Psyllid ID: psy6027

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-
MCMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNKEKARKKKKIESHVKKI
ccccccccccHHHHHHHHHcccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHcccccccccccccccHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHccc
ccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHcccccHEEEcHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccHHHHcHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHcHcccccccHHHHcccHHHHHHHHHHcccccHHHHHHHHHHccccccEEcHcEEcc
mcmncfsrfrprykrlvdnifplspeeglvktNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESldpdlqilatnsfvrfanieedtpsyhrryDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFnmqesghyqspadpepeaeetgkmmnlqedppaLAETCLRELMSRasfnhvknviqpvlihfdhhalwnpniFATHVLRMLMYSVQSQYSHLIVNCILAYlndhhsspslIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALtsttlsdsqKYNLHALVAALFTLvplvspitniRDYVNKTIAARQEHKTYHLLPELREFAanlpdyqkTEILVFIISKVLSTtyresnksEHTLVQNMFMKSLLMVSGKYtclhissafplaFLEPLLKILQSNDAEIRLLVNKEKARKKKKIESHVKKI
mcmncfsrfrprykrlvdnifplspeeglvktnMEKLTFYalsspekldRIGEYLYqrasrdisrrRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYadvtkrnklrlagirgiqgvirktvsDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIaasesigptVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALtsttlsdsqKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVnkekarkkkkieshvkki
MCMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRakiadalskiisiaasesiGPtvlevlyttltllCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNkekarkkkkieshvkkI
***NCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFN**********************************ETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLV******************
*C*****RFRPRYKRLVDNIFP**************LTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALC*********RNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFN******************************PALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLN************IADALSKIISI****SIGPTVLEVLYTTLTLLC**********************************YNLHALVAALFTLVPLVSPITN*******************LLPELREFAANLPDYQKTEILVFII********************NMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLV******************
MCMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES****************GKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNKE***************
MCMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQES***********************EDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNKEKARKKKKIESH*K*I
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MCMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNKEKARKKKKIESHVKKI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query531 2.2.26 [Sep-21-2011]
Q6ZQ18 817 Protein EFR3 homolog B OS yes N/A 0.866 0.563 0.481 1e-133
Q14156 821 Protein EFR3 homolog A OS yes N/A 0.862 0.557 0.481 1e-132
Q9Y2G0 817 Protein EFR3 homolog B OS no N/A 0.866 0.563 0.473 1e-132
Q8IGJ0 834 Protein EFR3 homolog cmp4 yes N/A 0.838 0.533 0.480 1e-132
Q8BG67 819 Protein EFR3 homolog A OS no N/A 0.858 0.556 0.481 1e-131
Q5SPP5 816 Protein EFR3 homolog B OS no N/A 0.868 0.564 0.479 1e-130
Q641A2 819 Protein EFR3 homolog A OS N/A N/A 0.873 0.566 0.475 1e-126
Q620W3 859 Protein EFR3 homolog OS=C N/A N/A 0.849 0.525 0.405 2e-97
Q09263 859 Protein EFR3 homolog OS=C yes N/A 0.845 0.522 0.405 1e-93
Q6FUG0 749 Protein EFR3 OS=Candida g yes N/A 0.199 0.141 0.297 9e-09
>sp|Q6ZQ18|EFR3B_MOUSE Protein EFR3 homolog B OS=Mus musculus GN=Efr3b PE=1 SV=2 Back     alignment and function desciption
 Score =  474 bits (1220), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 250/519 (48%), Positives = 341/519 (65%), Gaps = 59/519 (11%)

Query: 4   NCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDI 63
            C    RPRYKRLVDNIFP  PE+GLVKTNMEKLTFYALS+PEKLDRIG YL +R  RD+
Sbjct: 6   GCCGALRPRYKRLVDNIFPEDPEDGLVKTNMEKLTFYALSAPEKLDRIGAYLSERLIRDV 65

Query: 64  SRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRF 123
            R R GYV IAMEA+DQLL ACH Q++NLFVESFLK+V KLLES  P+LQIL TNSFV+F
Sbjct: 66  GRHRYGYVCIAMEALDQLLMACHCQSINLFVESFLKMVAKLLESEKPNLQILGTNSFVKF 125

Query: 124 ANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVE 183
           ANIEEDTPSYHR YDFFVS+FS +CHS++ D+  + K+R++GI+G+QGV+RKTV+D+L  
Sbjct: 126 ANIEEDTPSYHRSYDFFVSRFSEMCHSSHDDLEIKTKIRMSGIKGLQGVVRKTVNDELQA 185

Query: 184 NIWESTHMEKIIPSLLFNMQ--ESGHYQSPADPE-PEAEETGKMMNLQEDPPALAETCLR 240
           NIW+  HM+KI+PSLLFN+Q  E    +SP+  + PE E        +E+P  LAE CLR
Sbjct: 186 NIWDPQHMDKIVPSLLFNLQHVEEAESRSPSPLQAPEKE--------KENPAELAERCLR 237

