Psyllid ID: psy6037

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MSNSVNAINEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLGPAGWNGHTNGNAENIEVTN
cccccccccccccEEEEccccHHHHHHHHHHHHHHccEEEEcEEcccccccccccccccHHHHHHHHHHHHccccEEEEEEEEEccccccccccccEEEEEEEEccccccccHHHHHHHHHccccHHHHHHHcccHHHHHHHHHHcccccccccEEEEcccccHHHHHHHHHHccccccccHHHHHHHHHHHcccEEEEHHHHHHcccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccccccccccccccc
ccccccccccccEHHHHHHHcHHHHHHHHHHHHHHccEEEEccccccEEEEEcccccccccccEEEEEHHHHHHHHHHHcEEEEcccccccccccEEEEEEEEEcccHHcccHHHHHHHHHccccHHHHHHccccHHHHHHHHHHccEEEcccEEEEEEcccHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccHHHHHHHHccccEcccccccccHHHHHHHHHHHHHHHHHcccccHHHcccEEEEccccccccccccccccccccc
msnsvnainekygirEVWARNVQEEFVHIRSLIntynyigidtefpgvvakplgdfrstseyQYHFLKINVDLLKIIQIGLtffdsksctppgpfttwqfnfkfdlqedmyaQDSIDLLQNSgiqfqrhkeegiepadFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMgtrslpseeAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQldlsrigpqhqagsdslltGRVFFKMRELFFEdaidddkycghiyglgpagwnghtngnaenievtn
msnsvnainekygirevWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLsrigpqhqagsdsllTGRVFFKMRELFFEDAIDDDKYCGHIYGLGPAGWNGHTNGNAENIEVTN
MSNSVNAINEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLGPAGWNGHTNGNAENIEVTN
*******INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRI********DSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLGPAGWNGH************
***************EVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLGP******************
MSNSVNAINEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLGPAGWNGHTNGNAENIEVTN
*********EKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLGP******************
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MSNSVNAINEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDAIDDDKYCGHIYGLGPAGWNGHTNGNAENIEVTN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q60809285 CCR4-NOT transcription co yes N/A 0.944 0.947 0.681 1e-104
Q3ZC01285 CCR4-NOT transcription co yes N/A 0.944 0.947 0.681 1e-104
Q9UIV1285 CCR4-NOT transcription co yes N/A 0.923 0.926 0.692 1e-104
Q5ZJV9285 CCR4-NOT transcription co yes N/A 0.923 0.926 0.692 1e-104
Q08BM8286 CCR4-NOT transcription co yes N/A 0.923 0.923 0.689 1e-104
A4II96285 CCR4-NOT transcription co no N/A 0.923 0.926 0.677 1e-102
Q3KQ85285 CCR4-NOT transcription co N/A N/A 0.923 0.926 0.677 1e-102
Q9UFF9292 CCR4-NOT transcription co no N/A 0.881 0.863 0.704 1e-102
Q9D8X5292 CCR4-NOT transcription co no N/A 0.881 0.863 0.704 1e-102
O74856335 Poly(A) ribonuclease pop2 yes N/A 0.926 0.791 0.523 2e-76
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 OS=Mus musculus GN=Cnot7 PE=1 SV=1 Back     alignment and function desciption
 Score =  379 bits (974), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 186/273 (68%), Positives = 219/273 (80%), Gaps = 3/273 (1%)

Query: 14  IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
           I EVWA N+ EE   IR +I  YNY+ +DTEFPGVVA+P+G+FRS ++YQY  L+ NVDL
Sbjct: 12  ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71

Query: 74  LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
           LKIIQ+GLTF + +   PPG  +TWQFNFKF+L EDMYAQDSI+LL  SGIQF++H+EEG
Sbjct: 72  LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEG 130

Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
           IE   FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L  + +LP EE +FFE+ RLFF
Sbjct: 131 IETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFEILRLFF 189

Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
             IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG  FFKMRE+FFED 
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249

Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNAENIEVT 285
           IDD KYCGH+YGLG  + +  +  GNA   E +
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEAS 282
Ubiquitous transcription factor required for a diverse set of processes. It is a component of the CCR4 complex involved in the control of gene expression.
Mus musculus (taxid: 10090)
>sp|Q3ZC01|CNOT7_BOVIN CCR4-NOT transcription complex subunit 7 OS=Bos taurus GN=CNOT7 PE=2 SV=1 Back     alignment and function description
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 OS=Homo sapiens GN=CNOT7 PE=1 SV=3 Back     alignment and function description
>sp|Q5ZJV9|CNOT7_CHICK CCR4-NOT transcription complex subunit 7 OS=Gallus gallus GN=CNOT7 PE=2 SV=1 Back     alignment and function description
>sp|Q08BM8|CNOT7_DANRE CCR4-NOT transcription complex subunit 7 OS=Danio rerio GN=cnot7 PE=2 SV=1 Back     alignment and function description
>sp|A4II96|CNOT7_XENTR CCR4-NOT transcription complex subunit 7 OS=Xenopus tropicalis GN=cnot7 PE=2 SV=1 Back     alignment and function description
>sp|Q3KQ85|CNOT7_XENLA CCR4-NOT transcription complex subunit 7 OS=Xenopus laevis GN=cnot7 PE=2 SV=1 Back     alignment and function description
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 OS=Homo sapiens GN=CNOT8 PE=1 SV=1 Back     alignment and function description
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 OS=Mus musculus GN=Cnot8 PE=2 SV=1 Back     alignment and function description
>sp|O74856|CAF1_SCHPO Poly(A) ribonuclease pop2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=caf1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
350417214344 PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT 0.909 0.755 0.720 1e-112
328788929347 PREDICTED: CCR4-NOT transcription comple 0.909 0.749 0.720 1e-112
307174210283 CCR4-NOT transcription complex subunit 7 0.965 0.975 0.676 1e-111
380019966327 PREDICTED: CCR4-NOT transcription comple 0.909 0.795 0.720 1e-111
340715045302 PREDICTED: CCR4-NOT transcription comple 0.909 0.860 0.720 1e-111
332019408283 CCR4-NOT transcription complex subunit 7 0.965 0.975 0.676 1e-111
321466578281 hypothetical protein DAPPUDRAFT_54175 [D 0.947 0.964 0.696 1e-111
346470377331 hypothetical protein [Amblyomma maculatu 0.975 0.842 0.683 1e-111
383855806351 PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT 0.909 0.740 0.716 1e-110
345482783330 PREDICTED: CCR4-NOT transcription comple 0.905 0.784 0.720 1e-110
>gi|350417214|ref|XP_003491312.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 7-like [Bombus impatiens] Back     alignment and taxonomy information
 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/261 (72%), Positives = 226/261 (86%), Gaps = 1/261 (0%)

Query: 9   NEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLK 68
           NE+ GIR+VW  N++EEF  IR ++  Y YI +DTEFPGVVA+P+G+FR++++YQY  L+
Sbjct: 23  NEECGIRDVWGHNLEEEFRTIRQVVQQYQYIAMDTEFPGVVARPIGEFRTSADYQYQLLR 82

Query: 69  INVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQR 128
            NVDLL+IIQ+GLTF D    TP G +TTWQFNFKF+LQEDMYAQDSID+LQNSGIQF++
Sbjct: 83  CNVDLLRIIQLGLTFLDESGNTPGGSYTTWQFNFKFNLQEDMYAQDSIDMLQNSGIQFKK 142

Query: 129 HKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188
           H+EEGI+P DFAELL TSG+VL D +KWLSFHSGYDFGYLLKLL   ++LP EE+EFFEL
Sbjct: 143 HEEEGIDPLDFAELLMTSGIVLVDDIKWLSFHSGYDFGYLLKLLT-DQNLPQEESEFFEL 201

Query: 189 QRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248
            R++F +IYDVKYLMKSCKNLKGGLQEVAEQL++ R+GPQHQAGSDSLLTG VFFKMRE+
Sbjct: 202 LRIYFPTIYDVKYLMKSCKNLKGGLQEVAEQLEIQRVGPQHQAGSDSLLTGMVFFKMREM 261

Query: 249 FFEDAIDDDKYCGHIYGLGPA 269
           FFED IDD KYCGH+YGLG +
Sbjct: 262 FFEDNIDDAKYCGHLYGLGTS 282

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328788929|ref|XP_623444.2| PREDICTED: CCR4-NOT transcription complex subunit 7-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|307174210|gb|EFN64855.1| CCR4-NOT transcription complex subunit 7 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|380019966|ref|XP_003693870.1| PREDICTED: CCR4-NOT transcription complex subunit 7-like [Apis florea] Back     alignment and taxonomy information
>gi|340715045|ref|XP_003396031.1| PREDICTED: CCR4-NOT transcription complex subunit 7-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|332019408|gb|EGI59892.1| CCR4-NOT transcription complex subunit 7 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|321466578|gb|EFX77573.1| hypothetical protein DAPPUDRAFT_54175 [Daphnia pulex] Back     alignment and taxonomy information
>gi|346470377|gb|AEO35033.1| hypothetical protein [Amblyomma maculatum] Back     alignment and taxonomy information
>gi|383855806|ref|XP_003703401.1| PREDICTED: LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 7-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345482783|ref|XP_003424663.1| PREDICTED: CCR4-NOT transcription complex subunit 7-like isoform 4 [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
UNIPROTKB|Q3ZC01285 CNOT7 "CCR4-NOT transcription 0.965 0.968 0.666 4.1e-97
MGI|MGI:1298230285 Cnot7 "CCR4-NOT transcription 0.965 0.968 0.666 4.1e-97
UNIPROTKB|Q5ZJV9285 CNOT7 "CCR4-NOT transcription 0.944 0.947 0.677 5.2e-97
UNIPROTKB|E2RMU2285 CNOT7 "Uncharacterized protein 0.944 0.947 0.677 5.2e-97
UNIPROTKB|Q9UIV1285 CNOT7 "CCR4-NOT transcription 0.944 0.947 0.677 5.2e-97
ZFIN|ZDB-GENE-061013-29286 cnot7 "CCR4-NOT transcription 0.944 0.944 0.673 8.4e-97
ZFIN|ZDB-GENE-040426-2845285 cnot8 "CCR4-NOT transcription 0.944 0.947 0.676 1.4e-96
UNIPROTKB|E1BJH0292 CNOT8 "Uncharacterized protein 0.881 0.863 0.704 8.7e-95
UNIPROTKB|E2RID4292 CNOT8 "Uncharacterized protein 0.881 0.863 0.704 8.7e-95
UNIPROTKB|Q9UFF9292 CNOT8 "CCR4-NOT transcription 0.881 0.863 0.704 8.7e-95
UNIPROTKB|Q3ZC01 CNOT7 "CCR4-NOT transcription complex subunit 7" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 186/279 (66%), Positives = 221/279 (79%)

