Psyllid ID: psy5919

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------
MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNCEPTNA
cEEEEEEEEEccccccccccccccccccccEEEEccEEEEEEcccccccEEEEEEEcccEEEccccccccccccccccccccccccccEEEEEEEcccccEEEEEEEEEccEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEEEcccccccccEEEEEEEEccccHHHHHHHHHccccccccccEEcccccccEEEEEEccccccEEEEEccEEEEcccccccccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccc
ccEEEEEEcHHHccccccccccccccccccccccccHHHHcccccccccEEEEEcccccccccccccccccHHcccHHccccccccccEEEEEEEcccccEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEcccEEEEcccccccEEEEEEEcHHHHHHHHHHHHcccEEccccccccccccEEEEEEEEcccccccEEEcccccEEcccccccccccEEEEEEEEcHHHHHccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHcccHHHHHHHHHHHHHHccccccEEEEccccccccccccHHHHHHHHHHHHcHHEEEHHHHHHccccccEccccccc
MFSMNIVTidffmskpiahfdpvhSELRNLVIQKVPVIRvfgnniegkktcvfvhgvfpylyipfhhepitetiVHSELRNLVIQKVPVIrvfgnnvegkkTCVFvhgvfpylyipfhhepiTETMLQQLAASIDKALNIALGYKDSVQHVFHISickkfpmygyhadeRTFLKILLYEPYHMSKLEDLLLngavfnerfqpyeshipYILQFCIDynlygmsniefnmvkfrsdsetslpklshcqleadVKAESIVVDMaandsdvatsggiTRYLSDVLLNSMRAILlgqephllmdpdvysmqdLLDVKSGALYLKLKDLVSACSIFRMRAILlgqephllmdpdvysmqdLLDVKSGALYLKLKDLVSACsshvynceptna
MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDMaandsdvatsgGITRYLSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACsshvynceptna
MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNCEPTNA
***MNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR*********LSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNC*****
MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETI*********IQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDK************QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSET*LPKLSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILL*****************LLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNCEPTNA
MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNCEPTNA
MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAI************DVYSMQDLLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNCE****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNCEPTNA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query387 2.2.26 [Sep-21-2011]
O60673 3130 DNA polymerase zeta catal yes N/A 0.470 0.058 0.397 2e-37
Q61493 3122 DNA polymerase zeta catal yes N/A 0.462 0.057 0.400 8e-37
Q9P6L6 1480 DNA polymerase zeta catal yes N/A 0.434 0.113 0.389 5e-26
P14284 1504 DNA polymerase zeta catal yes N/A 0.498 0.128 0.315 5e-22
P28339 1106 DNA polymerase delta cata no N/A 0.408 0.142 0.305 4e-15
O54747 1103 DNA polymerase delta cata no N/A 0.413 0.145 0.314 6e-15
P52431 1105 DNA polymerase delta cata no N/A 0.413 0.144 0.314 1e-14
P97283 1103 DNA polymerase delta cata N/A N/A 0.413 0.145 0.297 4e-14
P28340 1107 DNA polymerase delta cata no N/A 0.423 0.148 0.284 4e-13
P54358 1092 DNA polymerase delta cata no N/A 0.434 0.153 0.310 9e-13
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1 SV=2 Back     alignment and function desciption
 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 127/234 (54%), Gaps = 52/234 (22%)

Query: 1   MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
           MFS+ IVT D++M+ P+   D   S L    ++KVPV+RVFG    G+KTC+ +HG+FPY
Sbjct: 1   MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60

Query: 61  LYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE 120
           LY+P                                                 Y  +  +
Sbjct: 61  LYVP-------------------------------------------------YDGYGQQ 71

Query: 121 PITETMLQQLAASIDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYE 179
           P  E+ L Q+A SID+ALN+ALG   S  QHVF +S+    P YGYH  ER F+KI LY 
Sbjct: 72  P--ESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYN 129

