Psyllid ID: psy593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHRIKPEKPVKTT
Secondary Structure (PSIPRED)
cccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccHccccccccccccccc
Coil and Loop (DISEMBL)
MFRRKAFLHWYTVEgmdefefheagaNVEDLICEYQQYQEASIEDTVEIatsddekgdhrikpekpvktt
Flexible Loop (DISEMBL)
mfrrkaflhwYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIatsddekgdhrikpekpvktt
Low Complexity Region (SEG)
MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHRIKPEKPVKTT
Disordered region (IsUnstruct)
****KAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI***************************
Disordered Region (DISOPRED)
*FRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE******************************
Disordered Region (DISEMBL)
MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIA********************
Disordered Region (DISPRO)
MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI***************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHRIKPEKPVKTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	70	2.2.26 [Sep-21-2011]
P02557	457	Tubulin beta chain OS=Sac	yes	N/A	0.771	0.118	0.655	2e-15
Q8SS99	439	Tubulin beta chain OS=Enc	yes	N/A	0.685	0.109	0.729	6e-15
Q4WA70	448	Tubulin beta chain OS=Neo	yes	N/A	0.685	0.107	0.75	8e-15
Q9GSR5	439	Tubulin beta chain OS=Enc	yes	N/A	0.685	0.109	0.708	9e-15
Q24829	439	Tubulin beta chain OS=Enc	N/A	N/A	0.685	0.109	0.708	9e-15
P52275	450	Tubulin beta-2 chain OS=C	yes	N/A	0.685	0.106	0.75	2e-14
P41799	447	Tubulin beta chain OS=Pha	N/A	N/A	0.614	0.096	0.790	2e-14
P12458	454	Tubulin beta-2 chain OS=P	N/A	N/A	0.642	0.099	0.755	2e-14
P16040	446	Tubulin beta chain OS=Ery	N/A	N/A	0.614	0.096	0.790	2e-14
P10875	449	Tubulin beta chain OS=Can	N/A	N/A	0.757	0.118	0.685	2e-14

>sp|P02557|TBB_YEAST Tubulin beta chain OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TUB2 PE=1 SV=2

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 45/58 (77%), Gaps = 4/58 (6%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MF+RKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQEA++ED  E+    DE GD
Sbjct: 388 MFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEV----DENGD 441

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q8SS99|TBB_ENCCU Tubulin beta chain OS=Encephalitozoon cuniculi (strain GB-M1) GN=TUB2 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/48 (72%), Positives = 40/48 (83%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE 48
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+IED  E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFSEAESNMNDLLSEYQQYQDATIEDAEE 435

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

>sp|Q4WA70|TBB_ASPFU Tubulin beta chain OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=AFUA_7G00250 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 36/48 (75%), Positives = 39/48 (81%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE 48
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQEASI D  E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLMSEYQQYQEASISDGEE 435

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q9GSR5|TBB_ENCIN Tubulin beta chain OS=Encephalitozoon intestinalis GN=TUB2 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 40/48 (83%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE 48
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A++ED  E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFSEAESNMNDLLSEYQQYQDATVEDAEE 435

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Encephalitozoon intestinalis (taxid: 58839)

>sp|Q24829|TBB_ENCHE Tubulin beta chain OS=Encephalitozoon hellem GN=TUB2 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 34/48 (70%), Positives = 40/48 (83%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE 48
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A++ED  E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFSEAESNMNDLLSEYQQYQDATVEDAEE 435

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Encephalitozoon hellem (taxid: 27973)

>sp|P52275|TBB2_CAEEL Tubulin beta-2 chain OS=Caenorhabditis elegans GN=tbb-2 PE=3 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/48 (75%), Positives = 40/48 (83%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE 48
           MFRRKAFLHWYT EGMDE EF EA +N+ DLI EYQQYQEA+ ED V+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATAEDDVD 435

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Caenorhabditis elegans (taxid: 6239)

>sp|P41799|TBB_PHANO Tubulin beta chain OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=tubB PE=1 SV=2

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI 43
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQEASI
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEASI 430

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) (taxid: 321614)

>sp|P12458|TBB2_PHYPO Tubulin beta-2 chain OS=Physarum polycephalum GN=BETC PE=2 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 34/45 (75%), Positives = 39/45 (86%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIED 45
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQEAS++D
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEASVDD 432

This is the major beta tubulin of mitotic spindle.

Physarum polycephalum (taxid: 5791)

>sp|P16040|TBB_ERYGR Tubulin beta chain OS=Erysiphe graminis subsp. hordei GN=TUB2 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/43 (79%), Positives = 37/43 (86%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI 43
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQEASI
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEASI 430

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Erysiphe graminis subsp. hordei (taxid: 62688)

>sp|P10875|TBB_CANAX Tubulin beta chain OS=Candida albicans GN=TUB2 PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/54 (68%), Positives = 43/54 (79%), Gaps = 1/54 (1%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDD 54
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQEASI D  E+  +D+
Sbjct: 388 MFRRKAFLHWYTSEGMDEMEFTEAESNMNDLVSEYQQYQEASI-DEEELEYADE 440

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha-chain.