Query: 241 ELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAY 300
           EL+ RA+F ++KN I+PVLIH D+H+LW P +FAT   +++MYS+Q Q+SHL++  +L++
Sbjct: 238 ELLGRAAFGNIKNAIKPVLIHLDNHSLWEPKVFATRCFKIIMYSIQPQHSHLVIQQLLSH 297

Query: 301 LNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFI 360
           L+ +  S + +RA I + LS+   IAA+ S+GPTVLE+  T L  L +        +D+ 
Sbjct: 298 LDANSRSAATVRAGIVEVLSEAAIIAATGSVGPTVLEMFNTLLRQLRLS-------IDYA 350

Query: 361 RVIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKT 420
                   ++L S  + + ++         +F            ++ V KTI +      
Sbjct: 351 LTGSYDGAVSLGSKIIKEHEE--------CMF------------QEAVIKTIGS------ 384

Query: 421 YHLLPELREFAANLPDYQKTEILVFIISKV-LSTTYR-----ESNKSEHTLVQNMFMKSL 474
                    FA+ LP YQ++E+++FI+SKV L + +       + ++ + L Q M +KSL
Sbjct: 385 ---------FASTLPTYQRSEVILFIMSKVPLPSVHHPVETGRTGENRNRLTQIMLLKSL 435

Query: 475 LMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLV 513
           L VS  + C ++ SA P  FL+ LL      DAEIRL V
Sbjct: 436 LQVSTGFQCNNMMSALPSNFLDRLLSTALMEDAEIRLFV 474

Mus musculus (taxid: 10090)
>sp|Q14156|EFR3A_HUMAN Protein EFR3 homolog A OS=Homo sapiens GN=EFR3A PE=1 SV=2 Back     alignment and function description
>sp|Q9Y2G0|EFR3B_HUMAN Protein EFR3 homolog B OS=Homo sapiens GN=EFR3B PE=1 SV=2 Back     alignment and function description
>sp|Q8IGJ0|EFR3_DROME Protein EFR3 homolog cmp44E OS=Drosophila melanogaster GN=stmA PE=2 SV=3 Back     alignment and function description
>sp|Q8BG67|EFR3A_MOUSE Protein EFR3 homolog A OS=Mus musculus GN=Efr3a PE=1 SV=1 Back     alignment and function description
>sp|Q5SPP5|EFR3B_DANRE Protein EFR3 homolog B OS=Danio rerio GN=efr3b PE=3 SV=2 Back     alignment and function description
>sp|Q641A2|EFR3A_XENLA Protein EFR3 homolog A OS=Xenopus laevis GN=efr3a PE=2 SV=1 Back     alignment and function description
>sp|Q620W3|EFR3_CAEBR Protein EFR3 homolog OS=Caenorhabditis briggsae GN=CBG02625 PE=3 SV=1 Back     alignment and function description
>sp|Q09263|EFR3_CAEEL Protein EFR3 homolog OS=Caenorhabditis elegans GN=C32D5.3 PE=3 SV=1 Back     alignment and function description
>sp|Q6FUG0|EFR3_CANGA Protein EFR3 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=EFR3 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
332020343 836 Protein EFR3-like protein cmp44E [Acromy 0.845 0.537 0.541 1e-154
345494907 798 PREDICTED: protein EFR3 homolog cmp44E-l 0.843 0.561 0.544 1e-153
307197018 795 Protein EFR3-like protein cmp44E [Harpeg 0.843 0.563 0.540 1e-153
383865170 899 PREDICTED: protein EFR3 homolog cmp44E-l 0.839 0.496 0.544 1e-153
340728867 798 PREDICTED: protein EFR3 homolog cmp44E-l 0.845 0.562 0.539 1e-153
156555215 823 PREDICTED: protein EFR3 homolog cmp44E-l 0.843 0.544 0.544 1e-153
340728865 823 PREDICTED: protein EFR3 homolog cmp44E-l 0.845 0.545 0.539 1e-153
350420191 823 PREDICTED: protein EFR3 homolog cmp44E-l 0.845 0.545 0.539 1e-153
380011363 794 PREDICTED: LOW QUALITY PROTEIN: protein 0.838 0.560 0.542 1e-153
110771563 795 PREDICTED: protein EFR3 homolog cmp44E i 0.843 0.563 0.541 1e-153
>gi|332020343|gb|EGI60765.1| Protein EFR3-like protein cmp44E [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 281/519 (54%), Positives = 354/519 (68%), Gaps = 70/519 (13%)

Query: 2   CMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASR 61
           C  C +  RPRYKRLVDNIFP++P++GL+K NMEKLTFY+LSSPEKLDRIGEYL+QRASR
Sbjct: 43  CCWCCAALRPRYKRLVDNIFPVNPQDGLIKNNMEKLTFYSLSSPEKLDRIGEYLFQRASR 102

