Psyllid ID: psy594

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDELAGFRSEATEFS
Secondary Structure (PSIPRED)
cEEEEEEHHHHHHHHHHHHccccHHcHHHHHHHHccccEEEEEEEEHHHHHHHHHHccccccccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccEEccccccccccccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccccEEEEEEEc
Secondary Structure Prediction (SSPRO)
cEEEccHHHHHHHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHHHHHcccccccEEEEEccHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHEEcc
Coil and Loop (DISEMBL)
MLFVGGIPLFYMELALGQFhrkgaitcwgrivplfkgKMTRLARMasltwppalfidgkyfnGLLSGVLVLTQHLNGNRYILEMQhstglhdlgyIKWDMALCLLAVYLICYFSMWkgistsgkgikyylqpnfdaitksevsgdtsgpglVFIVYPAAIATMPGSIFWSLIFFMMLLTLgldssfggSEAIITALSdglamprdelagfrseatefs
Flexible Loop (DISEMBL)
MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITAlsdglamprdELAGFRSEATEFS
Low Complexity Region (SEG)
MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDELAGFRSEATEFS
Disordered region (IsUnstruct)
*LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGL******************
Disordered Region (DISOPRED)
MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDELAGFRSEATEFS
Disordered Region (DISEMBL)
MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDELAG*********
Disordered Region (DISPRO)
MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDELAGFRSEATEFS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDELAGFRSEATEFS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	218	2.2.26 [Sep-21-2011]
Q60857	630	Sodium-dependent serotoni	yes	N/A	0.655	0.226	0.300	3e-20
P31652	630	Sodium-dependent serotoni	yes	N/A	0.655	0.226	0.296	7e-20
Q9MYX0	630	Sodium-dependent serotoni	no	N/A	0.655	0.226	0.296	2e-19
P31645	630	Sodium-dependent serotoni	yes	N/A	0.655	0.226	0.296	2e-19
Q9XT49	630	Sodium-dependent serotoni	yes	N/A	0.655	0.226	0.287	3e-19
O35899	630	Sodium-dependent serotoni	yes	N/A	0.655	0.226	0.278	1e-18
P51905	622	Sodium-dependent serotoni	no	N/A	0.288	0.101	0.686	1e-16
P23975	617	Sodium-dependent noradren	no	N/A	0.536	0.189	0.343	1e-16
Q03614	615	Sodium-dependent dopamine	no	N/A	0.077	0.027	0.75	8e-16
O55192	617	Sodium-dependent noradren	no	N/A	0.545	0.192	0.327	1e-15

>sp|Q60857|SC6A4_MOUSE Sodium-dependent serotonin transporter OS=Mus musculus GN=Slc6a4 PE=1 SV=4

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 97/226 (42%), Gaps = 83/226 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           M   GGIPLFYMELALGQ+HR G I+ W +I P+FKG    +  +A        F    Y
Sbjct: 124 MAIFGGIPLFYMELALGQYHRNGCISIWKKICPIFKGIGYAICIIA--------FYIASY 175

Query: 61  FNGLLSGVLV-----LTQHL----------NGN-------------------------RY 80
           +N +++  L       T  L           GN                         R+
Sbjct: 176 YNTIIAWALYYLISSFTDQLPWTSCKNSWNTGNCTNYFAQDNITWTLHSTSPAEEFYLRH 235

Query: 81  ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK---------------- 124
           +L++  S GL DLG I W +ALC++ ++ I YFS+WKG+ TSGK                
Sbjct: 236 VLQIHQSKGLQDLGTISWQLALCIMLIFTIIYFSIWKGVKTSGKVVWVTATFPYIVLSVL 295

Query: 125 ------------GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                       G+ +YL+PN+  + ++ V  D +       GPG 
Sbjct: 296 LVRGATLPGAWRGVVFYLKPNWQKLLETGVWVDAAAQIFFSLGPGF 341

Serotonin transporter whose primary function in the central nervous system involves the regulation of serotonergic signaling via transport of serotonin molecules from the synaptic cleft back into the pre-synaptic terminal for re-utilization. Plays a key role in mediating regulation of the availability of serotonin to other receptors of serotonergic systems. Terminates the action of serotonin and recycles it in a sodium-dependent manner.
Mus musculus (taxid: 10090)

>sp|P31652|SC6A4_RAT Sodium-dependent serotonin transporter OS=Rattus norvegicus GN=Slc6a4 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 83/226 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           M   GGIPLFYMELALGQ+HR G I+ W +I P+FKG    +  +A        F    Y
Sbjct: 124 MAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIA--------FYIASY 175

Query: 61  FNGLLSGVLV-----LTQHL----------NGN-------------------------RY 80
           +N +++  L      LT  L           GN                         R+
Sbjct: 176 YNTIIAWALYYLISSLTDRLPWTSCTNSWNTGNCTNYFAQDNITWTLHSTSPAEEFYLRH 235

Query: 81  ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK---------------- 124
           +L++  S GL DLG I W + LC++ ++ + YFS+WKG+ TSGK                
Sbjct: 236 VLQIHQSKGLQDLGTISWQLTLCIVLIFTVIYFSIWKGVKTSGKVVWVTATFPYIVLSVL 295

Query: 125 ------------GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                       G+ +YL+PN+  + ++ V  D +       GPG 
Sbjct: 296 LVRGATLPGAWRGVVFYLKPNWQKLLETGVWVDAAAQIFFSLGPGF 341

Serotonin transporter whose primary function in the central nervous system involves the regulation of serotonergic signaling via transport of serotonin molecules from the synaptic cleft back into the pre-synaptic terminal for re-utilization. Plays a key role in mediating regulation of the availability of serotonin to other receptors of serotonergic systems. Terminates the action of serotonin and recycles it in a sodium-dependent manner.

Rattus norvegicus (taxid: 10116)

>sp|Q9MYX0|SC6A4_MACMU Sodium-dependent serotonin transporter OS=Macaca mulatta GN=SLC6A4 PE=2 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 83/226 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           M   GGIPLFYMELALGQ+HR G I+ W +I P+FKG    +  +A        F    Y
Sbjct: 124 MAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIA--------FYIASY 175

Query: 61  FNGLLSGVLV-----LTQHL----------NGN-------------------------RY 80
           +N +++  L       T  L           GN                         R+
Sbjct: 176 YNTIMAWALYYLISSFTDQLPWTSCKNSWNTGNCTNYFSEDNITWTLHSTSPAEEFYTRH 235

Query: 81  ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK---------------- 124
           +L++  S GL DLG I W +ALC++ ++ + YFS+WKG+ TSGK                
Sbjct: 236 VLQIHRSKGLQDLGGISWQLALCIMLIFTVIYFSIWKGVKTSGKVVWVTATFPYIILSVL 295

Query: 125 ------------GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                       G+ +YL+PN+  + ++ V  D +       GPG 
Sbjct: 296 LVRGATLPGAWRGVLFYLKPNWQKLLETGVWIDAAAQIFFSLGPGF 341

Serotonin transporter whose primary function in the central nervous system involves the regulation of serotonergic signaling via transport of serotonin molecules from the synaptic cleft back into the pre-synaptic terminal for re-utilization. Plays a key role in mediating regulation of the availability of serotonin to other receptors of serotonergic systems. Terminates the action of serotonin and recycles it in a sodium-dependent manner.

Macaca mulatta (taxid: 9544)

>sp|P31645|SC6A4_HUMAN Sodium-dependent serotonin transporter OS=Homo sapiens GN=SLC6A4 PE=1 SV=1

 Score = 95.5 bits (236), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/226 (29%), Positives = 97/226 (42%), Gaps = 83/226 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           M   GGIPLFYMELALGQ+HR G I+ W +I P+FKG    +  +A        F    Y
Sbjct: 124 MAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIA--------FYIASY 175

Query: 61  FNGLLSGVLV-----LTQHL----------NGN-------------------------RY 80
           +N +++  L       T  L           GN                         R+
Sbjct: 176 YNTIMAWALYYLISSFTDQLPWTSCKNSWNTGNCTNYFSEDNITWTLHSTSPAEEFYTRH 235

Query: 81  ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK---------------- 124
           +L++  S GL DLG I W +ALC++ ++ + YFS+WKG+ TSGK                
Sbjct: 236 VLQIHRSKGLQDLGGISWQLALCIMLIFTVIYFSIWKGVKTSGKVVWVTATFPYIILSVL 295

Query: 125 ------------GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                       G+ +YL+PN+  + ++ V  D +       GPG 
Sbjct: 296 LVRGATLPGAWRGVLFYLKPNWQKLLETGVWIDAAAQIFFSLGPGF 341

Serotonin transporter whose primary function in the central nervous system involves the regulation of serotonergic signaling via transport of serotonin molecules from the synaptic cleft back into the pre-synaptic terminal for re-utilization. Plays a key role in mediating regulation of the availability of serotonin to other receptors of serotonergic systems. Terminates the action of serotonin and recycles it in a sodium-dependent manner.

Homo sapiens (taxid: 9606)

>sp|Q9XT49|SC6A4_BOVIN Sodium-dependent serotonin transporter OS=Bos taurus GN=SLC6A4 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 97/226 (42%), Gaps = 83/226 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           M   GGIPLFYMELALGQ+HR G I+ W +I P+FKG    +  +A        F    Y
Sbjct: 124 MAIFGGIPLFYMELALGQYHRNGCISIWTKICPIFKGIGCAICLIA--------FYIASY 175

Query: 61  FNGLLSGVLV-----LTQHL----------NGN-------------------------RY 80
           +N +++  L       T+ L           GN                         R+
Sbjct: 176 YNTIIAWALYYLISSFTEQLPWTSCENSWNTGNCTNYFSEDNITWTLHSTSPAEEFYTRH 235

Query: 81  ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK---------------- 124
           +L++  S GL DLG + W + LC++ ++ + YFS+WKG+ TSGK                
Sbjct: 236 VLQIHRSKGLQDLGGLSWQLVLCIMFIFTVIYFSIWKGVKTSGKVVWVTATFPYIILLIL 295

Query: 125 ------------GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                       G+ +YL+PN+  + ++ V  D +       GPG 
Sbjct: 296 LVRGATLPGAWRGVLFYLKPNWQKLLETGVWVDAAAQIFFSLGPGF 341

Serotonin transporter whose primary function in the central nervous system involves the regulation of serotonergic signaling via transport of serotonin molecules from the synaptic cleft back into the pre-synaptic terminal for re-utilization. Plays a key role in mediating regulation of the availability of serotonin to other receptors of serotonergic systems. Terminates the action of serotonin and recycles it in a sodium-dependent manner.

Bos taurus (taxid: 9913)

>sp|O35899|SC6A4_CAVPO Sodium-dependent serotonin transporter OS=Cavia porcellus GN=SLC6A4 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/226 (27%), Positives = 96/226 (42%), Gaps = 83/226 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           M   GGIPLFYMELALGQ+HR G I+ W +I P+FKG    +  +A        F    Y
Sbjct: 124 MAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYTICIIA--------FYIASY 175

Query: 61  FNGLLSGVLV-----------------------LTQHLNGN-----------------RY 80
           +N +++  L                         T + + +                 R+
Sbjct: 176 YNTIIAWALYYLISSFTDRLPWTSCRNSWNTANCTNYFSEDNITWTLHSTSPAEEFYIRH 235

Query: 81  ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSG----------------- 123
           IL++  S GL D+G + W + LC++ ++ I YFS+WKG+ TSG                 
Sbjct: 236 ILQIHRSKGLQDVGGVSWQLTLCIMLIFTIIYFSIWKGVKTSGKVVWVTATFPYIVLSVL 295

Query: 124 -----------KGIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                      KG+ +YL+PN+  + ++ V  D +       GPG 
Sbjct: 296 LVRGATLPGAWKGVLFYLKPNWQKLLETGVWIDAAAQIFFSLGPGF 341

Serotonin transporter whose primary function in the central nervous system involves the regulation of serotonergic signaling via transport of serotonin molecules from the synaptic cleft back into the pre-synaptic terminal for re-utilization. Plays a key role in mediating regulation of the availability of serotonin to other receptors of serotonergic systems. Terminates the action of serotonin and recycles it in a sodium-dependent manner.

Cavia porcellus (taxid: 10141)

>sp|P51905|SC6A4_DROME Sodium-dependent serotonin transporter OS=Drosophila melanogaster GN=SerT PE=2 SV=1

 Score = 86.7 bits (213), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/67 (68%), Positives = 53/67 (79%), Gaps = 4/67 (5%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDE 206
            GPGLVFIVYP AIATM GS+FWS+IFF+ML+TLGLDS+FGG EA+ITAL D    PR  
Sbjct: 392 EGPGLVFIVYPEAIATMSGSVFWSIIFFLMLITLGLDSTFGGLEAMITALCD--EYPR-- 447

Query: 207 LAGFRSE 213
           + G R E
Sbjct: 448 VIGRRRE 454

Terminates the action of serotonin by its high affinity sodium-dependent reuptake into presynaptic terminals.

Drosophila melanogaster (taxid: 7227)

>sp|P23975|SC6A2_HUMAN Sodium-dependent noradrenaline transporter OS=Homo sapiens GN=SLC6A2 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 49/166 (29%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA-------------SL 48
           L + G+PLFYMELALGQ++R+GA T W +I P FKG    +  +A             SL
Sbjct: 102 LIIAGMPLFYMELALGQYNREGAATVW-KICPFFKGVGYAVILIALYVGFYYNVIIAWSL 160

Query: 49  ------------------TWPPALFIDGKYFNGLLSGVLVLTQHLNGNRY---------- 80
                             TW      D K  NG      VL  H   ++Y          
Sbjct: 161 YYLFSSFTLNLPWTDCGHTWNSPNCTDPKLLNGS-----VLGNHTKYSKYKFTPAAEFYE 215

Query: 81  --ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
             +L +  S+G+HD+G  +W + LCL+ V ++ YFS+WKG+ TSGK
Sbjct: 216 RGVLHLHESSGIHDIGLPQWQLLLCLMVVVIVLYFSLWKGVKTSGK 261

Amine transporter. Terminates the action of noradrenaline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Homo sapiens (taxid: 9606)

>sp|Q03614|NTDO_CAEEL Sodium-dependent dopamine transporter OS=Caenorhabditis elegans GN=dat-1 PE=2 SV=3

 Score = 84.0 bits (206), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 39/52 (75%), Positives = 47/52 (90%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
            GPGLVF+VYP A++TMP + FWS++FF+ML+TLGLDSSFGGSEAIIT LSD
Sbjct: 378 EGPGLVFVVYPEALSTMPYAPFWSVLFFLMLMTLGLDSSFGGSEAIITGLSD 429

Terminates the action of dopamine by its high affinity sodium-dependent reuptake into presynaptic terminals.