Query:     8 INEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFL 67
             ++    I EVWA N+ EE   IR +I  YNY+ +DTEFPGVVA+P+G+FRS ++YQY  L
Sbjct:     6 VDHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLL 65

Query:    68 KINVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQ 127
             + NVDLLKIIQ+GLTF + +   PPG  +TWQFNFKF+L EDMYAQDSI+LL  SGIQF+
Sbjct:    66 RCNVDLLKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFK 124

Query:   128 RHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFE 187
             +H+EEGIE   FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L  + +LP EE +FFE
Sbjct:   125 KHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFE 183

Query:   188 LQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRE 247
             + RLFF  IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG  FFKMRE
Sbjct:   184 ILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMRE 243

Query:   248 LFFEDAIDDDKYCGHIYGLGP-AGWNGHTNGNAENIEVT 285
             +FFED IDD KYCGH+YGLG  + +  +  GNA   E +
Sbjct:   244 MFFEDHIDDAKYCGHLYGLGSGSSYVQNGTGNAYEEEAS 282
GO:0000932 "cytoplasmic mRNA processing body" evidence=ISS
GO:0005634 "nucleus" evidence=IEA
GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA
GO:0033962 "cytoplasmic mRNA processing body assembly" evidence=IEA
GO:0030014 "CCR4-NOT complex" evidence=IEA
GO:0004535 "poly(A)-specific ribonuclease activity" evidence=IEA
GO:0000290 "deadenylation-dependent decapping of nuclear-transcribed mRNA" evidence=IEA
GO:0000289 "nuclear-transcribed mRNA poly(A) tail shortening" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
MGI|MGI:1298230 Cnot7 "CCR4-NOT transcription complex, subunit 7" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZJV9 CNOT7 "CCR4-NOT transcription complex subunit 7" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RMU2 CNOT7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UIV1 CNOT7 "CCR4-NOT transcription complex subunit 7" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-29 cnot7 "CCR4-NOT transcription complex, subunit 7" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2845 cnot8 "CCR4-NOT transcription complex, subunit 8" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E1BJH0 CNOT8 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RID4 CNOT8 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UFF9 CNOT8 "CCR4-NOT transcription complex subunit 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q60809CNOT7_MOUSENo assigned EC number0.68130.94400.9473yesN/A
Q3KQ85CNOT7_XENLANo assigned EC number0.67790.92300.9263N/AN/A
Q17345CNOT7_CAEELNo assigned EC number0.44920.93000.8580yesN/A
Q5ZJV9CNOT7_CHICKNo assigned EC number0.69280.92300.9263yesN/A
Q3ZC01CNOT7_BOVINNo assigned EC number0.68130.94400.9473yesN/A
Q08BM8CNOT7_DANRENo assigned EC number0.68910.92300.9230yesN/A
O74856CAF1_SCHPO3, ., 1, ., 1, 3, ., 40.52380.92650.7910yesN/A
Q9D8X5CNOT8_MOUSENo assigned EC number0.70470.88110.8630noN/A
Q9UFF9CNOT8_HUMANNo assigned EC number0.70470.88110.8630noN/A
A4II96CNOT7_XENTRNo assigned EC number0.67790.92300.9263noN/A
Q9SKZ2CAF1G_ARATH3, ., 1, ., 1, 3, ., 40.50570.87760.9127yesN/A
Q9UIV1CNOT7_HUMANNo assigned EC number0.69280.92300.9263yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
pfam04857235 pfam04857, CAF1, CAF1 family ribonuclease 1e-103
COG5228299 COG5228, POP2, mRNA deadenylase subunit [RNA proce 1e-102
>gnl|CDD|147159 pfam04857, CAF1, CAF1 family ribonuclease Back     alignment and domain information 
 Score =  300 bits (771), Expect = e-103
 Identities = 131/237 (55%), Positives = 158/237 (66%), Gaps = 9/237 (3%)

Query: 15  REVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLL 74
           REVW  N  EEF  IR  I++Y++I IDTEFPGVVA+P+G FRSTS+Y+Y  L+ NVD L
Sbjct: 1   REVWRSNFHEEFKEIRQAIDSYDFIAIDTEFPGVVARPIGSFRSTSDYRYQALRKNVDRL 60

Query: 75  KIIQIGLTFFDSKSCTPPGPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
           KIIQ+GLT FD K   P   + TWQFNF  F+L+ED YA  SI+ L   G  F +H+ EG
Sbjct: 61  KIIQLGLTLFDEKGNLPDSYY-TWQFNFSLFNLEEDFYAPSSIEFLAKQGFDFNKHRREG 119

Query: 134 IEPADFAELLTTSGVVLND-KVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLF 192
           I    FAELL +SG+ LN   V W++FH  YDFGYLLKLL G   LP    +F EL R  
Sbjct: 120 IPYLRFAELLGSSGLFLNISSVTWVTFHGLYDFGYLLKLLTG-GPLPETLDDFLELLREL 178