Query: 62  DISRRRNGYVVIAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFV 121
           DI RRRNG+VVIAMEAMDQLL ACH+QTLNLFVESFLK+VQKLLES DP LQILAT SFV
Sbjct: 103 DIYRRRNGFVVIAMEAMDQLLVACHAQTLNLFVESFLKMVQKLLESTDPQLQILATQSFV 162

Query: 122 RFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDDL 181
           RFANIEEDTPSYH RYDFFVSK+SA+CHSN  D T R ++RLAGI+G+QGV+RKT+SDDL
Sbjct: 163 RFANIEEDTPSYHTRYDFFVSKYSAMCHSNNDDPTTRKQIRLAGIQGLQGVVRKTLSDDL 222

Query: 182 VENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRE 241
           VENIWE  HM+KI+PSLL+NMQ S  Y    D  P++    +      DPP  AETC+RE
Sbjct: 223 VENIWEPVHMDKIVPSLLYNMQNS-RYADKEDTTPDSPTEER-----SDPPQFAETCMRE 276

Query: 242 LMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYL 301
           L+ RASF H++ VI+PVL H D+H LW PN FA H  R++M+S+QSQYS+ +V  ++ +L
Sbjct: 277 LIGRASFGHIRCVIRPVLRHLDNHHLWVPNYFAIHTFRIIMFSIQSQYSYTVVEALMTHL 336

Query: 302 NDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIR 361
           +DH  S   IR  IAD LSKIISIAA ES+GP+VLE++ + L+ L +             
Sbjct: 337 DDHSKSSPKIRTSIADTLSKIISIAAGESVGPSVLEIINSLLSHLRV------------- 383

Query: 362 VIMRIQEIALTSTTLSDSQKYNLHALVAALFTLVPLVSPITNIRDYVNKTIAARQEHKTY 421
                  +    ++ SD Q Y   AL+ A                               
Sbjct: 384 ------SVTRNQSSSSDEQLYQ-EALINA------------------------------- 405

Query: 422 HLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNK-----SEHTLVQNMFMKSLLM 476
                L EFA +LPDYQK EI++FI+SKV    Y + ++         L+Q++ +KSLL 
Sbjct: 406 -----LGEFANHLPDYQKIEIMMFIMSKV---PYSQPDRIVSVGKGDVLLQSILLKSLLK 457

Query: 477 VSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNK 515
           V  KY  +H+++ FP +FL+PLL++  + DAE+RLLV K
Sbjct: 458 VGTKYQTIHLNTTFPPSFLDPLLRMSLAADAEMRLLVQK 496

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345494907|ref|XP_003427397.1| PREDICTED: protein EFR3 homolog cmp44E-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307197018|gb|EFN78390.1| Protein EFR3-like protein cmp44E [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383865170|ref|XP_003708048.1| PREDICTED: protein EFR3 homolog cmp44E-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340728867|ref|XP_003402734.1| PREDICTED: protein EFR3 homolog cmp44E-like isoform 2 [Bombus terrestris] Back     alignment and taxonomy information
>gi|156555215|ref|XP_001599882.1| PREDICTED: protein EFR3 homolog cmp44E-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340728865|ref|XP_003402733.1| PREDICTED: protein EFR3 homolog cmp44E-like isoform 1 [Bombus terrestris] Back     alignment and taxonomy information
>gi|350420191|ref|XP_003492429.1| PREDICTED: protein EFR3 homolog cmp44E-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|380011363|ref|XP_003689777.1| PREDICTED: LOW QUALITY PROTEIN: protein EFR3 homolog cmp44E-like [Apis florea] Back     alignment and taxonomy information
>gi|110771563|ref|XP_001120727.1| PREDICTED: protein EFR3 homolog cmp44E isoform 1 [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query531
FB|FBgn0086784 834 stmA "stambha A" [Drosophila m 0.568 0.362 0.619 7.7e-116
MGI|MGI:2444851 817 Efr3b "EFR3 homolog B (S. cere 0.613 0.399 0.571 6.9e-115
UNIPROTKB|E2RCW6 821 EFR3A "Uncharacterized protein 0.572 0.370 0.600 6.2e-112
UNIPROTKB|Q14156 821 EFR3A "Protein EFR3 homolog A" 0.572 0.370 0.600 1.6e-111
MGI|MGI:1923990 819 Efr3a "EFR3 homolog A (S. cere 0.572 0.371 0.594 1.5e-110
RGD|1305976 819 Efr3a "EFR3 homolog A (S. cere 0.572 0.371 0.594 1.9e-110
UNIPROTKB|E1BRM7 823 EFR3A "Uncharacterized protein 0.572 0.369 0.587 8e-110
ZFIN|ZDB-GENE-040426-1681 687 efr3a "EFR3 homolog A (S. cere 0.557 0.430 0.570 4.4e-109
WB|WBGene00016311 859 C32D5.3 [Caenorhabditis elegan 0.576 0.356 0.487 2.1e-86
UNIPROTKB|F1RRT6212 F1RRT6 "Uncharacterized protei 0.391 0.981 0.594 8.2e-67
FB|FBgn0086784 stmA "stambha A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 990 (353.6 bits), Expect = 7.7e-116, Sum P(2) = 7.7e-116
 Identities = 194/313 (61%), Positives = 246/313 (78%)