Caenorhabditis elegans (taxid: 6239)

>sp|O55192|SC6A2_MOUSE Sodium-dependent noradrenaline transporter OS=Mus musculus GN=Slc6a2 PE=2 SV=2

 Score = 82.8 bits (203), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/168 (32%), Positives = 77/168 (45%), Gaps = 49/168 (29%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG--------------------KMTR 41
           L + G+PLFYMELALGQ++R+GA T W +I P FKG                      + 
Sbjct: 102 LIIAGMPLFYMELALGQYNREGAATVW-KICPFFKGVGYAVILIALYVGFYYNVIIAWSL 160

Query: 42  LARMASLT-----------WPPALFIDGKYFNGLLSGVLVLTQHLNGNRY---------- 80
               AS T           W      D K  N       VL  H   ++Y          
Sbjct: 161 YYLFASFTLNLPWTNCGHSWNSPNCTDPKLLNAS-----VLGDHTKYSKYKFTPAAEFYE 215

Query: 81  --ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGI 126
             +L +  S+G+HD+G  +W + LCL+ V ++ YFS+WKG+ TSGK +
Sbjct: 216 RGVLHLHESSGIHDIGLPQWQLLLCLMVVIVVLYFSLWKGVKTSGKVV 263

Amine transporter. Terminates the action of noradrenaline by its high affinity sodium-dependent reuptake into presynaptic terminals.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
270012969	795	hypothetical protein TcasGA2_TC005219 [T	0.926	0.254	0.372	4e-39
189240768	705	PREDICTED: similar to dopamine transport	0.926	0.286	0.372	5e-39
387762416	612	high-affinity dopamine transporter [Gryl	0.678	0.241	0.437	3e-36
390343855	596	PREDICTED: sodium-dependent noradrenalin	0.908	0.332	0.331	8e-35
194757341	594	GF11259 [Drosophila ananassae] gi|190622	0.692	0.254	0.456	3e-34
158285793	665	AGAP007367-PA [Anopheles gambiae str. PE	0.692	0.227	0.422	3e-33
307189955	682	Sodium-dependent dopamine transporter [C	0.692	0.221	0.383	2e-30
328722167	544	PREDICTED: sodium-dependent dopamine tra	0.692	0.277	0.382	3e-30
297700447	608	PREDICTED: sodium-dependent serotonin tr	0.866	0.310	0.306	1e-29
157125171	670	norepinephrine/norepinephrine transporte	0.555	0.180	0.433	5e-29

>gi|270012969|gb|EFA09417.1| hypothetical protein TcasGA2_TC005219 [Tribolium castaneum]

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 153/349 (43%), Gaps = 147/349 (42%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG---KMTRLARMASLTWPPALFID 57
           ML +GGIPLFYMELALGQF+RKGAITCWGR+ PLFKG    +  +A      +   +   
Sbjct: 283 MLVIGGIPLFYMELALGQFNRKGAITCWGRLCPLFKGIGYAVVLIAFYVDFYYNVIIAWA 342

Query: 58  GKYFNGLLSGVLVLTQHLN-------------------GNRYILEMQHSTG--------- 89
            ++F    + +L  T   N                    N+  L +Q ++G         
Sbjct: 343 LRFFFASFTDMLPWTTCDNPWNTPNCRPFDFPSRNLTENNKTDLSIQPNSGLDSRFASAA 402

Query: 90  ----------------LHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK--------- 124
                           LHDLG IKWDMALCLLAVY+ICYFS+WKGISTSGK         
Sbjct: 403 SEYFNRAILELHQSKGLHDLGAIKWDMALCLLAVYVICYFSLWKGISTSGKVVWFTALFP 462

Query: 125 -------------------GIKYYLQPNFDAITKSEVSGDTS-------GPGLVFI---- 154
                              GIKYYL PNF+AIT +EV  D +       GPG   +    
Sbjct: 463 YAVLLILLVRGITLPGSAEGIKYYLNPNFNAITSAEVWVDAATQVFFSLGPGFGVLLAYA 522

Query: 155 --------VYPAAIATM------------------------------------PGSIF-- 168
                   VY  AI T                                     PG +F  
Sbjct: 523 SYNKYHNNVYKDAILTSVINSATSFIAGFVIFSVLGYMAHAAGCSIQEVATEGPGLVFVV 582

Query: 169 -------------WSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
                        W+LIFFMMLLTLGLDSSFGGSEAIITALSD    PR
Sbjct: 583 YPAAIATMPGSIFWALIFFMMLLTLGLDSSFGGSEAIITALSD--EFPR 629

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240768|ref|XP_001808177.1| PREDICTED: similar to dopamine transporter [Tribolium castaneum]

 Score =  166 bits (421), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 130/349 (37%), Positives = 153/349 (43%), Gaps = 147/349 (42%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG---KMTRLARMASLTWPPALFID 57
           ML +GGIPLFYMELALGQF+RKGAITCWGR+ PLFKG    +  +A      +   +   
Sbjct: 218 MLVIGGIPLFYMELALGQFNRKGAITCWGRLCPLFKGIGYAVVLIAFYVDFYYNVIIAWA 277

Query: 58  GKYFNGLLSGVLVLTQHLN-------------------GNRYILEMQHSTG--------- 89
            ++F    + +L  T   N                    N+  L +Q ++G         
Sbjct: 278 LRFFFASFTDMLPWTTCDNPWNTPNCRPFDFPSRNLTENNKTDLSIQPNSGLDSRFASAA 337

Query: 90  ----------------LHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK--------- 124
                           LHDLG IKWDMALCLLAVY+ICYFS+WKGISTSGK         
Sbjct: 338 SEYFNRAILELHQSKGLHDLGAIKWDMALCLLAVYVICYFSLWKGISTSGKVVWFTALFP 397

Query: 125 -------------------GIKYYLQPNFDAITKSEVSGDTS-------GPGLVFI---- 154
                              GIKYYL PNF+AIT +EV  D +       GPG   +    
Sbjct: 398 YAVLLILLVRGITLPGSAEGIKYYLNPNFNAITSAEVWVDAATQVFFSLGPGFGVLLAYA 457

Query: 155 --------VYPAAIATM------------------------------------PGSIF-- 168
                   VY  AI T                                     PG +F  
Sbjct: 458 SYNKYHNNVYKDAILTSVINSATSFIAGFVIFSVLGYMAHAAGCSIQEVATEGPGLVFVV 517

Query: 169 -------------WSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
                        W+LIFFMMLLTLGLDSSFGGSEAIITALSD    PR
Sbjct: 518 YPAAIATMPGSIFWALIFFMMLLTLGLDSSFGGSEAIITALSD--EFPR 564

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|387762416|dbj|BAM15639.1| high-affinity dopamine transporter [Gryllus bimaculatus]

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 102/233 (43%), Positives = 116/233 (49%), Gaps = 85/233 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA-------------- 46
           MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG    +  +A              
Sbjct: 82  MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGIGYAVVLIAFYVDFYYNVIIAWA 141

Query: 47  ----------SLTWPPA-----------LFIDGKYFNGLLSGVLVLTQHLNG-------- 77
                     SL W              L +DG   NG +S   +  +  +         
Sbjct: 142 LRYFFASFTSSLPWTSCGNHWNTPQCRDLDVDG---NGTVSAAAMDAEASDNGSHYTSAA 198

Query: 78  ----NRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK--------- 124
               NR ILE+  S GLHDLG +KWDMALCLLAVYLICYFS+WKGISTSGK         
Sbjct: 199 SEYFNRAILELHESAGLHDLGIVKWDMALCLLAVYLICYFSLWKGISTSGKVVWFTALFP 258

Query: 125 -------------------GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                              GI+YYL PNF AI++ EV  D +       GPG 
Sbjct: 259 YVVLLILLVRGVTLPGSADGIRYYLSPNFSAISRPEVWVDAATQVFFSLGPGF 311

Source: Gryllus bimaculatus

Species: Gryllus bimaculatus

Genus: Gryllus

Family: Gryllidae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390343855|ref|XP_789146.3| PREDICTED: sodium-dependent noradrenaline transporter [Strongylocentrotus purpuratus]

 Score =  152 bits (385), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 104/314 (33%), Positives = 140/314 (44%), Gaps = 116/314 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG---KMTRLA-------------- 43
           ML   GIPLFYMELALGQ+++ G IT W ++ PLFKG    M  +A              
Sbjct: 95  MLIFMGIPLFYMELALGQYNQTGPITVWDKVSPLFKGVGFAMICIAFFVDFYYNVIISYS 154

Query: 44  --------------RMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNG------------ 77
                          + + +W      + ++       ++V+ ++ N             
Sbjct: 155 IYYLIASFQKVLPWSVCTNSWNTNSCFEPRHGPAYNVSIMVVNEYGNNVTDIVNQNVSAA 214

Query: 78  ----NRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK--------- 124
                R +L++  S G+ DLG + W +ALCL AVY+ICYFS+WKGI  SGK         
Sbjct: 215 TEYYERAVLQVHMSAGIDDLGKVVWQLALCLFAVYIICYFSLWKGIKGSGKVVWITATLP 274

Query: 125 -------------------GIKYYLQPNFDAITKSEVSGD-------------------- 145
                              GIKYYL P +D +  + V  D                    
Sbjct: 275 YVVLFCLLIRGVTLPGAGDGIKYYLIPKWDRLLTASVWVDAATQICFSLGPGFGVLLALS 334

Query: 146 ---------------------TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDS 184
                                + GPGLVF+ YP A+ATMPG+  WS++FF+MLLTLGLDS
Sbjct: 335 SYNRFNNNIYNILNACCFFFISQGPGLVFVTYPEALATMPGANVWSVLFFLMLLTLGLDS 394

Query: 185 SFGGSEAIITALSD 198
           SFGGSEAI+T L D
Sbjct: 395 SFGGSEAILTGLGD 408

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|194757341|ref|XP_001960923.1| GF11259 [Drosophila ananassae] gi|190622221|gb|EDV37745.1| GF11259 [Drosophila ananassae]

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 100/219 (45%), Positives = 112/219 (51%), Gaps = 68/219 (31%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA---------SLTWP 51
           ML VGGIPLFYMELALGQ +RKGAITCWGR+VPLFKG    +  +A          + W 
Sbjct: 70  MLVVGGIPLFYMELALGQHNRKGAITCWGRLVPLFKGIGYAVVLIAFYVDFYYNVIIAWS 129

Query: 52  PALF--------------IDGKYFNGLLSGVL-VLTQHLNG---------NRYILEMQHS 87
              F              I G   N   S  L   T H+ G         NRYILE+  S
Sbjct: 130 LRFFFHPLPDRFPGRHVIIFGNTPNCNHSSSLEAPTGHIEGFQSAASEYFNRYILELNQS 189

Query: 88  TGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK----------------------- 124
            G+HDLG IKWDMALCLL VYLICYFS+WKGISTSGK                       
Sbjct: 190 EGIHDLGAIKWDMALCLLIVYLICYFSLWKGISTSGKVVWFTALFPYVVLLILLIRGLTL 249

Query: 125 -----GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                GI+YYL PNF AI K+EV  D +       GPG 
Sbjct: 250 PGSFLGIQYYLTPNFSAIYKAEVWVDAATQVFFSLGPGF 288

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285793|ref|XP_308462.4| AGAP007367-PA [Anopheles gambiae str. PEST] gi|157020163|gb|EAA04277.4| AGAP007367-PA [Anopheles gambiae str. PEST]

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 114/239 (47%), Gaps = 88/239 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA-------------S 47
           ML VGGIPLFYMELALGQF+RKGAITCWGR+VPLFKG    +  +A             S
Sbjct: 127 MLVVGGIPLFYMELALGQFNRKGAITCWGRLVPLFKGIGYAVVLIAFYVDFYYNVIIAWS 186

Query: 48  LTWPPALFIDG------------------KYFNGLLSGVLVLTQHLNGN----------- 78
           L +  A F D                    Y N   + V+  T  L  N           
Sbjct: 187 LRFFFASFTDSLPWTHCSNAWNTVECKPFGYINSTAATVVNRTGVLAANVTSTVSTINDT 246

Query: 79  -----------RYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK--- 124
                      RYILE+  S G+HDLG IKWDMALCLLAVYLICYFS+WKGISTSGK   
Sbjct: 247 KFASAASEYFNRYILELDKSEGIHDLGAIKWDMALCLLAVYLICYFSLWKGISTSGKVVW 306

Query: 125 -------------------------GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                                    GI YYL+PNFD I  +EV  D +       GPG 
Sbjct: 307 FTALFPYAVLLILLVRGITLPGSAEGILYYLRPNFDVIYNAEVWVDAATQVFFSLGPGF 365

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189955|gb|EFN74191.1| Sodium-dependent dopamine transporter [Camponotus floridanus]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/245 (38%), Positives = 114/245 (46%), Gaps = 94/245 (38%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG---KMTRLARMASLTWPPALFID 57
           ML VGGIPLFYMELALGQF+RKGAITCWGR+VPLFKG    +  +A      +   +   
Sbjct: 105 MLVVGGIPLFYMELALGQFNRKGAITCWGRLVPLFKGIGYAVVLIAFYVDFYYNVIIAWS 164

Query: 58  GKYFNGLLSGVLVLT--------------------------QHLNGN-----RYILE--- 83
            +YF    S +L  T                            +NGN     R++++   
Sbjct: 165 LRYFFASFSTMLPWTTCNNPWNTPLCREFDANVSYAFDDVANEINGNIGNVTRFLIDQKS 224

Query: 84  ----------------------MQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGIST 121
                                 +  S GLHDLG I+WD+ALCLL VYLICYFS+WKGIST
Sbjct: 225 EAASADNHTSAAHEYFNRAILELHESEGLHDLGAIRWDIALCLLVVYLICYFSLWKGIST 284

Query: 122 SGK----------------------------GIKYYLQPNFDAITKSEVSGDTS------ 147
           SGK                            GI+YYL PNF AITK+EV  D +      
Sbjct: 285 SGKVVWFTALFPYAVLLILLIRGVTLPGSTEGIRYYLSPNFAAITKAEVWVDAATQVFFS 344

Query: 148 -GPGL 151
            GPG 
Sbjct: 345 LGPGF 349

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722167|ref|XP_001944109.2| PREDICTED: sodium-dependent dopamine transporter-like, partial [Acyrthosiphon pisum]

 Score =  137 bits (346), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 88/230 (38%), Positives = 107/230 (46%), Gaps = 79/230 (34%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA---------SLTWP 51
           ML VGGIPLFYMELALGQF++ GAITCWGR+VPLFKG    +  +A          + W 
Sbjct: 9   MLLVGGIPLFYMELALGQFYQTGAITCWGRLVPLFKGIGYSVVLIAFYVDFYYNVIIAWA 68

Query: 52  PALFI------------DGKYFNGLLSGVLVLTQHLNGN--------------------- 78
              F+            D  +       + + +   + N                     
Sbjct: 69  LRFFLASFTNILPWTTCDNDWNTDFCQPLTIWSNDSSLNSIDNVTVLANDSRLASASSEY 128

Query: 79  --RYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK------------ 124
             R +LE+ HS G+HDLGYIKWDMA CL  VYLICYFS+WKGISTSGK            
Sbjct: 129 WLRRVLELNHSEGIHDLGYIKWDMAGCLFLVYLICYFSLWKGISTSGKVVWFTALFPYVV 188

Query: 125 ----------------GIKYYLQPNFDAITKSEVSGDTS-------GPGL 151
                           G++YYL PNF  I K EV  D +       GPG 
Sbjct: 189 LIFLLIRGITLPGSAQGVRYYLYPNFSMIAKPEVWVDAATQVFFSLGPGF 238

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|297700447|ref|XP_002827266.1| PREDICTED: sodium-dependent serotonin transporter [Pongo abelii]

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/316 (30%), Positives = 136/316 (43%), Gaps = 127/316 (40%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           M   GGIPLFYMELALGQ+HR G I+ W +I P+FKG    +  +A        F    Y
Sbjct: 124 MAIFGGIPLFYMELALGQYHRNGCISIWRKICPIFKGIGYAICIIA--------FYIASY 175