Candida albicans (taxid: 5476)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
403308341	799	PREDICTED: LOW QUALITY PROTEIN: tubulin	0.828	0.072	0.620	5e-15
344237942	766	Tubulin beta-3 chain [Cricetulus griseus	0.828	0.075	0.620	5e-15
170574877	452	Tubulin beta-1 chain [Brugia malayi] gi|	0.914	0.141	0.593	2e-14
440908756	798	Tubulin beta-3 chain [Bos grunniens mutu	0.828	0.072	0.603	2e-14
426243492	796	PREDICTED: LOW QUALITY PROTEIN: tubulin	0.828	0.072	0.603	2e-14
30584215	798	Homo sapiens tubulin, beta, 4 [synthetic	0.828	0.072	0.603	2e-14
30582781	797	tubulin, beta, 4 [Homo sapiens] gi|61362	0.828	0.072	0.603	2e-14
397466576	796	PREDICTED: tubulin beta-3 chain [Pan pan	0.828	0.072	0.603	2e-14
348550877	873	PREDICTED: tubulin beta-3 chain-like [Ca	0.828	0.066	0.603	2e-14
345307397	803	PREDICTED: tubulin beta-3 chain-like [Or	0.828	0.072	0.603	2e-14

>gi|403308341|ref|XP_003945219.1| PREDICTED: LOW QUALITY PROTEIN: tubulin beta-3 chain [Saimiri boliviensis boliviensis]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   DDE+ +
Sbjct: 737 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDDEESE 794

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|344237942|gb|EGV94045.1| Tubulin beta-3 chain [Cricetulus griseus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   DDE+ +
Sbjct: 704 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDDEESE 761

Source: Cricetulus griseus

Species: Cricetulus griseus

Genus: Cricetulus

Family: Cricetidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|170574877|ref|XP_001893005.1| Tubulin beta-1 chain [Brugia malayi] gi|158601187|gb|EDP38156.1| Tubulin beta-1 chain, putative [Brugia malayi]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/64 (59%), Positives = 49/64 (76%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHR 60
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+IED  E   S  +  +++
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNLNDLVSEYQQYQDATIEDDDEYNESGSDIYNNQ 447

Query: 61  IKPE 64
           ++PE
Sbjct: 448 VEPE 451

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|440908756|gb|ELR58741.1| Tubulin beta-3 chain [Bos grunniens mutus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct: 736 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 793

Source: Bos grunniens mutus

Species: Bos grunniens

Genus: Bos

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|426243492|ref|XP_004023345.1| PREDICTED: LOW QUALITY PROTEIN: tubulin beta-3 chain [Ovis aries]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct: 734 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 791

Source: Ovis aries

Species: Ovis aries

Genus: Ovis

Family: Bovidae

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|30584215|gb|AAP36356.1| Homo sapiens tubulin, beta, 4 [synthetic construct] gi|60653943|gb|AAX29664.1| tubulin beta 4 [synthetic construct]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct: 735 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 792

Source: synthetic construct

Species: synthetic construct

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|30582781|gb|AAP35617.1| tubulin, beta, 4 [Homo sapiens] gi|61362358|gb|AAX42206.1| tubulin beta 4 [synthetic construct] gi|61362363|gb|AAX42207.1| tubulin beta 4 [synthetic construct] gi|119587079|gb|EAW66675.1| hCG2042771 [Homo sapiens]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct: 735 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 792

Source: Homo sapiens

Species: Homo sapiens

Genus: Homo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|397466576|ref|XP_003805028.1| PREDICTED: tubulin beta-3 chain [Pan paniscus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct: 734 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 791

Source: Pan paniscus

Species: Pan paniscus

Genus: Pan

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348550877|ref|XP_003461257.1| PREDICTED: tubulin beta-3 chain-like [Cavia porcellus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct: 811 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 868

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345307397|ref|XP_003428570.1| PREDICTED: tubulin beta-3 chain-like [Ornithorhynchus anatinus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct: 741 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 798

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
SGD|S000001857	457	TUB2 "Beta-tubulin" [Saccharom	0.771	0.118	0.655	2e-15
TAIR|locus:2198661	449	TUB5 "tubulin beta-5 chain" [A	0.842	0.131	0.593	4.2e-15
MGI|MGI:107813	450	Tubb3 "tubulin, beta 3 class I	0.828	0.128	0.620	5.4e-15
RGD|628595	450	Tubb3 "tubulin, beta 3 class I	0.828	0.128	0.620	5.4e-15
FB|FBgn0003890	522	betaTub97EF "beta-Tubulin at 9	0.785	0.105	0.672	5.8e-15
UNIPROTKB|P09652	449	P09652 "Tubulin beta-4 chain"	0.885	0.138	0.580	8.8e-15
UNIPROTKB|A8K854	378	TUBB3 "cDNA FLJ77784" [Homo sa	0.828	0.153	0.603	9.1e-15
WB|WBGene00006537	450	tbb-2 [Caenorhabditis elegans	0.814	0.126	0.655	1.1e-14
UNIPROTKB|Q2T9S0	450	TUBB3 "Tubulin beta-3 chain" [	0.828	0.128	0.603	1.5e-14
UNIPROTKB|F2Z4P1	450	F2Z4P1 "Uncharacterized protei	0.828	0.128	0.603	1.5e-14

SGD|S000001857 TUB2 "Beta-tubulin" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 201 (75.8 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 38/58 (65%), Positives = 45/58 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
             MF+RKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQEA++ED  E+    DE GD
Sbjct:   388 MFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEV----DENGD 441

GO:0003924 "GTPase activity" evidence=IEA

GO:0030473 "nuclear migration along microtubule" evidence=TAS

GO:0005874 "microtubule" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;TAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0046677 "response to antibiotic" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005881 "cytoplasmic microtubule" evidence=TAS

GO:0005816 "spindle pole body" evidence=IDA

GO:0005827 "polar microtubule" evidence=TAS

GO:0045143 "homologous chromosome segregation" evidence=TAS

GO:0005828 "kinetochore microtubule" evidence=TAS

GO:0005880 "nuclear microtubule" evidence=TAS

GO:0000070 "mitotic sister chromatid segregation" evidence=TAS

GO:0045298 "tubulin complex" evidence=TAS

GO:0000743 "nuclear migration involved in conjugation with cellular fusion" evidence=TAS

