
                      -+.+.|++|+||||++..++..+   +..+..+.
T Consensus         6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik   39 (169)
T 1xjc_A            6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK   39 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence            45599999999999999998876   44444444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.87  E-value=0.00063  Score=59.16  Aligned_cols=48  Identities=23%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             eEeecccce-eeeCCcEE-EEcCCCCcHHHHHHH--HHHHh--CCCeEEeccCc
Q psy5910          28 LFLLKSKNI-YLEKSNIL-LVGPTGCGKTLMVKT--LAKII--NVPIIVVDATS   75 (225)
Q Consensus        28 ~~~~~~~~~-~~~~~~vL-l~Gp~GtGKT~la~~--ia~~~--~~~~~~~~~~~   75 (225)
                      ...++++++ ..+.+.++ |.||+|||||||++.  ++...  +...+++++.+
T Consensus        25 ~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~   78 (525)
T 1tf7_A           25 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   78 (525)
T ss_dssp             CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence            344566666 66766555 999999999999999  44444  44556665543

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.87  E-value=0.00059  Score=56.51  Aligned_cols=26  Identities=27%  Similarity=0.598  Sum_probs=22.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      .+.|+||+|||||||++.|+..+...
T Consensus       172 k~~IvG~nGsGKSTLlk~L~gl~~~~  197 (365)
T 1lw7_A          172 TVAILGGESSGKSVLVNKLAAVFNTT  197 (365)
T ss_dssp             EEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            45599999999999999999987553

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.85  E-value=0.00099  Score=54.00  Aligned_cols=79  Identities=18%  Similarity=0.297  Sum_probs=45.3

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCccccc------Cc--------cCCcHHHH-HHHHHHhcch
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEA------GY--------VGDDVESI-IQKLLHECDY   99 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~~~~------~~--------~g~~~~~~-~~~~~~~~~~   99 (225)
                      ++.++++||||+|||+||-.++...     +..+++++...-...      ++        ...+.+.. +..+ ... .
T Consensus        28 ~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~-~~l-~  105 (333)
T 3io5_A           28 SGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMV-NQL-D  105 (333)
T ss_dssp             SEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHH-HHH-H
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHH-HHH-H
Confidence            3356799999999999987665433     556777777532110      00        01122222 2111 110 0


Q ss_pred             hhhhhCCCEEEEcchhhhccc
Q psy5910         100 DVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~  120 (225)
                      .++...+.+|++|-+..+.+.
T Consensus       106 ~i~~~~~~lvVIDSI~aL~~~  126 (333)
T 3io5_A          106 AIERGEKVVVFIDSLGNLASK  126 (333)
T ss_dssp             TCCTTCCEEEEEECSTTCBCC
T ss_pred             HhhccCceEEEEecccccccc
Confidence            023457899999999999853

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.84  E-value=0.00065  Score=60.07  Aligned_cols=45  Identities=31%  Similarity=0.471  Sum_probs=32.3

Q ss_pred             eeeEecccce-EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRL-FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~-~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|+.. ....+.+ ..+.+.++ |+||+|+|||||++.|+..+
T Consensus        95 ~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll  141 (607)
T 3bk7_A           95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQL  141 (607)
T ss_dssp             GSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence            3455555433 2556666 55666666 99999999999999999765

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=96.83  E-value=0.00073  Score=58.70  Aligned_cols=34  Identities=32%  Similarity=0.516  Sum_probs=26.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATS   75 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~   75 (225)
                      -|+++|.||+||||+|+.+++.+   +.....++..+
T Consensus        37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~   73 (520)
T 2axn_A           37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE   73 (520)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence            46699999999999999999988   44444455433

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.82  E-value=0.00057  Score=60.04  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=29.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~   76 (225)
                      .|+|.|+||+||||+|+.+++.++    .+++.++...+
T Consensus       398 ~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i  436 (573)
T 1m8p_A          398 TIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV  436 (573)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred             EEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence            466999999999999999999885    77888876554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.82  E-value=0.00053  Score=56.26  Aligned_cols=34  Identities=15%  Similarity=0.313  Sum_probs=26.3

Q ss_pred             ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +++.++....+.++ |.||||+|||||.+.++..+
T Consensus        45 l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~   79 (337)
T 2qm8_A           45 IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL   79 (337)
T ss_dssp             HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence            34455555556665 99999999999999999765

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.82  E-value=0.0032  Score=54.33  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      ..|+++|++|+||||++..++..+   |.....+++.
T Consensus       102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D  138 (504)
T 2j37_W          102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD  138 (504)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            357799999999999999999766   6667766663

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.82  E-value=0.00082  Score=49.76  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -+.+.|++|+||||+++.+...+
T Consensus         8 ~i~i~G~sGsGKTTl~~~l~~~l   30 (174)
T 1np6_A            8 LLAFAAWSGTGKTTLLKKLIPAL   30 (174)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhc
Confidence            45699999999999999998765

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.81  E-value=0.00065  Score=54.97  Aligned_cols=35  Identities=23%  Similarity=0.252  Sum_probs=27.2

Q ss_pred             EeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          29 FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ...+..-+.....+++|.|+||+|||++|..+.+.
T Consensus       133 ~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          133 TSLHGVLVDVYGVGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             eeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhc
Confidence            33444445566678999999999999999999875

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.81  E-value=0.00075  Score=57.02  Aligned_cols=59  Identities=20%  Similarity=0.157  Sum_probs=36.5

Q ss_pred             HHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          13 TKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        13 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      +++.+.+.+...+....  .++++. +...+++.|++|+||||++..+|..+   +..+..+++.
T Consensus        74 ~~~~v~~~L~~~~~~~~--~~i~l~-~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D  135 (425)
T 2ffh_A           74 ILATVYEALKEALGGEA--RLPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD  135 (425)
T ss_dssp             HHHHHHHHHHHHTTSSC--CCCCCC-SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHhCCCc--ccccCC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecc
Confidence            34444444444443221  334444 33345589999999999999999877   4556666553

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.79  E-value=0.0015  Score=52.47  Aligned_cols=36  Identities=33%  Similarity=0.490  Sum_probs=27.2

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATS   75 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~   75 (225)
                      ...++++||+|+||||++..+|..+    |..+..+++..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~  144 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT  144 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence            3456699999999999999998765    44666666543

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.78  E-value=0.00038  Score=59.52  Aligned_cols=31  Identities=23%  Similarity=0.326  Sum_probs=24.1

Q ss_pred             cceeeeCC-cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          34 KNIYLEKS-NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        34 ~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .++....+ .+.|.||+|||||||+|.|+...
T Consensus       131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence            34444444 45599999999999999999876

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.77  E-value=0.00059  Score=56.52  Aligned_cols=32  Identities=31%  Similarity=0.422  Sum_probs=25.0

Q ss_pred             cceeeeCC-cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          34 KNIYLEKS-NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        34 ~~~~~~~~-~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .++..+.+ .+++.||+|+||||++++++..++
T Consensus       168 l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          168 LRRAVQLERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             HHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             HHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34444444 566999999999999999998874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.76  E-value=0.00091  Score=56.44  Aligned_cols=24  Identities=38%  Similarity=0.555  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+++.||+|+||||+.++++..++
T Consensus       169 ii~I~GpnGSGKTTlL~allg~l~  192 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQELN  192 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             eEEEECCCCCCHHHHHHHHHhhcC
Confidence            456999999999999999999884

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.74  E-value=0.00092  Score=49.77  Aligned_cols=29  Identities=21%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             cceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910          34 KNIYLEKSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        34 ~~~~~~~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .++..+...|++.|++|+|||+|.+.+..
T Consensus        17 ~~~~~~~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           17 LGLWNKHGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -------CEEEEEESTTSSHHHHHHHHHH
T ss_pred             hhccCCccEEEEECCCCCCHHHHHHHHhc
Confidence            33445556899999999999999999986

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=96.74  E-value=0.0009  Score=48.15  Aligned_cols=27  Identities=19%  Similarity=0.443  Sum_probs=21.6

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+-.+|+||.|+|||++..+|.-.+
T Consensus        21 f~~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           21 FKEGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            334345699999999999999998655

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=96.73  E-value=0.00052  Score=60.30  Aligned_cols=46  Identities=13%  Similarity=0.253  Sum_probs=33.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..++|.+..++.|.+.+...            ....+.++++||+|+|||+||+.+++
T Consensus       124 ~~~vGR~~~l~~L~~~L~~~------------~~~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          124 VVFVTRKKLVNAIQQKLSKL------------KGEPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SSCCCCHHHHHHHHHHHTTS------------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CeecccHHHHHHHHHHHhcc------------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence            45788888888887766211            01123566999999999999998864

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.73  E-value=0.00098  Score=53.60  Aligned_cols=40  Identities=28%  Similarity=0.300  Sum_probs=28.2

Q ss_pred             ccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          33 SKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        33 ~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      +.++. +...+.++|++|+||||++..+|..+   +..+..+++
T Consensus        92 ~i~~~-~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~  134 (295)
T 1ls1_A           92 LPVLK-DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA  134 (295)
T ss_dssp             CCCCC-SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eeecC-CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence            34444 33345589999999999999999776   455555554

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.69  E-value=0.00044  Score=58.36  Aligned_cols=33  Identities=30%  Similarity=0.326  Sum_probs=26.7

Q ss_pred             ecccceeeeCCcE---EEEcCCCCcHHHHHHHHHHH
Q psy5910          31 LKSKNIYLEKSNI---LLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        31 ~~~~~~~~~~~~v---Ll~Gp~GtGKT~la~~ia~~   63 (225)
                      +++.++..+.+.+   .|+||+|+|||||.+.|+..
T Consensus        30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred             cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence            6667777777765   59999999999999999865

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=96.68  E-value=0.0014  Score=60.43  Aligned_cols=33  Identities=21%  Similarity=0.429  Sum_probs=24.2

Q ss_pred             ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHH
Q psy5910          31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~   63 (225)
                      ..+.++..+.+.++ |+||+|+||||+.|.++..
T Consensus       663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             cccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            34455555545555 9999999999999988743

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.67  E-value=0.0019  Score=56.29  Aligned_cols=30  Identities=40%  Similarity=0.634  Sum_probs=24.7

Q ss_pred             ceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          35 NIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        35 ~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ++..+.+.++ |.||+|+|||||++.|+...
T Consensus       306 ~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~  336 (538)
T 1yqt_A          306 PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVE  336 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3344666666 99999999999999999876

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=96.67  E-value=0.00045  Score=58.02  Aligned_cols=40  Identities=23%  Similarity=0.415  Sum_probs=31.7

Q ss_pred             cceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          26 KRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...+++.++...++-+.|+||+|+|||||.++|+-.++
T Consensus        46 ~nf~~l~~v~l~~~~G~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           46 RNLATITQLELELGGGFCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             EEETTEEEEEEECCSSEEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             ccccceeeEEEecCCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence            3445566777878777555999999999999999987775

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.67  E-value=0.00053  Score=59.39  Aligned_cols=33  Identities=21%  Similarity=0.417  Sum_probs=25.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCC--CeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINV--PIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~--~~~~~~~   73 (225)
                      ..+++.||+|+||||++++++..+..  ..+.+..
T Consensus       261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied  295 (511)
T 2oap_1          261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED  295 (511)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence            35889999999999999999988742  3445443

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=96.66  E-value=0.0018  Score=59.92  Aligned_cols=31  Identities=16%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             cccceeeeCCcEE-EEcCCCCcHHHHHHHHHH
Q psy5910          32 KSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        32 ~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~   62 (225)
                      .+.++....+.++ |+||+|+||||+.|.++.
T Consensus       653 ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial  684 (934)
T 3thx_A          653 NDVYFEKDKQMFHIITGPNMGGKSTYIRQTGV  684 (934)
T ss_dssp             EEEEEETTTBCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccceeecCCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3455555544444 999999999999999853

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=96.62  E-value=0.00089  Score=62.04  Aligned_cols=36  Identities=22%  Similarity=0.428  Sum_probs=31.4

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.++....+.++ |+||+|+|||||++.|+..+
T Consensus       687 ~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll  723 (986)
T 2iw3_A          687 PQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL  723 (986)
T ss_dssp             CSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred             eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4567888888888777 99999999999999999876

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=96.61  E-value=0.0012  Score=49.19  Aligned_cols=23  Identities=22%  Similarity=0.572  Sum_probs=20.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+.|++|+|||||.+.++...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~   53 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNE   53 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57799999999999999998754

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.60  E-value=0.0014  Score=50.13  Aligned_cols=24  Identities=33%  Similarity=0.483  Sum_probs=21.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -|.|.|++|+||||+++.+++.+.
T Consensus         8 ~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            8 FVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            355999999999999999999883

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=96.60  E-value=0.0011  Score=56.60  Aligned_cols=69  Identities=14%  Similarity=0.208  Sum_probs=48.9

Q ss_pred             CCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcce--eeccCc----
Q psy5910         106 QSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNIL--FIAGGA----  179 (225)
Q Consensus       106 ~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~--~i~~~~----  179 (225)
                      +.|+||||++.+...             +++.|++.|+..             ...  +++++| |..  .|...+    
T Consensus       296 ~~VliIDEa~~l~~~-------------a~~aLlk~lEe~-------------~~~--~~il~t-n~~~~~i~~~~~~~~  346 (456)
T 2c9o_A          296 PGVLFVDEVHMLDIE-------------CFTYLHRALESS-------------IAP--IVIFAS-NRGNCVIRGTEDITS  346 (456)
T ss_dssp             ECEEEEESGGGCBHH-------------HHHHHHHHTTST-------------TCC--EEEEEE-CCSEEECBTTSSCEE
T ss_pred             ceEEEEechhhcCHH-------------HHHHHHHHhhcc-------------CCC--EEEEec-CCccccccccccccc
Confidence            479999999999866             899999999852             122  544454 331  122222    


Q ss_pred             cccHHHHHHhhcccccccccccccc
Q psy5910         180 FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       180 ~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +..+++.+++||.. +.|+.++.++
T Consensus       347 ~~~l~~~i~sR~~~-~~~~~~~~~e  370 (456)
T 2c9o_A          347 PHGIPLDLLDRVMI-IRTMLYTPQE  370 (456)
T ss_dssp             ETTCCHHHHTTEEE-EECCCCCHHH
T ss_pred             cccCChhHHhhcce-eeCCCCCHHH
Confidence            56899999999977 5787777765

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.59  E-value=0.011  Score=45.00  Aligned_cols=29  Identities=17%  Similarity=0.156  Sum_probs=22.3

Q ss_pred             EEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          45 LVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      ++||.|+||||.+-.++..+   +..++.+.+
T Consensus        33 itG~MgsGKTT~lL~~a~r~~~~g~kVli~k~   64 (214)
T 2j9r_A           33 ICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP   64 (214)
T ss_dssp             EECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence            89999999998876665544   677777664

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=96.58  E-value=0.0013  Score=49.14  Aligned_cols=22  Identities=23%  Similarity=0.638  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+.+.|++|+|||+|.+.++..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6789999999999999999875

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.58  E-value=0.0022  Score=56.72  Aligned_cols=30  Identities=40%  Similarity=0.625  Sum_probs=24.6

Q ss_pred             ceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          35 NIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        35 ~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ++....+.++ |.||+|+|||||++.|+..+
T Consensus       376 ~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          376 PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3334666666 99999999999999999876

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=96.54  E-value=0.0014  Score=57.08  Aligned_cols=30  Identities=33%  Similarity=0.554  Sum_probs=24.9

Q ss_pred             ceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          35 NIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        35 ~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ++..+.+.++ |.||+|||||||++.|+...
T Consensus       288 ~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~  318 (538)
T 3ozx_A          288 NGEAKEGEIIGILGPNGIGKTTFARILVGEI  318 (538)
T ss_dssp             CEEEETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             cceECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3445667777 99999999999999999876

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=96.54  E-value=0.00071  Score=54.68  Aligned_cols=32  Identities=22%  Similarity=0.302  Sum_probs=24.9

Q ss_pred             ecccceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910          31 LKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        31 ~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ++..-+.....+|||.|+||+|||++|-.+.+
T Consensus       138 ~H~~~v~~~g~gvli~G~sG~GKStlal~l~~  169 (312)
T 1knx_A          138 IHGVLLEVFGVGVLLTGRSGIGKSECALDLIN  169 (312)
T ss_dssp             EEEEEEEETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred             eEEEEEEECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            33344445667899999999999999988765

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.53  E-value=0.0026  Score=48.77  Aligned_cols=27  Identities=30%  Similarity=0.267  Sum_probs=23.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPI   68 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~   68 (225)
                      -+.+.|++|+||||+++.+++.++.+.
T Consensus         7 ~i~~eG~~g~GKst~~~~l~~~l~~~~   33 (216)
T 3tmk_A            7 LILIEGLDRTGKTTQCNILYKKLQPNC   33 (216)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcccc
Confidence            455999999999999999999997643

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=96.52  E-value=0.0016  Score=54.02  Aligned_cols=31  Identities=19%  Similarity=0.459  Sum_probs=23.8

Q ss_pred             cceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          34 KNIYLEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        34 ~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+..+.+-.+|+||+|+||||+..+|+-.+
T Consensus        17 ~~i~~~~g~~~i~G~NGaGKTTll~ai~~al   47 (365)
T 3qf7_A           17 VDIEFQSGITVVEGPNGAGKSSLFEAISFAL   47 (365)
T ss_dssp             EEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEecCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            3454555556699999999999999998554

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.51  E-value=0.0015  Score=50.65  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -+.+.|++|+||||+++.+++.++
T Consensus         4 ~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            4 RLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            466999999999999999999984

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.50  E-value=0.012  Score=49.86  Aligned_cols=35  Identities=34%  Similarity=0.543  Sum_probs=27.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATS   75 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~   75 (225)
                      ..++++|++|+||||++-.+|..+    |..+..+++..
T Consensus       101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~  139 (433)
T 2xxa_A          101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV  139 (433)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence            356689999999999998888665    66777777754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.49  E-value=0.0013  Score=50.85  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=17.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -|.|.|++|+||||+++.+++.+
T Consensus        27 ~I~~eG~~GsGKsT~~~~l~~~l   49 (227)
T 3v9p_A           27 FITFEGIDGAGKTTHLQWFCDRL   49 (227)
T ss_dssp             EEEEECCC---CHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            35589999999999999999887

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=96.45  E-value=0.0015  Score=52.62  Aligned_cols=22  Identities=27%  Similarity=0.625  Sum_probs=18.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+.+.||+|+|||||.+.++..
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~   41 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLT   41 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC-
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4589999999999999997643

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=96.45  E-value=0.0018  Score=53.57  Aligned_cols=35  Identities=17%  Similarity=0.243  Sum_probs=26.7

Q ss_pred             eecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          30 LLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        30 ~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+.++..+.+-..|+||+|+|||++.++|+-.+
T Consensus        16 ~~~~~~~~~~~g~~~i~G~nG~GKttll~ai~~~~   50 (359)
T 2o5v_A           16 NLAPGTLNFPEGVTGIYGENGAGKTNLLEAAYLAL   50 (359)
T ss_dssp             TCCSEEEECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceeeeEEEEcCCeEEEECCCCCChhHHHHHHHHhc
Confidence            34455666666545599999999999999998644

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.45  E-value=0.0017  Score=46.34  Aligned_cols=22  Identities=27%  Similarity=0.526  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|++.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6889999999999999998864

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.45  E-value=0.0019  Score=50.20  Aligned_cols=23  Identities=22%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -+.|.|++|+||||+++.+++.+
T Consensus        29 ~i~~eG~~GsGKsT~~~~l~~~l   51 (236)
T 3lv8_A           29 FIVIEGLEGAGKSTAIQVVVETL   51 (236)
T ss_dssp             EEEEEESTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            45599999999999999999887

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.43  E-value=0.0037  Score=52.11  Aligned_cols=34  Identities=26%  Similarity=0.421  Sum_probs=26.2

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVD   72 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~   72 (225)
                      ..+++++.||+|+|||++++.++..+   +..++.++
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            45689999999999999999887654   44444444

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.42  E-value=0.0021  Score=48.65  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=21.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...++++|++|+|||+|+..+....
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998754

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.42  E-value=0.003  Score=51.21  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=25.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      -+++.|+||+|||++|..++...   +.++.+++..
T Consensus        70 l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            45599999999999999888554   4566666654

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.40  E-value=0.0017  Score=49.99  Aligned_cols=21  Identities=33%  Similarity=0.594  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      +.|.|++|+||||+++.++..
T Consensus        23 i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           23 VLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEECSTTSCHHHHHHTTGGG
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            349999999999999999987

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.38  E-value=0.0018  Score=46.39  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            37889999999999999998864

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.38  E-value=0.0014  Score=58.68  Aligned_cols=32  Identities=22%  Similarity=0.433  Sum_probs=27.3

Q ss_pred             eecccceeeeCCcEE-EEcCCCCcHHHHHHHHH
Q psy5910          30 LLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        30 ~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia   61 (225)
                      .+++.++..+.+.++ |+||+|||||||++.+.
T Consensus       337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             ccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            467888999988877 99999999999997653

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=96.37  E-value=0.0023  Score=48.76  Aligned_cols=30  Identities=30%  Similarity=0.407  Sum_probs=24.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      .|-|+|..||||||+++.+++ +|.+++..+
T Consensus        11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD   40 (210)
T 4i1u_A           11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTD   40 (210)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence            455999999999999999998 777765543

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.36  E-value=0.002  Score=55.11  Aligned_cols=24  Identities=38%  Similarity=0.584  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .|+++|.||+||||+++.+++.++
T Consensus        41 ~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           41 LIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            577999999999999999998874

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.36  E-value=0.0008  Score=52.99  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -|.|.|++|+||||+++.|++.+.
T Consensus        26 ~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           26 KISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            456999999999999999999883

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.36  E-value=0.0023  Score=45.93  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|++.+...
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            6889999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.36  E-value=0.0023  Score=51.88  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=20.5

Q ss_pred             eCCc-EEEEcCCCCcHHHHHHHHHHH
Q psy5910          39 EKSN-ILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        39 ~~~~-vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      +.+. ++++||||+|||++|..++..
T Consensus        96 ~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           96 ESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4444 559999999999999998865

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.35  E-value=0.0018  Score=47.77  Aligned_cols=21  Identities=43%  Similarity=0.811  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+++.|++|+|||+|.+.++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999999875

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.0026  Score=47.09  Aligned_cols=25  Identities=28%  Similarity=0.533  Sum_probs=21.5

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...++++|++|+|||+|...+....
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578899999999999999998653

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.33  E-value=0.0016  Score=62.40  Aligned_cols=47  Identities=26%  Similarity=0.540  Sum_probs=37.5

Q ss_pred             eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|..   ...+++.++..+++.++ ++||+|+|||||++.++..+.
T Consensus       391 ~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~  441 (1284)
T 3g5u_A          391 KNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD  441 (1284)
T ss_dssp             EEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred             EEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            345555542   34678889999988777 999999999999999998774

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.32  E-value=0.0026  Score=48.97  Aligned_cols=24  Identities=33%  Similarity=0.425  Sum_probs=20.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      |.|.|++|+||||+++.+++.++.
T Consensus        24 i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           24 ITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHhh
Confidence            448899999999999999987744

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.32  E-value=0.0026  Score=48.10  Aligned_cols=29  Identities=17%  Similarity=0.367  Sum_probs=22.9

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      ..++-.+|+||.|+|||++..+|.-.++.
T Consensus        21 f~~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           21 FKEGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             eCCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            34445569999999999999999876643

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.31  E-value=0.0025  Score=45.47  Aligned_cols=23  Identities=26%  Similarity=0.486  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+++.|++|+|||+|++.+....
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            68899999999999999998643

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.29  E-value=0.0025  Score=46.14  Aligned_cols=21  Identities=29%  Similarity=0.548  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+.+.|++|+|||+|.+.+..
T Consensus         5 ~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            5 EIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999985

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.27  E-value=0.0027  Score=46.14  Aligned_cols=24  Identities=17%  Similarity=0.390  Sum_probs=20.8

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ....|++.|++|+|||+|.+.+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345788999999999999999875

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.27  E-value=0.0028  Score=45.34  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6889999999999999988754

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=96.27  E-value=0.0012  Score=57.56  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=31.8

Q ss_pred             echhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910           8 IGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus         8 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      +|.+..++.|.+.+...-           ....+.|.++|+.|+|||+||+.+++
T Consensus       131 ~GR~~~~~~l~~~L~~~~-----------~~~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          131 YIREYHVDRVIKKLDEMC-----------DLDSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             CCCHHHHHHHHHHHHHHT-----------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHhccc-----------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence            588888888887762110           01123455999999999999999997

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.26  E-value=0.0028  Score=48.44  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=20.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -|.|.|++|+||||.++.+++.+
T Consensus         5 ~i~~eG~~gsGKsT~~~~l~~~l   27 (213)
T 4tmk_A            5 YIVIEGLEGAGKTTARNVVVETL   27 (213)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            35589999999999999999887

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=96.25  E-value=0.0028  Score=56.31  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=18.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+++.||||||||+++..+...+
T Consensus       196 ~~~li~GppGTGKT~~~~~~i~~l  219 (624)
T 2gk6_A          196 PLSLIQGPPGTGKTVTSATIVYHL  219 (624)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHH
Confidence            456799999999998776665443

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.23  E-value=0.0026  Score=45.67  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .|++.|++|+|||+|.+.+...-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68899999999999999887543

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.23  E-value=0.0024  Score=61.20  Aligned_cols=37  Identities=32%  Similarity=0.648  Sum_probs=33.0

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ..+++.++..+++.++ |+||+|+|||||++.++....
T Consensus      1047 ~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A         1047 PVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp             CSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred             eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence            4678899999998888 999999999999999998763

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.23  E-value=0.0033  Score=55.55  Aligned_cols=35  Identities=31%  Similarity=0.491  Sum_probs=27.5

Q ss_pred             eecccceeeeCC-----cEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          30 LLKSKNIYLEKS-----NIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        30 ~~~~~~~~~~~~-----~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+.++....+     .++ |.||+|+|||||++.|+...
T Consensus       362 ~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~  402 (608)
T 3j16_B          362 TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL  402 (608)
T ss_dssp             ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred             ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCC
Confidence            455666766665     344 99999999999999999876

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.21  E-value=0.0032  Score=54.98  Aligned_cols=35  Identities=20%  Similarity=0.389  Sum_probs=27.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      .++|.|++|+||||+|+.+++.+   |.++..++...+
T Consensus       374 ~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i  411 (546)
T 2gks_A          374 CVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV  411 (546)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred             EEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence            46699999999999999999877   446677766544

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.21  E-value=0.0024  Score=47.02  Aligned_cols=22  Identities=27%  Similarity=0.495  Sum_probs=19.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..+++.|++|+|||+|.+.++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            3688999999999999999986

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=96.20  E-value=0.0033  Score=54.59  Aligned_cols=36  Identities=31%  Similarity=0.432  Sum_probs=25.8

Q ss_pred             eeCCcEE-EEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          38 LEKSNIL-LVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      .+++.++ +.||||+|||||++.++...   +.+.+++..
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~  317 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAY  317 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEE
Confidence            4455454 99999999999999998765   334444443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.20  E-value=0.0032  Score=45.29  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=20.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -.|++.|++|+|||+|.+.+....
T Consensus         7 ~~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            7 LKVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            378999999999999999988653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.20  E-value=0.0031  Score=45.75  Aligned_cols=23  Identities=22%  Similarity=0.475  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999998754

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.19  E-value=0.003  Score=55.88  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=20.1

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+++.|+||||||+++..+...+
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l  188 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAAL  188 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence            3567899999999999887776554

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.18  E-value=0.0033  Score=45.27  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7889999999999999998864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.18  E-value=0.0032  Score=45.27  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=19.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVED   26 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6889999999999999998753

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=96.16  E-value=0.011  Score=50.06  Aligned_cols=21  Identities=33%  Similarity=0.575  Sum_probs=17.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      -.++.|+||||||++...+++
T Consensus       163 v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          163 VVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             EEEEEECTTSCHHHHHHHHCC
T ss_pred             EEEEEcCCCCCHHHHHHHHhc
Confidence            345999999999999877764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.16  E-value=0.0034  Score=45.71  Aligned_cols=23  Identities=22%  Similarity=0.512  Sum_probs=20.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            37889999999999999988764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.16  E-value=0.0029  Score=51.80  Aligned_cols=29  Identities=17%  Similarity=0.417  Sum_probs=21.7