Query: 61  FNGLLSGVLV-----LTQHL----------NGN-------------------------RY 80
           +N +++  L       T  L           GN                         R+
Sbjct: 176 YNTIMAWALYYLISSFTDQLPWTSCKNSWNTGNCTNYFSEDNITWTLHSTSPAEEFYTRH 235

Query: 81  ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK---------------- 124
           +L++  S GL DLG I W +ALC++ ++ + YFS+WKG+ TSGK                
Sbjct: 236 VLQIHRSKGLQDLGGISWQLALCIMLIFTVIYFSIWKGVKTSGKVVWVTATFPYIILSVL 295

Query: 125 ------------GIKYYLQPNFDAITK--------------------------------- 139
                       G+ +YL+PN+  + +                                 
Sbjct: 296 LVRGATLPGAWRGVLFYLKPNWQKLLETGNKAGWKWRGLCWQDRLLTSVVNCMTSFVSGF 355

Query: 140 -----------------SEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGL 182
                            SEV+ D +GP L+FI Y  AIA MP S F+++IFF+ML+TLGL
Sbjct: 356 VIFTVLGYMAEMRNEDVSEVAKD-AGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGL 414

Query: 183 DSSFGGSEAIITALSD 198
           DS+F G E +ITA+ D
Sbjct: 415 DSTFAGLEGVITAVLD 430

Source: Pongo abelii

Species: Pongo abelii

Genus: Pongo

Family: Hominidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|157125171|ref|XP_001654246.1| norepinephrine/norepinephrine transporter [Aedes aegypti] gi|108873744|gb|EAT37969.1| AAEL010106-PA [Aedes aegypti]

 Score =  133 bits (335), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 95/219 (43%), Positives = 101/219 (46%), Gaps = 98/219 (44%)

Query: 78  NRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK------------- 124
           NRYILE+  S GLHDLG IKWDMALCLLAVYLICYFS+WKGISTSGK             
Sbjct: 262 NRYILELDKSAGLHDLGTIKWDMALCLLAVYLICYFSLWKGISTSGKVVWFTALFPYAVL 321

Query: 125 ---------------GIKYYLQPNFDAITKSEVSGDTS-------GPGLVFI-------- 154
                          GIKYYL P FD I K EV  D +       GPG   +        
Sbjct: 322 LILLVRGITLPGSADGIKYYLSPRFDMIEKPEVWVDAATQVFFSLGPGFGVLLAYASYNK 381

Query: 155 ----VYPAAIATM------------------------------------PGSIF------ 168
               VY  AI T                                     PG +F      
Sbjct: 382 YHNNVYKDAILTSCINSATSFVAGFVIFSVLGYMAHASGQDIEDVATEGPGLVFVVYPAA 441

Query: 169 ---------WSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
                    W+LIFFMMLLTLGLDSSFGGSEAIITALSD
Sbjct: 442 IATMPGSIFWALIFFMMLLTLGLDSSFGGSEAIITALSD 480

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	218
FB|FBgn0034136	631	DAT "Dopamine transporter" [Dr	0.243	0.083	0.905	4.9e-57
WB|WBGene00000934	615	dat-1 [Caenorhabditis elegans	0.233	0.082	0.764	8.1e-43
UNIPROTKB|F1NZX8	559	LOC427700 "Transporter" [Gallu	0.261	0.101	0.603	8.1e-39
UNIPROTKB|F1RN70	630	SLC6A4 "Transporter" [Sus scro	0.266	0.092	0.593	2e-38
UNIPROTKB|Q9DGN5	635	SLC6A2 "Transporter" [Gallus g	0.243	0.083	0.660	2.2e-38
UNIPROTKB|J3KPR9	618	SLC6A4 "Transporter" [Homo sap	0.266	0.093	0.593	2.3e-38
UNIPROTKB|F1PXA1	630	SLC6A4 "Transporter" [Canis lu	0.266	0.092	0.593	2.5e-38
UNIPROTKB|P31645	630	SLC6A4 "Sodium-dependent serot	0.266	0.092	0.593	2.5e-38
UNIPROTKB|Q9MYX0	630	SLC6A4 "Sodium-dependent serot	0.266	0.092	0.593	2.5e-38
UNIPROTKB|F1LQW0	567	Slc6a2 "Transporter" [Rattus n	0.243	0.093	0.641	4.2e-38

FB|FBgn0034136 DAT "Dopamine transporter" [Drosophila melanogaster (taxid:7227)]

 Score = 246 (91.7 bits), Expect = 4.9e-57, Sum P(3) = 4.9e-57
 Identities = 48/53 (90%), Positives = 50/53 (94%)

Query:   146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             T GPGLVF+VYPAAIATMP S FW+LIFFMMLLTLGLDSSFGGSEAIITALSD
Sbjct:   383 TEGPGLVFVVYPAAIATMPASTFWALIFFMMLLTLGLDSSFGGSEAIITALSD 435

GO:0005330 "dopamine:sodium symporter activity" evidence=ISS

GO:0005329 "dopamine transmembrane transporter activity" evidence=IDA;NAS

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0019811 "cocaine binding" evidence=NAS;IDA

GO:0015872 "dopamine transport" evidence=IDA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0042745 "circadian sleep/wake cycle" evidence=IDA

GO:0030431 "sleep" evidence=IMP

WB|WBGene00000934 dat-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 212 (79.7 bits), Expect = 8.1e-43, Sum P(3) = 8.1e-43
 Identities = 39/51 (76%), Positives = 47/51 (92%)

Query:   148 GPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             GPGLVF+VYP A++TMP + FWS++FF+ML+TLGLDSSFGGSEAIIT LSD
Sbjct:   379 GPGLVFVVYPEALSTMPYAPFWSVLFFLMLMTLGLDSSFGGSEAIITGLSD 429

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0051583 "dopamine uptake involved in synaptic transmission" evidence=IDA

GO:0015837 "amine transport" evidence=IMP

GO:0006821 "chloride transport" evidence=IDA

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0005330 "dopamine:sodium symporter activity" evidence=IDA

GO:0005275 "amine transmembrane transporter activity" evidence=IMP

GO:0005254 "chloride channel activity" evidence=IDA

UNIPROTKB|F1NZX8 LOC427700 "Transporter" [Gallus gallus (taxid:9031)]

 Score = 181 (68.8 bits), Expect = 8.1e-39, Sum P(3) = 8.1e-39
 Identities = 35/58 (60%), Positives = 47/58 (81%)

Query:   141 EVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             +V+ D  GP L+FI YP AIA M GS F+++IFF+M++TLGLDS+FGG EA+ITA+ D
Sbjct:   326 DVARD-KGPSLLFITYPEAIANMVGSTFFAIIFFLMMITLGLDSTFGGLEAVITAVMD 382

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1RN70 SLC6A4 "Transporter" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query:   140 SEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             SEV+ D +GP L+FI Y  AIA MP S F+++IFF+ML+TLGLDS+F G E +ITA+ D
Sbjct:   395 SEVAKD-AGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLD 452

GO:0071310 "cellular response to organic substance" evidence=IEA

GO:0051610 "serotonin uptake" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

GO:0048854 "brain morphogenesis" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0015222 "serotonin transmembrane transporter activity" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005335 "serotonin:sodium symporter activity" evidence=IEA

UNIPROTKB|Q9DGN5 SLC6A2 "Transporter" [Gallus gallus (taxid:9031)]

 Score = 194 (73.4 bits), Expect = 2.2e-38, Sum P(3) = 2.2e-38
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query:   146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             T G GLVFI+YP AI+T+ GS FW+++FF+MLLTLG+DSS GG EA+IT L+D
Sbjct:   399 TEGAGLVFILYPEAISTLSGSTFWAVVFFIMLLTLGIDSSMGGMEAVITGLAD 451

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0048265 "response to pain" evidence=IEA

UNIPROTKB|J3KPR9 SLC6A4 "Transporter" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.3e-38, Sum P(3) = 2.3e-38
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query:   140 SEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             SEV+ D +GP L+FI Y  AIA MP S F+++IFF+ML+TLGLDS+F G E +ITA+ D
Sbjct:   395 SEVAKD-AGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLD 452

GO:0005335 "serotonin:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0071321 "cellular response to cGMP" evidence=IEA

GO:0001666 "response to hypoxia" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0017022 "myosin binding" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0019811 "cocaine binding" evidence=IEA

GO:0021941 "negative regulation of cerebellar granule cell precursor proliferation" evidence=IEA

GO:0032227 "negative regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0042310 "vasoconstriction" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042713 "sperm ejaculation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0048854 "brain morphogenesis" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

GO:0051015 "actin filament binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0051610 "serotonin uptake" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

UNIPROTKB|F1PXA1 SLC6A4 "Transporter" [Canis lupus familiaris (taxid:9615)]

 Score = 175 (66.7 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query:   140 SEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             SEV+ D +GP L+FI Y  AIA MP S F+++IFF+ML+TLGLDS+F G E +ITA+ D
Sbjct:   395 SEVAKD-AGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLD 452

GO:0071310 "cellular response to organic substance" evidence=IEA

GO:0051610 "serotonin uptake" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

GO:0048854 "brain morphogenesis" evidence=IEA

GO:0046621 "negative regulation of organ growth" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

GO:0045121 "membrane raft" evidence=IEA

GO:0035176 "social behavior" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0015222 "serotonin transmembrane transporter activity" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0009636 "response to toxic substance" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0005335 "serotonin:sodium symporter activity" evidence=IEA

UNIPROTKB|P31645 SLC6A4 "Sodium-dependent serotonin transporter" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query:   140 SEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             SEV+ D +GP L+FI Y  AIA MP S F+++IFF+ML+TLGLDS+F G E +ITA+ D
Sbjct:   395 SEVAKD-AGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLD 452

GO:0001666 "response to hypoxia" evidence=IEA

GO:0007584 "response to nutrient" evidence=IEA

GO:0007613 "memory" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0017022 "myosin binding" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0019811 "cocaine binding" evidence=IEA

GO:0021941 "negative regulation of cerebellar granule cell precursor proliferation" evidence=IEA

GO:0032227 "negative regulation of synaptic transmission, dopaminergic" evidence=IEA

GO:0032355 "response to estradiol stimulus" evidence=IEA

GO:0042310 "vasoconstriction" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042713 "sperm ejaculation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0045665 "negative regulation of neuron differentiation" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

GO:0050998 "nitric-oxide synthase binding" evidence=IEA

GO:0051260 "protein homooligomerization" evidence=IEA

GO:0071300 "cellular response to retinoic acid" evidence=IEA

GO:0071321 "cellular response to cGMP" evidence=IEA

GO:0010008 "endosome membrane" evidence=IEA

GO:0021794 "thalamus development" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0009636 "response to toxic substance" evidence=IDA

GO:0006837 "serotonin transport" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IC

GO:0015222 "serotonin transmembrane transporter activity" evidence=IMP;IDA

GO:0005335 "serotonin:sodium symporter activity" evidence=IMP;IDA

GO:0051610 "serotonin uptake" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0012505 "endomembrane system" evidence=IDA

GO:0051259 "protein oligomerization" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0045121 "membrane raft" evidence=IDA

GO:0008504 "monoamine transmembrane transporter activity" evidence=IDA

GO:0015844 "monoamine transport" evidence=IDA

GO:0035176 "social behavior" evidence=ISS

GO:0046621 "negative regulation of organ growth" evidence=ISS

GO:0048854 "brain morphogenesis" evidence=ISS

UNIPROTKB|Q9MYX0 SLC6A4 "Sodium-dependent serotonin transporter" [Macaca mulatta (taxid:9544)]

 Score = 175 (66.7 bits), Expect = 2.5e-38, Sum P(3) = 2.5e-38
 Identities = 35/59 (59%), Positives = 46/59 (77%)

Query:   140 SEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             SEV+ D +GP L+FI Y  AIA MP S F+++IFF+ML+TLGLDS+F G E +ITA+ D
Sbjct:   395 SEVAKD-AGPSLLFITYAEAIANMPASTFFAIIFFLMLITLGLDSTFAGLEGVITAVLD 452

GO:0005335 "serotonin:sodium symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0015222 "serotonin transmembrane transporter activity" evidence=ISS

GO:0051015 "actin filament binding" evidence=ISS

GO:0051259 "protein oligomerization" evidence=ISS

GO:0051610 "serotonin uptake" evidence=ISS

UNIPROTKB|F1LQW0 Slc6a2 "Transporter" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 4.2e-38, Sum P(3) = 4.2e-38
 Identities = 34/53 (64%), Positives = 44/53 (83%)

Query:   146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             T G GLVF++YP AI+T+ GS FW+++FF+MLL LGLDSS GG EA+IT L+D
Sbjct:   331 TEGAGLVFVLYPEAISTLSGSTFWAVLFFLMLLALGLDSSMGGMEAVITGLAD 383

GO:0005328 "neurotransmitter:sodium symporter activity" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	218
cd11556	552	cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub	2e-39
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	1e-27
cd11556	552	cd11556, SLC6sbd_SERT-like_u1, uncharacterized sub	2e-27
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	4e-26
cd11496	543	cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen	6e-22
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	2e-21
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	7e-20
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	8e-20
pfam00209	506	pfam00209, SNF, Sodium:neurotransmitter symporter	1e-19
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	5e-19
cd11496	543	cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-depen	2e-18
cd11512	560	cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent n	1e-17
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	1e-17
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	3e-17
cd11514	555	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent	3e-17
cd10324	417	cd10324, SLC6sbd, Solute carrier 6 family, neurotr	8e-17
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	1e-16
cd11497	539	cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-depen	2e-16
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	5e-16
cd11500	544	cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent	7e-16
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	3e-15
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	6e-15
cd11509	592	cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c	7e-15
cd10332	565	cd10332, SLC6sbd-B0AT-like, System B(0) neutral am	5e-14
cd11514	555	cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent	8e-14
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	1e-13
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	2e-13
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	2e-13
cd11509	592	cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent c	3e-13
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	4e-13
cd11513	537	cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent	2e-12
cd11511	541	cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent	1e-11
cd11508	542	cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent	1e-11
cd11554	406	cd11554, SLC6sbd_u2, uncharacterized eukaryotic so	2e-11
cd11507	544	cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent	3e-11
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	4e-11
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	5e-11
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	7e-11
cd11517	576	cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3	1e-10
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	7e-10
cd10334	480	cd10334, SLC6sbd_u1, uncharacterized bacterial and	9e-10
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	1e-09
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	2e-09
cd11516	581	cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral am	3e-09
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	3e-09
cd11510	542	cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent	5e-09
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	5e-09
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	2e-08
cd10336	439	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfa	4e-08
cd11518	576	cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent	5e-08
cd11521	589	cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransm	1e-07
COG0733	439	COG0733, COG0733, Na+-dependent transporters of th	2e-07
cd11498	585	cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent	3e-07
cd11515	530	cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurot	6e-07
cd11506	598	cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent	9e-07
cd11502	543	cd11502, SLC6sbd_NTT5, Neurotransmitter transporte	1e-06
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	2e-06
cd11501	601	cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent	1e-05
cd11522	580	cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-ch	4e-04
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	0.001
cd11499	606	cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent	0.002
cd10334	480	cd10334, SLC6sbd_u1, uncharacterized bacterial and	0.003

>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain

 Score =  141 bits (358), Expect = 2e-39
 Identities = 81/235 (34%), Positives = 101/235 (42%), Gaps = 86/235 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA-------------- 46
           ML VGGIPLFYMELALGQ++RKGAIT WGRI PLFKG    +  +A              
Sbjct: 46  MLVVGGIPLFYMELALGQYYRKGAITSWGRICPLFKGIGYAVVLIAFYVDFFYNVIIAWS 105