TAIR|locus:2198661 TUB5 "tubulin beta-5 chain" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDH 59
             MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ ++  E    ++E+GD+
Sbjct:   389 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQYQDATADEEGEYDVEEEEEGDY 447

GO:0003924 "GTPase activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005874 "microtubule" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA;ISS

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0045298 "tubulin complex" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

MGI|MGI:107813 Tubb3 "tubulin, beta 3 class III" [Mus musculus (taxid:10090)]

 Score = 197 (74.4 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
             MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   DDE+ +
Sbjct:   388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDDEESE 445

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=ISO

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0007067 "mitosis" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO;IMP

GO:0015630 "microtubule cytoskeleton" evidence=IDA

GO:0030182 "neuron differentiation" evidence=ISO

GO:0030424 "axon" evidence=IDA

GO:0042277 "peptide binding" evidence=ISO

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

RGD|628595 Tubb3 "tubulin, beta 3 class III" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
             MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   DDE+ +
Sbjct:   388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDDEESE 445

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=NAS

GO:0005525 "GTP binding" evidence=IEA

GO:0005622 "intracellular" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005874 "microtubule" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0007017 "microtubule-based process" evidence=IEA

GO:0007067 "mitosis" evidence=IMP

GO:0007411 "axon guidance" evidence=ISO;ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030424 "axon" evidence=IEA;ISO

GO:0042277 "peptide binding" evidence=IPI

GO:0051258 "protein polymerization" evidence=IEA

FB|FBgn0003890 betaTub97EF "beta-Tubulin at 97EF" [Drosophila melanogaster (taxid:7227)]

 Score = 198 (74.8 bits), Expect = 5.8e-15, P = 5.8e-15
 Identities = 39/58 (67%), Positives = 45/58 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
             MFRRKAFLHWYT EGMDE EF EA +N+ DLI EYQQYQEA+ +D VE    DDE+ +
Sbjct:   453 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATADDEVEF---DDEQAE 507

GO:0005874 "microtubule" evidence=IEA;ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA;ISS

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0051298 "centrosome duplication" evidence=IMP

UNIPROTKB|P09652 P09652 "Tubulin beta-4 chain" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 8.8e-15, P = 8.8e-15
 Identities = 36/62 (58%), Positives = 46/62 (74%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDHR 60
             MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +  
Sbjct:   388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESEQG 447

Query:    61 IK 62
              K
Sbjct:   448 AK 449

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|A8K854 TUBB3 "cDNA FLJ77784" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 9.1e-15, P = 9.1e-15
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
             MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct:   316 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 373

GO:0003924 "GTPase activity" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

WB|WBGene00006537 tbb-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 194 (73.4 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/58 (65%), Positives = 45/58 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
             MFRRKAFLHWYT EGMDE EF EA +N+ DLI EYQQYQEA+ ED V+   ++ E G+
Sbjct:   388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLISEYQQYQEATAEDDVD-GYAEGEAGE 444

GO:0005525 "GTP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

GO:0040039 "inductive cell migration" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0030728 "ovulation" evidence=IMP

GO:0007276 "gamete generation" evidence=IMP

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0035047 "centrosomal and pronuclear rotation" evidence=IMP

GO:0000212 "meiotic spindle organization" evidence=IGI

GO:0045298 "tubulin complex" evidence=ISS

GO:0005876 "spindle microtubule" evidence=IDA

UNIPROTKB|Q2T9S0 TUBB3 "Tubulin beta-3 chain" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
             MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct:   388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 445

GO:0007411 "axon guidance" evidence=ISS

GO:0030424 "axon" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|F2Z4P1 F2Z4P1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 193 (73.0 bits), Expect = 1.5e-14, P = 1.5e-14
 Identities = 35/58 (60%), Positives = 45/58 (77%)

Query:     1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
             MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ E+  E+   D+E+ +
Sbjct:   388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATAEEEGEMYEDDEEESE 445

GO:0030424 "axon" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0051258 "protein polymerization" evidence=IEA

GO:0007017 "microtubule-based process" evidence=IEA

GO:0005200 "structural constituent of cytoskeleton" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52275	TBB2_CAEEL	No assigned EC number	0.75	0.6857	0.1066	yes	N/A
Q8SS99	TBB_ENCCU	No assigned EC number	0.7291	0.6857	0.1093	yes	N/A
P02557	TBB_YEAST	No assigned EC number	0.6551	0.7714	0.1181	yes	N/A
Q76FS2	TBB8_ORYSJ	No assigned EC number	0.7380	0.6	0.0941	yes	N/A
Q4QRB4	TBB3_RAT	No assigned EC number	0.6206	0.8285	0.1288	yes	N/A
Q2T9S0	TBB3_BOVIN	No assigned EC number	0.6034	0.8285	0.1288	yes	N/A
P10874	TBB2_EMENI	No assigned EC number	0.7333	0.6428	0.1002	yes	N/A
Q4WA70	TBB_ASPFU	No assigned EC number	0.75	0.6857	0.1071	yes	N/A
P09652	TBB4_CHICK	No assigned EC number	0.5806	0.8857	0.1380	yes	N/A
Q9ERD7	TBB3_MOUSE	No assigned EC number	0.6206	0.8285	0.1288	yes	N/A
P05219	TBB_SCHPO	No assigned EC number	0.7674	0.6142	0.0959	yes	N/A
Q9GSR5	TBB_ENCIN	No assigned EC number	0.7083	0.6857	0.1093	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	70
PTZ00010	445	PTZ00010, PTZ00010, tubulin beta chain; Provisiona	2e-23
PLN00220	447	PLN00220, PLN00220, tubulin beta chain; Provisiona	1e-22
cd02187	425	cd02187, beta_tubulin, The tubulin superfamily inc	2e-21
COG5023	443	COG5023, COG5023, Tubulin [Cytoskeleton]	1e-17
cd06059	382	cd06059, Tubulin, The tubulin superfamily includes	7e-15
cd02186	434	cd02186, alpha_tubulin, The tubulin superfamily in	3e-09
PTZ00335	448	PTZ00335, PTZ00335, tubulin alpha chain; Provision	5e-09
cd02189	446	cd02189, delta_tubulin, The tubulin superfamily in	2e-07
PLN00221	450	PLN00221, PLN00221, tubulin alpha chain; Provision	2e-06
cd02190	379	cd02190, epsilon_tubulin, The tubulin superfamily	5e-06
PTZ00387	465	PTZ00387, PTZ00387, epsilon tubulin; Provisional	0.001
cd02188	431	cd02188, gamma_tubulin, Gamma-tubulin is a ubiquit	0.002

