Psyllid ID: psy5989

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220
Protein Sequence
MSGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTFH
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccEEEEEEEcccHHHHcccHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccEEEEEcccc
Coil and Loop (DISEMBL)
msgdgdepqegavvddSQKAYQQAFEIskskmqpthpirlglaLNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFflmndpefsplfpcslavVEDSQKAYQEAFDIakskmqpthpirlglaLNFSVFYYEIINSPARACHLAKQVKyscigasrdtkRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTFH
Flexible Loop (DISEMBL)
msgdgdepqegavvddsqKAYQQAFEiskskmqpthPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHtmsssgekeeLVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTFH
Low Complexity Region (SEG)
MSGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTFH
Disordered region (IsUnstruct)
***********************************HPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHT******************************KAVTETGVEYGIY*****
Disordered Region (DISOPRED)
******E***************************THPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSG***********************************GIY*QT**
Disordered Region (DISEMBL)
**************DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMS***********AKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTFH
Disordered Region (DISPRO)
*****DEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRAK********DDMAAAMKAVTETGVEYGIYSQTF*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	220	2.2.26 [Sep-21-2011]
Q2F637	247	14-3-3 protein zeta OS=Bo	N/A	N/A	0.218	0.194	0.927	2e-24
Q1HR36	248	14-3-3 protein zeta OS=Ae	N/A	N/A	0.254	0.225	0.910	3e-24
P29310	248	14-3-3 protein zeta OS=Dr	yes	N/A	0.254	0.225	0.892	6e-24
Q26537	214	14-3-3 protein homolog 2	N/A	N/A	0.563	0.579	0.458	3e-22
Q8AVQ3	244	14-3-3 protein beta/alpha	N/A	N/A	0.268	0.241	0.819	3e-22
P41932	248	14-3-3-like protein 1 OS=	no	N/A	0.25	0.221	0.854	4e-22
Q5R651	245	14-3-3 protein zeta/delta	yes	N/A	0.268	0.240	0.770	1e-21
P63104	245	14-3-3 protein zeta/delta	yes	N/A	0.268	0.240	0.770	1e-21
P63103	245	14-3-3 protein zeta/delta	yes	N/A	0.268	0.240	0.770	1e-21
Q20655	248	14-3-3-like protein 2 OS=	no	N/A	0.277	0.245	0.723	1e-21

>sp|Q2F637|1433Z_BOMMO 14-3-3 protein zeta OS=Bombyx mori GN=14-3-3zeta PE=2 SV=2

 Score =  112 bits (281), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/55 (92%), Positives = 54/55 (98%)

Query: 12  AVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
           +VV+DSQKAYQ AFEISK+KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ
Sbjct: 142 SVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 196

Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner.
Bombyx mori (taxid: 7091)

>sp|Q1HR36|1433Z_AEDAE 14-3-3 protein zeta OS=Aedes aegypti GN=14-3-3zeta PE=2 SV=1

 Score =  111 bits (278), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/56 (91%), Positives = 51/56 (91%)

Query: 11  GAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
             VVDDSQ AYQ AFEISK KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ
Sbjct: 142 NTVVDDSQAAYQDAFEISKGKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 197

Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner.

Aedes aegypti (taxid: 7159)

>sp|P29310|1433Z_DROME 14-3-3 protein zeta OS=Drosophila melanogaster GN=14-3-3zeta PE=1 SV=1

 Score =  110 bits (276), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/56 (89%), Positives = 51/56 (91%)

Query: 11  GAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
             VVDDSQ AYQ AF+ISK KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ
Sbjct: 142 NTVVDDSQTAYQDAFDISKGKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 197

Required in Raf-dependent cell proliferation and photoreceptor differentiation during eye development. Acts upstream of Raf and downstream of Ras, and is essential for viability. Acts as a negative regulator by decreasing its voltage sensitivity. Inhibits yki activity by restricting its nuclear localization.

Drosophila melanogaster (taxid: 7227)

>sp|Q26537|14332_SCHMA 14-3-3 protein homolog 2 (Fragment) OS=Schistosoma mansoni PE=2 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 60/131 (45%), Positives = 77/131 (58%), Gaps = 7/131 (5%)

Query: 22  QQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND 81
           +Q  E S+ K Q     R  +        +E+L   DK   + K   A    FY  +  D
Sbjct: 35  EQKTEGSERKQQMAKDYREKIEKELKDICHEVLTLLDKFL-IPKATTAESKVFYLKMKGD 93

Query: 82  PEFSPLFPCSLA-----VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN 136
             +  L   +       V+E+SQ+AY +AFDIAK++MQPTHPIRLGLALNFSVFYYEI+N
Sbjct: 94  Y-YRYLAEVATGDERQKVIEESQRAYNDAFDIAKNQMQPTHPIRLGLALNFSVFYYEILN 152

Query: 137 SPARACHLAKQ 147
           +P RACHLAKQ
Sbjct: 153 APDRACHLAKQ 163

Schistosoma mansoni (taxid: 6183)

>sp|Q8AVQ3|143BB_XENLA 14-3-3 protein beta/alpha-B OS=Xenopus laevis GN=ywhab-b PE=2 SV=1

 Score =  105 bits (262), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/61 (81%), Positives = 54/61 (88%), Gaps = 2/61 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD  QE   V +SQ+AYQ+AFEISKS+MQPTHPIRLGLALNFSVFYYEILNSPDKAC LA
Sbjct: 135 GDSKQE--TVANSQQAYQEAFEISKSEMQPTHPIRLGLALNFSVFYYEILNSPDKACSLA 192

Query: 65  K 65
           K
Sbjct: 193 K 193

Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner.

Xenopus laevis (taxid: 8355)

>sp|P41932|14331_CAEEL 14-3-3-like protein 1 OS=Caenorhabditis elegans GN=par-5 PE=1 SV=2

 Score =  104 bits (260), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/55 (85%), Positives = 49/55 (89%)

Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           AVVE SQKAYQEA DIAK KMQPTHPIRLGLALNFSVFYYEI+N+P  AC LAKQ
Sbjct: 141 AVVEKSQKAYQEALDIAKDKMQPTHPIRLGLALNFSVFYYEILNTPEHACQLAKQ 195

Caenorhabditis elegans (taxid: 6239)

>sp|Q5R651|1433Z_PONAB 14-3-3 protein zeta/delta OS=Pongo abelii GN=YWHAZ PE=2 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 135 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192

Query: 65  K 65
           K
Sbjct: 193 K 193

Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner.

Pongo abelii (taxid: 9601)

>sp|P63104|1433Z_HUMAN 14-3-3 protein zeta/delta OS=Homo sapiens GN=YWHAZ PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 135 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192

Query: 65  K 65
           K
Sbjct: 193 K 193

Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner.

Homo sapiens (taxid: 9606)

>sp|P63103|1433Z_BOVIN 14-3-3 protein zeta/delta OS=Bos taurus GN=YWHAZ PE=1 SV=1

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 135 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192

Query: 65  K 65
           K
Sbjct: 193 K 193

Adapter protein implicated in the regulation of a large spectrum of both general and specialized signaling pathways. Binds to a large number of partners, usually by recognition of a phosphoserine or phosphothreonine motif. Binding generally results in the modulation of the activity of the binding partner. Activates the ADP-ribosyltransferase (exoS) activity of bacterial origin.

Bos taurus (taxid: 9913)

>sp|Q20655|14332_CAEEL 14-3-3-like protein 2 OS=Caenorhabditis elegans GN=ftt-2 PE=1 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 47/65 (72%), Positives = 56/65 (86%), Gaps = 4/65 (6%)

Query: 2   SGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 61
           SGD       +VV+ SQ++YQ+AF+I+K KMQPTHPIRLGLALNFSVF+YEILN+PDKAC
Sbjct: 136 SGD----DRNSVVEKSQQSYQEAFDIAKDKMQPTHPIRLGLALNFSVFFYEILNAPDKAC 191

Query: 62  QLAKQ 66
           QLAKQ
Sbjct: 192 QLAKQ 196

Required for extension of life-span by sir-2.1.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
270014557	314	hypothetical protein TcasGA2_TC004590 [T	0.604	0.423	0.802	5e-56
307186410	308	14-3-3 protein zeta [Camponotus floridan	0.531	0.379	0.788	1e-54
345479702	262	PREDICTED: 14-3-3 protein zeta-like [Nas	0.531	0.446	0.781	2e-53
307207600	186	14-3-3 protein zeta [Harpegnathos saltat	0.531	0.629	0.781	1e-52
357628813	253	hypothetical protein KGM_17373 [Danaus p	0.518	0.450	0.766	5e-52
170580060	331	14-3-3-like protein 2 [Brugia malayi] gi	0.622	0.413	0.541	4e-36
365266852	247	14-3-3 zeta [Bombus terrestris] gi|36526	0.563	0.502	0.541	1e-25
365266873	247	14-3-3 zeta [Megachile rotundata]	0.563	0.502	0.541	1e-25
365266863	247	14-3-3 zeta [Acromyrmex echinatior]	0.563	0.502	0.526	5e-25
365266882	247	14-3-3 zeta [Atta cephalotes]	0.563	0.502	0.526	5e-25

>gi|270014557|gb|EFA11005.1| hypothetical protein TcasGA2_TC004590 [Tribolium castaneum]

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 116/137 (84%), Gaps = 4/137 (2%)

Query: 11  GAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH 70
            AVVD SQKAYQ AFEISK+KM PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ+C  
Sbjct: 131 NAVVDYSQKAYQDAFEISKAKMTPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQIC-- 188

Query: 71  YFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVF 130
             CFYF + +   F  +    + VVEDSQKAYQEAFDIAKSKMQ THPIRLGLALNFSVF
Sbjct: 189 --CFYFEVCSTDSFIIVRFLLIEVVEDSQKAYQEAFDIAKSKMQSTHPIRLGLALNFSVF 246

Query: 131 YYEIINSPARACHLAKQ 147
           YYEIINSPARACHLAKQ
Sbjct: 247 YYEIINSPARACHLAKQ 263

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186410|gb|EFN72044.1| 14-3-3 protein zeta [Camponotus floridanus]

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 108/137 (78%), Positives = 110/137 (80%), Gaps = 20/137 (14%)

Query: 11  GAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH 70
             VVDDSQKAYQ AFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ   H
Sbjct: 141 NTVVDDSQKAYQDAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQADLH 200

Query: 71  YFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVF 130
           +                     AVVEDSQKAYQEAFDIAK+KMQPTHPIRLGLALNFSVF
Sbjct: 201 F--------------------AAVVEDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSVF 240

Query: 131 YYEIINSPARACHLAKQ 147
           YYEIINSPARACHLAKQ
Sbjct: 241 YYEIINSPARACHLAKQ 257

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479702|ref|XP_001600046.2| PREDICTED: 14-3-3 protein zeta-like [Nasonia vitripennis]

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 110/137 (80%), Gaps = 20/137 (14%)

Query: 11  GAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH 70
            AVV+DSQKAYQ AFEISK+KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV   
Sbjct: 141 NAVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVHTR 200

Query: 71  YFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVF 130
                                 AVVEDSQKAYQEAFDIAK+KMQPTHPIRLGLALNFSVF
Sbjct: 201 I--------------------AAVVEDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSVF 240

Query: 131 YYEIINSPARACHLAKQ 147
           YYEIINSPARACHLAKQ
Sbjct: 241 YYEIINSPARACHLAKQ 257

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207600|gb|EFN85264.1| 14-3-3 protein zeta [Harpegnathos saltator]

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 107/137 (78%), Positives = 109/137 (79%), Gaps = 20/137 (14%)

Query: 11  GAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH 70
             VV+DSQKAYQ AFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ    
Sbjct: 19  NTVVEDSQKAYQDAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ---- 74

Query: 71  YFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVF 130
                              C  AVVEDSQKAYQEAFDIAK+KMQPTHPIRLGLALNFSVF
Sbjct: 75  ----------------RLICIAAVVEDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSVF 118

Query: 131 YYEIINSPARACHLAKQ 147
           YYEIINSPARACHLAKQ
Sbjct: 119 YYEIINSPARACHLAKQ 135

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628813|gb|EHJ77988.1| hypothetical protein KGM_17373 [Danaus plexippus]

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 105/137 (76%), Positives = 110/137 (80%), Gaps = 23/137 (16%)

Query: 11  GAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH 70
            +VV+DSQKAYQ AFEISK+KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV   
Sbjct: 89  NSVVEDSQKAYQDAFEISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVI-- 146

Query: 71  YFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVF 130
                                + VVEDSQKAYQEAFDIAK+KMQPTHPIRLGLALNFSVF
Sbjct: 147 ---------------------MTVVEDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSVF 185

Query: 131 YYEIINSPARACHLAKQ 147
           YYEIINSPARACHLAKQ
Sbjct: 186 YYEIINSPARACHLAKQ 202

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170580060|ref|XP_001895095.1| 14-3-3-like protein 2 [Brugia malayi] gi|158598059|gb|EDP36044.1| 14-3-3-like protein 2, putative [Brugia malayi]

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 79/146 (54%), Positives = 101/146 (69%), Gaps = 9/146 (6%)

Query: 2   SGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKAC 61
           SGD  E     VV  S+++Y++AF+I+   M PTHPIRLGLALNFSVFY+EILN+ + AC
Sbjct: 135 SGDDRE----MVVARSEQSYREAFDIANDTMHPTHPIRLGLALNFSVFYHEILNASEMAC 190

Query: 62  QLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRL 121
           + AKQV    F  Y++  N       F    AV +  QKAY EA +IAK+++  THP+RL
Sbjct: 191 RFAKQVREEGFILYYYHSN-----GWFMFVSAVADAGQKAYSEALEIAKAQLSTTHPVRL 245

Query: 122 GLALNFSVFYYEIINSPARACHLAKQ 147
           GLALN+SVF+YEI +SP RAC LAKQ
Sbjct: 246 GLALNYSVFFYEISSSPDRACQLAKQ 271

Source: Brugia malayi

Species: Brugia malayi

Genus: Brugia

Family: Onchocercidae

Order: Spirurida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|365266852|gb|AEW70334.1| 14-3-3 zeta [Bombus terrestris] gi|365266856|gb|AEW70337.1| 14-3-3 zeta [Bombus impatiens] gi|365266860|gb|AEW70340.1| 14-3-3 zeta [Apis florea]

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 79/131 (60%), Gaps = 7/131 (5%)

Query: 22  QQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND 81
           +Q  E S+ K Q     R  +        Y++L   DK   + K   A    FY  +  D
Sbjct: 68  EQKTEGSERKQQMAKEYREKVEKELREICYDVLGLLDKYL-IPKASNAESKVFYLKMKGD 126

Query: 82  -----PEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN 136
                 E +       AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN
Sbjct: 127 YYRYLAEVAT-GETRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN 185

Query: 137 SPARACHLAKQ 147
           SPARACHLAKQ
Sbjct: 186 SPARACHLAKQ 196

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|365266873|gb|AEW70349.1| 14-3-3 zeta [Megachile rotundata]

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 79/131 (60%), Gaps = 7/131 (5%)

Query: 22  QQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND 81
           +Q  E S+ K Q     R  +        Y++L   DK   + K   A    FY  +  D
Sbjct: 68  EQKTEGSERKQQMAKEYREKVEKELREICYDVLGLLDKYL-IPKASNAESKVFYLKMKGD 126

Query: 82  -----PEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN 136
                 E +       AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN
Sbjct: 127 YYRYLAEVAT-GETRNAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN 185

Query: 137 SPARACHLAKQ 147
           SPARACHLAKQ
Sbjct: 186 SPARACHLAKQ 196

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|365266863|gb|AEW70342.1| 14-3-3 zeta [Acromyrmex echinatior]

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 80/131 (61%), Gaps = 7/131 (5%)

Query: 22  QQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND 81
           +Q  E S+ K Q     R  +        Y++L   DK   ++K   A    FY  +  D
Sbjct: 68  EQKTEGSERKQQMAKEYREKVEKELREICYDVLGLLDKFL-ISKASNAESKVFYLKMKGD 126

Query: 82  PEFSPLFPCSLA-----VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN 136
             +  L   +       VVEDSQKAYQEAFDIAK+KMQPTHPIRLGLALNFSVFYYEIIN
Sbjct: 127 Y-YRYLAEVATGETRNTVVEDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSVFYYEIIN 185

Query: 137 SPARACHLAKQ 147
           SPARACHLAKQ
Sbjct: 186 SPARACHLAKQ 196

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|365266882|gb|AEW70355.1| 14-3-3 zeta [Atta cephalotes]

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 69/131 (52%), Positives = 80/131 (61%), Gaps = 7/131 (5%)

Query: 22  QQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND 81
           +Q  E S+ K Q     R  +        Y++L   DK   ++K   A    FY  +  D
Sbjct: 68  EQKTEGSERKQQMAKEYREKVEKELREICYDVLGLLDKFL-ISKASNAESKVFYLKMKGD 126

Query: 82  PEFSPLFPCSLA-----VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIIN 136
             +  L   +       VVEDSQKAYQEAFDIAK+KMQPTHPIRLGLALNFSVFYYEIIN
Sbjct: 127 Y-YRYLAEVATGETRNTVVEDSQKAYQEAFDIAKAKMQPTHPIRLGLALNFSVFYYEIIN 185

Query: 137 SPARACHLAKQ 147
           SPARACHLAKQ
Sbjct: 186 SPARACHLAKQ 196

Source: Atta cephalotes

Species: Atta cephalotes

Genus: Atta

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	220
FB|FBgn0004907	248	14-3-3zeta "14-3-3zeta" [Droso	0.245	0.217	0.925	2.6e-22
WB|WBGene00003920	248	par-5 [Caenorhabditis elegans	0.613	0.544	0.457	8e-21
UNIPROTKB|P41932	248	par-5 "14-3-3-like protein 1"	0.613	0.544	0.457	8e-21
UNIPROTKB|P63103	245	YWHAZ "14-3-3 protein zeta/del	0.268	0.240	0.786	8e-21
UNIPROTKB|F1PBL1	245	YWHAZ "Uncharacterized protein	0.268	0.240	0.786	8e-21
UNIPROTKB|P63104	245	YWHAZ "14-3-3 protein zeta/del	0.268	0.240	0.786	8e-21
UNIPROTKB|F2Z558	248	YWHAZ "Uncharacterized protein	0.268	0.237	0.786	8e-21
MGI|MGI:109484	245	Ywhaz "tyrosine 3-monooxygenas	0.268	0.240	0.786	8e-21
RGD|3980	245	Ywhaz "tyrosine 3-monooxygenas	0.268	0.240	0.786	8e-21
UNIPROTKB|E1BDS9	123	LOC100140254 "Uncharacterized	0.268	0.479	0.786	8e-21

FB|FBgn0004907 14-3-3zeta "14-3-3zeta" [Drosophila melanogaster (taxid:7227)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 50/54 (92%), Positives = 51/54 (94%)

Query:    13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
             VVDDSQ AYQ AF+ISK KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ
Sbjct:   144 VVDDSQTAYQDAFDISKGKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 197

GO:0007265 "Ras protein signal transduction" evidence=ISS;NAS

GO:0006588 "activation of tryptophan 5-monooxygenase activity" evidence=ISS

GO:0008426 "protein kinase C inhibitor activity" evidence=ISS;NAS

GO:0016483 "tryptophan hydroxylase activator activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0001751 "compound eye photoreceptor cell differentiation" evidence=NAS

GO:0008283 "cell proliferation" evidence=NAS

GO:0008355 "olfactory learning" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IMP

GO:0045448 "mitotic cell cycle, embryonic" evidence=IMP

GO:0005634 "nucleus" evidence=NAS

GO:0007611 "learning or memory" evidence=NAS;IMP

GO:0045172 "germline ring canal" evidence=IDA

GO:0007294 "germarium-derived oocyte fate determination" evidence=IGI

GO:0008103 "oocyte microtubule cytoskeleton polarization" evidence=IGI

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0050821 "protein stabilization" evidence=IMP;IDA

GO:0006457 "protein folding" evidence=IDA;IMP

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IPI

WB|WBGene00003920 par-5 [Caenorhabditis elegans (taxid:6239)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 65/142 (45%), Positives = 79/142 (55%)

Query:    22 QQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND 81
             +Q  E S+ K Q     R+ +    +    ++L   D+   + K   A    FY  +  D
Sbjct:    68 EQKTEGSEKKQQLAKEYRVKVEQELNDICQDVLKLLDEFL-IVKAGAAESKVFYLKMKGD 126

Query:    82 PEFSPLFPCS----LAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINS 137
               +  L   +     AVVE SQKAYQEA DIAK KMQPTHPIRLGLALNFSVFYYEI+N+
Sbjct:   127 -YYRYLAEVASEDRAAVVEKSQKAYQEALDIAKDKMQPTHPIRLGLALNFSVFYYEILNT 185

Query:   138 PARACHLAKQVKYSCIGASRDT 159
             P  AC LAKQ     I A  DT
Sbjct:   186 PEHACQLAKQAFDDAI-AELDT 206

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0043053 "dauer entry" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0035188 "hatching" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0030590 "first cell cycle pseudocleavage" evidence=IMP

GO:0035046 "pronuclear migration" evidence=IMP

GO:0000132 "establishment of mitotic spindle orientation" evidence=IMP

GO:0010070 "zygote asymmetric cell division" evidence=IMP

GO:0007346 "regulation of mitotic cell cycle" evidence=IMP

GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=IMP

GO:0009949 "polarity specification of anterior/posterior axis" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

GO:0001708 "cell fate specification" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|P41932 par-5 "14-3-3-like protein 1" [Caenorhabditis elegans (taxid:6239)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 65/142 (45%), Positives = 79/142 (55%)

Query:    22 QQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND 81
             +Q  E S+ K Q     R+ +    +    ++L   D+   + K   A    FY  +  D
Sbjct:    68 EQKTEGSEKKQQLAKEYRVKVEQELNDICQDVLKLLDEFL-IVKAGAAESKVFYLKMKGD 126

Query:    82 PEFSPLFPCS----LAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINS 137
               +  L   +     AVVE SQKAYQEA DIAK KMQPTHPIRLGLALNFSVFYYEI+N+
Sbjct:   127 -YYRYLAEVASEDRAAVVEKSQKAYQEALDIAKDKMQPTHPIRLGLALNFSVFYYEILNT 185

Query:   138 PARACHLAKQVKYSCIGASRDT 159
             P  AC LAKQ     I A  DT
Sbjct:   186 PEHACQLAKQAFDDAI-AELDT 206

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P63103 YWHAZ "14-3-3 protein zeta/delta" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query:     5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
             GD+ ++G +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct:   135 GDD-KKG-IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192

Query:    65 K 65
             K
Sbjct:   193 K 193

GO:0042470 "melanosome" evidence=IEA

GO:0010941 "regulation of cell death" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0006605 "protein targeting" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

UNIPROTKB|F1PBL1 YWHAZ "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query:     5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
             GD+ ++G +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct:   135 GDD-KKG-IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192

Query:    65 K 65
             K
Sbjct:   193 K 193

GO:0019904 "protein domain specific binding" evidence=IEA

UNIPROTKB|P63104 YWHAZ "14-3-3 protein zeta/delta" [Homo sapiens (taxid:9606)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query:     5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
             GD+ ++G +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct:   135 GDD-KKG-IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192

Query:    65 K 65
             K
Sbjct:   193 K 193

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0002553 "histamine secretion by mast cell" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=IEA

GO:0014069 "postsynaptic density" evidence=IEA

GO:0031252 "cell leading edge" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0007165 "signal transduction" evidence=TAS

GO:0043066 "negative regulation of apoptotic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

UNIPROTKB|F2Z558 YWHAZ "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query:     5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
             GD+ ++G +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct:   138 GDD-KKG-IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 195

Query:    65 K 65
             K
Sbjct:   196 K 196

GO:0019904 "protein domain specific binding" evidence=IEA

MGI|MGI:109484 Ywhaz "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide" [Mus musculus (taxid:10090)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query:     5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
             GD+ ++G +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct:   135 GDD-KKG-IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192

Query:    65 K 65
             K
Sbjct:   193 K 193

GO:0002553 "histamine secretion by mast cell" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006605 "protein targeting" evidence=IDA

GO:0006626 "protein targeting to mitochondrion" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0010941 "regulation of cell death" evidence=IGI

GO:0014069 "postsynaptic density" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=IDA

GO:0031252 "cell leading edge" evidence=ISO

GO:0032403 "protein complex binding" evidence=ISO

GO:0042493 "response to drug" evidence=ISO

GO:0043234 "protein complex" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

RGD|3980 Ywhaz "tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query:     5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
             GD+ ++G +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct:   135 GDD-KKG-IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192

Query:    65 K 65
             K
Sbjct:   193 K 193

GO:0002553 "histamine secretion by mast cell" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006605 "protein targeting" evidence=ISO

GO:0006626 "protein targeting to mitochondrion" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IEA;ISO

GO:0010941 "regulation of cell death" evidence=IEA;ISO

GO:0014069 "postsynaptic density" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=ISO;ISS

GO:0031252 "cell leading edge" evidence=IDA

GO:0032403 "protein complex binding" evidence=IPI

GO:0042470 "melanosome" evidence=IEA

GO:0042493 "response to drug" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|E1BDS9 LOC100140254 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 48/61 (78%), Positives = 56/61 (91%)

Query:     5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
             GD+ ++G +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct:    13 GDD-KKG-IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 70

Query:    65 K 65
             K
Sbjct:    71 K 71

GO:0019904 "protein domain specific binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	220
cd11310	230	cd11310, 14-3-3_1, 14-3-3 protein domain	2e-30
pfam00244	236	pfam00244, 14-3-3, 14-3-3 protein	3e-30
cd11310	230	cd11310, 14-3-3_1, 14-3-3 protein domain	1e-29
pfam00244	236	pfam00244, 14-3-3, 14-3-3 protein	1e-28
cd08774	225	cd08774, 14-3-3, 14-3-3 domain	2e-28
cd10022	229	cd10022, 14-3-3_beta_zeta, 14-3-3 beta and zeta is	9e-28
cd08774	225	cd08774, 14-3-3, 14-3-3 domain	9e-27
cd10023	234	cd10023, 14-3-3_theta, 14-3-3 theta/tau (theta in	3e-26
cd10023	234	cd10023, 14-3-3_theta, 14-3-3 theta/tau (theta in	3e-25
cd10022	229	cd10022, 14-3-3_beta_zeta, 14-3-3 beta and zeta is	4e-25
cd10025	239	cd10025, 14-3-3_eta, 14-3-3 eta, an isoform of 14-	7e-22
COG5040	268	COG5040, BMH1, 14-3-3 family protein [Signal trans	1e-21
smart00101	244	smart00101, 14_3_3, 14-3-3 homologues	1e-21
cd11309	231	cd11309, 14-3-3_fungi, Fungal 14-3-3 protein domai	1e-21
smart00101	244	smart00101, 14_3_3, 14-3-3 homologues	3e-21
cd11309	231	cd11309, 14-3-3_fungi, Fungal 14-3-3 protein domai	4e-21
cd10025	239	cd10025, 14-3-3_eta, 14-3-3 eta, an isoform of 14-	1e-20
COG5040	268	COG5040, BMH1, 14-3-3 family protein [Signal trans	1e-20
cd10024	246	cd10024, 14-3-3_gamma, 14-3-3 gamma, an isoform of	1e-20
cd10026	237	cd10026, 14-3-3_plant, Plant 14-3-3 protein domain	2e-20
cd10024	246	cd10024, 14-3-3_gamma, 14-3-3 gamma, an isoform of	3e-20
cd10020	230	cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isofor	1e-19
cd10026	237	cd10026, 14-3-3_plant, Plant 14-3-3 protein domain	3e-19
cd10020	230	cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isofor	3e-19
cd10019	242	cd10019, 14-3-3_sigma, 14-3-3 sigma, an isoform of	5e-19
cd10019	242	cd10019, 14-3-3_sigma, 14-3-3 sigma, an isoform of	1e-18
cd11310	230	cd11310, 14-3-3_1, 14-3-3 protein domain	3e-13
pfam00244	236	pfam00244, 14-3-3, 14-3-3 protein	1e-11
cd10022	229	cd10022, 14-3-3_beta_zeta, 14-3-3 beta and zeta is	1e-11
cd10023	234	cd10023, 14-3-3_theta, 14-3-3 theta/tau (theta in	8e-11
cd08774	225	cd08774, 14-3-3, 14-3-3 domain	2e-09
cd10025	239	cd10025, 14-3-3_eta, 14-3-3 eta, an isoform of 14-	8e-09
cd10024	246	cd10024, 14-3-3_gamma, 14-3-3 gamma, an isoform of	3e-08
cd10019	242	cd10019, 14-3-3_sigma, 14-3-3 sigma, an isoform of	2e-07
cd10020	230	cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isofor	3e-06
COG5040	268	COG5040, BMH1, 14-3-3 family protein [Signal trans	4e-06
smart00101	244	smart00101, 14_3_3, 14-3-3 homologues	3e-05
cd10026	237	cd10026, 14-3-3_plant, Plant 14-3-3 protein domain	1e-04
cd11309	231	cd11309, 14-3-3_fungi, Fungal 14-3-3 protein domai	6e-04

>gnl|CDD|206764 cd11310, 14-3-3_1, 14-3-3 protein domain

 Score =  112 bits (280), Expect = 2e-30
 Identities = 50/58 (86%), Positives = 55/58 (94%)

Query: 9   QEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
              +VV+DSQKAYQ+AF+ISK+KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ
Sbjct: 136 TRNSVVEDSQKAYQEAFDISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 193

This 14-3-3 domain family includes proteins in Caenorhabditis elegans, the silkworm (Bombyx mori) as well as barley (Hordeum vulgare). In C. elegans, 14-3-3 proteins are SIR-2.1 binding partners which induce transcriptional activation of DAF-16 during stress and are required for the life-span extension conferred by extra copies of sir-2.1. In B. mori, the 14-3-3 proteins are expressed widely in larval and adult tissues, including the brain, fat body, Malpighian tube, silk gland, midgut, testis, ovary, antenna, and pheromone gland, and interact with the N-terminal fragment of Hsp60, suggesting that 14-3-3 (a molecular adaptor) and Hsp60 (a molecular chaperone) work together to achieve a wide range of cellular functions in B. mori. In barley aleurone cells, 14-3-3 proteins and members of the ABF transcription factor family have a regulatory function in the gibberellic acid (GA) pathway since the balance of GA and abscisic acid (ABA) is a determining factor during transition of embryogenesis and seed germination. 14-3-3 is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 230

>gnl|CDD|215815 pfam00244, 14-3-3, 14-3-3 protein

 Score =  111 bits (279), Expect = 3e-30
 Identities = 41/63 (65%), Positives = 51/63 (80%), Gaps = 2/63 (3%)

Query: 4   DGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 63
            GDE +E    D + +AY+ A EI++ ++ PTHPIRLGLALNFSVFYYEILNSP+KAC+L
Sbjct: 134 SGDERKE--AADKALEAYKAALEIAEKELPPTHPIRLGLALNFSVFYYEILNSPEKACEL 191

Query: 64  AKQ 66
           AKQ
Sbjct: 192 AKQ 194

Length = 236

>gnl|CDD|206764 cd11310, 14-3-3_1, 14-3-3 protein domain

 Score =  109 bits (274), Expect = 1e-29
 Identities = 48/55 (87%), Positives = 53/55 (96%)

Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           +VVEDSQKAYQEAFDI+K+KMQPTHPIRLGLALNFSVFYYEI+NSP +AC LAKQ
Sbjct: 139 SVVEDSQKAYQEAFDISKAKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 193

This 14-3-3 domain family includes proteins in Caenorhabditis elegans, the silkworm (Bombyx mori) as well as barley (Hordeum vulgare). In C. elegans, 14-3-3 proteins are SIR-2.1 binding partners which induce transcriptional activation of DAF-16 during stress and are required for the life-span extension conferred by extra copies of sir-2.1. In B. mori, the 14-3-3 proteins are expressed widely in larval and adult tissues, including the brain, fat body, Malpighian tube, silk gland, midgut, testis, ovary, antenna, and pheromone gland, and interact with the N-terminal fragment of Hsp60, suggesting that 14-3-3 (a molecular adaptor) and Hsp60 (a molecular chaperone) work together to achieve a wide range of cellular functions in B. mori. In barley aleurone cells, 14-3-3 proteins and members of the ABF transcription factor family have a regulatory function in the gibberellic acid (GA) pathway since the balance of GA and abscisic acid (ABA) is a determining factor during transition of embryogenesis and seed germination. 14-3-3 is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 230

>gnl|CDD|215815 pfam00244, 14-3-3, 14-3-3 protein

 Score =  106 bits (268), Expect = 1e-28
 Identities = 35/61 (57%), Positives = 45/61 (73%)

Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSC 152
              + + +AY+ A +IA+ ++ PTHPIRLGLALNFSVFYYEI+NSP +AC LAKQ     
Sbjct: 140 EAADKALEAYKAALEIAEKELPPTHPIRLGLALNFSVFYYEILNSPEKACELAKQAFDEA 199

Query: 153 I 153
           I
Sbjct: 200 I 200

Length = 236

>gnl|CDD|206755 cd08774, 14-3-3, 14-3-3 domain

 Score =  106 bits (266), Expect = 2e-28
 Identities = 40/63 (63%), Positives = 51/63 (80%), Gaps = 2/63 (3%)

Query: 4   DGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQL 63
            GDE +E    + ++KAYQ+A EI+K  + PTHPIRLGLALNFSVFYYEILN P++AC+L
Sbjct: 133 SGDERKE--AAEKAKKAYQEALEIAKKLLPPTHPIRLGLALNFSVFYYEILNDPEEACKL 190

Query: 64  AKQ 66
           AK+
Sbjct: 191 AKK 193

14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. 14-3-3 proteins play important roles in many biological processes that are regulated by phosphorylation, including cell cycle regulation, cell proliferation, protein trafficking, metabolic regulation and apoptosis. More than 300 binding partners of the 14-3-3 domain have been identified in all subcellular compartments and include transcription factors, signaling molecules, tumor suppressors, biosynthetic enzymes, cytoskeletal proteins and apoptosis factors. 14-3-3 binding can alter the conformation, localization, stability, phosphorylation state, activity as well as molecular interactions of a target protein. They function only as dimers, some preferring strictly homodimeric interaction, while others form heterodimers. Binding of the 14-3-3 domain to its target occurs in a phosphospecific manner where it binds to one of two consensus sequences of their target proteins; RSXpSXP (mode-1) and RXXXpSXP (mode-2). In some instances, 14-3-3 domain containing proteins are involved in regulation and signaling of a number of cellular processes in phosphorylation-independent manner. Many organisms express multiple isoforms: there are seven mammalian 14-3-3 family members (beta, gamma, eta, theta, epsilon, sigma, zeta), each encoded by a distinct gene, while plants contain up to 13 isoforms. The flexible C-terminal segment of 14-3-3 isoforms shows the highest sequence variability and may significantly contribute to individual isoform uniqueness by playing an important regulatory role by occupying the ligand binding groove and blocking the binding of inappropriate ligands in a distinct manner. Elevated amounts of 14-3-3 proteins are found in the cerebrospinal fluid of patients with Creutzfeldt-Jakob disease. In protozoa, like Plasmodium or Cryptosporidium parvum 14-3-3 proteins play an important role in key steps of parasite development. Length = 225

>gnl|CDD|206758 cd10022, 14-3-3_beta_zeta, 14-3-3 beta and zeta isoforms of 14-3-3 protein

 Score =  104 bits (261), Expect = 9e-28
 Identities = 46/61 (75%), Positives = 54/61 (88%), Gaps = 2/61 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +V+ SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 134 GDDKKG--IVEQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 191

Query: 65  K 65
           K
Sbjct: 192 K 192

14-3-3 protein beta and zeta isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta and zeta polypeptide) are encoded by the YWHAB gene and YWHAZ gene in humans. They have been linked to mitogenic signaling and the cell cycle machinery, and to cancer initiation and progression, respectively. The beta isoform has been shown to interact with RAF1 and CDC25 phosphatases and its overexpression is associated with invasion, migration, metastasis and proliferation of tumor cells and its elevated levels are correlated with tumor size, the number of lymph node metastases and a reduced survival rate. It is significantly overexpressed in lung cancer tissues, mutated chronic lymphocytic leukemia (M-CLL), gastric cancer tissues, aflatoxin B1-induced rat hepatocellular carcinoma K1 and K2 cells, as well as renal cell carcinoma cysts, and can potentially be used as a diagnostic and prognostic biomarker in the cancer. Numerous proteins involved in anti-apoptosis and tumor progression were also found to be differentially expressed in gastric cancer cells where 14-3-3 beta is overexpressed. 14-3-3 beta also interacts with human Dapper1 (hDpr1), a key negative regulator of Wnt signaling, via hDpr1 phosphorylation by protein kinase A, thus attenuating the ability of hDpr1 to promote Dishevelled (Dvl) degradation, and subsequently enhancing Wnt signaling. The zeta isoform is ubiquitously expressed and localized to most subcellular regions, including the cytoplasm, plasma membrane, mitochondria, and nucleus. Its overexpression and gene amplification in multiple cancers are correlated with poor prognosis and chemoresistance in cancer patients. 14-3-3 zeta has been identified as a biomarker with high sensitivity and specificity for diagnosis and prognosis in multiple tumor types, including hepatocellular carcinoma, head and neck cancer, indicating a potential clinical application for using 14-3-3 zeta in selecting treatment options and predicting cancer outcome. It also interacts with IRS1 protein, suggesting a role in regulating insulin sensitivity. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 229