Q ss_pred             eeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          36 IYLEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +...++-.+|+||.|+|||++..+|+-.+
T Consensus        19 i~f~~~~~~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           19 VEFKEGINLIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             EECCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EcCCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            33444445699999999999999986543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.14  E-value=0.0032  Score=45.53  Aligned_cols=21  Identities=33%  Similarity=0.616  Sum_probs=19.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            688999999999999998874

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.14  E-value=0.0038  Score=44.79  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            37889999999999999998863

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.13  E-value=0.0014  Score=49.13  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=20.9

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+...+++.|++|+|||+|.+.+..
T Consensus        23 ~~~~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           23 KKTGKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhc
Confidence            3445788999999999999998863

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=96.13  E-value=0.0031  Score=56.43  Aligned_cols=29  Identities=24%  Similarity=0.517  Sum_probs=25.5

Q ss_pred             EeecccceeeeCCcEE-EEcCCCCcHHHHH
Q psy5910          29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMV   57 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la   57 (225)
                      ..+++.++..+.+.++ |+||+|+|||||+
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            4577889999998877 9999999999996

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.10  E-value=0.0022  Score=54.07  Aligned_cols=23  Identities=26%  Similarity=0.543  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .|.|+||+|+|||||.+.++...
T Consensus        33 ~I~lvG~sGaGKSTLln~L~g~~   55 (418)
T 2qag_C           33 TLMVVGESGLGKSTLINSLFLTD   55 (418)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            35899999999999999998654

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.10  E-value=0.0039  Score=44.67  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|.+.+...
T Consensus         5 ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6889999999999999999863

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.09  E-value=0.0039  Score=44.62  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|.+.+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999998754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.09  E-value=0.0055  Score=50.17  Aligned_cols=33  Identities=12%  Similarity=0.175  Sum_probs=25.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      -+++.|+||+|||++|..+|...   +.++.+++..
T Consensus        48 LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           48 LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            45599999999999999887664   6667676654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.08  E-value=0.0037  Score=45.01  Aligned_cols=20  Identities=35%  Similarity=0.752  Sum_probs=18.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia   61 (225)
                      .+++.|++|+|||+|.+.+.
T Consensus         4 ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999986

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=96.08  E-value=0.0011  Score=51.26  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.|+||+||||||+.++|+..+.
T Consensus        30 ~~i~GpnGsGKSTll~~i~g~~~   52 (227)
T 1qhl_A           30 TTLSGGNGAGKSTTMAAFVTALI   52 (227)
T ss_dssp             HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcccc
Confidence            44899999999999999998874

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=96.07  E-value=0.0029  Score=55.95  Aligned_cols=26  Identities=38%  Similarity=0.553  Sum_probs=22.1

Q ss_pred             eCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          39 EKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        39 ~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+.++ |.||+|+|||||.+.|+..+
T Consensus       101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll  127 (608)
T 3j16_B          101 RPGQVLGLVGTNGIGKSTALKILAGKQ  127 (608)
T ss_dssp             CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            345566 99999999999999999866

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.07  E-value=0.0039  Score=45.83  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=20.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999863

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.06  E-value=0.0038  Score=44.92  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            688999999999999999875

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.06  E-value=0.0034  Score=45.03  Aligned_cols=21  Identities=29%  Similarity=0.695  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+++.|++|+|||+|.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            688999999999999998853

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.02  E-value=0.0042  Score=45.06  Aligned_cols=23  Identities=17%  Similarity=0.353  Sum_probs=20.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        15 ~~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           15 FKLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47889999999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.01  E-value=0.0039  Score=45.48  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|+||+|||+|.+.++..
T Consensus         6 ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            6 KVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6789999999999999999864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.01  E-value=0.0044  Score=45.69  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|++.+...
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            37889999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.99  E-value=0.0043  Score=45.06  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..+++.|++|+|||+|.+.+...
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37889999999999999998865

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.99  E-value=0.0046  Score=44.51  Aligned_cols=23  Identities=35%  Similarity=0.486  Sum_probs=20.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            37889999999999999999753

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.99  E-value=0.0038  Score=51.52  Aligned_cols=24  Identities=25%  Similarity=0.506  Sum_probs=20.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+.|.||||+|||||+++|+....
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g~~~  240 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLGLQN  240 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCSS
T ss_pred             EEEEECCCCccHHHHHHHHhcccc
Confidence            456999999999999999996543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=95.99  E-value=0.0046  Score=44.81  Aligned_cols=24  Identities=17%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.|++|+|||+|.+.+....
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            378999999999999999998643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=95.98  E-value=0.0046  Score=45.32  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .|++.|++|+|||+|.+.+....
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            68899999999999999998643

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.98  E-value=0.0045  Score=45.53  Aligned_cols=22  Identities=41%  Similarity=0.755  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|.+.+...
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999864

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=95.97  E-value=0.0046  Score=45.73  Aligned_cols=23  Identities=26%  Similarity=0.587  Sum_probs=20.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            36899999999999999998864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=95.97  E-value=0.0047  Score=45.13  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            47899999999999999998864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=95.96  E-value=0.0043  Score=47.04  Aligned_cols=25  Identities=28%  Similarity=0.541  Sum_probs=21.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ..+++.|++|+||||++..++..+.
T Consensus        31 ~~i~i~G~~g~GKTTl~~~l~~~~~   55 (221)
T 2wsm_A           31 VAVNIMGAIGSGKTLLIERTIERIG   55 (221)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3677999999999999999988763

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.96  E-value=0.0031  Score=50.76  Aligned_cols=24  Identities=17%  Similarity=0.357  Sum_probs=20.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -+.+.||||+|||||.++|+....
T Consensus       171 iv~l~G~sG~GKSTll~~l~g~~~  194 (301)
T 1u0l_A          171 ISTMAGLSGVGKSSLLNAINPGLK  194 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             eEEEECCCCCcHHHHHHHhccccc
Confidence            344999999999999999997653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.96  E-value=0.0074  Score=49.69  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=24.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      .|.++|+||+||||++..++..+   +..+..++.
T Consensus        81 ~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~  115 (355)
T 3p32_A           81 RVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAV  115 (355)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEec
Confidence            56699999999999999998776   555444443

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=95.95  E-value=0.0041  Score=50.08  Aligned_cols=21  Identities=33%  Similarity=0.618  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.|.||||+|||||.++|+ ..
T Consensus       168 ~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          168 CILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             EEEECSTTSSHHHHHHHHH-SC
T ss_pred             EEEECCCCCCHHHHHHHHH-Hh
Confidence            4499999999999999999 65

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.94  E-value=0.0046  Score=45.73  Aligned_cols=23  Identities=26%  Similarity=0.492  Sum_probs=20.2

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHH
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ...+++.|++|+|||+|.+.+..
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35789999999999999998874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=95.94  E-value=0.0043  Score=45.09  Aligned_cols=22  Identities=27%  Similarity=0.623  Sum_probs=19.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..|++.|++|+|||+|++.+..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            3788999999999999998864

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.94  E-value=0.0037  Score=49.34  Aligned_cols=23  Identities=30%  Similarity=0.543  Sum_probs=20.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..+.|.|+||+|||||.+++...
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            36889999999999999999754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=95.94  E-value=0.0048  Score=45.21  Aligned_cols=23  Identities=22%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999998754

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=95.93  E-value=0.0046  Score=44.87  Aligned_cols=21  Identities=29%  Similarity=0.542  Sum_probs=19.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|.+.+..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            688999999999999998874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=95.93  E-value=0.005  Score=44.83  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            37899999999999999998764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=95.92  E-value=0.0051  Score=45.39  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=20.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -.|++.|++|+|||+|.+.+....
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            378999999999999999887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=95.91  E-value=0.0051  Score=44.94  Aligned_cols=23  Identities=22%  Similarity=0.436  Sum_probs=20.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            37889999999999999998864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.91  E-value=0.0036  Score=54.55  Aligned_cols=25  Identities=44%  Similarity=0.674  Sum_probs=21.3

Q ss_pred             CCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          40 KSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        40 ~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.++ |.||+|+|||||.+.|+..+
T Consensus        24 ~Gei~gLiGpNGaGKSTLlkiL~Gl~   49 (538)
T 3ozx_A           24 NNTILGVLGKNGVGKTTVLKILAGEI   49 (538)
T ss_dssp             TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence            34566 99999999999999999765

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.91  E-value=0.0022  Score=48.21  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+.|.|++|+|||||.+.++..
T Consensus        28 ~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           28 EVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             EEEEEECTTSSHHHHHTTTCCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4669999999999999988643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.90  E-value=0.0052  Score=44.66  Aligned_cols=23  Identities=30%  Similarity=0.528  Sum_probs=20.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            37899999999999999998764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.90  E-value=0.0052  Score=45.36  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            37889999999999999877754

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.90  E-value=0.0045  Score=45.59  Aligned_cols=23  Identities=22%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47889999999999999998754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=95.90  E-value=0.0051  Score=51.21  Aligned_cols=24  Identities=33%  Similarity=0.617  Sum_probs=21.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..++|+||||||||+|++.|++..
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i  198 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSI  198 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEecCCCCChhHHHHHHHHHH
Confidence            457799999999999999998865

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.88  E-value=0.0052  Score=45.45  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+++...
T Consensus         9 ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            9 KTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6889999999999999999875

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=95.86  E-value=0.0029  Score=59.07  Aligned_cols=45  Identities=16%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      +..+|.+..++.|.+.+...             .+.+-+.++|+.|+|||+||+.+++
T Consensus       128 k~~VGRe~eLeeL~elL~~~-------------d~~RVV~IvGmGGIGKTTLAk~Vy~  172 (1221)
T 1vt4_I          128 KYNVSRLQPYLKLRQALLEL-------------RPAKNVLIDGVLGSGKTWVALDVCL  172 (1221)
T ss_dssp             CSCCCCHHHHHHHHHHHHHC-------------CSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHhcc-------------CCCeEEEEEcCCCccHHHHHHHHHH
Confidence            34588888888888766210             1123455999999999999998885

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=95.85  E-value=0.0054  Score=55.98  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=18.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+++.||||||||+++..+...+
T Consensus       372 ~~~lI~GppGTGKT~ti~~~i~~l  395 (800)
T 2wjy_A          372 PLSLIQGPPGTGKTVTSATIVYHL  395 (800)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHH
Confidence            456799999999998776665443

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=95.85  E-value=0.0057  Score=44.68  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7889999999999999988753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=95.85  E-value=0.0057  Score=45.11  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            7899999999999999998764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=95.84  E-value=0.0049  Score=45.26  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            5889999999999999998753

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.84  E-value=0.0033  Score=52.90  Aligned_cols=23  Identities=39%  Similarity=0.606  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.|.||+|+|||||.++++...
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~   93 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIG   93 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            34499999999999999999743

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=95.83  E-value=0.0054  Score=44.75  Aligned_cols=22  Identities=18%  Similarity=0.378  Sum_probs=19.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..|++.|++|+|||+|.+.+..
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            4788999999999999999884

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=95.81  E-value=0.0059  Score=45.09  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            7889999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=95.81  E-value=0.0057  Score=45.30  Aligned_cols=23  Identities=30%  Similarity=0.479  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            37899999999999999998764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.80  E-value=0.0058  Score=45.16  Aligned_cols=24  Identities=25%  Similarity=0.375  Sum_probs=21.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -.|++.|++|+|||+|.+.+...-
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCcCHHHHHHHHhcCC
Confidence            378999999999999999988754

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.79  E-value=0.0051  Score=45.38  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999998753

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.78  E-value=0.0062  Score=44.96  Aligned_cols=22  Identities=23%  Similarity=0.496  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            6889999999999999888764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.77  E-value=0.0064  Score=44.27  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.+++.|++|+|||+|.+.+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999988753

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.76  E-value=0.0063  Score=45.18  Aligned_cols=23  Identities=22%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47899999999999999998864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=95.76  E-value=0.0064  Score=45.30  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=20.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            47889999999999999998754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.75  E-value=0.0066  Score=46.17  Aligned_cols=24  Identities=29%  Similarity=0.549  Sum_probs=21.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.|.+|+|||+++..++...
T Consensus        39 ~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           39 VAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHh
Confidence            357799999999999999998775

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=95.75  E-value=0.0066  Score=44.87  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|.+.+...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            6889999999999999998754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=95.74  E-value=0.012  Score=45.81  Aligned_cols=32  Identities=25%  Similarity=0.512  Sum_probs=25.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh--CCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII--NVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~--~~~~~~~~~   73 (225)
                      .+++.|.+|+||||++..++..+  +.....++.
T Consensus        16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~   49 (262)
T 1yrb_A           16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL   49 (262)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence            45589999999999999998776  555555554

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.73  E-value=0.0045  Score=50.25  Aligned_cols=30  Identities=23%  Similarity=0.458  Sum_probs=23.1

Q ss_pred             ceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          35 NIYLEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        35 ~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...++-.+|+||+|+|||++..+|.-.+
T Consensus        19 ~l~~~~g~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           19 LIGFSDRVTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             EEECCSSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EEecCCCcEEEECCCCCcHHHHHHHHHHHh
Confidence            344445545599999999999999998654

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.72  E-value=0.0098  Score=50.56  Aligned_cols=33  Identities=18%  Similarity=0.178  Sum_probs=26.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      -+++.|+||+|||++|..+|...   +.++.+++..
T Consensus       199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            46699999999999998877654   6677777664

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=95.72  E-value=0.0069  Score=44.70  Aligned_cols=23  Identities=35%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            46889999999999999999853

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=95.72  E-value=0.0065  Score=45.33  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=20.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|++.|++|+|||+|++.+...-
T Consensus        25 ~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           25 RKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCC
Confidence            378899999999999999998643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=95.72  E-value=0.0067  Score=45.26  Aligned_cols=24  Identities=21%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|++.|++|+|||+|.+.+....
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            378899999999999999987643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.71  E-value=0.0069  Score=44.85  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            37899999999999999998864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=95.71  E-value=0.0069  Score=44.62  Aligned_cols=23  Identities=26%  Similarity=0.546  Sum_probs=20.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            47899999999999999999764

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=95.71  E-value=0.0057  Score=50.66  Aligned_cols=28  Identities=25%  Similarity=0.471  Sum_probs=22.4

Q ss_pred             ceeeeCCcEEEEcCCCCcHHHHHHHHHH
Q psy5910          35 NIYLEKSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        35 ~~~~~~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+...++-.+|+||+|+|||++..+|+-
T Consensus        20 ~i~f~~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           20 RIKFEKGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEECCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             EEecCCCeEEEECCCCCCHHHHHHHHHH
Confidence            3444455566999999999999999986

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=95.71  E-value=0.0069  Score=45.12  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|.+.+...
T Consensus        29 ~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           29 YKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            47889999999999999998753

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.70  E-value=0.0049  Score=49.99  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -++|+|++|+||||+.+.+....
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEEecCCCCHHHHHHHHHhhc
Confidence            45599999999999999999764

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.70  E-value=0.0067  Score=45.58  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|++.+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            37889999999999999988764

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=95.69  E-value=0.15  Score=41.65  Aligned_cols=19  Identities=26%  Similarity=0.384  Sum_probs=16.0

Q ss_pred             CcEEEEcCCCCcHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKT   59 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~   59 (225)
                      .++++.+|+|+|||..+-.
T Consensus        46 ~~~lv~a~TGsGKT~~~~~   64 (391)
T 1xti_A           46 MDVLCQAKSGMGKTAVFVL   64 (391)
T ss_dssp             CCEEEECSSCSSHHHHHHH
T ss_pred             CcEEEECCCCCcHHHHHHH
Confidence            5799999999999986543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.68  E-value=0.0051  Score=44.73  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.+++.|++|+|||+|.+.+...
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36889999999999999998864

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.68  E-value=0.0069  Score=45.63  Aligned_cols=23  Identities=39%  Similarity=0.723  Sum_probs=20.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|++.|++|+|||+|++.+...
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36889999999999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=95.67  E-value=0.0065  Score=46.86  Aligned_cols=23  Identities=35%  Similarity=0.488  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|+|+|++|+|||+|.+++...
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~   52 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGR   52 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHcCC
Confidence            47889999999999999998864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=95.66  E-value=0.007  Score=45.26  Aligned_cols=22  Identities=27%  Similarity=0.613  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=95.66  E-value=0.0068  Score=45.16  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|.+.+...
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999988753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.64  E-value=0.0079  Score=45.27  Aligned_cols=25  Identities=32%  Similarity=0.418  Sum_probs=20.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...|++.|++|+|||+|...+....
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3478899999999999999988643

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.62  E-value=0.014  Score=43.81  Aligned_cols=29  Identities=28%  Similarity=0.473  Sum_probs=23.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEe
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVV   71 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~   71 (225)
                      |.|-|+-||||||.++.+++.+   |.+++..
T Consensus         3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t   34 (197)
T 3hjn_A            3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK   34 (197)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            4478999999999999999887   5565544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.61  E-value=0.0075  Score=44.63  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~   31 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKG   31 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCcHHHHHHHHHcC
Confidence            37889999999999999999763

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.61  E-value=0.0067  Score=44.55  Aligned_cols=23  Identities=43%  Similarity=0.593  Sum_probs=19.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..+++.|++|+|||+|.+.+...
T Consensus        17 ~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           17 VRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46889999999999999988753

>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.0078  Score=54.97  Aligned_cols=21  Identities=38%  Similarity=0.616  Sum_probs=16.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia   61 (225)
                      +.+++.||||||||+++..+.
T Consensus       376 ~~~lI~GppGTGKT~~i~~~i  396 (802)
T 2xzl_A          376 PLSLIQGPPGTGKTVTSATIV  396 (802)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHH
Confidence            356799999999998765444

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.59  E-value=0.008  Score=45.05  Aligned_cols=23  Identities=30%  Similarity=0.588  Sum_probs=20.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|+++|++|+|||+|...+...
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            47889999999999999998753

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.57  E-value=0.0088  Score=48.97  Aligned_cols=23  Identities=17%  Similarity=0.527  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+.|+||+||||+++.++..+
T Consensus        58 ~i~i~G~~g~GKSTl~~~l~~~~   80 (341)
T 2p67_A           58 RLGVTGTPGAGKSTFLEAFGMLL   80 (341)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            45599999999999999998765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.57  E-value=0.008  Score=49.40  Aligned_cols=23  Identities=30%  Similarity=0.702  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.|.|+||+|||||.+++...+
T Consensus        76 ~v~lvG~pgaGKSTLln~L~~~~   98 (349)
T 2www_A           76 RVGLSGPPGAGKSTFIEYFGKML   98 (349)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            45599999999999999998754

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.57  E-value=0.0089  Score=45.29  Aligned_cols=28  Identities=29%  Similarity=0.592  Sum_probs=22.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh--CCCeEE
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII--NVPIIV   70 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~--~~~~~~   70 (225)
                      |.|-|+.|+||||.++.+++.+  +.+++.
T Consensus         5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~   34 (205)
T 4hlc_A            5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIM   34 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHCCCCEEE
Confidence            4488999999999999999988  444443

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=95.57  E-value=0.0068  Score=55.26  Aligned_cols=32  Identities=22%  Similarity=0.401  Sum_probs=23.9

Q ss_pred             ecccceeeeCCc-EEEEcCCCCcHHHHHHHHHHH
Q psy5910          31 LKSKNIYLEKSN-ILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        31 ~~~~~~~~~~~~-vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..+.++. +.+. ++|+||+|+||||+.|.++..
T Consensus       598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            4445555 3444 459999999999999999865

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.55  E-value=0.0075  Score=44.20  Aligned_cols=22  Identities=27%  Similarity=0.516  Sum_probs=19.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..+++.|++|+|||+|.+.+..
T Consensus        19 ~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           19 LRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4788999999999999998875

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.54  E-value=0.005  Score=44.94  Aligned_cols=21  Identities=38%  Similarity=0.619  Sum_probs=18.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia   61 (225)
                      ..|++.|++|+|||+|.+.+.
T Consensus        19 ~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           19 LRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             EEEEEEEETTSSHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHh
Confidence            478899999999999998876

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=95.52  E-value=0.071  Score=41.05  Aligned_cols=30  Identities=17%  Similarity=0.352  Sum_probs=20.0

Q ss_pred             EEEcCCCCcHHHHHH-HHHHHh--CCCeEEecc
Q psy5910          44 LLVGPTGCGKTLMVK-TLAKII--NVPIIVVDA   73 (225)
Q Consensus        44 Ll~Gp~GtGKT~la~-~ia~~~--~~~~~~~~~   73 (225)
                      +++||.|+||||.+- .+.+..  +..++.+..
T Consensus        23 v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp   55 (234)
T 2orv_A           23 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY   55 (234)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             EEECCCCCcHHHHHHHHHHHHHHCCCeEEEEee
Confidence            388999999997554 443333  566666653

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.51  E-value=0.0082  Score=44.15  Aligned_cols=22  Identities=23%  Similarity=0.498  Sum_probs=19.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..|++.|++|+|||+|.+.+..
T Consensus        17 ~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           17 HKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4788999999999999999884

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.51  E-value=0.0065  Score=44.98  Aligned_cols=23  Identities=22%  Similarity=0.472  Sum_probs=19.9

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHH
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ...|++.|++|+|||+|.+.+..
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            34789999999999999988864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	225
d1um8a_	364	c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 2	2e-46
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	2e-43
d1g41a_	443	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	7e-06
d1ofha_	309	c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId	9e-39
d1ixza_	247	c.37.1.20 (A:) AAA domain of cell division protein	3e-16
d1r6bx3	315	c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, A	9e-15
d1lv7a_	256	c.37.1.20 (A:) AAA domain of cell division protein	2e-14
d1qvra3	315	c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus	2e-13
d2fnaa2	283	c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfo	2e-11
d1w44a_	321	c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [Ta	1e-10
d1svma_	362	c.37.1.20 (A:) Papillomavirus large T antigen heli	6e-10
d1ixsb2	239	c.37.1.20 (B:4-242) Holliday junction helicase Ruv	2e-08
d1gvnb_	273	c.37.1.21 (B:) Plasmid maintenance system epsilon/	1e-07
d1r7ra3	265	c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p	3e-07
d1g8pa_	333	c.37.1.20 (A:) ATPase subunit of magnesium chelata	4e-06
d1in4a2	238	c.37.1.20 (A:17-254) Holliday junction helicase Ru	2e-05
d1qvra2	387	c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus	3e-05
d1d2na_	246	c.37.1.20 (A:) Hexamerization domain of N-ethylmal	4e-05
d1e32a2	258	c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p	1e-04
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	2e-04
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	3e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	4e-04
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	4e-04
d1sxjd2	237	c.37.1.20 (D:26-262) Replication factor C2 {Baker'	0.001
d1viaa_	161	c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobact	0.004
d1e6ca_	170	c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr	0.004
d2iyva1	165	c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycoba	0.004

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

 Score =  154 bits (391), Expect = 2e-46
 Identities = 108/245 (44%), Positives = 151/245 (61%), Gaps = 23/245 (9%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLK----------------SKNIYLEKSNILL 45
            LD ++IGQ + KK+ SV VYNHYKRL   +                 + + L KSNILL
Sbjct: 14  VLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILL 73

Query: 46  VGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAE 105
           +GPTG GKTLM +TLAK +++PI + DATS TEAGYVG+DVE+I+ +LL   D++V+ A+
Sbjct: 74  IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQ 133

Query: 106 QSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164
           + I++IDEIDKIS+ ++  S  +DVSGEGVQQ+LLK++EG  ++I     +K+P      
Sbjct: 134 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEG--NF 191

Query: 165 FNIDTTNILFIAGGAFSGIENFIINRINQ----ETNFLEKLNNNYNLICETNTEDLINFG 220
             IDT++ILFI  GAF G+   I  R  Q     T           ++    T DL+ +G
Sbjct: 192 IQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 251

Query: 221 IIPVL 225
           +IP L
Sbjct: 252 LIPEL 256

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score =  149 bits (377), Expect = 2e-43
 Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 17/214 (7%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ + K+ V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 11  ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 70

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIY----------- 110
           K+ N P I V+AT FTE GYVG +V+SII+ L       V   E +              
Sbjct: 71  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERI 130

Query: 111 IDEIDKISKKTDV-VSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFN--- 166
           +D +   +K     V   D      Q    KL EG         +               
Sbjct: 131 LDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPP 190

Query: 167 --IDTTNILFIAGGAFSGIENFIINRINQETNFL 198
              + TN L          +        ++    
Sbjct: 191 GMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKA 224

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 443

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score = 43.6 bits (102), Expect = 7e-06
 Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 19/98 (19%)

Query: 105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164
           +  I++IDEIDKI KK +  SG DVS EGVQ+ LL L+EG     ++++ K         
Sbjct: 249 QNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEG-----STVSTKHGM------ 296

Query: 165 FNIDTTNILFIAGGAF-----SGIENFIINRINQETNF 197
             + T +ILFIA GAF     S +   +  R+      
Sbjct: 297 --VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 332

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} Length = 309

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

 Score =  134 bits (337), Expect = 9e-39
 Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 15/181 (8%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           ELD+HIIGQ + K+ V++ + N ++R+ L +     +   NIL++GPTG GKT + + LA
Sbjct: 11  ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 70

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ-SIIYIDEIDKISKK 120
           K+ N P I V+AT FTE GYVG +V+SII+ L       ++  EQ  I++IDEIDKI KK
Sbjct: 71  KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 130

Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
            +     DVS EGVQ+ LL L+EG  +S       K+         + T +ILFIA GAF
Sbjct: 131 GEYSGA-DVSREGVQRDLLPLVEGSTVST------KHG-------MVKTDHILFIASGAF 176

Query: 181 S 181
            
Sbjct: 177 Q 177

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

 Score = 72.6 bits (178), Expect = 3e-16
 Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 38/174 (21%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLE-----KSNILLVGPTGCGKTLMVKTLA 61
           + G  E K+ +        + +  LK+ + + E        +LLVGP G GKT + + +A
Sbjct: 11  VAGAEEAKEELK-------EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 63

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ---SIIYIDEIDKI- 117
               VP I    + F E  +VG    + ++ L        E A++    I++IDEID + 
Sbjct: 64  GEARVPFITASGSDFVE-MFVGVG-AARVRDLF-------ETAKRHAPCIVFIDEIDAVG 114

Query: 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTN 171
            K+   V G +   E     LL  ++G               ++  +  +  TN
Sbjct: 115 RKRGSGVGGGNDEREQTLNQLLVEMDGFE-------------KDTAIVVMAATN 155

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

 Score = 69.9 bits (170), Expect = 9e-15
 Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 17/173 (9%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
            L   + GQ +  + ++  +      L      + +    + L  GPTG GKT +   L+
Sbjct: 19  RLKMLVFGQDKAIEALTEAIKMARAGL-----GHEHKPVGSFLFAGPTGVGKTEVTVQLS 73

Query: 62  KIINVPIIVVDATSFTE-----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIY 110
           K + + ++  D + + E            GYVG D   ++   + +  + V L ++    
Sbjct: 74  KALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 133

Query: 111 IDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163
             ++  I  +  + +G      G +     ++  +  +      ++       
Sbjct: 134 HPDVFNILLQV-MDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIH 185

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} Length = 256

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

 Score = 68.3 bits (167), Expect = 2e-14
 Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 38/174 (21%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLE-----KSNILLVGPTGCGKTLMVKTLA 61
           + G  E K+ V+       + +  L+  + + +        +L+VGP G GKTL+ K +A
Sbjct: 14  VAGCDEAKEEVA-------ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA 66

Query: 62  KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ---SIIYIDEIDKI- 117
               VP   +  + F E  +VG    S ++ +        E A++    II+IDEID + 
Sbjct: 67  GEAKVPFFTISGSDFVE-MFVGVG-ASRVRDMF-------EQAKKAAPCIIFIDEIDAVG 117

Query: 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTN 171
            ++   + G     E     +L  ++G                N  +  I  TN
Sbjct: 118 RQRGAGLGGGHDEREQTLNQMLVEMDGFE-------------GNEGIIVIAATN 158

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 26/133 (19%)

Query: 2   ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
           EL + ++GQ E  + V+  +      L     K+      + L +GPTG GKT + KTLA
Sbjct: 20  ELHKRVVGQDEAIRAVADAIRRARAGL-----KDPNRPIGSFLFLGPTGVGKTELAKTLA 74

Query: 62  KII---NVPIIVVDATSFTE-----------AGYVGDDVESIIQKLLHECDYDVELAEQS 107
             +      +I +D T + E            GYVG +    + + +    Y       S
Sbjct: 75  ATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPY-------S 127