>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional

 Score = 91.0 bits (226), Expect = 2e-23
 Identities = 33/55 (60%), Positives = 42/55 (76%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDE 55
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A++E+  E    ++ 
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEA 442

Length = 445

>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional

 Score = 88.3 bits (219), Expect = 1e-22
 Identities = 33/59 (55%), Positives = 43/59 (72%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGDH 59
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ ++  E    ++E+   
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYE 446

Length = 447

>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 84.6 bits (210), Expect = 2e-21
 Identities = 30/39 (76%), Positives = 33/39 (84%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQ 39
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ
Sbjct: 387 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ 425

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 425

>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton]

 Score = 74.3 bits (183), Expect = 1e-17
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVE 48
           MF+++AFLHWY  EGM+E EF EA  +V DL  EY+  ++ S  D  E
Sbjct: 391 MFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEE 438

Length = 443

>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 66.5 bits (163), Expect = 7e-15
 Identities = 23/37 (62%), Positives = 30/37 (81%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQ 37
           +++RKAFLHWY  EGMDE EF EA +++EDLI  YQ+
Sbjct: 346 LYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE 382

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Also included in this group is the mitochondrial Misato/DML1 protein family, involved in mitochondrial fusion and in mitochondrial distribution and morphology. Length = 382

>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 50.4 bits (121), Expect = 3e-09
 Identities = 19/41 (46%), Positives = 26/41 (63%), Gaps = 3/41 (7%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEA 41
           M+ ++AF+HWY  EGM+E EF EA    EDL    + Y+E 
Sbjct: 397 MYSKRAFVHWYVGEGMEEGEFSEA---REDLAALEKDYEEV 434

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Length = 434

>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           M+ ++AF+HWY  EGM+E EF EA    EDL    + Y+E       E A  + E+  
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGA----ESADEEGEEDV 448

Length = 448

>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 45.4 bits (108), Expect = 2e-07
 Identities = 14/36 (38%), Positives = 22/36 (61%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQ 36
           MF   A+LH Y   G++E +F +A A +E +I  Y+
Sbjct: 410 MFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK 445

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies. Length = 446

>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDE 55
           M+ ++AF+HWY  EGM+E EF EA    EDL    + Y+E   E         +E
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAR---EDLAALEKDYEEVGAESAEGEGDEGEE 449

Length = 450

>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 16/37 (43%), Positives = 25/37 (67%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQ 37
           +++RKA LH YT  GM++ +F EA  ++ +LI EY  
Sbjct: 342 LYKRKAHLHHYTQVGMEQGDFTEALESISNLIDEYDY 378

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis. Length = 379

>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 13/41 (31%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEA 41
           +++RK+ +H YT E +++  F E    +++LI +Y   Q A
Sbjct: 413 LYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA 452

Length = 465

>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)

Query: 1   MFRRKAFLHWYTVEGMDEF---EFHEAGANVEDLICEY 35
           + +R+AFL  Y  E M      EF E+   V+ LI EY
Sbjct: 394 LRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping. Length = 431

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
COG5023	443	Tubulin [Cytoskeleton]	99.45
PTZ00010	445	tubulin beta chain; Provisional	99.42
PLN00220	447	tubulin beta chain; Provisional	99.4
PLN00221	450	tubulin alpha chain; Provisional	99.36
PTZ00335	448	tubulin alpha chain; Provisional	99.35
KOG1375|consensus	369		99.34
cd02186	434	alpha_tubulin The tubulin superfamily includes fiv	99.29
cd02190	379	epsilon_tubulin The tubulin superfamily includes f	99.28
cd02187	425	beta_tubulin The tubulin superfamily includes five	99.28
cd06059	382	Tubulin The tubulin superfamily includes five dist	99.2
PTZ00387	465	epsilon tubulin; Provisional	99.18
PLN00222	454	tubulin gamma chain; Provisional	99.17
cd02189	446	delta_tubulin The tubulin superfamily includes fiv	99.17
cd02188	431	gamma_tubulin Gamma-tubulin is a ubiquitous phylog	99.14
KOG1376|consensus	407		98.53
KOG1374|consensus	448		98.42

>COG5023 Tubulin [Cytoskeleton]

Probab=99.45  E-value=1.8e-14  Score=108.10  Aligned_cols=46  Identities=50%  Similarity=0.828  Sum_probs=42.6