>gnl|CDD|206755 cd08774, 14-3-3, 14-3-3 domain

 Score =  101 bits (255), Expect = 9e-27
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
              E ++KAYQEA +IAK  + PTHPIRLGLALNFSVFYYEI+N P  AC LAK+
Sbjct: 139 EAAEKAKKAYQEALEIAKKLLPPTHPIRLGLALNFSVFYYEILNDPEEACKLAKK 193

14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. 14-3-3 proteins play important roles in many biological processes that are regulated by phosphorylation, including cell cycle regulation, cell proliferation, protein trafficking, metabolic regulation and apoptosis. More than 300 binding partners of the 14-3-3 domain have been identified in all subcellular compartments and include transcription factors, signaling molecules, tumor suppressors, biosynthetic enzymes, cytoskeletal proteins and apoptosis factors. 14-3-3 binding can alter the conformation, localization, stability, phosphorylation state, activity as well as molecular interactions of a target protein. They function only as dimers, some preferring strictly homodimeric interaction, while others form heterodimers. Binding of the 14-3-3 domain to its target occurs in a phosphospecific manner where it binds to one of two consensus sequences of their target proteins; RSXpSXP (mode-1) and RXXXpSXP (mode-2). In some instances, 14-3-3 domain containing proteins are involved in regulation and signaling of a number of cellular processes in phosphorylation-independent manner. Many organisms express multiple isoforms: there are seven mammalian 14-3-3 family members (beta, gamma, eta, theta, epsilon, sigma, zeta), each encoded by a distinct gene, while plants contain up to 13 isoforms. The flexible C-terminal segment of 14-3-3 isoforms shows the highest sequence variability and may significantly contribute to individual isoform uniqueness by playing an important regulatory role by occupying the ligand binding groove and blocking the binding of inappropriate ligands in a distinct manner. Elevated amounts of 14-3-3 proteins are found in the cerebrospinal fluid of patients with Creutzfeldt-Jakob disease. In protozoa, like Plasmodium or Cryptosporidium parvum 14-3-3 proteins play an important role in key steps of parasite development. Length = 225

>gnl|CDD|206759 cd10023, 14-3-3_theta, 14-3-3 theta/tau (theta in mice, tau in human), an isoform of 14-3-3 protein

 Score =  101 bits (252), Expect = 3e-26
 Identities = 40/55 (72%), Positives = 48/55 (87%)

Query: 12  AVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
             +++SQ AYQ+AF+ISK +MQPTHPIRLGLALNFSVFYYEILN+P+ AC LAK 
Sbjct: 140 QTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKT 194

14-3-3 tau/theta (tau in humans, theta in mice) isoform (also known as tyrosine 3-monooxygenase/ tryptophan 5-monooxygenase activation protein, theta polypeptide) is encoded by the YWHAQ gene in humans and plays an important role in controlling apoptosis through interactions with ASK1, c-jun NH-terminal kinase, and p38 mitogen-activated protein kinase (MAPK). Its interaction with CDC25c regulates entry into the cell cycle and subsequent interaction with Bad prevents apoptosis. 14-3-3 theta protein expression is induced in patients with amyotrophic lateral sclerosis. 14-3-3 tau is often overexpressed in breast cancer, which is associated with the downregulation of p21, a p53 target gene, and thus leads to tamoxifen resistance in MCF7 breast cancer cells and shorter patient survival. Therefore, 14-3-3 tau may be a potential therapeutic target in breast cancer. Additionally, 14-3-3 theta mediates nucleocytoplasmic shuttling of the coronavirus nucleocapsid protein which causes severe acute respiratory syndrome. 14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 234

>gnl|CDD|206759 cd10023, 14-3-3_theta, 14-3-3 theta/tau (theta in mice, tau in human), an isoform of 14-3-3 protein

 Score = 98.2 bits (244), Expect = 3e-25
 Identities = 41/55 (74%), Positives = 47/55 (85%)

Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
             +E+SQ AYQEAFDI+K +MQPTHPIRLGLALNFSVFYYEI+N+P  AC LAK 
Sbjct: 140 QTIENSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAKT 194

14-3-3 tau/theta (tau in humans, theta in mice) isoform (also known as tyrosine 3-monooxygenase/ tryptophan 5-monooxygenase activation protein, theta polypeptide) is encoded by the YWHAQ gene in humans and plays an important role in controlling apoptosis through interactions with ASK1, c-jun NH-terminal kinase, and p38 mitogen-activated protein kinase (MAPK). Its interaction with CDC25c regulates entry into the cell cycle and subsequent interaction with Bad prevents apoptosis. 14-3-3 theta protein expression is induced in patients with amyotrophic lateral sclerosis. 14-3-3 tau is often overexpressed in breast cancer, which is associated with the downregulation of p21, a p53 target gene, and thus leads to tamoxifen resistance in MCF7 breast cancer cells and shorter patient survival. Therefore, 14-3-3 tau may be a potential therapeutic target in breast cancer. Additionally, 14-3-3 theta mediates nucleocytoplasmic shuttling of the coronavirus nucleocapsid protein which causes severe acute respiratory syndrome. 14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 234

>gnl|CDD|206758 cd10022, 14-3-3_beta_zeta, 14-3-3 beta and zeta isoforms of 14-3-3 protein

 Score = 97.8 bits (243), Expect = 4e-25
 Identities = 42/53 (79%), Positives = 49/53 (92%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +VE SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 140 IVEQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 192

14-3-3 protein beta and zeta isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta and zeta polypeptide) are encoded by the YWHAB gene and YWHAZ gene in humans. They have been linked to mitogenic signaling and the cell cycle machinery, and to cancer initiation and progression, respectively. The beta isoform has been shown to interact with RAF1 and CDC25 phosphatases and its overexpression is associated with invasion, migration, metastasis and proliferation of tumor cells and its elevated levels are correlated with tumor size, the number of lymph node metastases and a reduced survival rate. It is significantly overexpressed in lung cancer tissues, mutated chronic lymphocytic leukemia (M-CLL), gastric cancer tissues, aflatoxin B1-induced rat hepatocellular carcinoma K1 and K2 cells, as well as renal cell carcinoma cysts, and can potentially be used as a diagnostic and prognostic biomarker in the cancer. Numerous proteins involved in anti-apoptosis and tumor progression were also found to be differentially expressed in gastric cancer cells where 14-3-3 beta is overexpressed. 14-3-3 beta also interacts with human Dapper1 (hDpr1), a key negative regulator of Wnt signaling, via hDpr1 phosphorylation by protein kinase A, thus attenuating the ability of hDpr1 to promote Dishevelled (Dvl) degradation, and subsequently enhancing Wnt signaling. The zeta isoform is ubiquitously expressed and localized to most subcellular regions, including the cytoplasm, plasma membrane, mitochondria, and nucleus. Its overexpression and gene amplification in multiple cancers are correlated with poor prognosis and chemoresistance in cancer patients. 14-3-3 zeta has been identified as a biomarker with high sensitivity and specificity for diagnosis and prognosis in multiple tumor types, including hepatocellular carcinoma, head and neck cancer, indicating a potential clinical application for using 14-3-3 zeta in selecting treatment options and predicting cancer outcome. It also interacts with IRS1 protein, suggesting a role in regulating insulin sensitivity. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 229

>gnl|CDD|206761 cd10025, 14-3-3_eta, 14-3-3 eta, an isoform of 14-3-3 protein

 Score = 89.8 bits (222), Expect = 7e-22
 Identities = 41/62 (66%), Positives = 51/62 (82%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
               ++ +VV+ S+ AY++AFEISK  MQPTHPIRLGLALNFSVFYYEI N+P++AC LA
Sbjct: 136 ASGEKKNSVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLA 195

Query: 65  KQ 66
           KQ
Sbjct: 196 KQ 197

14-3-3 eta isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide) is expressed mainly in brain, and is involved in hypothalamic-pituitary-adrenocortical (HPA) axis regulation. In humans, it is encoded by the YWHAH gene, and is a positional and functional candidate for schizophrenia as well as bipolar disorder (BP). This gene contains a 7 bp repeat sequence in its 5' Untranslated Region (UTR), and early-onset schizophrenia has been associated with changes in the number of this repeat. 14-3-3 eta and gamma are found in the serum and synovial fluid of patients with joint inflammation. Specifically, 14-3-3 eta, which plays a regulatory role in chondrogenic differentiation, is significantly overexpressed in juvenile rheumatoid arthritis (JRA), a chronic inflammatory disease often associated with growth impairment. Overexpression of Gremlin 1, the bone morphogenetic protein antagonist, may play an oncogenic role in carcinomas of the uterine cervix, lung, ovary, kidney, breast, colon, pancreas, and sarcoma, since it functions by interaction with the 14-3-3 eta domain. Therefore, Gremlin 1 and its binding protein 14-3-3 eta could be appropriate targets for developing diagnostic and therapeutic strategies against human cancers. 14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 239

>gnl|CDD|227373 COG5040, BMH1, 14-3-3 family protein [Signal transduction mechanisms]

 Score = 89.6 bits (222), Expect = 1e-21
 Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 2/63 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G+  +E A  D S +AY+ A EI+ +++ PTHPIRLGLALNFSVFYYEILNSPDKAC LA
Sbjct: 139 GEAREEAA--DSSLEAYKAASEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLA 196

Query: 65  KQV 67
           KQ 
Sbjct: 197 KQA 199

Length = 268

>gnl|CDD|128412 smart00101, 14_3_3, 14-3-3 homologues

 Score = 89.2 bits (221), Expect = 1e-21
 Identities = 39/62 (62%), Positives = 50/62 (80%), Gaps = 2/62 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G E +E A  +++  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC LA
Sbjct: 137 GAERKEAA--ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLA 194

Query: 65  KQ 66
           KQ
Sbjct: 195 KQ 196

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. Length = 244

>gnl|CDD|206763 cd11309, 14-3-3_fungi, Fungal 14-3-3 protein domain

 Score = 88.5 bits (219), Expect = 1e-21
 Identities = 41/63 (65%), Positives = 50/63 (79%), Gaps = 2/63 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +E A  D S +AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD AC LA
Sbjct: 135 GDKRKEAA--DSSLEAYKAASDIAVTELPPTHPIRLGLALNFSVFYYEILNSPDSACHLA 192

Query: 65  KQV 67
           KQ 
Sbjct: 193 KQA 195

This family containing fungal 14-3-3 domains includes the yeasts Saccharomyces cerevisiae (BMH1 and BMH2) and Schizosaccharomyces pombe (rad24 and rad25) isoforms. They possess distinctively variant C-terminal segments that differentiate them from the mammalian isoforms; the C-terminus is longer and BMH1/2 isoforms contain polyglutamine (polyQ) sequences of unknown function. The C-terminal segments of yeast 14-3-3 isoforms may thus behave in a different manner compared to the higher eukaryote isoforms. Yeast 14-3-3 proteins bind to numerous proteins involved in a variety of yeast cellular processes making them excellent model organisms for elucidating the function of the 14-3-3 protein family. BMH1 and BMH2 are positive regulators of rapamycin-sensitive signaling via TOR kinases while they play an inhibitory role in Rtg3p-dependent transcription involved in retrograde signaling. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 231

>gnl|CDD|128412 smart00101, 14_3_3, 14-3-3 homologues

 Score = 87.7 bits (217), Expect = 3e-21
 Identities = 37/52 (71%), Positives = 45/52 (86%)

Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           E++  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQ
Sbjct: 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 196

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. Length = 244

>gnl|CDD|206763 cd11309, 14-3-3_fungi, Fungal 14-3-3 protein domain

 Score = 87.4 bits (216), Expect = 4e-21
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query: 98  SQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148
           S +AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP  ACHLAKQ 
Sbjct: 145 SLEAYKAASDIAVTELPPTHPIRLGLALNFSVFYYEILNSPDSACHLAKQA 195

This family containing fungal 14-3-3 domains includes the yeasts Saccharomyces cerevisiae (BMH1 and BMH2) and Schizosaccharomyces pombe (rad24 and rad25) isoforms. They possess distinctively variant C-terminal segments that differentiate them from the mammalian isoforms; the C-terminus is longer and BMH1/2 isoforms contain polyglutamine (polyQ) sequences of unknown function. The C-terminal segments of yeast 14-3-3 isoforms may thus behave in a different manner compared to the higher eukaryote isoforms. Yeast 14-3-3 proteins bind to numerous proteins involved in a variety of yeast cellular processes making them excellent model organisms for elucidating the function of the 14-3-3 protein family. BMH1 and BMH2 are positive regulators of rapamycin-sensitive signaling via TOR kinases while they play an inhibitory role in Rtg3p-dependent transcription involved in retrograde signaling. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 231

>gnl|CDD|206761 cd10025, 14-3-3_eta, 14-3-3 eta, an isoform of 14-3-3 protein

 Score = 85.9 bits (212), Expect = 1e-20
 Identities = 41/55 (74%), Positives = 48/55 (87%)

Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           +VVE S+ AY+EAF+I+K  MQPTHPIRLGLALNFSVFYYEI N+P +AC LAKQ
Sbjct: 143 SVVEASEAAYKEAFEISKEHMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQ 197

14-3-3 eta isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide) is expressed mainly in brain, and is involved in hypothalamic-pituitary-adrenocortical (HPA) axis regulation. In humans, it is encoded by the YWHAH gene, and is a positional and functional candidate for schizophrenia as well as bipolar disorder (BP). This gene contains a 7 bp repeat sequence in its 5' Untranslated Region (UTR), and early-onset schizophrenia has been associated with changes in the number of this repeat. 14-3-3 eta and gamma are found in the serum and synovial fluid of patients with joint inflammation. Specifically, 14-3-3 eta, which plays a regulatory role in chondrogenic differentiation, is significantly overexpressed in juvenile rheumatoid arthritis (JRA), a chronic inflammatory disease often associated with growth impairment. Overexpression of Gremlin 1, the bone morphogenetic protein antagonist, may play an oncogenic role in carcinomas of the uterine cervix, lung, ovary, kidney, breast, colon, pancreas, and sarcoma, since it functions by interaction with the 14-3-3 eta domain. Therefore, Gremlin 1 and its binding protein 14-3-3 eta could be appropriate targets for developing diagnostic and therapeutic strategies against human cancers. 14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 239

>gnl|CDD|227373 COG5040, BMH1, 14-3-3 family protein [Signal transduction mechanisms]

 Score = 86.9 bits (215), Expect = 1e-20
 Identities = 36/55 (65%), Positives = 45/55 (81%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148
             + S +AY+ A +IA +++ PTHPIRLGLALNFSVFYYEI+NSP +ACHLAKQ 
Sbjct: 145 AADSSLEAYKAASEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQA 199

Length = 268

>gnl|CDD|206760 cd10024, 14-3-3_gamma, 14-3-3 gamma, an isoform of 14-3-3 protein

 Score = 86.4 bits (213), Expect = 1e-20
 Identities = 40/53 (75%), Positives = 46/53 (86%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           VVE S+KAY EA +I+K  MQPTHPIRLGLALN+SVFYYEI N+P +ACHLAK
Sbjct: 145 VVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAK 197

14-3-3 gamma isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide) is encoded by the YWHAG gene in humans and is induced by growth factors in human vascular smooth muscle cells. It is also highly expressed in skeletal and heart muscles, suggesting an important role in muscle tissue. It has been shown to interact with RAF1 and protein kinase C, proteins involved in various signal transduction pathways. 14-3-3 gamma mediates Cdc25A proteolysis to block premature mitotic entry after DNA damage. 14-3-3 gamma mediates the interaction between Chk1 and Cdc25A; this complex has an essential function in Cdc25A phosphorylation and degradation to block premature mitotic entry after DNA damage. Increased expression of 14-3-3 gamma in lung cancer coincides with loss of functional p53, possibly in a cooperative manner promoting genomic instability. Also, during cell cycle, 14-3-3 gamma protects p21, a cyclin-dependent kinase inhibitor, from degradation mediated by the p53 suppressor MDMX, which may account for elevation of p21 levels independent of p53 and in response to DNA damage. Elevated expression of 14-3-3 gamma in human hepatocellular carcinoma predicts extrahepatic metastasis and worse survival, thus making this protein a candidate biomarker and a potential target for novel therapies against the disease. Length = 246

>gnl|CDD|206762 cd10026, 14-3-3_plant, Plant 14-3-3 protein domain

 Score = 85.5 bits (211), Expect = 2e-20
 Identities = 37/52 (71%), Positives = 43/52 (82%)

Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           E +  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAKQ
Sbjct: 145 ESTLLAYKAAQDIALTELAPTHPIRLGLALNFSVFYYEILNSPDRACTLAKQ 196

Plant 14-3-3 isoforms, similar to their highly conserved homologs in mammals, bind to phosphorylated target proteins to modulate their function. They have been implicated in a variety of physiological functions; in particular, abiotic and biotic stress responses, primary metabolism, as well as various aspects of plant growth and development. They function through the regulation of a diverse range of proteins including transcription factors, kinases, structural proteins, ion channels as well as pathogen defense-related proteins. The 14-3-3 proteins are affected transcriptionally as well as functionally by the environment of the plant, both intracellular and extracellular, thus playing a key role in the response to environmental stress, pathogens and light conditions. Plant 14-3-3 proteins have been divided into epsilon-like groups and non-epsilon groups based on phylogenetic clustering. They have a varying number of isoforms (for example, Arabidopsis has thirteen known protein isoforms, cotton has six) with variation in their affinity for specific binding partners, suggesting specific roles in specific processes. Length = 237

>gnl|CDD|206760 cd10024, 14-3-3_gamma, 14-3-3 gamma, an isoform of 14-3-3 protein

 Score = 85.6 bits (211), Expect = 3e-20
 Identities = 39/57 (68%), Positives = 47/57 (82%)

Query: 9   QEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAK 65
           +   VV+ S+KAY +A EISK  MQPTHPIRLGLALN+SVFYYEI N+P++AC LAK
Sbjct: 141 KRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAK 197

14-3-3 gamma isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide) is encoded by the YWHAG gene in humans and is induced by growth factors in human vascular smooth muscle cells. It is also highly expressed in skeletal and heart muscles, suggesting an important role in muscle tissue. It has been shown to interact with RAF1 and protein kinase C, proteins involved in various signal transduction pathways. 14-3-3 gamma mediates Cdc25A proteolysis to block premature mitotic entry after DNA damage. 14-3-3 gamma mediates the interaction between Chk1 and Cdc25A; this complex has an essential function in Cdc25A phosphorylation and degradation to block premature mitotic entry after DNA damage. Increased expression of 14-3-3 gamma in lung cancer coincides with loss of functional p53, possibly in a cooperative manner promoting genomic instability. Also, during cell cycle, 14-3-3 gamma protects p21, a cyclin-dependent kinase inhibitor, from degradation mediated by the p53 suppressor MDMX, which may account for elevation of p21 levels independent of p53 and in response to DNA damage. Elevated expression of 14-3-3 gamma in human hepatocellular carcinoma predicts extrahepatic metastasis and worse survival, thus making this protein a candidate biomarker and a potential target for novel therapies against the disease. Length = 246

>gnl|CDD|206757 cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isoform of 14-3-3 protein

 Score = 83.2 bits (205), Expect = 1e-19
 Identities = 37/51 (72%), Positives = 43/51 (84%)

Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           E+S  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAK
Sbjct: 143 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAK 193

14-3-3 protein epsilon isoform (isoform (also known as tyrosine 3-monooxygenase/ tryptophan 5-monooxygenase activation protein, epsilon polypeptide) is encoded by the YWHAE gene in humans and is involved in cancer cell survival and growth. It interacts with CDC25 phosphatases, RAF1 and IRS1 proteins, suggesting its role in diverse biochemical activities related to signal transduction, such as cell division and regulation of insulin sensitivity. Overexpression of 14-3-3 epsilon in primary hepatocellular carcinoma (HCC) tissues predicts a high risk of extrahepatic metastasis and worse survival, and is a potential therapeutic target. It has also been implicated in the pathogenesis of small cell lung cancer. 14-3-3 epsilon overexpression protects colorectal cancer and endothelial cells from oxidative stress-induced apoptosis, while its suppression by non-steroidal anti-inflammatory drugs induces cancer and endothelial cell death. Cellular levels of 14-3-3 epsilon could possibly serve as an important regulator of cell survival in response to oxidative stress and other death signals. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 230

>gnl|CDD|206762 cd10026, 14-3-3_plant, Plant 14-3-3 protein domain

 Score = 82.8 bits (204), Expect = 3e-19
 Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 2/62 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G E +E A  + +  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC LA
Sbjct: 137 GAERKEAA--ESTLLAYKAAQDIALTELAPTHPIRLGLALNFSVFYYEILNSPDRACTLA 194

Query: 65  KQ 66
           KQ
Sbjct: 195 KQ 196

Plant 14-3-3 isoforms, similar to their highly conserved homologs in mammals, bind to phosphorylated target proteins to modulate their function. They have been implicated in a variety of physiological functions; in particular, abiotic and biotic stress responses, primary metabolism, as well as various aspects of plant growth and development. They function through the regulation of a diverse range of proteins including transcription factors, kinases, structural proteins, ion channels as well as pathogen defense-related proteins. The 14-3-3 proteins are affected transcriptionally as well as functionally by the environment of the plant, both intracellular and extracellular, thus playing a key role in the response to environmental stress, pathogens and light conditions. Plant 14-3-3 proteins have been divided into epsilon-like groups and non-epsilon groups based on phylogenetic clustering. They have a varying number of isoforms (for example, Arabidopsis has thirteen known protein isoforms, cotton has six) with variation in their affinity for specific binding partners, suggesting specific roles in specific processes. Length = 237

>gnl|CDD|206757 cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isoform of 14-3-3 protein

 Score = 82.4 bits (203), Expect = 3e-19
 Identities = 38/61 (62%), Positives = 51/61 (83%), Gaps = 2/61 (3%)

Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G++ +E A  ++S  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LA
Sbjct: 135 GNDRKEAA--ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLA 192

Query: 65  K 65
           K
Sbjct: 193 K 193

14-3-3 protein epsilon isoform (isoform (also known as tyrosine 3-monooxygenase/ tryptophan 5-monooxygenase activation protein, epsilon polypeptide) is encoded by the YWHAE gene in humans and is involved in cancer cell survival and growth. It interacts with CDC25 phosphatases, RAF1 and IRS1 proteins, suggesting its role in diverse biochemical activities related to signal transduction, such as cell division and regulation of insulin sensitivity. Overexpression of 14-3-3 epsilon in primary hepatocellular carcinoma (HCC) tissues predicts a high risk of extrahepatic metastasis and worse survival, and is a potential therapeutic target. It has also been implicated in the pathogenesis of small cell lung cancer. 14-3-3 epsilon overexpression protects colorectal cancer and endothelial cells from oxidative stress-induced apoptosis, while its suppression by non-steroidal anti-inflammatory drugs induces cancer and endothelial cell death. Cellular levels of 14-3-3 epsilon could possibly serve as an important regulator of cell survival in response to oxidative stress and other death signals. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 230

>gnl|CDD|206756 cd10019, 14-3-3_sigma, 14-3-3 sigma, an isoform of 14-3-3 protein

 Score = 82.0 bits (202), Expect = 5e-19
 Identities = 34/55 (61%), Positives = 43/55 (78%)

Query: 92  LAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
             +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 141 KRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 195

14-3-3 protein sigma isoform, also known as stratifin or human mammary epithelial marker (HME) 1, has been most directly linked to tumor development. In humans, it is expressed by the SFN gene, strictly in stratified squamous epithelial cells in response to DNA damage where it is transcriptionally induced in a p53-dependent manner, subsequently causing cell-cycle arrest at the G2/M checkpoint. Up-regulation and down-regulation of 14-3-3 sigma expression have both been described in tumors. For example, in human breast cancer, 14-3-3 sigma is predominantly down-regulated by CpG methylation, acting as both a tumor suppressor and a prognostic indicator, while in human scirrhous-type gastric carcinoma (SGC), it is up-regulated and may play an important role in SGC carcinogenesis and progression. Loss of 14-3-3 sigma expression sensitizes tumor cells to treatment with conventional cytostatic drugs, making this protein an attractive therapeutic target. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 242

>gnl|CDD|206756 cd10019, 14-3-3_sigma, 14-3-3 sigma, an isoform of 14-3-3 protein

 Score = 80.8 bits (199), Expect = 1e-18
 Identities = 34/53 (64%), Positives = 45/53 (84%)

Query: 13  VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAK 65
           ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LAK
Sbjct: 143 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 195

14-3-3 protein sigma isoform, also known as stratifin or human mammary epithelial marker (HME) 1, has been most directly linked to tumor development. In humans, it is expressed by the SFN gene, strictly in stratified squamous epithelial cells in response to DNA damage where it is transcriptionally induced in a p53-dependent manner, subsequently causing cell-cycle arrest at the G2/M checkpoint. Up-regulation and down-regulation of 14-3-3 sigma expression have both been described in tumors. For example, in human breast cancer, 14-3-3 sigma is predominantly down-regulated by CpG methylation, acting as both a tumor suppressor and a prognostic indicator, while in human scirrhous-type gastric carcinoma (SGC), it is up-regulated and may play an important role in SGC carcinogenesis and progression. Loss of 14-3-3 sigma expression sensitizes tumor cells to treatment with conventional cytostatic drugs, making this protein an attractive therapeutic target. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 242

>gnl|CDD|206764 cd11310, 14-3-3_1, 14-3-3 protein domain

 Score = 65.9 bits (160), Expect = 3e-13
 Identities = 32/34 (94%), Positives = 33/34 (97%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +KEELVQRAKLAEQAERYDDMAAAMK VTETGVE
Sbjct: 1   DKEELVQRAKLAEQAERYDDMAAAMKKVTETGVE 34

This 14-3-3 domain family includes proteins in Caenorhabditis elegans, the silkworm (Bombyx mori) as well as barley (Hordeum vulgare). In C. elegans, 14-3-3 proteins are SIR-2.1 binding partners which induce transcriptional activation of DAF-16 during stress and are required for the life-span extension conferred by extra copies of sir-2.1. In B. mori, the 14-3-3 proteins are expressed widely in larval and adult tissues, including the brain, fat body, Malpighian tube, silk gland, midgut, testis, ovary, antenna, and pheromone gland, and interact with the N-terminal fragment of Hsp60, suggesting that 14-3-3 (a molecular adaptor) and Hsp60 (a molecular chaperone) work together to achieve a wide range of cellular functions in B. mori. In barley aleurone cells, 14-3-3 proteins and members of the ABF transcription factor family have a regulatory function in the gibberellic acid (GA) pathway since the balance of GA and abscisic acid (ABA) is a determining factor during transition of embryogenesis and seed germination. 14-3-3 is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 230

>gnl|CDD|215815 pfam00244, 14-3-3, 14-3-3 protein

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 23/33 (69%), Positives = 24/33 (72%)

Query: 179 KEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +EELV  AKLAEQAERYDDM  AMK V E   E
Sbjct: 1   REELVYLAKLAEQAERYDDMVEAMKKVVELKEE 33

Length = 236

>gnl|CDD|206758 cd10022, 14-3-3_beta_zeta, 14-3-3 beta and zeta isoforms of 14-3-3 protein

 Score = 61.6 bits (149), Expect = 1e-11
 Identities = 28/34 (82%), Positives = 30/34 (88%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDDMAA MKAVTE G E
Sbjct: 1   DKNELVQKAKLAEQAERYDDMAACMKAVTEQGAE 34

14-3-3 protein beta and zeta isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta and zeta polypeptide) are encoded by the YWHAB gene and YWHAZ gene in humans. They have been linked to mitogenic signaling and the cell cycle machinery, and to cancer initiation and progression, respectively. The beta isoform has been shown to interact with RAF1 and CDC25 phosphatases and its overexpression is associated with invasion, migration, metastasis and proliferation of tumor cells and its elevated levels are correlated with tumor size, the number of lymph node metastases and a reduced survival rate. It is significantly overexpressed in lung cancer tissues, mutated chronic lymphocytic leukemia (M-CLL), gastric cancer tissues, aflatoxin B1-induced rat hepatocellular carcinoma K1 and K2 cells, as well as renal cell carcinoma cysts, and can potentially be used as a diagnostic and prognostic biomarker in the cancer. Numerous proteins involved in anti-apoptosis and tumor progression were also found to be differentially expressed in gastric cancer cells where 14-3-3 beta is overexpressed. 14-3-3 beta also interacts with human Dapper1 (hDpr1), a key negative regulator of Wnt signaling, via hDpr1 phosphorylation by protein kinase A, thus attenuating the ability of hDpr1 to promote Dishevelled (Dvl) degradation, and subsequently enhancing Wnt signaling. The zeta isoform is ubiquitously expressed and localized to most subcellular regions, including the cytoplasm, plasma membrane, mitochondria, and nucleus. Its overexpression and gene amplification in multiple cancers are correlated with poor prognosis and chemoresistance in cancer patients. 14-3-3 zeta has been identified as a biomarker with high sensitivity and specificity for diagnosis and prognosis in multiple tumor types, including hepatocellular carcinoma, head and neck cancer, indicating a potential clinical application for using 14-3-3 zeta in selecting treatment options and predicting cancer outcome. It also interacts with IRS1 protein, suggesting a role in regulating insulin sensitivity. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 229

>gnl|CDD|206759 cd10023, 14-3-3_theta, 14-3-3 theta/tau (theta in mice, tau in human), an isoform of 14-3-3 protein

 Score = 59.3 bits (143), Expect = 8e-11
 Identities = 26/34 (76%), Positives = 29/34 (85%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K EL+Q+AKLAEQAERYDDMA  MKAVTE G E
Sbjct: 2   DKTELIQKAKLAEQAERYDDMATCMKAVTEQGAE 35

14-3-3 tau/theta (tau in humans, theta in mice) isoform (also known as tyrosine 3-monooxygenase/ tryptophan 5-monooxygenase activation protein, theta polypeptide) is encoded by the YWHAQ gene in humans and plays an important role in controlling apoptosis through interactions with ASK1, c-jun NH-terminal kinase, and p38 mitogen-activated protein kinase (MAPK). Its interaction with CDC25c regulates entry into the cell cycle and subsequent interaction with Bad prevents apoptosis. 14-3-3 theta protein expression is induced in patients with amyotrophic lateral sclerosis. 14-3-3 tau is often overexpressed in breast cancer, which is associated with the downregulation of p21, a p53 target gene, and thus leads to tamoxifen resistance in MCF7 breast cancer cells and shorter patient survival. Therefore, 14-3-3 tau may be a potential therapeutic target in breast cancer. Additionally, 14-3-3 theta mediates nucleocytoplasmic shuttling of the coronavirus nucleocapsid protein which causes severe acute respiratory syndrome. 14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 234

>gnl|CDD|206755 cd08774, 14-3-3, 14-3-3 domain

 Score = 54.9 bits (133), Expect = 2e-09
 Identities = 22/32 (68%), Positives = 22/32 (68%)

Query: 180 EELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           EELV  AKLAEQAERYDDM   MK V E   E
Sbjct: 1   EELVYLAKLAEQAERYDDMVKYMKQVAELNGE 32

14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. 14-3-3 proteins play important roles in many biological processes that are regulated by phosphorylation, including cell cycle regulation, cell proliferation, protein trafficking, metabolic regulation and apoptosis. More than 300 binding partners of the 14-3-3 domain have been identified in all subcellular compartments and include transcription factors, signaling molecules, tumor suppressors, biosynthetic enzymes, cytoskeletal proteins and apoptosis factors. 14-3-3 binding can alter the conformation, localization, stability, phosphorylation state, activity as well as molecular interactions of a target protein. They function only as dimers, some preferring strictly homodimeric interaction, while others form heterodimers. Binding of the 14-3-3 domain to its target occurs in a phosphospecific manner where it binds to one of two consensus sequences of their target proteins; RSXpSXP (mode-1) and RXXXpSXP (mode-2). In some instances, 14-3-3 domain containing proteins are involved in regulation and signaling of a number of cellular processes in phosphorylation-independent manner. Many organisms express multiple isoforms: there are seven mammalian 14-3-3 family members (beta, gamma, eta, theta, epsilon, sigma, zeta), each encoded by a distinct gene, while plants contain up to 13 isoforms. The flexible C-terminal segment of 14-3-3 isoforms shows the highest sequence variability and may significantly contribute to individual isoform uniqueness by playing an important regulatory role by occupying the ligand binding groove and blocking the binding of inappropriate ligands in a distinct manner. Elevated amounts of 14-3-3 proteins are found in the cerebrospinal fluid of patients with Creutzfeldt-Jakob disease. In protozoa, like Plasmodium or Cryptosporidium parvum 14-3-3 proteins play an important role in key steps of parasite development. Length = 225

>gnl|CDD|206761 cd10025, 14-3-3_eta, 14-3-3 eta, an isoform of 14-3-3 protein

 Score = 53.6 bits (128), Expect = 8e-09
 Identities = 23/30 (76%), Positives = 30/30 (100%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTE 207
           ++E+L+QRA+LAEQAERYDDMA+AMK+VTE
Sbjct: 1   DREQLLQRARLAEQAERYDDMASAMKSVTE 30

14-3-3 eta isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide) is expressed mainly in brain, and is involved in hypothalamic-pituitary-adrenocortical (HPA) axis regulation. In humans, it is encoded by the YWHAH gene, and is a positional and functional candidate for schizophrenia as well as bipolar disorder (BP). This gene contains a 7 bp repeat sequence in its 5' Untranslated Region (UTR), and early-onset schizophrenia has been associated with changes in the number of this repeat. 14-3-3 eta and gamma are found in the serum and synovial fluid of patients with joint inflammation. Specifically, 14-3-3 eta, which plays a regulatory role in chondrogenic differentiation, is significantly overexpressed in juvenile rheumatoid arthritis (JRA), a chronic inflammatory disease often associated with growth impairment. Overexpression of Gremlin 1, the bone morphogenetic protein antagonist, may play an oncogenic role in carcinomas of the uterine cervix, lung, ovary, kidney, breast, colon, pancreas, and sarcoma, since it functions by interaction with the 14-3-3 eta domain. Therefore, Gremlin 1 and its binding protein 14-3-3 eta could be appropriate targets for developing diagnostic and therapeutic strategies against human cancers. 14-3-3 domain is an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 239

>gnl|CDD|206760 cd10024, 14-3-3_gamma, 14-3-3 gamma, an isoform of 14-3-3 protein

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 24/30 (80%), Positives = 29/30 (96%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTE 207
           ++E+LVQ+A+LAEQAERYDDMAAAMK VTE
Sbjct: 2   DREQLVQKARLAEQAERYDDMAAAMKNVTE 31

14-3-3 gamma isoform (also known as tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide) is encoded by the YWHAG gene in humans and is induced by growth factors in human vascular smooth muscle cells. It is also highly expressed in skeletal and heart muscles, suggesting an important role in muscle tissue. It has been shown to interact with RAF1 and protein kinase C, proteins involved in various signal transduction pathways. 14-3-3 gamma mediates Cdc25A proteolysis to block premature mitotic entry after DNA damage. 14-3-3 gamma mediates the interaction between Chk1 and Cdc25A; this complex has an essential function in Cdc25A phosphorylation and degradation to block premature mitotic entry after DNA damage. Increased expression of 14-3-3 gamma in lung cancer coincides with loss of functional p53, possibly in a cooperative manner promoting genomic instability. Also, during cell cycle, 14-3-3 gamma protects p21, a cyclin-dependent kinase inhibitor, from degradation mediated by the p53 suppressor MDMX, which may account for elevation of p21 levels independent of p53 and in response to DNA damage. Elevated expression of 14-3-3 gamma in human hepatocellular carcinoma predicts extrahepatic metastasis and worse survival, thus making this protein a candidate biomarker and a potential target for novel therapies against the disease. Length = 246

>gnl|CDD|206756 cd10019, 14-3-3_sigma, 14-3-3 sigma, an isoform of 14-3-3 protein

 Score = 50.0 bits (119), Expect = 2e-07
 Identities = 22/34 (64%), Positives = 26/34 (76%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 2   ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 35

14-3-3 protein sigma isoform, also known as stratifin or human mammary epithelial marker (HME) 1, has been most directly linked to tumor development. In humans, it is expressed by the SFN gene, strictly in stratified squamous epithelial cells in response to DNA damage where it is transcriptionally induced in a p53-dependent manner, subsequently causing cell-cycle arrest at the G2/M checkpoint. Up-regulation and down-regulation of 14-3-3 sigma expression have both been described in tumors. For example, in human breast cancer, 14-3-3 sigma is predominantly down-regulated by CpG methylation, acting as both a tumor suppressor and a prognostic indicator, while in human scirrhous-type gastric carcinoma (SGC), it is up-regulated and may play an important role in SGC carcinogenesis and progression. Loss of 14-3-3 sigma expression sensitizes tumor cells to treatment with conventional cytostatic drugs, making this protein an attractive therapeutic target. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 242

>gnl|CDD|206757 cd10020, 14-3-3_epsilon, 14-3-3 epsilon, an isoform of 14-3-3 protein

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 19/33 (57%), Positives = 24/33 (72%)

Query: 179 KEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +E+ V +AKLAEQAERYD+M  +MK V    VE
Sbjct: 1   REDNVYKAKLAEQAERYDEMVESMKKVAGMDVE 33

14-3-3 protein epsilon isoform (isoform (also known as tyrosine 3-monooxygenase/ tryptophan 5-monooxygenase activation protein, epsilon polypeptide) is encoded by the YWHAE gene in humans and is involved in cancer cell survival and growth. It interacts with CDC25 phosphatases, RAF1 and IRS1 proteins, suggesting its role in diverse biochemical activities related to signal transduction, such as cell division and regulation of insulin sensitivity. Overexpression of 14-3-3 epsilon in primary hepatocellular carcinoma (HCC) tissues predicts a high risk of extrahepatic metastasis and worse survival, and is a potential therapeutic target. It has also been implicated in the pathogenesis of small cell lung cancer. 14-3-3 epsilon overexpression protects colorectal cancer and endothelial cells from oxidative stress-induced apoptosis, while its suppression by non-steroidal anti-inflammatory drugs induces cancer and endothelial cell death. Cellular levels of 14-3-3 epsilon could possibly serve as an important regulator of cell survival in response to oxidative stress and other death signals. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 230