Query: 193 FKSIYDVKYLMKSCKNLKG----GLQEVAEQLDLSR-IGPQHQAGSDSLLTGRVFFK 244
           F  +YD KYL K C  L G    GLQE+A+ L ++R +G  HQAGSDSLLT  VFFK
Sbjct: 179 FPRVYDTKYLAKFCFELDGGSNGGLQELADLLGVNRRVGRLHQAGSDSLLTALVFFK 235

The major pathways of mRNA turnover in eukaryotes initiate with shortening of the polyA tail. CAF1 encodes a critical component of the major cytoplasmic deadenylase in yeast. Both Caf1p is required for normal mRNA deadenylation in vivo and localises to the cytoplasm. Caf1p copurifies with a Ccr4p-dependent polyA-specific exonuclease activity. Some members of this family include and inserted RNA binding domain pfam01424. This family of proteins is related to other exonucleases pfam00929 (Bateman A pers. obs.). The crystal structure of Saccharomyces cerevisiae Pop2 has been resolved at 2.3 Angstrom#resolution. Length = 235
>gnl|CDD|227553 COG5228, POP2, mRNA deadenylase subunit [RNA processing and modification] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
KOG0304|consensus239 100.0
COG5228299 POP2 mRNA deadenylase subunit [RNA processing and 100.0
PF04857262 CAF1: CAF1 family ribonuclease; InterPro: IPR00694 100.0
PRK07942232 DNA polymerase III subunit epsilon; Provisional 98.95
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 98.92
KOG1990|consensus 564 98.91
cd06133176 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o 98.65
PRK09145202 DNA polymerase III subunit epsilon; Validated 98.64
PRK05168211 ribonuclease T; Provisional 98.59
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 98.55
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 98.5
PRK07748207 sporulation inhibitor KapD; Provisional 98.44
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 98.41
PRK05711240 DNA polymerase III subunit epsilon; Provisional 98.39
PRK06807 313 DNA polymerase III subunit epsilon; Validated 98.35
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 98.31
PRK07740244 hypothetical protein; Provisional 98.31
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 98.25
PRK06063313 DNA polymerase III subunit epsilon; Provisional 98.2
PRK06310250 DNA polymerase III subunit epsilon; Validated 98.18
PRK09146239 DNA polymerase III subunit epsilon; Validated 98.18
PRK06195 309 DNA polymerase III subunit epsilon; Validated 98.16
PRK07247195 DNA polymerase III subunit epsilon; Validated 98.12
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 98.11
PRK08074 928 bifunctional ATP-dependent DNA helicase/DNA polyme 98.09
PRK08517257 DNA polymerase III subunit epsilon; Provisional 98.04
PRK06722281 exonuclease; Provisional 98.03
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 97.98
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 97.98
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 97.96
cd06136177 TREX1_2 DEDDh 3'-5' exonuclease domain of three pr 97.96
PRK07883 557 hypothetical protein; Validated 97.93
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 97.93
cd06138183 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o 97.88
PF00929164 RNase_T: Exonuclease; InterPro: IPR013520 This ent 97.88
PTZ00315 582 2'-phosphotransferase; Provisional 97.78
PRK07983219 exodeoxyribonuclease X; Provisional 97.65
PRK11779 476 sbcB exonuclease I; Provisional 97.64
PRK05601377 DNA polymerase III subunit epsilon; Validated 97.63
PRK00448 1437 polC DNA polymerase III PolC; Validated 97.52
COG0847243 DnaQ DNA polymerase III, epsilon subunit and relat 97.51
PRK09182294 DNA polymerase III subunit epsilon; Validated 97.45
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 97.42
PRK06309232 DNA polymerase III subunit epsilon; Validated 97.39
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 97.07
PRK05359181 oligoribonuclease; Provisional 96.96
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 96.78
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 96.45
COG0349 361 Rnd Ribonuclease D [Translation, ribosomal structu 96.1
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 95.66
PRK05755 880 DNA polymerase I; Provisional 95.11
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 94.92
PRK10829 373 ribonuclease D; Provisional 94.08
cd06135173 Orn DEDDh 3'-5' exonuclease domain of oligoribonuc 93.39
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 93.16
TIGR01388 367 rnd ribonuclease D. This model describes ribonucle 92.61
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 88.77
PF10108209 DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate 85.02
PF13482164 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 82.28
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 81.07
>KOG0304|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.8e-93  Score=629.58  Aligned_cols=236  Identities=61%  Similarity=1.065  Sum_probs=230.0

Q ss_pred             cEEeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCC
Q psy6037          13 GIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPP   92 (286)
Q Consensus        13 ~i~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~   92 (286)
                      .|||||++|+++||+.||++|++||||||||||||++++|++.|+++.+++|+.||+|||.+++||+|||++|++|+.|.
T Consensus         1 ~ireVW~~Nl~~Em~~Ir~~v~~y~~IamDTEFPGvv~rp~~~f~s~~d~~Y~~lk~NVd~lklIQlGlTlsd~~Gn~p~   80 (239)
T KOG0304|consen    1 FIREVWRSNLEEEMALIRECVKDYPYIAMDTEFPGVVARPIGTFRSSDDYHYQTLKCNVDNLKLIQLGLTLSDEKGNLPD   80 (239)
T ss_pred             ChhHHHHHhHHHHHHHHHHHHHhCCeeEecCcCCceeeecCccccCChHHHHHHHHhchhhhhhhheeeeeeccCCCCCC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999995