Query:     2 CMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASR 61
             C  C S  RPRYKRLVDNIFP++PE+GLVK+NMEKLTFY+LSSP+KLDRIGEYLYQ+A++
Sbjct:    30 CCGCCSALRPRYKRLVDNIFPVNPEDGLVKSNMEKLTFYSLSSPDKLDRIGEYLYQKATK 89

Query:    62 DISRRRNGYVVIAMEAMDQLLAACHSQT-LNLFVESFLKIVQKLLESLDPDLQILATNSF 120
             DI+R+R     IAMEAMD LL ACH+QT LNLFVESFL++VQKLLE  +P+L+I+ATNSF
Sbjct:    90 DINRKRYKLAEIAMEAMDLLLQACHAQTTLNLFVESFLRMVQKLLEDSNPNLKIMATNSF 149

Query:   121 VRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVIRKTVSDD 180
             V+FANI EDTPSYHRRYDFF+SKFS++CHS+ A +  R+ LRLAGI+G+QGVIRKTVSDD
Sbjct:   150 VKFANINEDTPSYHRRYDFFISKFSSMCHSDAASM--RDSLRLAGIKGLQGVIRKTVSDD 207

Query:   181 LVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQE----DPPALAE 236
             LVENIWE+ HMEKI+PSLLFNMQ   +       +     +G +  +++     PPALAE
Sbjct:   208 LVENIWEAEHMEKIVPSLLFNMQFCVNVMFV---KKNLLASGDLTPVEDATNVTPPALAE 264

Query:   237 TCLRELMSRASFNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNC 296
               LREL+ RASF H+++V++P+L H D H LW PN FA H  R++M S+Q QYS+ +V  
Sbjct:   265 EVLRELVGRASFGHIRSVLKPLLTHLDRHELWVPNTFAIHTFRIVMISIQPQYSYTVVET 324

Query:   297 ILAYL-NDHHSSP 308
             ++ +L N+  SSP
Sbjct:   325 LMQHLDNNFKSSP 337
GO:0005886 "plasma membrane" evidence=NAS
GO:0000910 "cytokinesis" evidence=IMP
GO:0007602 "phototransduction" evidence=IMP
GO:0007268 "synaptic transmission" evidence=IMP
GO:0016079 "synaptic vesicle exocytosis" evidence=IMP
GO:0048488 "synaptic vesicle endocytosis" evidence=IDA;IMP
GO:0045202 "synapse" evidence=IDA
GO:0030100 "regulation of endocytosis" evidence=IMP
MGI|MGI:2444851 Efr3b "EFR3 homolog B (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCW6 EFR3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q14156 EFR3A "Protein EFR3 homolog A" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1923990 Efr3a "EFR3 homolog A (S. cerevisiae)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305976 Efr3a "EFR3 homolog A (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BRM7 EFR3A "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1681 efr3a "EFR3 homolog A (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
WB|WBGene00016311 C32D5.3 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|F1RRT6 F1RRT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 531
KOG1877|consensus 819 100.0
KOG1877|consensus819 99.24
KOG2023|consensus 885 94.04
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 91.08
PF05804708 KAP: Kinesin-associated protein (KAP) 86.14
PF01602526 Adaptin_N: Adaptin N terminal region; InterPro: IP 85.54
KOG2171|consensus 1075 82.83
>KOG1877|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.4e-104  Score=877.49  Aligned_cols=467  Identities=44%  Similarity=0.725  Sum_probs=411.5

Q ss_pred             ccccCCCCChhhhhhhcccCcCCCCCCCccchhhHHHHHHhhCCchhhhhHHHHHHHHHHHHhhccCCceeeHHHHHHHH
Q psy6027           2 CMNCFSRFRPRYKRLVDNIFPLSPEEGLVKTNMEKLTFYALSSPEKLDRIGEYLYQRASRDISRRRNGYVVIAMEAMDQL   81 (531)
Q Consensus         2 ~C~cCp~~rPrykkLV~~~YP~~p~~~Pn~s~lskL~yYA~s~P~KL~KIg~yLekR~~~Dl~r~r~g~V~Vtl~i~~~L   81 (531)
                      ||+|||+|||||||||++|||++||+|||+++|+||||||+|||+||||||.||++|++||++|+|+|+|+|+|+||++|
T Consensus         4 ~c~cc~alR~RyKkLV~~iFPr~~e~gpn~s~m~kL~~YAasnp~KL~KI~~yL~~R~~kdl~~~r~~~v~Iamea~~kL   83 (819)
T KOG1877|consen    4 MCCCCPALRPRYKKLVDNIFPRSPEDGPNKSKMEKLTFYAASNPSKLPKIGTYLEERCYKDLRRERFGSVKIAMEAYDKL   83 (819)
T ss_pred             eeeecHHHHHHHHHHHHHhCCCCCCCCcccccHHHHHHHHhhChhhhhHHHHHHHHHHHHHHHhccCcchhhHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHH
Q psy6027          82 LAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKL  161 (531)
Q Consensus        82 l~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~  161 (531)
                      +.+||+| +|+||++||+||+.||++++++|+++||++|++|+++++|||+||++||+||++||+|||+. ++++.+..+
T Consensus        84 L~~C~eq-~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~-~~~~~~~~l  161 (819)
T KOG1877|consen   84 LQACKEQ-INLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER-GDDDMKDCL  161 (819)
T ss_pred             HHHHhhh-hHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc-cchhhhhhc
Confidence            9999998 99999999999999999999999999999999999999999999999999999999999998 677899999