Query: 180 PYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
           P  + ++ +LL +GA+ N+ +QP+E+HIPY+LQ  IDYNLYGM+ I    VKFR
Sbjct: 130 PTMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Interacts with MAD2L2 to form the error prone DNA polymerase zeta involved in translesion DNA synthesis.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1 SV=3 Back     alignment and function description
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1 Back     alignment and function description
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1 Back     alignment and function description
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1 SV=1 Back     alignment and function description
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1 PE=2 SV=1 Back     alignment and function description
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1 SV=2 Back     alignment and function description
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus GN=POLD1 PE=2 SV=1 Back     alignment and function description
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1 SV=2 Back     alignment and function description
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster GN=DNApol-delta PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
189234256 1518 PREDICTED: similar to DNA polymerase zet 0.524 0.133 0.451 5e-44
443719045349 hypothetical protein CAPTEDRAFT_106116 [ 0.410 0.455 0.561 1e-43
307187392 2051 DNA polymerase zeta catalytic subunit [C 0.635 0.119 0.390 2e-43
390338524 3741 PREDICTED: uncharacterized protein LOC58 0.496 0.051 0.472 2e-43
332027078 1974 DNA polymerase zeta catalytic subunit [A 0.664 0.130 0.352 4e-43
170055192 1959 DNA polymerase zeta catalytic subunit [C 0.537 0.106 0.370 1e-42
326676933 1615 PREDICTED: DNA polymerase zeta catalytic 0.485 0.116 0.383 8e-42
383864467 1647 PREDICTED: DNA polymerase zeta catalytic 0.532 0.125 0.362 3e-41
307203010 1867 DNA polymerase zeta catalytic subunit [H 0.501 0.103 0.444 3e-41
157124378 2080 DNA polymerase zeta catalytic subunit [A 0.537 0.1 0.375 3e-41
>gi|189234256|ref|XP_001811647.1| PREDICTED: similar to DNA polymerase zeta catalytic subunit [Tribolium castaneum] gi|270002615|gb|EEZ99062.1| hypothetical protein TcasGA2_TC004938 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 94/208 (45%), Positives = 129/208 (62%), Gaps = 5/208 (2%)

Query: 74  IVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAAS 133
           I++S+ R   I +VP IR+FG+  EG+K C+ VHGVFPYLYIP+       ++  Q+AAS
Sbjct: 25  IMYSDFRGSSISQVPTIRIFGSTAEGQKICLHVHGVFPYLYIPYDGSEDCNSLKYQIAAS 84

Query: 134 IDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLN 192
           IDKALN++ G   ++ QHV+ I++    P YGYH  E  F KI LY P  + K+ ++L +
Sbjct: 85  IDKALNVSFGQASALTQHVYKITLVSGIPFYGYHTREHQFFKIYLYNPNLIRKVGNMLQS 144

Query: 193 GAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADV 252
             +    +QP+ESHIPYILQF IDYNL+GMS I  N +KFR DS     K S+ QLEAD 
Sbjct: 145 EVIHGRLYQPHESHIPYILQFMIDYNLHGMSRILLNDLKFRDDSH----KQSYSQLEADT 200

Query: 253 KAESIVVDMAANDSDVATSGGITRYLSD 280
             E+I+  +   D  +  + GI     D
Sbjct: 201 LCENILNRLEIADGKMGVNPGIAALWED 228