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhccccc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDT   46 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~~~~~   46 (70)
                      ||+||||||||+++||++++|+||+++|++|+.+|+++++++.+++
T Consensus       391 mf~krAFlhwY~~egmee~EFsEare~~~~L~~eY~~~~~~s~~~~  436 (443)
T COG5023         391 MFKKRAFLHWYVGEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDD  436 (443)
T ss_pred             HHHhhHHHHHHhhccCcccchhhHHHHHHHHHHHHHHhccccccch
Confidence            6899999999999999999999999999999999999998875543

>PTZ00010 tubulin beta chain; Provisional

Probab=99.42  E-value=7.9e-14  Score=104.82  Aligned_cols=44  Identities=73%  Similarity=1.243  Sum_probs=40.7

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhccc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIE   44 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~~~   44 (70)
                      ||+||||||||+++||++++|.||+++|++|+++|+.+.....+
T Consensus       388 m~~rrAflh~Y~~eGmee~ef~EA~~~l~~li~~Y~~~~~~~~~  431 (445)
T PTZ00010        388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATVE  431 (445)
T ss_pred             HHhcCchhhhhhccCCcHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence            78999999999999999999999999999999999998776533

>PLN00220 tubulin beta chain; Provisional

Probab=99.40  E-value=1.4e-13  Score=103.41  Aligned_cols=42  Identities=74%  Similarity=1.249  Sum_probs=39.5

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS   42 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~   42 (70)
                      ||+||||||||+++||++++|.||+++|++|+++|++++...
T Consensus       388 m~~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~~~~~~  429 (447)
T PLN00220        388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT  429 (447)
T ss_pred             HHhcCcchhhhcccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            789999999999999999999999999999999999987654

>PLN00221 tubulin alpha chain; Provisional

Probab=99.36  E-value=3.1e-13  Score=101.92  Aligned_cols=42  Identities=40%  Similarity=0.772  Sum_probs=39.8

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS   42 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~   42 (70)
                      ||+||||||||+++||++++|.||+++|++||++|+++++..
T Consensus       398 mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~  439 (450)
T PLN00221        398 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES  439 (450)
T ss_pred             HHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999999987654

>PTZ00335 tubulin alpha chain; Provisional

Probab=99.35  E-value=3.6e-13  Score=101.51  Aligned_cols=42  Identities=40%  Similarity=0.772  Sum_probs=39.3

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS   42 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~   42 (70)
                      ||+||||||||+++||++++|.||+++|++||++|+++++..
T Consensus       398 mf~rkAflh~Y~~eGmee~eF~EA~~~l~~li~~Y~~~~~~~  439 (448)
T PTZ00335        398 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAES  439 (448)
T ss_pred             HHhhcchhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccc
Confidence            789999999999999999999999999999999999986543

>KOG1375|consensus

Probab=99.34  E-value=3.7e-13  Score=100.01  Aligned_cols=44  Identities=73%  Similarity=1.214  Sum_probs=40.0

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHH-HHhccc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY-QEASIE   44 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~-~~~~~~   44 (70)
                      ||+||||||||+++||++++|+||..++++||.+|+++ +.+..+
T Consensus       312 mfrrkAflhwy~~egMde~EFtEAes~~ndLi~eyqQy~~~~~~~  356 (369)
T KOG1375|consen  312 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQQDATAE  356 (369)
T ss_pred             HHHhhhhhhhcccccchhhhhhHHHHHHHHHHHHHHHhhhhcccc
Confidence            68999999999999999999999999999999999999 554433

>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.29  E-value=9.1e-13  Score=98.78  Aligned_cols=37  Identities=43%  Similarity=0.879  Sum_probs=35.9

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQ   37 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~   37 (70)
                      ||+||||||||+++||++++|.||+++|++|+++|++
T Consensus       397 mf~rkAflh~Y~~~Gmee~ef~ea~~~l~~li~~Y~~  433 (434)
T cd02186         397 MYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE  433 (434)
T ss_pred             HHhhcchhhhhcCcCCchHHHHHHHHHHHHHHHHHhh
Confidence            7899999999999999999999999999999999986

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino

>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.28  E-value=1.2e-12  Score=96.80  Aligned_cols=38  Identities=42%  Similarity=0.700  Sum_probs=36.2

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY   38 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~   38 (70)
                      ||+||||||||+++||++++|++|+++|++||++|+++
T Consensus       342 mf~krAflh~Y~~eG~ee~ef~ea~~~l~~li~~Y~~l  379 (379)
T cd02190         342 LYKRKAHLHHYTQVGMEQGDFTEALESISNLIDEYDYL  379 (379)
T ss_pred             HHhcccchhhhhCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence            78999999999999999999999999999999999863

The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.

>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.28  E-value=1.4e-12  Score=97.45  Aligned_cols=38  Identities=76%  Similarity=1.299  Sum_probs=36.7

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY   38 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~   38 (70)
                      ||+||||||||+++||++++|.||+++|++||++|+++
T Consensus       387 m~~kkAflh~Y~~~G~ee~ef~Ea~~~l~~li~~Y~~~  424 (425)
T cd02187         387 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY  424 (425)
T ss_pred             HHhcCcchhhhhccCCchHHHHHHHHHHHHHHHHHHhh
Confidence            78999999999999999999999999999999999975

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-

>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.20  E-value=4.6e-12  Score=93.04  Aligned_cols=37  Identities=62%  Similarity=1.128  Sum_probs=35.4

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQ   37 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~   37 (70)
                      ||+||||||||+++||++++|.||+++|++|+++|++
T Consensus       346 m~~~rAflh~Y~~~G~ee~ef~ea~~~l~~li~~Y~~  382 (382)
T cd06059         346 LYKRKAFLHWYLGEGMDEMEFTEAESSLEDLIQSYQE  382 (382)
T ss_pred             HHhhCcchhhhcCcCCchHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999999999999999999973