Query: 108 IIYIDEIDKISKK 120
           +I  DEI+K    
Sbjct: 128 VILFDEIEKAHPD 140

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} Length = 283

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 59.8 bits (143), Expect = 2e-11
 Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 38  LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
           L     L++G    GK+ ++K     +N+P I +D   F E  Y+    +  + +L  E 
Sbjct: 27  LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI--SYKDFLLELQKEI 84

Query: 98  DYDVELAEQSIIYIDEIDKISKKTDVVSGK-DVSGEGVQQSLLKL 141
           +  V+     +  +  I  I    + +    +        +LL+ 
Sbjct: 85  NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLES 129

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} Length = 321

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

 Score = 57.7 bits (139), Expect = 1e-10
 Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 24/134 (17%)

Query: 40  KSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
              +++ G    GKT +V  L + +        V        GY  D     +  +    
Sbjct: 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNTDF-NVFVDDIAR-- 178

Query: 98  DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157
                + +  +I ID +  +       +       G                  L++   
Sbjct: 179 ----AMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFD--------------LLSDIGA 220

Query: 158 PSQNPQVFNIDTTN 171
            + +     I + N
Sbjct: 221 MAASRGCVVIASLN 234

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

 Score = 55.8 bits (134), Expect = 6e-10
 Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 40  KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDY 99
           K   L  GP   GKT +   L ++     + V+         +G  ++  +  +  +   
Sbjct: 154 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLV-VFEDVKG 212

Query: 100 DVELAEQ--SIIYIDEIDKISKKTD 122
               +    S   I+ +D +    D
Sbjct: 213 TGGESRDLPSGQGINNLDNLRDYLD 237

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

 Score = 50.7 bits (120), Expect = 2e-08
 Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 22/114 (19%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
            IGQ   K+ + V +     R   L+         ++LL GP G GKT +   +A  + V
Sbjct: 11  YIGQERLKQKLRVYLEAAKARKEPLE---------HLLLFGPPGLGKTTLAHVIAHELGV 61

Query: 67  PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
            + V    +  + G +   + + ++             E  I++IDEI ++S++
Sbjct: 62  NLRVTSGPAIEKPGDLAAILANSLE-------------EGDILFIDEIHRLSRQ 102

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 15/153 (9%), Positives = 40/153 (26%), Gaps = 7/153 (4%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
            LL G  G GKT +   + +     +IV+D  +F +      + + +++    +    V 
Sbjct: 35  FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP---NFDELVKLYEKDVVKHVT 91

Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162
                +          +  ++V         V      +++          +    +   
Sbjct: 92  PYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYET----KMYVMAVPK 147

Query: 163 QVFNIDTTNILFIAGGAFSGIENFIINRINQET 195
               + T                    + +   
Sbjct: 148 INSYLGTIERYETMYADDPMTARATPKQAHDIV 180

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 27/219 (12%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
           I G  + K+ +   V    +         +   K  +L  GP GCGKTL+ K +A     
Sbjct: 9   IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG-VLFYGPPGCGKTLLAKAIANECQA 67

Query: 67  PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI-SKKTDVVS 125
             I +         + G+      +  + E       A   +++ DE+D I   +   + 
Sbjct: 68  NFISIKGPELLT-MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 121

Query: 126 GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNIL------FIAGGA 179
               + + V   +L  ++G+             S    VF I  TN         +  G 
Sbjct: 122 DGGGAADRVINQILTEMDGM-------------STKKNVFIIGATNRPDIIDPAILRPGR 168

Query: 180 FSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLIN 218
              +    +         L+       +  + + E L  
Sbjct: 169 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 207

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} Length = 333

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

 Score = 44.5 bits (104), Expect = 4e-06
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 21/74 (28%)

Query: 7  IIGQHETKK---IVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKI 63
          I+GQ + K    + +V                       +L+ G  G GK+  V+ LA +
Sbjct: 9  IVGQEDMKLALLLTAVDPGIG-----------------GVLVFGDRGTGKSTAVRALAAL 51

Query: 64 INVPIIVVDATSFT 77
          +   I  V+    +
Sbjct: 52 LP-EIEAVEGCPVS 64

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 15/121 (12%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
            IGQ   KK +S+ +     R  +L          ++LL GP G GKT +   +A  +  
Sbjct: 11  FIGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIASELQT 61

Query: 67  PIIVVDATSFTEAGYVGDDVE------SIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
            I V       + G +   +        +    +H  +  VE    S I   +ID +  K
Sbjct: 62  NIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGK 121

Query: 121 T 121
            
Sbjct: 122 G 122

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

 Score = 42.0 bits (98), Expect = 3e-05
 Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 11/85 (12%)

Query: 39  EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF------TEAGYVGDDVESI 89
            K+N +L+G  G GKT +V+ LA+ I   +VP  +              AG         
Sbjct: 42  TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA--KYRGEF 99

Query: 90  IQKLLHECDYDVELAEQSIIYIDEI 114
            ++L       V+   + I++IDE+
Sbjct: 100 EERLKAVIQEVVQSQGEVILFIDEL 124

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 246

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 41.1 bits (95), Expect = 4e-05
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
           +LL GP   GKT +   +A+  N P I + +      G+        ++K+  +      
Sbjct: 43  VLLEGPPHSGKTALAAKIAEESNFPFIKICS-PDKMIGFSETAKCQAMKKIFDDAYK--- 98

Query: 103 LAEQSIIYIDEIDKISKK 120
            ++ S + +D+I+++   
Sbjct: 99  -SQLSCVVVDDIERLLDY 115

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 7/120 (5%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
           + G  +    +   V    +   L K+  +   +  ILL GP G GKTL+ + +A     
Sbjct: 6   VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG-ILLYGPPGTGKTLIARAVANETGA 64

Query: 67  PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSG 126
              +++          G+   ++ +               +II+IDE+D I+ K +   G
Sbjct: 65  FFFLINGPEIMS-KLAGESESNLRKAFEEAEKNA-----PAIIFIDELDAIAPKREKTHG 118

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (88), Expect = 2e-04
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81
          EK NI LVGP G GK+ + + LA+ +N+     D       G 
Sbjct: 1  EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA 43

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 22/178 (12%), Positives = 42/178 (23%), Gaps = 13/178 (7%)

Query: 42  NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
            + ++G    GK+++V  LA + N          F      GD+                
Sbjct: 9   TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQ 68

Query: 102 ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161
              + ++ +  +I  I                   +    I+    +   L         
Sbjct: 69  RYIDYAVRHSHKIAFIDTDFIT-------------TQAFCIQYEGKAHPFLDSMIKEYPF 115

Query: 162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINF 219
                +         G    G +             L+K    Y  I   +  D  N 
Sbjct: 116 DVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQ 173

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 37.7 bits (86), Expect = 4e-04
 Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 43  ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY---VGDDVESIIQKLLHECDY 99
           I+L G +  GK+ +V+ L  ++  P +     S  EA        +              
Sbjct: 6   IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65

Query: 100 DVELAEQSIIY 110
               A +    
Sbjct: 66  PEFRALEGAWA 76

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 37.6 bits (86), Expect = 4e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA 79
          +LL G  G GK+ + + LA +  VP +   +      
Sbjct: 7  LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY 43

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.6 bits (83), Expect = 0.001
 Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 24/123 (19%)

Query: 7   IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
           +  Q     ++             LKS N+     ++L  GP G GKT  +  L K +  
Sbjct: 14  VTAQDHAVTVLKK----------TLKSANL----PHMLFYGPPGTGKTSTILALTKELYG 59

Query: 67  P------IIVVDATSFTEAGYVGDDVESIIQ----KLLHECDYDVELAEQSIIYIDEIDK 116
           P      I+ ++A+       V + V++  +    K       +       II +DE D 
Sbjct: 60  PDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADS 119

Query: 117 ISK 119
           ++ 
Sbjct: 120 MTA 122

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72
          NI+ +G  G GK+ + + LAK +++  +  D
Sbjct: 2  NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 32

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 40 KSNILLVGPTGCGKTLMVKTLAKIINVPII 69
             I +VG  GCG T + + LA+ +    +
Sbjct: 2  TEPIFMVGARGCGMTTVGRELARALGYEFV 31

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 34.6 bits (78), Expect = 0.004
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69
            +LVG  G GK+ + + LAK + V ++
Sbjct: 3  KAVLVGLPGSGKSTIGRRLAKALGVGLL 30

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	225
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	99.96
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	99.96
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	99.96
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	99.96
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.95
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	99.94
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	99.91
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	99.9
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	99.87
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.86
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	99.84
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.84
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	99.79
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	99.74
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	99.69
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	99.68
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	99.67
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	99.65
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	99.61
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	99.58
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	99.56
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	99.54
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	99.54
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	99.53
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	99.48
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	99.4
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	99.4
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	99.37
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	99.31
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	99.23
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	99.11
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.02
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	98.8
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.8
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.74
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.55
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.54
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.5
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	98.49
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.45
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	98.42
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	98.38
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	98.32
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.29
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	98.29
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.26
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.26
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.26
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.24
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.24
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.23
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.22
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.21
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.18
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.18
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.18
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.17
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.16
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	98.16
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.13
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.12
d1okkd2	207	GTPase domain of the signal recognition particle r	98.12
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	98.12
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.11
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	98.1
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.08
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.06
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.06
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.05
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.04
d1tuea_	205	Replication protein E1 helicase domain {Human papi	98.04
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.04
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.04
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.02
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.02
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.01
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.01
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.0
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.97
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.96
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.96
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.96
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.94
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.92
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.89
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.88
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.87
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.86
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.86
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.84
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.8
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.8
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.78
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.77
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.73
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	97.66
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.59
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.54
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.52
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.44
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.43
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	97.4
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.38
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.38
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.37
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.36
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.34
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.33
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.28
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.22
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	97.2
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.17
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	97.14
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.11
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.09
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.06
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.03
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.02
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.01
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.99
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.98
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.97
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.91
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.91
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.9
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.86
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.84
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.83
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.82
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.81
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.78
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.78
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.76
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.74
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.73
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.7
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.68
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.68
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.64
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.63
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.58
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	96.57
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	96.56
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.53
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.52
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.51
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.5
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.49
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	96.47
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.46
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.43
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.42
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.38
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.33
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.33
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	96.33
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.29
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.26
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.25
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.21
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.21
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.18
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.17
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.16
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.16
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.14
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.12
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.11
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.1
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.09
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.07
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.07
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.07
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.06
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.04
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.03
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.02
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.01
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.01
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.01
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.99
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.99
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.98
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.93
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	95.91
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.87
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.85
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.85
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.85
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.83
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.81
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.78
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.78
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.78
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	95.77
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	95.76
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.75
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.7
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.65
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	95.65
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.59
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.55
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.54
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.53
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.48
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.42
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	95.36
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	95.34
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	95.2
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	95.16
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	95.14
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	95.14
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.13
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.1
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	95.01
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.01
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.93
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	94.88
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.86
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	94.8
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.5
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.49
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.48
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	94.15
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.1
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.89
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.85
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.82
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	93.79
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.56
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.5
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	93.39
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.31
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.22
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	93.15
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.12
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	93.08
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.69
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	92.44
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.33
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	92.09
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	91.89
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	91.66
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	91.64
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	91.61
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.57
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	91.56
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	91.54
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	91.49
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	91.08
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	90.81
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	90.77
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	90.74
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	90.4
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.99
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	89.95
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.44
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	89.29
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	88.92
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	88.19
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	88.12
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	87.14
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	87.01
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	86.38
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	86.36
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	86.19
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	85.38
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	83.86
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	83.54
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	83.52
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	83.46
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	81.21
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	80.57
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	80.48
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	80.45
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	80.27
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	80.11

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=6.6e-31  Score=207.41  Aligned_cols=172  Identities=23%  Similarity=0.340  Sum_probs=135.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|+++++++|.+.+.+ +.+...++..+... ++++||+||||||||++|+++|++++.+++.++++.+.+ .|.|+
T Consensus        12 ~Di~Gl~~~k~~l~e~v~~-~~~~~~~~~~g~~~-~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l~~-~~~g~   88 (256)
T d1lv7a_          12 ADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKI-PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVE-MFVGV   88 (256)
T ss_dssp             GGSCSCHHHHHHTHHHHHH-HHCGGGC-----CC-CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTT-SCCCC
T ss_pred             HHHhchHHHHHHHHHHHHH-HHCHHHHHHcCCCC-CCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHhhh-cchhH
Confidence            4679999999999887643 44444455555543 458999999999999999999999999999999999985 69998


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|+.+    ....|+||||||+|.++..++... +......++.+.|+..||+...             +.+
T Consensus        89 ~-~~~l~~~f~~A----~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~-------------~~~  150 (256)
T d1lv7a_          89 G-ASRVRDMFEQA----KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG-------------NEG  150 (256)
T ss_dssp             C-HHHHHHHHHHH----HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS-------------SSC
T ss_pred             H-HHHHHHHHHHH----HHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC-------------CCC
Confidence            8 56678888776    567899999999999998875544 2334445677889999986431             122


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.||++++|  ||+..|.++.|+.++
T Consensus       151 v~vIatTn~-------~~~ld~al~R~gRfd~~i~i~~P~~~~  186 (256)
T d1lv7a_         151 IIVIAATNR-------PDVLDPALLRPGRFDRQVVVGLPDVRG  186 (256)
T ss_dssp             EEEEEEESC-------TTTSCGGGGSTTSSCEEEECCCCCHHH
T ss_pred             EEEEEeCCC-------cccCCHhHcCCCCCCEEEECCCcCHHH
Confidence            899999999       7799999998  999999999999866

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=99.96  E-value=2.5e-31  Score=219.54  Aligned_cols=222  Identities=49%  Similarity=0.806  Sum_probs=154.9

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccc----------------eeeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKN----------------IYLEKSNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~----------------~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +|+++|+||++||+.+..+++++|++.+......                ...++.++||.||+|||||.+||++|+.++
T Consensus        14 ~L~~~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          14 VLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HhCCeecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcc
Confidence            5899999999999999999988777643221111                134677999999999999999999999999


Q ss_pred             CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhc
Q psy5910          66 VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        66 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~  144 (225)
                      .+++.++++.+.+.+|.|.+....++.+...+.+.++..+.+++++||++++.+...... ..+.+...+++.|++.||+
T Consensus        94 ~~~ir~D~s~~~e~gyvg~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~~V~~~lLqild~  173 (364)
T d1um8a_          94 IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEG  173 (364)
T ss_dssp             CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHC
T ss_pred             cceeehhhhhcccchhhHhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccchHHHHhhhhhhcC
Confidence            999999999999999999998999999988888888888999999999999987654333 3455667799999999998


Q ss_pred             CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc---chhcccCChhHHHHcc
Q psy5910         145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN---YNLICETNTEDLINFG  220 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~---~~l~~~~~~~~l~~~~  220 (225)
                      ....++...++..+..+  .+++.|+|.++++.++++.++.....+.... +.|.......   ..+.+.+.++++.+++
T Consensus       174 ~~~~~~~~~gr~~~~~~--~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (364)
T d1um8a_         174 SLVNIPPKGGRKHPEGN--FIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG  251 (364)
T ss_dssp             CEEC-----------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTT
T ss_pred             ceeccCCCCCCcCCcce--eEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhccccHHHHhhhh
Confidence            77777777777777777  8999999999999999999998888876555 6666554433   5556667777777888


Q ss_pred             CCCCC
Q psy5910         221 IIPVL  225 (225)
Q Consensus       221 ~~~~~  225 (225)
                      ++|||
T Consensus       252 f~PEf  256 (364)
T d1um8a_         252 LIPEL  256 (364)
T ss_dssp             CCHHH
T ss_pred             hHHHH
Confidence            88775

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.96  E-value=2.1e-31  Score=216.26  Aligned_cols=189  Identities=41%  Similarity=0.635  Sum_probs=146.3

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      +|+++|+||++||+.|..++++++++.......+...+++++||+||||||||++|+++|+.++.+++.++++.+.+.++
T Consensus        11 ~L~~~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~~~~~~   90 (309)
T d1ofha_          11 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY   90 (309)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCS
T ss_pred             HhcCcccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccchhccccccccccee
Confidence            47889999999999999988666555433332233346689999999999999999999999999999999999976666


Q ss_pred             cCCcHHHHHHHHHHhcchhhh-hhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCC
Q psy5910          82 VGDDVESIIQKLLHECDYDVE-LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQ  160 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~  160 (225)
                      .+...+...+.+|..+.+... ..+++||||||+|++++++.... .+...+.+++.|+.++|+.....           
T Consensus        91 ~~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~-~~~~~~gv~~~LL~~~dg~~~~~-----------  158 (309)
T d1ofha_          91 VGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLLPLVEGSTVST-----------  158 (309)
T ss_dssp             GGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCS-SHHHHHHHHHHHHHHHHCCEEEE-----------
T ss_pred             EeeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcc-cchhhhHHHHHhhHHhcCCEEec-----------
Confidence            555557778888888765433 23689999999999998764332 23334557889999999754321           


Q ss_pred             CCceeEEecCcceeeccCc-----cccHHHHHHhhcccccccccccccc
Q psy5910         161 NPQVFNIDTTNILFIAGGA-----FSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       161 ~~~~~~i~ttn~~~i~~~~-----~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .  ..+|.++|++|+++++     +..++++++.||+..+.++.|+.+.
T Consensus       159 ~--~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~  205 (309)
T d1ofha_         159 K--HGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAAD  205 (309)
T ss_dssp             T--TEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHH
T ss_pred             C--CeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHH
Confidence            1  4567899999998754     5789999999999999999998865

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=7.5e-31  Score=206.25  Aligned_cols=171  Identities=22%  Similarity=0.341  Sum_probs=131.1

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .|+|++++|++|.+.+.. +.++..+...+... ++++||+||||||||++|+++|++++.+++.++++.+.+ +|.|+.
T Consensus        10 di~G~~~~k~~l~~~i~~-l~~~~~~~~~g~~~-~~giLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~-~~~g~~   86 (247)
T d1ixza_          10 DVAGAEEAKEELKEIVEF-LKNPSRFHEMGARI-PKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-MFVGVG   86 (247)
T ss_dssp             GCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCC-CSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH-SCTTHH
T ss_pred             HHccHHHHHHHHHHHHHH-HHCHHHHHHcCCCC-CceEEEecCCCCChhHHHHHHHHHcCCCEEEEEhHHhhh-ccccHH
Confidence            589999999999876533 44444455555533 458999999999999999999999999999999999875 688876


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccC-CCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                       .+.+..+|+.+    ...+|+||||||+|.+..+++... +.+.....+.+.|+..|++...             +.++
T Consensus        87 -~~~l~~~f~~a----~~~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~-------------~~~v  148 (247)
T d1ixza_          87 -AARVRDLFETA----KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK-------------DTAI  148 (247)
T ss_dssp             -HHHHHHHHHHH----TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT-------------TCCE
T ss_pred             -HHHHHHHHHHH----HHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCC-------------CCCE
Confidence             56677888776    456899999999999998775443 2333445678889999986421             1228


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.+|++++|  ||+..|.|+.|+.++
T Consensus       149 ivi~tTn~-------~~~ld~al~R~~Rf~~~i~~~~P~~~e  183 (247)
T d1ixza_         149 VVMAATNR-------PDILDPALLRPGRFDRQIAIDAPDVKG  183 (247)
T ss_dssp             EEEEEESC-------GGGSCGGGGSTTSSCEEEECCSCCHHH
T ss_pred             EEEEeCCC-------ccccCHhHcCCCCCcEEEEECCcCHHH
Confidence            99999999       6799999997  999999999998876

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.8e-29  Score=199.94  Aligned_cols=171  Identities=23%  Similarity=0.334  Sum_probs=139.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|++++|+.|.+.+..++.++..+...++.. ++++|||||||||||++++++|++++.+++.++++.+.. .|.|.
T Consensus         4 ~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~-~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~~~~l~~-~~~g~   81 (258)
T d1e32a2           4 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKP-PRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS-KLAGE   81 (258)
T ss_dssp             GGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCC-CCEEEEECCTTSSHHHHHHHHHHHTTCEEEEECHHHHTT-SCTTH
T ss_pred             hhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCC-CceeEEecCCCCCchHHHHHHHHHhCCeEEEEEchhhcc-ccccc
Confidence            3489999999999999877777777777667654 458999999999999999999999999999999998875 57776


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCce
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV  164 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~  164 (225)
                      . ...++.+|..+    ...+|+||||||+|.+..+++...  ......+.+.++..++...           ...  ++
T Consensus        82 ~-~~~l~~~f~~A----~~~~p~il~iDeid~l~~~r~~~~--~~~~~~~~~~~~~~~~~~~-----------~~~--~v  141 (258)
T d1e32a2          82 S-ESNLRKAFEEA----EKNAPAIIFIDELDAIAPKREKTH--GEVERRIVSQLLTLMDGLK-----------QRA--HV  141 (258)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEESSGGGTCCHHHHCC--CTTHHHHHHHHHHHHHTCC-----------CSS--CE
T ss_pred             H-HHHHHHHHHHH----HhcCCeEEEehhhhhhccCCCCCC--CchHHHHHHHhcccccccc-----------ccC--Cc
Confidence            6 55677777776    567899999999999998876532  3344557777777776532           122  28


Q ss_pred             eEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         165 FNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       165 ~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|+|||.       ++.+|++++|  ||+..|.++.|+.++
T Consensus       142 lvi~tTn~-------~~~ld~al~r~gRfd~~i~~~~P~~~~  176 (258)
T d1e32a2         142 IVMAATNR-------PNSIDPALRRFGRFDREVDIGIPDATG  176 (258)
T ss_dssp             EEEEEESC-------GGGSCGGGTSTTSSCEEEECCCCCHHH
T ss_pred             cEEEeCCC-------ccccchhhhhcccccceeECCCCCHHH
Confidence            99999999       7799999999  999999999999977

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=6e-29  Score=197.55  Aligned_cols=173  Identities=22%  Similarity=0.344  Sum_probs=134.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+|+++++++|.+.+..++.+++.+...+.. +.+++||+||||||||++|+++|+.++.+++.++++++.. .|.|.
T Consensus         7 ~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~-~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~~~~l~~-~~~~~   84 (265)
T d1r7ra3           7 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMT-PSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-MWFGE   84 (265)
T ss_dssp             SSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCC-CCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEECHHHHHT-SCTTT
T ss_pred             HHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCC-CCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEEHHHhhh-ccccc
Confidence            348999999999999887776666566555554 3458999999999999999999999999999999988864 57776


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCC-CCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCc
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSG-KDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ  163 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~-~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~  163 (225)
                      . ...++.+|..+    ....|+|+||||+|.+...++...+ .....+++.+.|+..|++..           ...+  
T Consensus        85 ~-~~~l~~~f~~A----~~~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~--  146 (265)
T d1r7ra3          85 S-EANVREIFDKA----RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKN--  146 (265)
T ss_dssp             H-HHHHHHHHHHH----HHTCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC-----------------C--
T ss_pred             h-HHHHHHHHHHH----HhcCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcC-----------CCCC--
Confidence            5 66677888776    5568999999999999987654332 12223345677777776532           1122  


Q ss_pred             eeEEecCcceeeccCccccHHHHHHh--hcccccccccccccc
Q psy5910         164 VFNIDTTNILFIAGGAFSGIENFIIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       164 ~~~i~ttn~~~i~~~~~~~l~~al~~--Rf~~~i~~~~~~~~~  204 (225)
                      +++|+|||.       ++.||++++|  ||+..|.++.|+.++
T Consensus       147 v~vi~ttn~-------~~~ld~al~r~gRf~~~i~~~~p~~~~  182 (265)
T d1r7ra3         147 VFIIGATNR-------PDIIDPAILRPGRLDQLIYIPLPDEKS  182 (265)
T ss_dssp             CEEEECCBS-------CTTTSCGGGSSTTSEEEEECCCCCCHH
T ss_pred             EEEEEeCCC-------chhCCHHHhCCCCccEEEEecchHHHH
Confidence            899999999       6799999998  999999999999977

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.91  E-value=1.3e-25  Score=176.12  Aligned_cols=171  Identities=17%  Similarity=0.169  Sum_probs=121.5

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      ++.+.|+|+.+.++.+.+.........+...    ..+.++|||+||||||||++|++||+.++.+++.+++++... ++
T Consensus         6 ~~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~----~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~-g~   80 (246)
T d1d2na_           6 YIMNGIIKWGDPVTRVLDDGELLVQQTKNSD----RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMI-GF   80 (246)
T ss_dssp             TCTTCCCCCSHHHHHHHHHHHHHHHHHHHCS----SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCT-TC
T ss_pred             hhccCCcCcCHHHHHHHHHHHHHHHHHhccC----CCCCeEEEEECcCCCCHHHHHHHHhhcccccccccccccccc-cc
Confidence            4566788887777666665543333222111    123468999999999999999999999999999999876542 45


Q ss_pred             cCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCC
Q psy5910          82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN  161 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~  161 (225)
                      .+......++.+|..+    ...+|+||||||+|++...+....   .....+.+.|+.+|++...            ..
T Consensus        81 ~~~~~~~~i~~if~~A----~~~~p~il~iDEid~l~~~~~~~~---~~~~~~~~~ll~~l~~~~~------------~~  141 (246)
T d1d2na_          81 SETAKCQAMKKIFDDA----YKSQLSCVVVDDIERLLDYVPIGP---RFSNLVLQALLVLLKKAPP------------QG  141 (246)
T ss_dssp             CHHHHHHHHHHHHHHH----HTSSEEEEEECCHHHHTTCBTTTT---BCCHHHHHHHHHHTTCCCS------------TT
T ss_pred             cccchhhhhhhhhhhh----hhcccceeehhhhhhHhhhccccc---chhHHHHHHHHHHhcCCCc------------cc
Confidence            5555456677788776    556889999999999987654321   2234577888888886421            11


Q ss_pred             CceeEEecCcceeeccCccccHHHH-HHhhccccccccccccc
Q psy5910         162 PQVFNIDTTNILFIAGGAFSGIENF-IINRINQETNFLEKLNN  203 (225)
Q Consensus       162 ~~~~~i~ttn~~~i~~~~~~~l~~a-l~~Rf~~~i~~~~~~~~  203 (225)
                      .++++|+|||.       ++.+|++ +.+||+..|.+|.+...
T Consensus       142 ~~v~vi~tTn~-------~~~ld~~~~~~rF~~~i~~P~~~~r  177 (246)
T d1d2na_         142 RKLLIIGTTSR-------KDVLQEMEMLNAFSTTIHVPNIATG  177 (246)
T ss_dssp             CEEEEEEEESC-------HHHHHHTTCTTTSSEEEECCCEEEH
T ss_pred             cceeeeeccCC-------hhhccchhhcCccceEEecCCchhH
Confidence            22889999998       6688876 66799999998776653

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=99.90  E-value=7.1e-25  Score=176.47  Aligned_cols=150  Identities=15%  Similarity=0.148  Sum_probs=108.8

Q ss_pred             EeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC--CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCC
Q psy5910          29 FLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ  106 (225)
Q Consensus        29 ~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  106 (225)
                      ......+...+++.+|++||||||||.+|+++|.+++  .+|+.++++++.+ +|.|+. +..++.+|+.+      ..+
T Consensus       112 ~~~~~~~~~~~~g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~~-~~~G~~-e~~~~~~f~~a------~~~  183 (321)
T d1w44a_         112 VVAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNTDF-NVFVDDIARAM------LQH  183 (321)
T ss_dssp             EEEEETTEEEESEEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSST-TCBCCH-HHHHHHHHHHH------HHC
T ss_pred             HHHHHhhcccCCceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhhh-cccchH-HHHHHHHHHHH------hhc
Confidence            3444455556666667899999999999999999985  6799999999986 799987 67788898876      358


Q ss_pred             CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHH
Q psy5910         107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENF  186 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~a  186 (225)
                      +||||||+|.+.+.++...... ..+++.+.|+..||+....           .+  +++|+|||+    ....+.++++
T Consensus       184 ~ilf~DEid~~~~~r~~~~~~~-~~~r~v~~lL~e~dg~~~~-----------~~--v~viaatN~----~~~~~~i~~~  245 (321)
T d1w44a_         184 RVIVIDSLKNVIGAAGGNTTSG-GISRGAFDLLSDIGAMAAS-----------RG--CVVIASLNP----TSNDDKIVEL  245 (321)
T ss_dssp             SEEEEECCTTTC------------CCHHHHHHHHHHHHHHHH-----------HT--CEEEEECCC----CCCCHHHHHH
T ss_pred             cEEEeehhhhhccccccCCCCC-cchhhhhhhhhhccccccC-----------CC--eEEEEeCCC----cccccchhhh
Confidence            9999999999999886543322 2345889999999875321           12  899999996    1112347777