>gnl|CDD|227373 COG5040, BMH1, 14-3-3 family protein [Signal transduction mechanisms]

 Score = 46.1 bits (109), Expect = 4e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)

Query: 173 MSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           MS+S  +E+ V  AKLAEQAERY++M   MK V  +G E
Sbjct: 1   MSTS--REDSVYLAKLAEQAERYEEMVENMKLVASSGQE 37

Length = 268

>gnl|CDD|128412 smart00101, 14_3_3, 14-3-3 homologues

 Score = 43.4 bits (102), Expect = 3e-05
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 179 KEELVQRAKLAEQAERYDDMAAAMKAVTET 208
           +EE V  AKLAEQAERY++M   M+ V +T
Sbjct: 1   REENVYMAKLAEQAERYEEMVEFMEKVAKT 30

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. Length = 244

>gnl|CDD|206762 cd10026, 14-3-3_plant, Plant 14-3-3 protein domain

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 179 KEELVQRAKLAEQAERYDDMAAAMKAVTET 208
           +EE V  AKLAEQAERYD+M   M+ V ++
Sbjct: 1   REENVYMAKLAEQAERYDEMVEFMEKVAKS 30

Plant 14-3-3 isoforms, similar to their highly conserved homologs in mammals, bind to phosphorylated target proteins to modulate their function. They have been implicated in a variety of physiological functions; in particular, abiotic and biotic stress responses, primary metabolism, as well as various aspects of plant growth and development. They function through the regulation of a diverse range of proteins including transcription factors, kinases, structural proteins, ion channels as well as pathogen defense-related proteins. The 14-3-3 proteins are affected transcriptionally as well as functionally by the environment of the plant, both intracellular and extracellular, thus playing a key role in the response to environmental stress, pathogens and light conditions. Plant 14-3-3 proteins have been divided into epsilon-like groups and non-epsilon groups based on phylogenetic clustering. They have a varying number of isoforms (for example, Arabidopsis has thirteen known protein isoforms, cotton has six) with variation in their affinity for specific binding partners, suggesting specific roles in specific processes. Length = 237

>gnl|CDD|206763 cd11309, 14-3-3_fungi, Fungal 14-3-3 protein domain

 Score = 39.2 bits (91), Expect = 6e-04
 Identities = 17/33 (51%), Positives = 22/33 (66%)

Query: 179 KEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +E+ V  AKLAEQAERY++M   MK V  +  E
Sbjct: 1   REDSVYLAKLAEQAERYEEMVENMKKVASSDQE 33

This family containing fungal 14-3-3 domains includes the yeasts Saccharomyces cerevisiae (BMH1 and BMH2) and Schizosaccharomyces pombe (rad24 and rad25) isoforms. They possess distinctively variant C-terminal segments that differentiate them from the mammalian isoforms; the C-terminus is longer and BMH1/2 isoforms contain polyglutamine (polyQ) sequences of unknown function. The C-terminal segments of yeast 14-3-3 isoforms may thus behave in a different manner compared to the higher eukaryote isoforms. Yeast 14-3-3 proteins bind to numerous proteins involved in a variety of yeast cellular processes making them excellent model organisms for elucidating the function of the 14-3-3 protein family. BMH1 and BMH2 are positive regulators of rapamycin-sensitive signaling via TOR kinases while they play an inhibitory role in Rtg3p-dependent transcription involved in retrograde signaling. 14-3-3 domains are an essential part of 14-3-3 proteins, a ubiquitous class of regulatory, phosphoserine/threonine-binding proteins found in all eukaryotic cells, including yeast, protozoa and mammalian cells. Length = 231

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	220
COG5040	268	BMH1 14-3-3 family protein [Signal transduction me	100.0
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	100.0
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	99.97
KOG0841|consensus	247		99.97
COG5040	268	BMH1 14-3-3 family protein [Signal transduction me	99.89
smart00101	244	14_3_3 14-3-3 homologues. 14-3-3 homologues mediat	99.88
KOG0841|consensus	247		99.84
PF00244	236	14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14	99.82
KOG1840|consensus	508		96.22
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.57
KOG1840|consensus	508		94.64
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	94.17
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	91.53
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	91.18
KOG4626|consensus	966		88.58
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	87.15
KOG4626|consensus	966		86.74
PRK14720	906	transcript cleavage factor/unknown domain fusion p	82.05

>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.4e-36  Score=257.25  Aligned_cols=124  Identities=36%  Similarity=0.589  Sum_probs=115.3

Q ss_pred             CCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCC
Q psy5989          35 THPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQ  114 (220)
Q Consensus        35 t~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~  114 (220)
                      +|.|.-.-...+-||||.+.+|              +|||++++-.|+.       ++++.+.++++|+.|-++|..+||
T Consensus       107 ~hlipaa~~~EskvFyyKMKGD--------------YyRYlAEf~~G~~-------~~e~a~~slE~YK~AseiA~teLp  165 (268)
T COG5040         107 KHLIPAATTGESKVFYYKMKGD--------------YYRYLAEFSVGEA-------REEAADSSLEAYKAASEIATTELP  165 (268)
T ss_pred             HhcccccccccceEEEEeecch--------------HHHHHHHhccchH-------hHHHHHhHHHHHHHHHHHhhccCC
Confidence            4555555666789999999988              9999999999988       999999999999999999999999


Q ss_pred             CCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccchh
Q psy5989         115 PTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGEK  179 (220)
Q Consensus       115 pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~r  179 (220)
                      |||||||||+||||||||||+|+|++||.|||+|||+||.+||    ++|+|+|||||+|||+-.+|.-
T Consensus       166 PT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~ELDtLSEEsYkDSTLIMQLLRDNLTLWTS  234 (268)
T COG5040         166 PTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISELDTLSEESYKDSTLIMQLLRDNLTLWTS  234 (268)
T ss_pred             CCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHHhcceeeec
Confidence            9999999999999999999999999999999999999999998    7899999999999998877754

>smart00101 14_3_3 14-3-3 homologues

Probab=100.00  E-value=1.4e-34  Score=255.27  Aligned_cols=115  Identities=38%  Similarity=0.613  Sum_probs=108.4

Q ss_pred             chhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhccc
Q psy5989          45 NFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA  124 (220)
Q Consensus        45 N~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~  124 (220)
                      .-.|||+.+.+|              +|||++++..+++       |++++++|+++|+.|+++|+++|||||||||||+
T Consensus       115 eskVFy~KmKGD--------------YyRYlaE~~~~~e-------~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLa  173 (244)
T smart00101      115 ESKVFYLKMKGD--------------YHRYLAEFKTGAE-------RKEAAENTLVAYKSAQDIALAELPPTHPIRLGLA  173 (244)
T ss_pred             HHHHHHHHHHHH--------------HHHHHHHHcCcHH-------HHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHH
Confidence            457999998877              9999999999988       8999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccchhH
Q psy5989         125 LNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGEKE  180 (220)
Q Consensus       125 LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~r~  180 (220)
                      ||||||||||+++|++||.+|++|||+||+++|    ++|+|+++|||+|||+..+|.-+
T Consensus       174 LN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l~ee~y~dstlImqLLrDNL~lW~~~  233 (244)
T smart00101      174 LNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD  233 (244)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhccCC
Confidence            999999999999999999999999999999998    78999999999999988777653

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=99.97  E-value=1.3e-32  Score=240.77  Aligned_cols=146  Identities=30%  Similarity=0.532  Sum_probs=123.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Q psy5989          10 EGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFP   89 (220)
Q Consensus        10 r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~   89 (220)
                      |+++.+.-..-.++.+++-...|.|...     ..---|||+.+.+|              ++||++++..+++      
T Consensus        83 k~kie~EL~~~C~eii~lId~~Lip~~~-----~~eskvfy~KmkgD--------------yyRYlaE~~~~~~------  137 (236)
T PF00244_consen   83 KKKIEDELIDICNEIIRLIDKSLIPSAT-----SPESKVFYYKMKGD--------------YYRYLAEFDSGDE------  137 (236)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHS------SHHHHHHHHHHHHH--------------HHHHHHHCTTHHH------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccc-----chhHHHHHHHHhcc--------------ccccccccccchh------
Confidence            4445555555566666666665555532     33367899988876              9999999998877      


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhH
Q psy5989          90 CSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCL  165 (220)
Q Consensus        90 ~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~l  165 (220)
                       |++++++|+++|++|+++|+++|||+||+||||+||||||||||++++++||+||++|||+|++++|    +.|+|+++
T Consensus       138 -~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l~e~~~~d~~~  216 (236)
T PF00244_consen  138 -KKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTLSEESYKDSTL  216 (236)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGSHTTTHHHHHH
T ss_pred             -hHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhcccchhhhHHHHH
Confidence             8999999999999999999999999999999999999999999999999999999999999999997    77999999


Q ss_pred             HHHHhhcccccchhHH
Q psy5989         166 LCEIFHTMSSSGEKEE  181 (220)
Q Consensus       166 ilq~L~~~s~~s~r~~  181 (220)
                      |||+|||+..+|..+.
T Consensus       217 ilqlLrdNl~lW~~e~  232 (236)
T PF00244_consen  217 ILQLLRDNLTLWTSEE  232 (236)
T ss_dssp             HHHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHHHhccccc
Confidence            9999999988887664

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG0841|consensus

Probab=99.97  E-value=1.1e-31  Score=234.97  Aligned_cols=125  Identities=38%  Similarity=0.618  Sum_probs=111.7

Q ss_pred             hhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHH
Q psy5989          29 KSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDI  108 (220)
Q Consensus        29 ~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~ei  108 (220)
                      .+.|.|.-|.+    --..||||...+|              ++||++++..+++       |++++++++++|+.|.++
T Consensus       103 d~~Li~sa~~~----~es~vf~~kmKgd--------------y~rylae~~sg~e-------rke~~~~sl~aYk~a~~i  157 (247)
T KOG0841|consen  103 DKHLIPSATLP----GESKVFYLKMKGD--------------YYRYLAEFASGDE-------RKEAADQSLEAYKEASEI  157 (247)
T ss_pred             HHHHhhhcccc----cccceeeeeccch--------------hHHHHHHhcchhH-------HHHHHHHHHHHHHHHHHH
Confidence            34555555554    2346999976666              9999999999988       999999999999999999


Q ss_pred             HHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccch
Q psy5989         109 AKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGE  178 (220)
Q Consensus       109 A~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~  178 (220)
                      ++..|+|||||||||+||||||||||+|.|++||.|||+|||+||.++|    ++|+|+|+|||+|||+-++|.
T Consensus       158 a~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~eldtl~e~sykdStlimqllrdnltlWt  231 (247)
T KOG0841|consen  158 AKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWT  231 (247)
T ss_pred             HHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhccccHHHHhhhHHHHHHHHHhhhhhc
Confidence            9999999999999999999999999999999999999999999999998    889999999999999765543

>COG5040 BMH1 14-3-3 family protein [Signal transduction mechanisms]

Probab=99.89  E-value=9.6e-24  Score=181.77  Aligned_cols=71  Identities=55%  Similarity=0.823  Sum_probs=68.5

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHH
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFY   75 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~   75 (220)
                      .+|+.|+++++.++++|+.|.++|..+||||||||||||||||||||||+|+|++||.|||.||++....+
T Consensus       137 ~~G~~~~e~a~~slE~YK~AseiA~teLpPT~PirLGLALNfSVFyYEIlnspdkAC~lAKqaFDeAI~EL  207 (268)
T COG5040         137 SVGEAREEAADSSLEAYKAASEIATTELPPTHPIRLGLALNFSVFYYEILNSPDKACHLAKQAFDEAISEL  207 (268)
T ss_pred             ccchHhHHHHHhHHHHHHHHHHHhhccCCCCCchhhhheecceeeeeecccCcHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999998744

>smart00101 14_3_3 14-3-3 homologues

Probab=99.88  E-value=5.9e-23  Score=181.46  Aligned_cols=75  Identities=48%  Similarity=0.731  Sum_probs=70.1

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHh
Q psy5989           4 DGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFL   78 (220)
Q Consensus         4 ~~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~   78 (220)
                      ..+|++|++++++|+++|++|.++|..+|||||||||||+||||||||||+++|++||.+|++||++....+-.+
T Consensus       134 ~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ld~l  208 (244)
T smart00101      134 FKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTL  208 (244)
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence            357889999999999999999999998999999999999999999999999999999999999999998765544

14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.

>KOG0841|consensus

Probab=99.84  E-value=1.6e-21  Score=171.08  Aligned_cols=76  Identities=54%  Similarity=0.818  Sum_probs=69.0

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPE   83 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e   83 (220)
                      .+|++|++++++++++|+.|.++++.+|+|||||||||+||||||||||+|.|++||.|||+||++...   +++.-++
T Consensus       135 ~sg~erke~~~~sl~aYk~a~~ia~~~l~PthPirLgLaLnfSvf~yeilnsPe~ac~lak~a~d~ai~---eldtl~e  210 (247)
T KOG0841|consen  135 ASGDERKEAADQSLEAYKEASEIAKAELQPTHPIRLGLALNFSVFYYEILNSPERACSLAKQAFDEAIA---ELDTLSE  210 (247)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHH---hhccccH
Confidence            478999999999999999999999999999999999999999999999999999999999999888754   4444433

>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]

Probab=99.82  E-value=9.2e-21  Score=166.11  Aligned_cols=74  Identities=45%  Similarity=0.736  Sum_probs=68.7

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHh
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFL   78 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~   78 (220)
                      .+|++|++++++|.++|++|+++|..+||||||+||||+||||||||||++++++||.||++||++....+..+
T Consensus       133 ~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~~l  206 (236)
T PF00244_consen  133 DSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELDTL  206 (236)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGGGS
T ss_pred             ccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhccc
Confidence            47889999999999999999999999999999999999999999999999999999999999999999855544

There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....

>KOG1840|consensus

Probab=96.22  E-value=0.34  Score=47.62  Aligned_cols=180  Identities=15%  Similarity=0.131  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHH--------------HHHHHhc
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYF--------------CFYFFLM   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~--------------~~~~~~~   79 (220)
                      ..+|...|++|+.|-...+.++||-.--..-|.+|-||.. ++.++|-...+.|+.=+-              ..+.-+.
T Consensus       257 ~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~-GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~  335 (508)
T KOG1840|consen  257 YDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ-GKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL  335 (508)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc-CChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence            4578999999999999999999997766667788888753 444444444444433222              2222221


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHh----
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGA----  155 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~e----  155 (220)
                      .          .+.-.+.+...|+.|+++....+.+.||.-=|..-|+++-|+- ++..++|..+.++|+.-.-.-    
T Consensus       336 ~----------~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~  404 (508)
T KOG1840|consen  336 Q----------SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKK  404 (508)
T ss_pred             H----------HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCc
Confidence            1          1222478899999999999988999999999999999888777 688999999988886555322    


Q ss_pred             ----------hh-------------hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhH
Q psy5989         156 ----------SR-------------DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVT  206 (220)
Q Consensus       156 ----------ld-------------~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~  206 (220)
                                |.             .+|.++-=|+ .+.-+...+.=...--++++=++--|||+-++.-.+|.
T Consensus       405 ~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  405 DYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             ChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                      21             2344444555 33334444444566678888888888888888766665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.57  E-value=0.032  Score=39.28  Aligned_cols=53  Identities=19%  Similarity=0.329  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      ++|...|++|+++ .+.+++.||...-...|.+..++. ++++++|...-++|++
T Consensus        22 ~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   22 DEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHh
Confidence            8899999999999 667899888777777788887777 7999999999888876

...

>KOG1840|consensus

Probab=94.64  E-value=0.16  Score=49.92  Aligned_cols=134  Identities=18%  Similarity=0.107  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc--c--
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLF--P--   89 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~--~--   89 (220)
                      .+.+..-||.|.+|-...+.+.||.-=|.--|.++-|+ .++..++|-++.++|+............+.-.+-|.  .  
T Consensus       341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~  419 (508)
T KOG1840|consen  341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY  419 (508)
T ss_pred             hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH
Confidence            67888999999999998899999999999999988655 678899999999999887755333221110000010  0  


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          90 CSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        90 ~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      .+-.-...+.+.|.++..|. +...|.||--++..+|.++- |+-+++.++|+++......
T Consensus       420 ~~~k~~~~a~~l~~~~~~i~-~~~g~~~~~~~~~~~nL~~~-Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  420 EELKKYEEAEQLFEEAKDIM-KLCGPDHPDVTYTYLNLAAL-YRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHhcccchHHHHHHHHHHHH-HHhCCCCCchHHHHHHHHHH-HHHcccHHHHHHHHHHHHH
Confidence            12222456889999999999 68999999999999999886 5668999999999987653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=94.17  E-value=1.5  Score=42.83  Aligned_cols=86  Identities=13%  Similarity=0.141  Sum_probs=46.8

Q ss_pred             hhcChHHHHHHHHHHHH------HHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccch
Q psy5989          53 ILNSPDKACQLAKQVCA------HYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALN  126 (220)
Q Consensus        53 Il~~~~~A~~lAk~A~~------d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN  126 (220)
                      -+++.++|....+.++.      +.+.++..+..+          ..-.+.|...|++|+++... ..+.++..++ .+|
T Consensus       445 ~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~----------~g~~~~A~~~~~~Al~l~p~-~~~~~~~~~~-l~~  512 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLD----------QNKFDEAIEKFDTAIELEKE-TKPMYMNVLP-LIN  512 (615)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH----------ccCHHHHHHHHHHHHhcCCc-cccccccHHH-HHH
Confidence            35566666666655543      333444444111          11137788888888865431 2223322222 345


Q ss_pred             hHHHHHHHhcChHHHHHHHHHHHH
Q psy5989         127 FSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus       127 ~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      .+..+|+-.++.++|..+.++|+.
T Consensus       513 ~a~~~~~~~~~~~eA~~~~~kAl~  536 (615)
T TIGR00990       513 KALALFQWKQDFIEAENLCEKALI  536 (615)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHh
Confidence            555666667888888877776654

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=91.53  E-value=1  Score=33.66  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=55.8

Q ss_pred             HHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcc-cchhHHHHHHHhcChHHHHHHHHHH
Q psy5989          70 HYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGL-ALNFSVFYYEIINSPARACHLAKQV  148 (220)
Q Consensus        70 d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL-~LN~SVF~yEIl~~~~~A~~iAk~A  148 (220)
                      ++.+|+..+..++.            ..|.+...+.++.+.....+.+...+.. .||.+.+++. ++++++|+...++|
T Consensus         1 ~~l~~~~~~~~~dy------------~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eA   67 (94)
T PF12862_consen    1 HYLRYLNALRSGDY------------SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEA   67 (94)
T ss_pred             CHHHHHHHHHcCCH------------HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHH
Confidence            46778888888888            7788888888888887777775444444 4778887777 69999998877777


Q ss_pred             HHHHHHhhh
Q psy5989         149 KYSCIGASR  157 (220)
Q Consensus       149 fdeAi~eld  157 (220)
                      ++-|-..=|
T Consensus        68 i~~Are~~D   76 (94)
T PF12862_consen   68 IRLARENGD   76 (94)
T ss_pred             HHHHHHHCC
Confidence            776655444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=91.18  E-value=9.7  Score=37.25  Aligned_cols=165  Identities=8%  Similarity=0.068  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCCC
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFSP   86 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~~   86 (220)
                      +.|..+|+.|++..     +.+| ....+++.--..|..++++++|....++++.      ..+..+..+  ..++.   
T Consensus       311 ~~A~~~~~~al~~~-----~~~~-~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~---  381 (615)
T TIGR00990       311 EEAARAFEKALDLG-----KLGE-KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP---  381 (615)
T ss_pred             HHHHHHHHHHHhcC-----CCCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH---
Confidence            34555566655432     2334 3334455544455678999999999888874      334444444  22222   


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh---------
Q psy5989          87 LFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR---------  157 (220)
Q Consensus        87 ~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld---------  157 (220)
                               +.|...|++|+++     .|.+|-   +..+.+..++. +++.++|+...+++++.--....         
T Consensus       382 ---------~eA~~~~~~al~~-----~p~~~~---~~~~lg~~~~~-~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~  443 (615)
T TIGR00990       382 ---------DKAEEDFDKALKL-----NSEDPD---IYYHRAQLHFI-KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ  443 (615)
T ss_pred             ---------HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence                     6788888888753     566654   34455555554 78999988877777542111111         


Q ss_pred             ---hhhhhhh-HHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         158 ---DTKRSVC-LLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       158 ---~~~~d~~-lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                         .-+.++. .+-+.++..-  ...+-+.+++.+--+-.+|++-+....+.++.
T Consensus       444 ~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKNFP--EAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence               1122222 1112222111  22345566777777777888887777776654

>KOG4626|consensus

Probab=88.58  E-value=4.6  Score=41.44  Aligned_cols=122  Identities=18%  Similarity=0.206  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHH------HHHHHHHHHhcCCCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC------AHYFCFYFFLMNDPEFSPL   87 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~------~d~~~~~~~~~~~~e~~~~   87 (220)
                      +..+.++|++|+.     |.|+||--+   -|..+-|-| ++..+.|..+=++||      +..+..++-+-++.     
T Consensus       336 V~ea~~cYnkaL~-----l~p~hadam---~NLgni~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqq-----  401 (966)
T KOG4626|consen  336 VTEAVDCYNKALR-----LCPNHADAM---NNLGNIYRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQ-----  401 (966)
T ss_pred             hHHHHHHHHHHHH-----hCCccHHHH---HHHHHHHHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhc-----
Confidence            5567777777764     667777543   345555555 455778887776664      45566666663331     


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHH------HHHHHHHHhhhhhhh
Q psy5989          88 FPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK------QVKYSCIGASRDTKR  161 (220)
Q Consensus        88 ~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk------~AfdeAi~eld~~~~  161 (220)
                           ...++|..+|++|+.|     .|+   --.-.-|..+=|.| +++...|++.-.      .+|-+|.++|-+.||
T Consensus       402 -----gnl~~Ai~~YkealrI-----~P~---fAda~~NmGnt~ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  402 -----GNLDDAIMCYKEALRI-----KPT---FADALSNMGNTYKE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             -----ccHHHHHHHHHHHHhc-----Cch---HHHHHHhcchHHHH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence                 1247899999999864     344   33344567777777 588888877654      458899999988888


Q ss_pred             hh
Q psy5989         162 SV  163 (220)
Q Consensus       162 d~  163 (220)
                      |+
T Consensus       468 Ds  469 (966)
T KOG4626|consen  468 DS  469 (966)
T ss_pred             cc
Confidence            85

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=87.15  E-value=0.74  Score=32.20  Aligned_cols=54  Identities=19%  Similarity=0.292  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA   69 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~   69 (220)
                      -++|+..|++|+++ .+.+++.||.-.-...|.+.. |.-++++++|...-++|+.
T Consensus        21 ~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~-~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen   21 YDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGEC-YYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHh
Confidence            56899999999999 667888887654444555544 4566778888888777764

...

>KOG4626|consensus

Probab=86.74  E-value=3.1  Score=42.62  Aligned_cols=118  Identities=20%  Similarity=0.295  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHH------HHHHHHHHHhcCCCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC------AHYFCFYFFLMNDPEFSPL   87 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~------~d~~~~~~~~~~~~e~~~~   87 (220)
                      -++|..+|+.|.     .++|.|-+--|   |..+-||| .++.+-|+..=++|+      -|.++.+++-.++      
T Consensus       268 ~d~Avs~Y~rAl-----~lrpn~A~a~g---Nla~iYye-qG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd------  332 (966)
T KOG4626|consen  268 FDRAVSCYLRAL-----NLRPNHAVAHG---NLACIYYE-QGLLDLAIDTYKRALELQPNFPDAYNNLANALKD------  332 (966)
T ss_pred             chHHHHHHHHHH-----hcCCcchhhcc---ceEEEEec-cccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh------
Confidence            457888898886     37888877655   56666776 366677777766664      4778877777443      


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHH------HHHHHHhhhhh
Q psy5989          88 FPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV------KYSCIGASRDT  159 (220)
Q Consensus        88 ~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~A------fdeAi~eld~~  159 (220)
                          +--+..+.++|++|+.     |.|+||--+   -|..+-|-| .+..+.|..+=+.|      |..|.++|-..
T Consensus       333 ----~G~V~ea~~cYnkaL~-----l~p~hadam---~NLgni~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i  397 (966)
T KOG4626|consen  333 ----KGSVTEAVDCYNKALR-----LCPNHADAM---NNLGNIYRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASI  397 (966)
T ss_pred             ----ccchHHHHHHHHHHHH-----hCCccHHHH---HHHHHHHHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHH
Confidence                1235789999999985     679998654   466777777 46777777777776      34455555433

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=82.05  E-value=27  Score=37.03  Aligned_cols=104  Identities=14%  Similarity=0.138  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh-------------hhhh
Q psy5989          95 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR-------------DTKR  161 (220)
Q Consensus        95 ~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld-------------~~~~  161 (220)
                      .++|..+|+++++     +.|.||.    +||+=-|+|... +.++|..++++|+.--|..=.             .-..
T Consensus       132 ~~ka~~~yer~L~-----~D~~n~~----aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~  201 (906)
T PRK14720        132 NKKLKGVWERLVK-----ADRDNPE----IVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSD  201 (906)
T ss_pred             hHHHHHHHHHHHh-----cCcccHH----HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcc
Confidence            3678889998885     4588886    556555666656 999999999999877664421             1234


Q ss_pred             hhhHHHHHhhcccccchhHHHHHHHHH----HHHHhhHHHHHHHHHHhHhc
Q psy5989         162 SVCLLCEIFHTMSSSGEKEELVQRAKL----AEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       162 d~~lilq~L~~~s~~s~r~~~~~~akl----~eq~ery~~m~~~~~~~~~~  208 (220)
                      |....+++++...+.......|.+..-    -...|.||+-....|.+++.
T Consensus       202 d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~  252 (906)
T PRK14720        202 DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEH  252 (906)
T ss_pred             cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence            455777777776644445555544433    23478888888888888763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	220
2v7d_A	247	14-3-3 Protein Zeta In Complex With Thr758 Phosphor		9e-23
2v7d_A	247	14-3-3 Protein Zeta In Complex With Thr758 Phosphor		9e-21
2v7d_A	247	14-3-3 Protein Zeta In Complex With Thr758 Phosphor		1e-08
2c1j_A	258	Molecular Basis For The Recognition Of Phosphorylat		1e-22
2c1j_A	258	Molecular Basis For The Recognition Of Phosphorylat		9e-21
2c1j_A	258	Molecular Basis For The Recognition Of Phosphorylat		1e-08
1a38_A	245	14-3-3 Protein Zeta Bound To R18 Peptide Length = 2		1e-22
1a38_A	245	14-3-3 Protein Zeta Bound To R18 Peptide Length = 2		9e-21
1a38_A	245	14-3-3 Protein Zeta Bound To R18 Peptide Length = 2		1e-08
3rdh_A	248	X-Ray Induced Covalent Inhibition Of 14-3-3 Length		1e-22
3rdh_A	248	X-Ray Induced Covalent Inhibition Of 14-3-3 Length		1e-20
3rdh_A	248	X-Ray Induced Covalent Inhibition Of 14-3-3 Length		1e-08
4fj3_A	235	14-3-3 Isoform Zeta In Complex With A Diphoyphoryla		1e-22
4fj3_A	235	14-3-3 Isoform Zeta In Complex With A Diphoyphoryla		1e-20
4fj3_A	235	14-3-3 Isoform Zeta In Complex With A Diphoyphoryla		7e-09
2o02_A	230	Phosphorylation Independent Interactions Between 14		1e-22
2o02_A	230	Phosphorylation Independent Interactions Between 14		1e-20
2o02_A	230	Phosphorylation Independent Interactions Between 14		1e-08
2bq0_A	245	14-3-3 Protein Beta (Human) Length = 245		5e-22
2bq0_A	245	14-3-3 Protein Beta (Human) Length = 245		2e-20
2bq0_A	245	14-3-3 Protein Beta (Human) Length = 245		2e-09
4gnt_A	245	Complex Of Chrebp And 14-3-3beta Length = 245		1e-21
4gnt_A	245	Complex Of Chrebp And 14-3-3beta Length = 245		2e-20
4gnt_A	245	Complex Of Chrebp And 14-3-3beta Length = 245		2e-09
4dnk_A	247	Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYP		3e-21
4dnk_A	247	Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYP		1e-19
4dnk_A	247	Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYP		6e-05
2btp_A	256	14-3-3 Protein Theta (Human) Complexed To Peptide L		2e-20
2btp_A	256	14-3-3 Protein Theta (Human) Complexed To Peptide L		9e-20
2btp_A	256	14-3-3 Protein Theta (Human) Complexed To Peptide L		5e-09
2c63_A	247	14-3-3 Protein Eta (Human) Complexed To Peptide Len		2e-19
2c63_A	247	14-3-3 Protein Eta (Human) Complexed To Peptide Len		3e-19
2c63_A	247	14-3-3 Protein Eta (Human) Complexed To Peptide Len		6e-09
3uzd_A	248	Crystal Structure Of 14-3-3 Gamma Length = 248		7e-19
3uzd_A	248	Crystal Structure Of 14-3-3 Gamma Length = 248		1e-07
2b05_A	246	Crystal Structure Of 14-3-3 Gamma In Complex With A		7e-19
2b05_A	246	Crystal Structure Of 14-3-3 Gamma In Complex With A		1e-07
4e2e_A	248	Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYP		5e-18
4e2e_A	248	Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYP		5e-06
3m50_A	240	Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY E		7e-17
3m50_A	240	Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY E		7e-17
2o98_A	242	Structure Of The 14-3-3 H+-Atpase Plant Complex Len		7e-17
2o98_A	242	Structure Of The 14-3-3 H+-Atpase Plant Complex Len		7e-17
1o9c_A	260	Structural View Of A Fungal Toxin Acting On A 14-3-		8e-17
3smo_A	235	Crystal Structure Of Human 14-3-3 Sigma C38vN166H I		1e-16
3smo_A	235	Crystal Structure Of Human 14-3-3 Sigma C38vN166H I		4e-16
3smo_A	235	Crystal Structure Of Human 14-3-3 Sigma C38vN166H I		6e-06
3p1r_A	236	Crystal Structure Of Human 14-3-3 Sigma C38vN166H I		1e-16
3p1r_A	236	Crystal Structure Of Human 14-3-3 Sigma C38vN166H I		4e-16
3p1r_A	236	Crystal Structure Of Human 14-3-3 Sigma C38vN166H I		7e-06
3axy_C	240	Structure Of Florigen Activation Complex Consisting		1e-16
3axy_C	240	Structure Of Florigen Activation Complex Consisting		7e-16
3p1p_A	236	Crystal Structure Of Human 14-3-3 Sigma C38nN166H I		1e-16
3p1p_A	236	Crystal Structure Of Human 14-3-3 Sigma C38nN166H I		4e-16
3p1p_A	236	Crystal Structure Of Human 14-3-3 Sigma C38nN166H I		1e-05
2br9_A	234	14-3-3 Protein Epsilon (Human) Complexed To Peptide		2e-16
2br9_A	234	14-3-3 Protein Epsilon (Human) Complexed To Peptide		3e-16
2br9_A	234	14-3-3 Protein Epsilon (Human) Complexed To Peptide		2e-04
3ual_A	232	Crystal Structure Of 14-3-3 Epsilon With Mlf1 Pepti		2e-16
3ual_A	232	Crystal Structure Of 14-3-3 Epsilon With Mlf1 Pepti		3e-16
3ual_A	232	Crystal Structure Of 14-3-3 Epsilon With Mlf1 Pepti		3e-04
3ubw_A	261	Complex Of 14-3-3 Isoform Epsilon, A Mlf1 Phosphope		2e-16
3ubw_A	261	Complex Of 14-3-3 Isoform Epsilon, A Mlf1 Phosphope		3e-16
3ubw_A	261	Complex Of 14-3-3 Isoform Epsilon, A Mlf1 Phosphope		4e-05
4dx0_A	243	Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A		7e-16
4dx0_A	243	Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A		8e-16
3p1n_A	235	Crystal Structure Of Human 14-3-3 Sigma In Complex		8e-16
3p1n_A	235	Crystal Structure Of Human 14-3-3 Sigma In Complex		3e-15
3p1n_A	235	Crystal Structure Of Human 14-3-3 Sigma In Complex		1e-05
3u9x_A	235	Covalent Attachment Of Pyridoxal-Phosphate Derivati		8e-16
3u9x_A	235	Covalent Attachment Of Pyridoxal-Phosphate Derivati		3e-15
3u9x_A	235	Covalent Attachment Of Pyridoxal-Phosphate Derivati		1e-05
3iqj_A	236	Crystal Structure Of Human 14-3-3 Sigma In Complex		8e-16
3iqj_A	236	Crystal Structure Of Human 14-3-3 Sigma In Complex		3e-15
3iqj_A	236	Crystal Structure Of Human 14-3-3 Sigma In Complex		1e-05
3o8i_A	239	Structure Of 14-3-3 Isoform Sigma In Complex With A		8e-16
3o8i_A	239	Structure Of 14-3-3 Isoform Sigma In Complex With A		3e-15
3o8i_A	239	Structure Of 14-3-3 Isoform Sigma In Complex With A		1e-05
4hqw_A	236	Molecular Tweezers Modulate 14-3-3 Protein-protein		9e-16
4hqw_A	236	Molecular Tweezers Modulate 14-3-3 Protein-protein		3e-15
4hqw_A	236	Molecular Tweezers Modulate 14-3-3 Protein-protein		1e-05
3t0l_A	235	Small-Molecule Inhibitors Of 14-3-3 Protein-Protein		9e-16
3t0l_A	235	Small-Molecule Inhibitors Of 14-3-3 Protein-Protein		3e-15
3t0l_A	235	Small-Molecule Inhibitors Of 14-3-3 Protein-Protein		1e-05
4dat_A	234	Structure Of 14-3-3 Sigma In Complex With Padi6 14-		9e-16
4dat_A	234	Structure Of 14-3-3 Sigma In Complex With Padi6 14-		3e-15
4dat_A	234	Structure Of 14-3-3 Sigma In Complex With Padi6 14-		1e-05
3lw1_A	253	Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptid		9e-16
3lw1_A	253	Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptid		2e-15
3lw1_A	253	Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptid		1e-05
1ywt_A	248	Crystal Structure Of The Human Sigma Isoform Of 14-		1e-15
1ywt_A	248	Crystal Structure Of The Human Sigma Isoform Of 14-		3e-15
1ywt_A	248	Crystal Structure Of The Human Sigma Isoform Of 14-		2e-05
2npm_A	260	Crystal Structure Of Cryptosporidium Parvum 14-3-3		3e-13

>pdb|2V7D|A Chain A, 14-3-3 Protein Zeta In Complex With Thr758 Phosphorylated Integrin Beta2 Peptide Length = 247

Iteration: 1
 Score =  103 bits (256), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 137 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 194
Query: 65  K 65
           K
Sbjct: 195 K 195

>pdb|2V7D|A Chain A, 14-3-3 Protein Zeta In Complex With Thr758 Phosphorylated Integrin Beta2 Peptide Length = 247

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 49/54 (90%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
            +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 142 GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 195

>pdb|2V7D|A Chain A, 14-3-3 Protein Zeta In Complex With Thr758 Phosphorylated Integrin Beta2 Peptide Length = 247

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S +K ELVQ+AKLAEQAERYDDMAA MK+VTE G E
Sbjct: 2   SMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAE 37

>pdb|2C1J|A Chain A, Molecular Basis For The Recognition Of Phosphorylated And Phosphoacetylated Histone H3 By 14-3-3 Length = 258

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 148 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 205
Query: 65  K 65
           K
Sbjct: 206 K 206

>pdb|2C1J|A Chain A, Molecular Basis For The Recognition Of Phosphorylated And Phosphoacetylated Histone H3 By 14-3-3 Length = 258

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 49/54 (90%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
            +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 153 GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 206

>pdb|2C1J|A Chain A, Molecular Basis For The Recognition Of Phosphorylated And Phosphoacetylated Histone H3 By 14-3-3 Length = 258

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDDMAA MK+VTE G E
Sbjct: 15  DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAE 48

>pdb|1A38|A Chain A, 14-3-3 Protein Zeta Bound To R18 Peptide Length = 245

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 135 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192
Query: 65  K 65
           K
Sbjct: 193 K 193

>pdb|1A38|A Chain A, 14-3-3 Protein Zeta Bound To R18 Peptide Length = 245

Iteration: 1
 Score = 96.7 bits (239), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 49/54 (90%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
            +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 140 GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 193

>pdb|1A38|A Chain A, 14-3-3 Protein Zeta Bound To R18 Peptide Length = 245

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDDMAA MK+VTE G E
Sbjct: 2   DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAE 35

>pdb|3RDH|A Chain A, X-Ray Induced Covalent Inhibition Of 14-3-3 Length = 248

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 138 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 195
Query: 65  K 65
           K
Sbjct: 196 K 196

>pdb|3RDH|A Chain A, X-Ray Induced Covalent Inhibition Of 14-3-3 Length = 248

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 49/54 (90%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
            +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 143 GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 196

>pdb|3RDH|A Chain A, X-Ray Induced Covalent Inhibition Of 14-3-3 Length = 248

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDDMAA MK+VTE G E
Sbjct: 5   DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAE 38

>pdb|4FJ3|A Chain A, 14-3-3 Isoform Zeta In Complex With A Diphoyphorylated C-Raf Peptide Length = 235