Q ss_pred             HHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCC-----CCCCCCCCCCccccccccCCCCChHHHHH
Q psy6027         162 RLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGH-----YQSPADPEPEAEETGKMMNLQEDPPALAE  236 (531)
Q Consensus       162 R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~-----~~~~~~~~p~~~~~d~~~~~~e~p~~lA~  236 (531)
                      |.|||+||+||||+|++|.+.+++|+.+|+|+|||++++|++..+.     .+++..+.+.....++    ..+|++||+
T Consensus       162 r~agl~gLsa~v~~tv~d~l~~ti~e~~h~d~ivpsl~~~l~~~e~~~~~~S~s~~~~~~~~~a~~~----~~~p~vla~  237 (819)
T KOG1877|consen  162 RAAGLQGLSAVVWLTVSDHLAATIWEPQHMDKIVPSLLFELQSIENLGKRESDSRIRTFSLLAAGDK----TSDPKVLAE  237 (819)
T ss_pred             cHhhhhhHHHHHHHHHhhhhhhhhhhhhhhccchhhHHHhhcchhhcccccCcccccCccccccCCc----ccCcchhHH
Confidence            9999999999999999999999999999999999999999985542     2222111111111222    446999999


Q ss_pred             HHHHHHHhhhhhh-hHHHHHHHHhhhccCCCCCCC-chhHHHHHHHHHHHhhccCcchhHHHHHHHhhhcC--CCChHHH
Q psy6027         237 TCLRELMSRASFN-HVKNVIQPVLIHFDHHALWNP-NIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDHH--SSPSLIR  312 (531)
Q Consensus       237 ~CLr~l~~~a~~t-~vr~vl~~vl~~lD~~~~W~~-~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~~--~~~p~~r  312 (531)
                      +|+|+|+++|.++ ++|.+++|+|.|+|.|..|.| ||||+++|+++++++++|++|.|+++++.|||++.  .+.|.++
T Consensus       238 ~cl~~l~~~A~~g~~iR~~l~pl~~~~d~h~~w~p~n~fav~~~~~vi~~iq~q~s~~v~~~li~hLd~~~~~~~~~r~~  317 (819)
T KOG1877|consen  238 RCLRELLGRAKFGTNIRNALKPLLSHLDFHELWTPPNGFAVHVFKIVIYLIQRQYSYFVIQELINHLDNKKLVAKKPRLG  317 (819)
T ss_pred             HHHHHhhccccccchHHHHHHHHHhccccceeecCCCccchHHHHHHHHHHhhccchHHHHHHHHHHHhhcccccCcccc
Confidence            9999999999877 899999999999999999999 59999999999999999999999999999999984  5666777


Q ss_pred             HHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhhcCCCCCcchhhhHHHHHHHHH
Q psy6027         313 AKIADALSKIISIAASESIGPTVLEVLYTTLTLLCIELISDDTVVDFIRVIMRIQEIALTSTTLSDSQKYNLHALVAALF  392 (531)
Q Consensus       313 ~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~sL~~~e~vvdl~rl~lalQ~~a~~~~~l~~~~r~~~~a~~~~~l  392 (531)
                      ..||.+..  +.+++. ++|+++.++++++++|||+++       +.          . ...+.+.+.-           
T Consensus       318 ~~iv~~~~--~~i~~~-~v~ps~l~i~n~l~rhLR~si-------~~----------s-~~~~~~~~~~-----------  365 (819)
T KOG1877|consen  318 LSIVLVSI--ALIAAT-SVGPSVLIIFNDLLRHLRKSI-------SF----------S-DDGNIGLETD-----------  365 (819)
T ss_pred             chhHHHHH--HHHHhc-ccchHHHHHHHHHHHHHHhhc-------cc----------c-ccccCCchhh-----------
Confidence            77777655  334333 899999999999999999994       44          1 0122221110           