Q ss_pred             HHh--hcccccccccccccc
Q psy5910         187 IIN--RINQETNFLEKLNNN  204 (225)
Q Consensus       187 l~~--Rf~~~i~~~~~~~~~  204 (225)
                      ++|  ||++.+..+.|+.+.
T Consensus       246 ~~r~~Rf~~~v~v~~pd~~~  265 (321)
T d1w44a_         246 VKEASRSNSTSLVISTDVDG  265 (321)
T ss_dssp             HHHHHHHSCSEEEEECSSTT
T ss_pred             hhccCcccceeecCCCChHH
Confidence            777  999998888888765

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=99.87  E-value=2.4e-23  Score=175.31  Aligned_cols=189  Identities=42%  Similarity=0.652  Sum_probs=144.1

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      +||++|+||++||+.|.-+++++|++............+.||||+||||||||.|||.||+.++.||+.++|+.+++.||
T Consensus        11 ~Ld~yVvGQ~~AKk~lsvav~nhyrR~~~~~~~~~ei~ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~daT~fTeaGY   90 (443)
T d1g41a_          11 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGY   90 (443)
T ss_dssp             HHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----
T ss_pred             HhcCcccCcHHHHHHHHHHHHHHHHHhhcccccccccccccEEEECCCCCCHHHHHHHHHHHhCCCEEEeecceeeecce
Confidence            58999999999999999999999988766655556667789999999999999999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHHHhcchhhh-----------------------------------------------------------
Q psy5910          82 VGDDVESIIQKLLHECDYDVE-----------------------------------------------------------  102 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  102 (225)
                      +|.+++..++.+.+.+.+.+.                                                           
T Consensus        91 vG~DVesii~~L~~~a~~~v~~~e~~~V~~~~~~~~~e~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~~~~~  170 (443)
T d1g41a_          91 VGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDK  170 (443)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHHHHHSCC---------------------------------------------------
T ss_pred             eecchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccchhhhhHHHHHHHhcCCcccc
Confidence            999999888887654321110                                                           


Q ss_pred             ----------------------------------------------------------------------------hhCC
Q psy5910         103 ----------------------------------------------------------------------------LAEQ  106 (225)
Q Consensus       103 ----------------------------------------------------------------------------~~~~  106 (225)
                                                                                                  ...+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~~~~i~~~ai~~v~~~  250 (443)
T d1g41a_         171 EIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQN  250 (443)
T ss_dssp             ------------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcccccccccchhhhhhhHHHhhhccCCccccceeeehHHHHHHHHHHHhhhccchhHHHHHHHHHHhcc
Confidence                                                                                        0134


Q ss_pred             CEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCcc-----c
Q psy5910         107 SIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF-----S  181 (225)
Q Consensus       107 ~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~-----~  181 (225)
                      +++|+||+++........ +.+.+.+.++..++..+++......             ...+.+.+.+|++.+++     .
T Consensus       251 ~~~~~dei~k~~~~~~~~-g~d~~~eg~~~~ll~~~e~~~v~~~-------------~~~~~~~~~l~i~~~~~~~~~~~  316 (443)
T d1g41a_         251 GIVFIDEIDKICKKGEYS-GADVSREGVQRDLLPLVEGSTVSTK-------------HGMVKTDHILFIASGAFQVARPS  316 (443)
T ss_dssp             CEEEEETGGGGSCCSSCS-SSHHHHHHHHHHHHHHHHCCEEEET-------------TEEEECTTCEEEEEECCSSCCGG
T ss_pred             CccccchhhhhhhcccCC-CCCcccchhhhhhhhhccccccccc-------------cccccccchhhccccchhhcccc
Confidence            688999999988765432 3455667788899999987543211             34577888888888754     4


Q ss_pred             cHHHHHHhhcccccccccccccc
Q psy5910         182 GIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       182 ~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +|-|.+.-||.....+..-+++.
T Consensus       317 gliPEliGRlPi~v~L~~L~~~d  339 (443)
T d1g41a_         317 DLIPELQGRLPIRVELTALSAAD  339 (443)
T ss_dssp             GSCHHHHTTCCEEEECCCCCHHH
T ss_pred             cchhhhccceEEEEEccCccHHH
Confidence            57778889998887777666654

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=1.6e-23  Score=169.78  Aligned_cols=174  Identities=22%  Similarity=0.269  Sum_probs=119.7

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccccc--
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA--   79 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~--   79 (225)
                      .|++.|+||+++++.|..++...+.+....     ..|...+||+||||||||.||++||+.++.+++.++++.+.+.  
T Consensus        19 ~L~~~viGQ~~a~~~v~~~v~~~~~~l~~~-----~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~~d~s~~~~~~~   93 (315)
T d1r6bx3          19 RLKMLVFGQDKAIEALTEAIKMARAGLGHE-----HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHT   93 (315)
T ss_dssp             HHTTTSCSCHHHHHHHHHHHHHHHTTCSCT-----TSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSC
T ss_pred             HhCCeecChHHHHHHHHHHHHHHHccCCCC-----CCCceEEEEECCCcchhHHHHHHHHhhccCCeeEeccccccchhh
Confidence            478999999999999999886554433211     1344468899999999999999999999999999999887653  


Q ss_pred             ---------CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcc
Q psy5910          80 ---------GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSIT  150 (225)
Q Consensus        80 ---------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~  150 (225)
                               +|.|......+....       .....+|++|||+|++++.             +++.|+++|+.+..+  
T Consensus        94 ~~~l~g~~~gy~g~~~~~~l~~~~-------~~~~~~vvl~DeieKa~~~-------------V~~~lLqild~G~lt--  151 (315)
T d1r6bx3          94 VSRLIGAPPGYVGFDQGGLLTDAV-------IKHPHAVLLLDEIEKAHPD-------------VFNILLQVMDNGTLT--  151 (315)
T ss_dssp             CSSSCCCCSCSHHHHHTTHHHHHH-------HHCSSEEEEEETGGGSCHH-------------HHHHHHHHHHHSEEE--
T ss_pred             hhhhcccCCCccccccCChhhHHH-------HhCccchhhhcccccccch-------------HhhhhHHhhccceec--
Confidence                     233333222222222       3457789999999999987             999999999976543  


Q ss_pred             ccccccCCCCCCceeEEecCcceeeccC----------cc--------ccHHHHHHhhcccccccccccccc
Q psy5910         151 SLAEKKNPSQNPQVFNIDTTNILFIAGG----------AF--------SGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       151 ~~~~~~~~~~~~~~~~i~ttn~~~i~~~----------~~--------~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ...++..+..+  .++|+|||...-...          ..        ..+.|.++.||+..+.|.+...+.
T Consensus       152 d~~Gr~vdf~n--~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~  221 (315)
T d1r6bx3         152 DNNGRKADFRN--VVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDV  221 (315)
T ss_dssp             ETTTEEEECTT--EEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHH
T ss_pred             CCCCCccCccc--eEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhH
Confidence            33444455666  788888886431110          00        124556667777766665555443

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=99.84  E-value=1.8e-21  Score=151.61  Aligned_cols=155  Identities=21%  Similarity=0.261  Sum_probs=106.5

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCC
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGD   84 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~   84 (225)
                      +.|+||+++++.|..++.....+.         .+.+++||+||||||||++|+++|++++.++..+++.....      
T Consensus         9 ~divGqe~~~~~l~~~i~~~~~~~---------~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~------   73 (238)
T d1in4a2           9 DEFIGQENVKKKLSLALEAAKMRG---------EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------   73 (238)
T ss_dssp             GGCCSCHHHHHHHHHHHHHHHHHT---------CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCcHHHHHHHHHhccCCCcccccCccccc------
Confidence            457999999999998875433221         23358999999999999999999999999999888766532      


Q ss_pred             cHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc-----cccCCC
Q psy5910          85 DVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA-----EKKNPS  159 (225)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~-----~~~~~~  159 (225)
                        ...+...+..      ...+.++|+||++.+.+.             .++.++..++..........     ....+.
T Consensus        74 --~~~~~~~~~~------~~~~~~~~ide~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (238)
T d1in4a2          74 --QGDMAAILTS------LERGDVLFIDEIHRLNKA-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDI  132 (238)
T ss_dssp             --HHHHHHHHHH------CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHTSCCCC---------------
T ss_pred             --HHHHHHHHHh------hccCCchHHHHHHHhhhH-------------HHhhcccceeeeeeeeeecCcccccccccCC
Confidence              1122233322      246789999999999866             67888888875432211100     001112


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+  +++|+++|.       ...+++++++||+..+.|+.|+.+.
T Consensus       133 ~~--~~~I~at~~-------~~~~~~~~~~r~~~~~~~~~~~~~~  168 (238)
T d1in4a2         133 QP--FTLVGATTR-------SGLLSSPLRSRFGIILELDFYTVKE  168 (238)
T ss_dssp             CC--CEEEEEESC-------GGGSCHHHHTTCSEEEECCCCCHHH
T ss_pred             CC--eEEEEecCC-------CccccccceeeeeEEEEecCCCHHH
Confidence            22  566666666       5678999999998888888877655

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.84  E-value=4.1e-22  Score=161.20  Aligned_cols=142  Identities=29%  Similarity=0.413  Sum_probs=94.0

Q ss_pred             CCcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccc
Q psy5910           2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTE   78 (225)
Q Consensus         2 ~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~   78 (225)
                      .|++.|+||+++++.+..++.....+....     ..|...+||+||||||||.+|+.+|+.+   +.+++.++++.+.+
T Consensus        20 ~L~~~v~GQ~~ai~~v~~~i~~~~~~l~~~-----~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~~~   94 (315)
T d1qvra3          20 ELHKRVVGQDEAIRAVADAIRRARAGLKDP-----NRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYME   94 (315)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHHHGGGCSCS-----SSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCS
T ss_pred             HhcCeEeCHHHHHHHHHHHHHHHhcCCCCC-----CCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccccc
Confidence            467899999999999988775443332111     1233356799999999999999999998   67899999876653


Q ss_pred             -----------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          79 -----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        79 -----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                                 .+|.|.+....+....       .....+|++|||+|++++.             +++.|+++|+....
T Consensus        95 ~~~~~~L~g~~~gyvG~~~~~~l~~~~-------~~~p~~Vvl~DEieK~~~~-------------v~~~ll~~l~~g~~  154 (315)
T d1qvra3          95 KHAVSRLIGAPPGYVGYEEGGQLTEAV-------RRRPYSVILFDEIEKAHPD-------------VFNILLQILDDGRL  154 (315)
T ss_dssp             SGGGGGC--------------CHHHHH-------HHCSSEEEEESSGGGSCHH-------------HHHHHHHHHTTTEE
T ss_pred             chhhhhhcCCCCCCcCcccCChHHHHH-------HhCCCcEEEEehHhhcCHH-------------HHHHHHHHhccCce
Confidence                       3677765444344333       3346799999999999988             89999999997544


Q ss_pred             CccccccccCCCCCCceeEEecCcc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNI  172 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~  172 (225)
                      +  ...++..+..+  .++|+|||.
T Consensus       155 ~--~~~gr~v~~~~--~i~i~tsnl  175 (315)
T d1qvra3         155 T--DSHGRTVDFRN--TVIILTSNL  175 (315)
T ss_dssp             C--CSSSCCEECTT--EEEEEECCT
T ss_pred             e--CCCCcEecCcc--eEEEEeccc
Confidence            3  22233333333  556666664

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=6.4e-20  Score=142.82  Aligned_cols=159  Identities=21%  Similarity=0.319  Sum_probs=100.0

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDD   85 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~   85 (225)
                      .++||+++++.|..++.....+.         .+.+++||+||||||||++|+++|+.++.++...++.....       
T Consensus        10 divGq~~~~~~L~~~i~~~~~~~---------~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~-------   73 (239)
T d1ixsb2          10 EYIGQERLKQKLRVYLEAAKARK---------EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK-------   73 (239)
T ss_dssp             GSCSCHHHHHHHHHHHHHHTTSS---------SCCCCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCS-------
T ss_pred             HhCCHHHHHHHHHHHHHHHHhcC---------CCCCeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCcccc-------
Confidence            46999999999988774433221         23468999999999999999999999999999998876532       


Q ss_pred             HHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCcee
Q psy5910          86 VESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVF  165 (225)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~  165 (225)
                       ...........     ...++++++||++++.+.             .+..++..++..........   .....  ..
T Consensus        74 -~~~~~~~~~~~-----~~~~~i~~iDe~~~~~~~-------------~~~~l~~~~e~~~~~~~~~~---~~~~~--~~  129 (239)
T d1ixsb2          74 -PGDLAAILANS-----LEEGDILFIDEIHRLSRQ-------------AEEHLYPAMEDFVMDIVIGQ---GPAAR--TI  129 (239)
T ss_dssp             -HHHHHHHHHTT-----CCTTCEEEEETGGGCCHH-------------HHHHHHHHHHHSEEEEECSC---TTCCC--EE
T ss_pred             -chhhHHHHHhh-----ccCCCeeeeecccccchh-------------HHHhhhhhhhhhhhhhhhcc---chhhh--hc
Confidence             11111222111     235689999999999876             67888888875321110000   00001  22


Q ss_pred             EEecCcceeeccC-ccccHHHHHHhhcccccccccccccc
Q psy5910         166 NIDTTNILFIAGG-AFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       166 ~i~ttn~~~i~~~-~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      ....++.++++++ +....+.+.++|++..+.+..|+.+.
T Consensus       130 ~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  169 (239)
T d1ixsb2         130 RLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEE  169 (239)
T ss_dssp             EEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHH
T ss_pred             ccCCCCEEEEeeccCcccccchhhcccceeeEeeccChhh
Confidence            2233333333332 24456666777777776666666554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.74  E-value=2.8e-19  Score=145.78  Aligned_cols=161  Identities=19%  Similarity=0.232  Sum_probs=101.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE------   78 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~------   78 (225)
                      ..|+||+++|+.|.-++..              ....|+||+||||||||++||+++..+.. +..+....+..      
T Consensus         7 ~~I~Gq~~~kral~laa~~--------------~~~h~vLl~G~pG~GKT~lar~~~~iLp~-~~~~~~~~~~~~~~~~~   71 (333)
T d1g8pa_           7 SAIVGQEDMKLALLLTAVD--------------PGIGGVLVFGDRGTGKSTAVRALAALLPE-IEAVEGCPVSSPNVEMI   71 (333)
T ss_dssp             GGSCSCHHHHHHHHHHHHC--------------GGGCCEEEECCGGGCTTHHHHHHHHHSCC-EEEETTCTTCCSSGGGS
T ss_pred             hhccCcHHHHHHHHHHHhc--------------cCCCeEEEECCCCccHHHHHHHHHHhCCC-chhhccCccccCccccc
Confidence            4689999999876543310              12348999999999999999999988732 22221111000      


Q ss_pred             ---------------------------cCccC-CcHHHHHHH-HHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCC
Q psy5910          79 ---------------------------AGYVG-DDVESIIQK-LLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDV  129 (225)
Q Consensus        79 ---------------------------~~~~g-~~~~~~~~~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~  129 (225)
                                                 ....| .+....... ......|.+..+.++|+|+||++++.++         
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~---------  142 (333)
T d1g8pa_          72 PDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH---------  142 (333)
T ss_dssp             CTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH---------
T ss_pred             cchhhccccCcccccCceeeccCCCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHH---------
Confidence                                       00011 111111111 0111124556678899999999999987         


Q ss_pred             ChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhccccccccccc
Q psy5910         130 SGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKL  201 (225)
Q Consensus       130 ~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~  201 (225)
                          +++.|++.|++...++...+.......+  +.+++|+|..      ...+++++++||+..+..+.|.
T Consensus       143 ----~~~aLl~~me~~~v~i~r~g~~~~~p~~--f~liaa~Np~------~~~l~~~llDRf~~~i~v~~~~  202 (333)
T d1g8pa_         143 ----IVDLLLDVAQSGENVVERDGLSIRHPAR--FVLVGSGNPE------EGDLRPQLLDRFGLSVEVLSPR  202 (333)
T ss_dssp             ----HHHHHHHHHHHSEEEECCTTCCEEEECC--EEEEEEECSC------SCCCCHHHHTTCSEEEECCCCC
T ss_pred             ----HHHHHhhhhcCCeEEecccCceecCCCC--EEEEEecCcc------ccccccchhhhhcceeeccCcc
Confidence                8999999999776665443332222223  7888888871      2468999999999886666554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=2.3e-17  Score=128.29  Aligned_cols=143  Identities=22%  Similarity=0.255  Sum_probs=94.6

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----------------   67 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----------------   67 (225)
                      +.++||+++++.|...+...             ..+..+||+||||||||++|+++++.++.+                 
T Consensus        12 ~dlig~~~~~~~L~~~i~~~-------------~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i   78 (239)
T d1njfa_          12 ADVVGQEHVLTALANGLSLG-------------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI   78 (239)
T ss_dssp             GGSCSCHHHHHHHHHHHHTT-------------CCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred             HHccChHHHHHHHHHHHHcC-------------CCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHH
Confidence            35699999999998776211             112358899999999999999999988433                 


Q ss_pred             -------eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          68 -------IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        68 -------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                             ++.++..+.     .  . ...++.+.+............|++|||+|.+...             .++.|++
T Consensus        79 ~~~~~~~~~~~~~~~~-----~--~-i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~-------------~q~~Llk  137 (239)
T d1njfa_          79 EQGRFVDLIEIDAASR-----T--K-VEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRH-------------SFNALLK  137 (239)
T ss_dssp             HHTCCTTEEEEETTCS-----S--S-HHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHH-------------HHHHHHH
T ss_pred             HcCCCCeEEEecchhc-----C--C-HHHHHHHHHHHHhccccCCCEEEEEECcccCCHH-------------HHHHHHH
Confidence                   222222111     1  1 2234445544422212224459999999999866             7899999


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .||...             .+  ..+|.++|.       ...+.+++++|+ ..+.|+.|+.+.
T Consensus       138 ~lE~~~-------------~~--~~~il~tn~-------~~~i~~~i~SRc-~~i~~~~~~~~~  178 (239)
T d1njfa_         138 TLEEPP-------------EH--VKFLLATTD-------PQKLPVTILSRC-LQFHLKALDVEQ  178 (239)
T ss_dssp             HHHSCC-------------TT--EEEEEEESC-------GGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred             HHhcCC-------------CC--eEEEEEcCC-------ccccChhHhhhh-cccccccCcHHH
Confidence            998632             22  556666665       568999999997 347777777654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.68  E-value=1.1e-17  Score=129.34  Aligned_cols=144  Identities=24%  Similarity=0.264  Sum_probs=98.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC-----CCeEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~-----~~~~~~~~~~~~~~   79 (225)
                      +.|+|++++++.|..++..              .+.+++||+||||||||++|+++|++++     .+++.+++++... 
T Consensus        24 ~diig~~~~~~~l~~~i~~--------------~~~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~-   88 (231)
T d1iqpa2          24 DDIVGQEHIVKRLKHYVKT--------------GSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-   88 (231)
T ss_dssp             TTCCSCHHHHHHHHHHHHH--------------TCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH-
T ss_pred             HHccCcHHHHHHHHHHHHc--------------CCCCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccc-
Confidence            3468999999999887721              1234799999999999999999999874     3567777655432 


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                       .  ..............  ........|+++||++.+...             .+..|+..++....            
T Consensus        89 -~--~~~~~~~~~~~~~~--~~~~~~~~iilide~d~~~~~-------------~~~~ll~~l~~~~~------------  138 (231)
T d1iqpa2          89 -I--NVIREKVKEFARTK--PIGGASFKIIFLDEADALTQD-------------AQQALRRTMEMFSS------------  138 (231)
T ss_dssp             -H--HTTHHHHHHHHHSC--CGGGCSCEEEEEETGGGSCHH-------------HHHHHHHHHHHTTT------------
T ss_pred             -h--hHHHHHHHHHHhhh--hccCCCceEEeehhhhhcchh-------------HHHHHhhhcccCCc------------
Confidence             0  01111111111111  122346789999999999877             78899999985321            


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       +  +.+|.++|.       ...+++++++|+.. +.|+.|..+.
T Consensus       139 -~--~~~i~~~n~-------~~~i~~~l~sR~~~-i~~~~~~~~~  172 (231)
T d1iqpa2         139 -N--VRFILSCNY-------SSKIIEPIQSRCAI-FRFRPLRDED  172 (231)
T ss_dssp             -T--EEEEEEESC-------GGGSCHHHHHTEEE-EECCCCCHHH
T ss_pred             -c--eEEEeccCC-------hhhchHhHhCcccc-ccccccchhh
Confidence             2  666777776       66899999999743 6666666654

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=5.4e-18  Score=130.56  Aligned_cols=145  Identities=17%  Similarity=0.181  Sum_probs=96.0

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----eEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----IIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~   79 (225)
                      +.++||+++++.|..++..              ...+++||+||||||||++|+.+++.++..     ++.+++.+....
T Consensus        15 ~d~ig~~~~~~~L~~~~~~--------------~~~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~   80 (224)
T d1sxjb2          15 SDIVGNKETIDRLQQIAKD--------------GNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI   80 (224)
T ss_dssp             GGCCSCTHHHHHHHHHHHS--------------CCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH
T ss_pred             HHhcCCHHHHHHHHHHHHc--------------CCCCeEEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCc
Confidence            3468999999999887621              123479999999999999999999988543     666666554321


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                      .    ........ +.............++++||+|.+...             .++.|+..++....            
T Consensus        81 ~----~i~~~~~~-~~~~~~~~~~~~~kviiiDe~d~~~~~-------------~~~~ll~~~e~~~~------------  130 (224)
T d1sxjb2          81 D----VVRNQIKH-FAQKKLHLPPGKHKIVILDEADSMTAG-------------AQQALRRTMELYSN------------  130 (224)
T ss_dssp             H----HHHTHHHH-HHHBCCCCCTTCCEEEEEESGGGSCHH-------------HHHTTHHHHHHTTT------------
T ss_pred             e----ehhhHHHH-HHHhhccCCCcceEEEEEecccccchh-------------HHHHHhhhcccccc------------
Confidence            0    01111111 111111112234569999999999977             78899998885321            


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                       .  ..++.+++.       .+.+.+++++|+. .+.|+.|+.+.
T Consensus       131 -~--~~~i~~~~~-------~~~i~~~l~sr~~-~i~~~~~~~~~  164 (224)
T d1sxjb2         131 -S--TRFAFACNQ-------SNKIIEPLQSQCA-ILRYSKLSDED  164 (224)
T ss_dssp             -T--EEEEEEESC-------GGGSCHHHHTTSE-EEECCCCCHHH
T ss_pred             -c--eeeeeccCc-------hhhhhhHHHHHHH-Hhhhcccchhh
Confidence             1  444444444       5688999999973 48888888775

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2e-17  Score=127.39  Aligned_cols=144  Identities=22%  Similarity=0.228  Sum_probs=93.4

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC-----eEEeccCccccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP-----IIVVDATSFTEA   79 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~-----~~~~~~~~~~~~   79 (225)
                      +.++||+++++.|..++..              ...+++||+||||||||++|+++|++++..     +...+..+..  
T Consensus        14 ~divg~~~~~~~L~~~i~~--------------~~~~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~--   77 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDE--------------GKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR--   77 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHT--------------TCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC--
T ss_pred             HHccCcHHHHHHHHHHHHc--------------CCCCeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccC--
Confidence            3479999999999887621              112479999999999999999999987433     3444443321  


Q ss_pred             CccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCC
Q psy5910          80 GYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPS  159 (225)
Q Consensus        80 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~  159 (225)
                         +.............. .........+++|||+|.+...             .++.|+..|+...             
T Consensus        78 ---~~~~~~~~~~~~~~~-~~~~~~~~kiiiiDe~d~~~~~-------------~~~~Ll~~le~~~-------------  127 (227)
T d1sxjc2          78 ---GIDVVRNQIKDFAST-RQIFSKGFKLIILDEADAMTNA-------------AQNALRRVIERYT-------------  127 (227)
T ss_dssp             ---SHHHHHTHHHHHHHB-CCSSSCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHTT-------------
T ss_pred             ---Ceeeeecchhhcccc-ccccCCCeEEEEEeccccchhh-------------HHHHHHHHhhhcc-------------
Confidence               211111111111111 1111224469999999999877             7899999998632             


Q ss_pred             CCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         160 QNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       160 ~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      .+  .+++.++|.       ...+++++++|+ ..+.|..|..+.
T Consensus       128 ~~--~~~~~~~~~-------~~~i~~~i~sr~-~~i~~~~~~~~~  162 (227)
T d1sxjc2         128 KN--TRFCVLANY-------AHKLTPALLSQC-TRFRFQPLPQEA  162 (227)
T ss_dssp             TT--EEEEEEESC-------GGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred             cc--eeeccccCc-------HHHhHHHHHHHH-hhhccccccccc
Confidence            12  555566665       568899999986 346777777655

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=2.6e-16  Score=121.66  Aligned_cols=147  Identities=19%  Similarity=0.240  Sum_probs=93.7

Q ss_pred             CcceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh------CCCeEEeccCcc
Q psy5910           3 LDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII------NVPIIVVDATSF   76 (225)
Q Consensus         3 l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~------~~~~~~~~~~~~   76 (225)
                      +++ ++|++++++.|..++..              ...++++|+||||||||++++++++.+      ....+.+++...
T Consensus        11 ~~d-iig~~~~~~~l~~~i~~--------------~~~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~   75 (237)
T d1sxjd2          11 LDE-VTAQDHAVTVLKKTLKS--------------ANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDE   75 (237)
T ss_dssp             TTT-CCSCCTTHHHHHHHTTC--------------TTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSC
T ss_pred             HHH-ccCcHHHHHHHHHHHHc--------------CCCCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhheecccc
Confidence            444 68999999999876621              122469999999999999999999986      455666666544


Q ss_pred             cccCccCCcHHHHHHHHHHhcc-----hhh---hhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcC
Q psy5910          77 TEAGYVGDDVESIIQKLLHECD-----YDV---ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLS  148 (225)
Q Consensus        77 ~~~~~~g~~~~~~~~~~~~~~~-----~~~---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~  148 (225)
                      .........    +........     ...   ......|++|||++.+...             .++.++..++.... 
T Consensus        76 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~-------------~~~~l~~~~~~~~~-  137 (237)
T d1sxjd2          76 RGISIVREK----VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTAD-------------AQSALRRTMETYSG-  137 (237)
T ss_dssp             CCHHHHTTH----HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHH-------------HHHHHHHHHHHTTT-
T ss_pred             ccchHHHHH----HHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHH-------------HHHHHhhccccccc-
Confidence            321111111    111111100     000   1123459999999999876             67888888875321 


Q ss_pred             ccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         149 ITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                  .  ..++.+++.       ...+.+++++|| ..+.|+.|+.++
T Consensus       138 ------------~--~~~i~~~~~-------~~~~~~~l~sr~-~~i~f~~~~~~~  171 (237)
T d1sxjd2         138 ------------V--TRFCLICNY-------VTRIIDPLASQC-SKFRFKALDASN  171 (237)
T ss_dssp             ------------T--EEEEEEESC-------GGGSCHHHHHHS-EEEECCCCCHHH
T ss_pred             ------------c--ccccccccc-------cccccccccchh-hhhccccccccc
Confidence                        1  444444444       457888999997 457888888776

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=6.6e-16  Score=120.51  Aligned_cols=158  Identities=15%  Similarity=0.130  Sum_probs=93.1

Q ss_pred             ceeechhhHHhhheeeeEecccceEee---cccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLL---KSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY   81 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~   81 (225)
                      +.++|+++++++|...+..+....+..   ....-....+++||+||||||||++|+++|+.++.+++.+++++....  
T Consensus        14 ~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~~~~--   91 (253)
T d1sxja2          14 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK--   91 (253)
T ss_dssp             GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCH--
T ss_pred             HHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccchhh--
Confidence            567999999999988774432211100   000011223579999999999999999999999999999998776431  