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 140 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 197
Query: 65  K 65
           K
Sbjct: 198 K 198

>pdb|4FJ3|A Chain A, 14-3-3 Isoform Zeta In Complex With A Diphoyphorylated C-Raf Peptide Length = 235

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 49/54 (90%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
            +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 145 GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 198

>pdb|4FJ3|A Chain A, 14-3-3 Isoform Zeta In Complex With A Diphoyphorylated C-Raf Peptide Length = 235

Iteration: 1
 Score = 57.0 bits (136), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 31/36 (86%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S +K ELVQ+AKLAEQAERYDDMAA MK+VTE G E
Sbjct: 5   SMDKNELVQKAKLAEQAERYDDMAACMKSVTEQGAE 40

>pdb|2O02|A Chain A, Phosphorylation Independent Interactions Between 14-3-3 And Exoenzyme S: From Structure To Pathogenesis Length = 230

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 54/61 (88%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 135 GDDKK--GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 192
Query: 65  K 65
           K
Sbjct: 193 K 193

>pdb|2O02|A Chain A, Phosphorylation Independent Interactions Between 14-3-3 And Exoenzyme S: From Structure To Pathogenesis Length = 230

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 49/54 (90%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
            +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 140 GIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 193

>pdb|2O02|A Chain A, Phosphorylation Independent Interactions Between 14-3-3 And Exoenzyme S: From Structure To Pathogenesis Length = 230

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 30/34 (88%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDDMAA MK+VTE G E
Sbjct: 2   DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAE 35

>pdb|2BQ0|A Chain A, 14-3-3 Protein Beta (Human) Length = 245

Iteration: 1
 Score =  100 bits (250), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 52/61 (85%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD  Q    V +SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 137 GDNKQ--TTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 194
Query: 65  K 65
           K
Sbjct: 195 K 195

>pdb|2BQ0|A Chain A, 14-3-3 Protein Beta (Human) Length = 245

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 48/54 (88%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
             V +SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 142 TTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 195

>pdb|2BQ0|A Chain A, 14-3-3 Protein Beta (Human) Length = 245

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDDMAAAMKAVTE G E
Sbjct: 4   DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHE 37

>pdb|4GNT|A Chain A, Complex Of Chrebp And 14-3-3beta Length = 245

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 49/54 (90%)
Query: 12  AVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAK 65
             V +SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LAK
Sbjct: 142 TTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 195

>pdb|4GNT|A Chain A, Complex Of Chrebp And 14-3-3beta Length = 245

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 41/54 (75%), Positives = 48/54 (88%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
             V +SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 142 TTVSNSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 195

>pdb|4GNT|A Chain A, Complex Of Chrebp And 14-3-3beta Length = 245

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/34 (85%), Positives = 31/34 (91%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDDMAAAMKAVTE G E
Sbjct: 4   DKSELVQKAKLAEQAERYDDMAAAMKAVTEQGHE 37

>pdb|4DNK|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN 5- Monooxygenase Activation Protein, Beta Polypeptide (Ywhab) From Homo Sapiens At 2.20 A Resolution. Length = 247

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 51/61 (83%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD  Q    V +SQ+AYQ+AFEISK + QPTHPIRLGLALNFSVFYYEILNSP+KAC LA
Sbjct: 138 GDNKQ--TTVSNSQQAYQEAFEISKKEXQPTHPIRLGLALNFSVFYYEILNSPEKACSLA 195
Query: 65  K 65
           K
Sbjct: 196 K 196

>pdb|4DNK|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN 5- Monooxygenase Activation Protein, Beta Polypeptide (Ywhab) From Homo Sapiens At 2.20 A Resolution. Length = 247

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 40/54 (74%), Positives = 47/54 (87%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
             V +SQ+AYQEAF+I+K + QPTHPIRLGLALNFSVFYYEI+NSP +AC LAK
Sbjct: 143 TTVSNSQQAYQEAFEISKKEXQPTHPIRLGLALNFSVFYYEILNSPEKACSLAK 196

>pdb|4DNK|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN 5- Monooxygenase Activation Protein, Beta Polypeptide (Ywhab) From Homo Sapiens At 2.20 A Resolution. Length = 247

Iteration: 1
 Score = 44.3 bits (103), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 29/34 (85%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDD AAA KAVTE G E
Sbjct: 5   DKSELVQKAKLAEQAERYDDXAAAXKAVTEQGHE 38

>pdb|2BTP|A Chain A, 14-3-3 Protein Theta (Human) Complexed To Peptide Length = 256

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/61 (70%), Positives = 53/61 (86%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ ++   +D+SQ AYQ+AF+ISK +MQPTHPIRLGLALNFSVFYYEILN+P+ AC LA
Sbjct: 157 GDDRKQ--TIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLA 214
Query: 65  K 65
           K
Sbjct: 215 K 215

>pdb|2BTP|A Chain A, 14-3-3 Protein Theta (Human) Complexed To Peptide Length = 256

Iteration: 1
 Score = 93.2 bits (230), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 47/53 (88%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
            +++SQ AYQEAFDI+K +MQPTHPIRLGLALNFSVFYYEI+N+P  AC LAK
Sbjct: 163 TIDNSQGAYQEAFDISKKEMQPTHPIRLGLALNFSVFYYEILNNPELACTLAK 215

>pdb|2BTP|A Chain A, 14-3-3 Protein Theta (Human) Complexed To Peptide Length = 256

Iteration: 1
 Score = 57.8 bits (138), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/36 (77%), Positives = 30/36 (83%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S EK EL+Q+AKLAEQAERYDDMA  MKAVTE G E
Sbjct: 22  SMEKTELIQKAKLAEQAERYDDMATCMKAVTEQGAE 57

>pdb|2C63|A Chain A, 14-3-3 Protein Eta (Human) Complexed To Peptide Length = 247

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 52/58 (89%)
Query: 9   QEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
           ++ +VV+ S+ AY++AFEISK +MQPTHPIRLGLALNFSVFYYEI N+P++AC LAKQ
Sbjct: 143 KKNSVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQ 200

>pdb|2C63|A Chain A, 14-3-3 Protein Eta (Human) Complexed To Peptide Length = 247

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 47/96 (48%), Positives = 66/96 (68%), Gaps = 7/96 (7%)
Query: 93  AVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSC 152
           +VVE S+ AY+EAF+I+K +MQPTHPIRLGLALNFSVFYYEI N+P +AC LAKQ     
Sbjct: 146 SVVEASEAAYKEAFEISKEQMQPTHPIRLGLALNFSVFYYEIQNAPEQACLLAKQAFDDA 205
Query: 153 IGA----SRDTKRSVCLLCEIFH---TMSSSGEKEE 181
           I      + D+ +   L+ ++     T+ +S +++E
Sbjct: 206 IAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDE 241

>pdb|2C63|A Chain A, 14-3-3 Protein Eta (Human) Complexed To Peptide Length = 247

Iteration: 1
 Score = 57.4 bits (137), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/33 (78%), Positives = 32/33 (96%)
Query: 175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTE 207
           S G++E+L+QRA+LAEQAERYDDMA+AMKAVTE
Sbjct: 1   SMGDREQLLQRARLAEQAERYDDMASAMKAVTE 33

>pdb|3UZD|A Chain A, Crystal Structure Of 14-3-3 Gamma Length = 248

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           VVE S+KAY EA +I+K  MQPTHPIRLGLALN+SVFYYEI N+P +ACHLAK
Sbjct: 146 VVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAK 198

>pdb|3UZD|A Chain A, Crystal Structure Of 14-3-3 Gamma Length = 248

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 29/30 (96%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTE 207
           ++E+LVQ+A+LAEQAERYDDMAAAMK VTE
Sbjct: 3   DREQLVQKARLAEQAERYDDMAAAMKNVTE 32

>pdb|2B05|A Chain A, Crystal Structure Of 14-3-3 Gamma In Complex With A Phosphoserine Peptide Length = 246

Iteration: 1
 Score = 90.5 bits (223), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 40/53 (75%), Positives = 46/53 (86%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           VVE S+KAY EA +I+K  MQPTHPIRLGLALN+SVFYYEI N+P +ACHLAK
Sbjct: 145 VVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAK 197

>pdb|2B05|A Chain A, Crystal Structure Of 14-3-3 Gamma In Complex With A Phosphoserine Peptide Length = 246

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/30 (80%), Positives = 29/30 (96%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTE 207
           ++E+LVQ+A+LAEQAERYDDMAAAMK VTE
Sbjct: 2   DREQLVQKARLAEQAERYDDMAAAMKNVTE 31

>pdb|4E2E|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN 5- Monooxygenase Activation Protein, Gamma Polypeptide (Ywhag) From Homo Sapiens At 2.25 A Resolution Length = 248

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 39/53 (73%), Positives = 45/53 (84%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           VVE S+KAY EA +I+K   QPTHPIRLGLALN+SVFYYEI N+P +ACHLAK
Sbjct: 147 VVESSEKAYSEAHEISKEHXQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAK 199

>pdb|4E2E|A Chain A, Crystal Structure Of A Tyrosine 3-MonooxygenaseTRYPTOPHAN 5- Monooxygenase Activation Protein, Gamma Polypeptide (Ywhag) From Homo Sapiens At 2.25 A Resolution Length = 248

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 22/30 (73%), Positives = 27/30 (90%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTE 207
           ++E+LVQ+A+LAEQAERYDD AAA K VTE
Sbjct: 4   DREQLVQKARLAEQAERYDDXAAAXKNVTE 33

>pdb|3M50|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY EPIBESTAT Length = 240

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G E +E A  + +  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC LA
Sbjct: 144 GAERKEAA--ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLA 201
Query: 65  KQ 66
           KQ
Sbjct: 202 KQ 203

>pdb|3M50|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY EPIBESTAT Length = 240

Iteration: 1
 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           E +  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQ
Sbjct: 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203

>pdb|2O98|A Chain A, Structure Of The 14-3-3 H+-Atpase Plant Complex Length = 242

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G E +E A  + +  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC LA
Sbjct: 144 GAERKEAA--ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLA 201
Query: 65  KQ 66
           KQ
Sbjct: 202 KQ 203

>pdb|2O98|A Chain A, Structure Of The 14-3-3 H+-Atpase Plant Complex Length = 242

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           E +  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQ
Sbjct: 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203

>pdb|1O9C|A Chain A, Structural View Of A Fungal Toxin Acting On A 14-3-3 Regulatory Complex Length = 260

Iteration: 1
 Score = 83.6 bits (205), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 37/52 (71%), Positives = 44/52 (84%)
Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           E +  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQ
Sbjct: 152 ESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 203

>pdb|3SMO|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin J Aglycone Length = 235

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PTHPIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 141 GDDKKR--IIDSARSAYQEAMDISKKEMPPTHPIRLGLALNFSVFHYEIANSPEEAISLA 198
Query: 65  K 65
           K
Sbjct: 199 K 199

>pdb|3SMO|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin J Aglycone Length = 235

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PTHPIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 147 IIDSARSAYQEAMDISKKEMPPTHPIRLGLALNFSVFHYEIANSPEEAISLAK 199

>pdb|3SMO|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN COMPLEX WITH Task-3 Peptide And Stabilizer Fusicoccin J Aglycone Length = 235

Iteration: 1
 Score = 47.4 bits (111), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTF 219
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E  +  +  
Sbjct: 4   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSVEERNL 47

>pdb|3P1R|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN COMPLEX WITH Task-3 Peptide Length = 236

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PTHPIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 142 GDDKKR--IIDSARSAYQEAMDISKKEMPPTHPIRLGLALNFSVFHYEIANSPEEAISLA 199
Query: 65  K 65
           K
Sbjct: 200 K 200

>pdb|3P1R|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN COMPLEX WITH Task-3 Peptide Length = 236

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PTHPIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 148 IIDSARSAYQEAMDISKKEMPPTHPIRLGLALNFSVFHYEIANSPEEAISLAK 200

>pdb|3P1R|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38vN166H IN COMPLEX WITH Task-3 Peptide Length = 236

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTF 219
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E  +  +  
Sbjct: 5   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEELSVEERNL 48

>pdb|3AXY|C Chain C, Structure Of Florigen Activation Complex Consisting Of Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd Homolog Osfd1 Length = 240

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/62 (64%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G E +E A  + +  AY+ A +I+ + + PTHPIRLGLALNFSVFYYEILNSPDKAC LA
Sbjct: 144 GAERKEAA--ESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKACNLA 201
Query: 65  KQ 66
           KQ
Sbjct: 202 KQ 203

>pdb|3AXY|C Chain C, Structure Of Florigen Activation Complex Consisting Of Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd Homolog Osfd1 Length = 240

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           E +  AY+ A DIA + + PTHPIRLGLALNFSVFYYEI+NSP +AC+LAKQ
Sbjct: 152 ESTMVAYKAAQDIALADLAPTHPIRLGLALNFSVFYYEILNSPDKACNLAKQ 203

>pdb|3P1P|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN COMPLEX WITH Task-3 Peptide Length = 236

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PTHPIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 142 GDDKKR--IIDSARSAYQEAMDISKKEMPPTHPIRLGLALNFSVFHYEIANSPEEAISLA 199
Query: 65  K 65
           K
Sbjct: 200 K 200

>pdb|3P1P|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN COMPLEX WITH Task-3 Peptide Length = 236

Iteration: 1
 Score = 81.3 bits (199), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PTHPIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 148 IIDSARSAYQEAMDISKKEMPPTHPIRLGLALNFSVFHYEIANSPEEAISLAK 200

>pdb|3P1P|A Chain A, Crystal Structure Of Human 14-3-3 Sigma C38nN166H IN COMPLEX WITH Task-3 Peptide Length = 236

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 5   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 40

>pdb|2BR9|A Chain A, 14-3-3 Protein Epsilon (Human) Complexed To Peptide Length = 234

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 51/61 (83%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G++ +E A  ++S  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LA
Sbjct: 139 GNDRKEAA--ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLA 196
Query: 65  K 65
           K
Sbjct: 197 K 197

>pdb|2BR9|A Chain A, 14-3-3 Protein Epsilon (Human) Complexed To Peptide Length = 234

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           E+S  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAK
Sbjct: 147 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAK 197

>pdb|2BR9|A Chain A, 14-3-3 Protein Epsilon (Human) Complexed To Peptide Length = 234

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTF 219
           S  ++E+LV +AKLAEQAERYD+M  +MK V    VE  +  +  
Sbjct: 1   SMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNL 45

>pdb|3UAL|A Chain A, Crystal Structure Of 14-3-3 Epsilon With Mlf1 Peptide Length = 232

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 51/61 (83%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G++ +E A  ++S  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LA
Sbjct: 138 GNDRKEAA--ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLA 195
Query: 65  K 65
           K
Sbjct: 196 K 196

>pdb|3UAL|A Chain A, Crystal Structure Of 14-3-3 Epsilon With Mlf1 Peptide Length = 232

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           E+S  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAK
Sbjct: 146 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAK 196

>pdb|3UAL|A Chain A, Crystal Structure Of 14-3-3 Epsilon With Mlf1 Peptide Length = 232

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/42 (47%), Positives = 28/42 (66%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYSQTF 219
           ++E+LV +AKLAEQAERYD+M  +MK V    VE  +  +  
Sbjct: 3   DREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTVEERNL 44

>pdb|3UBW|A Chain A, Complex Of 14-3-3 Isoform Epsilon, A Mlf1 Phosphopeptide And A Small Fragment Hit From A Fbdd Screen Length = 261

Iteration: 1
 Score = 82.4 bits (202), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 51/61 (83%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G++ +E A  ++S  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LA
Sbjct: 165 GNDRKEAA--ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLA 222
Query: 65  K 65
           K
Sbjct: 223 K 223

>pdb|3UBW|A Chain A, Complex Of 14-3-3 Isoform Epsilon, A Mlf1 Phosphopeptide And A Small Fragment Hit From A Fbdd Screen Length = 261

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%)
Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           E+S  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAK
Sbjct: 173 ENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAK 223

>pdb|3UBW|A Chain A, Complex Of 14-3-3 Isoform Epsilon, A Mlf1 Phosphopeptide And A Small Fragment Hit From A Fbdd Screen Length = 261

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/42 (52%), Positives = 29/42 (69%)
Query: 173 MSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGI 214
           M S  ++E+LV +AKLAEQAERYD+M  +MK V    VE  +
Sbjct: 25  MGSMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTV 66

>pdb|4DX0|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A PYRAZOLE Derivative Length = 243

Iteration: 1
 Score = 80.5 bits (197), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%), Gaps = 2/62 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           G E +E A  +++  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNS D+AC LA
Sbjct: 147 GAERKEAA--ENTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSSDRACNLA 204
Query: 65  KQ 66
           KQ
Sbjct: 205 KQ 206

>pdb|4DX0|A Chain A, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A PYRAZOLE Derivative Length = 243

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/52 (69%), Positives = 44/52 (84%)
Query: 96  EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
           E++  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NS  RAC+LAKQ
Sbjct: 155 ENTLLAYKSAQDIALAELAPTHPIRLGLALNFSVFYYEILNSSDRACNLAKQ 206

>pdb|3P1N|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With Task-3 Peptide Length = 235

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 141 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 198
Query: 65  K 65
           K
Sbjct: 199 K 199

>pdb|3P1N|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With Task-3 Peptide Length = 235

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 147 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 199

>pdb|3P1N|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With Task-3 Peptide Length = 235

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 4   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 39

>pdb|3U9X|A Chain A, Covalent Attachment Of Pyridoxal-Phosphate Derivatives To 14-3-3 Proteins Length = 235

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 141 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 198
Query: 65  K 65
           K
Sbjct: 199 K 199

>pdb|3U9X|A Chain A, Covalent Attachment Of Pyridoxal-Phosphate Derivatives To 14-3-3 Proteins Length = 235

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 147 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 199

>pdb|3U9X|A Chain A, Covalent Attachment Of Pyridoxal-Phosphate Derivatives To 14-3-3 Proteins Length = 235

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 4   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 39

>pdb|3IQJ|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With Raf1 Peptide (10mer) Length = 236

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 142 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 199
Query: 65  K 65
           K
Sbjct: 200 K 200

>pdb|3IQJ|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With Raf1 Peptide (10mer) Length = 236

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 148 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 200

>pdb|3IQJ|A Chain A, Crystal Structure Of Human 14-3-3 Sigma In Complex With Raf1 Peptide (10mer) Length = 236

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 5   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 40

>pdb|3O8I|A Chain A, Structure Of 14-3-3 Isoform Sigma In Complex With A C-Raf1 Peptide And A Stabilizing Small Molecule Fragment Length = 239

Iteration: 1
 Score = 80.1 bits (196), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 145 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 202
Query: 65  K 65
           K
Sbjct: 203 K 203

>pdb|3O8I|A Chain A, Structure Of 14-3-3 Isoform Sigma In Complex With A C-Raf1 Peptide And A Stabilizing Small Molecule Fragment Length = 239

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 151 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 203

>pdb|3O8I|A Chain A, Structure Of 14-3-3 Isoform Sigma In Complex With A C-Raf1 Peptide And A Stabilizing Small Molecule Fragment Length = 239

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/41 (60%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 173 MSSSG--EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           M S G  E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 3   MGSMGSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 43

>pdb|4HQW|A Chain A, Molecular Tweezers Modulate 14-3-3 Protein-protein Interactions Length = 236

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 142 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 199
Query: 65  K 65
           K
Sbjct: 200 K 200

>pdb|4HQW|A Chain A, Molecular Tweezers Modulate 14-3-3 Protein-protein Interactions Length = 236

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 148 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 200

>pdb|4HQW|A Chain A, Molecular Tweezers Modulate 14-3-3 Protein-protein Interactions Length = 236

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 5   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 40

>pdb|3T0L|A Chain A, Small-Molecule Inhibitors Of 14-3-3 Protein-Protein Interactions From Virtual Screening Length = 235

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 141 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 198
Query: 65  K 65
           K
Sbjct: 199 K 199

>pdb|3T0L|A Chain A, Small-Molecule Inhibitors Of 14-3-3 Protein-Protein Interactions From Virtual Screening Length = 235

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 147 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 199

>pdb|3T0L|A Chain A, Small-Molecule Inhibitors Of 14-3-3 Protein-Protein Interactions From Virtual Screening Length = 235

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 4   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 39

>pdb|4DAT|A Chain A, Structure Of 14-3-3 Sigma In Complex With Padi6 14-3-3 Binding Motif Ii Length = 234

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 140 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 197
Query: 65  K 65
           K
Sbjct: 198 K 198

>pdb|4DAT|A Chain A, Structure Of 14-3-3 Sigma In Complex With Padi6 14-3-3 Binding Motif Ii Length = 234

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 146 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 198

>pdb|4DAT|A Chain A, Structure Of 14-3-3 Sigma In Complex With Padi6 14-3-3 Binding Motif Ii Length = 234

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/36 (63%), Positives = 27/36 (75%)
Query: 176 SGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           S E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 3   SMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 38

>pdb|3LW1|A Chain A, Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptide Length = 253

Iteration: 1
 Score = 80.1 bits (196), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 142 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 199
Query: 65  K 65
           K
Sbjct: 200 K 200

>pdb|3LW1|A Chain A, Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptide Length = 253

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 148 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 200

>pdb|3LW1|A Chain A, Binary Complex Of 14-3-3 Sigma And P53 Pt387-Peptide Length = 253

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/37 (62%), Positives = 27/37 (72%)
Query: 175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
            S E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 4   GSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 40

>pdb|1YWT|A Chain A, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In Complex With A Mode-1 Phosphopeptide Length = 248

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 2/61 (3%)
Query: 5   GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLA 64
           GD+ +   ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A  LA
Sbjct: 137 GDDKKR--IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLA 194
Query: 65  K 65
           K
Sbjct: 195 K 195

>pdb|1YWT|A Chain A, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In Complex With A Mode-1 Phosphopeptide Length = 248

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 34/53 (64%), Positives = 43/53 (81%)
Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
           +++ ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A  LAK
Sbjct: 143 IIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAK 195

>pdb|1YWT|A Chain A, Crystal Structure Of The Human Sigma Isoform Of 14-3-3 In Complex With A Mode-1 Phosphopeptide Length = 248

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           E+  L+Q+AKLAEQAERY+DMAA MK   E G E
Sbjct: 2   ERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEE 35

>pdb|2NPM|A Chain A, Crystal Structure Of Cryptosporidium Parvum 14-3-3 Protein In Complex With Peptide Length = 260

Iteration: 1
 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 51/80 (63%), Gaps = 7/80 (8%)
Query: 73  CFYFFLMND-----PEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNF 127
            FYF +  D      EFS       +  ED+ KAY++A  +AK  ++PTHPIRLGLALNF
Sbjct: 146 VFYFKMKGDYHRYISEFST-GDSKQSSAEDALKAYKDATVVAKD-LEPTHPIRLGLALNF 203
Query: 128 SVFYYEIINSPARACHLAKQ 147
           SVF+YEI+N P  A  +AK+
Sbjct: 204 SVFHYEILNEPRAAIDMAKE 223

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	220
2o8p_A	227	14-3-3 domain containing protein; signaling protei	6e-25
2o8p_A	227	14-3-3 domain containing protein; signaling protei	2e-24
2o8p_A	227	14-3-3 domain containing protein; signaling protei	6e-12
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	2e-16
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	1e-14
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	1e-11
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	4e-16
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	7e-16
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	5e-10
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	9e-16
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	2e-15
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	2e-11
2npm_A	260	14-3-3 domain containing protein; cell regulator p	2e-15
2npm_A	260	14-3-3 domain containing protein; cell regulator p	8e-14
2npm_A	260	14-3-3 domain containing protein; cell regulator p	1e-10
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	7e-15
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	1e-14
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	6e-11
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	2e-14
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	3e-14
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	7e-10
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	9e-13
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	9e-13
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	4e-10

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 Length = 227

 Score = 97.0 bits (241), Expect = 6e-25
 Identities = 12/57 (21%), Positives = 22/57 (38%)

Query: 90  CSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAK 146
             L  +EDS+K +Q+AF +          + LG   N +    E      +  ++  
Sbjct: 136 FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLN 192

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 Length = 227

 Score = 95.1 bits (236), Expect = 2e-24
 Identities = 10/54 (18%), Positives = 19/54 (35%)

Query: 12  AVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAK 65
             ++DS+K +Q AF +          + LG   N +    E      +   +  
Sbjct: 139 CSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLN 192

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 Length = 227

 Score = 61.9 bits (150), Expect = 6e-12
 Identities = 8/36 (22%), Positives = 15/36 (41%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYG 213
           E+     RA++ E    +D M  A+K++        
Sbjct: 5   ERLLQKYRAQVFEWGGCFDKMFEALKSLIYLSEFEN 40

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3p1s_A* 3p1r_A* 3p1q_A* 3p1p_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A 1a38_A 1a4o_A* 1ib1_A* ... Length = 236

 Score = 74.5 bits (182), Expect = 2e-16
 Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 7/126 (5%)

Query: 28  SKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND-----P 82
           S+ K       R  +          +L   D    + +   A    FY  +  D      
Sbjct: 79  SEEKGPEVREYREKVETELQGVCDTVLGLLDSHL-IKEAGDAESRVFYLKMKGDYYRYLA 137

Query: 83  EFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARAC 142
           E +        + + ++ AYQEA DI+K +M PT+PIRLGLALNFSVF+YEI NSP  A 
Sbjct: 138 EVATGDDKKRII-DSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAI 196

Query: 143 HLAKQV 148
            LAK  
Sbjct: 197 SLAKTT 202

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3p1s_A* 3p1r_A* 3p1q_A* 3p1p_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A 1a38_A 1a4o_A* 1ib1_A* ... Length = 236

 Score = 69.5 bits (169), Expect = 1e-14
 Identities = 34/67 (50%), Positives = 48/67 (71%)

Query: 1   MSGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKA 60
           ++       +  ++D ++ AYQ+A +ISK +M PT+PIRLGLALNFSVF+YEI NSP++A
Sbjct: 136 LAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEA 195

Query: 61  CQLAKQV 67
             LAK  
Sbjct: 196 ISLAKTT 202

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3p1s_A* 3p1r_A* 3p1q_A* 3p1p_A* 1ywt_A* 1yz5_A 2v7d_A* 2o02_A 1qja_A* 1a37_A 1a38_A 1a4o_A* 1ib1_A* ... Length = 236

 Score = 61.4 bits (148), Expect = 1e-11
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEY 212
            S E+  L+Q+AKLAEQAERY+DMAA MK   E G E 
Sbjct: 4   GSMERASLIQKAKLAEQAERYEDMAAFMKGAVEKGEEL 41

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* Length = 234

 Score = 73.4 bits (179), Expect = 4e-16
 Identities = 38/60 (63%), Positives = 44/60 (73%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCI 153
             E+S  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAK      I
Sbjct: 145 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAI 204

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* Length = 234

 Score = 72.6 bits (177), Expect = 7e-16
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 13  VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV 67
             ++S  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LAK  
Sbjct: 145 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 199

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* Length = 234

 Score = 56.4 bits (135), Expect = 5e-10
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGI 214
           S  ++E+LV +AKLAEQAERYD+M  +MK V    VE  +
Sbjct: 1   SMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTV 40

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* Length = 248

 Score = 72.9 bits (178), Expect = 9e-16
 Identities = 44/81 (54%), Positives = 52/81 (64%), Gaps = 6/81 (7%)

Query: 73  CFYFFLMNDPEFSPLFPCS-----LAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNF 127
            FY  +  D     L   +       VVE S+KAY EA +I+K  MQPTHPIRLGLALN+
Sbjct: 121 VFYLKMKGDYYR-YLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNY 179

Query: 128 SVFYYEIINSPARACHLAKQV 148
           SVFYYEI N+P +ACHLAK  
Sbjct: 180 SVFYYEIQNAPEQACHLAKTA 200

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* Length = 248

 Score = 71.4 bits (174), Expect = 2e-15
 Identities = 39/62 (62%), Positives = 47/62 (75%)

Query: 6   DEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAK 65
              +   VV+ S+KAY +A EISK  MQPTHPIRLGLALN+SVFYYEI N+P++AC LAK
Sbjct: 139 TGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAK 198

Query: 66  QV 67
             
Sbjct: 199 TA 200

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* Length = 248

 Score = 60.2 bits (145), Expect = 2e-11
 Identities = 24/34 (70%), Positives = 29/34 (85%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           ++E+LVQ+A+LAEQAERYDDMAAAMK VTE    
Sbjct: 3   DREQLVQKARLAEQAERYDDMAAAMKNVTELNEP 36

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} Length = 260

 Score = 71.8 bits (175), Expect = 2e-15
 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 8/131 (6%)

Query: 28  SKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDP----- 82
           ++   +     R  +    +    +IL   DK   +          FYF +  D      
Sbjct: 102 AEDASKMCGKYRSKVEAELTDICNDILTMLDKHL-IPTATSPDSKVFYFKMKGDYHRYIS 160

Query: 83  EFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARAC 142
           EFS       +  ED+ KAY++A  +AK  ++PTHPIRLGLALNFSVF+YEI+N P  A 
Sbjct: 161 EFSTGDSKQ-SSAEDALKAYKDATVVAK-DLEPTHPIRLGLALNFSVFHYEILNEPRAAI 218

Query: 143 HLAKQVKYSCI 153
            +AK+     I
Sbjct: 219 DMAKEAFEMAI 229

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} Length = 260

 Score = 67.6 bits (164), Expect = 8e-14
 Identities = 31/56 (55%), Positives = 41/56 (73%), Gaps = 1/56 (1%)

Query: 13  VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC 68
             +D+ KAY+ A  ++K  ++PTHPIRLGLALNFSVF+YEILN P  A  +AK+  
Sbjct: 171 SAEDALKAYKDATVVAK-DLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAF 225

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} Length = 260

 Score = 58.7 bits (141), Expect = 1e-10
 Identities = 21/43 (48%), Positives = 24/43 (55%)

Query: 174 SSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGIYS 216
            S   +E  V  AKLAEQAERYD+MA  MK V E   E    +
Sbjct: 23  DSVNARESNVYMAKLAEQAERYDEMAKYMKDVVEARQESEELT 65

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} Length = 261

 Score = 70.7 bits (172), Expect = 7e-15
 Identities = 37/55 (67%), Positives = 43/55 (78%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148
             E+S  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC LAK  
Sbjct: 171 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 225

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} Length = 261

 Score = 69.9 bits (170), Expect = 1e-14
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 13  VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV 67
             ++S  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC+LAK  
Sbjct: 171 AAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAA 225

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} Length = 261

 Score = 59.5 bits (143), Expect = 6e-11
 Identities = 22/43 (51%), Positives = 29/43 (67%)

Query: 172 TMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVEYGI 214
            M S  ++E+LV +AKLAEQAERYD+M  +MK V    VE  +
Sbjct: 24  AMGSMDDREDLVYQAKLAEQAERYDEMVESMKKVAGMDVELTV 66

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* Length = 260

 Score = 69.5 bits (169), Expect = 2e-14
 Identities = 37/55 (67%), Positives = 44/55 (80%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148
             E +  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQ 
Sbjct: 150 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQA 204

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* Length = 260

 Score = 68.8 bits (167), Expect = 3e-14
 Identities = 35/67 (52%), Positives = 47/67 (70%)

Query: 1   MSGDGDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKA 60
           ++      +     + +  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+A
Sbjct: 138 LAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRA 197

Query: 61  CQLAKQV 67
           C LAKQ 
Sbjct: 198 CNLAKQA 204

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* Length = 260

 Score = 56.4 bits (135), Expect = 7e-10
 Identities = 16/36 (44%), Positives = 23/36 (63%)

Query: 174 SSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETG 209
            +   +EE V  AKLAEQAERY++M   M+ V+ + 
Sbjct: 3   VAPTAREENVYMAKLAEQAERYEEMVEFMEKVSNSL 38

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A* Length = 268

 Score = 64.9 bits (157), Expect = 9e-13
 Identities = 12/57 (21%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQ--PTHPIRLGLALNFSVFYYEIINSPARACHLAKQV 148
            ++ + + Y++A    +S ++  P+ P+ L   LN+++  Y+++ +P  A   A + 
Sbjct: 167 CIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRA 223

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A* Length = 268

 Score = 64.9 bits (157), Expect = 9e-13
 Identities = 13/57 (22%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 13  VVDDSQKAYQQAFEISKSKMQ--PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV 67
            +  + + Y+ A +  +S ++  P+ P+ L   LN+++  Y++L +P+ A + A + 
Sbjct: 167 CIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRA 223

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A* Length = 268

 Score = 57.2 bits (137), Expect = 4e-10
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 170 FHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET 208
                 + +  E   RAKLA+    Y D+   +   ++ 
Sbjct: 20  QGITEKNMKLSEGAYRAKLADMVGNYKDVIKVLTESSDF 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	220
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	100.0
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	100.0
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	100.0
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	100.0
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	100.0
2npm_A	260	14-3-3 domain containing protein; cell regulator p	100.0
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	100.0
2o8p_A	227	14-3-3 domain containing protein; signaling protei	99.97
3iqu_A	236	14-3-3 protein sigma; signal transuction, nucleus,	99.9
3uzd_A	248	14-3-3 protein gamma; structural genomics, SGC, st	99.9
3ubw_A	261	14-3-3E, 14-3-3 protein epsilon; adapter protein,	99.89
1o9d_A	260	14-3-3-like protein C; protein-binding, fusicoccin	99.89
2br9_A	234	14-3-3E, 14-3-3 protein epsilon; cell regulator pr	99.89
2npm_A	260	14-3-3 domain containing protein; cell regulator p	99.88
3efz_A	268	14-3-3 protein; 14-3-3, cell regulation, structura	99.88
2o8p_A	227	14-3-3 domain containing protein; signaling protei	99.86
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.92
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	97.76
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.74
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.33
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	97.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	96.72
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	96.71
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.44
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.41
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	96.25
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.23
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	96.13
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.08
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	96.07
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	95.86
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	95.83
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	95.8
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	95.62
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	95.34
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	95.28
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	95.27
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	94.99
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	94.88
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	94.79
4g1t_A	472	Interferon-induced protein with tetratricopeptide	94.36
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	94.27
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	94.04
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	94.03
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	93.95
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	92.05
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	92.04
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	91.7
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	91.67
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	91.55
3u4t_A	272	TPR repeat-containing protein; structural genomics	91.51
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	90.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	90.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	90.74
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	90.5
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	90.39
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	90.33
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	89.84
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	89.8
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	89.67
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	89.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	89.42
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	89.34
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	89.13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	89.07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	88.85
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	88.42
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	88.37
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	88.29
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	88.23
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	87.86
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	87.8
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	87.22
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	86.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	85.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	85.69
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	85.23
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	84.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	84.47
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	83.81
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	83.25
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	82.74
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	82.55
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	81.96
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	81.92
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	81.75
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	81.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	81.07
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	81.01

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=100.00  E-value=9.4e-37  Score=266.65  Aligned_cols=112  Identities=36%  Similarity=0.581  Sum_probs=106.4

Q ss_pred             chhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhccc
Q psy5989          45 NFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA  124 (220)
Q Consensus        45 N~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~  124 (220)
                      .--|||+.+.+|              +|||++++..|++       |++++++|++||++|.++|+++|||||||||||+
T Consensus       120 eskVFY~KmKGD--------------yyRYlAE~~~g~~-------r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLa  178 (236)
T 3iqu_A          120 ESRVFYLKMKGD--------------YYRYLAEVATGDD-------KKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLA  178 (236)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHHHCCSTT-------HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHHHHhhhh--------------HHHHHHHhcCchH-------HHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHH
Confidence            467999988876              9999999999988       9999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccc
Q psy5989         125 LNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSG  177 (220)
Q Consensus       125 LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s  177 (220)
                      ||||||||||+|+|++||++||+|||+||+++|    ++|+|+|+|||+|||+..+|
T Consensus       179 LNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~eld~l~eesykDstlImqLLRDNLtlW  235 (236)
T 3iqu_A          179 LNFSVFHYEIANSPEEAISLAKTTFDEAMADLHTLSEDSYKDSTLIMQLLRDNLTLW  235 (236)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHhcc
Confidence            999999999999999999999999999999997    78999999999999987665

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=100.00  E-value=8.7e-37  Score=268.50  Aligned_cols=114  Identities=41%  Similarity=0.678  Sum_probs=106.2

Q ss_pred             hhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccc
Q psy5989          46 FSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLAL  125 (220)
Q Consensus        46 ~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~L  125 (220)
                      --|||+.+.+|              +|||++++..|++       |++++++|++||+.|.++|+++|||||||||||+|
T Consensus       119 skVFY~KmKGD--------------yyRYlAE~~~g~~-------r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaL  177 (248)
T 3uzd_A          119 SKVFYLKMKGD--------------YYRYLAEVATGEK-------RATVVESSEKAYSEAHEISKEHMQPTHPIRLGLAL  177 (248)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHHhhhh--------------HHHHHHHhcCchH-------HHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHH
Confidence            46888877766              9999999999988       99999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccchhH
Q psy5989         126 NFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGEKE  180 (220)
Q Consensus       126 N~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~r~  180 (220)
                      |||||||||+|+|++||+|||+|||+||+++|    ++|+|+|+|||+|||+..+|..+
T Consensus       178 NfSVFyYEIln~~~~Ac~lAk~Afd~Ai~eld~l~eesykDstlImqLLRDNLtlWts~  236 (248)
T 3uzd_A          178 NYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSD  236 (248)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999998    78999999999999988777765

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=100.00  E-value=3.4e-36  Score=266.18  Aligned_cols=113  Identities=39%  Similarity=0.630  Sum_probs=107.1