Q ss_pred             CCcceEEEEEE-ecCCCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHHHH
Q psy6037          93 GPFTTWQFNFK-FDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKL  171 (286)
Q Consensus        93 ~~~~~wqFNF~-F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~K~  171 (286)
                      ...++|||||. |+..+|+++++||+||+++||||.|+++.||+..+|+|+|++||++++++|+||||||+||||||+|+
T Consensus        81 ~g~~tWqfNF~dF~~~~D~~a~~SIElLr~~Gidf~K~~e~GI~~~~F~ellm~sg~v~~~~V~WvTFhs~YDfgYLlK~  160 (239)
T KOG0304|consen   81 CGTDTWQFNFSDFNLEKDMYAQDSIELLRRSGIDFEKHREEGIDIEEFAELLMTSGLVLDENVTWVTFHSGYDFGYLLKI  160 (239)
T ss_pred             CCCceeEEecccCCchhhccchhhHHHHHHcCcCHHHHHHcCCCHHHHHHHHHHhhhhccCceEEEEeeccchHHHHHHH
Confidence            54789999999 99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhcc--ccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHh
Q psy6037         172 LMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKN--LKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELF  249 (286)
Q Consensus       172 lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~--l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~  249 (286)
                      ||++ +||++.++|.+.++++||.+||+|||++.|.+  +++||++||+.|+++|+|++||||||||||+++|+||++.|
T Consensus       161 Lt~~-~LP~~~~eF~~~v~~~fp~vYDiK~l~~~c~~~~l~~GL~~lA~~L~~~RvG~~HqAGSDSlLT~~~F~kl~~~f  239 (239)
T KOG0304|consen  161 LTGK-PLPETEEEFFEIVRQLFPFVYDVKYLMKFCEGLSLKGGLQRLADLLGLKRVGIAHQAGSDSLLTARVFFKLKELF  239 (239)
T ss_pred             HcCC-CCcchHHHHHHHHHHHcchhhhHHHHHHhhhhhhhhcCHHHHHHHhCCCeeecccccCcHHHHHHHHHHHHHhcC
Confidence            9998 99999999999999999999999999999965  89999999999999999999999999999999999999864

>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification] Back     alignment and domain information
>PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>KOG1990|consensus Back     alignment and domain information
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins Back     alignment and domain information
>PRK09145 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>PRK07748 sporulation inhibitor KapD; Provisional Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK09146 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK07247 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>PRK06722 exonuclease; Provisional Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins Back     alignment and domain information
>PRK07883 hypothetical protein; Validated Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins Back     alignment and domain information
>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PTZ00315 2'-phosphotransferase; Provisional Back     alignment and domain information
>PRK07983 exodeoxyribonuclease X; Provisional Back     alignment and domain information
>PRK11779 sbcB exonuclease I; Provisional Back     alignment and domain information
>PRK05601 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK00448 polC DNA polymerase III PolC; Validated Back     alignment and domain information
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK09182 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>PRK05359 oligoribonuclease; Provisional Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins Back     alignment and domain information
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
4gmj_B285 Structure Of Human Not1 Mif4g Domain Co-Crystallize 1e-105
2d5r_A252 Crystal Structure Of A Tob-Hcaf1 Complex Length = 2 1e-104
2p51_A333 Crystal Structure Of The S. Pombe Pop2p Deadenylati 2e-77
4b8a_B286 Structure Of Yeast Not1 Mif4g Domain Co-Crystallize 9e-45
1uoc_A289 X-Ray Structure Of The Rnase Domain Of The Yeast Po 1e-44
4b8c_A288 Nuclease Module Of The Yeast Ccr4-Not Complex Lengt 1e-44
>pdb|4GMJ|B Chain B, Structure Of Human Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 285 Back     alignment and structure 
Iteration: 1

 Score =  379 bits (973), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/267 (69%), Positives = 217/267 (81%), Gaps = 3/267 (1%)
Query: 14  IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
           I EVWA N+ EE   IR +I  YNY+ +DTEFPGVVA+P+G+FRS ++YQY  L+ NVDL
Sbjct: 12  ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 71
Query: 74  LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
           LKIIQ+GLTF + +   PPG  +TWQFNFKF+L EDMYAQDSI+LL  SGIQF++H+EEG
Sbjct: 72  LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEG 130
Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
           IE   FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L  + +LP EE +FFE+ RLFF
Sbjct: 131 IETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTNS-NLPEEELDFFEILRLFF 189
Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
             IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG  FFKMRE+FFED 
Sbjct: 190 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 249
Query: 254 IDDDKYCGHIYGLGP-AGWNGHTNGNA 279
           IDD KYCGH+YGLG  + +  +  GNA
Sbjct: 250 IDDAKYCGHLYGLGSGSSYVQNGTGNA 276
>pdb|2D5R|A Chain A, Crystal Structure Of A Tob-Hcaf1 Complex Length = 252 Back     alignment and structure
>pdb|2P51|A Chain A, Crystal Structure Of The S. Pombe Pop2p Deadenylation Subunit Length = 333 Back     alignment and structure
>pdb|4B8A|B Chain B, Structure Of Yeast Not1 Mif4g Domain Co-Crystallized With Caf1 Length = 286 Back     alignment and structure
>pdb|1UOC|A Chain A, X-Ray Structure Of The Rnase Domain Of The Yeast Pop2 Protein Length = 289 Back     alignment and structure
>pdb|4B8C|A Chain A, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 288 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2p51_A333 SPCC18.06C protein; DEDD nuclease fold, hydrolase, 1e-122
1uoc_A289 POP2; hydrolase, DEDD nuclease, mRNA degradation, 1e-121
2d5r_A252 CCR4-NOT transcription complex subunit 7; poly(A) 1e-118
2a1r_A 430 Poly(A)-specific ribonuclease PARN; DEDD, nuclease 4e-26
2a1r_A430 Poly(A)-specific ribonuclease PARN; DEDD, nuclease 2e-17
3d45_A 507 Poly(A)-specific ribonuclease PARN; CAP analogue, 1e-25
3d45_A507 Poly(A)-specific ribonuclease PARN; CAP analogue, 9e-12
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 9e-05
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 1e-04
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 4e-04
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A Length = 333 Back     alignment and structure
 Score =  352 bits (904), Expect = e-122
 Identities = 140/279 (50%), Positives = 191/279 (68%), Gaps = 4/279 (1%)