Q ss_pred             cCCcHHHHHHHHHHhcc--------------hhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCc
Q psy5910          82 VGDDVESIIQKLLHECD--------------YDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNL  147 (225)
Q Consensus        82 ~g~~~~~~~~~~~~~~~--------------~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~  147 (225)
                            ..+........              .........++++||++.+......          ....++....... 
T Consensus        92 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~~~~~----------~~~~~~~~~~~~~-  154 (253)
T d1sxja2          92 ------TLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG----------GVGQLAQFCRKTS-  154 (253)
T ss_dssp             ------HHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT----------HHHHHHHHHHHCS-
T ss_pred             ------HHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeeccccccchhh----------hhHHHhhhhcccc-
Confidence                  11111111100              0011235679999999998866311          3344444443211 


Q ss_pred             CccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         148 SITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                  ..  ++++++++.       ...++ .+ +|+...+.|+.|+.+.
T Consensus       155 ------------~~--ii~i~~~~~-------~~~~~-~l-~~~~~~i~f~~~~~~~  188 (253)
T d1sxja2         155 ------------TP--LILICNERN-------LPKMR-PF-DRVCLDIQFRRPDANS  188 (253)
T ss_dssp             ------------SC--EEEEESCTT-------SSTTG-GG-TTTSEEEECCCCCHHH
T ss_pred             ------------cc--ccccccccc-------ccccc-cc-cceeeeeeccccchhH
Confidence                        11  555555444       22333 33 4556678888888865

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1.6e-15  Score=118.11  Aligned_cols=151  Identities=21%  Similarity=0.243  Sum_probs=88.8

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC---eEEeccCcc-----
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP---IIVVDATSF-----   76 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~---~~~~~~~~~-----   76 (225)
                      +.++|++++++.|...+...             ....++||+||||||||++|+++|+.+..+   ....+....     
T Consensus        11 ~diig~~~~~~~L~~~~~~~-------------~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~   77 (252)
T d1sxje2          11 NALSHNEELTNFLKSLSDQP-------------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN   77 (252)
T ss_dssp             GGCCSCHHHHHHHHTTTTCT-------------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred             HHccCcHHHHHHHHHHHHcC-------------CCCCeEEEECCCCCCHHHHHHHHHHhhcCcccccccccccccccccc
Confidence            34799999999997765211             122479999999999999999999986211   111111000     


Q ss_pred             --------cc-------cCccCCcHHHHHHHHHHhcc--h--------hhhhhCCCEEEEcchhhhcccccccCCCCCCh
Q psy5910          77 --------TE-------AGYVGDDVESIIQKLLHECD--Y--------DVELAEQSIIYIDEIDKISKKTDVVSGKDVSG  131 (225)
Q Consensus        77 --------~~-------~~~~g~~~~~~~~~~~~~~~--~--------~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~  131 (225)
                              ..       ....+...............  .        ........+++|||+|.+...           
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~-----------  146 (252)
T d1sxje2          78 RKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKD-----------  146 (252)
T ss_dssp             -----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHH-----------
T ss_pred             chhhhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccc-----------
Confidence                    00       00001110111111111110  0        000123459999999999766           


Q ss_pred             HHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         132 EGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       132 ~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                        .++.|+..++...             .+  +.+|.++|.       .+.+++++++|| ..|.|+.|+.++
T Consensus       147 --~~~~l~~~~e~~~-------------~~--~~~Il~tn~-------~~~i~~~l~sR~-~~i~~~~~~~~~  194 (252)
T d1sxje2         147 --AQAALRRTMEKYS-------------KN--IRLIMVCDS-------MSPIIAPIKSQC-LLIRCPAPSDSE  194 (252)
T ss_dssp             --HHHHHHHHHHHST-------------TT--EEEEEEESC-------SCSSCHHHHTTS-EEEECCCCCHHH
T ss_pred             --cchhhhccccccc-------------cc--ccceeeecc-------ccchhhhhhcch-heeeecccchhh
Confidence              6888999998532             22  566666666       678999999998 368888888765

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=1.4e-14  Score=109.84  Aligned_cols=143  Identities=8%  Similarity=0.075  Sum_probs=89.8

Q ss_pred             echhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCC--------------------
Q psy5910           8 IGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVP--------------------   67 (225)
Q Consensus         8 ~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~--------------------   67 (225)
                      -+++++.+.+...+...             ..+..+||+||+|+|||++|+.+|+.+...                    
T Consensus         5 Pw~~~~~~~l~~~~~~~-------------~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~   71 (207)
T d1a5ta2           5 PWLRPDFEKLVASYQAG-------------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAG   71 (207)
T ss_dssp             GGGHHHHHHHHHHHHTT-------------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHcC-------------CcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhc
Confidence            35666677776655110             112248899999999999999999987321                    


Q ss_pred             ----eEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHh
Q psy5910          68 ----IIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE  143 (225)
Q Consensus        68 ----~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~  143 (225)
                          ++.+....     ....-....++.+.+............|++|||+|.+...             .++.|++.||
T Consensus        72 ~~~~~~~~~~~~-----~~~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~-------------a~n~Llk~lE  133 (207)
T d1a5ta2          72 THPDYYTLAPEK-----GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLE  133 (207)
T ss_dssp             CCTTEEEECCCT-----TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHT
T ss_pred             cccccchhhhhh-----cccccccchhhHHhhhhhhccccCccceEEechhhhhhhh-------------hhHHHHHHHH
Confidence                11111111     0111012223444443322222335669999999999977             8999999999


Q ss_pred             cCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         144 GVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +.             ..+  +++|.++|.       ...+.+++++|+ ..+.|+.|+.+.
T Consensus       134 ep-------------~~~--~~fIl~t~~-------~~~ll~tI~SRc-~~i~~~~~~~~~  171 (207)
T d1a5ta2         134 EP-------------PAE--TWFFLATRE-------PERLLATLRSRC-RLHYLAPPPEQY  171 (207)
T ss_dssp             SC-------------CTT--EEEEEEESC-------GGGSCHHHHTTS-EEEECCCCCHHH
T ss_pred             hh-------------ccc--ceeeeeecC-------hhhhhhhhccee-EEEecCCCCHHH
Confidence            62             223  555555555       568999999996 558888777664

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2e-15  Score=112.32  Aligned_cols=152  Identities=19%  Similarity=0.291  Sum_probs=96.1

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      -++|.++.++++...+..              ..+.+++|+||||+|||++++.+|...          +.+++.++.+.
T Consensus        23 ~~igRd~Ei~~l~~iL~r--------------~~k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~   88 (195)
T d1jbka_          23 PVIGRDEEIRRTIQVLQR--------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA   88 (195)
T ss_dssp             CCCSCHHHHHHHHHHHTS--------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHH
T ss_pred             CCcCcHHHHHHHHHHHhc--------------cCCCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHH
Confidence            468999999999876611              234689999999999999999999755          56789998877


Q ss_pred             ccc-cCccCCcHHHHHHHHHHhcchhhhhh-CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          76 FTE-AGYVGDDVESIIQKLLHECDYDVELA-EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      +.. .+|.|+ .+..+..++...    ... .+.|+||||++.+....+..++.     ++-+.|...|....       
T Consensus        89 LiAg~~~rG~-~E~rl~~il~e~----~~~~~~iILfIDeih~l~~~g~~~g~~-----d~~~~Lkp~L~rg~-------  151 (195)
T d1jbka_          89 LVAGAKYRGE-FEERLKGVLNDL----AKQEGNVILFIDELHTMVGAGKADGAM-----DAGNMLKPALARGE-------  151 (195)
T ss_dssp             HHTTTCSHHH-HHHHHHHHHHHH----HHSTTTEEEEEETGGGGTT------CC-----CCHHHHHHHHHTTS-------
T ss_pred             HhccCCccHH-HHHHHHHHHHHH----hcCCCcEEEEcchHHHHhcCCCCCCcc-----cHHHHHHHHHhCCC-------
Confidence            653 234443 344555555442    223 35799999999997653322111     15577888887543       


Q ss_pred             cccCCCCCCceeEEecCcc-eeeccCccccHHHHHHhhcccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNI-LFIAGGAFSGIENFIINRINQETNFLEKLN  202 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~-~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~  202 (225)
                                +.+|++|.. -|   ...-.-|+++.|||... ....|+.
T Consensus       152 ----------l~~IgatT~eey---~~~~e~d~aL~rrF~~I-~V~Ep~~  187 (195)
T d1jbka_         152 ----------LHCVGATTLDEY---RQYIEKDAALERRFQKV-FVAEPSV  187 (195)
T ss_dssp             ----------CCEEEEECHHHH---HHHTTTCHHHHTTEEEE-ECCCCCH
T ss_pred             ----------ceEEecCCHHHH---HHHHHcCHHHHhcCCEe-ecCCCCH
Confidence                      445555433 00   00124589999999654 3444443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=2.6e-15  Score=117.59  Aligned_cols=156  Identities=24%  Similarity=0.282  Sum_probs=100.5

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      -++|.++.++++.+.+.              ...+.++||+||||+|||++++.+|...          +..++.++.+.
T Consensus        19 ~~igRd~Ei~~l~~iL~--------------r~~k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~   84 (268)
T d1r6bx2          19 PLIGREKELERAIQVLC--------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS   84 (268)
T ss_dssp             CCCSCHHHHHHHHHHHT--------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC-
T ss_pred             cccChHHHHHHHHHHHh--------------cCccCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeech
Confidence            46899999999988771              1334689999999999999999999764          56689999887


Q ss_pred             ccc-cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCcccccc
Q psy5910          76 FTE-AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE  154 (225)
Q Consensus        76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~  154 (225)
                      +.. .+|.|+ .+..+..++...    ....+.|+||||++.+.......    .++..+-+.|...|....        
T Consensus        85 liag~~~~g~-~e~r~~~i~~~~----~~~~~iIlfiDeih~l~~~g~~~----g~~~d~a~~Lkp~L~rg~--------  147 (268)
T d1r6bx2          85 LLAGTKYRGD-FEKRFKALLKQL----EQDTNSILFIDEIHTIIGAGAAS----GGQVDAANLIKPLLSSGK--------  147 (268)
T ss_dssp             --CCCCCSSC-HHHHHHHHHHHH----SSSSCEEEEETTTTTTTTSCCSS----SCHHHHHHHHSSCSSSCC--------
T ss_pred             HhccCccchh-HHHHHHHHHHHh----hccCCceEEecchHHHhcCCCCC----CccccHHHHhhHHHhCCC--------
Confidence            754 356665 466666666654    34567899999999998653221    122334455555555322        


Q ss_pred             ccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         155 KKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       155 ~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                               +.+|++|..--.  ....+-|+++.|||.. |...+|+.++
T Consensus       148 ---------i~vIgatT~eey--~~~~e~d~al~rrF~~-I~V~Eps~e~  185 (268)
T d1r6bx2         148 ---------IRVIGSTTYQEF--SNIFEKDRALARRFQK-IDITEPSIEE  185 (268)
T ss_dssp             ---------CEEEEEECHHHH--HCCCCCTTSSGGGEEE-EECCCCCHHH
T ss_pred             ---------CeEEEeCCHHHH--HHHHhhcHHHHhhhcc-cccCCCCHHH
Confidence                     666666544100  0113468899999955 4444555443

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.48  E-value=1.4e-14  Score=112.64  Aligned_cols=106  Identities=22%  Similarity=0.364  Sum_probs=76.3

Q ss_pred             eechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccC
Q psy5910           7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVG   83 (225)
Q Consensus         7 i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g   83 (225)
                      .||++.+++.+.+.+..            +.....+|||+||+|||||++|++|+...   ..+++.+++..+..     
T Consensus         2 ~v~~S~~~~~~~~~~~~------------~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~-----   64 (247)
T d1ny5a2           2 YVFESPKMKEILEKIKK------------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPR-----   64 (247)
T ss_dssp             CCCCSHHHHHHHHHHHH------------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCH-----
T ss_pred             eEecCHHHHHHHHHHHH------------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhh-----
Confidence            47888888888776622            22344689999999999999999999876   45688888866532     


Q ss_pred             CcHHHHHHHHHHhc-----------chhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcC
Q psy5910          84 DDVESIIQKLLHEC-----------DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGV  145 (225)
Q Consensus        84 ~~~~~~~~~~~~~~-----------~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~  145 (225)
                         ......+|...           .+.+...++++|||||+|.+...             .|..|++.++..
T Consensus        65 ---~~~~~~lfg~~~~~~~~~~~~~~g~l~~a~gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~  121 (247)
T d1ny5a2          65 ---DIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLE-------------AQAKLLRVIESG  121 (247)
T ss_dssp             ---HHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHH-------------HHHHHHHHHHHS
T ss_pred             ---cccHHHhcCcccCCcCCcccccCCHHHccCCCEEEEeChHhCCHH-------------HHHHHHHHHHhC
Confidence               11122222111           12345668899999999999977             799999999753

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=99.40  E-value=5.7e-15  Score=120.82  Aligned_cols=40  Identities=23%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE   78 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~   78 (225)
                      .++.+||+||||||||++|+++|+.++.+++.+++++..+
T Consensus       153 ~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in~s~~rs  192 (362)
T d1svma_         153 KKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRL  192 (362)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTH
T ss_pred             CcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEECcchhh
Confidence            3457889999999999999999999999999999877643

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=99.40  E-value=5.3e-14  Score=115.77  Aligned_cols=154  Identities=21%  Similarity=0.251  Sum_probs=84.3

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh----------CCCeEEeccCc
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII----------NVPIIVVDATS   75 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~----------~~~~~~~~~~~   75 (225)
                      -++|.++.++++.+.+.              ...+.+++|+||||+|||+++..+|...          +..++.++.+.
T Consensus        23 ~~~gr~~ei~~~~~~L~--------------r~~k~n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~   88 (387)
T d1qvra2          23 PVIGRDEEIRRVIQILL--------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS   88 (387)
T ss_dssp             CCCSCHHHHHHHHHHHH--------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred             CCcCcHHHHHHHHHHHh--------------cCCCCCCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhh
Confidence            46899999999988772              1344689999999999999999888755          45688999887


Q ss_pred             ccc-cCccCCcHHHHHHHHHHhcchhhhhh-CCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccc
Q psy5910          76 FTE-AGYVGDDVESIIQKLLHECDYDVELA-EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLA  153 (225)
Q Consensus        76 ~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~  153 (225)
                      +.. .+|.|+- +..+..++...    ... .+.|+||||++.+.......+     +.++-+.|...|....       
T Consensus        89 l~ag~~~~g~~-e~r~~~i~~~~----~~~~~~~ilfide~h~l~~~g~~~g-----~~d~a~~Lkp~L~rg~-------  151 (387)
T d1qvra2          89 LLAGAKYRGEF-EERLKAVIQEV----VQSQGEVILFIDELHTVVGAGKAEG-----AVDAGNMLKPALARGE-------  151 (387)
T ss_dssp             ---------CH-HHHHHHHHHHH----HTTCSSEEEEECCC------------------------HHHHHTTC-------
T ss_pred             hhcccCcchhH-HHHHHHHHHHh----ccCCCceEEEeccHHHHhcCCCCCC-----cccHHHHHHHHHhCCC-------
Confidence            754 3566653 55555555443    233 356899999999986532211     1235678888887543       


Q ss_pred             cccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         154 EKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       154 ~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                                +.+|++|..--- . .++ -|+|+.|||.. |.+..|+.+.
T Consensus       152 ----------~~~I~~tT~~ey-~-~~e-~d~al~rrF~~-v~v~ep~~~~  188 (387)
T d1qvra2         152 ----------LRLIGATTLDEY-R-EIE-KDPALERRFQP-VYVDEPTVEE  188 (387)
T ss_dssp             ----------CCEEEEECHHHH-H-HHT-TCTTTCSCCCC-EEECCCCHHH
T ss_pred             ----------cceeeecCHHHH-H-Hhc-ccHHHHHhccc-ccCCCCcHHH
Confidence                      555555543110 0 133 37788889854 5555555544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.37  E-value=9.6e-13  Score=98.78  Aligned_cols=119  Identities=13%  Similarity=0.175  Sum_probs=79.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC------CCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcch
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN------VPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI  114 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi  114 (225)
                      .++||+||||||||++|..+++...      ..++.+.+..-    -.|   ...++.+.............-|++|||+
T Consensus        16 ~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~----~I~---Id~IR~i~~~~~~~~~~~~~KviIId~a   88 (198)
T d2gnoa2          16 ISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NIG---IDDIRTIKDFLNYSPELYTRKYVIVHDC   88 (198)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CBC---HHHHHHHHHHHTSCCSSSSSEEEEETTG
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcC----CCC---HHHHHHHHHHHhhCcccCCCEEEEEeCc
Confidence            4899999999999999999998772      23666655321    111   1223344433321112234469999999


Q ss_pred             hhhcccccccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc
Q psy5910         115 DKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE  194 (225)
Q Consensus       115 d~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~  194 (225)
                      |+|...             ++++|++.||+-             ..+  .+++.+|+.       .+.+.+.+++|+ ..
T Consensus        89 d~l~~~-------------aqNaLLK~LEEP-------------p~~--t~fiLit~~-------~~~ll~TI~SRC-~~  132 (198)
T d2gnoa2          89 ERMTQQ-------------AANAFLKALEEP-------------PEY--AVIVLNTRR-------WHYLLPTIKSRV-FR  132 (198)
T ss_dssp             GGBCHH-------------HHHHTHHHHHSC-------------CTT--EEEEEEESC-------GGGSCHHHHTTS-EE
T ss_pred             cccchh-------------hhhHHHHHHhCC-------------CCC--ceeeeccCC-------hhhCHHHHhcce-EE
Confidence            999977             899999999962             233  444444444       568999999996 34


Q ss_pred             cccccccc
Q psy5910         195 TNFLEKLN  202 (225)
Q Consensus       195 i~~~~~~~  202 (225)
                      +.|+.|..
T Consensus       133 i~~~~p~~  140 (198)
T d2gnoa2         133 VVVNVPKE  140 (198)
T ss_dssp             EECCCCHH
T ss_pred             EeCCCchH
Confidence            66666654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.31  E-value=7.6e-13  Score=103.33  Aligned_cols=162  Identities=9%  Similarity=0.116  Sum_probs=93.8

Q ss_pred             cceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC----CCeEEeccCcccc-
Q psy5910           4 DRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN----VPIIVVDATSFTE-   78 (225)
Q Consensus         4 ~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~----~~~~~~~~~~~~~-   78 (225)
                      -+.++|++..++.+.+.+....++.        ..+.+++||+||||||||++++++++.+.    ..++.+++..... 
T Consensus        15 p~~l~~Re~ei~~l~~~l~~~l~~~--------~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~   86 (276)
T d1fnna2          15 PKRLPHREQQLQQLDILLGNWLRNP--------GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNF   86 (276)
T ss_dssp             CSCCTTCHHHHHHHHHHHHHHHHST--------TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHhCC--------CCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhhhhh
Confidence            3567899999999988774332211        12346899999999999999999999883    3455555533211 


Q ss_pred             --------------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910          79 --------------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        79 --------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                                    ....+.........+....   .......++++|+++.+...             ....+..+++.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~~-------------~~~~~~~~~~~  150 (276)
T d1fnna2          87 TAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL---RERDLYMFLVLDDAFNLAPD-------------ILSTFIRLGQE  150 (276)
T ss_dssp             HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH---HHTTCCEEEEEETGGGSCHH-------------HHHHHHHHTTC
T ss_pred             hhhhhhhHHhhhhhhhhhccchhHHHHHHHHHH---hhcccccccchhHHHHhhhh-------------hhhhHHHHHhc
Confidence                          0122223222222222221   12235678889999988765             33444444332


Q ss_pred             CCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccc-cccccccccc
Q psy5910         145 VNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQE-TNFLEKLNNN  204 (225)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~-i~~~~~~~~~  204 (225)
                      ....         ....  +.+|.+++..-    ..+.+++.+.+|+... |.|+.++.++
T Consensus       151 ~~~~---------~~~~--~~~i~~~~~~~----~~~~~~~~~~~r~~~~~i~~~~~~~~e  196 (276)
T d1fnna2         151 ADKL---------GAFR--IALVIVGHNDA----VLNNLDPSTRGIMGKYVIRFSPYTKDQ  196 (276)
T ss_dssp             HHHH---------SSCC--EEEEEEESSTH----HHHTSCHHHHHHHTTCEEECCCCBHHH
T ss_pred             cccc---------cccc--eEEeecCCchh----hhhhcchhhhhhhcchhccccchhHHH
Confidence            1000         0111  45555555410    1245678888887655 8898888876

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.23  E-value=5.3e-12  Score=98.94  Aligned_cols=174  Identities=11%  Similarity=0.030  Sum_probs=90.3

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhC---------CCeEEeccCc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN---------VPIIVVDATS   75 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~---------~~~~~~~~~~   75 (225)
                      +.+.|.+..++.|...+.....+..     ........++++||||||||++++++++.+.         ..+..+++..
T Consensus        16 ~~~~~Re~e~~~l~~~l~~~~~~~~-----~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~   90 (287)
T d1w5sa2          16 PELRVRRGEAEALARIYLNRLLSGA-----GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN   90 (287)
T ss_dssp             SSCSSSCHHHHHHHHHHHHHHHTSS-----CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHcCC-----CCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeecccc
Confidence            4577888888887765532221110     0101112356789999999999999998872         2234444433


Q ss_pred             ccc---------------cCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHH
Q psy5910          76 FTE---------------AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLK  140 (225)
Q Consensus        76 ~~~---------------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~  140 (225)
                      ...               ..+.+.........+....   .......++++||+|.+....+       ........+..
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~iide~d~l~~~~~-------~~~~~~~~l~~  160 (287)
T d1w5sa2          91 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL---YVENHYLLVILDEFQSMLSSPR-------IAAEDLYTLLR  160 (287)
T ss_dssp             CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHH---HHHTCEEEEEEESTHHHHSCTT-------SCHHHHHHHHT
T ss_pred             ccchhhHHHHHhhhcccccccccchHHHHHHHHHHHH---HhccCccccceeEEEEeccccc-------cchhHHHHHHH
Confidence            211               0122333222222222211   1223567889999999975532       12234555555


Q ss_pred             HHhcCCcCccccccccCCCCCCceeEEecCcceeeccCccccHHHHHHhhcccccccccccccc
Q psy5910         141 LIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNN  204 (225)
Q Consensus       141 ~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~i~~~~~~~l~~al~~Rf~~~i~~~~~~~~~  204 (225)
                      +++......        ....  ..+|..+|...... ......+.+.+||...+.|+.++.++
T Consensus       161 l~~~l~~~~--------~~~~--~~~i~i~~~~~~~~-~~~~~~~~~~~r~~~~i~f~~y~~~e  213 (287)
T d1w5sa2         161 VHEEIPSRD--------GVNR--IGFLLVASDVRALS-YMREKIPQVESQIGFKLHLPAYKSRE  213 (287)
T ss_dssp             HHHHSCCTT--------SCCB--EEEEEEEEETHHHH-HHHHHCHHHHTTCSEEEECCCCCHHH
T ss_pred             HHHhcchhh--------cccc--eeEEeecccHHHHH-HHHhhccchhcccceeeeccCCcHHH
Confidence            554321110        0111  44444444311000 01223467778888889999998876

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.11  E-value=3.3e-11  Score=91.27  Aligned_cols=86  Identities=20%  Similarity=0.351  Sum_probs=53.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI  117 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l  117 (225)
                      .+++|+||||||||.|++++++.+   +..+++++...+... +...-.......+..      ....-.+++||+++.+
T Consensus        37 n~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~dll~iDDi~~i  109 (213)
T d1l8qa2          37 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-MVEHLKKGTINEFRN------MYKSVDLLLLDDVQFL  109 (213)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHH-HHHHHHHTCHHHHHH------HHHTCSEEEEECGGGG
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHHH-HHHHHHccchhhHHH------HHhhccchhhhhhhhh
Confidence            358899999999999999999987   456666666554220 000000000011111      1235689999999999


Q ss_pred             cccccccCCCCCChHHHHHHHHHHHhc
Q psy5910         118 SKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                      ..+           ...+..|..+++.
T Consensus       110 ~~~-----------~~~~~~lf~lin~  125 (213)
T d1l8qa2         110 SGK-----------ERTQIEFFHIFNT  125 (213)
T ss_dssp             TTC-----------HHHHHHHHHHHHH
T ss_pred             cCc-----------hHHHHHHHHHHHH
Confidence            755           2256667777764

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.02  E-value=6.7e-11  Score=92.20  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=34.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE   78 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~   78 (225)
                      .++||+||||||||++|++||+.++.+++.++++++..
T Consensus        33 ~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_          33 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            47999999999999999999999999999999987754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.80  E-value=4.9e-08  Score=75.40  Aligned_cols=55  Identities=18%  Similarity=0.288  Sum_probs=44.7

Q ss_pred             ceeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCccc
Q psy5910           5 RHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT   77 (225)
Q Consensus         5 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~   77 (225)
                      +.++|.++.++.|...                  ..+.++++||+|+|||+|++.+++..+..+..+++....
T Consensus        12 ~~f~GR~~el~~l~~~------------------~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~~~~~~   66 (283)
T d2fnaa2          12 KDFFDREKEIEKLKGL------------------RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFE   66 (283)
T ss_dssp             GGSCCCHHHHHHHHHT------------------CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGT
T ss_pred             hhCCChHHHHHHHHhc------------------cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEEecccc
Confidence            5678999998888652                  224788999999999999999999999988888775543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.80  E-value=1.2e-08  Score=74.12  Aligned_cols=26  Identities=31%  Similarity=0.590  Sum_probs=23.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      +|+|+||||||||||++.++..++.+
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCC
Confidence            58899999999999999999988543

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.74  E-value=7e-08  Score=73.14  Aligned_cols=46  Identities=24%  Similarity=0.576  Sum_probs=40.5

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|+....++++++..+.+.++ |.||+|||||||.+.++...
T Consensus         4 ~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2           4 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            34566778888899999999999888 99999999999999999776

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=7e-09  Score=73.97  Aligned_cols=32  Identities=41%  Similarity=0.671  Sum_probs=28.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      ++|+|+|||||||||+|+.||+.++.+++...
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~   34 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD   34 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence            47899999999999999999999999886543

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.55  E-value=2e-08  Score=72.29  Aligned_cols=31  Identities=45%  Similarity=0.559  Sum_probs=28.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      +.++|.|||||||||+|+.|++.++.+++..
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~i~~   35 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKYINV   35 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcEEec
Confidence            4788999999999999999999999988754

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.54  E-value=1.8e-08  Score=73.30  Aligned_cols=33  Identities=21%  Similarity=0.378  Sum_probs=29.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      +.|+|.|||||||||+|++||+.++.+++....
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~   40 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYG   40 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCeEeeeh
Confidence            478999999999999999999999988876554

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.50  E-value=3.8e-08  Score=70.88  Aligned_cols=32  Identities=34%  Similarity=0.559  Sum_probs=28.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      ++++|+|+|||||||+++.+|+.++.+|+..+
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~~fiD~D   33 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD   33 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCeEeec
Confidence            36888899999999999999999999988654

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.49  E-value=3e-08  Score=71.62  Aligned_cols=35  Identities=29%  Similarity=0.530  Sum_probs=31.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      -|+|.|||||||||+|+.+++.++.+++.++...+
T Consensus         6 iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~   40 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL   40 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHH
Confidence            45699999999999999999999999999987654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.45  E-value=5.1e-08  Score=69.97  Aligned_cols=31  Identities=32%  Similarity=0.594  Sum_probs=28.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      +++|+|+||+||||+++.+|+.++.+|+..+
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~~~~~d~d   32 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD   32 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhCCCEEecC
Confidence            6889999999999999999999999988654

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=98.42  E-value=6.6e-08  Score=69.91  Aligned_cols=31  Identities=29%  Similarity=0.589  Sum_probs=27.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .+++|.|+|||||||+|+.+|+.+|.+++..
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~   33 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFVDT   33 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEEeh
Confidence            3678999999999999999999999988754

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=98.38  E-value=1.4e-07  Score=67.87  Aligned_cols=33  Identities=24%  Similarity=0.452  Sum_probs=28.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      +-|+|.|+||+||||+|+.|++.++.+++.++.
T Consensus         4 kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~   36 (178)
T d1qhxa_           4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV   36 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCCeEEeec
Confidence            456799999999999999999999988877653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.32  E-value=1.7e-07  Score=67.20  Aligned_cols=30  Identities=23%  Similarity=0.458  Sum_probs=25.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      ++|.|||||||||+|+.|++.++.+++..+
T Consensus         9 ivl~G~~GsGKsT~a~~La~~l~~~~~~~d   38 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGD   38 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHHHHTCEEEEGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeechh
Confidence            448999999999999999999988766543