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|443719045|gb|ELU09366.1| hypothetical protein CAPTEDRAFT_106116 [Capitella teleta] Back     alignment and taxonomy information
>gi|307187392|gb|EFN72515.1| DNA polymerase zeta catalytic subunit [Camponotus floridanus] Back     alignment and taxonomy information
>gi|390338524|ref|XP_786092.3| PREDICTED: uncharacterized protein LOC580974 [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|332027078|gb|EGI67174.1| DNA polymerase zeta catalytic subunit [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|170055192|ref|XP_001863472.1| DNA polymerase zeta catalytic subunit [Culex quinquefasciatus] gi|167875216|gb|EDS38599.1| DNA polymerase zeta catalytic subunit [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|326676933|ref|XP_002665692.2| PREDICTED: DNA polymerase zeta catalytic subunit [Danio rerio] Back     alignment and taxonomy information
>gi|383864467|ref|XP_003707700.1| PREDICTED: DNA polymerase zeta catalytic subunit-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|307203010|gb|EFN82226.1| DNA polymerase zeta catalytic subunit [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|157124378|ref|XP_001660448.1| DNA polymerase zeta catalytic subunit [Aedes aegypti] gi|108874011|gb|EAT38236.1| AAEL009851-PA [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query387
ZFIN|ZDB-GENE-050302-55 2953 rev3l "REV3-like, catalytic su 0.441 0.057 0.465 1.9e-39
FB|FBgn0002891 2130 mus205 "mutagen-sensitive 205" 0.516 0.093 0.442 3.5e-39
MGI|MGI:1337131 3122 Rev3l "REV3-like, catalytic su 0.405 0.050 0.515 5.8e-39
UNIPROTKB|O60673 3130 REV3L "DNA polymerase zeta cat 0.405 0.050 0.509 9.5e-39
UNIPROTKB|F1LMP6 3118 Rev3l "DNA polymerase" [Rattus 0.413 0.051 0.512 1.9e-38
UNIPROTKB|F1M8G6 3132 Rev3l "DNA polymerase" [Rattus 0.413 0.051 0.512 2e-38
UNIPROTKB|E1BPY8 3133 REV3L "DNA polymerase" [Bos ta 0.413 0.051 0.5 3.2e-38
UNIPROTKB|F1P7D5 3136 REV3L "DNA polymerase" [Canis 0.387 0.047 0.513 2.9e-37
UNIPROTKB|F1NQT0 3100 REV3L "DNA polymerase" [Gallus 0.343 0.042 0.532 3.9e-33
ASPGD|ASPL0000070569 1681 uvsI [Emericella nidulans (tax 0.413 0.095 0.422 4.9e-32
ZFIN|ZDB-GENE-050302-55 rev3l "REV3-like, catalytic subunit of DNA polymerase zeta (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 429 (156.1 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 81/174 (46%), Positives = 117/174 (67%)

Query:    69 PITET-IVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETM 126
             PI E  + +SE R   ++KVPV+R+FG    G+KTC+ +HG+FPY+Y+P+       +  
Sbjct:    16 PIRELDVCYSEFRESDVKKVPVVRIFGATPAGQKTCLHLHGIFPYIYVPYDGFGQEADRY 75

Query:   127 LQQLAASIDKALNIALGYKDS-VQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSK 185
             L+Q+A SID+ALNI++G   S VQH+F + +    P YGYH  E++F+KI LY P  + +
Sbjct:    76 LRQVAYSIDRALNISMGNPSSNVQHIFKVVLVTGMPFYGYHMREKSFMKIFLYNPQMVKR 135

Query:   186 LEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETS 239
             + +LL  GAV N+ FQP+E+HIP++LQ  IDYNLYGM+ I    VKFR    T+
Sbjct:   136 VSELLQAGAVMNKSFQPHEAHIPFLLQLFIDYNLYGMNMISLAAVKFRKSRATA 189
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0006260 "DNA replication" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0016740 "transferase activity" evidence=IEA
GO:0016779 "nucleotidyltransferase activity" evidence=IEA
FB|FBgn0002891 mus205 "mutagen-sensitive 205" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1337131 Rev3l "REV3-like, catalytic subunit of DNA polymerase zeta RAD54 like (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|O60673 REV3L "DNA polymerase zeta catalytic subunit" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1LMP6 Rev3l "DNA polymerase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1M8G6 Rev3l "DNA polymerase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPY8 REV3L "DNA polymerase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P7D5 REV3L "DNA polymerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQT0 REV3L "DNA polymerase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ASPGD|ASPL0000070569 uvsI [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
PTZ00166 1054 PTZ00166, PTZ00166, DNA polymerase delta catalytic 3e-23
pfam13901202 pfam13901, DUF4206, Domain of unknown function (DU 4e-09
COG0417 792 COG0417, PolB, DNA polymerase elongation subunit ( 2e-04
PTZ00166 1054 PTZ00166, PTZ00166, DNA polymerase delta catalytic 7e-04
pfam13901202 pfam13901, DUF4206, Domain of unknown function (DU 7e-04
>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information 
 Score =  101 bits (253), Expect = 3e-23
 Identities = 57/189 (30%), Positives = 85/189 (44%), Gaps = 15/189 (7%)