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi

>PTZ00387 epsilon tubulin; Provisional

Probab=99.18  E-value=8.7e-12  Score=94.61  Aligned_cols=40  Identities=33%  Similarity=0.598  Sum_probs=37.8

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHh
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEA   41 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~   41 (70)
                      ||+||||||||+ +||++++|++|+++|++|+++|++++.+
T Consensus       413 mf~rkAflH~Y~-egmee~eF~ea~~~l~~li~~Y~~~~~~  452 (465)
T PTZ00387        413 LYKRKSHVHHYT-EYLEQAYFDETLETIQNLIDDYAYLQTA  452 (465)
T ss_pred             HHhhcchHHhhh-cccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            789999999999 8999999999999999999999999744

>PLN00222 tubulin gamma chain; Provisional

Probab=99.17  E-value=1.3e-11  Score=93.23  Aligned_cols=41  Identities=32%  Similarity=0.399  Sum_probs=37.8

Q ss_pred             CccccccccccccCCCC----cccHHHHHHhHHHHHHHHHHHHHh
Q psy593            1 MFRRKAFLHWYTVEGMD----EFEFHEAGANVEDLICEYQQYQEA   41 (70)
Q Consensus         1 LykrkAfLh~Y~~egme----~~eF~ea~e~l~~li~eY~~~~~~   41 (70)
                      ||+||||||||+++||+    +++|.+|+++|++|+++|+.++.+
T Consensus       400 mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~  444 (454)
T PLN00222        400 LRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESP  444 (454)
T ss_pred             HHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcc
Confidence            79999999999999993    799999999999999999998743

>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa

Probab=99.17  E-value=9.8e-12  Score=93.50  Aligned_cols=36  Identities=39%  Similarity=0.676  Sum_probs=35.0

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQ   36 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~   36 (70)
                      ||+||||||||.++||++++|.||+++|++||++|+
T Consensus       410 mf~~rAflH~Y~~~Gmee~ef~eA~~~l~~li~~Y~  445 (446)
T cd02189         410 MFASGAYLHQYEKYGLEEEDFLDAFATLEQIIASYK  445 (446)
T ss_pred             HHhcCcchhhhhccCCcHHHHHHHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999996

The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.

>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily

Probab=99.14  E-value=1.4e-11  Score=92.63  Aligned_cols=35  Identities=43%  Similarity=0.539  Sum_probs=34.0

Q ss_pred             CccccccccccccCCCC---cccHHHHHHhHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMD---EFEFHEAGANVEDLICEY   35 (70)
Q Consensus         1 LykrkAfLh~Y~~egme---~~eF~ea~e~l~~li~eY   35 (70)
                      ||+||||||||+++||+   +++|.||+++|++|+++|
T Consensus       394 mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y  431 (431)
T cd02188         394 LRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY  431 (431)
T ss_pred             HHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence            78999999999999999   999999999999999988

Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.

>KOG1376|consensus

Probab=98.53  E-value=2.9e-08  Score=74.63  Aligned_cols=32  Identities=47%  Similarity=0.896  Sum_probs=30.0

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLI   32 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li   32 (70)
                      ||.||||+|||.++||++.+|.+|++.|..|.
T Consensus       375 myakrafVhwyvgegmeegef~ea~ed~a~le  406 (407)
T KOG1376|consen  375 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALE  406 (407)
T ss_pred             hhcchheeeeccCCCccccchhhhhhhHHhhc
Confidence            79999999999999999999999999998763

>KOG1374|consensus

Probab=98.42  E-value=7.2e-08  Score=73.01  Aligned_cols=40  Identities=30%  Similarity=0.446  Sum_probs=37.4

Q ss_pred             CccccccccccccCCCCcc---cHHHHHHhHHHHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEF---EFHEAGANVEDLICEYQQYQE   40 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~---eF~ea~e~l~~li~eY~~~~~   40 (70)
                      |++|+||||.|++++++++   +|+++++.|++|+++|.++++
T Consensus       399 lrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~  441 (448)
T KOG1374|consen  399 LRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQ  441 (448)
T ss_pred             HHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcC
Confidence            5799999999999999887   999999999999999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	70
4ffb_B	463	A Tog:alphaBETA-Tubulin Complex Structure Reveals C		2e-16
1z2b_B	445	Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai		6e-14
3ryc_B	445	Tubulin: Rb3 Stathmin-Like Domain Complex Length =		6e-14
3du7_B	445	Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domai		6e-14
4drx_B	431	Gtp-Tubulin In Complex With A Darpin Length = 431		1e-13
4f61_B	445	Tubulin:stathmin-Like Domain Complex Length = 445		1e-13
4i4t_B	445	Crystal Structure Of Tubulin-rb3-ttl-zampanolide Co		1e-13
1ffx_B	445	Tubulin:stathmin-Like Domain Complex Length = 445		1e-13
2xrp_A	445	Human Doublecortin N-Dc Repeat (1mjd) And Mammalian		1e-13
1tub_B	427	Tubulin Alpha-Beta Dimer, Electron Diffraction Leng		5e-13
2bto_A	473	Structure Of Btuba From Prosthecobacter Dejongeii L		6e-04
1z2b_A	448	Tubulin-Colchicine-Vinblastine: Stathmin-Like Domai		6e-04

>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals Conformation-Based Mechanisms For A Microtubule Polymerase Length = 463