Q ss_pred             chhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhccc
Q psy5989          45 NFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA  124 (220)
Q Consensus        45 N~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~  124 (220)
                      .-.|||+.+.+|              ++||++++..|++       |++++++|++||++|.++|+++|||||||||||+
T Consensus       143 EskVFY~KMKGD--------------YyRYlAE~~~g~~-------rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLa  201 (261)
T 3ubw_A          143 ESKVFYYKMKGD--------------YHRYLAEFATGND-------RKEAAENSLVAYKAASDIAMTELPPTHPIRLGLA  201 (261)
T ss_dssp             HHHHHHHHHHHH--------------HHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHHHHhhcc--------------HHHHHHhhcCchH-------HHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHH
Confidence            467999988877              9999999999988       9999999999999999999999999999999999


Q ss_pred             chhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccch
Q psy5989         125 LNFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGE  178 (220)
Q Consensus       125 LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~  178 (220)
                      ||||||||||+|+|++||+|||+|||+||+++|    ++|+|+|+|||+|||+..+|.
T Consensus       202 LNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~eLd~L~eesykDstlImQLLRDNLtlWt  259 (261)
T 3ubw_A          202 LNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWT  259 (261)
T ss_dssp             HHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccChhhhHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999997    789999999999999887664

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=100.00  E-value=6.4e-36  Score=264.59  Aligned_cols=114  Identities=39%  Similarity=0.623  Sum_probs=104.3

Q ss_pred             hhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccc
Q psy5989          46 FSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLAL  125 (220)
Q Consensus        46 ~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~L  125 (220)
                      -.|||+.+.+|              +|||++++..|++       |++++++|+++|+.|+++|+.+|||||||||||+|
T Consensus       123 skVFY~KMKGD--------------YyRYlaE~~~g~~-------r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaL  181 (260)
T 1o9d_A          123 SKVFYLKMKGD--------------YHRYLAEFKTGAE-------RKEAAESTLTAYKAAQDIATTELAPTHPIRLGLAL  181 (260)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHHHCCSHH-------HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hHHHHHHHhcc--------------HHHHHHHhcCchH-------HHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence            47999988876              9999999999987       99999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccchhH
Q psy5989         126 NFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGEKE  180 (220)
Q Consensus       126 N~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~r~  180 (220)
                      |||||||||+|+|++||.|||+|||+||+++|    ++|+|+|+|||+|||+..+|..+
T Consensus       182 NfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~EesykDstlImqLLRDNLtlWts~  240 (260)
T 1o9d_A          182 NFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD  240 (260)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHHHHHHHHhhhc
Confidence            99999999999999999999999999999997    88999999999999998888765

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=100.00  E-value=5.3e-36  Score=261.67  Aligned_cols=112  Identities=39%  Similarity=0.632  Sum_probs=105.2

Q ss_pred             hhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccc
Q psy5989          46 FSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLAL  125 (220)
Q Consensus        46 ~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~L  125 (220)
                      -.|||+.+.+|              +|||++++..|++       |++++++|+++|++|+++|+++|||||||||||+|
T Consensus       118 skVFy~KmKGD--------------yyRYlaE~~~g~~-------r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaL  176 (234)
T 2br9_A          118 SKVFYYKMKGD--------------YHRYLAEFATGND-------RKEAAENSLVAYKAASDIAMTELPPTHPIRLGLAL  176 (234)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hHHHHHHHhcc--------------HHHHHHHHcCchH-------HHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHH
Confidence            46888877766              9999999999877       99999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccch
Q psy5989         126 NFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGE  178 (220)
Q Consensus       126 N~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~  178 (220)
                      |||||||||+|+|++||.|||+|||+||+++|    ++|+|+|+|||+|||+..+|.
T Consensus       177 N~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~l~eesykDstlImqLLrDNLtlWt  233 (234)
T 2br9_A          177 NFSVFYYEILNSPDRACRLAKAAFDDAIAELDTLSEESYKDSTLIMQLLRDNLTLWT  233 (234)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGCCTTTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccChhhhHHHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999997    889999999999999876653

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=100.00  E-value=1.2e-35  Score=262.89  Aligned_cols=112  Identities=34%  Similarity=0.522  Sum_probs=106.1

Q ss_pred             hhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccc
Q psy5989          46 FSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLAL  125 (220)
Q Consensus        46 ~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~L  125 (220)
                      -.|||+.+.+|              +|||++++..|++       |++++++|++||++|+++| .+|||||||||||+|
T Consensus       144 skVFY~KMKGD--------------YyRYlaE~~~g~~-------r~~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaL  201 (260)
T 2npm_A          144 SKVFYFKMKGD--------------YHRYISEFSTGDS-------KQSSAEDALKAYKDATVVA-KDLEPTHPIRLGLAL  201 (260)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHHHCCHHH-------HHHHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHH
T ss_pred             HHHHHHHHhcc--------------HHHHHHHhcCchH-------HHHHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHH
Confidence            47999988876              9999999999877       9999999999999999999 899999999999999


Q ss_pred             hhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccchh
Q psy5989         126 NFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGEK  179 (220)
Q Consensus       126 N~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~r  179 (220)
                      |||||||||+|+|++||.|||+|||+||+++|    ++|+|+|+|||+|||+..+|..
T Consensus       202 NfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~eesykDstlImqLLRDNLtlWts  259 (260)
T 2npm_A          202 NFSVFHYEILNEPRAAIDMAKEAFEMAIEQLDKLSEDCYKDSTLIMQLLRDNLTLWTA  259 (260)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGGGCCTTTHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcCChhhhHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999998    8899999999999998877753

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=100.00  E-value=9.2e-35  Score=257.80  Aligned_cols=114  Identities=18%  Similarity=0.318  Sum_probs=106.3

Q ss_pred             hhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcC--CCCCcchhcc
Q psy5989          46 FSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKM--QPTHPIRLGL  123 (220)
Q Consensus        46 ~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L--~pt~PirLGL  123 (220)
                      --|||+.+.+|              +|||++++..|++       |++++++|++||++|.++|+++|  ||||||||||
T Consensus       140 skVFY~KMKGD--------------YyRYlAE~~~g~e-------rk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGL  198 (268)
T 3efz_A          140 ARAFCIKLKGD--------------LMRYKAEILKDEE-------KNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLAT  198 (268)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHTTCCHHH-------HHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHH
T ss_pred             hHHHHHhccch--------------HHHHHHhhcCchH-------HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHH
Confidence            67999988877              9999999999988       99999999999999999999999  9999999999


Q ss_pred             cchhHHHHHHHhcChHHHHHHHHHHHHH---HHHhhhhhhhhhhHHHHHhhcccccchhH
Q psy5989         124 ALNFSVFYYEIINSPARACHLAKQVKYS---CIGASRDTKRSVCLLCEIFHTMSSSGEKE  180 (220)
Q Consensus       124 ~LN~SVF~yEIl~~~~~A~~iAk~Afde---Ai~eld~~~~d~~lilq~L~~~s~~s~r~  180 (220)
                      +||||||||||+|+|++||++||+|||+   ||+++|.+..|+|+|||+|||+..+|..+
T Consensus       199 aLNfSVFyYEIln~p~~Ac~lAk~AFde~~~AIaeld~L~eestlImQLLRDNLtlWtsd  258 (268)
T 3efz_A          199 ILNYTILKYDLLGNPEGAMKFANRAIQAAENSRSDSEQFSENTEKLLKILRDNVSQWEQG  258 (268)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTCCC--CCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHhccCChHHHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999   99999999999999999999988777654

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=99.97  E-value=1.6e-30  Score=226.02  Aligned_cols=121  Identities=12%  Similarity=0.110  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHH
Q psy5989          20 AYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQ   99 (220)
Q Consensus        20 aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~   99 (220)
                      --++.+++-...|-|..        .-.|||+.+.+|              +|||++++..|+            +++|+
T Consensus       100 iC~dil~lld~~Lip~a--------EskVFY~KMKGD--------------YyRYlAE~~~g~------------~e~a~  145 (227)
T 2o8p_A          100 FLQSFEDCVDRLVEKSF--------FSKFFKLKVKSD--------------ISRYKLEFGLCS------------LEDSK  145 (227)
T ss_dssp             HHHHHHHHHHTCCCCSH--------HHHHHHHHHHHH--------------HHHHHHHTTSSC------------HHHHH
T ss_pred             HHhhHHHHHHHhccCcH--------HHHHHHHHHhhh--------------HHHHHHHHcccc------------HHHHH
Confidence            33444555555566654        568999988877              999999998885            69999


Q ss_pred             HHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHH---HHhhhhh--hhhhhHHHHHhhccc
Q psy5989         100 KAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSC---IGASRDT--KRSVCLLCEIFHTMS  174 (220)
Q Consensus       100 ~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeA---i~eld~~--~~d~~lilq~L~~~s  174 (220)
                      +||+.|.++|+++|||||||||||+||||||||||+|+|++||.+||+||+.+   +..-|++  +.+.|+|||+|+|+.
T Consensus       146 ~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~~~~~~~~E~m~~~~~~~~~~q~~~d~~  225 (227)
T 2o8p_A          146 KIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKAQITVYLQGIKDYI  225 (227)
T ss_dssp             HHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999976   4444555  555789999999975

>3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ...

Probab=99.90  E-value=1.2e-24  Score=190.14  Aligned_cols=69  Identities=49%  Similarity=0.780  Sum_probs=66.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHH
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFC   73 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~   73 (220)
                      .+|++|++++++|++||++|.++|+.+|||||||||||+||||||||||+|+|++||.|||+||++...
T Consensus       140 ~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd~Ai~  208 (236)
T 3iqu_A          140 ATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFDEAMA  208 (236)
T ss_dssp             CCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            578899999999999999999999999999999999999999999999999999999999999999976

>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*

Probab=99.90  E-value=2.3e-24  Score=189.51  Aligned_cols=69  Identities=57%  Similarity=0.923  Sum_probs=67.0

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHH
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFC   73 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~   73 (220)
                      .+|++|++++++|++||++|.++|+.+|||||||||||+||||||||||+|+|++||.|||+||++...
T Consensus       138 ~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd~Ai~  206 (248)
T 3uzd_A          138 ATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIA  206 (248)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999999999999976

>3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens}

Probab=99.89  E-value=3.5e-24  Score=189.46  Aligned_cols=69  Identities=51%  Similarity=0.842  Sum_probs=66.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHH
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFC   73 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~   73 (220)
                      .+|++|++++++|++||++|.++|+.+|||||||||||+||||||||||+|+|++||.|||+||++...
T Consensus       163 ~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd~Ai~  231 (261)
T 3ubw_A          163 ATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIA  231 (261)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999999999999999965

>1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A*

Probab=99.89  E-value=7.3e-24  Score=187.49  Aligned_cols=75  Identities=48%  Similarity=0.746  Sum_probs=70.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhc
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLM   79 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~   79 (220)
                      .+|++|++++++|++||++|.++|+.+|||||||||||+||||||||||+|+|++||.||++||++....+-.+.
T Consensus       142 ~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld~L~  216 (260)
T 1o9d_A          142 KTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLG  216 (260)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhhhccC
Confidence            478999999999999999999999999999999999999999999999999999999999999999998766553

>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*

Probab=99.89  E-value=5.8e-24  Score=185.63  Aligned_cols=74  Identities=49%  Similarity=0.755  Sum_probs=69.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHh
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFL   78 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~   78 (220)
                      .+|++|++++++|++||++|.++|+.+|||||||||||+||||||||||+|+|++||.|||+||++....+-.+
T Consensus       137 ~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd~Ai~eld~l  210 (234)
T 2br9_A          137 ATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFDDAIAELDTL  210 (234)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHTGGGC
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999998744433

>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}

Probab=99.88  E-value=1.1e-23  Score=186.26  Aligned_cols=71  Identities=42%  Similarity=0.628  Sum_probs=67.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHH
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYF   76 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~   76 (220)
                      .+|++|++++++|++||++|.++| .+|||||||||||+||||||||||+|+|++||.|||+||++....+-
T Consensus       163 ~~g~~r~~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~Ai~eld  233 (260)
T 2npm_A          163 STGDSKQSSAEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFEMAIEQLD  233 (260)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTGG
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhh
Confidence            478999999999999999999999 89999999999999999999999999999999999999999987543

>3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A*

Probab=99.88  E-value=6.5e-24  Score=188.30  Aligned_cols=80  Identities=18%  Similarity=0.282  Sum_probs=70.8

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHhhcC--CCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCC
Q psy5989           4 DGDEPQEGAVVDDSQKAYQQAFEISKSKM--QPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMND   81 (220)
Q Consensus         4 ~~~~~~r~~~~e~a~~aYq~A~eiA~~~L--~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~   81 (220)
                      ..+|++|++++++|++|||+|.++|+++|  ||||||||||+||||||||||+|+|++||.|||+||++.+.-+.+++.=
T Consensus       158 ~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFde~~~AIaeld~L  237 (268)
T 3efz_A          158 ILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAAENSRSDSEQF  237 (268)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTCCC--CC
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHhccC
Confidence            46899999999999999999999999999  9999999999999999999999999999999999999965545555544


Q ss_pred             CC
Q psy5989          82 PE   83 (220)
Q Consensus        82 ~e   83 (220)
                      ++
T Consensus       238 ~e  239 (268)
T 3efz_A          238 SE  239 (268)
T ss_dssp             CH
T ss_pred             Ch
Confidence            33

>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1

Probab=99.86  E-value=1.6e-22  Score=175.85  Aligned_cols=57  Identities=18%  Similarity=0.250  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH   70 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d   70 (220)
                      +++|++||+.|.++|+.+|||||||||||+||||||||||+|+|++||.+|++||+.
T Consensus       141 ~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~  197 (227)
T 2o8p_A          141 LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKI  197 (227)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999993

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.92  E-value=0.0005  Score=54.52  Aligned_cols=166  Identities=12%  Similarity=0.061  Sum_probs=113.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH--------------HHHHHHh-
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY--------------FCFYFFL-   78 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~--------------~~~~~~~-   78 (220)
                      .+.|...|++|+++..+.+++.+|.......+.+. .|-..++.++|....++++...              +..+..+ 
T Consensus        17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~   95 (283)
T 3edt_B           17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILAL-VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLY   95 (283)
T ss_dssp             SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence            34678899999999887777777866555555554 4556889999998888877542              3333444 


Q ss_pred             -cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh
Q psy5989          79 -MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR  157 (220)
Q Consensus        79 -~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld  157 (220)
                       ..++            .+.|...|++|+.+.++...|.+|.......|.+..++. .++.++|+...+++++-.-....
T Consensus        96 ~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~  162 (283)
T 3edt_B           96 GKRGK------------YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEIYATRLG  162 (283)
T ss_dssp             HTTTC------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHhcc------------HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcC
Confidence             2222            378999999999999888888899888888888877766 69999998888887765433221


Q ss_pred             hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         158 DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       158 ~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                      .-..+               .-.-+..++.+.....+|++-...++++++.
T Consensus       163 ~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          163 PDDPN---------------VAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             TTCHH---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCHH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            10100               1122344566666667777777777776653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=97.76  E-value=0.0032  Score=49.79  Aligned_cols=181  Identities=14%  Similarity=0.150  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH--------------HHHHHHh-
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY--------------FCFYFFL-   78 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~--------------~~~~~~~-   78 (220)
                      .+.|...|++|++++...+.+.+|.......|.+. .|--.++.++|....++|+..+              +..+..+ 
T Consensus        59 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  137 (283)
T 3edt_B           59 YKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV-LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLC  137 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHH
Confidence            46789999999999987777777766555555554 4557889999998888877553              2223333 


Q ss_pred             -cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh
Q psy5989          79 -MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR  157 (220)
Q Consensus        79 -~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld  157 (220)
                       ..++            .+.|...|++++++.+....+.+|.......|.+..++. .++.++|+...++++.-+-..-.
T Consensus       138 ~~~g~------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~  204 (283)
T 3edt_B          138 QNQGK------------AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK-QGKYQDAETLYKEILTRAHEKEF  204 (283)
T ss_dssp             HTTTC------------HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHcCC------------HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcC
Confidence             1222            378999999999998888888899888888888877766 69999999988888775433210


Q ss_pred             -hhhhhhh---HHH--------------------HHhhccc--ccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         158 -DTKRSVC---LLC--------------------EIFHTMS--SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       158 -~~~~d~~---lil--------------------q~L~~~s--~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                       .......   ..+                    ..++...  ....-.-+..++.+-.+..+|++-....+++++.
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          205 GSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             SSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             1111111   000                    0111111  1122335667888888889999998888887653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.74  E-value=0.003  Score=51.03  Aligned_cols=183  Identities=16%  Similarity=0.187  Sum_probs=118.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH--------------HHHHHHhc
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY--------------FCFYFFLM   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~--------------~~~~~~~~   79 (220)
                      .+.|...|++|++++.....+.+|.......+.+ ..|.-+++.++|....++++...              +..+..+.
T Consensus        85 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~  163 (311)
T 3nf1_A           85 YKDAANLLNDALAIREKTLGKDHPAVAATLNNLA-VLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC  163 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHH-HHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            4678899999999887766666666554444444 44556889999999988887653              22333331


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHh----
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGA----  155 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~e----  155 (220)
                      ..          ..-.+.|...|++++++.+....+.+|.......+.+..++. .++.++|+...++++..+-..    
T Consensus       164 ~~----------~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  232 (311)
T 3nf1_A          164 QN----------QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLK-QGKFKQAETLYKEILTRAHEREFGS  232 (311)
T ss_dssp             HT----------TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HH----------cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            11          111378999999999999887788888888777788777666 699999999999888754331    


Q ss_pred             hhhhhhhhhHHHHHhhcc----------------------cccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         156 SRDTKRSVCLLCEIFHTM----------------------SSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       156 ld~~~~d~~lilq~L~~~----------------------s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                      ++............+...                      .....-.-+..++.+-.+..+|++-....+++++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          233 VDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             -----CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            111111111111111100                      01122234667888888899999999988887654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.33  E-value=0.012  Score=47.47  Aligned_cols=165  Identities=12%  Similarity=0.052  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH--------------HHHHHHh-
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY--------------FCFYFFL-   78 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~--------------~~~~~~~-   78 (220)
                      .+.|...|+++++++.....+.+|...-...+.+.. |-..++.++|....++++...              +..+..+ 
T Consensus        43 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~  121 (311)
T 3nf1_A           43 YEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALV-YRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLY  121 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            467888999999988765555666655444455444 446789999998888877542              2223333 


Q ss_pred             -cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh
Q psy5989          79 -MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR  157 (220)
Q Consensus        79 -~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld  157 (220)
                       ..++            .+.|...|++++++.+....+.+|.......|.+..++. .++.++|+...+++++.......
T Consensus       122 ~~~g~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          122 GKRGK------------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HTTTC------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHcCc------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhC
Confidence             1222            378899999999998876777788877777777777665 68999988888777765433321


Q ss_pred             hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHh
Q psy5989         158 DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTE  207 (220)
Q Consensus       158 ~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~  207 (220)
                      ....+.               -.-...++.+-.+..+|++-....+++++
T Consensus       189 ~~~~~~---------------~~~~~~la~~~~~~g~~~~A~~~~~~al~  223 (311)
T 3nf1_A          189 PDDPNV---------------AKTKNNLASCYLKQGKFKQAETLYKEILT  223 (311)
T ss_dssp             TTCHHH---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCHHH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            111111               11233455555555666666666665554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=97.24  E-value=0.039  Score=47.29  Aligned_cols=179  Identities=13%  Similarity=0.041  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHh--c
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFL--M   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~--~   79 (220)
                      .+.|...|++|+++....  +..+.+.+.+++.--..|.-+++.++|...-++|+..            .+..+..+  .
T Consensus       159 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  236 (383)
T 3ulq_A          159 TYFSMDYARQAYEIYKEH--EAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNS  236 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTC--STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            357888999999988642  3334555666665555667789999999998888754            44445554  3


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhh
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDT  159 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~  159 (220)
                      .++.            ++|...|++|+++++..-.  .|.......|.+..++. ++++++|....++|+.-+-..-+..
T Consensus       237 ~g~~------------~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  301 (383)
T 3ulq_A          237 QSQY------------EDAIPYFKRAIAVFEESNI--LPSLPQAYFLITQIHYK-LGKIDKAHEYHSKGMAYSQKAGDVI  301 (383)
T ss_dssp             TTCH------------HHHHHHHHHHHHHHHHTTC--GGGHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             CCCH------------HHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            3333            7899999999999875322  13334445556665555 7999999999888876653321211


Q ss_pred             hhh-----------------hhHHHHHhhccccc-chhHHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989         160 KRS-----------------VCLLCEIFHTMSSS-GEKEELVQRAKLAEQAERYDDMAAAMKAVTETG  209 (220)
Q Consensus       160 ~~d-----------------~~lilq~L~~~s~~-s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~~  209 (220)
                      +..                 ...-+..+...... ...+-...++.+-.+..+|++-..+.++.++..
T Consensus       302 ~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          302 YLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            100                 11112222222111 122345567888888888999888888877654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=96.72  E-value=0.079  Score=45.46  Aligned_cols=177  Identities=14%  Similarity=0.061  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHh--c
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFL--M   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~--~   79 (220)
                      .+.|...|++|+++....  +..+.+++.+++.--..|.-+++.++|...-++|+..            .+..+..+  .
T Consensus       157 ~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~  234 (378)
T 3q15_A          157 THVSMYHILQALDIYQNH--PLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR  234 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTS--TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhC--CCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            357888899999887642  2224456666665555667789999999988888763            22333333  2


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhh
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDT  159 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~  159 (220)
                      .++            .++|...|++|+++++..   .+|.......|.+..++. +++.++|+...++|+.-+-..-+..
T Consensus       235 ~~~------------~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  298 (378)
T 3q15_A          235 SGD------------DQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCK-AGQTQKAFQFIEEGLDHITARSHKF  298 (378)
T ss_dssp             HTC------------HHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCTTCCSC
T ss_pred             CCC------------HHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            222            378999999999988754   344443444555665555 7999999998888876432211111


Q ss_pred             hhh-----------------hhHHHHHhhccccc-chhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         160 KRS-----------------VCLLCEIFHTMSSS-GEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       160 ~~d-----------------~~lilq~L~~~s~~-s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                      +..                 ...-+..+...... ...+-...++.+-.+..+|++-..+.+++++.
T Consensus       299 ~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          299 YKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            111                 11122222221111 11223445777777788888888887777654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=96.71  E-value=0.0073  Score=56.67  Aligned_cols=103  Identities=8%  Similarity=-0.067  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHH
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAV   94 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~   94 (220)
                      +.|...|++++++..+.|.|.||--+...-|.+.-|.                           ..|..           
T Consensus       326 ~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~---------------------------~~g~~-----------  367 (490)
T 3n71_A          326 HEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLS---------------------------YLQAY-----------  367 (490)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH---------------------------HTTCH-----------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH---------------------------HhcCH-----------
Confidence            4567788999999988999999986665555544332                           22333           


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh
Q psy5989          95 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR  157 (220)
Q Consensus        95 ~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld  157 (220)
                       +.|...|++|+++-++.++|.||--+....|.++.|+. .++.++|..+-++|+.---..+-
T Consensus       368 -~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~~lG  428 (490)
T 3n71_A          368 -EEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH-AGHIEVGHGMICKAYAILLVTHG  428 (490)
T ss_dssp             -HHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             -HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhC
Confidence             67888999999999999999999999999999888777 69999999888887765555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.44  E-value=0.078  Score=37.70  Aligned_cols=121  Identities=14%  Similarity=-0.008  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH------------HHHHHHh--c
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY------------FCFYFFL--M   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~------------~~~~~~~--~   79 (220)
                      .+.|...|++|++++..   ..+|..++.+++.--..|-..++.++|....++++...            +..+..+  .
T Consensus        25 ~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~  101 (164)
T 3ro3_A           25 FRDAVIAHEQRLLIAKE---FGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL  101 (164)
T ss_dssp             HHHHHHHHHHHHHHHHH---HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH---hCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            46788899999988864   23344445555544445556889999999888877543            2233333  2


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                      .++.            +.|...|++|++++...  +.+|.......+.+..++. .++.++|+...+++++-+
T Consensus       102 ~~~~------------~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A          102 LQDY------------EKAIDYHLKHLAIAQEL--KDRIGEGRACWSLGNAYTA-LGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             TTCH------------HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HhhH------------HHHHHHHHHHHHHHHHc--cchHhHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHH
Confidence            2232            78889999999887642  2233333344455555544 689999988887776543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.41  E-value=0.016  Score=53.56  Aligned_cols=102  Identities=11%  Similarity=-0.035  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHH
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAV   94 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~   94 (220)
                      +.|...|++++++..+.|.|.||-.+...-|-+.-|.                           ..|..           
T Consensus       315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~---------------------------~~g~~-----------  356 (433)
T 3qww_A          315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCL---------------------------YMQDW-----------  356 (433)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHH---------------------------HTTCH-----------
T ss_pred             HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHH---------------------------hhcCH-----------
Confidence            5678889999999999999999986655555433332                           22333           


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhh
Q psy5989          95 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGAS  156 (220)
Q Consensus        95 ~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~el  156 (220)
                       ++|...|++|+++-++.++|.||--.....|.+.-|+. .++.++|..+-++|+.=-...+
T Consensus       357 -~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~-qg~~~eA~~~~~~Al~i~~~~l  416 (433)
T 3qww_A          357 -EGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMG-LENKAAGEKALKKAIAIMEVAH  416 (433)
T ss_dssp             -HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHc
Confidence             67889999999999999999999998888888887776 6899999888877765444433

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=96.25  E-value=0.33  Score=38.68  Aligned_cols=117  Identities=12%  Similarity=-0.003  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHh--c
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFL--M   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~--~   79 (220)
                      .+.|...|++|+++     .|.+|..++.+++.--..|-..+++++|....++++..            .+..+..+  .
T Consensus        21 ~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~   95 (338)
T 3ro2_A           21 CRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV   95 (338)
T ss_dssp             HHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-----CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence            46788888888874     57777766666555455566789999999998877654            33333333  2


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhccc-chhHHHHHHHhcC--------------------h
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA-LNFSVFYYEIINS--------------------P  138 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~-LN~SVF~yEIl~~--------------------~  138 (220)
                      .++.            +.|...|++|+++....   .+|.....+ .+.+..++. .++                    .
T Consensus        96 ~g~~------------~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~  159 (338)
T 3ro2_A           96 LGNF------------DEAIVCCQRHLDISREL---NDKVGEARALYNLGNVYHA-KGKSFGCPGPQDTGEFPEDVRNAL  159 (338)
T ss_dssp             TTCH------------HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHH-HHHTSSSSSCC----CCHHHHHHH
T ss_pred             ccCH------------HHHHHHHHHHHHHHHHh---cCchHHHHHHHHHHHHHHH-cCcccccchhhhhhhhhhhHHHHH
Confidence            2333            78899999999888742   223333333 344444444 566                    6


Q ss_pred             HHHHHHHHHHHHH
Q psy5989         139 ARACHLAKQVKYS  151 (220)
Q Consensus       139 ~~A~~iAk~Afde  151 (220)
                      ++|....++++.-
T Consensus       160 ~~A~~~~~~a~~~  172 (338)
T 3ro2_A          160 QAAVDLYEENLSL  172 (338)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6776666665543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.23  E-value=0.011  Score=54.37  Aligned_cols=98  Identities=7%  Similarity=-0.070  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHH
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAV   94 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~   94 (220)
                      +.|...|++++++..+.|.|.||-.+.+.-|-+.-|                      .     ..|..           
T Consensus       304 ~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y----------------------~-----~~g~~-----------  345 (429)
T 3qwp_A          304 EQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC----------------------I-----NLGLL-----------  345 (429)
T ss_dssp             HHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH----------------------H-----HHTCH-----------
T ss_pred             HHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH----------------------H-----hhccH-----------
Confidence            456777888888877889999996554444432222                      1     12333           


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989          95 VEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus        95 ~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                       +.|...|++++++-++.++|.||.......|.++-|.. .++.++|..+-++|++--
T Consensus       346 -~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~-~g~~~eA~~~~~~Al~i~  401 (429)
T 3qwp_A          346 -EEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH-QGMFPQAMKNLRLAFDIM  401 (429)
T ss_dssp             -HHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence             77889999999999989999999999999999888777 688999888777776533

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=96.13  E-value=0.21  Score=35.37  Aligned_cols=143  Identities=9%  Similarity=-0.066  Sum_probs=88.9

Q ss_pred             CCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHh--cCCCCCCCCccccHHHHHHHH
Q psy5989          34 PTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFL--MNDPEFSPLFPCSLAVVEDSQ   99 (220)
Q Consensus        34 pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~   99 (220)
                      +.+|...+.+++.--..|-..+++++|+...++++..            .+..+..+  ..++.            +.|.
T Consensus         2 ~~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------~~A~   69 (164)
T 3ro3_A            2 PGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF------------ETAS   69 (164)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH------------HHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH------------HHHH
Confidence            3456666666666666667788999999888887754            33334443  22232            7889


Q ss_pred             HHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhcccccchh
Q psy5989         100 KAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEK  179 (220)
Q Consensus       100 ~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~lilq~L~~~s~~s~r  179 (220)
                      ..|++|+++....  +.+|.......|.+..++. .++.++|+...+++++-+-..-+.     ...            -
T Consensus        70 ~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~-----~~~------------~  129 (164)
T 3ro3_A           70 EYYKKTLLLARQL--KDRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDR-----IGE------------G  129 (164)
T ss_dssp             HHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCH-----HHH------------H
T ss_pred             HHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHccch-----HhH------------H
Confidence            9999999988752  2223333444556665555 799999998888877654322111     000            1


Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         180 EELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       180 ~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                      .-+..++.+..+..+|++-....++..+.
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            22345666666777888877777776654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=96.08  E-value=0.48  Score=40.04  Aligned_cols=123  Identities=11%  Similarity=0.029  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHh-
Q psy5989          12 AVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFL-   78 (220)
Q Consensus        12 ~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~-   78 (220)
                      ...+.|...|++|+++....  + ++...+.+++.-...|.-.++.++|....++++..            .+..+..+ 
T Consensus       197 ~~~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  273 (411)
T 4a1s_A          197 EALTRAVEFYQENLKLMRDL--G-DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH  273 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--T-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc--C-CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            44778889999999887643  2 22333344444444556689999999988888754            44445554 


Q ss_pred             -cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989          79 -MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus        79 -~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                       ..++.            +.|...|++|+++....  +.++.......+.+..+ .-.++.++|+...++++.-+
T Consensus       274 ~~~g~~------------~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~  333 (411)
T 4a1s_A          274 IFLGQF------------EDAAEHYKRTLALAVEL--GEREVEAQSCYSLGNTY-TLLHEFNTAIEYHNRHLAIA  333 (411)
T ss_dssp             HTTTCH------------HHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHCcCH------------HHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHH
Confidence             22232            78899999999988752  22333333344455544 45799999988877776544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=96.07  E-value=0.51  Score=39.23  Aligned_cols=127  Identities=9%  Similarity=0.001  Sum_probs=81.2

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHH
Q psy5989           8 PQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFY   75 (220)
Q Consensus         8 ~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~   75 (220)
                      ++-....+.|...|++|+++....  +.+|. .+.+++.-...|--+++.++|....++++.-            .+..+
T Consensus       157 ~~a~~~~~~A~~~~~~al~~~~~~--~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  233 (406)
T 3sf4_A          157 EEVRDALQAAVDFYEENLSLVTAL--GDRAA-QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNL  233 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT--TCHHH-HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc--cCcHH-HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            344455788999999999987642  33333 3444444344555688999999988888754            44444


Q ss_pred             HHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccc-hhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989          76 FFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLAL-NFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus        76 ~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~L-N~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                      ..+  ..++.            +.|...|++|+++....  + ++...+.++ +.+.. |.-.++.++|+...++++.-+
T Consensus       234 a~~~~~~g~~------------~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~  297 (406)
T 3sf4_A          234 GNAYIFLGEF------------ETASEYYKKTLLLARQL--K-DRAVEAQSCYSLGNT-YTLLQDYEKAIDYHLKHLAIA  297 (406)
T ss_dssp             HHHHHHTTCH------------HHHHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCh------------HHHHHHHHHHHHHHHhC--c-CchHHHHHHHHHHHH-HHHhCcHHHHHHHHHHHHHHH
Confidence            444  23333            78899999999988642  2 333334333 44444 445799999998888776654


Q ss_pred             H
Q psy5989         153 I  153 (220)
Q Consensus       153 i  153 (220)
                      -
T Consensus       298 ~  298 (406)
T 3sf4_A          298 Q  298 (406)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=95.86  E-value=0.51  Score=37.53  Aligned_cols=164  Identities=10%  Similarity=0.000  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHh-
Q psy5989          12 AVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFL-   78 (220)
Q Consensus        12 ~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~-   78 (220)
                      +..+.|...|++++++....  + ++...+.+++.-...|--.++.++|....++++..            .+..+..+ 
T Consensus       157 ~~~~~A~~~~~~a~~~~~~~--~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~  233 (338)
T 3ro2_A          157 NALQAAVDLYEENLSLVTAL--G-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAY  233 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--T-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhc--C-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            44678888888888877542  2 23333444444445556688999999988888754            33333333 


Q ss_pred             -cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccc-hhHHHHHHHhcChHHHHHHHHHHHHHHHHhh
Q psy5989          79 -MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLAL-NFSVFYYEIINSPARACHLAKQVKYSCIGAS  156 (220)
Q Consensus        79 -~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~L-N~SVF~yEIl~~~~~A~~iAk~AfdeAi~el  156 (220)
                       ..++            .+.|...|++++++....  + +|.....++ +.+.. |.-.++.++|+...++++.-.-..-
T Consensus       234 ~~~g~------------~~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~a~~~~~~~~  297 (338)
T 3ro2_A          234 IFLGE------------FETASEYYKKTLLLARQL--K-DRAVEAQSCYSLGNT-YTLLQDYEKAIDYHLKHLAIAQELK  297 (338)
T ss_dssp             HHHTC------------HHHHHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHcCC------------HHHHHHHHHHHHHHHHhh--c-chhHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHhcC
Confidence             2222            278889999999888642  2 233333333 44444 4457999998888777665442211


Q ss_pred             hhhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhcCce
Q psy5989         157 RDTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE  211 (220)
Q Consensus       157 d~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~~~e  211 (220)
                      +     ..            ..-.-+..++.+..+..+|++-....++.++...+
T Consensus       298 ~-----~~------------~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          298 D-----RI------------GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             C-----HH------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             C-----cH------------HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            1     00            11223455677777778888888888887765443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=95.83  E-value=0.46  Score=40.47  Aligned_cols=121  Identities=13%  Similarity=0.040  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH-------------HHHHHHHh--
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH-------------YFCFYFFL--   78 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d-------------~~~~~~~~--   78 (220)
                      -+.|...|++|.+++.. .  .+|...+.+++.--..|-.+++.++|+...++|+.-             .+..+..+  
T Consensus       119 ~~~A~~~~~~al~~~~~-~--~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  195 (383)
T 3ulq_A          119 YLSAIKFFKKAESKLIF-V--KDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL  195 (383)
T ss_dssp             HHHHHHHHHHHHTTGGG-C--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh-C--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH
Confidence            35677888888877653 2  234444445444334445589999999999888764             22223333  


Q ss_pred             cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcc-cchhHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy5989          79 MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGL-ALNFSVFYYEIINSPARACHLAKQVKYSCI  153 (220)
Q Consensus        79 ~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL-~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi  153 (220)
                      ..++.            ++|...|++|++++.+.  + ++..++. ..|.+..|+. +++.++|+...++|++-+-
T Consensus       196 ~~g~~------------~~A~~~~~~al~~~~~~--~-~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~  255 (383)
T 3ulq_A          196 DLKQY------------EDAISHFQKAYSMAEAE--K-QPQLMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAVFE  255 (383)
T ss_dssp             HTTCH------------HHHHHHHHHHHHHHHHT--T-CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HhcCH------------HHHHHHHHHHHHHHHHc--C-ChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence            22333            78999999999998753  3 3444444 4455555554 7999999998888876543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=95.80  E-value=0.72  Score=38.78  Aligned_cols=120  Identities=11%  Similarity=-0.001  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH------------HHHHHHh--cC
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY------------FCFYFFL--MN   80 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~------------~~~~~~~--~~   80 (220)
                      +.|...+++|+.    ..++.+|...+.+++.--..|-..++.++|....++|+.-.            ...+..+  ..
T Consensus        31 ~~A~~~~~~al~----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  106 (373)
T 1hz4_A           31 DEAERLAKLALE----ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  106 (373)
T ss_dssp             HHHHHHHHHHHH----TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHH----cCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHC
Confidence            445666666654    23555565455556554555667899999999888877532            2223333  33


Q ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH
Q psy5989          81 DPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS  151 (220)
Q Consensus        81 ~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde  151 (220)
                      |+.            +.|...|++++.++...-.+.+|.......|.+..+++ .++.++|....+++++.
T Consensus       107 G~~------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~  164 (373)
T 1hz4_A          107 GFL------------QTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEV  164 (373)
T ss_dssp             TCH------------HHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             CCH------------HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Confidence            333            78899999999998865455556655556667777766 59999998888877654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=95.62  E-value=0.67  Score=39.59  Aligned_cols=120  Identities=10%  Similarity=-0.046  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHH-------------HHHHHh--
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYF-------------CFYFFL--   78 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~-------------~~~~~~--   78 (220)
                      -+.|...|++|..++.. + + +|...+.+++.--..|-.++++++|....++|+.-+-             ..+..+  
T Consensus       117 ~~~A~~~~~~al~~~~~-~-~-~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~  193 (378)
T 3q15_A          117 YVEAIGYYREAEKELPF-V-S-DDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD  193 (378)
T ss_dssp             HHHHHHHHHHHHTTGGG-C-C-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhh-C-C-ChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH
Confidence            35678888888877653 2 2 2333444444333344467889999988888775322             222222  