Query: 47  ---------------------------SLTWPPALFIDGKYFNGLLSGVLVLTQHLNG-- 77
                                         W     +  +  N   S    ++       
Sbjct: 106 LYYFFASFTFNLPWTSCNNSWNTPNCYEPHWSEDGTVPCRSANQSFSA-TNISAAEENFT 164

Query: 78  -------NRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK------ 124
                   R +LE+  S G+ DLG I+W + LCL AVYLICYFS+WKGI TSGK      
Sbjct: 165 SAALEYFERGVLELHVSRGVTDLGNIRWQILLCLFAVYLICYFSLWKGIHTSGKVVWFTA 224

Query: 125 ----------------------GIKYYLQPNFDAITKSEVSGDTS-------GPG 150
                                 GI+YYL+PNF+A+  +EV  D +       GPG
Sbjct: 225 LFPYVVLFILLIRGVTLPGSQNGIEYYLRPNFEALKSAEVWVDAATQVFFSLGPG 279

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score =  108 bits (273), Expect = 1e-27
 Identities = 56/198 (28%), Positives = 83/198 (41%), Gaps = 61/198 (30%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMAS---------LTWP 51
            L   GIPLF++ELALGQ+ R+GAI  W +I PLFKG       +           + W 
Sbjct: 46  FLITAGIPLFFLELALGQYTREGAIGVWRKICPLFKGIGYASMVIVFYIGIYYNVIIAW- 104

Query: 52  PALFIDGKYFNGLLSGVLVLTQHLNG----------------NRYILEMQHSTGLHDLGY 95
            AL+    Y     +  L      N                  R +L++  S G+ DLG 
Sbjct: 105 -ALY----YLFSSFTTELPWASCNNSWNTPRCEKTSPVEEFWERKVLKL--SDGIEDLGG 157

Query: 96  IKWDMALCLLAVYLICYFSMWKGISTSGK----------------------------GIK 127
           ++W + LCLL  +++ YF +WKG+ +SGK                            GI 
Sbjct: 158 LRWPLTLCLLVAWVVVYFCIWKGVKSSGKVVYFTATFPYVVLLVLLVRGVTLPGAADGID 217

Query: 128 YYLQPNFDAITKSEVSGD 145
           +YL P++  +   +V  D
Sbjct: 218 FYLTPDWSKLLDPQVWID 235

Length = 506

>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the SERT-like Na(+)- and Cl(-)-dependent monoamine transporter subfamily; solute binding domain

 Score =  108 bits (271), Expect = 2e-27
 Identities = 44/53 (83%), Positives = 50/53 (94%)

Query: 146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           T GPGLVF+VYP A++TMPGS FWSL+FF+ML+TLGLDSSFGGSEAIITALSD
Sbjct: 338 TEGPGLVFVVYPEALSTMPGSTFWSLLFFLMLMTLGLDSSFGGSEAIITALSD 390

SERT-like Na(+)- and Cl(-)-dependent monoamine transporters, transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: the norepinephrine transporter NET, the serotonin transporter SERT , and the dopamine transporter DAT1. These latter may play a role in diseases or disorders including depression, anxiety disorders, and attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. They belongs to the solute carrier 6 (SLC6) transporter family. Members of this subgroup are uncharacterized. Length = 552

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score =  104 bits (262), Expect = 4e-26
 Identities = 40/53 (75%), Positives = 47/53 (88%)

Query: 146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           T GPGLVFIVYP AIAT+PGS FW++IFF+ML+TLGLDS+FGG EA+IT L D
Sbjct: 324 TEGPGLVFIVYPEAIATLPGSTFWAIIFFLMLITLGLDSTFGGLEAVITGLCD 376

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

 Score = 92.6 bits (231), Expect = 6e-22
 Identities = 56/210 (26%), Positives = 89/210 (42%), Gaps = 74/210 (35%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG----KMTRLARMAS-----LTWPP 52
           L + GIP+F++E+ALGQ+  +G IT W +I PLFKG        +  +       L W  
Sbjct: 47  LVLCGIPIFFLEVALGQYTSQGGITAW-KICPLFKGIGYASAVIVFWLNIYYIVILAW-- 103

Query: 53  ALF------------------------IDGKYFNGLLSGVLVLTQHLNG--------NRY 80
           ALF                        ++    N L +     + + N          R 
Sbjct: 104 ALFYLFNSFTSELPWTTCDNWWNTECCVETYSNNNLSNLTKNCSNNTNSTSPVEEFWERR 163

Query: 81  ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK---------------- 124
           +L +  S G+ D+G I+W++ALCLL  ++ICYF +WKG+ ++GK                
Sbjct: 164 VLGI--SDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVMLIIL 221

Query: 125 ------------GIKYYLQPNFDAITKSEV 142
                       GI +YL+P+   +   +V
Sbjct: 222 LIRGVTLPGASDGIYFYLKPDLTKLLDPQV 251

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score = 91.2 bits (227), Expect = 2e-21
 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 28/93 (30%)

Query: 78  NRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK------------- 124
            R +LE+Q S G+ DLG  KW +ALCL AV++I YFS+WKG+ +SGK             
Sbjct: 158 ERKVLELQKSEGIDDLGGPKWQLALCLFAVFIIVYFSLWKGVKSSGKVVWVTATMPYVVL 217

Query: 125 ---------------GIKYYLQPNFDAITKSEV 142
                          GIKYYL PN+  +   +V
Sbjct: 218 SILLIRGLTLPGASDGIKYYLTPNWSKLKDPKV 250

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score = 86.8 bits (215), Expect = 7e-20
 Identities = 32/53 (60%), Positives = 43/53 (81%)

Query: 146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
            +GP L+FI Y  AIA MPGS F+++IFF+M++TLGLDS+FGG E +ITA+ D
Sbjct: 322 DAGPSLLFITYAEAIANMPGSTFFAIIFFLMIITLGLDSTFGGLEGVITAVLD 374

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score = 86.4 bits (215), Expect = 8e-20
 Identities = 31/59 (52%), Positives = 36/59 (61%)

Query: 146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
             GPGL F+VYP AIA MP    WS++FF ML  LGLDS F   E I+TA+ D     R
Sbjct: 261 KGGPGLAFVVYPEAIAKMPVPQLWSVLFFFMLFLLGLDSQFAIVETIVTAIVDEFPKLR 319

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family

 Score = 86.2 bits (214), Expect = 1e-19
 Identities = 35/52 (67%), Positives = 41/52 (78%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           SGPGL FI YP A+  +P S FWS++FF+ML+TLGLDS FGG E IITAL D
Sbjct: 307 SGPGLAFIAYPEAVTMLPLSPFWSVLFFLMLITLGLDSQFGGVEGIITALVD 358

Length = 506

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score = 84.6 bits (209), Expect = 5e-19
 Identities = 55/169 (32%), Positives = 75/169 (44%), Gaps = 55/169 (32%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA-------------SL 48
           L + G+PLFYMELALGQ++R+GA T W +I P FKG    +  +A             SL
Sbjct: 47  LIIAGMPLFYMELALGQYNREGAATVW-KICPCFKGVGYAVILIALYVGFYYNVIIAWSL 105

Query: 49  ------------------TWPPALFIDGKYFNGLLSGVLVLTQHLNGNRY---------- 80
                              W      D K  N  + G        NG +Y          
Sbjct: 106 YYLFSSFTSELPWTTCGNVWNSPNCTDPKLLNASVLG--------NGTKYSKYKLTPAAE 157

Query: 81  -----ILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
                +L +  S G+HDLG  +W + LCL  V ++ +FS+WKG+ TSGK
Sbjct: 158 FYERGVLHLHESAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKGVKTSGK 206

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine transporter TauT, and related proteins; solute-binding domain

 Score = 82.2 bits (204), Expect = 2e-18
 Identities = 28/52 (53%), Positives = 37/52 (71%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           SGPGL FI YP A++ +P    W+++FF+MLL LGLDS F G E  +TA+ D
Sbjct: 326 SGPGLAFIAYPRAVSLLPLPQLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVD 377

This subgroup represents the solute-binding domain of TauT-like Na(+)- and Cl(-)-dependent transporters. Family members include: human TauT which transports taurine, human GAT1, GAT2, and GAT3, and BGT1, which transport gamma-aminobutyric acid (GABA), and human CT1 which transports creatine. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine transporter NET; solute-binding domain

 Score = 80.8 bits (199), Expect = 1e-17
 Identities = 35/53 (66%), Positives = 45/53 (84%)

Query: 146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           T G GLVFI+YP AI+T+ GS FW+++FF+MLLTLG+DSS GG EA+IT L+D
Sbjct: 326 TEGAGLVFILYPEAISTLSGSTFWAVVFFIMLLTLGIDSSMGGMEAVITGLAD 378

NET (also called NAT1, NET1), is a transmembrane transporter that transports the neurotransmitter norepinephrine from synaptic spaces into presynaptic neurons. Human NET is encoded by the SLC6A2 gene. NET is expressed in brain, peripheral nervous system, adrenal gland, and placenta. NET may play a role in diseases or disorders including depression, orthostatic intolerance, anorexia nervosa, cardiovascular diseases, alcoholism, and attention-deficit hyperactivity disorder. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 560

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score = 80.6 bits (199), Expect = 1e-17
 Identities = 55/206 (26%), Positives = 86/206 (41%), Gaps = 65/206 (31%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG--------------------KMT 40
           ML   GIPLF+MEL+LGQ+   G +T W +  P+FKG                      T
Sbjct: 46  MLAFCGIPLFFMELSLGQYGSLGPLTVW-KCCPIFKGIGYGMLLVSGLVCIYYNVIIAWT 104

Query: 41  RLARMASLTWPPALFIDGKYFNGLLSGVLVLTQHLNG----------------NRYILEM 84
                AS T        G ++N        +  ++                  NR +L +
Sbjct: 105 LFYLFASFTSVLPWEHCGNWWNTESCLEHRVKDNMGALPVNLTRTVSPSEEYWNRRVLGI 164

Query: 85  QHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK-------------------- 124
           Q S+G+ D G ++W++ALCLL  ++I +F ++KG+ +SGK                    
Sbjct: 165 QGSSGIGDPGEVRWELALCLLLAWVIVFFCLFKGVKSSGKVVYFTATFPYIILIVLLVRG 224

Query: 125 --------GIKYYLQPNFDAITKSEV 142
                   GI++YL P+F  +  S+V
Sbjct: 225 VTLEGALKGIQFYLTPDFHRLASSQV 250

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score = 79.2 bits (195), Expect = 3e-17
 Identities = 50/158 (31%), Positives = 76/158 (48%), Gaps = 37/158 (23%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG---------KMTRLARMASLTWPP 52
           LF  GIPLF++E ALGQ+  +G +T W +I P+F+G             +  +  L+W  
Sbjct: 48  LFTCGIPLFFLETALGQYTSQGGVTAWRKICPIFEGIGYASQVIESYLNVYYIIILSW-- 105

Query: 53  ALFIDGKYFNGLL--------------------SGVLVLTQHLNGNRYILEMQH------ 86
           ALF     F  +L                    SG    T   N    ++E         
Sbjct: 106 ALFYLFSSFTSVLPWATCNNPWNSDLCVDFLNHSGADNRTPPENATSPVMEFWEKRVLGL 165

Query: 87  STGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
           + G+H LG ++W++ALCLL  ++ICYF +WKG+ ++GK
Sbjct: 166 TDGIHKLGTVRWELALCLLLAWIICYFCIWKGVKSTGK 203

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

 Score = 79.2 bits (195), Expect = 3e-17
 Identities = 33/53 (62%), Positives = 43/53 (81%)

Query: 146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
             GPGL+FI+YP AIAT+P S  W++IFF+MLLTLG+DS+ GG E++IT L D
Sbjct: 325 KDGPGLIFIIYPEAIATLPLSSVWAVIFFIMLLTLGIDSAMGGMESVITGLID 377

DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 555

>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter transporters; solute-binding domain

 Score = 77.5 bits (192), Expect = 8e-17
 Identities = 47/170 (27%), Positives = 77/170 (45%), Gaps = 55/170 (32%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           ML + GIPLF++ELALGQ+  +G +  + RI PLFKG     A++         F+   Y
Sbjct: 45  MLLLVGIPLFFLELALGQYTSRGPVGAFWRICPLFKG--VGYAQVV------ISFLVAIY 96

Query: 61  FNGLLSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGIS 120
           +N +++  L          Y+     S       +I W++ALCLL  +++ Y  ++KG+ 
Sbjct: 97  YNVIIAWTL---------YYLF---AS-------FINWELALCLLLAWILVYLCIFKGVK 137

Query: 121 TSGK----------------------------GIKYYLQPNFDAITKSEV 142
           +SGK                            GI Y+L P++  +   +V
Sbjct: 138 SSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGILYFLTPDWSKLLDPKV 187

This family represents the solute-binding domain of SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family). These use sodium and chloride electrochemical gradients to catalyze the thermodynamically uphill movement of a variety of substrates, and include neurotransmitter transporters (NTTs). The latter are Na+/Cl--dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, through facilitating the uptake of released neurotransmitters from the extracellular space into neurons and glial cells. NTTs are the target of a range of therapeutic drugs for the treatment of psychiatric diseases, such as major depression, anxiety disorders, attention deficit hyperactivity disorder and epilepsy. In addition, they are the primary targets of cocaine, amphetamines and other psychostimulants. This family also includes Drosophila Blot which is expressed primarily in epithelial tissues of ectodermal origin and in the nervous system of the embryo and larvae, but in addition found in the developing oocyte and the freshly laid egg. A lack or reduction of Blot function during oogenesis results in early arrest of embryonic development. 12 transmembrane helices (TMs) appears to be common for eukaryotic and some prokaryotic and archaeal SLC6s, (a core inverted topology repeat, TM1-5 and TM6-10, plus TMs11-12; TMs numbered to conform to the SLC6 Aquifex aeolicus LeuT), although a majority of bacterial, and some archaeal SLC6s lack TM12, for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 417

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score = 77.7 bits (192), Expect = 1e-16
 Identities = 30/60 (50%), Positives = 39/60 (65%)

Query: 139 KSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           + E+     G GL FIV+  AI   PG+ FWS++FF+MLLTLGL S FG  E ++T L D
Sbjct: 351 EDELDEAVEGTGLAFIVFTEAIVKFPGAPFWSVLFFLMLLTLGLGSMFGTLEGVLTPLFD 410

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine transporters, SERT, NET, DAT1 and related proteins; solute binding domain

 Score = 77.0 bits (190), Expect = 2e-16
 Identities = 26/37 (70%), Positives = 30/37 (81%)

Query: 1  MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG 37
          ML  GG+PLFYMELALGQ+HR G IT W +I P+FKG
Sbjct: 46 MLIFGGLPLFYMELALGQYHRSGCITVWRKICPIFKG 82

This subgroup represents the solute-binding domain of transmembrane transporters that transport monoamine neurotransmitters from synaptic spaces into presynaptic neurons. Members include: NET which transports norepinephrine, SERT which transports serotonin, and DAT1 which transports dopamine. These transporters may play a role in diseases including depression, anxiety disorders, attention-deficit hyperactivity disorder, and in the control of human behavior and emotional states. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 539