Query: 9   NEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLK 68
           ++   IR+VW+ N+Q+E   I SLI  Y  + +DTEFPGVVA+PLG F+S+ +Y Y  L+
Sbjct: 18  SQISPIRDVWSTNLQQEMNLIMSLIERYPVVSMDTEFPGVVARPLGVFKSSDDYHYQTLR 77

Query: 69  INVDLLKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQR 128
            NVD LKIIQIGL   D +   P    T WQFNF F+LQ+DMYA +SI+LL  SGI F++
Sbjct: 78  ANVDSLKIIQIGLALSDEEGNAPVEACT-WQFNFTFNLQDDMYAPESIELLTKSGIDFKK 136

Query: 129 HKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFEL 188
           H+E GIEPADFAELL  SG+VL ++V W++FHSGYDF YLLK +     LP+E  EF+++
Sbjct: 137 HQEVGIEPADFAELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQ-IPLPAEYEEFYKI 195

Query: 189 QRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL 248
             ++F   YD+KY+MKS  N   GLQ++A+ L + RIGPQHQAGSD+LLT R+FF++R  
Sbjct: 196 LCIYFPKNYDIKYIMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSR 255

Query: 249 FFEDAIDDDKYCGHIYGLG-PAGWNGHTNGNAENIEVTN 286
           +F+ +I D +    +YGLG       H N +   I+  +
Sbjct: 256 YFDGSI-DSRMLNQLYGLGSTGSVLWHNNSSTPQIQFRD 293
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9 Length = 289 Back     alignment and structure
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9 Length = 252 Back     alignment and structure
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Length = 430 Back     alignment and structure
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Length = 430 Back     alignment and structure
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus} Length = 507 Back     alignment and structure
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus} Length = 507 Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Length = 349 Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299 Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Length = 204 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
4gmj_B285 CCR4-NOT transcription complex subunit 7; mRNA dec 100.0
2p51_A333 SPCC18.06C protein; DEDD nuclease fold, hydrolase, 100.0
2d5r_A252 CCR4-NOT transcription complex subunit 7; poly(A) 100.0
1uoc_A289 POP2; hydrolase, DEDD nuclease, mRNA degradation, 100.0
3d45_A507 Poly(A)-specific ribonuclease PARN; CAP analogue, 100.0
2a1r_A430 Poly(A)-specific ribonuclease PARN; DEDD, nuclease 100.0
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 98.85
1w0h_A204 3'-5' exonuclease ERI1; nuclease domain, hydrolase 98.77
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 98.7
2xri_A224 ERI1 exoribonuclease 3; hydrolase, metal binding; 98.6
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 98.59
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 98.56
3cg7_A308 CRN-4, cell death-related nuclease 4; hydrolase, a 98.48
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 98.46
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 98.45
1zbu_A349 ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; 98.37
2qxf_A 482 Exodeoxyribonuclease I; alpha-beta domain, DNAQ su 98.27
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 98.26
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 98.13
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 98.13
2igi_A180 Oligoribonuclease; RNAse, exoribonuclease, exonucl 97.96
2gbz_A194 Oligoribonuclease; ORN, deddh, structural genomics 97.48
3tr8_A186 Oligoribonuclease; transcription, hydrolase; 2.50A 97.11
2kfn_A 605 Klenow fragment of DNA polymerase I; complex (poly 95.98
>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=2.7e-95  Score=675.40  Aligned_cols=261  Identities=70%  Similarity=1.194  Sum_probs=252.0