Q ss_pred             cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhccc-chhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989          79 MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA-LNFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus        79 ~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~-LN~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                      ..++.            ++|...|++|++++++.   .+|...+.+ .|.+.-|+. .++.++|+...++|++-+
T Consensus       194 ~~~~~------------~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~  252 (378)
T 3q15_A          194 DFKHY------------DKALPHLEAALELAMDI---QNDRFIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVS  252 (378)
T ss_dssp             HTTCH------------HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HhCCH------------HHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHH
Confidence            22222            78999999999998752   233344444 445555554 799999998888877644

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=95.34  E-value=0.22  Score=41.27  Aligned_cols=87  Identities=5%  Similarity=-0.116  Sum_probs=61.2

Q ss_pred             HHhhcChHHHHHHHHHHH------------HHHHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy5989          51 YEILNSPDKACQLAKQVC------------AHYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPT  116 (220)
Q Consensus        51 yEIl~~~~~A~~lAk~A~------------~d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt  116 (220)
                      |.-.++.++|....++|+            ...+..+..+  ..++.            ++|...|++|+++.+. . |.
T Consensus       125 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~------------~~A~~~~~kal~~~~~-~-~~  190 (293)
T 2qfc_A          125 VLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL------------KKGIDLFEQILKQLEA-L-HD  190 (293)
T ss_dssp             HHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHH-S-CC
T ss_pred             HhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCH------------HHHHHHHHHHHHHHHh-c-Cc
Confidence            455678999999988887            2344444444  33333            7899999999998774 3 33


Q ss_pred             Ccc-hhcccchhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989         117 HPI-RLGLALNFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus       117 ~Pi-rLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                      +|. ...+..|.+..|+. +++.++|+...++|++-+
T Consensus       191 ~~~~~~~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          191 NEEFDVKVRYNHAKALYL-DSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHhHHHHHHH-HhhHHHHHHHHHHHHHHH
Confidence            332 22456677776665 799999999999988766

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=95.28  E-value=0.75  Score=38.20  Aligned_cols=175  Identities=9%  Similarity=-0.013  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHh--c
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFL--M   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~--~   79 (220)
                      .+.|...|++|+++     .|.+|-.++.+++.--..|-..++.++|....++|+..            .+..+..+  .
T Consensus        25 ~~~A~~~~~~al~~-----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~   99 (406)
T 3sf4_A           25 CRAGVSFFEAAVQV-----GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV   99 (406)
T ss_dssp             HHHHHHHHHHHHHH-----CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-----CcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            45678888888764     56677665555554444555688999999988877544            33334444  2


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhc-ccchhHHHHHHHhcC--------------------h
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLG-LALNFSVFYYEIINS--------------------P  138 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLG-L~LN~SVF~yEIl~~--------------------~  138 (220)
                      .++.            +.|...|++|+++....   .+|...+ ...+.+..++. .++                    .
T Consensus       100 ~g~~------------~~A~~~~~~al~~~~~~---~~~~~~~~~~~~l~~~~~~-~g~~~~~~~~~~~~~~~~~a~~~~  163 (406)
T 3sf4_A          100 LGNF------------DEAIVCCQRHLDISREL---NDKVGEARALYNLGNVYHA-KGKSFGCPGPQDVGEFPEEVRDAL  163 (406)
T ss_dssp             TTCH------------HHHHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHHHH-HHHTCC-------CCCCHHHHHHH
T ss_pred             cCCH------------HHHHHHHHHHHHHHHhc---ccccchHHHHHHHHHHHHH-cCCcccccccchhhhhhhhHHHHH
Confidence            2333            78899999999988752   1233333 33444554444 566                    6


Q ss_pred             HHHHHHHHHHHHHHHHhhh------------------hhhhhhh----HHHHHhhcccc-cchhHHHHHHHHHHHHHhhH
Q psy5989         139 ARACHLAKQVKYSCIGASR------------------DTKRSVC----LLCEIFHTMSS-SGEKEELVQRAKLAEQAERY  195 (220)
Q Consensus       139 ~~A~~iAk~AfdeAi~eld------------------~~~~d~~----lilq~L~~~s~-~s~r~~~~~~akl~eq~ery  195 (220)
                      ++|+...++++.-+-..-+                  .-+.++.    -.+++..+... ...-.-+..++.+.....+|
T Consensus       164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  243 (406)
T 3sf4_A          164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF  243 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence            7777666666543222110                  0011111    11111111110 01111455566667777778


Q ss_pred             HHHHHHHHHhHhcC
Q psy5989         196 DDMAAAMKAVTETG  209 (220)
Q Consensus       196 ~~m~~~~~~~~~~~  209 (220)
                      ++-....+++++..
T Consensus       244 ~~A~~~~~~al~~~  257 (406)
T 3sf4_A          244 ETASEYYKKTLLLA  257 (406)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88777777776654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=95.27  E-value=0.42  Score=36.03  Aligned_cols=123  Identities=8%  Similarity=-0.039  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHH-------------HHHHHhcC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYF-------------CFYFFLMN   80 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~-------------~~~~~~~~   80 (220)
                      .+.|...|++|++++.. .  .+|...+.+++.--..|...++.++|....++|+..+-             ..+..+..
T Consensus        42 ~~~A~~~~~~al~~~~~-~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~  118 (203)
T 3gw4_A           42 FDEARASFQALQQQAQK-S--GDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVAL  118 (203)
T ss_dssp             HHHHHHHHHHHHHHHHT-T--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-c--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence            45788899999998864 2  23344455555545556678999999988888776521             11111100


Q ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989          81 DPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus        81 ~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                                +..-.+.|...|++|+++++.   ..+|...+.+++.-...|--.+++++|+...++|++-+
T Consensus       119 ----------~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          119 ----------HFGDLAGARQEYEKSLVYAQQ---ADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF  177 (203)
T ss_dssp             ----------HHTCHHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ----------HhCCHHHHHHHHHHHHHHHHh---ccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence                      111136888999999988764   33454444444443344445789998887777766544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=94.99  E-value=1.4  Score=37.11  Aligned_cols=189  Identities=6%  Similarity=-0.054  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHhc--
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFLM--   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~~--   79 (220)
                      .+.|...|++|++++...  +.+|... .+++.--..|..+++.++|....++++..            .+..+..+.  
T Consensus       102 ~~~A~~~~~~al~~~~~~--~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A          102 YNKAMQYHKHDLTLAKSM--NDRLGEA-KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHT--TCHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHc--cCchHHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHH
Confidence            467888899998887642  3334333 33333344556778899998888877665            233333331  


Q ss_pred             CCC-----CCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy5989          80 NDP-----EFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIG  154 (220)
Q Consensus        80 ~~~-----e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~  154 (220)
                      .++     ...++..+-....+.|...|++++++....  +.+|.......|.+..++. .++.++|+...++++.-.-.
T Consensus       179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~  255 (411)
T 4a1s_A          179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLGNTYYL-LGDFQAAIEHHQERLRIARE  255 (411)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHh
Confidence            111     111122223344788999999999888653  3334444444555555444 79999999888888665433


Q ss_pred             hhh------------------hhhhhhhHHH----HHhhcccc-cchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         155 ASR------------------DTKRSVCLLC----EIFHTMSS-SGEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       155 eld------------------~~~~d~~lil----q~L~~~s~-~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                      .-+                  .-+.++...+    ++..+... ...-.-+..++.+..+..+|++-....++.++.
T Consensus       256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  332 (411)
T 4a1s_A          256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI  332 (411)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            211                  0122222111    11111110 011234556777777777888877777776553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.88  E-value=0.35  Score=40.32  Aligned_cols=117  Identities=6%  Similarity=-0.072  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHhc--C
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFLM--N   80 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~~--~   80 (220)
                      +.|..+|++|+++... +  -+|...+.+++---..|.-++++++|+..-++|+.-            .+..+..+-  .
T Consensus        54 ~~A~~~~~~al~~~~~-~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~  130 (292)
T 1qqe_A           54 NLAGDSFLKAADYQKK-A--GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND  130 (292)
T ss_dssp             HHHHHHHHHHHHHHHH-T--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHH-h--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            5778888888887653 2  244445556655555677789999999888888753            333444441  1


Q ss_pred             -CCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchh-cccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          81 -DPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRL-GLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        81 -~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirL-GL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                       ++.            +.|...|++|+++....   .+|... ....|.+.++.. ++++++|+..-+++..
T Consensus       131 lg~~------------~~A~~~~~~Al~~~~~~---~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          131 LHDY------------AKAIDCYELAGEWYAQD---QSVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIK  186 (292)
T ss_dssp             TCCH------------HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             hcCH------------HHHHHHHHHHHHHHHhC---CChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence             333            78999999999987531   122222 234566777666 6899999987776654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=94.79  E-value=0.3  Score=40.43  Aligned_cols=117  Identities=9%  Similarity=-0.072  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH-------------HHHHHHHHh--c
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA-------------HYFCFYFFL--M   79 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~-------------d~~~~~~~~--~   79 (220)
                      +.|...|++|++++..   ..+|.....++|.--..|--+++.++|...-++|+.             ..+..+..+  .
T Consensus       132 ~~A~~~~~~al~~~~~---~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~  208 (293)
T 2qfc_A          132 EYCILELKKLLNQQLT---GIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYL  208 (293)
T ss_dssp             HHHHHHHHHHHTTCCC---SSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHH
Confidence            4667777777765432   233333444454433444558999999999998872             233344443  2


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHH-HHHHHHHH
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARA-CHLAKQVK  149 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A-~~iAk~Af  149 (220)
                      .++.            ++|...|++|++++..   ..++..++.+++.--..|.-+++.++| ...-++|+
T Consensus       209 ~~~y------------~~Al~~~~kal~~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          209 DSRY------------EESLYQVNKAIEISCR---INSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             TTCH------------HHHHHHHHHHHHHHHH---TTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HhhH------------HHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3333            8999999999999864   334445555544434455568999998 44344444

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=94.36  E-value=0.95  Score=39.06  Aligned_cols=180  Identities=13%  Similarity=0.088  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHHHHhhcC-CCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccc--
Q psy5989          14 VDDSQKAYQQAFEISKSKM-QPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPC--   90 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L-~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~--   90 (220)
                      -+.|++.|++|+++....- ...||-.+...-|.+.-| .-+++.++|...-+++..-.-.    +. + .+.+....  
T Consensus        67 ~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y-~~~g~~~~A~~~~~ka~~i~~~----~~-~-~~~~~~~~~~  139 (472)
T 4g1t_A           67 NEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVY-YHMGRLSDVQIYVDKVKHVCEK----FS-S-PYRIESPELD  139 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHH----SC-C-SSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHH-HHcCChHHHHHHHHHHHHHhHh----cc-c-ccchhhHHHH
Confidence            4678999999999876543 234565544445555544 4578899998777766542211    11 1 01110000  


Q ss_pred             ----------cHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH------HHH
Q psy5989          91 ----------SLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS------CIG  154 (220)
Q Consensus        91 ----------k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde------Ai~  154 (220)
                                ...--++|..+|++|+++     .|.||--.. .+....+.+.-.++.++|+..-++|+.-      +..
T Consensus       140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~-~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~  213 (472)
T 4g1t_A          140 CEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTS-GLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKV  213 (472)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHH-HHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHH-HHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHH
Confidence                      011236788899988864     588875321 1112334455567777887776666531      000


Q ss_pred             h-------hh---hhhhhhhHHH-HHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         155 A-------SR---DTKRSVCLLC-EIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       155 e-------ld---~~~~d~~lil-q~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                      .       +-   .-+.++.-++ +.+....  ..-.-+..++.+-.+..+|++-....+++++.
T Consensus       214 ~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          214 LLALKLHKMREEGEEEGEGEKLVEEALEKAP--GVTDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             HHHHHHHHCC------CHHHHHHHHHHHHCS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            0       00   0111221111 1121111  22334566777777888888888888877664

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=94.27  E-value=0.39  Score=39.76  Aligned_cols=88  Identities=5%  Similarity=-0.072  Sum_probs=64.8

Q ss_pred             hhcChHHHHHHHHHHHHH------------HHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q psy5989          53 ILNSPDKACQLAKQVCAH------------YFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHP  118 (220)
Q Consensus        53 Il~~~~~A~~lAk~A~~d------------~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~P  118 (220)
                      -.++.++|+..-++|+.-            .+..+..+  ..++.            ++|...|++|+++.+. ++..+|
T Consensus       127 ~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~------------~~A~~~~~~al~~~~~-~~~~~~  193 (293)
T 3u3w_A          127 KKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYL------------KKGIDLFEQILKQLEA-LHDNEE  193 (293)
T ss_dssp             TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHH-SSCCHH
T ss_pred             cccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCH------------HHHHHHHHHHHHHHHh-cccchh
Confidence            445889999988888751            23334433  22333            7899999999998874 556667


Q ss_pred             chhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy5989         119 IRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIG  154 (220)
Q Consensus       119 irLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~  154 (220)
                      ....+..|.+..|++ +++.++|+...++|++-+..
T Consensus       194 ~~~~~~~nlg~~y~~-~~~y~~A~~~~~~al~~~~~  228 (293)
T 3u3w_A          194 FDVKVRYNHAKALYL-DSRYEESLYQVNKAIEISCR  228 (293)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence            777788899988887 69999999999888776543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=94.04  E-value=1.4  Score=33.04  Aligned_cols=102  Identities=13%  Similarity=0.134  Sum_probs=66.7

Q ss_pred             CccccccccchhHHHHHhhcChHHHHHHHHHHHH------------HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHH
Q psy5989          36 HPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------------HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKA  101 (220)
Q Consensus        36 ~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------------d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~a  101 (220)
                      +|...+.+++.--..|-..++.++|....++|+.            ..+..+..+  ..++.            +.|...
T Consensus        21 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~------------~~A~~~   88 (203)
T 3gw4_A           21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW------------DAARRC   88 (203)
T ss_dssp             STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH------------HHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH------------HHHHHH
Confidence            4444555666555566678999999999988887            223333333  22333            789999


Q ss_pred             HHHHHHHHHhcCCCCCcchhccc-chhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989         102 YQEAFDIAKSKMQPTHPIRLGLA-LNFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus       102 Yq~A~eiA~~~L~pt~PirLGL~-LN~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                      |++|+++++. . +.+|...+.+ .|.+.-++. .+++++|....++++.-+
T Consensus        89 ~~~al~~~~~-~-~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A           89 FLEERELLAS-L-PEDPLAASANAYEVATVALH-FGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHH-S-CCCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-c-CccHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHH
Confidence            9999999873 3 3345344444 444554444 799999998888877653

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=94.03  E-value=1.3  Score=36.41  Aligned_cols=120  Identities=10%  Similarity=-0.040  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH-------------HHHHHHHh--
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH-------------YFCFYFFL--   78 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d-------------~~~~~~~~--   78 (220)
                      .+.|...|++|+++..   +..++.....++|.--..|.-+++.++|...-++|+..             .+..+..+  
T Consensus       131 ~~~Ai~~~~~al~~~~---~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~  207 (293)
T 3u3w_A          131 YEYCILELKKLLNQQL---TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALY  207 (293)
T ss_dssp             HHHHHHHHHHHHHTCC---CCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc---ccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            3677888888887432   23333333334444344455688999999999998842             22333333  


Q ss_pred             cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccch-hHHHHHHHhc-ChHHHHHHHHHHHHHH
Q psy5989          79 MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALN-FSVFYYEIIN-SPARACHLAKQVKYSC  152 (220)
Q Consensus        79 ~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN-~SVF~yEIl~-~~~~A~~iAk~AfdeA  152 (220)
                      ..++.            ++|...|++|++++...   .++..++.+++ .+.-++. ++ +.++|+..-++|+.-+
T Consensus       208 ~~~~y------------~~A~~~~~~al~~~~~~---~~~~~~~~~~~~lg~~~~~-~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          208 LDSRY------------EESLYQVNKAIEISCRI---NSMALIGQLYYQRGECLRK-LEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HTTCH------------HHHHHHHHHHHHHHHHT---TBCTTHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHhHH------------HHHHHHHHHHHHHHHHc---CcHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHH
Confidence            22333            78999999999998752   33444454444 4544444 66 4588887777766544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=93.95  E-value=1.7  Score=33.81  Aligned_cols=165  Identities=15%  Similarity=0.101  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------HHHHHHHh--cCCCCCCCC
Q psy5989          16 DSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------YFCFYFFL--MNDPEFSPL   87 (220)
Q Consensus        16 ~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~--~~~~e~~~~   87 (220)
                      .|...|+++++.     .|.++.    +++.-...|.-.++.++|....++++..      .+..+..+  ..++     
T Consensus        55 ~A~~~~~~al~~-----~~~~~~----~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~-----  120 (252)
T 2ho1_A           55 QAKVPLRKALEI-----DPSSAD----AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKR-----  120 (252)
T ss_dssp             GGHHHHHHHHHH-----CTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-----
T ss_pred             HHHHHHHHHHhc-----CCChHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhH-----
Confidence            456666666653     233331    2222233445688999999988887653      22333333  1222     


Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----------
Q psy5989          88 FPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR----------  157 (220)
Q Consensus        88 ~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----------  157 (220)
                             .+.|...|++++.      .|.+|.......+.+..++. .++.++|+...++++...-...+          
T Consensus       121 -------~~~A~~~~~~~~~------~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  186 (252)
T 2ho1_A          121 -------YEEAYQRLLEASQ------DTLYPERSRVFENLGLVSLQ-MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLY  186 (252)
T ss_dssp             -------HHHHHHHHHHHTT------CTTCTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHh------CccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHH
Confidence                   2566677776654      34556555556666666655 68999999888887653211111          


Q ss_pred             --hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989         158 --DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETG  209 (220)
Q Consensus       158 --~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~~  209 (220)
                        .-+.++...++...... -...+-+..++.+.....+|++-....+++.+..
T Consensus       187 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          187 KEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence              11233322222222221 1334456677777778888998888888876643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=92.05  E-value=1.8  Score=36.15  Aligned_cols=119  Identities=14%  Similarity=0.042  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------------HHHHHHHhcC-C
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------------YFCFYFFLMN-D   81 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------------~~~~~~~~~~-~   81 (220)
                      +.|..+|++|.++... +.  +|...+.+++----.|.-++++++|+..-++|+.-            .+..+..+-. +
T Consensus        53 ~~A~~~~~~al~~~~~-~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~g  129 (307)
T 2ifu_A           53 EQAKDAYLQEAEAHAN-NR--SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPL  129 (307)
T ss_dssp             HHHHHHHHHHHHHHHH-TT--CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHH-cC--CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcC
Confidence            5778888999888753 32  34444445554445666778888888888777643            2333444421 2


Q ss_pred             CCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcch-hcccchhHHHHHHHhcChHHHHHHHHHHHHHH
Q psy5989          82 PEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIR-LGLALNFSVFYYEIINSPARACHLAKQVKYSC  152 (220)
Q Consensus        82 ~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pir-LGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeA  152 (220)
                      +            .++|...|++|+++...   ..+|.. .....|.+..|.. +++.++|+..-+++..-.
T Consensus       130 ~------------~~~A~~~~~~Al~~~~~---~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~  185 (307)
T 2ifu_A          130 D------------LSKAVHLYQQAAAVFEN---EERLRQAAELIGKASRLLVR-QQKFDEAAASLQKEKSMY  185 (307)
T ss_dssp             C------------HHHHHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             C------------HHHHHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHH
Confidence            2            37899999999998764   122333 3344566766665 799999999888887654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=92.04  E-value=1.1  Score=37.23  Aligned_cols=111  Identities=11%  Similarity=0.129  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------H-HHHHHHHhcCCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------H-YFCFYFFLMNDPEFSP   86 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d-~~~~~~~~~~~~e~~~   86 (220)
                      .+.|...|++|+.    .+.|.++   .+-+++..|+ +-.++.++|..+-++|+.      + .+..+..+..      
T Consensus        80 ~~~A~~~~~rAl~----~~~p~~~---~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~------  145 (308)
T 2ond_A           80 SDEAANIYERAIS----TLLKKNM---LLYFAYADYE-ESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR------  145 (308)
T ss_dssp             HHHHHHHHHHHHT----TTTTTCH---HHHHHHHHHH-HHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH------
T ss_pred             hHHHHHHHHHHHH----HhCcccH---HHHHHHHHHH-HhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH------
Confidence            5667777777764    1344443   2334444443 445667777766666653      2 3333333311      


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          87 LFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        87 ~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                          +..-.+.|...|++|++     +.|.+   ..+.+..+.+.+...+++++|+.+-++|+.
T Consensus       146 ----~~~~~~~A~~~~~~a~~-----~~p~~---~~~~~~~a~~~~~~~~~~~~A~~~~~~al~  197 (308)
T 2ond_A          146 ----RAEGIKSGRMIFKKARE-----DARTR---HHVYVTAALMEYYCSKDKSVAFKIFELGLK  197 (308)
T ss_dssp             ----HHHCHHHHHHHHHHHHT-----STTCC---THHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             ----HhcCHHHHHHHHHHHHh-----cCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                11123556666666653     22322   222334444444445666666666666644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=91.70  E-value=3.9  Score=32.21  Aligned_cols=120  Identities=14%  Similarity=0.060  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHhcCCC-CCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFLMNDP-EFSP   86 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~~~~~-e~~~   86 (220)
                      .+.|...|++|+.     +.|.+|.-   ..|.+. .|.-.++.++|....++++.      ..+..+..+.... ....
T Consensus        21 ~~~A~~~~~~al~-----~~p~~~~a---~~~lg~-~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~   91 (217)
T 2pl2_A           21 YDAALTLFERALK-----ENPQDPEA---LYWLAR-TQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAE   91 (217)
T ss_dssp             HHHHHHHHHHHHT-----TSSSCHHH---HHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHH-----hCCCCHHH---HHHHHH-HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhh
Confidence            3466677776653     55666542   222322 34568899999998888764      2333333331110 0000


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH
Q psy5989          87 LFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS  151 (220)
Q Consensus        87 ~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde  151 (220)
                      .......-.+.|...|++|+++     .|.+|.   ..+|.+..++. .++.++|+..-++|+.-
T Consensus        92 ~~~~~~g~~~~A~~~~~~al~~-----~P~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           92 DRERGKGYLEQALSVLKDAERV-----NPRYAP---LHLQRGLVYAL-LGERDKAEASLKQALAL  147 (217)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             hhcccccCHHHHHHHHHHHHHh-----CcccHH---HHHHHHHHHHH-cCChHHHHHHHHHHHhc
Confidence            0000113456788888888753     566653   33556665555 78999988887777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=91.67  E-value=4.3  Score=32.41  Aligned_cols=122  Identities=11%  Similarity=0.041  Sum_probs=70.7

Q ss_pred             HHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCC-cchh
Q psy5989          51 YEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTH-PIRL  121 (220)
Q Consensus        51 yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~-PirL  121 (220)
                      |.-.++.++|....++++.      ..+..+..+  ..++            .+.|...|++++++....-.+.+ |...
T Consensus       169 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          169 YGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGE------------WKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             HHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccc------------HHHHHHHHHHHHHHhhhccccccccHHH
Confidence            4457778888877777664      233333333  2222            26788999999988754333222 2223


Q ss_pred             cccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHH
Q psy5989         122 GLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAA  201 (220)
Q Consensus       122 GL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~  201 (220)
                      ....+.+..++. .++.++|+...++++...-        +               .-+-+..++.+..+..+|++-+..
T Consensus       237 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~--------~---------------~~~~~~~la~~~~~~g~~~~A~~~  292 (330)
T 3hym_B          237 PLLNNLGHVCRK-LKKYAEALDYHRQALVLIP--------Q---------------NASTYSAIGYIHSLMGNFENAVDY  292 (330)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST--------T---------------CSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHHHHhhCc--------c---------------chHHHHHHHHHHHHhccHHHHHHH
Confidence            344455555544 7888888877777664310        0               112344556666666777777777


Q ss_pred             HHHhHhc
Q psy5989         202 MKAVTET  208 (220)
Q Consensus       202 ~~~~~~~  208 (220)
                      .+++++.
T Consensus       293 ~~~al~~  299 (330)
T 3hym_B          293 FHTALGL  299 (330)
T ss_dssp             HHTTTTT
T ss_pred             HHHHHcc
Confidence            6666553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=91.55  E-value=3.4  Score=30.98  Aligned_cols=166  Identities=13%  Similarity=0.080  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cC-CCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MN-DPEF   84 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~-~~e~   84 (220)
                      .+.|...|+.++++     .|.+|.    +++.-...|.-.++.++|....++++.      ..+..+..+  .. ++  
T Consensus        24 ~~~A~~~~~~~~~~-----~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~--   92 (225)
T 2vq2_A           24 YRQATASIEDALKS-----DPKNEL----AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR--   92 (225)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC--
T ss_pred             HHHHHHHHHHHHHh-----CccchH----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc--
Confidence            45677777777653     343332    222223345568899999998888764      233334444  22 22  


Q ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh-------
Q psy5989          85 SPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR-------  157 (220)
Q Consensus        85 ~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld-------  157 (220)
                                .+.|...|+++++      .|.+|.......+.+..+.. .++.++|+...++++...-...+       
T Consensus        93 ----------~~~A~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  155 (225)
T 2vq2_A           93 ----------PAESMAYFDKALA------DPTYPTPYIANLNKGICSAK-QGQFGLAEAYLKRSLAAQPQFPPAFKELAR  155 (225)
T ss_dssp             ----------HHHHHHHHHHHHT------STTCSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHc------CcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence                      2677888888764      35666666666666666655 78999998888777653211111       


Q ss_pred             -----hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHh
Q psy5989         158 -----DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTE  207 (220)
Q Consensus       158 -----~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~  207 (220)
                           .-+.++...++...........+-+..++.+..+..++++...+.+++.+
T Consensus       156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence                 11233322222222221112233345556666667777777777776654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=91.51  E-value=3  Score=32.72  Aligned_cols=30  Identities=17%  Similarity=-0.083  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989         180 EELVQRAKLAEQAERYDDMAAAMKAVTETG  209 (220)
Q Consensus       180 ~~~~~~akl~eq~ery~~m~~~~~~~~~~~  209 (220)
                      +-+..++.+-.+..+|++-..+.+++++..
T Consensus       222 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          222 EANEYIAYYYTINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            345557888888899999999988887643

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=90.94  E-value=0.56  Score=43.82  Aligned_cols=72  Identities=11%  Similarity=0.084  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHH
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLA   93 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~   93 (220)
                      -+.|..-|++|+++-...++|.||--+....|.++-|+.                           .|..          
T Consensus       367 ~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~---------------------------~G~~----------  409 (490)
T 3n71_A          367 YEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH---------------------------AGHI----------  409 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH---------------------------TTCH----------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH---------------------------CCCH----------
Confidence            357889999999999999999999977777777665542                           2222          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcchhccc
Q psy5989          94 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA  124 (220)
Q Consensus        94 ~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~  124 (220)
                        +.|...|++|++|-+..+.|.||.-.-+.
T Consensus       410 --~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~  438 (490)
T 3n71_A          410 --EVGHGMICKAYAILLVTHGPSHPITKDLE  438 (490)
T ss_dssp             --HHHHHHHHHHHHHHHHHTCTTSHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence              77888999999999889999999766544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=90.78  E-value=3.8  Score=32.97  Aligned_cols=84  Identities=17%  Similarity=0.200  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchhc-ccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhccc
Q psy5989          96 EDSQKAYQEAFDIAKSKMQPTHPIRLG-LALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMS  174 (220)
Q Consensus        96 e~a~~aYq~A~eiA~~~L~pt~PirLG-L~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~lilq~L~~~s  174 (220)
                      +.|...|++++++     .|.+|.... +..+.+..++. .++.++|+...++++..     +   .             
T Consensus       251 ~~A~~~~~~~~~~-----~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~-----~---~-------------  303 (359)
T 3ieg_A          251 TDATSKYESVMKT-----EPSVAEYTVRSKERICHCFSK-DEKPVEAIRICSEVLQM-----E---P-------------  303 (359)
T ss_dssp             HHHHHHHHHHHHH-----CCSSHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH-----C---T-------------
T ss_pred             HHHHHHHHHHHhc-----CCCchHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHh-----C---c-------------
Confidence            6677777777653     366665433 33445555444 78888888777766543     1   0             


Q ss_pred             ccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       175 ~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                        ..-+-+..++.+..+..+|++-....+++++.
T Consensus       304 --~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          304 --DNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             --TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             --ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence              11124455666666667777777777776654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=90.74  E-value=1.6  Score=36.39  Aligned_cols=115  Identities=14%  Similarity=0.023  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccc-hhHHHHHhhcChHHHHHHHHHHHHHH------------HHHHHHh--c
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALN-FSVFYYEILNSPDKACQLAKQVCAHY------------FCFYFFL--M   79 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN-~SVF~yEIl~~~~~A~~lAk~A~~d~------------~~~~~~~--~   79 (220)
                      +.|...|++|+++...   .-+|...+.+++ .+..| +- +++++|+..-++|+.-.            +..+..+  .
T Consensus        93 ~~A~~~~~~Al~l~~~---~g~~~~~a~~~~~lg~~~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~  167 (307)
T 2ifu_A           93 PEAVQYIEKASVMYVE---NGTPDTAAMALDRAGKLM-EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVR  167 (307)
T ss_dssp             GGGHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHH-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHHH-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence            4678889999988753   234444444443 34444 44 99999999888887532            3333333  2


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK  149 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af  149 (220)
                      .++.            +.|...|++|+++.... +. +| ..+.++.--...|--++++++|+..-+++.
T Consensus       168 ~g~~------------~~A~~~~~~al~~~~~~-~~-~~-~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          168 QQKF------------DEAAASLQKEKSMYKEM-EN-YP-TCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             TTCH------------HHHHHHHHHHHHHHHHT-TC-HH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cCCH------------HHHHHHHHHHHHHHHHc-CC-hh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            2333            78899999999987642 11 22 222222223334445688888776554443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=90.50  E-value=2.2  Score=35.48  Aligned_cols=109  Identities=11%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHh------hcCh-------HHHHHHHHHHHHH-------HH
Q psy5989          13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEI------LNSP-------DKACQLAKQVCAH-------YF   72 (220)
Q Consensus        13 ~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEI------l~~~-------~~A~~lAk~A~~d-------~~   72 (220)
                      ..++|...|++|+.+.     |.+   ..+-+|+..++...      .++.       ++|..+-++|+..       ++
T Consensus        31 ~~~~a~~~~~~al~~~-----p~~---~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~  102 (308)
T 2ond_A           31 ITKRVMFAYEQCLLVL-----GHH---PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY  102 (308)
T ss_dssp             HHHHHHHHHHHHHHHH-----TTC---HHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHc-----CCC---HHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHH
Confidence            3478899999998742     333   44556777777654      5775       7888888887762       33


Q ss_pred             HHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989          73 CFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK  149 (220)
Q Consensus        73 ~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af  149 (220)
                      ..+..+  ..++            .+.|...|++|+.     ++|.+|..  +.+|+..|+.. .++.++|+.+-++|.
T Consensus       103 ~~~~~~~~~~~~------------~~~A~~~~~~al~-----~~p~~~~~--~~~~~~~~~~~-~~~~~~A~~~~~~a~  161 (308)
T 2ond_A          103 FAYADYEESRMK------------YEKVHSIYNRLLA-----IEDIDPTL--VYIQYMKFARR-AEGIKSGRMIFKKAR  161 (308)
T ss_dssp             HHHHHHHHHTTC------------HHHHHHHHHHHHT-----SSSSCTHH--HHHHHHHHHHH-HHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC------------HHHHHHHHHHHHh-----ccccCccH--HHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence            333333  1222            3788999999984     67877742  55677877766 577777765555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=90.39  E-value=4.9  Score=32.91  Aligned_cols=97  Identities=11%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             cCCCCCcccccc-ccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHH
Q psy5989          31 KMQPTHPIRLGL-ALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKA  101 (220)
Q Consensus        31 ~L~pt~PirLGL-aLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~a  101 (220)
                      .+.|.+|..-.- .++.+.. |--.++.++|....++++.      ..+..+..+  ..++.            +.|...
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~------------~~A~~~  120 (368)
T 1fch_A           54 QFEEENPLRDHPQPFEEGLR-RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE------------LLAISA  120 (368)
T ss_dssp             CCCSSCTTTTCSSHHHHHHH-HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCH------------HHHHHH
T ss_pred             hcCCCCcccchHHHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCH------------HHHHHH
Confidence            466777754222 2333333 3456788888888877764      233333333  22222            567777


Q ss_pred             HHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989         102 YQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK  149 (220)
Q Consensus       102 Yq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af  149 (220)
                      |++++++     .|.+|.   ...+.+.. |.-.++.++|+...++++
T Consensus       121 ~~~al~~-----~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~~~  159 (368)
T 1fch_A          121 LRRCLEL-----KPDNQT---ALMALAVS-FTNESLQRQACEILRDWL  159 (368)
T ss_dssp             HHHHHHH-----CTTCHH---HHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhc-----CCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHH
Confidence            7777653     344433   22223332 233567777666666554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=90.33  E-value=0.45  Score=43.46  Aligned_cols=74  Identities=16%  Similarity=0.160  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHH
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLA   93 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~   93 (220)
                      -+.|..-|++++++-+..++|.||.......|..+-|..                           .|..          
T Consensus       345 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~---------------------------~g~~----------  387 (429)
T 3qwp_A          345 LEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLH---------------------------QGMF----------  387 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHH---------------------------TTCH----------
T ss_pred             HHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHh---------------------------cCCH----------
Confidence            467889999999999999999999987777777665553                           2222          


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcchhcccch
Q psy5989          94 VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALN  126 (220)
Q Consensus        94 ~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN  126 (220)
                        +.|...|++|++|-+..+.|.||.-.-+.-|
T Consensus       388 --~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~  418 (429)
T 3qwp_A          388 --PQAMKNLRLAFDIMRVTHGREHSLIEDLILL  418 (429)
T ss_dssp             --HHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred             --HHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence              6788889999998888899999976644433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=89.84  E-value=5.8  Score=30.86  Aligned_cols=111  Identities=16%  Similarity=0.085  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      .+.|...|+++++..    +..+|-......+.+. .|--.++.++|....++++.      ..+..+..+  ..++   
T Consensus        21 ~~~A~~~~~~~~~~~----~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~---   92 (275)
T 1xnf_A           21 QEVILARMEQILASR----ALTDDERAQLLYERGV-LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN---   92 (275)
T ss_dssp             HHHHHHHHHHHHTSS----CCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHhcc----cccCchhHHHHHHHHH-HHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC---
Confidence            567777777776531    2223333333333333 33456788888888887763      334444444  2222   


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                               .+.|...|++|+++     .|.+|.   ...+.+..++. +++.++|+...++++.
T Consensus        93 ---------~~~A~~~~~~al~~-----~~~~~~---~~~~la~~~~~-~g~~~~A~~~~~~a~~  139 (275)
T 1xnf_A           93 ---------FDAAYEAFDSVLEL-----DPTYNY---AHLNRGIALYY-GGRDKLAQDDLLAFYQ  139 (275)
T ss_dssp             ---------HHHHHHHHHHHHHH-----CTTCTH---HHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHhc-----CccccH---HHHHHHHHHHH-hccHHHHHHHHHHHHH
Confidence                     26777778877754     344432   22334444444 6788887777776653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=89.80  E-value=5.5  Score=30.49  Aligned_cols=54  Identities=11%  Similarity=0.070  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA   69 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~   69 (220)
                      .+.|...|+.++++... .+|.+|.......+. .-.|.-+++.++|...-++++.
T Consensus        54 ~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~a~~  107 (258)
T 3uq3_A           54 YETAISTLNDAVEQGRE-MRADYKVISKSFARI-GNAYHKLGDLKKTIEYYQKSLT  107 (258)
T ss_dssp             HHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcc-cccchHHHHHHHHHH-HHHHHHcccHHHHHHHHHHHHh
Confidence            45778888888887643 344443322222333 3344567888999888887766

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=89.67  E-value=6.6  Score=31.21  Aligned_cols=119  Identities=12%  Similarity=0.022  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH---------HHHHHHHhc-C-CCCC
Q psy5989          16 DSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH---------YFCFYFFLM-N-DPEF   84 (220)
Q Consensus        16 ~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d---------~~~~~~~~~-~-~~e~   84 (220)
                      .|...|+.++     ...|.+|......++.+. .|--+++.++|+..-++++..         .+..+..+. . ++. 
T Consensus        33 ~A~~~~~~~l-----~~~p~~~~~~~a~~~lg~-~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~-  105 (261)
T 3qky_A           33 RAIEYFKAVF-----TYGRTHEWAADAQFYLAR-AYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPP-  105 (261)
T ss_dssp             HHHHHHHHHG-----GGCSCSTTHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCC-
T ss_pred             HHHHHHHHHH-----HhCCCCcchHHHHHHHHH-HHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccc-
Confidence            4444444443     245777654333333333 344578999999988887753         223333331 1 110 