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score = 75.7 bits (186), Expect = 5e-16
 Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 74/211 (35%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG---------KMTRLARMASLTWPP 52
           LF  GIP+F++E ALGQ+  +G +TCW +I PLF+G          +     +  L W  
Sbjct: 47  LFTCGIPVFFLETALGQYTSQGGVTCWRKICPLFEGIGYASQVIVALLNFYYIIVLAW-- 104

Query: 53  ALF------------------------IDGKYFNGLLSGVLVLTQHLNGNRYILE----- 83
           ALF                        ++ +  N  ++  L      N    ++E     
Sbjct: 105 ALFYLFNSFTWELPWSSCNHTWNTENCVEFQKRNYSVNVTLE-----NATSPVIEFWERR 159

Query: 84  -MQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK------------------ 124
            ++ S G+  +G ++W++ALCLL  ++ICYF +WKG+ ++GK                  
Sbjct: 160 VLRISDGIEHIGSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLI 219

Query: 125 ----------GIKYYLQPNFDAITKSEVSGD 145
                     GI++YL P+   +   +V  D
Sbjct: 220 RGVTLPGASLGIQFYLYPDLSRLADPQVWMD 250

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline transporter PROT; solute-binding domain

 Score = 75.2 bits (185), Expect = 7e-16
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           +GPGL F+ YP A+  +P S FWS++FF MLLTLGLDS F   E I+TA++D
Sbjct: 325 AGPGLAFVAYPEALTLLPVSPFWSILFFFMLLTLGLDSQFAMLETIVTAVTD 376

PROT is a high-affinity L-proline transporter that transports L-proline, and may have a role in excitatory neurotransmission. Human PROT is encoded by the SLC6A7 gene, a potential susceptible gene for asthma. PROT is expressed in the brain. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score = 73.5 bits (180), Expect = 3e-15
 Identities = 65/233 (27%), Positives = 103/233 (44%), Gaps = 51/233 (21%)

Query: 1   MLFVG-GIPLFYMELALGQFHRKGAITCWGRIVPLFKG---------KMTRLARMASLTW 50
           + F+  GIP+F++E ALGQF  +G ITCW ++ PLF+G             +  +  L W
Sbjct: 46  VFFICCGIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILAW 105

Query: 51  PPALFIDGKYFNGLLSGVL----------VLTQHLNGNRY-----------ILEMQH--- 86
             A+F     F   L              V  Q LN +             ++E      
Sbjct: 106 --AIFYLFNCFTTELPWATCGHEWNTENCVEFQKLNSSNCSHVSLQNATSPVMEFWERRV 163

Query: 87  ---STGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITK---- 139
              S G+  +G ++W++ALCLLA + ICYF +WKG  ++GK +  Y+   F  I      
Sbjct: 164 LAISDGIEHIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVV--YVTATFPYIMLLILL 221

Query: 140 -SEVSGDTSGPGLVFIVYPAAIATMPGSIFW----SLIFFMMLLTLGLDSSFG 187
              V+   +  G+ F +YP  ++ +     W    + IFF   + LG  ++ G
Sbjct: 222 IRGVTLPGASEGIKFYLYP-DLSRLSDPQVWVDAGTQIFFSYAICLGCLTALG 273

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score = 72.5 bits (178), Expect = 6e-15
 Identities = 30/52 (57%), Positives = 35/52 (67%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           SG  L FI YP A+A +P S  WS++FF MLLTLGLDS F G E I T + D
Sbjct: 346 SGFDLAFIAYPEALAKLPISPLWSILFFFMLLTLGLDSQFAGIETITTTIQD 397

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

 Score = 72.2 bits (177), Expect = 7e-15
 Identities = 58/220 (26%), Positives = 90/220 (40%), Gaps = 81/220 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARM--------------- 45
           ++FVGGIP+F++E+ALGQF ++G I  W  I PLF  K    A M               
Sbjct: 46  IVFVGGIPVFFLEIALGQFMKQGGINAWN-IAPLF--KGLGYASMVIVFFCNTYYIMILV 102

Query: 46  -----------ASLTWPPA-----------LFIDGKYFNGLLSGV-------LVLTQHLN 76
                       +L W              +F      NG L+         L   +  N
Sbjct: 103 WGLYYLVHSFTNTLPWATCGHPWNTENCTEIFRHEDCANGSLANSWSQTFLNLSCDELAN 162

Query: 77  GNRYILE------MQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK------ 124
               ++E      ++ S GL + G + W+M LCLLA ++I YF +WKG+ ++GK      
Sbjct: 163 KRSPVIEFWENKVLRLSGGLEEPGALNWEMILCLLATWVIVYFCVWKGVKSTGKIVYFTA 222

Query: 125 ----------------------GIKYYLQPNFDAITKSEV 142
                                 GI YYL+P++  + +++V
Sbjct: 223 LFPYVVLIVLLVHGVTLPGALDGIIYYLKPDWSKLGEAQV 262

CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 592

>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid transporter AT1, 2 and 3, and related proteins; solute-binding domain

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 46/153 (30%), Positives = 66/153 (43%), Gaps = 37/153 (24%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           ML + GIPLF++ELA+GQ  RKG+I  W  I P   G       +AS       F+   Y
Sbjct: 46  MLVLEGIPLFFLELAIGQRLRKGSIGVWNTISPYLGG-----IGIASCV---VSFLVALY 97

Query: 61  FNGLLSGVL--------------VLTQHLNGNRYILEMQHST---------------GLH 91
           +N +++                     + NG  Y+ E   S+                + 
Sbjct: 98  YNVIIAWCFFYLFNSFQYPLPWSSCPTNGNGTGYVEECAKSSPTQYFWYRTTLDISPSID 157

Query: 92  DLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
           + G + W M LCLL  ++I Y  M KGI +SGK
Sbjct: 158 ESGGLNWWMTLCLLLAWIIVYLCMIKGIKSSGK 190

This subgroup includes the solute-binding domain of transmembrane transporters, which transport, i) neutral amino acids: NTT4 (also called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3), and B0AT1 (also called HND); the human genes encoding these are SLC6A17, SLC6A15, and SLC6A19 respectively, ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino acids, such as proline, pipecolate, MeAIB, and sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The human genes encoding B0AT3 and SIT1 are SLC6A18 and SLC6A20 respectively. Transporters in this subgroup may play a role in disorders including major depression, Hartnup disorder, increased susceptibility to myocardial infarction, and iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 565

>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine transporter 1; solute-binding domain

 Score = 69.2 bits (169), Expect = 8e-14
 Identities = 49/160 (30%), Positives = 70/160 (43%), Gaps = 38/160 (23%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVP---------------------------- 33
           + + G+PLFYMELALGQF+R+GA   W +I P                            
Sbjct: 47  MVIAGMPLFYMELALGQFNREGAAGVW-KICPIFKGVGFTVILISLYVGFFYNVIIAWAL 105

Query: 34  --LFKGKMTRLARM-ASLTW-----PPALFIDGKYFNGLLSGVLVLTQHLNG-NRYILEM 84
             LF      L  +  + +W       A   D    +  L+     T       R +L +
Sbjct: 106 FYLFSSFTGELPWIHCNNSWNSPNCSDAHPGDSSGDSSGLNDTYKTTPAAEYFERGVLHL 165

Query: 85  QHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
             S G+HDLG  +W +  CL+ V ++ YFS+WKG+ TSGK
Sbjct: 166 HESHGIHDLGPPRWQLTSCLVVVIVLLYFSLWKGVKTSGK 205

DAT1 (also called DAT), is a plasma membrane transport protein that functions at the dopaminergic synapses to transport dopamine from the extracellular space back into the presynaptic nerve terminal. Human DAT1 is encoded by the SLC6A3 gene, and is expressed in the brain. DAT1 may play a role in diseases or disorders related to dopaminergic neurons, including attention-deficit hyperactivity disorder (ADHD), Tourette syndrome, Parkinson's disease, alcoholism, drug abuse, schizophrenia, extraversion, and risky behavior. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 555

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score = 68.7 bits (168), Expect = 1e-13
 Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 35/107 (32%)

Query: 79  RYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK-------------- 124
           R++L++  STGL DLG I W +ALCL  ++ I YFS+WKG+ TSGK              
Sbjct: 156 RHVLQVHRSTGLGDLGGISWQLALCLFLIFTIVYFSIWKGVKTSGKVVWVTATFPYIVLF 215

Query: 125 --------------GIKYYLQPNFDAITKSEVSGDTS-------GPG 150
                         G+ YYL+P +  + ++ V  D +       GPG
Sbjct: 216 ILLIRGATLPGAWRGVVYYLKPKWHKLLETGVWVDAAAQIFFSLGPG 262

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score = 68.3 bits (167), Expect = 2e-13
 Identities = 34/67 (50%), Positives = 41/67 (61%), Gaps = 2/67 (2%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDE 206
           SGPGL FI YP A+  MP   FW+++FF+MLL LGLDS F   E  IT+L D    P   
Sbjct: 325 SGPGLAFIAYPKAVTMMPLPTFWAILFFIMLLLLGLDSQFVEVEGQITSLVD--LYPSFL 382

Query: 207 LAGFRSE 213
             G+R E
Sbjct: 383 RKGYRRE 389

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score = 68.1 bits (166), Expect = 2e-13
 Identities = 29/51 (56%), Positives = 40/51 (78%)

Query: 148 GPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           GPG+ F+VYP A+  +P S FW++IFF+MLLTLGLD+ F   E I+T++SD
Sbjct: 352 GPGIAFVVYPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSVSD 402

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine transporter 1; solute-binding domain

 Score = 67.6 bits (165), Expect = 3e-13
 Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDE 206
           SGPGL FI YP A+  MP +  W+ +FF MLL LGLDS F G E  IT + D    P+  
Sbjct: 337 SGPGLAFIAYPKAVTLMPVAPLWAALFFFMLLLLGLDSQFVGVEGFITGILD--LFPQKY 394

Query: 207 LAGFRSEAT 215
               R E T
Sbjct: 395 YGRLRREIT 403

CT1 (also called CRTR, CRT) transports creatine. Human CT1 is encoded by the SLC6A8 gene. CT1 is ubiquitously expressed, with highest levels found in skeletal muscle and kidney. Creatine is absorbed from food or synthesized from arginine and plays an important role in energy metabolism. Deficiency in human CT1 leads to X-linked cerebral creatine transporter deficiency. In males, this disorder is characterized by language and speech delays, autistic-like behavior, seizures in about 50% of cases, and can also involve midfacial hypoplasia, and short stature. In females, it is characterized by mild cognitive impairment with behavior and learning problems. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 592

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score = 67.5 bits (165), Expect = 4e-13
 Identities = 31/58 (53%), Positives = 39/58 (67%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
           SGPGL FIV+  A+  MPG+  W+++FF ML TLGL S FG  E +IT L D   +PR
Sbjct: 364 SGPGLAFIVFTEAVLHMPGAQVWAVLFFGMLFTLGLSSMFGNVEGVITPLLDVGVLPR 421

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin transporter SERT; solute-binding domain

 Score = 65.2 bits (159), Expect = 2e-12
 Identities = 25/37 (67%), Positives = 29/37 (78%)

Query: 1  MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG 37
          M   GGIPLFYMELALGQ+HR G I+ W +I P+FKG
Sbjct: 46 MAIFGGIPLFYMELALGQYHRTGCISIWRKICPIFKG 82

SERT (also called 5-HTT), is a transmembrane transporter that transports the neurotransmitter serotonin from synaptic spaces into presynaptic neurons. The antiport of a K+ ion is believed to follow the transport of serotonin and promote the reorientation of SERT for another transport cycle. Human SERT is encoded by the SLC6A4 gene. SERT is expressed in brain, peripheral nervous system, placenta, epithelium, and platelets. SERT may play a role in diseases or disorders including anxiety, depression, autism, gastrointestinal disorders, premature ejaculation, and obesity. It may also have a role in social cognition. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 537

>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA transporter-1, and related proteins; solute-binding domain

 Score = 62.6 bits (152), Expect = 1e-11
 Identities = 29/52 (55%), Positives = 36/52 (69%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           SGPGL FI YP A+  MP S  WS +FF+ML+ LGLDS F   E+++TA  D
Sbjct: 324 SGPGLAFIAYPTAVTMMPVSQLWSCLFFLMLIFLGLDSQFVCVESMVTASID 375

BGT1 is a relatively low-affinity transporter of gamma-aminobutyric acid (GABA), and can also transport betaine. GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human BGT1 is encoded by the SLC6A12 gene, and is similar to mouse GAT2. Mouse GAT2 plays a role in transporting GABA across the blood-brain barrier. In addition to being expressed in cells of the central nervous system, BGT1 is expressed in peripheral tissues, including kidney, liver, and heart. An association has been shown between the SLC6A12 gene and the occurrence of aspirin-intolerant asthma, and BGT1 is a drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 541

>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter 3; solute-binding domain

 Score = 63.1 bits (153), Expect = 1e-11
 Identities = 33/67 (49%), Positives = 43/67 (64%), Gaps = 2/67 (2%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDE 206
           SGPGL FI YP A+  MP S  W+ +FFMML+ LGLDS F   E+++TA+ D    P+  
Sbjct: 325 SGPGLAFIAYPKAVTMMPLSPLWATLFFMMLIFLGLDSQFVCVESLVTAVVD--MYPKVF 382

Query: 207 LAGFRSE 213
             G+R E
Sbjct: 383 RRGYRRE 389

This family includes human GAT3 (hGAT3) a high-affinity transporter of gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT3 is encoded by the SLC6A11 gene, and is similar to mouse GAT4, and rat GAT3/GATB. GAT3 is expressed primarily in the glia of the brain, and is a potential drug target for antiepileptic drugs. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6 subfamily; solute-binding domain

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 136 AITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITA 195
            +T         G  L F+ YP AIA MPGS F++++FF+ L  LG+ S+F   EA++T 
Sbjct: 246 GMTPGVEGEALGGFVLGFVTYPEAIAQMPGSNFFAVLFFLTLFLLGISSAFALLEAVVTL 305

Query: 196 LSD 198
           + D
Sbjct: 306 ICD 308

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, and are involved in regulating neurotransmitter signaling and homeostasis, and are the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 406

>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter 2; solute-binding domain

 Score = 61.8 bits (150), Expect = 3e-11
 Identities = 30/59 (50%), Positives = 41/59 (69%), Gaps = 2/59 (3%)

Query: 140 SEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           SEV+   SGPGL FI YP A++ MP S  W+  FF+M++ LGLDS F   E+++TA+ D
Sbjct: 317 SEVA--ESGPGLAFIAYPRAVSMMPFSPLWACFFFIMIVLLGLDSQFVCVESLVTAMVD 373

This family includes human GAT2 (hGAT2) which transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. hGAT2 is encoded by the SLC6A13 gene, and is similar to mouse GAT-3, and rat GAT2. hGAT2 is expressed in brain, kidney, lung, and testis. hGAT2 is a potential drug target for treatment of epilepsy. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 544

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score = 61.1 bits (148), Expect = 4e-11
 Identities = 28/52 (53%), Positives = 35/52 (67%)

Query: 147 SGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           SGPGL F+ YP A+  +P S  W+++FF MLL LG+DS F   E  ITAL D
Sbjct: 358 SGPGLAFLAYPEAVTQLPISPLWAVLFFSMLLMLGIDSQFCTVEGFITALVD 409

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score = 61.0 bits (148), Expect = 5e-11
 Identities = 29/76 (38%), Positives = 43/76 (56%), Gaps = 4/76 (5%)