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.29  E-value=4.3e-07  Score=69.05  Aligned_cols=46  Identities=24%  Similarity=0.606  Sum_probs=41.0

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|+...++++.++..+.+.++ |.||+||||||+++.++...
T Consensus         7 ~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912           7 VDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             EeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCC
Confidence            45677778888899999999999888 99999999999999999776

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=98.29  E-value=2e-07  Score=66.74  Aligned_cols=28  Identities=29%  Similarity=0.495  Sum_probs=24.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      -++|.|||||||||+|+.|++.++..++
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~~~~~~~   31 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQLDNSAY   31 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSSEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence            4679999999999999999999876543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.26  E-value=3.6e-07  Score=66.33  Aligned_cols=30  Identities=27%  Similarity=0.514  Sum_probs=26.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      +|+|.|||||||||+|+.||+.+|.+++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i~~   31 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHIST   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceech
Confidence            478999999999999999999998876653

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.4e-07  Score=66.92  Aligned_cols=24  Identities=29%  Similarity=0.772  Sum_probs=22.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ++|+|+|||||||||+++.+++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            589999999999999999999887

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.26  E-value=3.1e-07  Score=65.98  Aligned_cols=27  Identities=37%  Similarity=0.539  Sum_probs=24.1

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      ..+|+|.|||||||||+|+.|++.++.
T Consensus         5 ~~~I~i~G~~GsGKTT~~~~La~~l~~   31 (174)
T d1y63a_           5 GINILITGTPGTGKTSMAEMIAAELDG   31 (174)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHhCC
Confidence            347889999999999999999999864

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.24  E-value=2.6e-07  Score=67.75  Aligned_cols=29  Identities=14%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      ..++|.|||||||||+|+.|++.++.+++
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~~~~~i   32 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKYQLAHI   32 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHCCcEE
Confidence            46889999999999999999999987654

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.24  E-value=6.1e-07  Score=68.07  Aligned_cols=47  Identities=23%  Similarity=0.552  Sum_probs=41.4

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|+...++++.++..+.+.++ |.||+|||||||.+.++....
T Consensus        10 ~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~   57 (239)
T d1v43a3          10 ENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE   57 (239)
T ss_dssp             EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred             EEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence            35667778888999999999999888 999999999999999998773

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.23  E-value=3.9e-07  Score=66.77  Aligned_cols=30  Identities=33%  Similarity=0.451  Sum_probs=25.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      ..++|.|||||||||+|+.||+.+|.+++.
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~g~~~i~   33 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLA   33 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            367789999999999999999999876544

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.22  E-value=2.6e-06  Score=65.31  Aligned_cols=47  Identities=26%  Similarity=0.449  Sum_probs=38.2

Q ss_pred             eeeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+.+.|..  ...++++++..+++..+ ++||+|||||||++.++..+.
T Consensus        20 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~   69 (255)
T d2hyda1          20 DHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD   69 (255)
T ss_dssp             EEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred             EEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC
Confidence            456666643  45788999999998777 999999999999999997763

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.21  E-value=4.4e-07  Score=65.98  Aligned_cols=30  Identities=37%  Similarity=0.667  Sum_probs=26.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      +++|.|||||||||+|+.|++.++...+..
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~   31 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQIST   31 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEch
Confidence            578999999999999999999998876654

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=1.6e-05  Score=58.94  Aligned_cols=74  Identities=24%  Similarity=0.445  Sum_probs=44.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------------------CccCCcHHHHHHHHHHhcchhh
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------------------GYVGDDVESIIQKLLHECDYDV  101 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~  101 (225)
                      ++|+||+|+||||.+-.+|..+   +..+..+++......                  ...+.+....+......+    
T Consensus        12 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~~~~l~~~~~~a----   87 (211)
T d2qy9a2          12 ILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA----   87 (211)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCHHHHHHHHHHHH----
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCHHHHHHHHHHHH----
Confidence            4499999999999777777665   666777777554321                  122233333333333221    


Q ss_pred             hhhCCCEEEEcchhhhccc
Q psy5910         102 ELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus       102 ~~~~~~vl~iDEid~l~~~  120 (225)
                      .....-+++||=+.+...+
T Consensus        88 ~~~~~d~ilIDTaGr~~~d  106 (211)
T d2qy9a2          88 KARNIDVLIADTAGRLQNK  106 (211)
T ss_dssp             HHTTCSEEEECCCCCGGGH
T ss_pred             HHcCCCEEEeccCCCcccc
Confidence            2234568999987766544

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.18  E-value=7.1e-07  Score=64.91  Aligned_cols=30  Identities=30%  Similarity=0.485  Sum_probs=26.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .|+|.|||||||||+|+.||+.++.+++..
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~   31 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHIST   31 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeH
Confidence            478999999999999999999998876653

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.18  E-value=8.1e-07  Score=68.36  Aligned_cols=45  Identities=16%  Similarity=0.401  Sum_probs=40.0

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|+...+++++++..+.+.++ |+||+|||||||+++|+...
T Consensus         7 nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~   52 (258)
T d1b0ua_           7 DLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLE   52 (258)
T ss_dssp             EEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            4566677888899999999999999 99999999999999999766

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.17  E-value=4.8e-07  Score=65.06  Aligned_cols=24  Identities=29%  Similarity=0.508  Sum_probs=21.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .|+|+|+|||||||+|++|++.++
T Consensus         8 ~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           8 TIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            466999999999999999999984

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.16  E-value=1.6e-05  Score=59.01  Aligned_cols=38  Identities=32%  Similarity=0.547  Sum_probs=26.9

Q ss_pred             eCCcE-EEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          39 EKSNI-LLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        39 ~~~~v-Ll~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      ..+.| +|+||+|+||||.+-.+|..+   +..+..+++...
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~   50 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF   50 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeeccc
Confidence            34445 499999999999777777655   566666666544

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=98.16  E-value=5.8e-07  Score=66.04  Aligned_cols=29  Identities=14%  Similarity=0.268  Sum_probs=24.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      -|++.||||+||||+|+.||+.+|.+.+.
T Consensus         8 iI~i~G~pGSGKsT~a~~La~~~g~~~i~   36 (194)
T d1qf9a_           8 VVFVLGGPGSGKGTQCANIVRDFGWVHLS   36 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence            45699999999999999999999875443

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.13  E-value=8e-07  Score=65.23  Aligned_cols=29  Identities=17%  Similarity=0.350  Sum_probs=25.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      -.++|.||||+||||+|+.||+.+|.+++
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g~~~i   35 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFELKHL   35 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBCCEEE
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHCCeEE
Confidence            47889999999999999999999986554

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=1e-06  Score=63.81  Aligned_cols=29  Identities=24%  Similarity=0.410  Sum_probs=25.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      .++|.||||+||||+|+.|++.++..++.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i~   30 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQIS   30 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence            57899999999999999999999887654

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=2e-05  Score=58.27  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=27.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFT   77 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~   77 (225)
                      +-++|+||+|+||||.+-.+|..+   +..+..+++....
T Consensus         7 ~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   46 (207)
T d1okkd2           7 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR   46 (207)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence            456699999999999877677666   5666666665543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=7.4e-07  Score=65.57  Aligned_cols=29  Identities=24%  Similarity=0.334  Sum_probs=24.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      -++|.||||+||||+|+.|++.+|.+++.
T Consensus        10 iI~i~GppGSGKsT~a~~La~~~g~~~is   38 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVKDYSFVHLS   38 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence            45599999999999999999999775544

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.11  E-value=1.5e-06  Score=66.18  Aligned_cols=46  Identities=22%  Similarity=0.467  Sum_probs=41.1

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|+...++++.++..+++.++ |.||+|+||||+.++++..+
T Consensus        10 ~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          10 QSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             EEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             eeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            34667778888999999999999998 99999999999999999876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=1e-06  Score=64.02  Aligned_cols=30  Identities=23%  Similarity=0.505  Sum_probs=25.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      .++|.|||||||||+|+.||+.++.+.+..
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~g~~~i~~   33 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERFHAAHLAT   33 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceEec
Confidence            578899999999999999999998765443

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.08  E-value=1.2e-06  Score=66.56  Aligned_cols=46  Identities=26%  Similarity=0.518  Sum_probs=38.6

Q ss_pred             eeeEecc--cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHY--KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~--~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+...|  +...+++++++..+.+.++ |.||+||||||+.+.++...
T Consensus         7 ~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2           7 KNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             EeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3455555  4567789999999998888 99999999999999999876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.8e-07  Score=67.47  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      -|+|+|+||+||||+|+.|++.++.
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4559999999999999999998854

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.06  E-value=1.3e-06  Score=64.12  Aligned_cols=28  Identities=21%  Similarity=0.352  Sum_probs=24.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      -|+|.|||||||||+|+.|++.+|.+.+
T Consensus        10 iI~l~G~pGSGKsT~a~~La~~~g~~~i   37 (194)
T d3adka_          10 IIFVVGGPGSGKGTQCEKIVQKYGYTHL   37 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHTCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            4669999999999999999999876543

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.05  E-value=2.1e-06  Score=65.95  Aligned_cols=47  Identities=17%  Similarity=0.486  Sum_probs=41.3

Q ss_pred             eeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+...|+..+++++.++..+++.++ |.||+|+|||||++.|+..+.
T Consensus         8 ~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~   55 (254)
T d1g6ha_           8 ENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK   55 (254)
T ss_dssp             EEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc
Confidence            34566778888999999999999988 999999999999999998763

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.3e-06  Score=64.04  Aligned_cols=28  Identities=14%  Similarity=0.309  Sum_probs=24.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      -|+|.||||+||||.|+.||+.+|...+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~g~~~i   30 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKYGYTHL   30 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceE
Confidence            4679999999999999999999976543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=98.04  E-value=3.2e-06  Score=61.98  Aligned_cols=27  Identities=22%  Similarity=0.464  Sum_probs=23.4

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      +..++|+|||+||||++|.+|++.++.
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~G   79 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQG   79 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhCC
Confidence            345669999999999999999999864

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.04  E-value=1.7e-06  Score=65.29  Aligned_cols=37  Identities=24%  Similarity=0.633  Sum_probs=32.9

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++++++..+.+.++ |.||+|||||||.+.++...
T Consensus        18 ~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~   55 (230)
T d1l2ta_          18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLD   55 (230)
T ss_dssp             EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             EEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCC
Confidence            34688899999999888 99999999999999999766

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.04  E-value=1.8e-06  Score=65.05  Aligned_cols=45  Identities=27%  Similarity=0.522  Sum_probs=37.2

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+...|+.. .++++++..+.+.++ |.||+||||||+.+.++....
T Consensus         6 nlsk~y~~~-aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~   51 (229)
T d3d31a2           6 SLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV   51 (229)
T ss_dssp             EEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred             EEEEEeCCE-EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence            345555553 678899999999888 999999999999999998763

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.02  E-value=2.5e-06  Score=64.77  Aligned_cols=48  Identities=25%  Similarity=0.493  Sum_probs=42.9

Q ss_pred             eeeeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          18 SVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        18 ~~~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+.+...|+....+++.++....+.++ |.||+|+|||||.+.++..+.
T Consensus         5 v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~   53 (238)
T d1vpla_           5 VKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK   53 (238)
T ss_dssp             EEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             EEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence            456777888889999999999999999 999999999999999998773

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.02  E-value=2.1e-06  Score=65.11  Aligned_cols=37  Identities=16%  Similarity=0.438  Sum_probs=33.3

Q ss_pred             eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          28 LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        28 ~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..++++.++..+.+.++ |.||+|||||||++.|+...
T Consensus        18 ~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             EEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             EEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence            35688999999998888 99999999999999999776

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.01  E-value=1.9e-06  Score=63.80  Aligned_cols=44  Identities=30%  Similarity=0.574  Sum_probs=36.8

Q ss_pred             eeEecccceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        20 ~l~~~~~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+...|.. +.+++.++..+++.++ |.||+|||||||.+.++..+
T Consensus         7 ~ls~~y~~-~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_           7 DLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             EEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEeCC-eEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhccc
Confidence            34555544 5788899999999888 99999999999999999876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.01  E-value=2.5e-06  Score=64.88  Aligned_cols=47  Identities=19%  Similarity=0.456  Sum_probs=39.0

Q ss_pred             eeeEecc--cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHY--KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~--~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+.+.|  .....++++++..+++..+ ++||+|+|||||++.++..+.
T Consensus         5 ~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~   54 (241)
T d2pmka1           5 RNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI   54 (241)
T ss_dssp             EEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4566666  3456789999999998877 999999999999999998774

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.9e-06  Score=64.26  Aligned_cols=27  Identities=30%  Similarity=0.561  Sum_probs=23.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPI   68 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~   68 (225)
                      -|.+.|||||||+|+|+.|++.+|.++
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~   31 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHL   31 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcE
Confidence            345889999999999999999998755

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.97  E-value=4.6e-05  Score=56.33  Aligned_cols=34  Identities=32%  Similarity=0.350  Sum_probs=26.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      ++|+||+|+||||.+-.+|..+   +..+..+++...
T Consensus        13 i~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~   49 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ   49 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccc
Confidence            4589999999999877777666   666666766544

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.96  E-value=1.9e-06  Score=65.65  Aligned_cols=46  Identities=22%  Similarity=0.380  Sum_probs=38.2

Q ss_pred             eeeEecccc-eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          19 VGVYNHYKR-LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        19 ~~l~~~~~~-~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.+.+.|.. ...++++++..+++.++ ++||+|||||||++.++..+
T Consensus         5 knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_           5 RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             EEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            456666643 45678899999998877 99999999999999999876

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.96  E-value=2.1e-06  Score=60.09  Aligned_cols=34  Identities=18%  Similarity=0.303  Sum_probs=25.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      -|++.||||+||||+|+.+++... .+..++..++
T Consensus         4 lIii~G~pGsGKTTla~~L~~~~~-~~~~~~~d~~   37 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY   37 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC-CCEEechHHH
Confidence            356899999999999999876643 3566655444

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.96  E-value=2.9e-06  Score=63.38  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=23.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      |.+.|||||||||+|+.||+.+|.+++
T Consensus         6 IaIdGp~GsGKgT~ak~La~~lg~~~i   32 (223)
T d1q3ta_           6 IAIDGPASSGKSTVAKIIAKDFGFTYL   32 (223)
T ss_dssp             EEEECSSCSSHHHHHHHHHHHHCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence            447799999999999999999988643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.94  E-value=1.9e-06  Score=62.89  Aligned_cols=23  Identities=26%  Similarity=0.518  Sum_probs=20.5

Q ss_pred             EE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          43 IL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        43 vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ++ +.||+|+||||+|+.|++.++
T Consensus        24 iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          24 VLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            44 999999999999999998774

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.92  E-value=2.8e-06  Score=65.11  Aligned_cols=48  Identities=21%  Similarity=0.364  Sum_probs=38.8

Q ss_pred             eeeeEecccc--eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          18 SVGVYNHYKR--LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        18 ~~~l~~~~~~--~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+.+.+.|..  ...++++++..+++.++ |+||+|||||||++.++..+.
T Consensus        16 ~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~   66 (253)
T d3b60a1          16 FRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD   66 (253)
T ss_dssp             EEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred             EEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC
Confidence            3456666643  45688999999998777 999999999999999998763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=2.4e-06  Score=61.68  Aligned_cols=34  Identities=18%  Similarity=0.322  Sum_probs=25.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF   76 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~   76 (225)
                      .-|++.|+|||||||+|+.++...+.  ..++..++
T Consensus        15 ~liil~G~pGsGKST~a~~l~~~~~~--~~i~~D~~   48 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLVSAGY--VHVNRDTL   48 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTGGGTC--EEEEHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhcCC--EEEchHHH
Confidence            34569999999999999999887664  45555444

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.88  E-value=7.7e-05  Score=55.98  Aligned_cols=33  Identities=36%  Similarity=0.450  Sum_probs=25.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      .-++++||||||||++|..++...   +..+.+++.
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~   62 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVENACANKERAILFAY   62 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeec
Confidence            356699999999999999888765   555666654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.1e-06  Score=64.75  Aligned_cols=47  Identities=26%  Similarity=0.468  Sum_probs=37.8

Q ss_pred             eeeEecccc---eEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          19 VGVYNHYKR---LFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        19 ~~l~~~~~~---~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +.+.+.|..   ...++++++..+++.++ ++||+|||||||++.+...+.
T Consensus        15 ~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~   65 (251)
T d1jj7a_          15 QDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ   65 (251)
T ss_dssp             EEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred             EEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence            345666643   23678899999998777 999999999999999998773

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.86  E-value=1.3e-05  Score=59.55  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=30.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccCcccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII----NVPIIVVDATSFTE   78 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~~~~~   78 (225)
                      -|+|+|.||+||||+|+.|++.+    +.+++.+++..+..
T Consensus        26 vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~   66 (208)
T d1m7ga_          26 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF   66 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence            35599999999999999998765    67888898877653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.86  E-value=7e-05  Score=55.42  Aligned_cols=34  Identities=32%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      ++|+||+|+||||.+-.+|..+   +..+..+++...
T Consensus        15 i~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~   51 (211)
T d1j8yf2          15 IMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVY   51 (211)
T ss_dssp             EEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCS
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeecc
Confidence            4489999999999776666655   556666666544

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=4.8e-06  Score=59.13  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=23.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEe
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVV   71 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~   71 (225)
                      -+.++|+||||||||++.+++.+   |..+..+
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~   36 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLI   36 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence            45599999999999999999876   4444443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.80  E-value=5.6e-06  Score=59.58  Aligned_cols=24  Identities=17%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -|+|.|+|||||||+++.|++.++
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            467999999999999999999884

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=9.4e-06  Score=59.32  Aligned_cols=30  Identities=27%  Similarity=0.442  Sum_probs=25.3

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      ++|+|+||||+|||++++.+++..+..+..
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~   30 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGF   30 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCceeE
Confidence            368899999999999999999988655543

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.78  E-value=5.8e-06  Score=64.29  Aligned_cols=40  Identities=30%  Similarity=0.447  Sum_probs=35.3

Q ss_pred             cceEeecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHhC
Q psy5910          26 KRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        26 ~~~~~~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .+.+.++++++..+++.++ |+||+|||||||++.|+..+.
T Consensus        47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~   87 (281)
T d1r0wa_          47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE   87 (281)
T ss_dssp             TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred             CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc
Confidence            4456789999999998888 999999999999999998773

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=1.1e-05  Score=58.79  Aligned_cols=29  Identities=28%  Similarity=0.429  Sum_probs=24.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      ++|+|+||||+|||+|++.+++.....+.
T Consensus         2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~   30 (186)
T d1gkya_           2 RPIVISGPSGTGKSTLLKKLFAEYPDSFG   30 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHCTTTEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCccee
Confidence            46899999999999999999998765443

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=8.3e-06  Score=60.07  Aligned_cols=32  Identities=31%  Similarity=0.511  Sum_probs=25.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      |+++|.||+||||+|++|++.+   +.+...++..
T Consensus         5 i~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D   39 (213)
T d1bifa1           5 IVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVG   39 (213)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEccc
Confidence            5599999999999999999877   4445555543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=97.66  E-value=0.00011  Score=50.11  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=24.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      +..++.+|+|+|||+++-.+....+...+.+.+
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~~~~vli~~P   41 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNP   41 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTTTCCEEEEES
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHcCCcEEEEcC
Confidence            467899999999999886666666666665544

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.59  E-value=1.5e-05  Score=57.40  Aligned_cols=24  Identities=21%  Similarity=0.463  Sum_probs=21.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      ++|.|+||+||||+++.+++.++.
T Consensus         4 ivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHH
Confidence            568999999999999999998843

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.54  E-value=0.00028  Score=54.03  Aligned_cols=116  Identities=16%  Similarity=0.236  Sum_probs=59.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCcccccCccCCcHHHHHHHHHHhcchhhhhhCCCEEEEcchhhhcccc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKT  121 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~  121 (225)
                      -++|+||++||||+++.+|++.+|. +..++...   +.|.                 .......-++++||...-. . 
T Consensus       106 ~~~l~G~~~tGKS~f~~~i~~~lg~-~~~~~~~~---~~f~-----------------l~~l~~k~~~~~~e~~~~~-~-  162 (267)
T d1u0ja_         106 TIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTN---ENFP-----------------FNDCVDKMVIWWEEGKMTA-K-  162 (267)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTC---SSCT-----------------TGGGSSCSEEEECSCCEET-T-
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhcc-hhhccccC---CCcc-----------------ccccCCCEEEEEeCCCccc-c-
Confidence            4559999999999999999999865 32222111   0110                 0122356799999976422 2 


Q ss_pred             cccCCCCCChHHHHHHHHHHHhcCCcCccccccccCCCCCCceeEEecCccee-eccCc--cccHHHHHHhhccc
Q psy5910         122 DVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILF-IAGGA--FSGIENFIINRINQ  193 (225)
Q Consensus       122 ~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~i~ttn~~~-i~~~~--~~~l~~al~~Rf~~  193 (225)
                                  ..+.+-.++++-..++............ ...+|.+.|.+- +...+  ..+=+.++.||+..
T Consensus       163 ------------~~~~~K~l~gGd~i~v~~K~k~~~~~~~-~p~li~s~n~i~~~~~~~~~~~~~~~~l~~R~~~  224 (267)
T d1u0ja_         163 ------------VVESAKAILGGSKVRVDQKCKSSAQIDP-TPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFK  224 (267)
T ss_dssp             ------------THHHHHHHHTTCCEEC------CCEECC-CCEEEEESSCTTCEEETTEEECTTHHHHHTTEEE
T ss_pred             ------------HHHHHHHhcCCCceEeecccCCCcEeeC-CeEEEEeCCCcccccCCCccccccchHhhhhEEE
Confidence                        2355667777755554433222111111 123344443321 11111  23447899998633

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.52  E-value=5.2e-05  Score=59.93  Aligned_cols=28  Identities=32%  Similarity=0.552  Sum_probs=24.5

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      .+.++|+.||+|+||||+.+++....+.
T Consensus       165 ~~~nili~G~tgSGKTT~l~al~~~i~~  192 (323)
T d1g6oa_         165 IGKNVIVCGGTGSGKTTYIKSIMEFIPK  192 (323)
T ss_dssp             HTCCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred             hCCCEEEEeeccccchHHHHHHhhhccc
Confidence            4468999999999999999999988843

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.44  E-value=8.2e-05  Score=56.05  Aligned_cols=31  Identities=29%  Similarity=0.663  Sum_probs=24.8

Q ss_pred             ccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          33 SKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        33 ~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.++.... .++ |.||+||||||+.+.|+..+
T Consensus        17 ~vs~~~~~-e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          17 NVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             EEEEEECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEeCC-EEEEEECCCCChHHHHHHHHHcCC
Confidence            35555543 455 99999999999999999877

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.43  E-value=4.7e-05  Score=54.91  Aligned_cols=24  Identities=33%  Similarity=0.617  Sum_probs=21.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      -++|.||||+||||+++.+.+...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCC
Confidence            356999999999999999998864

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=0.00075  Score=51.45  Aligned_cols=79  Identities=22%  Similarity=0.345  Sum_probs=46.8

Q ss_pred             eeCCcEE-EEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc------C-------cc-CCcHHHHHHHHHHhcch
Q psy5910          38 LEKSNIL-LVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA------G-------YV-GDDVESIIQKLLHECDY   99 (225)
Q Consensus        38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------~-------~~-g~~~~~~~~~~~~~~~~   99 (225)
                      .+.+.+. |+||||||||++|-.++...   +..+++++...-.+.      +       |. -...+..+    +....
T Consensus        51 i~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~----~~i~~  126 (263)
T d1u94a1          51 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQAL----EICDA  126 (263)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHH----HHHHH
T ss_pred             ccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHH----HHHHH
Confidence            4445555 99999999999998777655   566777776532110      0       00 11122222    11112


Q ss_pred             hhhhhCCCEEEEcchhhhccc
Q psy5910         100 DVELAEQSIIYIDEIDKISKK  120 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~  120 (225)
                      ..+.....++++|=+..+.++
T Consensus       127 l~~~~~~~liViDSi~al~~~  147 (263)
T d1u94a1         127 LARSGAVDVIVVDSVAALTPK  147 (263)
T ss_dssp             HHHHTCCSEEEEECGGGCCCH
T ss_pred             HHhcCCCCEEEEECccccccc
Confidence            233456789999999888653

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.38  E-value=0.00031  Score=53.83  Aligned_cols=81  Identities=15%  Similarity=0.263  Sum_probs=49.5

Q ss_pred             eeCCcEE-EEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcccccC--------------ccCCcHHHHHHHHHHhcch
Q psy5910          38 LEKSNIL-LVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEAG--------------YVGDDVESIIQKLLHECDY   99 (225)
Q Consensus        38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~~--------------~~g~~~~~~~~~~~~~~~~   99 (225)
                      .+.+.+. ++||+|||||++|-.++...   +..+++++...-.+..              +...+.+..+.    ....
T Consensus        54 ip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~----~~~~  129 (268)
T d1xp8a1          54 IPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALE----IMEL  129 (268)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHH----HHHH
T ss_pred             ccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHH----HHHH
Confidence            4455566 99999999999998777655   6677888775322110              01112222222    1112


Q ss_pred             hhhhhCCCEEEEcchhhhccccc
Q psy5910         100 DVELAEQSIIYIDEIDKISKKTD  122 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~~~  122 (225)
                      .++.....++++|=+..+.++.+
T Consensus       130 l~~~~~~~liIiDSi~al~~r~e  152 (268)
T d1xp8a1         130 LVRSGAIDVVVVDSVAALTPRAE  152 (268)
T ss_dssp             HHTTTCCSEEEEECTTTCCCSTT
T ss_pred             HHhcCCCcEEEEecccccccHHH
Confidence            23344678999999999886544

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=5.2e-05  Score=55.99  Aligned_cols=23  Identities=17%  Similarity=0.398  Sum_probs=20.9

Q ss_pred             EEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          45 LVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      +.|++|+||||+|+.|++.++..
T Consensus         7 I~G~~gSGKSTla~~L~~~l~~~   29 (213)
T d1uj2a_           7 VSGGTASGKSSVCAKIVQLLGQN   29 (213)
T ss_dssp             EECSTTSSHHHHHHHHHHHTTGG
T ss_pred             EECCCCCCHHHHHHHHHHHhchh
Confidence            89999999999999999998643

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.37  E-value=0.00096  Score=49.16  Aligned_cols=32  Identities=28%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH----hCCCeEEecc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI----INVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~----~~~~~~~~~~   73 (225)
                      -++|+|+||+|||++|..++..    .+..+++++.
T Consensus        28 ~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~   63 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF   63 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccc
Confidence            4559999999999998765432    2455666554

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=4.4e-05  Score=57.48  Aligned_cols=34  Identities=32%  Similarity=0.542  Sum_probs=29.8

Q ss_pred             ecccceeeeCCcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        31 ~~~~~~~~~~~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.++++..+.+.++ |.||+|+|||||.+.++...
T Consensus        15 l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~   49 (231)
T d1l7vc_          15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT   49 (231)
T ss_dssp             SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC
T ss_pred             ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence            55678889999888 99999999999999999754

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.34  E-value=3.2e-05  Score=59.85  Aligned_cols=48  Identities=15%  Similarity=0.116  Sum_probs=33.7

Q ss_pred             eeechhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910           6 HIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus         6 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .++|.+..++.+.+.+...-.           .....|.|+|+.|+||||||+.+.+..
T Consensus        21 ~~~gR~~~~~~i~~~L~~~~~-----------~~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          21 TCYIREYHVDRVIKKLDEMCD-----------LDSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             CSCCCHHHHHHHHHHHHHHTT-----------SSSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceeCcHHHHHHHHHHHHhccC-----------CCceEEEEECCCCCCHHHHHHHHHHhh
Confidence            467888888888776621110           112245599999999999999998763

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=8.4e-05  Score=53.52  Aligned_cols=28  Identities=21%  Similarity=0.368  Sum_probs=22.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCe
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPI   68 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~   68 (225)
                      +.++|.||+|+|||+|++.+.+.....+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~   31 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRF   31 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCe
Confidence            3677999999999999999987764433

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.28  E-value=0.00015  Score=51.24  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=24.3