Q ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhccc--------------chhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          85 SPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLA--------------LNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        85 ~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~--------------LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                         ......-.+.|...|+++++     +.|.+|......              ++.+..|+. .++.++|+..-++++.
T Consensus       106 ---~~~~~~~~~~A~~~~~~~l~-----~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~  176 (261)
T 3qky_A          106 ---YELDQTDTRKAIEAFQLFID-----RYPNHELVDDATQKIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFD  176 (261)
T ss_dssp             ---TTSCCHHHHHHHHHHHHHHH-----HCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             ---ccccchhHHHHHHHHHHHHH-----HCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Confidence               00013445788888888875     357776554333              555666555 6888777766655543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=89.50  E-value=5.6  Score=32.93  Aligned_cols=108  Identities=15%  Similarity=0.161  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCC--CccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPT--HPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPE   83 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt--~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e   83 (220)
                      .+.|...|++++++     .|.  +|.   ...|.+.. |.-.++.++|....++++.      ..+..+..+  ..++.
T Consensus       193 ~~~A~~~~~~al~~-----~p~~~~~~---~~~~l~~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  263 (365)
T 4eqf_A          193 LEGVKELYLEAAHQ-----NGDMIDPD---LQTGLGVL-FHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS  263 (365)
T ss_dssp             HHHHHHHHHHHHHH-----SCSSCCHH---HHHHHHHH-HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHh-----CcCccCHH---HHHHHHHH-HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            56788888888764     344  332   22334443 4457899999999888864      234444444  22222


Q ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH
Q psy5989          84 FSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS  151 (220)
Q Consensus        84 ~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde  151 (220)
                                  +.|...|++++++     .|.+|   ....|.+..++. +++.++|+..-++++.-
T Consensus       264 ------------~~A~~~~~~al~~-----~p~~~---~~~~~l~~~~~~-~g~~~~A~~~~~~al~~  310 (365)
T 4eqf_A          264 ------------EEAVEAYTRALEI-----QPGFI---RSRYNLGISCIN-LGAYREAVSNFLTALSL  310 (365)
T ss_dssp             ------------HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-HTCCHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHhc-----CCCch---HHHHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence                        7888999998865     35443   334455555554 68999988877777653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=89.42  E-value=7.2  Score=35.66  Aligned_cols=64  Identities=5%  Similarity=-0.082  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhh
Q psy5989          96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTK  160 (220)
Q Consensus        96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~  160 (220)
                      +.|...|++++++.++-|.|.||-.+...-|.+.-|.. .++.++|..+.++++.---..+-.-.
T Consensus       315 ~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~H  378 (433)
T 3qww_A          315 SELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYS  378 (433)
T ss_dssp             HHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            67899999999999999999999999888888777666 79999999999998765554444333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=89.34  E-value=5.4  Score=29.80  Aligned_cols=107  Identities=14%  Similarity=0.085  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhh-cChHHHHHHHHHHHH--------HHHHHHHHh--cCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEIL-NSPDKACQLAKQVCA--------HYFCFYFFL--MNDP   82 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl-~~~~~A~~lAk~A~~--------d~~~~~~~~--~~~~   82 (220)
                      .+.|...|+.++++     .|.++.   ...+.+. .|.-. ++.++|....++++.        ..+..+..+  ..++
T Consensus        58 ~~~A~~~~~~a~~~-----~~~~~~---~~~~l~~-~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  128 (225)
T 2vq2_A           58 NDKAQESFRQALSI-----KPDSAE---INNNYGW-FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQ  128 (225)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHH---HHHHHHH-HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHh-----CCCChH---HHHHHHH-HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence            35677777777654     344432   2223333 34456 999999999988876        333333333  2222


Q ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          83 EFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        83 e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                                  .+.|...|+++++.     .|.+|.   ...+.+..++. .++.++|+...++++.
T Consensus       129 ------------~~~A~~~~~~~~~~-----~~~~~~---~~~~la~~~~~-~~~~~~A~~~~~~~~~  175 (225)
T 2vq2_A          129 ------------FGLAEAYLKRSLAA-----QPQFPP---AFKELARTKML-AGQLGDADYYFKKYQS  175 (225)
T ss_dssp             ------------HHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHh-----CCCCch---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence                        26778888888754     355443   23344444444 7899999888777665

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=89.13  E-value=3.4  Score=40.24  Aligned_cols=107  Identities=12%  Similarity=0.135  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      .++|...|++|+++     .|.++.   ...|.+.- |.-+++.++|...-++|+.      +.+..+..+  ..++.  
T Consensus        25 ~~eAi~~~~kAl~l-----~P~~~~---a~~nLg~~-l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~--   93 (723)
T 4gyw_A           25 IEEAVRLYRKALEV-----FPEFAA---AHSNLASV-LQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDV--   93 (723)
T ss_dssp             HHHHHHHHHHHHHH-----CSCCHH---HHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--
Confidence            56889999999874     455543   22344443 3457889999988888764      455555555  22333  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                                +.|.++|++|+++     .|.++   ....|.+.-|.+ +++.++|+..-++|+.
T Consensus        94 ----------~~A~~~~~kAl~l-----~P~~~---~a~~~Lg~~~~~-~g~~~eAi~~~~~Al~  139 (723)
T 4gyw_A           94 ----------QGALQCYTRAIQI-----NPAFA---DAHSNLASIHKD-SGNIPEAIASYRTALK  139 (723)
T ss_dssp             ----------HHHHHHHHHHHHH-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence                      7889999999864     45554   344566666665 6888888877776653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=89.07  E-value=11  Score=32.74  Aligned_cols=113  Identities=9%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------HHHHHHHh--cCCCCCCC
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------YFCFYFFL--MNDPEFSP   86 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~--~~~~e~~~   86 (220)
                      +.|...|++++.+     .|.+|.   ...+.+ ..|.-.++.++|....++++..      .+..+..+  ..++    
T Consensus       327 ~~A~~~~~~a~~~-----~~~~~~---~~~~la-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  393 (537)
T 3fp2_A          327 KNAKEDFQKAQSL-----NPENVY---PYIQLA-CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD----  393 (537)
T ss_dssp             HHHHHHHHHHHHH-----CTTCSH---HHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHh-----CCCCHH---HHHHHH-HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC----
Confidence            4566666666653     344442   122222 3344678888888888877653      44444444  2222    


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHh---------cChHHHHHHHHHHHH
Q psy5989          87 LFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEII---------NSPARACHLAKQVKY  150 (220)
Q Consensus        87 ~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl---------~~~~~A~~iAk~Afd  150 (220)
                              .+.|...|++++++....  +.-...+|..++.+..+...-         ++.++|+...++++.
T Consensus       394 --------~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          394 --------FDTAIKQYDIAKRLEEVQ--EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE  456 (537)
T ss_dssp             --------HHHHHHHHHHHHHHHHHC--SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHHHHcCCcc--hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence                    278899999998876431  222234454555555544421         777777777666654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=88.85  E-value=9.1  Score=34.60  Aligned_cols=143  Identities=13%  Similarity=0.040  Sum_probs=73.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      .+.|...|++|+++     .|.++-   ...+.+.- |.-.++.++|....++|+.      ..+..+..+  ..++.  
T Consensus         5 ~~~A~~~~~~al~~-----~p~~~~---~~~~lg~~-~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~--   73 (568)
T 2vsy_A            5 GPRELLQLRAAVRH-----RPQDFV---AWLMLADA-ELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRH--   73 (568)
T ss_dssp             ---------------------CCHH---HHHHHHHH-HHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHHHHh-----CCCCHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH--
Confidence            35677778777653     344432   22333333 3456889999999888864      344444444  22222  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCL  165 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~l  165 (220)
                                +.|...|++|+++     .|.++-   ...|.+.-++. .++.++|+..-++++...     .       
T Consensus        74 ----------~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~-~g~~~~A~~~~~~al~~~-----p-------  122 (568)
T 2vsy_A           74 ----------AEAAVLLQQASDA-----APEHPG---IALWLGHALED-AGQAEAAAAAYTRAHQLL-----P-------  122 (568)
T ss_dssp             ----------HHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-----T-------
T ss_pred             ----------HHHHHHHHHHHhc-----CCCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHhC-----C-------
Confidence                      7888899988864     455543   33455555544 688888877666654321     0       


Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHH---hhHHHHHHHHHHhHhcC
Q psy5989         166 LCEIFHTMSSSGEKEELVQRAKLAEQA---ERYDDMAAAMKAVTETG  209 (220)
Q Consensus       166 ilq~L~~~s~~s~r~~~~~~akl~eq~---ery~~m~~~~~~~~~~~  209 (220)
                                 ...+-+..++.+..+.   .+|++....+++.++.+
T Consensus       123 -----------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A          123 -----------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             -----------TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             -----------CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence                       1112334455555555   77777777777766654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=88.42  E-value=5.9  Score=30.68  Aligned_cols=107  Identities=10%  Similarity=0.135  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH--------HHHHHHHHh--cCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA--------HYFCFYFFL--MNDPE   83 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~--------d~~~~~~~~--~~~~e   83 (220)
                      .+.|...|+++++.     .|.++.   ...+.+. .|.-.++.++|....++++.        ..+..+..+  ..++ 
T Consensus        87 ~~~A~~~~~~a~~~-----~~~~~~---~~~~la~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-  156 (252)
T 2ho1_A           87 PKLADEEYRKALAS-----DSRNAR---VLNNYGG-FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKK-  156 (252)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHH---HHHHHHH-HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHH-----CcCcHH---HHHHHHH-HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCC-
Confidence            35677777777654     333332   2233333 34568899999999888876        222333333  2222 


Q ss_pred             CCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          84 FSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        84 ~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                                 .+.|...|+++++.     .|.+|.   ...+.+..++. .++.++|....++++.
T Consensus       157 -----------~~~A~~~~~~~~~~-----~~~~~~---~~~~la~~~~~-~g~~~~A~~~~~~~~~  203 (252)
T 2ho1_A          157 -----------PAQAKEYFEKSLRL-----NRNQPS---VALEMADLLYK-EREYVPARQYYDLFAQ  203 (252)
T ss_dssp             -----------HHHHHHHHHHHHHH-----CSCCHH---HHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred             -----------HHHHHHHHHHHHhc-----CcccHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence                       26788888888754     344432   23444444444 6888888877766543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=88.37  E-value=2.7  Score=30.56  Aligned_cols=52  Identities=6%  Similarity=0.030  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989          96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK  149 (220)
Q Consensus        96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af  149 (220)
                      +.|...|++|+++... .++.++.+-....|.+..+ .-+++.++|+..-++|+
T Consensus        59 ~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~lg~~~-~~~~~~~~A~~~~~kal  110 (127)
T 4gcn_A           59 AECVQFCEKAVEVGRE-TRADYKLIAKAMSRAGNAF-QKQNDLSLAVQWFHRSL  110 (127)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcc-cchhhHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHH
Confidence            5677777777776542 3344443323334445444 44789888887655554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=88.29  E-value=7.1  Score=29.83  Aligned_cols=84  Identities=8%  Similarity=0.007  Sum_probs=51.2

Q ss_pred             hhcChHHHHHHHHHHHH-----HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccc
Q psy5989          53 ILNSPDKACQLAKQVCA-----HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLAL  125 (220)
Q Consensus        53 Il~~~~~A~~lAk~A~~-----d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~L  125 (220)
                      -.++.++|....++++.     +.+..+..+  ..++.            +.|...|++++++... .+|.+|.......
T Consensus        17 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~------------~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~   83 (258)
T 3uq3_A           17 KARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEY------------ETAISTLNDAVEQGRE-MRADYKVISKSFA   83 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHH-TTCCHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccH------------HHHHHHHHHHHHhCcc-cccchHHHHHHHH
Confidence            45677777777776654     233333333  22222            7788888888887653 3444444344444


Q ss_pred             hhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989         126 NFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus       126 N~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      +.+..+. -+++.++|+..-++++.
T Consensus        84 ~l~~~~~-~~~~~~~A~~~~~~a~~  107 (258)
T 3uq3_A           84 RIGNAYH-KLGDLKKTIEYYQKSLT  107 (258)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHH-HcccHHHHHHHHHHHHh
Confidence            5555444 47888998888877766

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.23  E-value=5.6  Score=33.73  Aligned_cols=124  Identities=11%  Similarity=0.017  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH------------HHHHHHh--c
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY------------FCFYFFL--M   79 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~------------~~~~~~~--~   79 (220)
                      .+.+...|+.+.+++...  ..++.|..+..|.+-.|+ -.++.++|..+-+++....            +..+..+  .
T Consensus       111 ~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (434)
T 4b4t_Q          111 LDDQIFVCEKSIEFAKRE--KRVFLKHSLSIKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHK  187 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHS--SCCSSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHH
Confidence            356778888898888653  445667777777766555 4688899988877765321            1111111  1


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHH
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIG  154 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~  154 (220)
                      .++            .++|...|++|..++.. . +..|.-.|...+..--+|...++.++|+..-.++|+..-.
T Consensus       188 ~~~------------~~~A~~~~~~al~~~~~-~-~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~~  248 (434)
T 4b4t_Q          188 LRN------------LAKSKASLTAARTAANS-I-YCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYHN  248 (434)
T ss_dssp             TTC------------HHHHHHHHHHHHHHHHH-S-CCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hCc------------HHHHHHHHHHHHHHhhc-C-CCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhh
Confidence            122            36889999999988764 2 2223334566666666667788999999988888775443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=87.86  E-value=7.9  Score=29.86  Aligned_cols=167  Identities=6%  Similarity=-0.042  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      -+.|...|++|+++.    |+.++   ....| --..|.-+++.++|....++|+.      ..+..+..+  ..++.  
T Consensus        23 ~~~A~~~~~~al~~~----~~~~~---~~~~~-~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~--   92 (228)
T 4i17_A           23 YAVAFEKYSEYLKLT----NNQDS---VTAYN-CGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNN--   92 (228)
T ss_dssp             HHHHHHHHHHHHHHT----TTCCH---HHHHH-HHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHHHhcc----CCCCc---HHHHH-HHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccH--
Confidence            457788888887653    22444   22233 34455678999999999888864      334444444  22232  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcch---hc-ccchhHHHHHHHhcChHHHHHHHHHHHHHHHH-------
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIR---LG-LALNFSVFYYEIINSPARACHLAKQVKYSCIG-------  154 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pir---LG-L~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~-------  154 (220)
                                +.|...|++++++     .|.+|..   ++ ...+.+..++. +++.++|+..-++|+...-.       
T Consensus        93 ----------~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~  156 (228)
T 4i17_A           93 ----------QEYIATLTEGIKA-----VPGNATIEKLYAIYYLKEGQKFQQ-AGNIEKAEENYKHATDVTSKKWKTDAL  156 (228)
T ss_dssp             ----------HHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSSCHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHhHHHHH-hccHHHHHHHHHHHHhcCCCcccHHHH
Confidence                      7888889888853     5777732   11 22334444444 68989988887777542111       


Q ss_pred             -hhhhhhhhh-hHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989         155 -ASRDTKRSV-CLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETG  209 (220)
Q Consensus       155 -eld~~~~d~-~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~~  209 (220)
                       .+-..+-+. ..+++.   ...+.......+........+.|++-....++.++..
T Consensus       157 ~~l~~~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~  210 (228)
T 4i17_A          157 YSLGVLFYNNGADVLRK---ATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS  210 (228)
T ss_dssp             HHHHHHHHHHHHHHHHH---HGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH---HHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence             111111100 011111   1111111223344444555677888888888877653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=87.80  E-value=9  Score=30.44  Aligned_cols=169  Identities=10%  Similarity=0.128  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHH---hhcChHHHHHHHHHHHH----HHHHHHHHhc-CCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYE---ILNSPDKACQLAKQVCA----HYFCFYFFLM-NDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yE---Il~~~~~A~~lAk~A~~----d~~~~~~~~~-~~~e~~   85 (220)
                      .++|...|++|.+       |.+|.   ...|....|+.   +.++.++|...-++|..    ..+..+..+- .+..  
T Consensus        22 ~~~A~~~~~~a~~-------~~~~~---a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~--   89 (273)
T 1ouv_A           22 FTQAKKYFEKACD-------LKENS---GCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQG--   89 (273)
T ss_dssp             HHHHHHHHHHHHH-------TTCHH---HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSS--
T ss_pred             HHHHHHHHHHHHH-------CCCHH---HHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCC--
Confidence            4567777777765       33332   22334444443   37888999888887753    3344444441 1100  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHH---HhcChHHHHHHHHHHHHHH----HHhhhh
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE---IINSPARACHLAKQVKYSC----IGASRD  158 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yE---Il~~~~~A~~iAk~AfdeA----i~eld~  158 (220)
                           -..-.++|...|++|++.       .+|   ....|.+..|..   +.+++++|+..-++|.+..    ...+-.
T Consensus        90 -----~~~~~~~A~~~~~~a~~~-------~~~---~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  154 (273)
T 1ouv_A           90 -----VSQNTNKALQYYSKACDL-------KYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGS  154 (273)
T ss_dssp             -----SCCCHHHHHHHHHHHHHT-------TCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -----cccCHHHHHHHHHHHHHc-------CCc---cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                 011136788888888753       122   233455666555   3688888888877776522    111111


Q ss_pred             hh-------hhhhHHHHHhhcccccchhHHHHHHHHHHHH----HhhHHHHHHHHHHhHhcC
Q psy5989         159 TK-------RSVCLLCEIFHTMSSSGEKEELVQRAKLAEQ----AERYDDMAAAMKAVTETG  209 (220)
Q Consensus       159 ~~-------~d~~lilq~L~~~s~~s~r~~~~~~akl~eq----~ery~~m~~~~~~~~~~~  209 (220)
                      .+       .|-..-+..++.-.....-+-...++.+-.+    ..+|++-....++.++.+
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  216 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  216 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence            11       1111111222222222334556667777667    778888888887776654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=87.22  E-value=14  Score=31.97  Aligned_cols=171  Identities=12%  Similarity=0.084  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHHhh--cCCCCCccc---cccccchhHHHHHhhcChHHHHHHHHHHHH-----HHHHHHHHhc--CCCCC
Q psy5989          17 SQKAYQQAFEISKS--KMQPTHPIR---LGLALNFSVFYYEILNSPDKACQLAKQVCA-----HYFCFYFFLM--NDPEF   84 (220)
Q Consensus        17 a~~aYq~A~eiA~~--~L~pt~Pir---LGLaLN~SVF~yEIl~~~~~A~~lAk~A~~-----d~~~~~~~~~--~~~e~   84 (220)
                      +.+.|.+|...-..  ...|.+|--   ++.++..--..|...++.++|....++++.     ..+..+..+.  .++. 
T Consensus       214 a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-  292 (537)
T 3fp2_A          214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENS-  292 (537)
T ss_dssp             HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCC-
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCH-
Confidence            33445555544332  345666532   444555555566778999999999988875     3455555552  2233 


Q ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh-------
Q psy5989          85 SPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR-------  157 (220)
Q Consensus        85 ~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld-------  157 (220)
                                 +.|...|++++++     .|.+|.   ...+.+..++ -.++.++|+...++++...-...+       
T Consensus       293 -----------~~A~~~~~~~~~~-----~~~~~~---~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~  352 (537)
T 3fp2_A          293 -----------QEFFKFFQKAVDL-----NPEYPP---TYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLAC  352 (537)
T ss_dssp             -----------HHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHH
T ss_pred             -----------HHHHHHHHHHhcc-----CCCCHH---HHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                       6788888888764     355443   2344444444 478999999888877653211111       


Q ss_pred             -----hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989         158 -----DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETG  209 (220)
Q Consensus       158 -----~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~~  209 (220)
                           .-+.++..+++...... -..-+-...++.+..+..+|++-....+++++.+
T Consensus       353 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          353 LLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence                 11222322222222211 1233466778888888899999999888877653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=86.86  E-value=12  Score=31.04  Aligned_cols=120  Identities=10%  Similarity=0.099  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH-----------HHHHHHHh--cC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH-----------YFCFYFFL--MN   80 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d-----------~~~~~~~~--~~   80 (220)
                      .+.|...|++|++++...-.+.+|.......|.+..++ -.++.++|....++++..           .+..+..+  ..
T Consensus       109 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~  187 (373)
T 1hz4_A          109 LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR  187 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence            45788899999998875444445654444455555554 458999999999888653           23333333  22


Q ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccch-hHHHHHHHhcChHHHHHHHHHHH
Q psy5989          81 DPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALN-FSVFYYEIINSPARACHLAKQVK  149 (220)
Q Consensus        81 ~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN-~SVF~yEIl~~~~~A~~iAk~Af  149 (220)
                      |+.            +.|...|+++..+...   +.+|..+...++ .-+..+--.+++++|....+++.
T Consensus       188 g~~------------~~A~~~l~~a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          188 GDL------------DNARSQLNRLENLLGN---GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             TCH------------HHHHHHHHHHHHHHTT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             CCH------------HHHHHHHHHHHHHHhc---cCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            222            6778888888877643   222211111111 11223445678887777766553

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=85.83  E-value=15  Score=31.00  Aligned_cols=49  Identities=12%  Similarity=0.174  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchhccc-chhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLA-LNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~-LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      +.|...|+++++     +.|.+|..+.-. .+.+.. |.-.++.++|+...+++..
T Consensus       274 ~~A~~~~~~~l~-----~~p~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~a~~  323 (450)
T 2y4t_A          274 TDATSKYESVMK-----TEPSIAEYTVRSKERICHC-FSKDEKPVEAIRVCSEVLQ  323 (450)
T ss_dssp             HHHHHHHHHHHH-----HCCSSHHHHHHHHHHHHHH-HHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-----cCCcchHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHH
Confidence            566667777664     356676543333 333333 4446888888877777654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=85.69  E-value=7.1  Score=31.04  Aligned_cols=79  Identities=11%  Similarity=0.113  Sum_probs=46.1

Q ss_pred             HHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhc
Q psy5989          51 YEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLG  122 (220)
Q Consensus        51 yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLG  122 (220)
                      |.-.++.++|....++++.      ..+..+..+  ..++            .+.|...|++++++     .|.+|.   
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~------------~~~A~~~~~~~~~~-----~~~~~~---  207 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNN------------YDSAAANLRRAVEL-----RPDDAQ---  207 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHH-----CTTCHH---
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcc------------HHHHHHHHHHHHHh-----CCCcHH---
Confidence            3445667777777776653      233333333  2222            26777888877754     344442   


Q ss_pred             ccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989         123 LALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus       123 L~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      ...+.+..++. .++.++|+...++++.
T Consensus       208 ~~~~l~~~~~~-~~~~~~A~~~~~~a~~  234 (327)
T 3cv0_A          208 LWNKLGATLAN-GNRPQEALDAYNRALD  234 (327)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            23444555544 7888888887777654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=85.23  E-value=4  Score=29.66  Aligned_cols=80  Identities=16%  Similarity=0.179  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      -+.|...|++|+++     .|.+|.   +..|.+.- |--+++.++|+...++|+.      ..+..+..+  ..++.  
T Consensus        29 ~~~A~~~~~~al~~-----~p~~~~---~~~~~~~~-~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~--   97 (126)
T 4gco_A           29 YPTAMRHYNEAVKR-----DPENAI---LYSNRAAC-LTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREW--   97 (126)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHH---HHHHHHHH-HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHHHHh-----CCCCHH---HHHHHhhH-HHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCCH--
Confidence            46788889988864     455553   23344443 3467899999998888864      334444444  22222  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPI  119 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pi  119 (220)
                                +.|...|++|+++     .|.||-
T Consensus        98 ----------~~A~~~~~~al~l-----~P~~~~  116 (126)
T 4gco_A           98 ----------SKAQRAYEDALQV-----DPSNEE  116 (126)
T ss_dssp             ----------HHHHHHHHHHHHH-----CTTCHH
T ss_pred             ----------HHHHHHHHHHHHH-----CcCCHH
Confidence                      7889999999864     577763

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=84.86  E-value=3.3  Score=32.64  Aligned_cols=105  Identities=18%  Similarity=0.191  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH-----HHHHHHHHh--cCCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA-----HYFCFYFFL--MNDPEFSP   86 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~-----d~~~~~~~~--~~~~e~~~   86 (220)
                      .+.|...|++|+++     .|.+|.   ..+|.+.. |.-+++.++|+..-++|+.     ..+..+..+  ..++.   
T Consensus       100 ~~~A~~~~~~al~~-----~P~~~~---~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~---  167 (217)
T 2pl2_A          100 LEQALSVLKDAERV-----NPRYAP---LHLQRGLV-YALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRL---  167 (217)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHH---HHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH---
T ss_pred             HHHHHHHHHHHHHh-----CcccHH---HHHHHHHH-HHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCH---
Confidence            56777778777753     555553   22344443 3467889999998888865     344444444  22333   


Q ss_pred             CccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHH
Q psy5989          87 LFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV  148 (220)
Q Consensus        87 ~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~A  148 (220)
                               +.|...|++++++     .|.+|   .+..|.+..+.. .++.++|+...+++
T Consensus       168 ---------~~A~~~~~~al~~-----~P~~~---~~~~~la~~~~~-~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          168 ---------DEALAQYAKALEQ-----APKDL---DLRVRYASALLL-KGKAEEAARAAALE  211 (217)
T ss_dssp             ---------HHHHHHHHHHHHH-----STTCH---HHHHHHHHHHTC---------------
T ss_pred             ---------HHHHHHHHHHHHh-----CCCCh---HHHHHHHHHHHH-ccCHHHHHHHHHHH
Confidence                     7788899988863     56665   334455554444 57777777665543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=84.47  E-value=15  Score=29.90  Aligned_cols=118  Identities=8%  Similarity=-0.012  Sum_probs=70.2

Q ss_pred             chhHHHHHhhcChHHHHHHHHHHHH--------HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCC
Q psy5989          45 NFSVFYYEILNSPDKACQLAKQVCA--------HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQ  114 (220)
Q Consensus        45 N~SVF~yEIl~~~~~A~~lAk~A~~--------d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~  114 (220)
                      +...++  -.++.++|....++++.        ..+..+..+  ..++.            +.|...|++++.+     .
T Consensus       187 ~~~~~~--~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~------------~~A~~~~~~al~~-----~  247 (368)
T 1fch_A          187 ILGSLL--SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEY------------DKAVDCFTAALSV-----R  247 (368)
T ss_dssp             TTHHHH--HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHH-----C
T ss_pred             HHHHHh--hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCH------------HHHHHHHHHHHHh-----C
Confidence            344444  67888999888887753        333333443  22222            6788888888764     4


Q ss_pred             CCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhh
Q psy5989         115 PTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAER  194 (220)
Q Consensus       115 pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~er  194 (220)
                      |.+|.   ...+.+..+.. .++.++|+..-++++..     +   .               ..-.-+..++.+..+..+
T Consensus       248 ~~~~~---~~~~l~~~~~~-~g~~~~A~~~~~~al~~-----~---~---------------~~~~~~~~l~~~~~~~g~  300 (368)
T 1fch_A          248 PNDYL---LWNKLGATLAN-GNQSEEAVAAYRRALEL-----Q---P---------------GYIRSRYNLGISCINLGA  300 (368)
T ss_dssp             TTCHH---HHHHHHHHHHH-TTCHHHHHHHHHHHHHH-----C---T---------------TCHHHHHHHHHHHHHHTC
T ss_pred             cCCHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHh-----C---C---------------CcHHHHHHHHHHHHHCCC
Confidence            55543   33445554444 78888888777766542     1   0               011224456666666777


Q ss_pred             HHHHHHHHHHhHhc
Q psy5989         195 YDDMAAAMKAVTET  208 (220)
Q Consensus       195 y~~m~~~~~~~~~~  208 (220)
                      |++-....+++++.
T Consensus       301 ~~~A~~~~~~al~~  314 (368)
T 1fch_A          301 HREAVEHFLEALNM  314 (368)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            77777777766553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=83.81  E-value=11  Score=27.83  Aligned_cols=143  Identities=15%  Similarity=0.140  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------HHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------YFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~--~~~~e~~   85 (220)
                      .+.|...|++|+++     .|.||--   ..+.+ ..|.-+++.++|....+.+...      .+..+..+  ..++   
T Consensus        21 ~~~A~~~~~~al~~-----~p~~~~~---~~~la-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---   88 (184)
T 3vtx_A           21 FDGAIRAYKKVLKA-----DPNNVET---LLKLG-KTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDE---   88 (184)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHHH---HHHHH-HHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHh-----CCCCHHH---HHHHH-HHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCC---
Confidence            56788899998864     5666532   12222 2345678889988887776432      22222222  1111   


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhhH
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCL  165 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~l  165 (220)
                               .+.+...+++|..     +.|.+|.   ...+.+..++. +++.++|+..-++++..     +.       
T Consensus        89 ---------~~~a~~~~~~a~~-----~~~~~~~---~~~~lg~~~~~-~g~~~~A~~~~~~~l~~-----~p-------  138 (184)
T 3vtx_A           89 ---------KQAAIDALQRAIA-----LNTVYAD---AYYKLGLVYDS-MGEHDKAIEAYEKTISI-----KP-------  138 (184)
T ss_dssp             ---------HHHHHHHHHHHHH-----HCTTCHH---HHHHHHHHHHH-TTCHHHHHHHHHHHHHH-----CT-------
T ss_pred             ---------HHHHHHHHHHHHH-----hCccchH---HHHHHHHHHHH-hCCchhHHHHHHHHHHh-----cc-------
Confidence                     2566777777764     3455553   23334444444 68888887776655431     11       


Q ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989         166 LCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETG  209 (220)
Q Consensus       166 ilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~~  209 (220)
                                 ..-+-+..++.+-.+..+|++-+.+.+++++..
T Consensus       139 -----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          139 -----------GFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             -----------hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCC
Confidence                       111235567777778889999999998887754

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=83.25  E-value=18  Score=35.07  Aligned_cols=149  Identities=11%  Similarity=0.044  Sum_probs=85.5

Q ss_pred             CccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHH
Q psy5989          36 HPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFD  107 (220)
Q Consensus        36 ~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~e  107 (220)
                      +|-.-....|...-| .-+++.++|+..-++|+.      ..+..+..+  ..++.            +.|..+|++|++
T Consensus         5 ~P~~a~al~nLG~~~-~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~------------~eA~~~~~~Al~   71 (723)
T 4gyw_A            5 CPTHADSLNNLANIK-REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL------------QEALMHYKEAIR   71 (723)
T ss_dssp             -CHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH------------HHHHHHHHHHHH
Confidence            343333344455444 457889999999888874      455555555  22333            789999999986


Q ss_pred             HHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH------HHHhhhhh------hhhhh-HHHHHhhccc
Q psy5989         108 IAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS------CIGASRDT------KRSVC-LLCEIFHTMS  174 (220)
Q Consensus       108 iA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde------Ai~eld~~------~~d~~-lilq~L~~~s  174 (220)
                      +     .|.++   ....|.+.-+.+ +++.++|+..-++|+.-      |...+-..      +.++. .+-+.|.-.-
T Consensus        72 l-----~P~~~---~a~~nLg~~l~~-~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P  142 (723)
T 4gyw_A           72 I-----SPTFA---DAYSNMGNTLKE-MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP  142 (723)
T ss_dssp             H-----CTTCH---HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             h-----CCCCH---HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4     45554   345566666666 68999988877776531      11111111      11111 1111111111


Q ss_pred             ccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         175 SSGEKEELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       175 ~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                        ..-+-+..++.+-.+..+|++-.+.++++++.
T Consensus       143 --~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l  174 (723)
T 4gyw_A          143 --DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSI  174 (723)
T ss_dssp             --CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             --CChHHHhhhhhHHHhcccHHHHHHHHHHHHHh
Confidence              22345666777777777888888877777664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=82.74  E-value=11  Score=27.95  Aligned_cols=106  Identities=17%  Similarity=0.227  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      +++|..+|+.|..     .+|.+|.   ..++.+..|++ +++.++|...-++|+.      ..+..+..+  ..++.  
T Consensus        13 ~e~ai~~~~~a~~-----~~p~~~~---~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~--   81 (150)
T 4ga2_A           13 VERYIASVQGSTP-----SPRQKSI---KGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT--   81 (150)
T ss_dssp             HHHHHHHHHHHSC-----SHHHHHT---THHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHhcc-----cCcccHH---HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch--
Confidence            5677777776643     2333443   33455555554 6889999998888764      344555555  22333  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHH
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV  148 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~A  148 (220)
                                +.|..+|++|+++     .|.+|.   ...|.+..++..-+..+.|....++|
T Consensus        82 ----------~~A~~~~~~al~~-----~p~~~~---~~~~la~~~~~~~~~~~aa~~~~~~a  126 (150)
T 4ga2_A           82 ----------DKAVECYRRSVEL-----NPTQKD---LVLKIAELLCKNDVTDGRAKYWVERA  126 (150)
T ss_dssp             ----------HHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHHHCSSSSHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                      7889999999864     466654   45677777777543333333333443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=82.55  E-value=17  Score=28.88  Aligned_cols=30  Identities=7%  Similarity=0.037  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989         180 EELVQRAKLAEQAERYDDMAAAMKAVTETG  209 (220)
Q Consensus       180 ~~~~~~akl~eq~ery~~m~~~~~~~~~~~  209 (220)
                      .-+..++.+..+..+|++-....+++++.+
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  266 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVLI  266 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence            355667777777888888888877776643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=81.96  E-value=8  Score=29.84  Aligned_cols=93  Identities=11%  Similarity=0.131  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH-------------HHHHHHHHh--
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA-------------HYFCFYFFL--   78 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~-------------d~~~~~~~~--   78 (220)
                      .+.|...|++|++     +.|.+|.   ...+.+. .|.-+++.++|....++++.             ..+..+..+  
T Consensus        58 ~~~A~~~~~~al~-----~~p~~~~---~~~~l~~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~  128 (228)
T 4i17_A           58 YKEAADYFDIAIK-----KNYNLAN---AYIGKSA-AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQ  128 (228)
T ss_dssp             HHHHHHHHHHHHH-----TTCSHHH---HHHHHHH-HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-----hCcchHH---HHHHHHH-HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHH
Confidence            3566777777763     4455432   2233333 34567899999998888875             223333333  


Q ss_pred             cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHH
Q psy5989          79 MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYE  133 (220)
Q Consensus        79 ~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yE  133 (220)
                      ..++            .++|...|++|++     +.|.+. ......|.+..|+.
T Consensus       129 ~~~~------------~~~A~~~~~~al~-----~~p~~~-~~~~~~~l~~~~~~  165 (228)
T 4i17_A          129 QAGN------------IEKAEENYKHATD-----VTSKKW-KTDALYSLGVLFYN  165 (228)
T ss_dssp             HTTC------------HHHHHHHHHHHTT-----SSCHHH-HHHHHHHHHHHHHH
T ss_pred             Hhcc------------HHHHHHHHHHHHh-----cCCCcc-cHHHHHHHHHHHHH
Confidence            2222            2678888888764     334400 33444555555554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=81.92  E-value=20  Score=31.95  Aligned_cols=108  Identities=9%  Similarity=0.146  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------HHHHHHHh---cCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------YFCFYFFL---MNDPEF   84 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~---~~~~e~   84 (220)
                      .+.|...|+.|++     ++|.+|..  +-+++..|+. -.++.++|..+-++|+..      .+.-..-+   ..++. 
T Consensus       337 ~~~A~~~~~~al~-----~~p~~~~~--~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~-  407 (530)
T 2ooe_A          337 YEKVHSIYNRLLA-----IEDIDPTL--VYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDK-  407 (530)
T ss_dssp             HHHHHHHHHHHHH-----SSSSCHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCH-
T ss_pred             HHHHHHHHHHHhC-----ccccCchH--HHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCCh-
Confidence            4567777777764     35555421  3344555533 345566666666666542      11111111   12222 


Q ss_pred             CCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          85 SPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        85 ~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                                 +.|...|+.|++.     .|.+|   .+.++|.-|+.. .++.++|..+-++|..
T Consensus       408 -----------~~A~~~~e~al~~-----~p~~~---~~~~~~~~~~~~-~g~~~~Ar~~~~~al~  453 (530)
T 2ooe_A          408 -----------SVAFKIFELGLKK-----YGDIP---EYVLAYIDYLSH-LNEDNNTRVLFERVLT  453 (530)
T ss_dssp             -----------HHHHHHHHHHHHH-----HTTCH---HHHHHHHHHHTT-TTCHHHHHHHHHHHHH
T ss_pred             -----------hHHHHHHHHHHHH-----CCCCH---HHHHHHHHHHHh-CCCHhhHHHHHHHHHh
Confidence                       5666666666653     24443   344666665544 4666667666666655

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=81.75  E-value=10  Score=26.02  Aligned_cols=49  Identities=18%  Similarity=0.213  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      +.|...|+.++.     +.|.+|......++.+.-++. +++.++|+..-++++.
T Consensus        56 ~~A~~~~~~~~~-----~~p~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           56 QLAEAQFRDLVS-----RYPTHDKAAGGLLKLGLSQYG-EGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHHHHHHHHH-----HCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-----HCCCCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Confidence            677888888775     357776655555566665554 7888887776655543

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=81.25  E-value=15  Score=27.78  Aligned_cols=46  Identities=7%  Similarity=-0.062  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          96 EDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        96 e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      +.|...|++|+++     .|.++   ...++.+..++. +++.++|+..-++++.
T Consensus       105 ~~A~~~~~~al~~-----~p~~~---~~~~~lg~~~~~-~~~~~~A~~~~~~al~  150 (198)
T 2fbn_A          105 PKAIDHASKVLKI-----DKNNV---KALYKLGVANMY-FGFLEEAKENLYKAAS  150 (198)
T ss_dssp             HHHHHHHHHHHHH-----STTCH---HHHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-----CcccH---HHHHHHHHHHHH-cccHHHHHHHHHHHHH
Confidence            6788888888864     34444   334555655554 6888888777666553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=81.07  E-value=8.9  Score=28.17  Aligned_cols=55  Identities=20%  Similarity=0.276  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHHHHhcC---CCC-------CcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH
Q psy5989          96 EDSQKAYQEAFDIAKSKM---QPT-------HPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS  151 (220)
Q Consensus        96 e~a~~aYq~A~eiA~~~L---~pt-------~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde  151 (220)
                      +.|...|++|+.+.....   .|.       +|....+..|.+.-|+. +++.++|+..+.+|+.-
T Consensus        28 ~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~al~~   92 (162)
T 3rkv_A           28 KEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSEVLKR   92 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhc
Confidence            788899999998754321   233       56677778888877666 68999988888777643