Query: 87  VPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKD 146
           VP+IR++G   EG    V VH  FPY YI            Q+L   ++  L+    +K 
Sbjct: 74  VPIIRLYGVTKEGHSVLVNVHNFFPYFYIEAPPN-FLPEDSQKLKRELNAQLSEQSQFKK 132

Query: 147 SVQHVFHISICKKFPMYGYHAD-ERTFLKILLYEPYHMSKLEDLLLNGAVFNER------ 199
               V  I I KK  +  Y  + E+ FLKI +  P  + +L  L+ +G V          
Sbjct: 133 YQNTVLDIEIVKKESLMYYKGNGEKDFLKITVQLPKMVPRLRSLIESGVVVCGGGWDGIR 192

Query: 200 -FQPYESHIPYILQFCIDYNLYGMSNIEF--NMVKFRSDSETSLPKLSHCQLEADVKAES 256
            FQ YES++P++L+F ID N+ G S +       K R   +    K S CQ+E D   E 
Sbjct: 193 LFQTYESNVPFVLRFLIDNNITGGSWLTLPKGKYKIRPPKK----KTSTCQIEVDCSYED 248

Query: 257 IVVDMAAND 265
           ++      +
Sbjct: 249 LIPLPPEGE 257

Length = 1054
>gnl|CDD|222444 pfam13901, DUF4206, Domain of unknown function (DUF4206) Back     alignment and domain information
>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>gnl|CDD|222444 pfam13901, DUF4206, Domain of unknown function (DUF4206) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 387
PTZ00166 1054 DNA polymerase delta catalytic subunit; Provisiona 100.0
KOG0969|consensus 1066 100.0
PF13901202 DUF4206: Domain of unknown function (DUF4206) 99.93
KOG0968|consensus 1488 99.9
KOG1829|consensus580 99.87
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 99.81
PRK05761 787 DNA polymerase I; Reviewed 99.48
PRK05762 786 DNA polymerase II; Reviewed 99.34
COG0417 792 PolB DNA polymerase elongation subunit (family B) 98.89
KOG0969|consensus 1066 98.82
PTZ00166 1054 DNA polymerase delta catalytic subunit; Provisiona 97.8
PF13901202 DUF4206: Domain of unknown function (DUF4206) 97.38
KOG1798|consensus 2173 97.2
TIGR00592 1172 pol2 DNA polymerase (pol2). This family is based o 97.05
PF03104325 DNA_pol_B_exo1: DNA polymerase family B, exonuclea 96.11
PRK05762 786 DNA polymerase II; Reviewed 95.99
KOG0968|consensus 1488 95.15
KOG0970|consensus 1429 93.66
KOG1829|consensus580 85.22
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information 
Probab=100.00  E-value=9.8e-36  Score=330.36  Aligned_cols=163  Identities=33%  Similarity=0.526  Sum_probs=122.5