Q ss_pred             EE-EEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          43 IL-LVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        43 vL-l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      ++ ++|++|+|||||+..++..+   |..+..+..
T Consensus         3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~   37 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH   37 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEe
Confidence            44 99999999999999998877   455555543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.0018  Score=49.09  Aligned_cols=26  Identities=35%  Similarity=0.474  Sum_probs=20.5

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +..-.+|+|+||+|||+++-.+|..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            44455699999999999998887653

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.20  E-value=0.0032  Score=45.26  Aligned_cols=33  Identities=33%  Similarity=0.535  Sum_probs=22.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH----hCCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI----INVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~----~~~~~~~~~~   73 (225)
                      .++|+.+|+|+|||.++-.++..    .+...+.+.+
T Consensus        24 ~n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P   60 (200)
T d1wp9a1          24 TNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAP   60 (200)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECS
T ss_pred             CCeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcC
Confidence            46889999999999866555432    2455655544

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00015  Score=52.95  Aligned_cols=24  Identities=33%  Similarity=0.288  Sum_probs=20.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .-++++||||+|||++|..++...
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345599999999999999888654

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=97.14  E-value=0.00029  Score=47.61  Aligned_cols=18  Identities=28%  Similarity=0.182  Sum_probs=14.9

Q ss_pred             CCcEEEEcCCCCcHHHHH
Q psy5910          40 KSNILLVGPTGCGKTLMV   57 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la   57 (225)
                      ...++|.+|+|+|||..+
T Consensus         7 ~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TCEEEECCCTTSSTTTTH
T ss_pred             CCcEEEEcCCCCChhHHH
Confidence            357889999999999655

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.0025  Score=47.55  Aligned_cols=26  Identities=23%  Similarity=0.461  Sum_probs=21.1

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+.++++||..+|||++.|.++-..
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHHH
Confidence            34557799999999999999887543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00012  Score=54.65  Aligned_cols=23  Identities=35%  Similarity=0.323  Sum_probs=19.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .-++|+||||||||++|-.++..
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            35669999999999999887643

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00033  Score=51.47  Aligned_cols=23  Identities=26%  Similarity=0.572  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ++|+||||+|||+|.+.+.+..+
T Consensus         5 ivi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHHhhCC
Confidence            55999999999999999998764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.03  E-value=0.00053  Score=55.60  Aligned_cols=70  Identities=23%  Similarity=0.386  Sum_probs=42.4

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCC---CeEEeccC-cccccC--------ccCCcHHHHHHHHHHhcchhhhhhCCC
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINV---PIIVVDAT-SFTEAG--------YVGDDVESIIQKLLHECDYDVELAEQS  107 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~---~~~~~~~~-~~~~~~--------~~g~~~~~~~~~~~~~~~~~~~~~~~~  107 (225)
                      .+-+|+.||+|+||||+..++.+.++.   +++.+.-. +..-.+        -.+.+....++.+        -+..|-
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~--------lR~dPD  229 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAI--------LRQDPD  229 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHH--------GGGCCS
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCCcCCCHHHHHHHH--------HhhcCC
Confidence            345679999999999999999888743   34444321 110000        1122333333333        345899


Q ss_pred             EEEEcchhhh
Q psy5910         108 IIYIDEIDKI  117 (225)
Q Consensus       108 vl~iDEid~l  117 (225)
                      ||++.|+...
T Consensus       230 vi~igEiRd~  239 (401)
T d1p9ra_         230 VVMVGEIRDL  239 (401)
T ss_dssp             EEEESCCCSH
T ss_pred             EEEecCcCCh
Confidence            9999998753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.02  E-value=0.00024  Score=53.34  Aligned_cols=27  Identities=33%  Similarity=0.495  Sum_probs=21.0

Q ss_pred             eeCC-cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          38 LEKS-NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        38 ~~~~-~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+ -++++||||||||++|-.++...
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3444 45599999999999998887654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.01  E-value=0.00031  Score=50.23  Aligned_cols=32  Identities=22%  Similarity=0.332  Sum_probs=25.1

Q ss_pred             eeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          37 YLEKSNILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        37 ~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      .....+|||.|+||+|||++|-.+... |..++
T Consensus        11 ~~~g~gvl~~G~sG~GKStlal~l~~~-g~~lv   42 (176)
T d1kkma_          11 DIYGLGVLITGDSGVGKSETALELVQR-GHRLI   42 (176)
T ss_dssp             EETTEEEEEECCTTSCHHHHHHHHHHT-TCEEE
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHHHc-CCeEE
Confidence            355678999999999999999887765 44433

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00026  Score=51.14  Aligned_cols=24  Identities=25%  Similarity=0.517  Sum_probs=20.3

Q ss_pred             EEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          45 LVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      ++|++|+||||+|+.+. ..|.+++
T Consensus         8 itG~~gSGKstva~~l~-~~g~~~~   31 (191)
T d1uf9a_           8 ITGNIGSGKSTVAALLR-SWGYPVL   31 (191)
T ss_dssp             EEECTTSCHHHHHHHHH-HTTCCEE
T ss_pred             EECCCCCCHHHHHHHHH-HCCCeEE
Confidence            89999999999999985 4676654

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.98  E-value=0.00029  Score=49.41  Aligned_cols=25  Identities=28%  Similarity=0.438  Sum_probs=22.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVP   67 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~   67 (225)
                      |+|.|+=|+|||+++|.+++.++.+
T Consensus        36 i~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          36 VYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             EEEecCCCccHHHHHHHHHhhcccc
Confidence            5599999999999999999999764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.97  E-value=0.00023  Score=49.37  Aligned_cols=22  Identities=36%  Similarity=0.457  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|+||||||+|.+.+...
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988754

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00031  Score=52.62  Aligned_cols=27  Identities=26%  Similarity=0.214  Sum_probs=21.4

Q ss_pred             eeCC-cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          38 LEKS-NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        38 ~~~~-~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+++ -++++||||||||++|..++...
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4444 45599999999999999888643

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.91  E-value=0.0028  Score=48.12  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=24.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh----CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII----NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~----~~~~~~~~~~   74 (225)
                      -+++.|+||+|||+++..++..+    +.++..++..
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            35599999999999988776432    6677777654

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.90  E-value=0.002  Score=49.10  Aligned_cols=80  Identities=19%  Similarity=0.265  Sum_probs=47.0

Q ss_pred             eeCCcEE-EEcCCCCcHHHHHHHHHHHh---CCCeEEeccCccccc-----------C--c-cCCcHHHHHHHHHHhcch
Q psy5910          38 LEKSNIL-LVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFTEA-----------G--Y-VGDDVESIIQKLLHECDY   99 (225)
Q Consensus        38 ~~~~~vL-l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~-----------~--~-~g~~~~~~~~~~~~~~~~   99 (225)
                      .+.+.+. |+||||||||++|-.++...   +..+++++...-.+.           .  + .....+..    ++....
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~~~~E~~----~~~~~~  132 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQA----LEIADM  132 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHH----HHHHHH
T ss_pred             cccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCccCCHHHHHHhCCCHHHeEEecCCCHHHH----HHHHHH
Confidence            4445555 99999999999987666544   566777776542110           0  1 11122222    222222


Q ss_pred             hhhhhCCCEEEEcchhhhcccc
Q psy5910         100 DVELAEQSIIYIDEIDKISKKT  121 (225)
Q Consensus       100 ~~~~~~~~vl~iDEid~l~~~~  121 (225)
                      .+......++++|=+..+.++.
T Consensus       133 l~~~~~~~liIiDSi~al~~~~  154 (269)
T d1mo6a1         133 LIRSGALDIVVIDSVAALVPRA  154 (269)
T ss_dssp             HHHTTCEEEEEEECSTTCCCHH
T ss_pred             HHhcCCCCEEEEecccccccHH
Confidence            2334467799999999888643

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.00056  Score=53.37  Aligned_cols=32  Identities=16%  Similarity=0.448  Sum_probs=25.0

Q ss_pred             EEcCCCCcHHHHHHHHHHHhC-----CCeEEeccCcc
Q psy5910          45 LVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSF   76 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~~-----~~~~~~~~~~~   76 (225)
                      +.|++|+||||+|+.|...+.     ..+..++..++
T Consensus        85 IaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          85 IAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             EEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             EeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            999999999999999999873     34555555444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.84  E-value=0.00055  Score=50.95  Aligned_cols=30  Identities=27%  Similarity=0.590  Sum_probs=23.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh--CCCeEEec
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII--NVPIIVVD   72 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~--~~~~~~~~   72 (225)
                      +++.|++|+|||||.+.+.+.+  +.....++
T Consensus         3 i~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn   34 (244)
T d1yrba1           3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN   34 (244)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             EEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEe
Confidence            5699999999999999998766  33444443

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.83  E-value=0.0029  Score=46.88  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=21.0

Q ss_pred             eeCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          38 LEKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        38 ~~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+-++|+||..+|||++.|.++-..
T Consensus        33 ~~~~~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          33 MAHELVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             ESSCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             eCCcEEEEECCCccccchhhhhhHHHH
Confidence            334446799999999999999887543

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.00038  Score=48.21  Aligned_cols=22  Identities=27%  Similarity=0.498  Sum_probs=19.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .++|+|+||+|||+|...+...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988763

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.81  E-value=0.00037  Score=49.82  Aligned_cols=28  Identities=25%  Similarity=0.330  Sum_probs=23.1

Q ss_pred             eeeeCCcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          36 IYLEKSNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      +.....+|||.||||+|||++|-.+...
T Consensus        11 v~~~g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          11 LEVFGVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEETTEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence            3355678999999999999999887754

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.78  E-value=0.00034  Score=53.99  Aligned_cols=35  Identities=23%  Similarity=0.575  Sum_probs=24.6

Q ss_pred             cEE-EEcCCCCcHHHHHHHHHHHh---CCCeEEeccCcc
Q psy5910          42 NIL-LVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vL-l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~~~   76 (225)
                      +|+ +.|+||+||||+++++.+.+   +.....+...++
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            355 99999999999999998877   556666666554

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00063  Score=50.01  Aligned_cols=27  Identities=19%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             EEcCCCCcHHHHHHHHHHHh---CCCeEEe
Q psy5910          45 LVGPTGCGKTLMVKTLAKII---NVPIIVV   71 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~---~~~~~~~   71 (225)
                      |.|+.|+||||+++.|++.+   +.++..+
T Consensus         8 ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~   37 (209)
T d1nn5a_           8 LEGVDRAGKSTQSRKLVEALCAAGHRAELL   37 (209)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            66999999999999999987   5556554

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.76  E-value=0.00025  Score=51.34  Aligned_cols=28  Identities=29%  Similarity=0.443  Sum_probs=23.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      |.+.|+.|+||||+++.|++.++...+.
T Consensus        12 I~ieG~~GsGKTTl~~~L~~~l~~~~~~   39 (197)
T d2vp4a1          12 VLIEGNIGSGKTTYLNHFEKYKNDICLL   39 (197)
T ss_dssp             EEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            4489999999999999999998764443

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.74  E-value=0.00056  Score=48.54  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=23.3

Q ss_pred             eeeeCCcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          36 IYLEKSNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      +.....+|||.|+||+|||++|-.+.+.
T Consensus        11 v~~~g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          11 VDVYGVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3455679999999999999999877765

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.73  E-value=0.00079  Score=51.88  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=24.4

Q ss_pred             EE-EEcCCCCcHHHHHHHHHHHh------CCCeEEeccCcc
Q psy5910          43 IL-LVGPTGCGKTLMVKTLAKII------NVPIIVVDATSF   76 (225)
Q Consensus        43 vL-l~Gp~GtGKT~la~~ia~~~------~~~~~~~~~~~~   76 (225)
                      ++ |.|++||||||+|..|...+      ...+..++..++
T Consensus        29 iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          29 FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            44 89999999999999887665      334555555444

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.70  E-value=0.00053  Score=50.17  Aligned_cols=25  Identities=32%  Similarity=0.590  Sum_probs=21.2

Q ss_pred             EEcCCCCcHHHHHHHHHHHhCCCeEE
Q psy5910          45 LVGPTGCGKTLMVKTLAKIINVPIIV   70 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~~~~~~~   70 (225)
                      ++|++||||||+|+.+. ..|.+++.
T Consensus         7 ITG~igSGKStv~~~l~-~~G~~vid   31 (205)
T d1jjva_           7 LTGGIGSGKTTIANLFT-DLGVPLVD   31 (205)
T ss_dssp             EECSTTSCHHHHHHHHH-TTTCCEEE
T ss_pred             EECCCCCCHHHHHHHHH-HCCCeEEE
Confidence            89999999999999886 46777654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.68  E-value=0.00051  Score=47.83  Aligned_cols=22  Identities=36%  Similarity=0.529  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|+|+|.||||||+|.+++...
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5889999999999999988753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.68  E-value=0.00062  Score=50.55  Aligned_cols=27  Identities=26%  Similarity=0.358  Sum_probs=21.2

Q ss_pred             eeCCc-EEEEcCCCCcHHHHHHHHHHHh
Q psy5910          38 LEKSN-ILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        38 ~~~~~-vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+.+. ++|.|+||+|||++|..+|..+
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            34444 4599999999999999888655

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.63  E-value=0.0003  Score=49.92  Aligned_cols=23  Identities=22%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHH
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ...|+|+|+||+|||+|...+..
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34789999999999999988754

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.00067  Score=49.45  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ++|+|.|+||+|||+|.+++...
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            37899999999999999988763

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00069  Score=54.07  Aligned_cols=22  Identities=32%  Similarity=0.440  Sum_probs=16.8

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHH
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia   61 (225)
                      .+-+++.||||||||+++..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            3456699999999998875443

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=96.56  E-value=0.00072  Score=52.57  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=17.9

Q ss_pred             CcEEEEcCCCCcHHHH-HHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLM-VKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~l-a~~ia~~~   64 (225)
                      +++++.|+||||||++ +..++..+
T Consensus        25 g~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             SCEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCEEEEecCCccHHHHHHHHHHHHH
Confidence            5788999999999975 44555443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.53  E-value=0.00075  Score=48.99  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=21.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      +.|+|+|+||+|||+|..++.+.-
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478899999999999999998653

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.52  E-value=0.00066  Score=47.52  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|.+.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            588999999999999998865

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.51  E-value=0.0014  Score=47.59  Aligned_cols=30  Identities=23%  Similarity=0.426  Sum_probs=24.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEec
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVD   72 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~   72 (225)
                      |.+.|+.|+||||+++.|++.+   |.++..+.
T Consensus         3 I~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~   35 (208)
T d1gsia_           3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLA   35 (208)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            4588999999999999999877   55665553

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.00081  Score=49.29  Aligned_cols=24  Identities=29%  Similarity=0.574  Sum_probs=19.8

Q ss_pred             EEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          45 LVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      ++|++|+||||+|+.+. ..|.+++
T Consensus         8 itG~igSGKStv~~~l~-~~G~~vi   31 (208)
T d1vhta_           8 LTGGIGSGKSTVANAFA-DLGINVI   31 (208)
T ss_dssp             EECCTTSCHHHHHHHHH-HTTCEEE
T ss_pred             EECCCcCCHHHHHHHHH-HCCCcEE
Confidence            89999999999999886 5566544

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00081  Score=47.57  Aligned_cols=22  Identities=23%  Similarity=0.563  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|||||+|++.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4889999999999999987643

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=96.47  E-value=0.00074  Score=52.01  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=16.6

Q ss_pred             CcEEEEcCCCCcHHHH-HHHHHH
Q psy5910          41 SNILLVGPTGCGKTLM-VKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~l-a~~ia~   62 (225)
                      +++|+.|+||||||++ +..++.
T Consensus        15 ~~~lI~g~aGTGKTt~l~~rv~~   37 (306)
T d1uaaa1          15 GPCLVLAGAGSGKTRVITNKIAH   37 (306)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEeeCCccHHHHHHHHHHH
Confidence            5788999999999975 444443

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.43  E-value=0.00091  Score=48.91  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      |.|.|+.|+||||+++.+++.+
T Consensus         5 IviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            5588999999999999999887

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.42  E-value=0.00096  Score=46.69  Aligned_cols=21  Identities=29%  Similarity=0.588  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|+||+|||+|+..+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999988775

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.38  E-value=0.00093  Score=47.11  Aligned_cols=21  Identities=24%  Similarity=0.525  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.||+|||+|...+..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999998875

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.33  E-value=0.0012  Score=46.25  Aligned_cols=22  Identities=36%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|+|.|++|+|||+|...+...
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6889999999999999988653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.33  E-value=0.0012  Score=46.54  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|.+.+...
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4889999999999999988753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.33  E-value=0.012  Score=44.74  Aligned_cols=25  Identities=20%  Similarity=0.209  Sum_probs=22.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      ++|-+.|..|+|||||+.++....+
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g   31 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTG   31 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcC
Confidence            5888999999999999999986654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.29  E-value=0.0012  Score=46.20  Aligned_cols=22  Identities=18%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|++.+...
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0012  Score=47.19  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999988874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0013  Score=46.02  Aligned_cols=22  Identities=18%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|.+|+|||+|++.+...
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0013  Score=46.17  Aligned_cols=22  Identities=23%  Similarity=0.477  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|.+.+...
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988763

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0013  Score=46.31  Aligned_cols=21  Identities=38%  Similarity=0.797  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+++.|++|+|||+|.+.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998886

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0013  Score=46.27  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|||||+|.+.+..
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999998875

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0024  Score=46.91  Aligned_cols=30  Identities=27%  Similarity=0.296  Sum_probs=24.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      |.|.|+-||||||+++.+++.+......+.
T Consensus         6 I~iEG~DGsGKST~~~~L~~~L~~~~~~~~   35 (214)
T d1tmka_           6 ILIEGLDRTGKTTQCNILYKKLQPNCKLLK   35 (214)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHTTTSEEEEE
T ss_pred             EEEECCCCCcHHHHHHHHHHHHHhCCEEEE
Confidence            448999999999999999999976655543

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0014  Score=45.88  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|+..+...
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999988763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0015  Score=46.20  Aligned_cols=21  Identities=24%  Similarity=0.713  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+++.|++|+|||+|++.+..
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.18  E-value=0.0014  Score=46.09  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|.+.|+||+|||+|.+++..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            477999999999999999874

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0013  Score=46.04  Aligned_cols=22  Identities=18%  Similarity=0.378  Sum_probs=19.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..|++.|++|+|||+|.+.+..
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHh
Confidence            3688999999999999998775

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0016  Score=45.83  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|.+|+|||+|++.+...
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            6889999999999999988753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.0016  Score=45.64  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|||||+|++.+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998875

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.16  E-value=0.0012  Score=49.29  Aligned_cols=28  Identities=18%  Similarity=0.242  Sum_probs=22.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEec
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD   72 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~   72 (225)
                      |-|+|+.||||||+|+.+++.+|.  ..++
T Consensus         4 IgiTG~igSGKsTva~~l~e~~g~--~~i~   31 (241)
T d1deka_           4 IFLSGVKRSGKDTTADFIMSNYSA--VKYQ   31 (241)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHSCE--EECC
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC--eEEc
Confidence            339999999999999999987654  4454

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.14  E-value=0.0018  Score=49.10  Aligned_cols=22  Identities=32%  Similarity=0.545  Sum_probs=20.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      +|+|+|.||+|||++..+|...
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            7899999999999999999753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0017  Score=45.78  Aligned_cols=21  Identities=24%  Similarity=0.654  Sum_probs=18.6

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+++.|++|+|||+|.+.+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            478999999999999998764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.11  E-value=0.0017  Score=46.25  Aligned_cols=21  Identities=24%  Similarity=0.661  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|||||+|++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0016  Score=45.70  Aligned_cols=21  Identities=29%  Similarity=0.555  Sum_probs=18.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|.+.+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999988764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0017  Score=45.22  Aligned_cols=21  Identities=19%  Similarity=0.491  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|++.+..
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.09  E-value=0.0018  Score=45.15  Aligned_cols=21  Identities=24%  Similarity=0.536  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|++.+..
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998875

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0018  Score=45.27  Aligned_cols=22  Identities=32%  Similarity=0.635  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|++|+|||+|.+.+...
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988753

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0018  Score=45.74  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|++.+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            689999999999999988775

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.07  E-value=0.0016  Score=45.96  Aligned_cols=21  Identities=48%  Similarity=0.708  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|+++|++|+|||+|.+.+..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            689999999999999988753

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.06  E-value=0.014  Score=43.33  Aligned_cols=34  Identities=26%  Similarity=0.354  Sum_probs=23.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH-h--CCCeEEeccC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI-I--NVPIIVVDAT   74 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~-~--~~~~~~~~~~   74 (225)
                      ...||+|.+|+|||.++-..+.. +  |.....+-+.
T Consensus        77 ~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt  113 (233)
T d2eyqa3          77 MDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPT  113 (233)
T ss_dssp             CEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSS
T ss_pred             cCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccH
Confidence            47889999999999987544433 3  5556665554

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.04  E-value=0.0017  Score=46.05  Aligned_cols=21  Identities=24%  Similarity=0.542  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|+|+|+||+|||||..+|.+
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999874

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0023  Score=51.81  Aligned_cols=34  Identities=29%  Similarity=0.545  Sum_probs=24.8

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      .+|++++|+||+|||++++.+...+   +.+++.+++
T Consensus        50 ~~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~   86 (433)
T d1e9ra_          50 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP   86 (433)
T ss_dssp             GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence            4699999999999999887665443   455555544

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.00071  Score=50.29  Aligned_cols=25  Identities=24%  Similarity=0.397  Sum_probs=21.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      -|.+-|+-||||||+|+.|++.+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~~l~~   28 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQLCED   28 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGGGCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4569999999999999999998854

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0017  Score=46.02  Aligned_cols=22  Identities=32%  Similarity=0.594  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|++.|++|+|||+|...+...
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999887754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.01  E-value=0.0019  Score=44.74  Aligned_cols=21  Identities=24%  Similarity=0.569  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|+||+|||+|.+++..
T Consensus         3 kI~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999998874

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0029  Score=46.95  Aligned_cols=28  Identities=25%  Similarity=0.287  Sum_probs=23.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCCCeE
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINVPII   69 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~~~~   69 (225)
                      -+.+-|+-||||||+++.|++.++...+
T Consensus         4 ~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            3568999999999999999999866443

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0022  Score=50.40  Aligned_cols=23  Identities=22%  Similarity=0.525  Sum_probs=19.8

Q ss_pred             cEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      .++ ++||||+|||||...++..+
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHH
Confidence            444 99999999999999998766

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.99  E-value=0.0019  Score=46.42  Aligned_cols=22  Identities=27%  Similarity=0.546  Sum_probs=19.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      +.|.|.|+||+|||||.+++.+
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHhcC
Confidence            3688999999999999999974

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.98  E-value=0.0023  Score=50.11  Aligned_cols=24  Identities=21%  Similarity=0.498  Sum_probs=20.3

Q ss_pred             CcEE-EEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNIL-LVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vL-l~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..++ +.||||+|||||...++..+
T Consensus        51 ~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          51 AIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            3455 99999999999999988765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0023  Score=44.72  Aligned_cols=21  Identities=29%  Similarity=0.574  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|.+.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0023  Score=45.10  Aligned_cols=21  Identities=24%  Similarity=0.643  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|++.+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998764

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.91  E-value=0.0045  Score=45.01  Aligned_cols=33  Identities=27%  Similarity=0.383  Sum_probs=27.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      ++.++..|+|+|||.++-.++..++.+.+.+.+
T Consensus        86 ~~~ll~~~tG~GKT~~a~~~~~~~~~~~Liv~p  118 (206)
T d2fz4a1          86 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVP  118 (206)
T ss_dssp             SEEEEEESSSTTHHHHHHHHHHHSCSCEEEEES
T ss_pred             CCcEEEeCCCCCceehHHhHHHHhcCceeEEEc
Confidence            456788999999999998888888887766655

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0026  Score=44.46  Aligned_cols=22  Identities=18%  Similarity=0.483  Sum_probs=19.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|+++|.+|+|||+|.+.+...
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999988753

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0025  Score=44.73  Aligned_cols=21  Identities=29%  Similarity=0.695  Sum_probs=18.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|++.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhC
Confidence            478999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.85  E-value=0.0027  Score=44.56  Aligned_cols=21  Identities=24%  Similarity=0.563  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999998765

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0027  Score=44.55  Aligned_cols=21  Identities=33%  Similarity=0.694  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+++.|++|+|||+|++.+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.85  E-value=0.0027  Score=44.76  Aligned_cols=21  Identities=24%  Similarity=0.608  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|+..+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999987765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0025  Score=44.86  Aligned_cols=21  Identities=29%  Similarity=0.657  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|++.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998864

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0029  Score=44.74  Aligned_cols=21  Identities=29%  Similarity=0.691  Sum_probs=19.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|.+.+..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.003  Score=44.27  Aligned_cols=21  Identities=24%  Similarity=0.531  Sum_probs=18.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+++.|++|+|||+|...+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999987765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.78  E-value=0.0028  Score=44.97  Aligned_cols=22  Identities=41%  Similarity=0.755  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|+|.|++|+|||+|.+.+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999888763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.78  E-value=0.0028  Score=45.56  Aligned_cols=21  Identities=29%  Similarity=0.702  Sum_probs=18.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|++.+..
T Consensus         8 KivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhh
Confidence            488999999999999998875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.0028  Score=46.90  Aligned_cols=25  Identities=16%  Similarity=0.319  Sum_probs=20.4

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ....+|.|+||+|||||..++....
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             CCeEEEECCCCCCHHHHHHhhcchh
Confidence            3456799999999999999987543

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=95.76  E-value=0.00032  Score=50.45  Aligned_cols=30  Identities=20%  Similarity=0.314  Sum_probs=23.3

Q ss_pred             eeeeCCcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          36 IYLEKSNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        36 ~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +...++-.+|+||.|+|||++..+|.-.+.
T Consensus        20 i~f~~~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          20 FDLDELVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             ECHHHHHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             EEcCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence            334444556899999999999999987763

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.75  E-value=0.0031  Score=44.26  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .+++.|.+|||||+|.+.+..
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0033  Score=44.66  Aligned_cols=22  Identities=23%  Similarity=0.375  Sum_probs=19.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .+++.|.+|+|||+|.+.+...
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            6889999999999999887753

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.65  E-value=0.002  Score=45.34  Aligned_cols=21  Identities=33%  Similarity=0.525  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|+++|+||+|||+|.+.+..
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            688999999999999998864

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.59  E-value=0.0036  Score=44.20  Aligned_cols=23  Identities=22%  Similarity=0.473  Sum_probs=20.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      +.|.+.|.||+|||+|.+++.+.
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35789999999999999998754

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.55  E-value=0.0019  Score=45.48  Aligned_cols=21  Identities=33%  Similarity=0.694  Sum_probs=9.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|||||+|.+.+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0039  Score=44.40  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|.+|+|||+|.+.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            588999999999999988775

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.53  E-value=0.0024  Score=45.32  Aligned_cols=20  Identities=40%  Similarity=0.685  Sum_probs=18.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia   61 (225)
                      .|++.|++|+|||+|.+.+.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            68899999999999998774

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0042  Score=44.43  Aligned_cols=21  Identities=24%  Similarity=0.438  Sum_probs=18.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|.+.+..
T Consensus         5 KvvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999887765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.002  Score=45.33  Aligned_cols=21  Identities=43%  Similarity=0.631  Sum_probs=17.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|++.|++|+|||+|.+.+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999887654

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.0041  Score=43.71  Aligned_cols=22  Identities=27%  Similarity=0.451  Sum_probs=19.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      +.|.|.|.||+|||+|.+++.+
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3577999999999999999975

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0022  Score=45.30  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=19.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..|.|+|.|++|||+|.+++..
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~   38 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTN   38 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4688999999999999988853

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=95.20  E-value=0.11  Score=34.85  Aligned_cols=31  Identities=26%  Similarity=0.529  Sum_probs=23.1

Q ss_pred             EEEcCCCCcHHH-HHHHHHH--HhCCCeEEeccC
Q psy5910          44 LLVGPTGCGKTL-MVKTLAK--IINVPIIVVDAT   74 (225)
Q Consensus        44 Ll~Gp~GtGKT~-la~~ia~--~~~~~~~~~~~~   74 (225)
                      +++||..+|||+ |.+.+.+  ..+.+++.+++.
T Consensus         6 ~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~   39 (139)
T d2b8ta1           6 FITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK   39 (139)
T ss_dssp             EEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence            478999999998 7777644  347777777664