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=81.01  E-value=16  Score=27.68  Aligned_cols=165  Identities=8%  Similarity=0.075  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      .+.|...|+++++     ..|.++.   ...+. ...|...++.++|....++++.      ..+..+..+  ..++.  
T Consensus        39 ~~~A~~~~~~~l~-----~~~~~~~---~~~~l-a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~--  107 (243)
T 2q7f_A           39 YEKAAEAFTKAIE-----ENKEDAI---PYINF-ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMY--  107 (243)
T ss_dssp             ---CCTTHHHHHT-----TCTTCHH---HHHHH-HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHHHH-----hCcccHH---HHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccH--
Confidence            3455566666653     3343332   11122 2233456777777777766654      233334443  22222  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh--------
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGASR--------  157 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld--------  157 (220)
                                +.|...|++++++     .|.+|.   ...+.+..++ -.++.++|+...++++...-...+        
T Consensus       108 ----------~~A~~~~~~~~~~-----~~~~~~---~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  168 (243)
T 2q7f_A          108 ----------KEAKDMFEKALRA-----GMENGD---LFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMC  168 (243)
T ss_dssp             ----------HHHHHHHHHHHHH-----TCCSHH---HHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence                      5667777777653     233332   2333344333 367777777777666543211111        


Q ss_pred             ----hhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhHHHHHHHHHHhHhcC
Q psy5989         158 ----DTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERYDDMAAAMKAVTETG  209 (220)
Q Consensus       158 ----~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery~~m~~~~~~~~~~~  209 (220)
                          .-+.++...++...... -..-.-+..++.+..+..+|++-....+++++..
T Consensus       169 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          169 LANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence                11222222222211111 1223456777888888888888888888877643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	220
d2o8pa1	220	a.118.7.1 (A:8-227) 14-3-3 domain containing prote	2e-25
d2o8pa1	220	a.118.7.1 (A:8-227) 14-3-3 domain containing prote	3e-25
d2o8pa1	220	a.118.7.1 (A:8-227) 14-3-3 domain containing prote	1e-09
d1o9da_	236	a.118.7.1 (A:) 14-3-3-like protein C {Common tobac	1e-21
d1o9da_	236	a.118.7.1 (A:) 14-3-3-like protein C {Common tobac	1e-20
d1o9da_	236	a.118.7.1 (A:) 14-3-3-like protein C {Common tobac	3e-11
d2o02a1	230	a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus)	1e-21
d2o02a1	230	a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus)	3e-21
d2o02a1	230	a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus)	1e-12
d3efza1	223	a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cry	1e-19
d3efza1	223	a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cry	2e-19

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} Length = 220

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

 Score = 96.9 bits (241), Expect = 2e-25
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 90  CSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK 149
             L  +EDS+K +Q+AF +          + LG   N +    E      +  ++   + 
Sbjct: 134 FGLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLG 193

Query: 150 YSCIGA-------SRDTKRSVCLL 166
                         R  + +V L 
Sbjct: 194 KILELQIKEQENMDRKAQITVYLQ 217

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} Length = 220

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

 Score = 96.5 bits (240), Expect = 3e-25
 Identities = 10/59 (16%), Positives = 20/59 (33%)

Query: 13  VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY 71
            ++DS+K +Q AF +          + LG   N +    E      +   +   +    
Sbjct: 138 SLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 196

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} Length = 220

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETG 209
           E+     RA++ E    +D M  A+K++    
Sbjct: 3   ERLLQKYRAQVFEWGGCFDKMFEALKSLIYLS 34

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 236

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 35/56 (62%), Positives = 44/56 (78%)

Query: 13  VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVC 68
             + +  AY+ A +I+ +++ PTHPIRLGLALNFSVFYYEILNSPD+AC LAKQ  
Sbjct: 146 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAF 201

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 236

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 84.1 bits (208), Expect = 1e-20
 Identities = 37/54 (68%), Positives = 44/54 (81%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
             E +  AY+ A DIA +++ PTHPIRLGLALNFSVFYYEI+NSP RAC+LAKQ
Sbjct: 146 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQ 199

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 236

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 16/31 (51%), Positives = 22/31 (70%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTET 208
            +EE V  AKLAEQAERY++M   M+ V+ +
Sbjct: 3   AREENVYMAKLAEQAERYEEMVEFMEKVSNS 33

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.8 bits (215), Expect = 1e-21
 Identities = 45/54 (83%), Positives = 50/54 (92%)

Query: 13  VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQ 66
           +VD SQ+AYQ+AFEISK +MQPTHPIRLGLALNFSVFYYEILNSP+KAC LAK 
Sbjct: 141 IVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKT 194

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.1 bits (213), Expect = 3e-21
 Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 5/133 (3%)

Query: 19  KAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFL 78
            + +Q  E ++ K Q     R  +         ++L+  +K   +     A    FY  +
Sbjct: 63  SSIEQKTEGAEKKQQMAREYREKIETELRDICNDVLSLLEKFL-IPNASQAESKVFYLKM 121

Query: 79  MNDPEF--SPLFPCS--LAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEI 134
             D     + +        +V+ SQ+AYQEAF+I+K +MQPTHPIRLGLALNFSVFYYEI
Sbjct: 122 KGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEI 181

Query: 135 INSPARACHLAKQ 147
           +NSP +AC LAK 
Sbjct: 182 LNSPEKACSLAKT 194

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.6 bits (152), Expect = 1e-12
 Identities = 27/34 (79%), Positives = 30/34 (88%)

Query: 178 EKEELVQRAKLAEQAERYDDMAAAMKAVTETGVE 211
           +K ELVQ+AKLAEQAERYDDMAA MK+VTE G E
Sbjct: 2   DKNELVQKAKLAEQAERYDDMAACMKSVTEQGAE 35

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]} Length = 223

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

 Score = 81.1 bits (200), Expect = 1e-19
 Identities = 14/65 (21%), Positives = 35/65 (53%), Gaps = 4/65 (6%)

Query: 4   DGDEPQEGAVVDDSQKAYQQAFEISKSKMQ--PTHPIRLGLALNFSVFYYEILNSPDKAC 61
             +E  +   +  + + Y+ A +  +S ++  P+ P+ L   LN+++  Y++L +P+ A 
Sbjct: 115 KDEEKNQ--CIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAM 172

Query: 62  QLAKQ 66
           + A +
Sbjct: 173 KFANR 177

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]} Length = 223

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

 Score = 81.1 bits (200), Expect = 2e-19
 Identities = 12/56 (21%), Positives = 31/56 (55%), Gaps = 2/56 (3%)

Query: 94  VVEDSQKAYQEAFDIAKSKMQ--PTHPIRLGLALNFSVFYYEIINSPARACHLAKQ 147
            ++ + + Y++A    +S ++  P+ P+ L   LN+++  Y+++ +P  A   A +
Sbjct: 122 CIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANR 177

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	220
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	99.98
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	99.98
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	99.97
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	99.96
d2o02a1	230	zeta isoform {Cow (Bos taurus) [TaxId: 9913]}	99.85
d3efza1	223	14-3-3 protein cgd1_2980 {Cryptosporidium parvum [	99.85
d1o9da_	236	14-3-3-like protein C {Common tobacco (Nicotiana t	99.85
d2o8pa1	220	14-3-3 domain containing protein cgd7_2470 {Crypto	99.8
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	93.79
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	92.68
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	89.46
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	88.32
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	88.02
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	86.69
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	86.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	85.71
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	84.17
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	84.08
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	83.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	82.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	81.83

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.98  E-value=7.8e-34  Score=245.01  Aligned_cols=104  Identities=42%  Similarity=0.698  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHH
Q psy5989          68 CAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQ  147 (220)
Q Consensus        68 ~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~  147 (220)
                      -||++||++++..+++       |++++++|+++|++|+++|+++||||||+||||+||||||||||++++++||++|++
T Consensus       122 kgDy~RY~aE~~~~~e-------~~~~~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~  194 (230)
T d2o02a1         122 KGDYYRYLAEVAAGDD-------KKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKT  194 (230)
T ss_dssp             HHHHHHHHHHTCCHHH-------HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             cccHHHHHHHhcCcHH-------HHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHH
Confidence            3559999999988877       999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh----hhhhhhhHHHHHhhcccccch
Q psy5989         148 VKYSCIGASR----DTKRSVCLLCEIFHTMSSSGE  178 (220)
Q Consensus       148 AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~  178 (220)
                      |||+|++++|    ++|+|+|+|||+|||+.++|+
T Consensus       195 afd~ai~~l~~l~ee~y~ds~~ImqlLrdNl~lW~  229 (230)
T d2o02a1         195 AFDEAIAELDTLSEESYKDSTLIMQLLRDNLTLWT  229 (230)
T ss_dssp             HHHHHHTTGGGCCTTTHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHhc
Confidence            9999999987    889999999999999887663

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.98  E-value=2e-33  Score=243.39  Aligned_cols=114  Identities=39%  Similarity=0.623  Sum_probs=103.4

Q ss_pred             hhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccc
Q psy5989          46 FSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLAL  125 (220)
Q Consensus        46 ~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~L  125 (220)
                      --|||+.+.+|              +|||++++..+++       |++++++|.++|+.|+++|+++|+||||+||||+|
T Consensus       119 skvFy~KmkgD--------------yyRYlaE~~~~~e-------~~~~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaL  177 (236)
T d1o9da_         119 SKVFYLKMKGD--------------YHRYLAEFKTGAE-------RKEAAESTLTAYKAAQDIATTELAPTHPIRLGLAL  177 (236)
T ss_dssp             HHHHHHHHHHH--------------HHHHHHHHCCSHH-------HHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             hHHHHHHhhch--------------HHHHHHHhcCchh-------HHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            56888888776              9999999999987       89999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhcChHHHHHHHHHHHHHHHHhhh----hhhhhhhHHHHHhhcccccchhH
Q psy5989         126 NFSVFYYEIINSPARACHLAKQVKYSCIGASR----DTKRSVCLLCEIFHTMSSSGEKE  180 (220)
Q Consensus       126 N~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld----~~~~d~~lilq~L~~~s~~s~r~  180 (220)
                      |||||||||++++++||++|++|||+|++++|    ++|+|+++|||+|||+..+|..|
T Consensus       178 N~SVF~yEi~~~~~~A~~lak~afd~ai~~~d~l~ee~~~ds~~i~qLLrdNl~lW~~e  236 (236)
T d1o9da_         178 NFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSD  236 (236)
T ss_dssp             HHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTC-
T ss_pred             hHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCChhhHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999997    78999999999999999888653

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=99.97  E-value=1.3e-32  Score=236.73  Aligned_cols=131  Identities=16%  Similarity=0.287  Sum_probs=110.1

Q ss_pred             HHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHH
Q psy5989          22 QQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCSLAVVEDSQKA  101 (220)
Q Consensus        22 q~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k~~~~e~a~~a  101 (220)
                      ++.+++-...|.|....      ---|||+.+.+|              +|||++++..+++       |++++++|+++
T Consensus        77 ~dii~lid~~Lip~~~~------eskvFY~KmKgD--------------YyRYlaE~~~~~e-------~~~~~~~a~~a  129 (223)
T d3efza1          77 EDVIRIIDDNLLMYSEE------GARAFCIKLKGD--------------LMRYKAEILKDEE-------KNQCIKQAVEF  129 (223)
T ss_dssp             HHHHHHHHHHTGGGCCH------HHHHHHHHHHHH--------------HHHHHHTTCCHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCh------HHHHHHHHHhch--------------HHHHHHHHcCcHH-------HHHHHHHHHHH
Confidence            33444444455554332      236999988776              9999999988877       99999999999


Q ss_pred             HHHHHHHHHh--cCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHHHhh----hhhhhhhhHHHHHhhcccc
Q psy5989         102 YQEAFDIAKS--KMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCIGAS----RDTKRSVCLLCEIFHTMSS  175 (220)
Q Consensus       102 Yq~A~eiA~~--~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~el----d~~~~d~~lilq~L~~~s~  175 (220)
                      |+.|+++|++  .|+|||||||||+||||||||||+|+|++||+||++|||++ .++    |++|+|+++|||+|||+..
T Consensus       130 Y~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~-~~~~~~~e~~~~ds~~ImqLLrDNlt  208 (223)
T d3efza1         130 YEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAA-ENSRSDSEQFSENTEKLLKILRDNVS  208 (223)
T ss_dssp             HHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH-HHTCCC--CCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhccccchhhhHHHHHHHHHHHHHHH
Confidence            9999999988  57899999999999999999999999999999999999865 454    3789999999999999998


Q ss_pred             cchhH
Q psy5989         176 SGEKE  180 (220)
Q Consensus       176 ~s~r~  180 (220)
                      +|..+
T Consensus       209 lW~~~  213 (223)
T d3efza1         209 QWEQG  213 (223)
T ss_dssp             HHTTT
T ss_pred             HhhCc
Confidence            88776

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=99.96  E-value=3.7e-29  Score=214.62  Aligned_cols=126  Identities=13%  Similarity=0.108  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccc
Q psy5989          12 AVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMNDPEFSPLFPCS   91 (220)
Q Consensus        12 ~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~~~e~~~~~~~k   91 (220)
                      .+...-..--++.+++-...|.| +|.       --|||+.+.+|              +|||++++..+..        
T Consensus        90 ~i~~el~~~c~~i~~lid~~L~~-~~e-------skVFY~KmKGD--------------YyRYlaE~~~~~~--------  139 (220)
T d2o8pa1          90 SLRKDIKAFLQSFEDCVDRLVEK-SFF-------SKFFKLKVKSD--------------ISRYKLEFGLCSL--------  139 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCC-SHH-------HHHHHHHHHHH--------------HHHHHHHTTSSCH--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC-ChH-------HHHHHHHHhhH--------------HHHHHHHHhcchH--------
Confidence            33334444445555555555655 442       57999988877              9999999966644        


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHH---HHHHHHhhhhhhhh--hhHH
Q psy5989          92 LAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQV---KYSCIGASRDTKRS--VCLL  166 (220)
Q Consensus        92 ~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~A---fdeAi~eld~~~~d--~~li  166 (220)
                          ++|.++|++|+++|+++|+||||+||||+||||||+|||+++|++||.+|++|   ||+||+++|.+..|  ++.|
T Consensus       140 ----~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~~ld~l~ees~~~~~  215 (220)
T d2o8pa1         140 ----EDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIKEQENMDRKAQITVY  215 (220)
T ss_dssp             ----HHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHH
Confidence                78999999999999999999999999999999999999999999999999999   99999999976555  4799


Q ss_pred             HHHhh
Q psy5989         167 CEIFH  171 (220)
Q Consensus       167 lq~L~  171 (220)
                      +|.|+
T Consensus       216 lq~~~  220 (220)
T d2o8pa1         216 LQGIK  220 (220)
T ss_dssp             HHHHC
T ss_pred             HHhcC
Confidence            99885

>d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: zeta isoform
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=2e-22  Score=173.13  Aligned_cols=71  Identities=63%  Similarity=0.966  Sum_probs=67.8

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHH
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFY   75 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~   75 (220)
                      .+|++|++++++|.++|++|+++|+++|+||||+||||+||||||||||+|++++||++|++||++....+
T Consensus       133 ~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai~~l  203 (230)
T d2o02a1         133 AAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAIAEL  203 (230)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHTTG
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            57889999999999999999999999999999999999999999999999999999999999999998744

>d3efza1 a.118.7.1 (A:46-268) 14-3-3 protein cgd1_2980 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 protein cgd1 2980
species: Cryptosporidium parvum [TaxId: 5807]

Probab=99.85  E-value=1.5e-22  Score=173.62  Aligned_cols=68  Identities=19%  Similarity=0.438  Sum_probs=63.4

Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHhh--cCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHH
Q psy5989           4 DGDEPQEGAVVDDSQKAYQQAFEISKS--KMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHY   71 (220)
Q Consensus         4 ~~~~~~r~~~~e~a~~aYq~A~eiA~~--~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~   71 (220)
                      ..+|++|++++++|++||+.|.++|++  +|+|||||||||+||||||||||+|+|++||.+|++||+..
T Consensus       113 ~~~~~e~~~~~~~a~~aY~~A~~~a~~~l~l~pt~PirLGLaLN~SVF~YEi~~~~~~A~~lAk~Afd~~  182 (223)
T d3efza1         113 ILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQAA  182 (223)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HcCcHHHHHHHHHHHHHHHHHHHHHHhhhccCccCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            457899999999999999999999988  56899999999999999999999999999999999999743

>d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3-like protein C
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.85  E-value=3.6e-22  Score=172.22  Aligned_cols=76  Identities=47%  Similarity=0.740  Sum_probs=70.9

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhcC
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFCFYFFLMN   80 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~~~~~~~~   80 (220)
                      .+|++|++++++|.++|+.|+++|..+|+|||||||||+||||||||||+|++++||++|++||++....+-.+..
T Consensus       138 ~~~~e~~~~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~ai~~~d~l~e  213 (236)
T d1o9da_         138 KTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGE  213 (236)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             cCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhcCCh
Confidence            5788999999999999999999999999999999999999999999999999999999999999999987765543

>d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: 14-3-3 protein
family: 14-3-3 protein
domain: 14-3-3 domain containing protein cgd7 2470
species: Cryptosporidium parvum [TaxId: 5807]

Probab=99.80  E-value=6.9e-21  Score=162.77  Aligned_cols=60  Identities=17%  Similarity=0.225  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHH---HHHHHH
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQV---CAHYFC   73 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A---~~d~~~   73 (220)
                      .++|.++|++|+++|+++|+|||||||||+||||||||||+|+|++||.+|++|   |++...
T Consensus       139 ~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~  201 (220)
T d2o8pa1         139 LEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIK  201 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999999999999999   666655

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.48  Score=37.53  Aligned_cols=117  Identities=6%  Similarity=-0.074  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------------HHHHHHHHhc---
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------------HYFCFYFFLM---   79 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------------d~~~~~~~~~---   79 (220)
                      ++|..+|++|.++....   .+|...+-+++----.|.-++++++|...-++++.            ..+..+.++-   
T Consensus        54 ~~A~~~y~kA~~~~~~~---~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~  130 (290)
T d1qqea_          54 NLAGDSFLKAADYQKKA---GNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND  130 (290)
T ss_dssp             HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhH
Confidence            57889999999987642   23333444444434456668899999988887764            3344444431   


Q ss_pred             CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcc-cchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          80 NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGL-ALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        80 ~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL-~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                      .++.            +.|...|++|+++....   .+|...+. .+|.+..+.. +++.++|+.+-+++..
T Consensus       131 ~~~~------------~~A~~~~~~A~~l~~~~---~~~~~~~~~~~~la~~~~~-~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         131 LHDY------------AKAIDCYELAGEWYAQD---QSVALSNKCFIKCADLKAL-DGQYIEASDIYSKLIK  186 (290)
T ss_dssp             TCCH------------HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHH------------HHHHHHHHHHHHHHHhc---CchhhhhhHHHHHHHHHHH-cChHHHHHHHHHHHHH
Confidence            2333            78899999999987642   23333333 4455555544 7899999987766543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=92.68  E-value=1.3  Score=33.22  Aligned_cols=120  Identities=11%  Similarity=-0.006  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHHHHH------------HHHHh--cC
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAHYFC------------FYFFL--MN   80 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~~~------------~~~~~--~~   80 (220)
                      +.|...|++|++    ..|+.+|.....+++.--..|..+++.++|...-+.++...-.            .+..+  ..
T Consensus        29 ~~A~~~~~~aL~----~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (366)
T d1hz4a_          29 DEAERLAKLALE----ELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQ  104 (366)
T ss_dssp             HHHHHHHHHHHH----TCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh----hCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Confidence            456667777654    2355555444455554445666889999999988877653221            11111  11


Q ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHH
Q psy5989          81 DPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYS  151 (220)
Q Consensus        81 ~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afde  151 (220)
                      ++            ...+...|..++.+......+.+|..-....+.+..++. .++.+.|.....++.+.
T Consensus       105 ~~------------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~  162 (366)
T d1hz4a_         105 GF------------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA-WARLDEAEASARSGIEV  162 (366)
T ss_dssp             TC------------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             HH------------HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHH-hcchhhhHHHHHHHHHH
Confidence            22            367888899999988876666666554444555555554 67888777776665543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=89.46  E-value=3.1  Score=30.98  Aligned_cols=122  Identities=11%  Similarity=0.057  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHHH----------HHHHHHHh--cCCC
Q psy5989          15 DDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH----------YFCFYFFL--MNDP   82 (220)
Q Consensus        15 e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d----------~~~~~~~~--~~~~   82 (220)
                      ..+...+..+..+...  ...+|-....+++....++...+++++|....+.++..          ....++.+  ..++
T Consensus       189 ~~a~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  266 (366)
T d1hz4a_         189 DNARSQLNRLENLLGN--GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE  266 (366)
T ss_dssp             HHHHHHHHHHHHHHTT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHH--hcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence            4566677777766543  33344444555666666778888999988877665421          11112221  1222


Q ss_pred             CCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHHHHH
Q psy5989          83 EFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKYSCI  153 (220)
Q Consensus        83 e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~AfdeAi  153 (220)
                                  .+.|...+++++.+++.  .+.+|......++.+..|+. .+++++|+..-++|+.-+-
T Consensus       267 ------------~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         267 ------------FEPAEIVLEELNENARS--LRLMSDLNRNLLLLNQLYWQ-AGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             ------------HHHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHH
T ss_pred             ------------HHHHHHHHHHHHHHHhh--cccChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhh
Confidence                        26888899999888774  34555555555666766665 6999999999888876543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.32  E-value=0.43  Score=34.11  Aligned_cols=82  Identities=10%  Similarity=0.084  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHH--hhcChHHHHHHHHHHHH--------HHHHHHHHh--cC
Q psy5989          13 VVDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYE--ILNSPDKACQLAKQVCA--------HYFCFYFFL--MN   80 (220)
Q Consensus        13 ~~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yE--Il~~~~~A~~lAk~A~~--------d~~~~~~~~--~~   80 (220)
                      -.++|.+.|++|+.+     .   |.......||++++..  -.++.++|+.+-++++.        +.+.++..+  ..
T Consensus        14 ~l~~Ae~~Y~~aL~~-----~---p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~   85 (122)
T d1nzna_          14 DLLKFEKKFQSEKAA-----G---SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL   85 (122)
T ss_dssp             HHHHHHHHHHHHHHH-----S---CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh-----C---CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHH
Confidence            367888999998864     2   3444566788888763  45677789999888874        244455555  44


Q ss_pred             CCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy5989          81 DPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPI  119 (220)
Q Consensus        81 ~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pi  119 (220)
                      |+.            +.|..+|++++++     .|.|+-
T Consensus        86 g~~------------~~A~~~~~~aL~~-----~P~~~~  107 (122)
T d1nzna_          86 KEY------------EKALKYVRGLLQT-----EPQNNQ  107 (122)
T ss_dssp             TCH------------HHHHHHHHHHHHH-----CTTCHH
T ss_pred             hhh------------HHHHHHHHHHHHh-----CcCCHH
Confidence            555            8999999999964     588774

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.02  E-value=0.7  Score=33.53  Aligned_cols=106  Identities=11%  Similarity=0.015  Sum_probs=55.2

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHhhcCCCCCcc---ccccccchhHHH---HHhhcChHHHHHHHHHHHH------HHH
Q psy5989           5 GDEPQEGAVVDDSQKAYQQAFEISKSKMQPTHPI---RLGLALNFSVFY---YEILNSPDKACQLAKQVCA------HYF   72 (220)
Q Consensus         5 ~~~~~r~~~~e~a~~aYq~A~eiA~~~L~pt~Pi---rLGLaLN~SVF~---yEIl~~~~~A~~lAk~A~~------d~~   72 (220)
                      +++-+|-..-++|...|+.|++     +.|.||-   .+|.+|...--+   .+-++..++|+..-++|+.      +.+
T Consensus         4 ~~~~~r~~~fe~A~~~~e~al~-----~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~   78 (145)
T d1zu2a1           4 ETEFDRILLFEQIRQDAENTYK-----SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAV   78 (145)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHH-----HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHccHHHHHHHHHHHHh-----hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHH
Confidence            4555777778899999999986     3577774   466655321111   1223333455555554441      122


Q ss_pred             HHHHHhc-CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Q psy5989          73 CFYFFLM-NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIR  120 (220)
Q Consensus        73 ~~~~~~~-~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pir  120 (220)
                      ..+..+- ...++.+........-++|.++|++|++     +.|.|+..
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~-----l~P~~~~~  122 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-----EQPDNTHY  122 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-----HCTTCHHH
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc-----cCCCHHHH
Confidence            2222110 0000011111233445788889998885     46887754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.69  E-value=1.3  Score=31.79  Aligned_cols=80  Identities=18%  Similarity=0.144  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      -++|...|++|+++     .|.+|.   .-.|.++-|+ -+++.++|+..-++|+.      ..+..+..+  .-++.  
T Consensus        26 y~~A~~~~~~al~~-----~p~~~~---~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~--   94 (159)
T d1a17a_          26 YENAIKFYSQAIEL-----NPSNAI---YYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF--   94 (159)
T ss_dssp             HHHHHHHHHHHHHH-----STTCHH---HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHhhhcccc-----chhhhh---hhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH--
Confidence            34678888888764     344433   3455555554 45899999999988875      444444444  33333  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPI  119 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pi  119 (220)
                                +.|..+|++|+.     +.|.||.
T Consensus        95 ----------~eA~~~~~~a~~-----~~p~~~~  113 (159)
T d1a17a_          95 ----------RAALRDYETVVK-----VKPHDKD  113 (159)
T ss_dssp             ----------HHHHHHHHHHHH-----HSTTCHH
T ss_pred             ----------HHHHHHHHHHHH-----cCCCCHH
Confidence                      678888998875     4677765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.08  E-value=3.9  Score=31.32  Aligned_cols=109  Identities=13%  Similarity=0.136  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      ...+...|++|+.+     .|.++.. -...+.+ ..+.-.++.++|+..-++++.      ..+..+..+  ..++   
T Consensus       152 ~~~a~~~~~~al~~-----~p~~~~~-~~~~~l~-~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---  221 (323)
T d1fcha_         152 FLEVKELFLAAVRL-----DPTSIDP-DVQCGLG-VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQ---  221 (323)
T ss_dssp             HHHHHHHHHHHHHH-----STTSCCH-HHHHHHH-HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHH-----hhccccc-ccchhhH-HHHHHHHHHhhhhcccccccccccccccchhhhhhccccccc---
Confidence            45667777777653     3433221 1111222 244567899999988888763      334444444  2232   


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHHH
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVKY  150 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Afd  150 (220)
                               .++|.+.|++|+++     .|.||.   ...|.++.|+. +++.++|+..-++|+.
T Consensus       222 ---------~~~A~~~~~~al~~-----~p~~~~---a~~~lg~~~~~-~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         222 ---------SEEAVAAYRRALEL-----QPGYIR---SRYNLGISCIN-LGAHREAVEHFLEALN  268 (323)
T ss_dssp             ---------HHHHHHHHHHHHHH-----CTTCHH---HHHHHHHHHHH-HTCHHHHHHHHHHHHH
T ss_pred             ---------chhHHHHHHHHHHH-----hhccHH---HHHHHHHHHHH-CCCHHHHHHHHHHHHH
Confidence                     27889999998864     577764   33556666666 6888887766555544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=85.71  E-value=0.98  Score=33.06  Aligned_cols=88  Identities=11%  Similarity=0.132  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHHHhhcCCC-------CCccccccccchhHHHHHhhcChHHHHHHHHHHHHH------HHHHHHHh--
Q psy5989          14 VDDSQKAYQQAFEISKSKMQP-------THPIRLGLALNFSVFYYEILNSPDKACQLAKQVCAH------YFCFYFFL--   78 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~p-------t~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~d------~~~~~~~~--   78 (220)
                      .+.|...|++|+.+.......       .+|+++.+.+|-++-|+ -+++.++|+..+.+++.-      .+.....+  
T Consensus        31 ~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~  109 (168)
T d1kt1a1          31 YVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANEKGLYRRGEAQL  109 (168)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchHHHHHHHHHHHH
Confidence            457899999999875432222       23344555566666555 489999999999888752      22222222  


Q ss_pred             cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcc
Q psy5989          79 MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPI  119 (220)
Q Consensus        79 ~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pi  119 (220)
                      .-++            .+.|...|++|++     +.|.||.
T Consensus       110 ~l~~------------~~~A~~~~~~al~-----l~P~n~~  133 (168)
T d1kt1a1         110 LMNE------------FESAKGDFEKVLE-----VNPQNKA  133 (168)
T ss_dssp             HTTC------------HHHHHHHHHHHHH-----SCTTCHH
T ss_pred             HcCC------------HHHHHHHHHHHHH-----hCCCCHH
Confidence            1222            3778888888774     6788875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.17  E-value=3.5  Score=28.09  Aligned_cols=81  Identities=20%  Similarity=0.292  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      -+.|...|++|+++     .|.+|.   +..|.++ .|.-+++.++|+....+++.      ..+..+..+  .-++.  
T Consensus        19 ~~eAi~~~~~al~~-----~p~~~~---~~~~~a~-~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~--   87 (117)
T d1elwa_          19 IDDALQCYSEAIKL-----DPHNHV---LYSNRSA-AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF--   87 (117)
T ss_dssp             HHHHHHHHHHHHHH-----CTTCHH---HHHHHHH-HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH--
T ss_pred             HHHHHHHHHHHHhc-----CCcchh---hhhcccc-cccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH--
Confidence            45788888888763     566664   3334444 44568999999999888864      334444444  23333  


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcch
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIR  120 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~Pir  120 (220)
                                +.|..+|++|+     .+.|.||--
T Consensus        88 ----------~~A~~~~~~a~-----~~~p~~~~~  107 (117)
T d1elwa_          88 ----------EEAKRTYEEGL-----KHEANNPQL  107 (117)
T ss_dssp             ----------HHHHHHHHHHH-----TTCTTCHHH
T ss_pred             ----------HHHHHHHHHHH-----HhCCCCHHH
Confidence                      78899999887     467888753

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=84.08  E-value=4.6  Score=28.69  Aligned_cols=90  Identities=13%  Similarity=0.106  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCcccc----ccccchhHHHHHhhcChHHHHHHHHHHHHHH-----------------H
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRL----GLALNFSVFYYEILNSPDKACQLAKQVCAHY-----------------F   72 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirL----GLaLN~SVF~yEIl~~~~~A~~lAk~A~~d~-----------------~   72 (220)
                      -+.|...|++|+++.. +++..+++..    +.++|----.|.-+++.++|..-..+|+.-+                 +
T Consensus        25 y~~Ai~~y~~Al~i~~-~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~  103 (156)
T d2hr2a1          25 YDEAAANCRRAMEISH-TMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAV  103 (156)
T ss_dssp             HHHHHHHHHHHHHHHT-TSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCh-hhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHH
Confidence            5689999999999885 4666555432    1222211223456788888887777776432                 1


Q ss_pred             HHHHHh--cCCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCCC
Q psy5989          73 CFYFFL--MNDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTH  117 (220)
Q Consensus        73 ~~~~~~--~~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~  117 (220)
                      ..+..+  .-+.            -+.|...|++|+++..+ .+...
T Consensus       104 ~~~g~~~~~lg~------------~eeA~~~~~~Al~l~~~-~~~~~  137 (156)
T d2hr2a1         104 YSRALALDGLGR------------GAEAMPEFKKVVEMIEE-RKGET  137 (156)
T ss_dssp             HHHHHHHHHTTC------------HHHHHHHHHHHHHHHHH-CCSCC
T ss_pred             hhhHHHHHHHHH------------HHHHHHHHHHHHHhhHH-hhchH
Confidence            112222  2222            27899999999998763 33433

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.66  E-value=3.5  Score=31.29  Aligned_cols=106  Identities=16%  Similarity=0.154  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHhhcCCCCCccccccccchhHHHHHhhcChHHHHHHHHHHHH------HHHHHHHHh--cCCCCCC
Q psy5989          14 VDDSQKAYQQAFEISKSKMQPTHPIRLGLALNFSVFYYEILNSPDKACQLAKQVCA------HYFCFYFFL--MNDPEFS   85 (220)
Q Consensus        14 ~e~a~~aYq~A~eiA~~~L~pt~PirLGLaLN~SVF~yEIl~~~~~A~~lAk~A~~------d~~~~~~~~--~~~~e~~   85 (220)
                      .+.|...|++|++     +.|.+|.-   ..+.+. .|.-.++.++|...-+.+..      ..+..+..+  ..++   
T Consensus       253 ~~~A~~~~~~al~-----~~p~~~~~---~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---  320 (388)
T d1w3ba_         253 IDLAIDTYRRAIE-----LQPHFPDA---YCNLAN-ALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGN---  320 (388)
T ss_dssp             HHHHHHHHHHHHH-----TCSSCHHH---HHHHHH-HHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---
T ss_pred             HHHHHHHHHHHHH-----hCCCCHHH---HHHHHH-HHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCC---
Confidence            3456666666654     34555432   112222 33456777777777665544      233333333  1122   


Q ss_pred             CCccccHHHHHHHHHHHHHHHHHHHhcCCCCCcchhcccchhHHHHHHHhcChHHHHHHHHHHH
Q psy5989          86 PLFPCSLAVVEDSQKAYQEAFDIAKSKMQPTHPIRLGLALNFSVFYYEIINSPARACHLAKQVK  149 (220)
Q Consensus        86 ~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt~PirLGL~LN~SVF~yEIl~~~~~A~~iAk~Af  149 (220)
                               .+.|...|++|++     +.|.+|.   ...|.+..++ -.++.++|+..-++|+
T Consensus       321 ---------~~~A~~~~~~al~-----~~p~~~~---~~~~la~~~~-~~g~~~~A~~~~~~al  366 (388)
T d1w3ba_         321 ---------IEEAVRLYRKALE-----VFPEFAA---AHSNLASVLQ-QQGKLQEALMHYKEAI  366 (388)
T ss_dssp             ---------HHHHHHHHHHHTT-----SCTTCHH---HHHHHHHHHH-TTTCCHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHHH-----hCCCCHH---HHHHHHHHHH-HcCCHHHHHHHHHHHH
Confidence                     2567777777763     4565543   2344444444 4688888877655554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.68  E-value=8.3  Score=29.31  Aligned_cols=28  Identities=11%  Similarity=0.068  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHhHhc
Q psy5989         181 ELVQRAKLAEQAERYDDMAAAMKAVTET  208 (220)
Q Consensus       181 ~~~~~akl~eq~ery~~m~~~~~~~~~~  208 (220)
                      -+..++.+-....+|++-+...+++++.
T Consensus       208 ~~~~lg~~~~~~g~~~~A~~~~~~al~~  235 (323)
T d1fcha_         208 LWNKLGATLANGNQSEEAVAAYRRALEL  235 (323)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhhhhhcccccccchhHHHHHHHHHHH
Confidence            3445666666667777777777666653

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.83  E-value=9.5  Score=29.43  Aligned_cols=126  Identities=9%  Similarity=0.051  Sum_probs=71.5

Q ss_pred             HHhhcChHHHHHHHHHHHH------------HHHHHHHHhc--CCCCCCCCccccHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy5989          51 YEILNSPDKACQLAKQVCA------------HYFCFYFFLM--NDPEFSPLFPCSLAVVEDSQKAYQEAFDIAKSKMQPT  116 (220)
Q Consensus        51 yEIl~~~~~A~~lAk~A~~------------d~~~~~~~~~--~~~e~~~~~~~k~~~~e~a~~aYq~A~eiA~~~L~pt  116 (220)
                      |...++.++|...-.+|..            ..+..+..+-  .++.            +.|..+|++|+++....   .
T Consensus        47 y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~------------~~A~~~~~~a~~~~~~~---~  111 (290)
T d1qqea_          47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNS------------VNAVDSLENAIQIFTHR---G  111 (290)
T ss_dssp             HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHT---T
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCc------------HHHHHHHHHhhHHhhhc---c
Confidence            5677777777777666544            3445455552  2222            67899999999988752   2


Q ss_pred             Ccchhccc-chhHHHHHHHhcChHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHhhcccccchhHHHHHHHHHHHHHhhH
Q psy5989         117 HPIRLGLA-LNFSVFYYEIINSPARACHLAKQVKYSCIGASRDTKRSVCLLCEIFHTMSSSGEKEELVQRAKLAEQAERY  195 (220)
Q Consensus       117 ~PirLGL~-LN~SVF~yEIl~~~~~A~~iAk~AfdeAi~eld~~~~d~~lilq~L~~~s~~s~r~~~~~~akl~eq~ery  195 (220)
                      +|....-+ .+...-++.-++++++|+..-++|.+-.-.  +...   .....            -+..++.+.-+..+|
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~--~~~~---~~~~~------------~~~~la~~~~~~g~y  174 (290)
T d1qqea_         112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ--DQSV---ALSNK------------CFIKCADLKALDGQY  174 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--TTCH---HHHHH------------HHHHHHHHHHHTTCH
T ss_pred             cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHh--cCch---hhhhh------------HHHHHHHHHHHcChH
Confidence            33333333 333333444468999999887776542211  1111   11111            133455566666777


Q ss_pred             HHHHHHHHHhHhc
Q psy5989         196 DDMAAAMKAVTET  208 (220)
Q Consensus       196 ~~m~~~~~~~~~~  208 (220)
                      ++-....++++..
T Consensus       175 ~~A~~~~~~~~~~  187 (290)
T d1qqea_         175 IEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777776654