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 45/58 (77%), Gaps = 4/58 (6%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           MF+RKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQEA++ED  E+    DE GD
Sbjct: 388 MFKRKAFLHWYTSEGMDELEFSEAESNMNDLVSEYQQYQEATVEDDEEV----DENGD 441

>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin Length = 431

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex Length = 445

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex Length = 445

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian Tubulin (1jff And 3hke) Docked Into The 8-Angstrom Cryo-Em Map Of Doublecortin-Stabilised Microtubules Length = 445

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/42 (73%), Positives = 36/42 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS 42
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDAT 429

>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction Length = 427

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/40 (75%), Positives = 34/40 (85%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE 40
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 427

>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii Length = 473

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSD 53
           +++RKAF +WY  EGM E + +   A+ ++L+  YQ  +E+  +  V+ +  D
Sbjct: 393 LWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEESGAKAKVQDSAGD 445

>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain Complex Length = 448

Iteration: 1
 Score = 38.9 bits (89), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 3/44 (6%)
Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIE 44
           M+ ++AF+HWY  EGM+E EF EA    ED+    + Y+E  I+
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAR---EDMAALEKDYEEVGID 438

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	70
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	6e-22
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	3e-19
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	9e-19
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	2e-18
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	8e-17

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B* 1sa0_B* 1sa1_B* ... Length = 445

 Score = 85.9 bits (213), Expect = 6e-22
 Identities = 33/55 (60%), Positives = 41/55 (74%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDE 55
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+A+ ++  E    + E
Sbjct: 388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEEGE 442

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A* Length = 473

 Score = 78.3 bits (193), Expect = 3e-19
 Identities = 17/55 (30%), Positives = 32/55 (58%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDE 55
           +++RKAF +WY  EGM E + +   A+ ++L+  YQ  +E+  +  V+ +  D  
Sbjct: 393 LWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEESGAKAKVQDSAGDTG 447

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A* Length = 475

 Score = 77.0 bits (190), Expect = 9e-19
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIEDTVEIATSDDEKGD 58
           + +R+AFL  +  E M +  F E   + E +     +Y  A+  D +   T +    D
Sbjct: 398 LRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVD 455

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A* 2wbe_A* 3dco_A* ... Length = 451

 Score = 76.0 bits (187), Expect = 2e-18
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIED 45
           M+ ++AF+HWY  EGM+E EF EA  ++  L  +Y++    S+E 
Sbjct: 398 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEG 442

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii} Length = 426

 Score = 71.3 bits (175), Expect = 8e-17
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQ 37
           MF   A+ HWY   G+      +A   +  L   Y+ 
Sbjct: 388 MFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYRD 424

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
3ryc_B	445	Tubulin beta chain; alpha-tubulin, beta-tubulin, G	99.59
3ryc_A	451	Tubulin alpha chain; alpha-tubulin, beta-tubulin,	99.52
2bto_A	473	Tubulin btuba; bacterial tubulin, polymerization,	99.4
2btq_B	426	Tubulin btubb; structural protein, cytoskeletal pr	99.39
3cb2_A	475	Gamma-1-tubulin, tubulin gamma-1 chain; lattice, m	99.31
2e4h_B	36	Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-	97.53

>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...

Probab=99.59  E-value=2.8e-16  Score=117.55  Aligned_cols=45  Identities=69%  Similarity=1.200  Sum_probs=42.4

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhcccc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASIED   45 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~~~~   45 (70)
                      ||+||||||||+++||++++|.||+++|.+|+.+|++++.++.++
T Consensus       388 m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~~~  432 (445)
T 3ryc_B          388 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQDATADE  432 (445)
T ss_dssp             HHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred             hhhcccchhhhhccCCcHHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence            689999999999999999999999999999999999999887654

>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...

Probab=99.52  E-value=1.9e-15  Score=113.19  Aligned_cols=43  Identities=40%  Similarity=0.760  Sum_probs=39.5

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhcc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI   43 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~~   43 (70)
                      ||+||||||||+++||++++|.||+++|.+|+++|++++.++.
T Consensus       398 m~~krAFvHwY~~eGmee~eF~EA~e~l~~L~~eY~~~~~~~~  440 (451)
T 3ryc_A          398 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV  440 (451)
T ss_dssp             HHTTTTTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCC--
T ss_pred             HhhcceeHhhhcCCccchhhHHHHHHHHHHHHHHHHHHhcCCC
Confidence            6899999999999999999999999999999999999987653

>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*

Probab=99.40  E-value=4.4e-14  Score=105.92  Aligned_cols=42  Identities=36%  Similarity=0.671  Sum_probs=38.5

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHHhc
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEAS   42 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~~~   42 (70)
                      ||+||||||||+++||++++|.||+++|.+|+++|++++...
T Consensus       393 m~~rrAflH~Y~~eGmee~eF~EA~e~l~~l~~eY~~~~~~~  434 (473)
T 2bto_A          393 LWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEESG  434 (473)
T ss_dssp             HHTTTTTHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HhhhcchhHHhhccCCcHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            689999999999999999999999999999999999987654

>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}

Probab=99.39  E-value=6e-14  Score=103.85  Aligned_cols=38  Identities=26%  Similarity=0.547  Sum_probs=36.7

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQY   38 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~   38 (70)
                      ||+||||||||+++||++++|.||+++|.+|+++|+++
T Consensus       388 m~~rrAflh~Y~~eGmee~eF~ea~~~l~~l~~eY~~~  425 (426)
T 2btq_B          388 MFDNHAYTHWYENAGVSRDMMAKARNQIATLAQSYRDA  425 (426)
T ss_dssp             HHHTTSSHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhhccCCccHHHHHHHHHHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999986