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.16  E-value=0.007  Score=45.86  Aligned_cols=34  Identities=26%  Similarity=0.246  Sum_probs=24.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      ..-||.|..|||||.+|-..+...   |.....+-+.
T Consensus       105 m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt  141 (264)
T d1gm5a3         105 MNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPT  141 (264)
T ss_dssp             CCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSC
T ss_pred             ceeeeeccccccccHHHHHHHHHHHhcccceeEEeeh
Confidence            467899999999999876444322   6666666554

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.14  E-value=0.0045  Score=43.87  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|-|+|+|++|||+|.+++.+
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            577999999999999998853

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.14  E-value=0.0043  Score=43.83  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=18.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|.|+|.||+|||||.+++.+
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999864

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.13  E-value=0.0022  Score=47.72  Aligned_cols=26  Identities=15%  Similarity=0.503  Sum_probs=20.0

Q ss_pred             eCCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          39 EKSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .....+|.|+||+|||||..++....
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            34456799999999999999887543

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.10  E-value=0.0065  Score=42.98  Aligned_cols=21  Identities=19%  Similarity=0.506  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .|.+.|.+|+|||+|..++.+
T Consensus        10 kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2          10 KVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHC
Confidence            578999999999999999875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.01  E-value=0.002  Score=44.51  Aligned_cols=22  Identities=23%  Similarity=0.507  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      .|.|.|.||+|||+|.+++...
T Consensus         2 kI~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4779999999999999999764

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.01  E-value=0.0065  Score=43.38  Aligned_cols=19  Identities=37%  Similarity=0.686  Sum_probs=17.6

Q ss_pred             cEEEEcCCCCcHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTL   60 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~i   60 (225)
                      .|++.|.+|+|||+|.+.+
T Consensus         4 KivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            5789999999999999988

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0082  Score=42.37  Aligned_cols=23  Identities=13%  Similarity=0.258  Sum_probs=19.9

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      -.|++.|++|+|||+|.+.+...
T Consensus         6 ~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           6 LRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            37889999999999999988764

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.88  E-value=0.014  Score=42.03  Aligned_cols=32  Identities=19%  Similarity=0.190  Sum_probs=25.9

Q ss_pred             cEEEEcC-CCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          42 NILLVGP-TGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        42 ~vLl~Gp-~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      .+++.|- +|+||||++-.+|..+   |..+..++.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~   38 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP   38 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECc
Confidence            5778998 5999999988887766   777777765

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.86  E-value=0.017  Score=43.71  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=27.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      +-+++.|--|+||||+|-++|..+   |.++..+++.
T Consensus         9 ~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             eEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            355689999999999988888777   7777777764

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.80  E-value=0.0055  Score=44.24  Aligned_cols=19  Identities=47%  Similarity=0.732  Sum_probs=16.3

Q ss_pred             CCcEEEEcCCCCcHHHHHH
Q psy5910          40 KSNILLVGPTGCGKTLMVK   58 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~   58 (225)
                      .+++++.+|+|+|||+++-
T Consensus        40 ~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          40 GKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             CSCEEEECSSHHHHHHHHH
T ss_pred             CCCEEEEcCCCCchhHHHH
Confidence            4589999999999998763

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.50  E-value=0.01  Score=43.51  Aligned_cols=23  Identities=30%  Similarity=0.577  Sum_probs=19.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ..|||.|++|+|||++.+.+...
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~   29 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRIL   29 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999887543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.49  E-value=0.0093  Score=45.64  Aligned_cols=23  Identities=26%  Similarity=0.603  Sum_probs=19.4

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      --+|+||.|||||++..||+-.+
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             eEEEECCCCCcHHHHHHHHHHHh
Confidence            34599999999999999997654

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.012  Score=44.99  Aligned_cols=24  Identities=33%  Similarity=0.617  Sum_probs=21.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..+++.|++|||||+|+..+++..
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHH
Confidence            578899999999999999888755

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.15  E-value=0.015  Score=41.17  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=19.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      .+++.|.+|+|||+|.+.+...-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999886554

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.10  E-value=0.012  Score=46.02  Aligned_cols=24  Identities=29%  Similarity=0.379  Sum_probs=21.8

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      .|.|-|+-|+||||+++.+++.++
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            577899999999999999999884

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.89  E-value=0.017  Score=45.92  Aligned_cols=25  Identities=32%  Similarity=0.725  Sum_probs=20.5

Q ss_pred             CcE-EEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNI-LLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~v-Ll~Gp~GtGKT~la~~ia~~~~   65 (225)
                      +++ +|+||.|+|||++..||+=.+|
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~lg   50 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVLG   50 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            344 6999999999999999975554

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.85  E-value=0.036  Score=41.63  Aligned_cols=32  Identities=28%  Similarity=0.490  Sum_probs=25.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      +++.|--|+||||++-.+|..+   |..+..+++.
T Consensus        23 ii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~D   57 (279)
T d1ihua2          23 IMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSD   57 (279)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4488999999999877776655   7778877775

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.82  E-value=0.027  Score=37.05  Aligned_cols=35  Identities=9%  Similarity=0.064  Sum_probs=26.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh-----CCCeEEeccCcc
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSF   76 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~-----~~~~~~~~~~~~   76 (225)
                      .++|.|-+|+||+++|+++...+     +.++-.++...+
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni   47 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK   47 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCH
Confidence            46799999999999999997665     345555555443

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.015  Score=42.69  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      -.++.|.-|+||||+.+.+.+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~~   27 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNEQ   27 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHSC
T ss_pred             EEEEeeCCCCCHHHHHHHHHhcC
Confidence            45699999999999999887754

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.56  E-value=0.027  Score=41.46  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=22.8

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh---CCCeEEecc
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDA   73 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~   73 (225)
                      ...+++.+|+|+|||+++-..+...   +...+.+.+
T Consensus        58 g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~P   94 (237)
T d1gkub1          58 KESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFP   94 (237)
T ss_dssp             TCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEES
T ss_pred             CCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEec
Confidence            4588999999999998765444322   445555544

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.50  E-value=0.024  Score=42.83  Aligned_cols=25  Identities=32%  Similarity=0.486  Sum_probs=21.4

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIIN   65 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~   65 (225)
                      |+|.+.|..|+|||||+.++....+
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g   27 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTG   27 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcC
Confidence            4788999999999999999975553

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.39  E-value=0.023  Score=40.01  Aligned_cols=21  Identities=33%  Similarity=0.602  Sum_probs=18.3

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      .++|.|..|+|||++.+.+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            588999999999999987754

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=93.31  E-value=0.015  Score=44.96  Aligned_cols=17  Identities=29%  Similarity=0.505  Sum_probs=14.6

Q ss_pred             cEEEEcCCCCcHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVK   58 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~   58 (225)
                      ..||+|.||||||||..
T Consensus        16 valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          16 VAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             EEEEEECTTSCHHHHTC
T ss_pred             EEEEEccCCCCcccccc
Confidence            46799999999999864

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.22  E-value=0.02  Score=44.73  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=22.2

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      .|.+-|+-|+||||+++.+++.++.
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4678999999999999999998854

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=93.15  E-value=0.019  Score=44.29  Aligned_cols=17  Identities=29%  Similarity=0.505  Sum_probs=14.5

Q ss_pred             cEEEEcCCCCcHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVK   58 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~   58 (225)
                      ..||.|-||||||||..
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          16 VAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEEECSTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            45799999999999873

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.12  E-value=0.045  Score=40.93  Aligned_cols=33  Identities=24%  Similarity=0.423  Sum_probs=26.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      .|-++|-=|+||||+|-.+|..+   |.++..+++.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D   38 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCD   38 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            35578999999999988877666   7788888875

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=93.08  E-value=0.042  Score=44.12  Aligned_cols=51  Identities=24%  Similarity=0.365  Sum_probs=39.1

Q ss_pred             hhhHHhhheeeeEecccceEeecccceeeeCCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccCc
Q psy5910          10 QHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS   75 (225)
Q Consensus        10 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~~   75 (225)
                      |-.+++.|.+.+.               ...+..+|.|-+|+|||.++.++++..+.|++.+....
T Consensus        16 QP~aI~~l~~~l~---------------~g~~~q~l~GltGS~ka~~iA~l~~~~~rp~LVVt~n~   66 (413)
T d1t5la1          16 QPQAIAKLVDGLR---------------RGVKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNK   66 (413)
T ss_dssp             HHHHHHHHHHHHH---------------HTCSEEEEEECTTSCHHHHHHHHHHHHTCCEEEECSSH
T ss_pred             CHHHHHHHHHHHh---------------cCCCcEEEeCCCCcHHHHHHHHHHHHhCCCEEEEeCCH
Confidence            4556777766551               22356889999999999999999999999988887654

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.69  E-value=0.036  Score=42.01  Aligned_cols=25  Identities=32%  Similarity=0.518  Sum_probs=21.0

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ...+++.|++|||||+|+..+++..
T Consensus        68 GQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          68 GGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            3468899999999999998887653

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.44  E-value=0.026  Score=43.60  Aligned_cols=17  Identities=29%  Similarity=0.499  Sum_probs=14.7

Q ss_pred             cEEEEcCCCCcHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVK   58 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~   58 (225)
                      ..||.|-||||||||..
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEEECCTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            46799999999999983

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.33  E-value=0.027  Score=43.90  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=19.0

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHhCC
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKIINV   66 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~~~   66 (225)
                      .|.|-|+-|+||||+++.+++.++.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC
Confidence            3668899999999999999987744

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=92.09  E-value=0.046  Score=38.32  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=18.9

Q ss_pred             cEEEEcCCCCcHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      +|-++|.|.+|||||.+++.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            577999999999999999974

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=0.041  Score=44.02  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=19.7

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      -+|.++|.||+|||+|..++..
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3688999999999999999964

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.66  E-value=0.12  Score=37.36  Aligned_cols=30  Identities=30%  Similarity=0.457  Sum_probs=23.8

Q ss_pred             EEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          45 LVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        45 l~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      ..|-.|+||||+|..+|..+   +.++..+++.
T Consensus         7 ~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D   39 (232)
T d1hyqa_           7 ASGKGGTGKTTITANLGVALAQLGHDVTIVDAD   39 (232)
T ss_dssp             EESSSCSCHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            44779999999998888776   6777777663

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.26  Score=32.72  Aligned_cols=72  Identities=17%  Similarity=0.220  Sum_probs=35.7

Q ss_pred             EEEcCCCCcHHH-HHHHHHHH--hCCCeEEeccCcccccCccCCcHHHHHHHHHHhcc------hhhhhhCCCEEEEcch
Q psy5910          44 LLVGPTGCGKTL-MVKTLAKI--INVPIIVVDATSFTEAGYVGDDVESIIQKLLHECD------YDVELAEQSIIYIDEI  114 (225)
Q Consensus        44 Ll~Gp~GtGKT~-la~~ia~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~~~~~~~~~vl~iDEi  114 (225)
                      +++||..+|||+ |.+.+.+.  .+..+..+++..-.  .|.+...... ........      .........+|++||+
T Consensus         6 li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp~~D~--R~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~I~IDEa   82 (133)
T d1xbta1           6 VILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDT--RYSSSFCTHD-RNTMEALPACLLRDVAQEALGVAVIGIDEG   82 (133)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCC--C---------------CEEESSGGGGHHHHHTCSEEEESSG
T ss_pred             EEEecccCHHHHHHHHHHHHHHHcCCcEEEEeccccc--CCcceeeecC-CCcceeeeeechhhhhhhhcccceEEeehh
Confidence            478999999997 45555433  36677777654321  1322111110 00000000      0011235679999999


Q ss_pred             hhhc
Q psy5910         115 DKIS  118 (225)
Q Consensus       115 d~l~  118 (225)
                      .-+.
T Consensus        83 QFf~   86 (133)
T d1xbta1          83 QFFP   86 (133)
T ss_dssp             GGCT
T ss_pred             HHHH
Confidence            9874

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=91.61  E-value=0.055  Score=46.37  Aligned_cols=24  Identities=25%  Similarity=0.547  Sum_probs=21.1

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|++.|+||+|||+.++.|.+.+
T Consensus        87 QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          87 QCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368999999999999999887765

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.57  E-value=0.13  Score=37.20  Aligned_cols=30  Identities=30%  Similarity=0.531  Sum_probs=24.0

Q ss_pred             EE-cCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          45 LV-GPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        45 l~-Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      ++ +-.|+||||+|-.+|..+   |.++..+++.
T Consensus         7 v~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D   40 (237)
T d1g3qa_           7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGD   40 (237)
T ss_dssp             EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             EECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence            66 559999999998888766   7788888763

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.54  E-value=0.091  Score=39.65  Aligned_cols=32  Identities=19%  Similarity=0.394  Sum_probs=25.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT   74 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~   74 (225)
                      |.++|-=|+||||+|-.+|..+   |..+..+++.
T Consensus         5 IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~D   39 (289)
T d2afhe1           5 CAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCD   39 (289)
T ss_dssp             EEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecC
Confidence            4478999999999877666555   7888888774

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.49  E-value=0.058  Score=46.44  Aligned_cols=24  Identities=29%  Similarity=0.564  Sum_probs=21.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|++.|+||+|||..++.+.+.+
T Consensus       126 QsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         126 QSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHH
Confidence            368999999999999999887765

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=91.08  E-value=0.064  Score=46.76  Aligned_cols=24  Identities=33%  Similarity=0.616  Sum_probs=20.8

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|++.|+||+|||+.++.|.+.+
T Consensus       124 QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         124 QSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368999999999999998887766

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=90.81  E-value=0.073  Score=46.37  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|++.|+||+|||..++.+.+.+
T Consensus       122 Q~IiisGESGaGKTe~~K~il~yL  145 (789)
T d1kk8a2         122 QSCLITGESGAGKTENTKKVIMYL  145 (789)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            368999999999999998888766

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=90.77  E-value=0.074  Score=45.74  Aligned_cols=24  Identities=33%  Similarity=0.522  Sum_probs=21.2

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|++.|+||+|||+.++.|.+.+
T Consensus        92 Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          92 QSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            368999999999999999888776

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=90.74  E-value=0.11  Score=41.45  Aligned_cols=34  Identities=26%  Similarity=0.516  Sum_probs=29.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHhCCCeEEeccC
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT   74 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~~   74 (225)
                      +.++|.|.+|++|+.++-++++..+.|++.+...
T Consensus        29 ~~~~L~GlsgS~ka~~~A~l~~~~~rp~LvVt~~   62 (408)
T d1c4oa1          29 RFVTLLGATGTGKTVTMAKVIEALGRPALVLAPN   62 (408)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CcEEEecCCCCHHHHHHHHHHHHhCCCEEEEeCC
Confidence            3567999999999999999999999998887654

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=90.40  E-value=0.025  Score=40.59  Aligned_cols=32  Identities=38%  Similarity=0.475  Sum_probs=21.7

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHHhCCCeEEe
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVV   71 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~~~~~~~~~   71 (225)
                      ..++++.-|+|+|||.++....-......+.+
T Consensus        40 g~~vlv~apTGsGKT~~~~~~~~~~~~~~~~v   71 (206)
T d1oywa2          40 GRDCLVVMPTGGGKSLCYQIPALLLNGLTVVV   71 (206)
T ss_dssp             TCCEEEECSCHHHHHHHHHHHHHHSSSEEEEE
T ss_pred             CCCEEEEcCCCCCCcchhhhhhhhccCceEEe
Confidence            46899999999999987754443333333333

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.99  E-value=0.095  Score=45.22  Aligned_cols=24  Identities=29%  Similarity=0.537  Sum_probs=21.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ..|++.|+||+|||+.++.+.+.+
T Consensus        95 Q~IiisGeSGsGKTe~~k~il~~l  118 (730)
T d1w7ja2          95 QSIIVSGESGAGKTVSAKYAMRYF  118 (730)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            368899999999999999887765

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.95  E-value=0.12  Score=37.69  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHh
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      |-+.|-|.+|||||..+|....
T Consensus         8 IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHhhc
Confidence            6699999999999999987653

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.44  E-value=0.11  Score=36.64  Aligned_cols=30  Identities=20%  Similarity=0.311  Sum_probs=23.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHhCCCeEEecc
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDA   73 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~~~~~~~~~~~   73 (225)
                      +|++|++.+|||..|..++... .+.+++..
T Consensus         2 iLVtGGarSGKS~~AE~l~~~~-~~~~YiAT   31 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGDA-PQVLYIAT   31 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCSC-SSEEEEEC
T ss_pred             EEEECCCCccHHHHHHHHHhcC-CCcEEEEc
Confidence            5799999999999999987654 34555543

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=89.29  E-value=0.13  Score=38.70  Aligned_cols=17  Identities=29%  Similarity=0.300  Sum_probs=14.4

Q ss_pred             eCCcEEEEcCCCCcHHH
Q psy5910          39 EKSNILLVGPTGCGKTL   55 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~   55 (225)
                      +++.+++.+|+|+|||+
T Consensus         8 ~~~~~lv~~~TGsGKT~   24 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTK   24 (305)
T ss_dssp             TTCEEEECCCTTSSTTT
T ss_pred             cCCcEEEEECCCCCHHH
Confidence            44678899999999995

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.92  E-value=0.12  Score=39.27  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=18.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~   62 (225)
                      ..+++.|++|+|||+++..++.
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            4688999999999999876654

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.19  E-value=2.6  Score=28.46  Aligned_cols=93  Identities=13%  Similarity=0.099  Sum_probs=47.7

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHHh---CCCeEEeccC---cc--------------c--ccC--ccCCcHH---HHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKII---NVPIIVVDAT---SF--------------T--EAG--YVGDDVE---SIIQKLL   94 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~~---~~~~~~~~~~---~~--------------~--~~~--~~g~~~~---~~~~~~~   94 (225)
                      -+.+|--+|=||||.|--+|=..   |..++.+..-   ..              .  ..+  |...+.+   ......+
T Consensus         4 ~i~vytG~GKGKTTAAlG~alRA~G~G~rV~ivQFlKg~~~~ge~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~   83 (157)
T d1g5ta_           4 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW   83 (157)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCcHHHHHHHHHHHhcCCCEEEEEEEecCCcccchhhhhcccCcEEEEecCCCcccCCChHHHHHHHHHHH
Confidence            35577788999999875444222   5554444220   00              0  001  1222211   1222333


Q ss_pred             HhcchhhhhhCCCEEEEcchhhhcccccccCCCCCChHHHHHHHHHHHhc
Q psy5910          95 HECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEG  144 (225)
Q Consensus        95 ~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~Ll~~l~~  144 (225)
                      ..+...+......+|++||+..+..-.=-          -.+.++.+|+.
T Consensus        84 ~~a~~~~~~~~~dllILDEi~~Ai~~gli----------~~~~v~~ll~~  123 (157)
T d1g5ta_          84 QHGKRMLADPLLDMVVLDELTYMVAYDYL----------PLEEVISALNA  123 (157)
T ss_dssp             HHHHHHTTCTTCSEEEEETHHHHHHTTSS----------CHHHHHHHHHT
T ss_pred             HHHHHHhhcCccCEEeHHHHHHHHHcCCC----------CHHHHHHHHHh
Confidence            33333334456789999999987643100          13567777775

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=88.12  E-value=0.15  Score=36.54  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.1

Q ss_pred             cEEEEcCCCCcHHHHHHHHHHH
Q psy5910          42 NILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        42 ~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      +|.+.|-+++|||||+.++...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            6779999999999999998643

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=87.14  E-value=0.41  Score=32.08  Aligned_cols=29  Identities=31%  Similarity=0.535  Sum_probs=21.0

Q ss_pred             EEcCCCCcHHH-HHHHHH--HHhCCCeEEecc
Q psy5910          45 LVGPTGCGKTL-MVKTLA--KIINVPIIVVDA   73 (225)
Q Consensus        45 l~Gp~GtGKT~-la~~ia--~~~~~~~~~~~~   73 (225)
                      ++||..+|||+ |.+.+.  ...+..++.+++
T Consensus        12 I~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~   43 (141)
T d1xx6a1          12 IVGPMYSGKSEELIRRIRRAKIAKQKIQVFKP   43 (141)
T ss_dssp             EECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEeccccHHHHHHHHHHHHhhhcCCcEEEEEe
Confidence            78999999997 555553  334777777665

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.01  E-value=0.23  Score=39.72  Aligned_cols=25  Identities=20%  Similarity=0.429  Sum_probs=18.4

Q ss_pred             CCcEEEEcCCCCcHHHH-HHHHHHHh
Q psy5910          40 KSNILLVGPTGCGKTLM-VKTLAKII   64 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~l-a~~ia~~~   64 (225)
                      .+.+|+.+.+|||||++ +..++..+
T Consensus        16 ~g~~lv~A~AGsGKT~~l~~r~~~ll   41 (485)
T d1w36b1          16 QGERLIEASAGTGKTFTIAALYLRLL   41 (485)
T ss_dssp             SSCEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEcCchHHHHHHHHHHHHHH
Confidence            45778999999999964 45555554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=86.38  E-value=0.17  Score=38.21  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=19.1

Q ss_pred             CCcEEEEcCCCCcHHHHHHHHHHH
Q psy5910          40 KSNILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      ...+++.|++|+|||+++..++..
T Consensus        67 GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          67 GQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             TCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             CceEeeccCCCCChHHHHHHHHhh
Confidence            346889999999999998765443

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.36  E-value=0.24  Score=35.31  Aligned_cols=17  Identities=35%  Similarity=0.456  Sum_probs=14.7

Q ss_pred             eCCcEEEEcCCCCcHHH
Q psy5910          39 EKSNILLVGPTGCGKTL   55 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~   55 (225)
                      ..+++++.+|+|+|||.
T Consensus        37 ~g~dvi~~a~tGsGKTl   53 (206)
T d1s2ma1          37 TGRDILARAKNGTGKTA   53 (206)
T ss_dssp             HTCCEEEECCTTSCHHH
T ss_pred             cCCCEEEecCCcchhhh
Confidence            34689999999999995

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.19  E-value=0.17  Score=39.36  Aligned_cols=24  Identities=17%  Similarity=0.339  Sum_probs=21.0

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      |+|.+.|..|+|||||+.++....
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHC
Confidence            589999999999999999887544

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.38  E-value=0.15  Score=36.35  Aligned_cols=18  Identities=28%  Similarity=0.322  Sum_probs=15.3

Q ss_pred             eCCcEEEEcCCCCcHHHH
Q psy5910          39 EKSNILLVGPTGCGKTLM   56 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~l   56 (225)
                      ...++++..|+|||||..
T Consensus        37 ~G~dvii~a~TGSGKTla   54 (209)
T d1q0ua_          37 RGESMVGQSQTGTGKTHA   54 (209)
T ss_dssp             HTCCEEEECCSSHHHHHH
T ss_pred             CCCCeEeeccccccccee
Confidence            346899999999999973

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.86  E-value=0.27  Score=35.27  Aligned_cols=18  Identities=33%  Similarity=0.447  Sum_probs=15.4

Q ss_pred             eCCcEEEEcCCCCcHHHH
Q psy5910          39 EKSNILLVGPTGCGKTLM   56 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~l   56 (225)
                      ..+.+++..|+|||||..
T Consensus        46 ~g~dvl~~a~TGsGKT~a   63 (212)
T d1qdea_          46 EGHDVLAQAQSGTGKTGT   63 (212)
T ss_dssp             TTCCEEEECCTTSSHHHH
T ss_pred             cCCCEEeecccccchhhh
Confidence            356899999999999974

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=0.29  Score=34.95  Aligned_cols=18  Identities=28%  Similarity=0.386  Sum_probs=15.2

Q ss_pred             eCCcEEEEcCCCCcHHHH
Q psy5910          39 EKSNILLVGPTGCGKTLM   56 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~l   56 (225)
                      ..+++++..|+|+|||..
T Consensus        37 ~g~dvl~~A~TGsGKTla   54 (207)
T d1t6na_          37 LGMDVLCQAKSGMGKTAV   54 (207)
T ss_dssp             TTCCEEEECCTTSCHHHH
T ss_pred             cCCCeEEEeccccccccc
Confidence            356899999999999864

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=0.29  Score=35.33  Aligned_cols=18  Identities=22%  Similarity=0.409  Sum_probs=15.5

Q ss_pred             eCCcEEEEcCCCCcHHHH
Q psy5910          39 EKSNILLVGPTGCGKTLM   56 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~l   56 (225)
                      ..+++++..|+|||||..
T Consensus        48 ~g~dvl~~a~TGsGKTla   65 (218)
T d2g9na1          48 KGYDVIAQAQSGTGKTAT   65 (218)
T ss_dssp             HTCCEEEECCTTSSHHHH
T ss_pred             cCCCEEEEcccchhhhhh
Confidence            456899999999999974

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=83.46  E-value=0.24  Score=37.47  Aligned_cols=30  Identities=27%  Similarity=0.462  Sum_probs=22.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH-----hCCCeEEec
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKI-----INVPIIVVD   72 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~-----~~~~~~~~~   72 (225)
                      +=|+|-|.+|||||-.++.+.     .+.||.+++
T Consensus        13 iGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~   47 (296)
T d1ni3a1          13 TGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID   47 (296)
T ss_dssp             EEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC
T ss_pred             EEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCcc
Confidence            339999999999999998753     245555443

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.21  E-value=0.34  Score=34.52  Aligned_cols=18  Identities=28%  Similarity=0.346  Sum_probs=15.2

Q ss_pred             eCCcEEEEcCCCCcHHHH
Q psy5910          39 EKSNILLVGPTGCGKTLM   56 (225)
Q Consensus        39 ~~~~vLl~Gp~GtGKT~l   56 (225)
                      ..+.+++..|+|+|||..
T Consensus        39 ~g~dvl~~a~TGsGKTla   56 (206)
T d1veca_          39 SGRDILARAKNGTGKSGA   56 (206)
T ss_dssp             TTCCEEEECCSSSTTHHH
T ss_pred             cCCCEEeeccCccccccc
Confidence            346899999999999953

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=80.57  E-value=0.34  Score=36.89  Aligned_cols=20  Identities=25%  Similarity=0.351  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q psy5910          43 ILLVGPTGCGKTLMVKTLAK   62 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~   62 (225)
                      |=|+|-|.+|||||-.++.+
T Consensus         3 v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC
T ss_pred             EeEECCCCCCHHHHHHHHHC
Confidence            34899999999999998853

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=80.48  E-value=0.4  Score=35.02  Aligned_cols=16  Identities=38%  Similarity=0.601  Sum_probs=14.5

Q ss_pred             CCcEEEEcCCCCcHHH
Q psy5910          40 KSNILLVGPTGCGKTL   55 (225)
Q Consensus        40 ~~~vLl~Gp~GtGKT~   55 (225)
                      ..++++..|+|||||.
T Consensus        58 g~dvvi~a~TGsGKTl   73 (238)
T d1wrba1          58 HRDIMACAQTGSGKTA   73 (238)
T ss_dssp             TCCEEEECCTTSSHHH
T ss_pred             CCCEEEECCCCCCcce
Confidence            4689999999999997

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=80.45  E-value=0.53  Score=35.33  Aligned_cols=24  Identities=29%  Similarity=0.427  Sum_probs=18.5

Q ss_pred             CcEEEEcCCCCcHHHHHHHHHHHh
Q psy5910          41 SNILLVGPTGCGKTLMVKTLAKII   64 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia~~~   64 (225)
                      ++.++.-|+|+|||.++-+++..+
T Consensus       129 ~~~il~~pTGsGKT~i~~~i~~~~  152 (282)
T d1rifa_         129 RRRILNLPTSAGRSLIQALLARYY  152 (282)
T ss_dssp             SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred             CCceeEEEcccCccHHHHHHHHHh
Confidence            456777899999998887777543

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.27  E-value=0.47  Score=33.74  Aligned_cols=21  Identities=33%  Similarity=0.305  Sum_probs=16.6

Q ss_pred             CcEEEEcCCCCcHHHHHHHHH
Q psy5910          41 SNILLVGPTGCGKTLMVKTLA   61 (225)
Q Consensus        41 ~~vLl~Gp~GtGKT~la~~ia   61 (225)
                      ..+++..|+|+|||..+-...
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~   63 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPL   63 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccc
Confidence            478899999999998664433

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.11  E-value=0.43  Score=35.83  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q psy5910          43 ILLVGPTGCGKTLMVKTLAKI   63 (225)
Q Consensus        43 vLl~Gp~GtGKT~la~~ia~~   63 (225)
                      |-+.||.+||||+|+..+...
T Consensus        35 vsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          35 VAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            338999999999999988754