Q ss_pred             cCcccEEeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCC
Q psy6037           9 NEKYGIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKS   88 (286)
Q Consensus         9 ~~~~~i~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g   88 (286)
                      ..+.+|||||++||++||+.|+++|++|+||||||||||++++|.+.+++++|+||+++|+|||.++|||+|||+|+++|
T Consensus         7 ~~~~~IreVw~~Nl~ee~~~I~~~i~~~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQlGLt~f~~~g   86 (285)
T 4gmj_B            7 DHSQRICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQG   86 (285)
T ss_dssp             ---CCEEEECHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEEEEEEECTTS
T ss_pred             CCCCeEEEechhHHHHHHHHHHHHHhcCCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeEEEEeeccCC
Confidence            44678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceEEEEEEecCCCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHH
Q psy6037          89 CTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYL  168 (286)
Q Consensus        89 ~~p~~~~~~wqFNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL  168 (286)
                      +.|.. +++|||||+|++.+|+|+++||+||+++||||+|++++|||+.+|+|+|++||++++++++||+|||+||||||
T Consensus        87 ~~p~~-~~~wqFNF~f~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~sglvl~~~v~WvtfH~~yDf~yL  165 (285)
T 4gmj_B           87 EYPPG-TSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYL  165 (285)
T ss_dssp             CCCSS-CCEEEEEBCCCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTSSSSSCTTCEEEESSCHHHHHHH
T ss_pred             CcCCC-eeEEEEEEEeccccccccHHHHHHHHHcCCCHHHHHHcCCCHHHHHHHHHHhHHHhcCCCceEEecchhhHHHH
Confidence            99887 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHH
Q psy6037         169 LKLLMGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMREL  248 (286)
Q Consensus       169 ~K~lt~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~  248 (286)
                      +|+|||. +||+++++|+++++.+||++||+|||++.|.++++||++||+.|+|+|+|++||||||||||++||+||+++
T Consensus       166 ~k~lt~~-~LP~~~~eF~~~l~~~FP~vYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~kl~~~  244 (285)
T 4gmj_B          166 IKILTNS-NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREM  244 (285)
T ss_dssp             HHHHHTS-CCCSSHHHHHHHHHHHCSCEEEHHHHGGGSTTCCSCHHHHHHHTTCCCCSCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCC-CCCCCHHHHHHHHHHHCchhhhHHHHHHhccccCChHHHHHHhCCCCCCCCCCcchhHHHHHHHHHHHHHHH
Confidence            9999998 999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCcccccceEEecCCCCC
Q psy6037         249 FFEDAIDDDKYCGHIYGLGPAGW  271 (286)
Q Consensus       249 ~~~~~~~~~~~~g~i~Gl~~~~~  271 (286)
                      ||+++++.++|+|+|||||+...
T Consensus       245 ~f~~~~~~~~~~g~l~Glg~~~~  267 (285)
T 4gmj_B          245 FFEDHIDDAKYCGHLYGLGSGSS  267 (285)
T ss_dssp             HHTTCCCHHHHTTCCTTSSTTC-
T ss_pred             HhcCCcchHHhCCEEeccCCCCC
Confidence            99999888899999999997543
>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A Back     alignment and structure
>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9 Back     alignment and structure
>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9 Back     alignment and structure
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus} Back     alignment and structure
>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Back     alignment and structure
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d2d5ra1252 c.55.3.9 (A:11-262) CCR4-NOT transcription complex 1e-123
d1uoca_286 c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast ( 1e-120
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 252 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: CAF1-like ribonuclease
domain: CCR4-NOT transcription complex subunit 7, CAF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  348 bits (895), Expect = e-123
 Identities = 181/253 (71%), Positives = 209/253 (82%), Gaps = 2/253 (0%)

Query: 14  IREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDL 73
           I EVWA N+ EE   IR +I  YNY+ +DTEFPGVVA+P+G+FRS ++YQY  L+ NVDL
Sbjct: 2   ICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDL 61

Query: 74  LKIIQIGLTFFDSKSCTPPGPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEG 133
           LKIIQ+GLTF + +   PPG  +TWQFNFKF+L EDMYAQDSI+LL  SGIQF++H+EEG
Sbjct: 62  LKIIQLGLTFMNEQGEYPPGT-STWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEG 120

Query: 134 IEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLLMGTRSLPSEEAEFFELQRLFF 193
           IE   FAELL TSGVVL + VKWLSFHSGYDFGYL+K+L    +LP EE +FFE+ RLFF
Sbjct: 121 IETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKILTN-SNLPEEELDFFEILRLFF 179

Query: 194 KSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFEDA 253
             IYDVKYLMKSCKNLKGGLQEVAEQL+L RIGPQHQAGSDSLLTG  FFKMRE+FFED 
Sbjct: 180 PVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDH 239

Query: 254 IDDDKYCGHIYGL 266
           IDD KYCGH+YGL
Sbjct: 240 IDDAKYCGHLYGL 252
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d2d5ra1252 CCR4-NOT transcription complex subunit 7, CAF1 {Hu 100.0
d1uoca_286 Pop2 RNase D domain {Baker's yeast (Saccharomyces 100.0
d2guia1174 N-terminal exonuclease domain of the epsilon subun 98.6
d1w0ha_200 Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 98.48
d1y97a1228 Three prime repair exonuclease 2, TREX2 {Human (Ho 98.47
d2f96a1202 Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 98.33
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 98.28
d2qxfa1 467 Exonuclease I {Escherichia coli K12 (Escherichia c 98.21
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 97.81
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 97.36
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 96.45
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 94.62
d2igia1180 Oligoribonuclease {Escherichia coli [TaxId: 562]} 87.65
>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: CAF1-like ribonuclease
domain: CCR4-NOT transcription complex subunit 7, CAF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-89  Score=624.48  Aligned_cols=252  Identities=72%  Similarity=1.230  Sum_probs=246.9

Q ss_pred             cEEeccccCHHHHHHHHHHHhhhCCeeeeeccccccccccCCCCCCChHHHHHHHHhhhhcccceeeeeeeecCCCCCCC
Q psy6037          13 GIREVWARNVQEEFVHIRSLINTYNYIGIDTEFPGVVAKPLGDFRSTSEYQYHFLKINVDLLKIIQIGLTFFDSKSCTPP   92 (286)
Q Consensus        13 ~i~dVw~~N~~ee~~~I~~~i~~~~fIAiDtEFpGv~~~p~~~~~~t~e~~Y~~lr~nVd~l~iIQlGitl~~~~g~~p~   92 (286)
                      +|||||++||+|||+.|+++|++|+||||||||||++++|.+.+++++|+||+++|+||+.+++||+|||+++++|+.|.
T Consensus         1 ~i~eV~~~Nf~e~~~~i~~~i~~~~fVAiD~EF~G~~~~~~~~~~~t~~~~Y~~lr~nv~~~~iiQ~Glt~~~~~g~~~~   80 (252)
T d2d5ra1           1 RICEVWACNLDEEMKKIRQVIRKYNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQLGLTFMNEQGEYPP   80 (252)
T ss_dssp             CEEEECGGGHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCSCCSSHHHHHHHHHHHHHTTCCCCEEEEEEECTTSCCCS
T ss_pred             CeEEehhhhHHHHHHHHHHHHhcCCEEEEeeeccCcccCCCCccCCCHHHHHHHHHHHHhhcceeEEEEEeecccCCCCC
Confidence            59999999999999999999999999999999999999998888899999999999999999999999999999999987


Q ss_pred             CCcceEEEEEEecCCCcccchhHHHHHHHcCCChhhhhhCCCChHHHHHHHHhcCccccCCccEEEeecchhHHHHHHHH
Q psy6037          93 GPFTTWQFNFKFDLQEDMYAQDSIDLLQNSGIQFQRHKEEGIEPADFAELLTTSGVVLNDKVKWLSFHSGYDFGYLLKLL  172 (286)
Q Consensus        93 ~~~~~wqFNF~F~~~~d~~~~~SI~fL~~~G~DF~k~~~~GI~~~~F~ell~~SgLv~~~~v~Wvtfhg~yD~gyL~K~l  172 (286)
                      . +++|||||+|+...|+|+++||+||+++||||||++++|||+..|+++|++||++++++++||+|||+||||||+|+|
T Consensus        81 ~-~~~w~FNf~~~~~~~~~~~~Si~fL~~~G~DF~k~~~~GI~~~~f~~~l~~s~~~~~~~~~wv~f~g~yD~~yl~k~l  159 (252)
T d2d5ra1          81 G-TSTWQFNFKFNLTEDMYAQDSIELLTTSGIQFKKHEEEGIETQYFAELLMTSGVVLCEGVKWLSFHSGYDFGYLIKIL  159 (252)
T ss_dssp             S-CCEEEEEBCCCTTTSCCCHHHHHHHHHHTCCHHHHHHHCBCHHHHHHHHHTTTSSSSSSCEEEESSCHHHHHHHHHHH
T ss_pred             C-ceeEEEEEEeCCcccccCHHHHHHHHHcCCChHHHHHcCCCHHHHHHHHHhhhhhhcCCCcEEEecchhHHHHHHHHH
Confidence            7 899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCCCCCCChHHHHHHHHhhcCCccchhHHHHhhccccccHHHHHhHcCCccCCCCcccchhhHHHHHHHHHHHHHhcCC
Q psy6037         173 MGTRSLPSEEAEFFELQRLFFKSIYDVKYLMKSCKNLKGGLQEVAEQLDLSRIGPQHQAGSDSLLTGRVFFKMRELFFED  252 (286)
Q Consensus       173 t~~~~LP~~~~~F~~~l~~~FP~iYD~K~l~~~~~~l~ggL~~lA~~L~v~r~g~~HqAGsDSllT~~~F~~l~~~~~~~  252 (286)
                      ||+ |||+++++|+++++.+||++||||||++.|.++++||++||+.|||+|+|++||||||||||++||++|+++++++
T Consensus       160 ~~~-~LP~~~~eF~~~v~~~FP~vyDtK~l~~~~~~~~~~L~~la~~L~v~~~g~~H~AG~DsllT~~~F~~l~~~~~~~  238 (252)
T d2d5ra1         160 TNS-NLPEEELDFFEILRLFFPVIYDVKYLMKSCKNLKGGLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFED  238 (252)
T ss_dssp             HTS-CCCSSHHHHHHHHHHHCSCEEEHHHHGGGCTTCCSSHHHHHHHHTCCCCSSTTSHHHHHHHHHHHHHHHHHHTSCS
T ss_pred             cCC-CCCCCHHHHHHHHHHHCchHhhHHHHHhhccCCCchHHHHHHHcCCCCCCCCcchhHHHHHHHHHHHHHHHHHhcC
Confidence            997 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccceEEec
Q psy6037         253 AIDDDKYCGHIYGL  266 (286)
Q Consensus       253 ~~~~~~~~g~i~Gl  266 (286)
                      +++.++++|+||||
T Consensus       239 ~~~~~~~~g~i~Gl  252 (252)
T d2d5ra1         239 HIDDAKYCGHLYGL  252 (252)
T ss_dssp             SCCHHHHTTBCTTC
T ss_pred             CCcHHHhCCcccCC
Confidence            88888999999997
>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Back     information, alignment and structure