Q ss_pred             EEecCCCCEEEEEEceeeeEEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcceEEEEEEEEeeceecccC-CceE
Q psy5919          93 FGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHA-DERT  171 (387)
Q Consensus        93 FG~T~~G~svcv~Vhgf~PYfYv~~~~~~~~~~~l~~l~~~l~~~l~~s~~~~~~~~~V~~ie~V~~~~~YGY~~-~~~~  171 (387)
                      ||+|++|+|||||||||+|||||++|+++..+ ++..+...|++.+..+.........|.+|++|+|++||||++ ++.+
T Consensus        80 FGvTe~G~SV~v~V~gF~PYFYV~~p~~~~~~-~~~~~~~~L~~~l~~~~~~~~~~~~V~~VeiV~k~sl~gY~~~~~~~  158 (1054)
T PTZ00166         80 YGVTKEGHSVLVNVHNFFPYFYIEAPPNFLPE-DSQKLKRELNAQLSEQSQFKKYQNTVLDIEIVKKESLMYYKGNGEKD  158 (1054)
T ss_pred             EEecCCCCEEEEEEeCCceEEEEecCCCCCHH-HHHHHHHHHHHHHhhcccccccCCceEEEEEEEeeeeceeCCCCcee
Confidence            44445555555555555555555555544332 455666666655443210001346899999999999999997 5789


Q ss_pred             EEEEEecCcchHHHHHHHHhCCcccC-------CccceeccCcchhhhhhhhcCCcceeeEEecceeEEecCCCCCCCCC
Q psy5919         172 FLKILLYEPYHMSKLEDLLLNGAVFN-------ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLS  244 (387)
Q Consensus       172 FlKI~~~~P~~v~~l~~lL~~g~~~~-------~~~q~yEahIp~~lrFmiD~nL~G~~wi~~~~~~~r~~~~~~~~r~S  244 (387)
                      |+||++.+|.+++++|++|++|..++       ..+++|||||||++|||+|+||.||+||+++++++.....+  .+.|
T Consensus       159 flKIt~~~P~~v~klR~~Le~g~~~~~~~~~~~~~~~vyEsnI~f~lRFmID~~I~g~~Wi~i~~~~~~~~~~~--~~~s  236 (1054)
T PTZ00166        159 FLKITVQLPKMVPRLRSLIESGVVVCGGGWDGIRLFQTYESNVPFVLRFLIDNNITGGSWLTLPKGKYKIRPPK--KKTS  236 (1054)
T ss_pred             EEEEEEcCHHHHHHHHHHHHcCCcccccccccccccceeecCCCHHHHHHhccCCCceeEEEecCcceeecccc--cCCC
Confidence            99999999999999999999986432       34799999999999999999999999999999888655432  5789


Q ss_pred             ccceeeEeecccce
Q psy5919         245 HCQLEADVKAESIV  258 (387)
Q Consensus       245 ~C~lEiDv~~~~Il  258 (387)
                      +|++|++|.+.+|.
T Consensus       237 ~c~~E~~~~~~~l~  250 (1054)
T PTZ00166        237 TCQIEVDCSYEDLI  250 (1054)
T ss_pred             cceEEEEEehhhee
Confidence            99999999998876

>KOG0969|consensus Back     alignment and domain information
>PF13901 DUF4206: Domain of unknown function (DUF4206) Back     alignment and domain information
>KOG0968|consensus Back     alignment and domain information
>KOG1829|consensus Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>PRK05761 DNA polymerase I; Reviewed Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG0969|consensus Back     alignment and domain information
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional Back     alignment and domain information
>PF13901 DUF4206: Domain of unknown function (DUF4206) Back     alignment and domain information
>KOG1798|consensus Back     alignment and domain information
>TIGR00592 pol2 DNA polymerase (pol2) Back     alignment and domain information
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included Back     alignment and domain information
>PRK05762 DNA polymerase II; Reviewed Back     alignment and domain information
>KOG0968|consensus Back     alignment and domain information
>KOG0970|consensus Back     alignment and domain information
>KOG1829|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
3iay_A 919 Ternary Complex Of Dna Polymerase Delta Length = 91 6e-06
>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta Length = 919 Back     alignment and structure 
Iteration: 1