Query: 139 KSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           + E+     G GL FIVY  AI  M  S  WS+++F MLL LG+ S  G + AI+T L+D
Sbjct: 360 EKELDTAVQGTGLAFIVYSEAIKNMEVSQLWSVLYFFMLLMLGIGSMLGNTAAILTPLTD 419

Query: 199 GLA----MPRDELAGF 210
                  +P++ ++G 
Sbjct: 420 SKIISSHLPKEAISGL 435

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score = 60.6 bits (147), Expect = 7e-11
 Identities = 37/108 (34%), Positives = 59/108 (54%), Gaps = 8/108 (7%)

Query: 87  STGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGIKYYLQPNFDAITKSEVSGDT 146
           S+G+  +G IKWD+ALCLL V++IC+F +WKG+ ++GK + +     F  +    + G T
Sbjct: 167 SSGIEHVGTIKWDLALCLLLVWVICFFCIWKGVKSTGKVVYFTATFPFLMLIVLLIRGVT 226

Query: 147 ---SGPGLVFIVYPAAIATMPGSIFW----SLIFFMMLLTLGLDSSFG 187
              +  G+ F +YP  I  +     W    + IFF   + LG  +S G
Sbjct: 227 LPGAAEGIKFYLYP-DITRLGDPQVWIDAGTQIFFSYAICLGAMTSLG 273

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding domain

 Score = 60.2 bits (146), Expect = 1e-10
 Identities = 48/150 (32%), Positives = 69/150 (46%), Gaps = 37/150 (24%)

Query: 6   GIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKYFNGLL 65
           GIPLF++ELA+GQ  RKG+I  W  I P   G       +  +T     F+   Y+N +L
Sbjct: 52  GIPLFHLELAIGQRLRKGSIGVWTTISPYLGG-----VGLGCVT---VSFLVSLYYNTIL 103

Query: 66  SGVLVLTQH------------LNGNR--YILEMQHSTGLH---------------DLGYI 96
           + VL    +            L+ NR  ++ E Q ST +                D G I
Sbjct: 104 AWVLWYFLNSFQHPLPWSSCPLDLNRTGFVEECQGSTAVSYFWYRQTLNITPDINDSGSI 163

Query: 97  KWDMALCLLAVYLICYFSMWKGISTSGKGI 126
           +W + LCL A + I Y  + +GI T+GK I
Sbjct: 164 QWWLLLCLAACWAIVYLCVIRGIETTGKVI 193

B0AT3 (also called Xtrp2, XT2) transports glycine. Human B0AT3 is encoded by the SLC6A18 gene. B0AT3 is expressed in the kidney. Mutations in the SLC6A18 gene may contribute to the autosomal recessive disorder iminoglycinuria and its related disorder hyperglycinuria. SLC6A18 or its neighboring genes are associated with increased susceptibility to myocardial infarction. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score = 57.6 bits (139), Expect = 7e-10
 Identities = 28/66 (42%), Positives = 38/66 (57%)

Query: 139 KSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
            + +S    G GL FIV+  AI  MP S  WS++FF+ML  LGL S FG  E ++  L D
Sbjct: 355 NNFLSEGVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSSMFGNMEGVLVPLQD 414

Query: 199 GLAMPR 204
              +P+
Sbjct: 415 LKVIPK 420

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain

 Score = 57.1 bits (139), Expect = 9e-10
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 3/61 (4%)

Query: 146 TSGPGLVFIVYPAAIATMP--GSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMP 203
           +SG GL F+ +P AI  MP  G++F  ++FF+ L+  GL S     E +I+AL D   + 
Sbjct: 291 SSGIGLAFVAFPKAINLMPPGGALF-GVLFFLSLVFAGLTSLISLVEVVISALQDKFGLS 349

Query: 204 R 204
           R
Sbjct: 350 R 350

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 480

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score = 57.2 bits (138), Expect = 1e-09
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query: 139 KSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           + E+     G GL FI +  A+   P S FWS++FF+ML+ LGL S FG  E I T + D
Sbjct: 319 EDELDKAVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGITTPIVD 378

Query: 199 GLAMPRDEL 207
              + ++ L
Sbjct: 379 TFKVRKEIL 387

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score = 56.9 bits (137), Expect = 2e-09
 Identities = 28/69 (40%), Positives = 41/69 (59%)

Query: 139 KSEVSGDTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           + E++    G GL FI +  A+   P S FWS++FF+ML+ LGL S FG  E IIT + D
Sbjct: 369 EDELNKAVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVD 428

Query: 199 GLAMPRDEL 207
              + ++ L
Sbjct: 429 TFKVRKEIL 437

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids transporter, B0AT1; solute-binding domain

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 37/155 (23%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           +L   GIPL ++E A+GQ  RKG++  W  I P  KG    +A M         F+   Y
Sbjct: 46  LLVFEGIPLLHLEFAIGQRLRKGSVGVWSTIHPTLKG--VGIASMC------VSFLVSLY 97

Query: 61  FNGLLSGVLVL------------TQHLNGNR--YILE---------------MQHSTGLH 91
           +N +++ V+                 LN NR  YI E               +  ST + 
Sbjct: 98  YNTIIAWVMWYFFNSFQEPLPWSQCPLNENRTGYIPECAKSSPVDYFWYRETLNTSTSID 157

Query: 92  DLGYIKWDMALCLLAVYLICYFSMWKGISTSGKGI 126
           D G I+W M LCL   + + Y    +GI T+GK +
Sbjct: 158 DSGGIQWWMVLCLACAWGVLYVCTIRGIETTGKAV 192

B0AT1 (also called HND) transports neutral amino acids. Human B0AT1 is encoded by the SLC6A19 gene. B0AT1 is expressed primarily in the kidney and intestine; it requires collectrin for expression in the kidney, and angiotensin-converting enzyme 2 for expression in the intestine. Interaction with these two proteins implicates B0AT1 in more complex processes such as glomerular structure, exocytosis, and blood pressure control. The autosomal recessive disorder, Hartnup disorder, is caused by mutations in B0AT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 581

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 35/153 (22%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           MLF+ GIPL ++E+A+GQ  ++G+I  W  I P F G        +S+    A F+   Y
Sbjct: 46  MLFLVGIPLLFLEMAVGQRLQQGSIRVWKAISPWFGG-----VGYSSVL---ACFLVALY 97

Query: 61  FNGLLSGVLV----------------LTQHLNGNRYILEMQH-----------STGLHDL 93
           +N + S  L                 L ++ +                     S  + D 
Sbjct: 98  YNVVNSWALFYLGHSFQFPLPWEQCPLVKNSSDPECARTTPSGYFWYQKTLKASDRIEDG 157

Query: 94  GYIKWDMALCLLAVYLICYFSMWKGISTSGKGI 126
           G +   +AL L   + + Y +M +G+ ++GK I
Sbjct: 158 GSLVGHLALSLFVAWCLVYVTMIRGLKSTGKSI 190

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine transporter; solute-binding domain

 Score = 55.2 bits (133), Expect = 5e-09
 Identities = 19/36 (52%), Positives = 29/36 (80%)

Query: 2  LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG 37
          LF GG+P+F++E+ALGQ+  +G ITCW ++ P+F G
Sbjct: 47 LFGGGLPVFFLEVALGQYTSEGGITCWEKLCPIFTG 82

TauT is a Na(+)- and Cl(-)-dependent, high-affinity, low-capacity transporter of taurine and beta-alanine. Human TauT is encoded by the SLC6A6 gene. TauT is expressed in brain, retina, liver, kidney, heart, spleen, and pancreas. It may play a part in the supply of taurine to the intestinal epithelium and in the between-meal-capture of taurine. It may also participate in re-absorbing taurine that has been deconjugated from bile acids in the distal lumen. Functional TauT protects kidney cells from nephrotoxicity caused by the chemotherapeutic agent cisplatin; cisplatin down-regulates TauT in a p53-dependent manner. In mice, TauT has been shown to be important for the maintenance of skeletal muscle function and total exercise capacity. TauT-/- mice develop additional clinically important diseases, some of which are characterized by apoptosis, including vision loss, olfactory dysfunction, and chronic liver disease. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 542

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score = 55.3 bits (133), Expect = 5e-09
 Identities = 25/51 (49%), Positives = 34/51 (66%)

Query: 148 GPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           GPGL F+ YP A+  +P S  WSL+FF ML+ LGL + F   E ++TA+ D
Sbjct: 354 GPGLAFVAYPEALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAVVD 404

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score = 53.4 bits (128), Expect = 2e-08
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 3/97 (3%)

Query: 112 YFSMWKGISTSGKGIKYYLQPNFDA-ITKSEVSGDTSGPGLVFIVYPAAIATMPGSIFWS 170
           Y  M++ I T  +   ++ +   DA + + E+     G GL FI +  A+   P S FWS
Sbjct: 343 YAEMYRVIMTVKED--HFKELGLDACLLEDELDKSVQGTGLAFIAFTEAMTHFPASPFWS 400

Query: 171 LIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDEL 207
           ++FF+ML+ LGL S  G    I T + D   + ++  
Sbjct: 401 VMFFLMLINLGLGSMIGTMSGITTPIIDTFKVRKEVF 437

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain

 Score = 52.4 bits (127), Expect = 4e-08
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
            +GPGL+FI  PA  A MPG   + ++FF++LL   L S+    E  +  L D     R
Sbjct: 277 AAGPGLLFITLPAVFAQMPGGRLFGILFFLLLLFAALTSAISLLEVPVAYLIDEFGWSR 335

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1. Length = 439

>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid transporter SIT1; solute-binding domain

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 37/153 (24%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           ML + G+PL Y+ELA+GQ  R+G+I  W  I P   G       +AS+      F    Y
Sbjct: 49  MLILEGMPLLYLELAVGQRMRQGSIGAWKSISPYLGG-----VGVASVV---VSFFLSMY 100

Query: 61  FNGLLSGVLVLTQH------------LNGNR-----------------YILEMQHSTGLH 91
           +N + +       H            LN NR                 Y   +  S  + 
Sbjct: 101 YNVINAWAFWYLFHSFQDPLPWSVCPLNSNRTGYTEECEKASPTQYFWYRETLNISPSIE 160

Query: 92  DLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
           + G I+W+ ALCL+  +L+ Y  + +G  ++GK
Sbjct: 161 ESGGIQWEQALCLILAWLVVYLCILRGTESTGK 193

SIT1 (also called XTRP3, XT3, IMINO) transports imino acids, such as proline, pipecolate, MeAIB, and sarcosine. It has weak affinity for neutral amino acids such as phenylalanine. Human SIT1 is encoded by the SLC6A20 gene. SIT1 is expressed in brain, kidney, small intestine, thymus, spleen, ovary, and lung. SLC6A20 is a candidate gene for the rare disorder iminoglycinuria. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 576

>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter 4; solute-binding domain

 Score = 51.1 bits (122), Expect = 1e-07
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 39/155 (25%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           +L + GIPLF++ELA+GQ  R+G+I  W  I P       RL  +   +     F+ G Y
Sbjct: 46  LLIIIGIPLFFLELAVGQRIRRGSIGVWNYICP-------RLGGIGYASCLVCFFV-GLY 97

Query: 61  FNGLLS-GVLVLTQHL-------------NGNRYILE-----------------MQHSTG 89
           +N ++   +    +               NG+  ++E                 +  S  
Sbjct: 98  YNVIIGWSIFYFFKSFQYPLPWSECPIVRNGSVAVVEAECEKSSATTYFWYREALDISNS 157

Query: 90  LHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
           + + G + W M LCLL  + I   +M KGI +SGK
Sbjct: 158 ISESGGLNWKMTLCLLVAWSIVGLAMIKGIQSSGK 192

NTT4 (also called XT1) transports the neutral amino acids, proline, glycine, leucine, and alanine, and may play an important role in synaptic transmission. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 589

>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family [General function prediction only]

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 146 TSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
           + GPGLVFIV PA    MP    + ++FF++LL   L S+    E ++ AL D   + R
Sbjct: 281 SQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFGISR 339

Length = 439

>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine transporter GlyT1; solute-binding domain

 Score = 49.9 bits (119), Expect = 3e-07
 Identities = 55/225 (24%), Positives = 86/225 (38%), Gaps = 81/225 (36%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG---KMTRLARMASLTWPPALFID 57
           ML   GIPLF+MEL+ GQF  +G +  W R+ P+FKG    M  ++    + +   + I 
Sbjct: 62  MLVFCGIPLFFMELSFGQFASQGCLGVW-RVSPMFKGVGYGMMVVSTYIGIYYNVVICIA 120

Query: 58  GKYF----------------------NGLLSG-------------VLVLTQHLNGN---- 78
             YF                       G+LS              V  LT+ LN      
Sbjct: 121 FYYFFMSMTRVLPWTYCNNPWNTPDCAGVLSTNRSNATFANMSAVVSNLTELLNRTLKRT 180

Query: 79  --------RYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK------ 124
                   RY+L +  S  + + G ++  +  CL   +L+ +  + +G+ +SGK      
Sbjct: 181 SPSEEYWRRYVLNI--SDDIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGKVVYFTA 238

Query: 125 ----------------------GIKYYLQPNFDAITKSEVSGDTS 147
                                 GI YYL P +D I  ++V GD +
Sbjct: 239 TFPYVVLTILFIRGITLEGAISGIMYYLTPQWDKILDAKVWGDAA 283

GlyT1 is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT1 is encoded by the SLC6A9 gene. GlyT1 is expressed in brain, pancreas, uterus, stomach, spleen, liver, and retina. GlyT1 may play a role in schizophrenia. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 585

>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter transporter 4, and related proteins; solute-binding domain

 Score = 49.1 bits (117), Expect = 6e-07
 Identities = 40/155 (25%), Positives = 69/155 (44%), Gaps = 39/155 (25%)

Query: 1   MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPALFIDGKY 60
           +L V GIPLF++EL++GQ  R+G+I  W  I P       +L  +   +    LF+   Y
Sbjct: 46  LLIVIGIPLFFLELSVGQRIRRGSIGVWNYISP-------KLGGIGFASCIVCLFV-ALY 97

Query: 61  FNGLLS-GVLVLTQHL-------------NGNRYILE-----------------MQHSTG 89
           +N ++   +   +Q               N +   +E                 +  S+ 
Sbjct: 98  YNVIIGWSLFYFSQSFQYPLPWDQCPLVKNASHTFVEPECEKSSATTYYWYREALNISSS 157

Query: 90  LHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
           + + G + W M +CLLA +++   +M KGI +SGK
Sbjct: 158 ISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGK 192

This subgroup includes the solute-binding domain of NTT4 (also called XT1) and SBAT1 (also called B0AT2, v7-3, NTT7-3); both these proteins can transport neutral amino acids. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4 is specifically expressed in the nervous system, in synaptic vesicles of glutamatergic and GABAergic neurons, and may play an important role in synaptic transmission. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 530

>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter 1; solute-binding domain

 Score = 48.4 bits (115), Expect = 9e-07
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 56/201 (27%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA---------SLTWP- 51
           L   G+PLF +E +LGQ+   G +  W ++ P+FKG     A ++          + W  
Sbjct: 89  LIFAGVPLFLLECSLGQYTSIGGLGVW-KLAPMFKGVGLAAAVLSFWLNIYYIVIIAWAI 147