>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*

Probab=99.31  E-value=2.3e-13  Score=102.21  Aligned_cols=42  Identities=29%  Similarity=0.380  Sum_probs=38.5

Q ss_pred             CccccccccccccCCCCc---ccHHHHHHhHHHHHHHHHHHHHhc
Q psy593            1 MFRRKAFLHWYTVEGMDE---FEFHEAGANVEDLICEYQQYQEAS   42 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~---~eF~ea~e~l~~li~eY~~~~~~~   42 (70)
                      ||+||||||||+++||++   ++|.||+++|.+|+++|++++...
T Consensus       398 m~~rrAflHwY~~eGm~e~~~~eF~EA~~~l~~li~eY~~~~~~~  442 (475)
T 3cb2_A          398 LRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPD  442 (475)
T ss_dssp             HHHTTCSCHHHHTSGGGSSCCHHHHHHHHHHHHHHHHHHHTTSGG
T ss_pred             HhhcccceeeecccCccccchhHHHHHHHHHHHHHHHHHHHhhcc
Confidence            689999999999999986   999999999999999999986543

>2e4h_B Tubulin alpha-ubiquitous chain; cytoskeleton, CAP-Gly, complex structure, solution structure, CLIP, structural protein; NMR {Homo sapiens}

Probab=97.53  E-value=6.3e-05  Score=38.70  Aligned_cols=24  Identities=29%  Similarity=0.335  Sum_probs=21.3

Q ss_pred             ccHHHHHHhHHHHHHHHHHHHHhc
Q psy593           19 FEFHEAGANVEDLICEYQQYQEAS   42 (70)
Q Consensus        19 ~eF~ea~e~l~~li~eY~~~~~~~   42 (70)
                      ++|.+|+++|.+|+.+|+++..++
T Consensus         1 ~EFsEA~edl~~L~~dYee~~~~~   24 (36)
T 2e4h_B            1 GEFSEAREDMAALEKDYEEVGVDS   24 (36)
T ss_pred             CcchHHHHHHHHHHHHHHHHhccc
Confidence            479999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	70
d1tubb2	184	d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Su	1e-20
d2btoa2	180	d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosth	9e-19
d1tuba2	195	d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (S	1e-17

>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 184

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 78.1 bits (192), Expect = 1e-20
 Identities = 30/40 (75%), Positives = 34/40 (85%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE 40
           MFRRKAFLHWYT EGMDE EF EA +N+ DL+ EYQQYQ+
Sbjct: 145 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQD 184

>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]} Length = 180

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

 Score = 73.1 bits (179), Expect = 9e-19
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE 40
           +++RKAF +WY  EGM E + +   A+ ++L+  YQ  +E
Sbjct: 141 LWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAEE 180

>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]} Length = 195

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 70.4 bits (172), Expect = 1e-17
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 1   MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQEASI 43
           M+ ++AF+HWY  EGM+E EF EA  ++  L  +Y++    S+
Sbjct: 153 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 195

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1tuba2	195	Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 98	99.59
d2btoa2	180	Tubulin alpha-subunit {Prosthecobacter dejongeii [	99.58
d1tubb2	184	Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 982	99.56

>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.59  E-value=1.4e-16  Score=105.43  Aligned_cols=40  Identities=40%  Similarity=0.775  Sum_probs=38.1

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQE   40 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~~   40 (70)
                      ||+||||||||+++||++++|.||+++|.+||++|+++..
T Consensus       153 l~~rkAflh~Y~~egmee~eF~EA~e~l~~li~eY~~~~~  192 (195)
T d1tuba2         153 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGV  192 (195)
T ss_dssp             HTTTTCCTTTGGGGSCCSSSSHHHHHHHHHHHHHHHHTTS
T ss_pred             HHhhchHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            6899999999999999999999999999999999999754

>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter dejongeii [TaxId: 48465]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin alpha-subunit
species: Prosthecobacter dejongeii [TaxId: 48465]

Probab=99.58  E-value=1.4e-16  Score=104.25  Aligned_cols=39  Identities=36%  Similarity=0.679  Sum_probs=37.6

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQ   39 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~   39 (70)
                      ||+||||||||+++||++++|.||+++|++||++|++++
T Consensus       141 m~~rkAflh~Y~~egmee~eF~ea~~~~~~li~eY~~~e  179 (180)
T d2btoa2         141 LWQRKAFANWYLNEGMSEEQINVLRASAQELVQSYQVAE  179 (180)
T ss_dssp             HHTTTTTHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhcChhHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            689999999999999999999999999999999999985

>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: Tubulin C-terminal domain-like
family: Tubulin, C-terminal domain
domain: Tubulin beta-subunit
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=2.5e-16  Score=103.46  Aligned_cols=39  Identities=77%  Similarity=1.289  Sum_probs=37.5

Q ss_pred             CccccccccccccCCCCcccHHHHHHhHHHHHHHHHHHH
Q psy593            1 MFRRKAFLHWYTVEGMDEFEFHEAGANVEDLICEYQQYQ   39 (70)
Q Consensus         1 LykrkAfLh~Y~~egme~~eF~ea~e~l~~li~eY~~~~   39 (70)
                      ||+||||||||+++||++++|.||+++|.+||++|++++
T Consensus       145 l~~kkAflh~Y~~egmee~eF~ea~e~i~~li~eY~~~e  183 (184)
T d1tubb2         145 MFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQ  183 (184)
T ss_dssp             TCCCCCCCHHHHTSSCCSTTTHHHHHHHHHHHHHHHTTT
T ss_pred             HHhcChhHHhhccCCCcHHhHHHHHHHHHHHHHHHHHhh
Confidence            799999999999999999999999999999999999874