 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 18/184 (9%)
Query: 89  VIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGY-KDS 147
           V+R FG   EG      V G   YLY+P  +            A+  + +N  + Y  ++
Sbjct: 70  VVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSS---------DANDQEQINKFVHYLNET 120
Query: 148 VQHVF-HISICKKFPMYGYHADER-TFLKILLYEPYHMSKLEDLLLNGAV-FNERFQPYE 204
             H    I +  K  ++GY  D +  F KI +  P+ ++KL      G + FN  F    
Sbjct: 121 FDHAIDSIEVVSKQSIWGYSGDTKLPFWKIYVTYPHMVNKLRTAFERGHLSFNSWFSNGT 180
Query: 205 S---HIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDM 261
           +   +I Y L+  +D  + GMS I     K+      +  ++S CQLE  +   +++   
Sbjct: 181 TTYDNIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNN--RVSSCQLEVSINYRNLIAHP 238
Query: 262 AAND 265
           A  D
Sbjct: 239 AEGD 242
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query387
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 2e-32
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 6e-30
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 4e-17
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 1e-05
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 4e-16
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 3e-04
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 1e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 Back     alignment and structure
 Score =  128 bits (322), Expect = 2e-32
 Identities = 29/203 (14%), Positives = 67/203 (33%), Gaps = 13/203 (6%)

Query: 65  FHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHH--EPI 122
            H   +     H+   + +     VI + G   EG +  V V+G   Y Y+        +
Sbjct: 115 EHAYGMRAAQFHARFMDAITPTGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHL 174

Query: 123 TETMLQQLAASIDKALNIALG--YKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEP 180
                + L   +  AL  + G  ++      F   + ++  +Y Y      F ++ +   
Sbjct: 175 QCRAPRDLCERMAAALRESPGASFRGISADHFEAEVVERTDVYYYETRPALFYRVYVRSG 234

Query: 181 YHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLY-GMSNIEFNMVKF--RSDSE 237
             +S L D            + YE  +    +F +D   +           +    +   
Sbjct: 235 RVLSYLCDNFCPA------IKKYEGGVDATTRFILDNPGFVTFGWYRLKPGRNNTLAQPR 288

Query: 238 TSLPKLSHCQLEADVKAESIVVD 260
             +   +   +E +  A+++ ++
Sbjct: 289 APMAFGTSSDVEFNCTADNLAIE 311
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 99.96
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 99.9
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 99.76
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 99.63
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 99.56
1noy_A 388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 98.46
2gv9_A 1193 DNA polymerase; polymerase alpha fold, transferase 97.64
1s5j_A 847 DNA polymerase I; replication, disulfide bonds, tr 97.36
1qht_A 775 Protein (DNA polymerase); archaea, hyperthermostab 97.21
3iay_A 919 DNA polymerase delta catalytic subunit; protein-DN 96.61
3k59_A 786 POL II, DNA polymerase II; protein-DNA complex, DN 95.42
1noy_A388 Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas 93.46
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
Probab=99.96  E-value=5.3e-29  Score=273.14  Aligned_cols=161  Identities=25%  Similarity=0.470  Sum_probs=131.7

Q ss_pred             CCccEEEEEEecCCCCEEEEEEceeeeEEEEecCCC---CchHHHHHHHHHHHHHHHHHHcCCCCCcceEEEEEEEEeec
Q psy5919          85 QKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE---PITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFP  161 (387)
Q Consensus        85 ~~~pvIrlFG~T~~G~svcv~Vhgf~PYfYv~~~~~---~~~~~~l~~l~~~l~~~l~~s~~~~~~~~~V~~ie~V~~~~  161 (387)
                      ..+|+||+||+|++|+|||||||||.|||||++|++   +..+ .+.++...|++    .+     ...+.+|++|+|++
T Consensus        66 ~~~~virlfg~t~~G~sv~v~V~gf~PYFYv~~~~~~~~~~~~-~~~~~~~~L~~----~~-----~~~v~~ve~v~K~~  135 (919)
T 3iay_A           66 NTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSSDANDQE-QINKFVHYLNE----TF-----DHAIDSIEVVSKQS  135 (919)
T ss_dssp             TBCEEEEEEEEETTSCEEEEEEESCCCEEEEECCSSGGGGCHH-HHHHHHHHHHT----TT-----TTCEEEEEEEEEEE
T ss_pred             CCeeEEEEEEEeCCCCEEEEEECCcCCEEEEEcCCcccccchh-HHHHHHHHHHH----hh-----cCCceEEEEEeeec
Confidence            356788888888889999999999999999988876   4332 45555554433    22     35699999999999