Q ss_pred             hhcccccCcchhhHHHHHHHHHhhhccccccchhHHHhhcCCCCccchhhhhheecccCCcccccCCCchhhHHHHHHHH
Q psy6027         393 TLVPLVSPITNIRDYVNKTIAARQEHKTYHLLPELREFAANLPDYQKTEILVFIISKVLSTTYRESNKSEHTLVQNMFMK  472 (531)
Q Consensus       393 ~l~s~~~~~p~~~q~~~~vie~R~~~~~~~ll~~~~~~~~~lp~~~k~~~~~f~~~k~~~~~~~~~~~~~~~~~q~~l~~  472 (531)
                                ..-.+++++++.       .++...+.|++++|||||.++|+|++++||..+  ..+..++.++|.|+++
T Consensus       366 ----------~~~~~~e~~~q~-------~li~~~~~~~~~~P~~q~~~vm~~~~~~v~~~s--k~~~~~~~liq~~~~~  426 (819)
T KOG1877|consen  366 ----------NGNYMIEAVVQE-------ALIQLTKKFANTLPDYQKMAVMLFIMSKVPDLS--KPSILGELLIQAMLLK  426 (819)
T ss_pred             ----------hhHHHHHHHHHH-------HHHHHHHhhcccCchHHHHHHHHhhcccccccC--CccccHHHHHHHHHHH
Confidence                      001445555543       689999999999999999999999999999655  2356699999999999


Q ss_pred             HHHHhhccceeeeecccCCcccHHHHHhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027         473 SLLMVSGKYTCLHISSAFPLAFLEPLLKILQSNDAEIRLLVNKEKARKKKKIE  525 (531)
Q Consensus       473 ~ll~v~~~~~~~~~~~~~~~~fl~~ll~~~~~~d~~~r~~v~~~~~~~~~~~~  525 (531)
                      ++|+|+++|++..++.+||++||++|+..++++|+++|+.+++|||+-+++-+
T Consensus       427 s~L~~s~s~~i~~~~l~~~sS~L~sll~~~l~r~~~~~~~t~eil~sl~d~~~  479 (819)
T KOG1877|consen  427 SLLSVSTSYQIVSVALAFPSSFLDSLLSTALMRDAELRLVTLEILHSLKDSHD  479 (819)
T ss_pred             HHhhhhhcceeeeehhhccHHHhhhhhhhhcCcccchhhHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999887643

>KOG1877|consensus Back     alignment and domain information
>KOG2023|consensus Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment Back     alignment and domain information
>KOG2171|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query531
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 4e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 71.0 bits (173), Expect = 5e-13
 Identities = 85/497 (17%), Positives = 147/497 (29%), Gaps = 126/497 (25%)

Query: 96  SFLKIVQKLLESLDPDLQILATNSFVR--FANIEED----TPSYHRRYDFFVSKFSALCH 149
            +  I+    ++   +          +   +  E D    +             F  L  
Sbjct: 17  QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLL- 72

Query: 150 SNYADVTKRNKLRLAGIRGIQGVIRKTVSDDLVEN---IWESTHMEKIIPSLLFNMQESG 206
                 +K+ +           +++K V + L  N   +      E+  PS++  M    
Sbjct: 73  ------SKQEE-----------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ 115

Query: 207 HYQSPADPEPEAEETGKMMNLQEDPPALA-ETCLRELMSRASFNHVKNVI---------- 255
             +   D +  A+      N+    P L     L EL         KNV+          
Sbjct: 116 RDRLYNDNQVFAK-----YNVSRLQPYLKLRQALLEL------RPAKNVLIDGVLGSGKT 164

Query: 256 ---------QPVLIHFDHHALW----NPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLN 302
                      V    D    W    N N     VL ML    Q     +  N      +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEML----QKLLYQIDPN--WTSRS 217

Query: 303 DHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVL--------YTTLTLLCIELI--S 352
           DH S+  L    I   L +++            L VL        +    L C  L+   
Sbjct: 218 DHSSNIKLRIHSIQAELRRLL----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273

Query: 353 DDTVVDFIRVIMRIQ-EIALTSTTLSDSQKYNLHALVA--ALFTL---VPLVSPI----- 401
              V DF+         +   S TL+  +  +L           L   V   +P      
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII 333

Query: 402 -TNIRDYVN-----KTIAARQEHKTY-----HLLP-ELREFAANLPDYQKTEIL---VFI 446
             +IRD +      K +   +           L P E R+       + +  +      I
Sbjct: 334 AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM------FDRLSVFPPSAHI 387

Query: 447 ISKVLSTTYRESNKSE-HTLVQNMFMKSLLMVSGKYTCLHISSAFPLAFLEPLLKILQSN 505
            + +LS  + +  KS+   +V  +   SL+    K + + I    P  +LE  LK+   N
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI----PSIYLE--LKVKLEN 441