Query: 52  -----------PALFIDGKYFNGLLSGVLVLTQHLNGNRYILEM------QHSTGLHDLG 94
                      P    D  +          +    N    ++E       Q + GL   G
Sbjct: 148 YYLYNSFTTTLPWKSCDNPWNTDRCFSNYSMANTTNMTSAVVEFWERNMHQMTDGLEKPG 207

Query: 95  YIKWDMALCLLAVYLICYFSMWKGISTSGK----------------------------GI 126
            I+W +A+ L   +++ YF +WKG+  +GK                            GI
Sbjct: 208 QIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLFILFFRGVTLPGAKEGI 267

Query: 127 KYYLQPNFDAITKSEVSGDTS 147
            +Y+ PNF  ++ SEV  D +
Sbjct: 268 LFYITPNFSKLSDSEVWLDAA 288

GAT1 transports gamma-aminobutyric acid (GABA). GABA is the main inhibitory neurotransmitter within the mammalian CNS. Human GAT1 is encoded by the SLC6A1 gene. GAT1 is expressed in brain and peripheral nervous system. The antiepileptic drug, Tiagabine, inhibits GAT1. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 598

>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5; solute-binding domain

 Score = 48.2 bits (115), Expect = 1e-06
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 148 GPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSD 198
           GPG  F+ +  AI+  PGS FW+++FF+ LL  GL + FG  + I T L D
Sbjct: 346 GPGFAFLAFSEAISLAPGSAFWAIVFFLALLLAGLSTMFGIMQGIYTPLQD 396

Human NTT5 is encoded by the SLC6A16 gene. NTT5 is expressed in testis, pancreas, and prostate; its expression is predominantly intracellular, indicative of a vesicular location. Its substrates are unknown. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 543

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 19/37 (51%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 1  MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG 37
          ML + G+PLF++E +LGQF   G I+ W R VPL +G
Sbjct: 46 MLALAGLPLFFLECSLGQFASLGPISVW-RAVPLLQG 81

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine transporter ATB0+; solute-binding domain

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 29/41 (70%)

Query: 84  MQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
           +Q S+G+ + G I W +ALCLL  ++I   +++KGI +SGK
Sbjct: 183 LQRSSGMDETGPIVWYLALCLLLAWIIVGAALFKGIKSSGK 223

ATB0+ (also known as the beta-alanine carrier) is a transmembrane transporter with a broad substrate specificity; it can transport non-alpha-amino acids such as beta-alanine with low affinity, and can transport dipolar and cationic amino acids such as leucine and lysine, with a higher affinity. It may have a role in the absorption of essential nutrients and drugs in the distal regions of the human gastrointestinal tract. Human ATB0+ is encoded by the SLC6A14 gene. ATB0+ is expressed in the lung, trachea, salivary gland, mammary gland, stomach, and pituitary gland. ATB0+ may play a role in obesity, and its upregulation may have a pathogenic role in colorectal cancer. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 601

>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid transporter 1; solute-binding domain

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 1  MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG 37
          +L V GIPLF++EL++GQ  R+G+I  W  I P   G
Sbjct: 46 LLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGG 82

SBAT1 (also called B0AT2, v7-3, NTT7-3) is a high-affinity Na(+)-dependent transporter for large neutral amino acids, including leucine, isoleucine, valine, proline and methionine. Human SBAT1 is encoded by the SLC6A15 gene, a susceptibility gene for major depression. SBAT1 is expressed in brain, and may have a role in transporting neurotransmitter precursors into neurons. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 580

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 18/38 (47%), Positives = 25/38 (65%)

Query: 87  STGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK 124
           S G+   G I+W +ALCL   ++I Y S+ KGI +SGK
Sbjct: 193 SAGIEYPGEIRWPLALCLFLAWVIVYASLAKGIKSSGK 230

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

 Score = 38.4 bits (89), Expect = 0.002
 Identities = 15/37 (40%), Positives = 27/37 (72%), Gaps = 1/37 (2%)

Query: 1  MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKG 37
          ML + GIP+F++E++LGQF  +G ++ W + +P  +G
Sbjct: 46 MLALAGIPIFFLEVSLGQFASQGPVSVW-KAIPALQG 81

GlyT2 (also called NET1) is a membrane-bound transporter that re-uptakes glycine from the synaptic cleft. Human GlyT2 is encoded by the SLC6A5 gene. GlyT2 is expressed in brain and spinal cord. GlyT2 may play a role in pain, and in spasticity. This subgroup belongs to the solute carrier 6 (SLC6) transporter family. Length = 606

>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute carrier 6 subfamily; solute-binding domain

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 37/185 (20%), Positives = 64/185 (34%), Gaps = 58/185 (31%)

Query: 2   LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMASLTWPPAL--FIDGK 59
           L   GIPL  +E  LG   R  A   + RI   F+           + W   L  F+   
Sbjct: 47  LLTAGIPLLILEYGLGHKFRGSAPLAFRRINKKFE----------WIGWWQVLVAFVIAT 96

Query: 60  YFNGLLSGVLV-----LTQ--------HLNGNRYILEMQHSTGLHDLGYIKWDMALCLLA 106
           Y+  +++  L       T            G+   L++  S G  DLG   W + + L+ 
Sbjct: 97  YYAVIIAWALSYLFFSFTLAWGDDPEAFFFGD--FLQL--SDGPFDLGGFVWPILIALVL 152

Query: 107 VYLICYFSMWKGIST-----------------------------SGKGIKYYLQPNFDAI 137
           V+LI +F +++G+                               +  G+     P++ A+
Sbjct: 153 VWLIIWFILYRGVKKGIEKANKIFMPLLFVLFLILVIRALTLPGAADGLNALFTPDWSAL 212

Query: 138 TKSEV 142
              +V
Sbjct: 213 LDPKV 217

SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. Length = 480

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	218
COG0733	439	Na+-dependent transporters of the SNF family [Gene	100.0
PF00209	523	SNF: Sodium:neurotransmitter symporter family; Int	100.0
KOG3660|consensus	629		100.0
KOG3659|consensus	629		100.0

>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]

Probab=100.00  E-value=6.9e-45  Score=324.98  Aligned_cols=195  Identities=27%  Similarity=0.386  Sum_probs=172.3

Q ss_pred             EEEehHHHHHHHHHHHhhcCCChhhHHHhhc--ccccchhhHHHHHh---------hhhhhhhhhc---cCccCCCcccC
Q psy594            2 LFVGGIPLFYMELALGQFHRKGAITCWGRIV--PLFKGKMTRLARMA---------SLTWPPALFI---DGKYFNGLLSG   67 (218)
Q Consensus         2 l~liGiPll~~E~~lGq~~~~~~i~af~~l~--p~~~gvG~~~~~~~---------I~gW~l~Y~~---~~~w~~~~c~~   67 (218)
                      ++++|+|++++|+++||++|++++++|+++.  ++|+++||..++++         |.||++.|++   ++.|.++    
T Consensus        51 ~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~----  126 (439)
T COG0733          51 LLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDT----  126 (439)
T ss_pred             HHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC----
Confidence            4678999999999999999999999999998  67999999988877         9999999998   7777632    


Q ss_pred             ccchhHhhhhHHhHhhhccCCCCCCcchhHHHHHHHHHHHHHHhhhhcccccccccc-----------------------
Q psy594           68 VLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK-----------------------  124 (218)
Q Consensus        68 ~~~~~~~~ff~~~vl~~~~s~~~~~~~~~~~~l~~~l~i~w~iv~~gv~~GIe~~~k-----------------------  124 (218)
                        .+...++|.+..     ++   ......++ .++++++++++.+|++|||||.+|                       
T Consensus       127 --~~~~~~~f~~~~-----~~---~~~~~~~~-~~~~~lt~~iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA  195 (439)
T COG0733         127 --GEQFAQLFGQTI-----SN---PGLAVIFH-LLFLVLTALIVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGA  195 (439)
T ss_pred             --hhHHHHHHHHHh-----cC---chHHHHHH-HHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccH
Confidence              234556666553     22   12234455 468999999999999999999999                       


Q ss_pred             --cceeeeecCcccCCCceeee----------------------------------------------------------
Q psy594          125 --GIKYYLQPNFDAITKSEVSG----------------------------------------------------------  144 (218)
Q Consensus       125 --Gl~~~f~pd~~~l~~~~vw~----------------------------------------------------------  144 (218)
                        |++|||+||||++.|+++|.                                                          
T Consensus       196 ~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~  275 (439)
T COG0733         196 MEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFS  275 (439)
T ss_pred             HHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              99999999999999999999                                                          


Q ss_pred             ----ecCCCceehhhHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHhcCCCCcceeeeee
Q psy594          145 ----DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPRDELAGFR  211 (218)
Q Consensus       145 ----~~~G~~L~Fi~~P~~f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~v~~l~d~~~~~R~~a~~~~  211 (218)
                          +++||||+|+++|++|+|||.|++++++||+++.+||+||+++++|+++++++|+++++|+|++++-
T Consensus       276 ~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iSmlE~~va~l~~~~~~~R~~a~~~~  346 (439)
T COG0733         276 FGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFGISRKKATWLI  346 (439)
T ss_pred             hccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHHHH
Confidence                7899999999999999999999999999999999999999999999999999999999999998753

>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses

Probab=100.00  E-value=9.5e-46  Score=343.84  Aligned_cols=202  Identities=37%  Similarity=0.769  Sum_probs=145.0

Q ss_pred             EEEehHHHHHHHHHHHhhcCCChhhHHHhhcccccchhhHHHHHh---------hhhhhhhhhc------------cCcc
Q psy594            2 LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA---------SLTWPPALFI------------DGKY   60 (218)
Q Consensus         2 l~liGiPll~~E~~lGq~~~~~~i~af~~l~p~~~gvG~~~~~~~---------I~gW~l~Y~~------------~~~w   60 (218)
                      ++++|+|++++|+++||++|+|++++|+|++|++||+|+++++.+         +++|+++|++            ++.|
T Consensus        47 ~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~  126 (523)
T PF00209_consen   47 LLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIFKGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSW  126 (523)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHHHTHHHH---HHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999999999999999999998877         8999999998            4567


Q ss_pred             CCCcccC----------------ccchhHhhhhHHhHhhhccCCCCCCcchhHHHHHHHHHHHHHHhhhhcccccccccc
Q psy594           61 FNGLLSG----------------VLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK  124 (218)
Q Consensus        61 ~~~~c~~----------------~~~~~~~~ff~~~vl~~~~s~~~~~~~~~~~~l~~~l~i~w~iv~~gv~~GIe~~~k  124 (218)
                      |+++|.+                +..+++++||++.++++  ++++++.|.++|+++++++++|.++++++.||||+.+|
T Consensus       127 n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ff~~~vl~~--s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~~k  204 (523)
T PF00209_consen  127 NTPNCYDIYSNCNCSNSSSYNFTQRISPAEEFFYREVLQI--SDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESIGK  204 (523)
T ss_dssp             --------------------------------------------------------HHHHHHHHHHHTTTTTTTHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccc--ccccccccchhHHHHHHHHHHHHHHHHheEeccccccc
Confidence            7777852                12367889999999999  88888899999999999999999999999999999999


Q ss_pred             ----------------------------cceeeeecCcccCCCceeee--------------------------------
Q psy594          125 ----------------------------GIKYYLQPNFDAITKSEVSG--------------------------------  144 (218)
Q Consensus       125 ----------------------------Gl~~~f~pd~~~l~~~~vw~--------------------------------  144 (218)
                                                  |++|+++|||++|.|+++|.                                
T Consensus       205 v~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~n~~~  284 (523)
T PF00209_consen  205 VMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKNNIFR  284 (523)
T ss_dssp             HHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS-SHH
T ss_pred             hhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCccccc
Confidence                                        99999999999999999999                                


Q ss_pred             --------------------------------------ecCCCceehhhHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q psy594          145 --------------------------------------DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSF  186 (218)
Q Consensus       145 --------------------------------------~~~G~~L~Fi~~P~~f~~mp~g~~~~~lFF~~l~~agltS~i  186 (218)
                                                            +++||||+|+++|++|++||+|++|+++||++++++|+||++
T Consensus       285 ~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl~S~i  364 (523)
T PF00209_consen  285 DALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGLTSQI  364 (523)
T ss_dssp             HHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHhhhcC
Confidence                                                  358999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhcCCCCcc
Q psy594          187 GGSEAIITALSDGLAMPRD  205 (218)
Q Consensus       187 ~~~E~~v~~l~d~~~~~R~  205 (218)
                      +++|+++++++|+++.+|+
T Consensus       365 ~~~E~iv~~l~d~~~~~~~  383 (523)
T PF00209_consen  365 SMLEVIVSALMDEFPISRK  383 (523)
T ss_dssp             HHHHHHHHHHHHTST----
T ss_pred             CceeceeEeeeecCccchh
Confidence            9999999999999998665

High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....

>KOG3660|consensus

Probab=100.00  E-value=2.1e-43  Score=330.33  Aligned_cols=203  Identities=40%  Similarity=0.784  Sum_probs=182.3

Q ss_pred             EEEehHHHHHHHHHHHhhcCCChhhHHHhhcccccchhhHHHHHh---------hhhhhhhhhc------------cCcc
Q psy594            2 LFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA---------SLTWPPALFI------------DGKY   60 (218)
Q Consensus         2 l~liGiPll~~E~~lGq~~~~~~i~af~~l~p~~~gvG~~~~~~~---------I~gW~l~Y~~------------~~~w   60 (218)
                      ++++|+|++++|+++||++++||+.+|+|++|.+||+|+++++.+         +++|+++|++            +++|
T Consensus        80 l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~w  159 (629)
T KOG3660|consen   80 LFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPW  159 (629)
T ss_pred             HHHhcchHHHHHHHHhhhhcCChHHHHHHhChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChh
Confidence            467899999999999999999999999999999999999999888         9999999998            6788


Q ss_pred             CCCcccC-----------------ccchhHhhhhHHhHhhhccCC--CCCCcchhHHHHHHHHHHHHHHhhhhccccccc
Q psy594           61 FNGLLSG-----------------VLVLTQHLNGNRYILEMQHST--GLHDLGYIKWDMALCLLAVYLICYFSMWKGIST  121 (218)
Q Consensus        61 ~~~~c~~-----------------~~~~~~~~ff~~~vl~~~~s~--~~~~~~~~~~~l~~~l~i~w~iv~~gv~~GIe~  121 (218)
                      |+++|.+                 +..++.++++.+..++.  ++  ++++.|.++|++++|++++|++|++++.||+++
T Consensus       160 nt~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks  237 (629)
T KOG3660|consen  160 NTEYCLDGTSKQNCANLTKLSNALNFNSPVAEFWENRVLSL--SDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKS  237 (629)
T ss_pred             cCCccccccccccccccccccchhhhccchhhhhhhhhccc--ccccccccCCCCChHHHHHHHHHHHHHHHHHhhcccc
Confidence            8888863                 01234566666666555  33  367899999999999999999999999999999


Q ss_pred             ccc----------------------------cceeeeecCcccCCCceeee-----------------------------
Q psy594          122 SGK----------------------------GIKYYLQPNFDAITKSEVSG-----------------------------  144 (218)
Q Consensus       122 ~~k----------------------------Gl~~~f~pd~~~l~~~~vw~-----------------------------  144 (218)
                      .||                            |++||++|||++|.|+++|.                             
T Consensus       238 ~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSynk~~nN  317 (629)
T KOG3660|consen  238 SGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYNKFNNN  317 (629)
T ss_pred             cCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeeeccCCc
Confidence            999                            99999999999999999999                             