Q ss_pred             eecccC-CceEEEEEEecCcchHHHHHHHHhCCcc-cC----CccceeccCcchhhhhhhhcCCcceeeEEecceeEEec
Q psy5919         162 MYGYHA-DERTFLKILLYEPYHMSKLEDLLLNGAV-FN----ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSD  235 (387)
Q Consensus       162 ~YGY~~-~~~~FlKI~~~~P~~v~~l~~lL~~g~~-~~----~~~q~yEahIp~~lrFmiD~nL~G~~wi~~~~~~~r~~  235 (387)
                      +|||++ .+.+|+||++.+|..++++++.|++|.+ ++    ..+++|| ||||.+|||+|+||.||+|++++++.|+..
T Consensus       136 l~gy~~~~~~~~lKI~~~~p~~v~~~r~~l~~g~~~~~~~~~~~~~~yE-dI~~~~RfliD~~I~g~~W~~i~~~~~~~~  214 (919)
T 3iay_A          136 IWGYSGDTKLPFWKIYVTYPHMVNKLRTAFERGHLSFNSWFSNGTTTYD-NIAYTLRLMVDCGIVGMSWITLPKGKYSMI  214 (919)
T ss_dssp             SSCCSCSCCEEEEEEEESSTTHHHHHHHHHHHSCCCGGGSSTTCCCCBC-CCCHHHHHHHHHTCCTTCEEEECTTSEEEC
T ss_pred             cccCCCCCceEEEEEEEcCHHHHHHHHHHHHccccccccccccCccccc-CCChHhhheeecCCccceEEEEecCcceec
Confidence            999995 5789999999999999999999998733 22    3479999 999999999999999999999998888765


Q ss_pred             CCCCCCCCCccceeeEeecccce
Q psy5919         236 SETSLPKLSHCQLEADVKAESIV  258 (387)
Q Consensus       236 ~~~~~~r~S~C~lEiDv~~~~Il  258 (387)
                      ...  .+.|+|++|++|.+.+++
T Consensus       215 ~~~--~~~S~c~~Ev~v~~~~l~  235 (919)
T 3iay_A          215 EPN--NRVSSCQLEVSINYRNLI  235 (919)
T ss_dssp             CGG--GCCBCCSEEEEEETTTCE
T ss_pred             ccc--CCccceeEEEEeeccccc
Confidence            332  478999999999988887
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Back     alignment and structure
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Back     alignment and structure
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Back     alignment and structure
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Back     alignment and structure
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Back     alignment and structure
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 387
d1tgoa1347 c.55.3.5 (A:1-347) Exonuclease domain of family B 9e-13
d1tgoa1347 c.55.3.5 (A:1-347) Exonuclease domain of family B 1e-04
d1s5ja1 410 c.55.3.5 (A:40-449) Exonuclease domain of family B 3e-11
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 347 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

 Score = 66.4 bits (161), Expect = 9e-13
 Identities = 26/140 (18%), Positives = 43/140 (30%), Gaps = 19/140 (13%)

Query: 87  VPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKD 146
            PVIR+F     G+    +     PY+Y     +           ++I+    I      
Sbjct: 13  KPVIRIFKKE-NGEFKIDYDRNFEPYIYALLKDD-----------SAIEDVKKITAERHG 60

Query: 147 SVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESH 206
           +   V      KK     +        K+    P  +  + D +            YE  
Sbjct: 61  TTVRVVRAEKVKKK----FLGRPIEVWKLYFTHPQDVPAIRDKIKEH---PAVVDIYEYD 113

Query: 207 IPYILQFCIDYNLYGMSNIE 226
           IP+  ++ ID  L  M   E
Sbjct: 114 IPFAKRYLIDKGLIPMEGDE 133
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 347 Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Length = 410 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query387
d1s5ja1 410 Exonuclease domain of family B DNA polymerases {Su 99.76
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 99.75
d1q8ia1 388 Exonuclease domain of family B DNA polymerases {Es 99.57
d1tgoa1347 Exonuclease domain of family B DNA polymerases {Ar 98.06
d1s5ja1410 Exonuclease domain of family B DNA polymerases {Su 97.18
d1noya_ 372 Exonuclease domain of family B DNA polymerases {Ba 96.32
d1q8ia1388 Exonuclease domain of family B DNA polymerases {Es 95.58
d1ih7a1 375 Exonuclease domain of family B DNA polymerases {Ba 94.76
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.76  E-value=2.1e-19  Score=179.17  Aligned_cols=124  Identities=18%  Similarity=0.268  Sum_probs=101.8

Q ss_pred             cCCccEEEEEEecCCCCEEEEEEceeeeEEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcceEEEEEEEEeecee
Q psy5919          84 IQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMY  163 (387)
Q Consensus        84 ~~~~pvIrlFG~T~~G~svcv~Vhgf~PYfYv~~~~~~~~~~~l~~l~~~l~~~l~~s~~~~~~~~~V~~ie~V~~~~~Y  163 (387)
                      ..+.|||++||+|.+|.+||+.++||.|||||..|..     .+.++..        ..    ....+.+++.|++..+|
T Consensus        22 ~~~~~vi~~~g~~~~~~~v~~~~~gf~PYFyv~~~~~-----~~~~~~~--------~~----~~~~~~~~e~v~k~~~~   84 (410)
T d1s5ja1          22 KKGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPD-----KVGKIPK--------IV----RDPSFDHIETVSKIDPY   84 (410)
T ss_dssp             TTTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHH-----HHTTCHH--------HH----TCTTEEEEEEEEEECTT
T ss_pred             eCCEEEEEEEeecCCcEEEEEeCCCccceEEEECCcc-----hHHHHHH--------Hh----hhcccceEEEEEEEecc
Confidence            3578999999999999999999999999999987742     1111111        11    12457889999999998


Q ss_pred             cccCCceEEEEEEecCcchHHHHHHHHhCCcccCCccceeccCcchhhhhhhhcCCcceeeEEecceeEEec
Q psy5919         164 GYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSD  235 (387)
Q Consensus       164 GY~~~~~~FlKI~~~~P~~v~~l~~lL~~g~~~~~~~q~yEahIp~~lrFmiD~nL~G~~wi~~~~~~~r~~  235 (387)
                      +|  ++.+|+||++.+|..++++|+.+         .++|||+|+|..|||+|+||.||+|+.+++.+.+..
T Consensus        85 ~~--~~~~~~ki~~~~p~~v~~~r~~~---------~~~~EadI~~~~RfliD~~l~~~~w~~~~~~~~~~~  145 (410)
T d1s5ja1          85 TW--NKFKLTKIVVRDPLAVRRLRNDV---------PKAYEAHIKYFNNYMYDIGLIPGMPYVVKNGKLESV  145 (410)
T ss_dssp             TC--CEEEEEEEEESSHHHHHHHTTSS---------SCEESCSSCHHHHHHHHHTCCTTSEEEEETTEEEEC
T ss_pred             CC--cceeEEEEEEcCHHHHHHHHHHh---------hhhcccccCchhcEEEEcCCccceEEEecCCccccc
Confidence            75  46789999999999999988754         369999999999999999999999999998876654
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Back     information, alignment and structure
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} Back     information, alignment and structure
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} Back     information, alignment and structure
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} Back     information, alignment and structure