Query: 506 DAEI-RLLVNKEKARKK 521
           +  + R +V+     K 
Sbjct: 442 EYALHRSIVDHYNIPKT 458
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 96.91
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 96.72
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 96.58
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.41
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 96.06
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 95.86
2bpt_A861 Importin beta-1 subunit; nuclear transport, nucleo 95.56
1qgr_A 876 Protein (importin beta subunit); transport recepto 95.17
1ibr_B462 P95, importin beta-1 subunit, nuclear factor; smal 95.1
2vgl_B591 AP-2 complex subunit beta-1; cytoplasmic vesicle, 94.62
1qgr_A876 Protein (importin beta subunit); transport recepto 93.39
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 92.78
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 92.26
1w63_A618 Adapter-related protein complex 1 gamma 1 subunit; 91.66
1u6g_C 1230 TIP120 protein, CAND1; cullin repeat, heat repeat, 91.39
1b3u_A588 Protein (protein phosphatase PP2A); scaffold prote 91.13
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 91.0
2qk1_A249 Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h 89.89
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 88.4
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 87.65
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 86.3
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 85.6
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 84.9
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 84.23
1wa5_C 960 Importin alpha RE-exporter; nuclear transport/comp 82.8
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 80.31
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
Probab=96.91  E-value=0.066  Score=59.99  Aligned_cols=237  Identities=11%  Similarity=0.063  Sum_probs=132.9

Q ss_pred             eHHHHHHHHHHHcccccccccHHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhh-hchHHHHHHHHhhhh--
Q psy6027          73 IAMEAMDQLLAACHSQTLNLFVESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYH-RRYDFFVSKFSALCH--  149 (531)
Q Consensus        73 Vtl~i~~~Ll~~C~~~~l~LFa~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~-~~y~~~V~~f~~la~--  149 (531)
                      -+++++..|...+.+. +.-+...++..+-.++...+++++..+++.+..++...... .+. ..+..+++.+.+...  
T Consensus       234 ~a~~~L~~l~~~~~~~-~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~-~~~~~~~~~l~p~ll~~l~~~  311 (852)
T 4fdd_A          234 NVCRALVMLLEVRMDR-LLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK-DVLVRHLPKLIPVLVNGMKYS  311 (852)
T ss_dssp             HHHHHHHHHHHHCHHH-HGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH-HHHTTTHHHHHHHHHHHTSCC
T ss_pred             HHHHHHHHHHHhCHHH-HHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHHHcCCc
Confidence            3566667777776663 44455666666666777778888999988888877542111 222 234456666655542  


Q ss_pred             --------hc-cCChh-----HHHHHHHHHHhhhhhhhhcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCC
Q psy6027         150 --------SN-YADVT-----KRNKLRLAGIRGIQGVIRKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPE  215 (531)
Q Consensus       150 --------~~-~~d~e-----~~~r~R~aGL~aL~~vV~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~  215 (531)
                              .. .+|++     ..-+.|.++.++|..++...+          ..-+..++|.+...+++.+         
T Consensus       312 e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~----------~~~~~~l~~~l~~~l~~~~---------  372 (852)
T 4fdd_A          312 DIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR----------DELLPHILPLLKELLFHHE---------  372 (852)
T ss_dssp             HHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG----------GGGHHHHHHHHHHHHTCSS---------
T ss_pred             HhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHhcCCC---------
Confidence                    11 11111     223468889999888776432          1123356676666663210         


Q ss_pred             CCccccccccCCCCChHHHHHHHHHHHHhhhh---hhhHHHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhcc----
Q psy6027         216 PEAEETGKMMNLQEDPPALAETCLRELMSRAS---FNHVKNVIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQ----  288 (531)
Q Consensus       216 p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~---~t~vr~vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q----  288 (531)
                                   -....-|-.+|..+.....   ...+..++..++..+.+.+ |.-..-|..++..+..+...+    
T Consensus       373 -------------~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~-~~Vr~~a~~~l~~l~~~~~~~~~~~  438 (852)
T 4fdd_A          373 -------------WVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPDT  438 (852)
T ss_dssp             -------------HHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHTHHHHHHSCTTT
T ss_pred             -------------HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhccchHHH
Confidence                         0123345555666644321   1346677777888775543 322455666666666666433    