Q ss_pred             ------------------------------------------ecCCCceehhhHHHHHhcCCchhHHHHHHHHHHHHHHH
Q psy594          145 ------------------------------------------DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGL  182 (218)
Q Consensus       145 ------------------------------------------~~~G~~L~Fi~~P~~f~~mp~g~~~~~lFF~~l~~agl  182 (218)
                                                                +++||+|+|++||+++++||.+++|+.+||+|++++|+
T Consensus       318 ~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml~~LG~  397 (629)
T KOG3660|consen  318 CYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFMLLLLGL  397 (629)
T ss_pred             ceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHHHHHHh
Confidence                                                      57899999999999999999999999999999999999


Q ss_pred             HhhhHhHHHHHHHHHhcCCCCcce
Q psy594          183 DSSFGGSEAIITALSDGLAMPRDE  206 (218)
Q Consensus       183 tS~i~~~E~~v~~l~d~~~~~R~~  206 (218)
                      +|++.++|++++++.|+|+..|.+
T Consensus       398 ~s~~~~ve~i~t~i~D~Fp~~~~~  421 (629)
T KOG3660|consen  398 DSQFAIVETIVTAIVDEFPRLRNR  421 (629)
T ss_pred             hhHHHHHHHHHHHHHHhccccccc
Confidence            999999999999999999844443

>KOG3659|consensus

Probab=100.00  E-value=1.5e-43  Score=322.74  Aligned_cols=201  Identities=49%  Similarity=0.869  Sum_probs=189.1

Q ss_pred             CEEEehHHHHHHHHHHHhhcCCChhhHHHhhcccccchhhHHHHHh---------hhhhhhhhhc------------cCc
Q psy594            1 MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGKMTRLARMA---------SLTWPPALFI------------DGK   59 (218)
Q Consensus         1 ~l~liGiPll~~E~~lGq~~~~~~i~af~~l~p~~~gvG~~~~~~~---------I~gW~l~Y~~------------~~~   59 (218)
                      |+++.|+|++++|+++||+.|+|++++|+|++|.++|+|+++++++         |++|++||++            +++
T Consensus       123 mli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s  202 (629)
T KOG3659|consen  123 MLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNS  202 (629)
T ss_pred             HHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCc
Confidence            3578899999999999999999999999999999999999999998         9999999998            577


Q ss_pred             cCCCcccC-----------ccchhHhhhhHHhHhhhccCCCCCCcchhHHHHHHHHHHHHHHhhhhcccccccccc----
Q psy594           60 YFNGLLSG-----------VLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGISTSGK----  124 (218)
Q Consensus        60 w~~~~c~~-----------~~~~~~~~ff~~~vl~~~~s~~~~~~~~~~~~l~~~l~i~w~iv~~gv~~GIe~~~k----  124 (218)
                      ||+++|.+           +..+++++||++.+|+++++++++|.|+++|++++|++++|+++++.++||+|++||    
T Consensus       203 ~n~~~C~~~~~s~~~~~~~ek~s~a~ef~~r~~l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kssGKvv~v  282 (629)
T KOG3659|consen  203 WNGPNCFDPTWSKNCDEECEKTSPAQEFWYRKVLGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSSGKVVWV  282 (629)
T ss_pred             ccCCCccCccccccCchhhhccchhHHHHHhhcccccccccccccCCCchHHHHHHHHHHHHHHHHHhccccccceEEee
Confidence            88888873           136788999999999998788899999999999999999999999999999999999    


Q ss_pred             ------------------------cceeeeecCcccCCCceeee------------------------------------
Q psy594          125 ------------------------GIKYYLQPNFDAITKSEVSG------------------------------------  144 (218)
Q Consensus       125 ------------------------Gl~~~f~pd~~~l~~~~vw~------------------------------------  144 (218)
                                              |+.||++||++|+.++.+|+                                    
T Consensus       283 tallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc~rDAll  362 (629)
T KOG3659|consen  283 TALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNCYRDALL  362 (629)
T ss_pred             ehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccchhhhhHH
Confidence                                    89999999999999999999                                    


Q ss_pred             --------------------------------------ecCCCceehhhHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Q psy594          145 --------------------------------------DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSF  186 (218)
Q Consensus       145 --------------------------------------~~~G~~L~Fi~~P~~f~~mp~g~~~~~lFF~~l~~agltS~i  186 (218)
                                                            ..+||||+|++||+++++||.+.+|+++||+||..+|++|++
T Consensus       363 ~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~lgl~s~~  442 (629)
T KOG3659|consen  363 TSIINCLTSFLSGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTLGLDSMF  442 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHHhhHhhh
Confidence                                                  457999999999999999999999999999999999999999


Q ss_pred             HhHHHHHHHHHhcCC
Q psy594          187 GGSEAIITALSDGLA  201 (218)
Q Consensus       187 ~~~E~~v~~l~d~~~  201 (218)
                      +-+|.+++.+.|++.
T Consensus       443 g~~e~iit~l~d~~~  457 (629)
T KOG3659|consen  443 GGIEAIITPLLDEFY  457 (629)
T ss_pred             hhHHHHhccccchhh
Confidence            999999999999983

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	218
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Length = 519

 Score = 58.5 bits (142), Expect = 2e-10
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 145 DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
                 L FI  PA  +   G  F   ++F +L   GL SS    + +I  L D L + R
Sbjct: 316 KAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSR 375

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.1 bits (90), Expect = 7e-04
 Identities = 41/231 (17%), Positives = 66/231 (28%), Gaps = 76/231 (32%)

Query: 3   FVGGIPLFYMELALGQFHRKGAI-----TCWGRIVPLF-----------------KGKMT 40
               I  F+  L L   +    +         +I P +                 + ++ 
Sbjct: 180 MDFKI--FW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 41  RLARMASLTWPPALFI-DG-------KYFNGLLSGVLVLTQH------LNGNRY--ILEM 84
           RL  + S  +   L +            FN L   +L+ T+       L+      I   
Sbjct: 236 RL--LKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 85  QHSTGLHDLGYIKWDMALCLLAVYLICYFS-----MWKG----ISTSGKGIK-------Y 128
            HS  L        D    LL  YL C        +       +S   + I+        
Sbjct: 293 HHSMTLTP------DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346

Query: 129 YLQPNFDAITKS-EVSGDTSGPGLV------FIVYP--AAIATMPGSIFWS 170
           +   N D +T   E S +   P           V+P  A I T+  S+ W 
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	218
2a65_A	519	Leutaa, Na(+):neurotransmitter symporter (SNF fami	100.0

>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...

Probab=100.00  E-value=1.2e-44  Score=333.70  Aligned_cols=205  Identities=20%  Similarity=0.243  Sum_probs=174.7

Q ss_pred             EEEehHHHHHHHHHHHh----hcCCChhhHHHhhccc--ccchhhHHHHHh---------hhhhhhhhhc-----cCc--
Q psy594            2 LFVGGIPLFYMELALGQ----FHRKGAITCWGRIVPL--FKGKMTRLARMA---------SLTWPPALFI-----DGK--   59 (218)
Q Consensus         2 l~liGiPll~~E~~lGq----~~~~~~i~af~~l~p~--~~gvG~~~~~~~---------I~gW~l~Y~~-----~~~--   59 (218)
                      ++++|+|++++|+++||    ++|+|++++|++++|+  |||+|+++++++         |+||+++|++     ..+  
T Consensus        51 l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~  130 (519)
T 2a65_A           51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP  130 (519)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            46789999999999999    8999999999999976  999999999887         8999999998     334  


Q ss_pred             cCCCc-ccCccchhHhhhhHHhHhhhccCCCCCCcchhHHHHHHHHHHHHHHhhhhccccc----ccccc----------
Q psy594           60 YFNGL-LSGVLVLTQHLNGNRYILEMQHSTGLHDLGYIKWDMALCLLAVYLICYFSMWKGI----STSGK----------  124 (218)
Q Consensus        60 w~~~~-c~~~~~~~~~~ff~~~vl~~~~s~~~~~~~~~~~~l~~~l~i~w~iv~~gv~~GI----e~~~k----------  124 (218)
                      |++++ | ++..++.++||++ +++.  ++++++.|.++|++++|++++|++++.++.||+    ||.+|          
T Consensus       131 w~~~~~~-~~~~~~~~~~f~~-~l~~--~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vll  206 (519)
T 2a65_A          131 PPNATDP-DSILRPFKEFLYS-YIGV--PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILA  206 (519)
T ss_dssp             CC--CCH-HHHHHHHHHHHHH-HHTC--CSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHH
T ss_pred             ccccCCc-ccccCcHHHHHHH-HHCC--CCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            76431 1 0112345578866 4665  677788899999999999999988888887776    44444          


Q ss_pred             -------------------cceeeeecCcccCCCceeee-----------------------------------------
Q psy594          125 -------------------GIKYYLQPNFDAITKSEVSG-----------------------------------------  144 (218)
Q Consensus       125 -------------------Gl~~~f~pd~~~l~~~~vw~-----------------------------------------  144 (218)
                                         |++|||+|||++|.|+++|.                                         
T Consensus       207 iiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n  286 (519)
T 2a65_A          207 VFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLN  286 (519)
T ss_dssp             HHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHhhHHHHHHHH
Confidence                               58999999999999999999                                         


Q ss_pred             ----------------------e------cCC-CceehhhHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhHhHHHHHHH
Q psy594          145 ----------------------D------TSG-PGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITA  195 (218)
Q Consensus       145 ----------------------~------~~G-~~L~Fi~~P~~f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~v~~  195 (218)
                                            +      ++| |||+|++||++|++||+|++|+++||+|+++||+||+++++|+++++
T Consensus       287 ~~~sllaG~~IF~~lgf~a~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~vt~  366 (519)
T 2a65_A          287 EKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAF  366 (519)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHhhHhHHH
Confidence                                  3      468 99999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCcceeeee
Q psy594          196 LSDGLAMPRDELAGF  210 (218)
Q Consensus       196 l~d~~~~~R~~a~~~  210 (218)
                      ++|+++++|+|++..
T Consensus       367 l~D~~~~~R~~~~~~  381 (519)
T 2a65_A          367 LEDELKLSRKHAVLW  381 (519)
T ss_dssp             HHHTSCCCHHHHHHH
T ss_pred             HHHhhCCcHHHHHHH
Confidence            999999999998653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	218
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	3e-05
d2a65a1	509	f.54.1.1 (A:5-513) Na(+):neurotransmitter symporte	3e-04

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 9/38 (23%), Positives = 15/38 (39%)

Query: 1  MLFVGGIPLFYMELALGQFHRKGAITCWGRIVPLFKGK 38
             + GIPL ++E A+G++           I  L    
Sbjct: 46 AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRN 83

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Length = 509

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

 Score = 39.0 bits (90), Expect = 3e-04
 Identities = 18/60 (30%), Positives = 25/60 (41%)

Query: 145 DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDGLAMPR 204
                 L FI  PA  +   G  F   ++F +L   GL SS    + +I  L D L + R
Sbjct: 312 KAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSR 371

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	218
d2a65a1	509	Na(+):neurotransmitter symporter homologue LeuT {A	100.0

>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}

class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=3e-40  Score=302.34  Aligned_cols=208  Identities=19%  Similarity=0.223  Sum_probs=171.2

Q ss_pred             EEEehHHHHHHHHHHHhhcCCChhhHHHhh------cccccchhhHHHHHh---------hhhhhhhhhc-----cCccC
Q psy594            2 LFVGGIPLFYMELALGQFHRKGAITCWGRI------VPLFKGKMTRLARMA---------SLTWPPALFI-----DGKYF   61 (218)
Q Consensus         2 l~liGiPll~~E~~lGq~~~~~~i~af~~l------~p~~~gvG~~~~~~~---------I~gW~l~Y~~-----~~~w~   61 (218)
                      ++++|+|++++|+++||++|++++++|+++      +|.+||+|+++++.+         +.+|+++|++     ..+|+
T Consensus        47 l~l~gvPll~lE~~lGq~~~~g~i~~~~~i~~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~s~~~~lp~~  126 (509)
T d2a65a1          47 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP  126 (509)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCC
Confidence            467899999999999999999999999887      466899999999887         8899999988     34554


Q ss_pred             CCccc--CccchhHhhhhHHhHhhhccCCCCCCcch-hHHHHHHHHHHHHHHhhhhcccccccccc--------------
Q psy594           62 NGLLS--GVLVLTQHLNGNRYILEMQHSTGLHDLGY-IKWDMALCLLAVYLICYFSMWKGISTSGK--------------  124 (218)
Q Consensus        62 ~~~c~--~~~~~~~~~ff~~~vl~~~~s~~~~~~~~-~~~~l~~~l~i~w~iv~~gv~~GIe~~~k--------------  124 (218)
                      .++..  ++..++.++|+++.....+.+++..+... ....++++++++|.++++|+.||+|+.+|              
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~gi~kGi~~~~kv~~~~l~~~~~~l~  206 (509)
T d2a65a1         127 PPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLV  206 (509)
T ss_dssp             CC--CCHHHHHHHHHHHHHHHHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCccccccchHHHHHhhhccccCCCccccchHHHHHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHH
Confidence            32211  11245567787776543322222222222 23344567889999999999999999999              


Q ss_pred             ---------------cceeeeecCcccCCCceeee---------------------------------------------
Q psy594          125 ---------------GIKYYLQPNFDAITKSEVSG---------------------------------------------  144 (218)
Q Consensus       125 ---------------Gl~~~f~pd~~~l~~~~vw~---------------------------------------------  144 (218)
                                     |++|+++|||++|.++++|.                                             
T Consensus       207 i~~~~l~~~~gga~~gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~s  286 (509)
T d2a65a1         207 IRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAE  286 (509)
T ss_dssp             HHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHH
T ss_pred             HHhhhcccCCCcHHHHhhhccCCCHHHhcChHHHHHHHHHHhhhhcccCCceeeehhhccchhhhcccceEEEeccccee
Confidence                           88999999999999999999                                             


Q ss_pred             -------------------------ecCCCceehhhHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhHhHHHHHHHHHhc
Q psy594          145 -------------------------DTSGPGLVFIVYPAAIATMPGSIFWSLIFFMMLLTLGLDSSFGGSEAIITALSDG  199 (218)
Q Consensus       145 -------------------------~~~G~~L~Fi~~P~~f~~mp~g~~~~~lFF~~l~~agltS~i~~~E~~v~~l~d~  199 (218)
                                               +.+||+|+|+++|+++++||+|++|+++||+|++++|+||+++++|++++.++|+
T Consensus       287 i~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~L~Fv~~P~~fs~~~~~~~~~~lFF~~l~~~gl~s~i~~~e~~v~~l~d~  366 (509)
T d2a65a1         287 VILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDE  366 (509)
T ss_dssp             HTTHHHHHHHHHHHHHCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             eccccchhhhhheeeeccccccccccccCCCchhhhhHHHhhcCCcchhHHHHHHHHHHHHHHHHHhccccchhHHHHHh
Confidence                                     4679999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeee
Q psy594          200 LAMPRDELAG  209 (218)
Q Consensus       200 ~~~~R~~a~~  209 (218)
                      ++.+|||++.
T Consensus       367 ~~~~r~~~~~  376 (509)
T d2a65a1         367 LKLSRKHAVL  376 (509)
T ss_dssp             SCCCHHHHHH
T ss_pred             cCCchhhhhh
Confidence            9999988654