Q ss_pred             CcchhHHHHHHHhhhcCCCChHHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHH
Q psy6027         289 YSHLIVNCILAYLNDHHSSPSLIRAKIADALSKIISIAASESIGPTVLEVLYTTLTLLCI  348 (531)
Q Consensus       289 ~~~~vls~Lv~HLd~~~~~~p~~r~~Iv~vls~lv~~a~~~s~g~sv~eal~~LLrhLr~  348 (531)
                      +-.-++..+++.|.   ..++.+|......+..++..... ...+..-+++..++..+..
T Consensus       439 ~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~~~~~-~l~~~l~~ll~~L~~~l~~  494 (852)
T 4fdd_A          439 YLKPLMTELLKRIL---DSNKRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSK  494 (852)
T ss_dssp             THHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHHHGG-GGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHHhhH-hhHhHHHHHHHHHHHHHHH
Confidence            22234455555543   34689999999988887765432 2344444555556555543
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Back     alignment and structure
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B Back     alignment and structure
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Back     alignment and structure
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Back     alignment and structure
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query531
d1b3ua_588 Constant regulatory domain of protein phosphatase 95.33
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 95.18
d2bpta1 861 Importin beta {Baker's yeast (Saccharomyces cerevi 91.87
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 91.79
d1b3ua_588 Constant regulatory domain of protein phosphatase 91.21
d1qgra_ 876 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 90.77
d1ibrb_458 Importin beta {Human (Homo sapiens) [TaxId: 9606]} 88.83
d1u6gc_ 1207 Cullin-associated NEDD8-dissociated protein 1 (Tip 87.49
d1qbkb_888 Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 82.05
d2vglb_ 579 Adaptin beta subunit N-terminal fragment {Human (H 80.06
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.33  E-value=0.14  Score=51.28  Aligned_cols=185  Identities=13%  Similarity=0.154  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHhcCCchhHHHhHHHHHHHHhccCCchhhhhchHHHHHHHHhhhhhccCChhHHHHHHHHHHhhhhhhh
Q psy6027          94 VESFLKIVQKLLESLDPDLQILATNSFVRFANIEEDTPSYHRRYDFFVSKFSALCHSNYADVTKRNKLRLAGIRGIQGVI  173 (531)
Q Consensus        94 a~s~L~Ii~~LL~s~~~~l~i~a~~tf~~F~~~~~D~~~y~~~y~~~V~~f~~la~~~~~d~e~~~r~R~aGL~aL~~vV  173 (531)
                      ...++.++..|.++.....+..++..+..+.... +. ..   ...+.+.+.+++...  +    ...|.+..+++..++
T Consensus       124 ~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~-~~-~~---~~~l~~~~~~l~~D~--~----~~VR~~a~~~l~~~~  192 (588)
T d1b3ua_         124 EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV-SS-AV---KAELRQYFRNLCSDD--T----PMVRRAAASKLGEFA  192 (588)
T ss_dssp             HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS-CH-HH---HHHHHHHHHHHHTCS--C----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh-hH-HH---HHHHHHHHHHHhccC--C----HHHHHHHHHHHHHHH
Confidence            3445555666666555555555555544443221 11 11   233566666666532  2    346777788888777


Q ss_pred             hcccchhhhhhcccccccchhHHHHHhhccCCCCCCCCCCCCCCccccccccCCCCChHHHHHHHHHHHHhhhhhhhHHH
Q psy6027         174 RKTVSDDLVENIWESTHMEKIIPSLLFNMQESGHYQSPADPEPEAEETGKMMNLQEDPPALAETCLRELMSRASFNHVKN  253 (531)
Q Consensus       174 ~k~~sd~L~~~i~e~~~~d~IVp~iL~Nl~~~~~~~~~~~~~p~~~~~d~~~~~~e~p~~lA~~CLr~l~~~a~~t~vr~  253 (531)
                      .....+.    +|     +.++|.+...+.+.                      .......|..|+-++...........
T Consensus       193 ~~~~~~~----~~-----~~l~~~l~~l~~d~----------------------~~~vr~~a~~~l~~i~~~~~~~~~~~  241 (588)
T d1b3ua_         193 KVLELDN----VK-----SEIIPMFSNLASDE----------------------QDSVRLLAVEACVNIAQLLPQEDLEA  241 (588)
T ss_dssp             HTSCHHH----HH-----HTHHHHHHHHHTCS----------------------CHHHHTTHHHHHHHHHHHSCHHHHHH
T ss_pred             HHhcHHH----HH-----HHHHHHHHHHhcCC----------------------chhhHHHHHHHHHHhhccCCHHHHHH
Confidence            6543211    11     24556544433211                      11122335666666654433333334


Q ss_pred             HHHHHhhhccCCCCCCCchhHHHHHHHHHHHhhccCcchhHHHHHHHhhhc-CCCChHHHHHHHHHHHHHH
Q psy6027         254 VIQPVLIHFDHHALWNPNIFATHVLRMLMYSVQSQYSHLIVNCILAYLNDH-HSSPSLIRAKIADALSKII  323 (531)
Q Consensus       254 vl~~vl~~lD~~~~W~~~~fA~~~f~~i~~s~q~Q~~~~vls~Lv~HLd~~-~~~~p~~r~~Iv~vls~lv  323 (531)
                      .+-|++..+-++..|.-...|..+|..+......+   .....++..+..- ...++.+|..-+..+..+.
T Consensus       242 ~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~  309 (588)
T d1b3ua_         242 LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE---ITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC  309 (588)
T ss_dssp             HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH---HHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhh---hhhhhhhHHHHHHHhccchHHHHHHHHHHHHHH
Confidence            44455554445556655555666666665544221   1222233333222 2345777777666665443
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure