Psyllid ID: psy6043

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASGLD
cccHHHHHHHHHHHccccccEEEEEcHHHHHHccccHHHHHHcccccccccccEEEEEEEccccccccccEEEEEccEEEccccccccccccHHcccccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccEEEEccccEEEEccccHHHHHHHHHHHHHHHHHcccccccccEEEHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccccccHHHcccccccccccccccHHHHHHHHHHHccc
ccHHHHHHHHHHHHHHccccEEEEEcHHHHHHccccEEEEEEcccccccccccEEEEEEEEcccccccccEEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEcccccccccccEEEcccccEEEcccccccHHHHHHHHHHHHHHHcccEEccEEEEHHHHHcHHHEHHcccccccccccHHHHHHHHHHHHHHccccccccHccccccHHHHHHHHcccHHHHHHccccccccHHHHHHHHHHHHHHHcccc
MAPPKVEEYILETfkntpsikiniikdpkildkeyplfsaVNRAASVIDRHQGRVIFleyeptsssptsslflvgkgvtydtggadikisgnmagmARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNscgensyvsdEVVVsragkrirvtntdaeGRFAMADVLAHMAEKAKDAVNPHLFTIATLTghacltvgegysivmdngparqenNAVLLSEtgeamgdpfeisrIRREDfrffkskcegeDLIQsgmkssgsnsrghqgpgafligasgld
MAPPKVEEYILEtfkntpsikiniikdpkiLDKEYPLFSAVNRAASVIDRHQGRVIFLEyeptsssptssLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVrnscgensyvsdevvvsragkrirvtntdaegRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSetgeamgdpfeisRIRREDFRFFKSKCEGEDLIQSGMKssgsnsrghqgpgafligasgld
MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEptsssptssLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASGLD
*******EYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFL************LFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDN***********************EISRIRREDFRFFK*************************************
MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASGL*
MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKSKCEGEDLIQS************QGPGAFLIGASGLD
MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKSKCEGEDLIQSGMKSSGSN****QG*GAFLIGAS***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRREDFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASGLD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query282 2.2.26 [Sep-21-2011]
Q27245522 Putative aminopeptidase W yes N/A 0.989 0.534 0.498 4e-73
O67868493 Probable cytosol aminopep yes N/A 0.641 0.367 0.379 4e-26
Q7VGF0474 Probable cytosol aminopep yes N/A 0.765 0.455 0.351 6e-25
Q9PP04483 Probable cytosol aminopep yes N/A 0.677 0.395 0.386 1e-23
B6JGL8500 Probable cytosol aminopep yes N/A 0.609 0.344 0.363 2e-23
P47707520 Probable cytosol aminopep N/A N/A 0.691 0.375 0.334 4e-23
C0QSL9497 Probable cytosol aminopep yes N/A 0.645 0.366 0.354 5e-23
Q8D295501 Probable cytosol aminopep yes N/A 0.542 0.305 0.364 1e-22
Q215R8499 Probable cytosol aminopep yes N/A 0.599 0.338 0.378 2e-22
B3Q9R8500 Probable cytosol aminopep yes N/A 0.606 0.342 0.377 3e-22
>sp|Q27245|YH24_CAEEL Putative aminopeptidase W07G4.4 OS=Caenorhabditis elegans GN=W07G4.4 PE=1 SV=1 Back     alignment and function desciption
 Score =  275 bits (702), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 141/283 (49%), Positives = 186/283 (65%), Gaps = 4/283 (1%)

Query: 1   MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
           MAPP+V EYI   F N  +IK+ ++ D  ++ K++PL +AVNRAA+ +  HQ R+I LEY
Sbjct: 198 MAPPRVAEYIQGAFANG-NIKVTVVDDQSVILKDFPLMAAVNRAANCVKEHQARLIRLEY 256

Query: 61  EPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPK- 119
                +   + F+VGKGVT DTGG D+K  G+M GM RDK G+AVV GF KA+ +L+PK 
Sbjct: 257 VGEGET-QDTFFVVGKGVTIDTGGCDLKTGGHMFGMCRDKYGSAVVGGFFKAIDVLKPKN 315

Query: 120 VRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDA 179
           ++ VG + +VRNS G ++Y  DEV+ SR+GKRI + NTDAEGR  M D L    E+A +A
Sbjct: 316 IKAVGYMCMVRNSIGSHAYTCDEVITSRSGKRIHIYNTDAEGRLTMLDPLTLAKEEALNA 375

Query: 180 VNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239
            NPHLFT+ATLTGH  L+ G  Y+ +MDNGPA+    A  +   G+  G P EISR+  E
Sbjct: 376 KNPHLFTVATLTGHEVLSYGY-YAAIMDNGPAKASGWARRVQNVGDEFGQPIEISRLHPE 434

Query: 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASGLD 282
           DF F  ++CE  DL Q   K S +  RGHQ P AFL  AS +D
Sbjct: 435 DFAFHMAECEQADLRQGNTKPSVATLRGHQTPAAFLQMASRID 477

Caenorhabditis elegans (taxid: 6239)
EC: 3EC: .EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|O67868|AMPA_AQUAE Probable cytosol aminopeptidase OS=Aquifex aeolicus (strain VF5) GN=pepA PE=3 SV=1 Back     alignment and function description
>sp|Q7VGF0|AMPA_HELHP Probable cytosol aminopeptidase OS=Helicobacter hepaticus (strain ATCC 51449 / 3B1) GN=pepA PE=3 SV=1 Back     alignment and function description
>sp|Q9PP04|AMPA_CAMJE Probable cytosol aminopeptidase OS=Campylobacter jejuni subsp. jejuni serotype O:2 (strain NCTC 11168) GN=pepA PE=3 SV=1 Back     alignment and function description
>sp|B6JGL8|AMPA_OLICO Probable cytosol aminopeptidase OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=pepA PE=3 SV=1 Back     alignment and function description
>sp|P47707|AMPA_MYCSA Probable cytosol aminopeptidase OS=Mycoplasma salivarium GN=pepA PE=3 SV=1 Back     alignment and function description
>sp|C0QSL9|AMPA_PERMH Probable cytosol aminopeptidase OS=Persephonella marina (strain DSM 14350 / EX-H1) GN=pepA PE=3 SV=1 Back     alignment and function description
>sp|Q8D295|AMPA_WIGBR Probable cytosol aminopeptidase OS=Wigglesworthia glossinidia brevipalpis GN=pepA PE=3 SV=1 Back     alignment and function description
>sp|Q215R8|AMPA_RHOPB Probable cytosol aminopeptidase OS=Rhodopseudomonas palustris (strain BisB18) GN=pepA PE=3 SV=1 Back     alignment and function description
>sp|B3Q9R8|AMPA_RHOPT Probable cytosol aminopeptidase OS=Rhodopseudomonas palustris (strain TIE-1) GN=pepA PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
307193513 561 Putative aminopeptidase W07G4.4 [Harpegn 0.996 0.500 0.625 6e-97
345497946 596 PREDICTED: putative aminopeptidase W07G4 0.996 0.471 0.626 2e-96
156545944 526 PREDICTED: putative aminopeptidase W07G4 0.996 0.534 0.626 2e-96
383860042 641 PREDICTED: putative aminopeptidase W07G4 0.996 0.438 0.616 2e-95
91091270 515 PREDICTED: similar to Sb:cb283 protein [ 0.996 0.545 0.591 9e-94
328780399 517 PREDICTED: putative aminopeptidase W07G4 0.996 0.543 0.605 2e-93
332375943 516 unknown [Dendroctonus ponderosae] 0.992 0.542 0.586 2e-93
350405407 535 PREDICTED: LOW QUALITY PROTEIN: putative 0.996 0.525 0.598 7e-93
307185505 431 Putative aminopeptidase W07G4.4 [Campono 0.992 0.649 0.618 1e-92
291242419 2644 PREDICTED: dipeptidase B-like [Saccoglos 0.992 0.105 0.586 6e-91
>gi|307193513|gb|EFN76290.1| Putative aminopeptidase W07G4.4 [Harpegnathos saltator] Back     alignment and taxonomy information
 Score =  359 bits (922), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 177/283 (62%), Positives = 214/283 (75%), Gaps = 2/283 (0%)

Query: 1   MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
           MAPP+VEEY+ + F ++ ++ + +I D K L +EYPLF+ VNRAASVI RH GR+IFL Y
Sbjct: 228 MAPPRVEEYLADAFYDS-NVTMQVICDQKTLLQEYPLFACVNRAASVIARHAGRIIFLTY 286

Query: 61  EPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQP-K 119
           EP +S    ++ LVGKGVTYDTGGADIK  G M+GM+RDKCGAA  AGFM+ V  L+P  
Sbjct: 287 EPPTSCVLETIMLVGKGVTYDTGGADIKYGGVMSGMSRDKCGAAACAGFMQVVNRLKPPT 346

Query: 120 VRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDA 179
           V+VV AL +VRNS GEN YVSDEV+ +++G R+RV NTDAEGR AMAD L H+ E A +A
Sbjct: 347 VKVVAALCMVRNSVGENCYVSDEVITAKSGMRVRVGNTDAEGRMAMADALYHLKEMALNA 406

Query: 180 VNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239
           VNPHLFT+ATLTGHA LTVG GY+I MDN  AR   NA  L  +GE MGDPFEISRIRRE
Sbjct: 407 VNPHLFTVATLTGHAMLTVGPGYTIAMDNAVARANCNAEKLQASGEVMGDPFEISRIRRE 466

Query: 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASGLD 282
           DFR  + + EG+D++Q+  K S    RGHQGP AFLI ASGLD
Sbjct: 467 DFRTHRGRAEGDDVLQALNKPSSKTPRGHQGPAAFLIRASGLD 509

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345497946|ref|XP_003428103.1| PREDICTED: putative aminopeptidase W07G4.4-like isoform 3 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|156545944|ref|XP_001603380.1| PREDICTED: putative aminopeptidase W07G4.4-like isoform 1 [Nasonia vitripennis] gi|345497943|ref|XP_003428102.1| PREDICTED: putative aminopeptidase W07G4.4-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|383860042|ref|XP_003705500.1| PREDICTED: putative aminopeptidase W07G4.4-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|91091270|ref|XP_969358.1| PREDICTED: similar to Sb:cb283 protein [Tribolium castaneum] gi|270014120|gb|EFA10568.1| hypothetical protein TcasGA2_TC012824 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328780399|ref|XP_394104.2| PREDICTED: putative aminopeptidase W07G4.4-like [Apis mellifera] Back     alignment and taxonomy information
>gi|332375943|gb|AEE63112.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|350405407|ref|XP_003487425.1| PREDICTED: LOW QUALITY PROTEIN: putative aminopeptidase W07G4.4-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307185505|gb|EFN71489.1| Putative aminopeptidase W07G4.4 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|291242419|ref|XP_002741105.1| PREDICTED: dipeptidase B-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query282
ZFIN|ZDB-GENE-090312-55525 zgc:152830 "zgc:152830" [Danio 0.992 0.533 0.561 8.7e-79
FB|FBgn0000454508 Dip-B "Dipeptidase B" [Drosoph 0.985 0.547 0.550 8.1e-76
WB|WBGene00002250522 lap-2 [Caenorhabditis elegans 0.989 0.534 0.498 7.2e-68
TIGR_CMR|SO_1117517 SO_1117 "cytosol aminopeptidas 0.985 0.537 0.457 2.1e-61
TIGR_CMR|CJE_1007483 CJE_1007 "cytosol aminopeptida 0.751 0.438 0.383 2.9e-24
TIGR_CMR|VC_2501503 VC_2501 "aminopeptidase A/I" [ 0.666 0.373 0.340 5.6e-22
UNIPROTKB|P68767503 pepA [Escherichia coli K-12 (t 0.542 0.304 0.379 3.3e-21
TIGR_CMR|BA_5155494 BA_5155 "cytosol aminopeptidas 0.531 0.303 0.376 3.6e-21
TIGR_CMR|CBU_0572458 CBU_0572 "cytosol aminopeptida 0.755 0.465 0.330 6.5e-21
UNIPROTKB|Q2GLA3510 pepA "Probable cytosol aminope 0.773 0.427 0.320 1.2e-20
ZFIN|ZDB-GENE-090312-55 zgc:152830 "zgc:152830" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 159/283 (56%), Positives = 201/283 (71%)

Query:     1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
             MA P+V EY+   FK++P +K+ ++ +   L+KEYP  +AVNR A+ + RHQ RVI L+Y
Sbjct:   202 MAAPRVAEYVQSVFKDSP-VKVTVVSNLNTLEKEYPCLAAVNRCANAVPRHQARVIKLQY 260

Query:    61 EXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPK- 119
                       L LVGKG+TYDTGGADIK  G MAGM RDKCG+A VAGF + +A L+PK 
Sbjct:   261 -CGEGPIEQTLMLVGKGITYDTGGADIKAGGIMAGMHRDKCGSAAVAGFFQILAKLKPKH 319

Query:   120 VRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDA 179
             ++VVGA+A+VRNS G + YV+DE+VVSRAG+RIRV NTDAEGR  M D+L  M E+A   
Sbjct:   320 LKVVGAMAMVRNSVGSDCYVADELVVSRAGRRIRVGNTDAEGRMVMVDLLCEMKEQALQE 379

Query:   180 VNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239
             V+PHLFTIATLTGHA   +G  YSI+MDNG AR+  N +   + GE +GD FE+S IRRE
Sbjct:   380 VSPHLFTIATLTGHAIRAMGPKYSIIMDNGAARRAGNDLEWQKAGEVLGDLFEVSTIRRE 439

Query:   240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASGLD 282
             D+ F K K E ED++Q+    S +  RGHQ P AFLI ASGLD
Sbjct:   440 DYEFHKGKSEYEDILQANNLPSSATPRGHQTPAAFLIMASGLD 482
GO:0019538 "protein metabolic process" evidence=IEA
GO:0004177 "aminopeptidase activity" evidence=IEA
GO:0006508 "proteolysis" evidence=IEA
GO:0030145 "manganese ion binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA
GO:0008235 "metalloexopeptidase activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
FB|FBgn0000454 Dip-B "Dipeptidase B" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00002250 lap-2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TIGR_CMR|SO_1117 SO_1117 "cytosol aminopeptidase, putative" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_1007 CJE_1007 "cytosol aminopeptidase family protein" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2501 VC_2501 "aminopeptidase A/I" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P68767 pepA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5155 BA_5155 "cytosol aminopeptidase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0572 CBU_0572 "cytosol aminopeptidase family protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q2GLA3 pepA "Probable cytosol aminopeptidase" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
cd00433468 cd00433, Peptidase_M17, Cytosol aminopeptidase fam 1e-80
COG0260485 COG0260, PepB, Leucyl aminopeptidase [Amino acid t 4e-46
pfam00883311 pfam00883, Peptidase_M17, Cytosol aminopeptidase f 2e-44
PRK00913483 PRK00913, PRK00913, multifunctional aminopeptidase 4e-36
PTZ00412569 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisi 5e-28
PRK05015424 PRK05015, PRK05015, aminopeptidase B; Provisional 5e-17
>gnl|CDD|238247 cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains Back     alignment and domain information 
 Score =  250 bits (642), Expect = 1e-80
 Identities = 88/275 (32%), Positives = 129/275 (46%), Gaps = 20/275 (7%)

Query: 1   MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
           + P  + E   E  K    +K+ ++ + ++ +       AV + +        R+I LEY
Sbjct: 171 LTPTYLAEEAKELAKEL-GVKVEVLDEKELEELGMGALLAVGKGSE----EPPRLIVLEY 225

Query: 61  EPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKV 120
           +   +S    + LVGKG+T+DTGG  +K +  M GM  D  GAA V G MKA+A L+  V
Sbjct: 226 KGKGAS-KKPIALVGKGITFDTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPV 284

Query: 121 RVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAV 180
            VVG L +  N    N+Y   +V+ SR+GK + + NTDAEGR  +AD L +    A++  
Sbjct: 285 NVVGVLPLAENMISGNAYRPGDVITSRSGKTVEILNTDAEGRLVLADALTY----AQEFK 340

Query: 181 NPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRED 240
              +  IATLTG A + +G  Y+ +  N     +  A  L   GEA G+      +  E 
Sbjct: 341 PDLIIDIATLTGAAVVALGHDYAGLFTND----DELAKQLLAAGEASGERVWRLPLWEEY 396

Query: 241 FRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFL 275
               KS     DL   G    G    G      FL
Sbjct: 397 REQLKSDI--ADLKNIG----GRGPAGSITAALFL 425

Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants. Length = 468
>gnl|CDD|223338 COG0260, PepB, Leucyl aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216171 pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain Back     alignment and domain information
>gnl|CDD|234863 PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional Back     alignment and domain information
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional Back     alignment and domain information
>gnl|CDD|235330 PRK05015, PRK05015, aminopeptidase B; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 282
cd00433468 Peptidase_M17 Cytosol aminopeptidase family, N-ter 100.0
COG0260485 PepB Leucyl aminopeptidase [Amino acid transport a 100.0
PF00883311 Peptidase_M17: Cytosol aminopeptidase family, cata 100.0
PRK00913483 multifunctional aminopeptidase A; Provisional 100.0
PTZ00412569 leucyl aminopeptidase; Provisional 100.0
PRK05015424 aminopeptidase B; Provisional 100.0
KOG2597|consensus513 100.0
>cd00433 Peptidase_M17 Cytosol aminopeptidase family, N-terminal and catalytic domains Back     alignment and domain information 
Probab=100.00  E-value=1.4e-100  Score=753.80  Aligned_cols=259  Identities=33%  Similarity=0.491  Sum_probs=246.4

Q ss_pred             CCcHHHHHHHHHhhcCCCCeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceEE
Q psy6043           1 MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVTY   80 (282)
Q Consensus         1 MtP~~~a~~~~~~~~~~~~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiTF   80 (282)
                      |||+.||+++++++++++ ++|+|++++|++++|||+||+|||||.    +|||||+|+|+|++ +.+++|+||||||||
T Consensus       171 ~tP~~~a~~a~~l~~~~g-~~v~V~~~~~l~~~gmg~~laVg~GS~----~~p~lv~l~Y~g~~-~~~~~i~LVGKGiTF  244 (468)
T cd00433         171 LTPTYLAEEAKELAKELG-VKVEVLDEKELEELGMGALLAVGKGSE----EPPRLIVLEYKGKG-ASKKPIALVGKGITF  244 (468)
T ss_pred             CCHHHHHHHHHHHHHhcC-CEEEEEcHHHHHhCCCCceeeecccCC----CCCEEEEEEECCCC-CCCCcEEEEcCceEe
Confidence            799999999999999997 999999999999999999999999986    89999999999987 568899999999999


Q ss_pred             ccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCcc
Q psy6043          81 DTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAE  160 (282)
Q Consensus        81 DsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDAE  160 (282)
                      |||||||||+.+|.+||+||+|||+|+|+|++++++++|+||++++|+|||||||+|||||||||+||||||||.|||||
T Consensus       245 DsGG~slKp~~~M~~Mk~DM~GAAaVlga~~aia~l~~~vnV~~i~~~~EN~is~~A~rPgDVi~s~~GkTVEI~NTDAE  324 (468)
T cd00433         245 DTGGLSLKPAAGMDGMKYDMGGAAAVLGAMKAIAELKLPVNVVGVLPLAENMISGNAYRPGDVITSRSGKTVEILNTDAE  324 (468)
T ss_pred             cCCCccccCccChhhccccchhHHHHHHHHHHHHHcCCCceEEEEEEeeecCCCCCCCCCCCEeEeCCCcEEEEecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCch
Q psy6043         161 GRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE  239 (282)
Q Consensus       161 GRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~~  239 (282)
                      |||||||+|+||++     ++| .|||+|||||||++|||++++|+|+|++    +|++++++||+++||++|||||++ 
T Consensus       325 GRLVLaDal~ya~~-----~~p~~iIDiATLTGA~~vALG~~~ag~~sn~d----~l~~~l~~Ag~~~gE~~WrlPl~~-  394 (468)
T cd00433         325 GRLVLADALTYAQE-----FKPDLIIDIATLTGAAVVALGHDYAGLFTNDD----ELAKQLLAAGEASGERVWRLPLWE-  394 (468)
T ss_pred             cceeehhHHHHHhh-----cCCCEEEEecchHHHHHHHcCCCceEEecCCH----HHHHHHHHHHHHhCCcEeecCCCH-
Confidence            99999999999974     689 7999999999999999999999999995    699999999999999999999965 


Q ss_pred             hhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043         240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG  280 (282)
Q Consensus       240 ~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~  280 (282)
                      +| ++.++|++|||+|++..    +.+|+|+||+||++|.+
T Consensus       395 ~y-~~~lks~vADl~N~~~~----~~~g~~tAA~FL~~Fv~  430 (468)
T cd00433         395 EY-REQLKSDIADLKNIGGR----GPAGSITAALFLKEFVG  430 (468)
T ss_pred             HH-HHHcCCCchhhhCCCCC----CCCcccHHHHHHHHHhC
Confidence            44 36789999999999842    36899999999999986

Family M17 contains zinc- and manganese-dependent exopeptidases ( EC 3.4.11.1), including leucine aminopeptidase. They catalyze removal of amino acids from the N-terminus of a protein and play a key role in protein degradation and in the metabolism of biologically active peptides. They do not contain HEXXH motif (which is used as one of the signature patterns to group the peptidase families) in the metal-binding site. The two associated zinc ions and the active site are entirely enclosed within the C-terminal catalytic domain in leucine aminopeptidase. The enzyme is a hexamer, with the catalytic domains clustered around the three-fold axis, and the two trimers related to one another by a two-fold rotation. The N-terminal domain is structurally similar to the ADP-ribose binding Macro domain. This family includes proteins from bacteria, archaea, animals and plants.
>COG0260 PepB Leucyl aminopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00883 Peptidase_M17: Cytosol aminopeptidase family, catalytic domain; InterPro: IPR000819 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PRK00913 multifunctional aminopeptidase A; Provisional Back     alignment and domain information
>PTZ00412 leucyl aminopeptidase; Provisional Back     alignment and domain information
>PRK05015 aminopeptidase B; Provisional Back     alignment and domain information
>KOG2597|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3kzw_A515 Crystal Structure Of Cytosol Aminopeptidase From St 4e-25
3ij3_A482 1.8 Angstrom Resolution Crystal Structure Of Cytoso 7e-22
1gyt_A503 E. Coli Aminopeptidase A (Pepa) Length = 503 8e-22
3h8e_A497 Low Ph Native Structure Of Leucine Aminopeptidase F 3e-19
2j9a_A487 Bllap In Complex With Microginin Fr1 Length = 487 1e-18
1lcp_A484 Bovine Lens Leucine Aminopeptidase Complexed With L 1e-18
1bpm_A487 Differentiation And Identification Of The Two Catal 1e-18
1bll_E488 X-Ray Crystallographic Determination Of The Structu 1e-18
2ewb_A486 The Crystal Structure Of Bovine Lens Leucine Aminop 1e-18
3jru_B490 Crystal Structure Of Leucyl Aminopeptidase (Pepa) F 6e-17
3pei_A486 Crystal Structure Of Cytosol Aminopeptidase From Fr 3e-16
3kqx_A528 Structure Of A Protease 1 Length = 528 5e-16
4efd_A522 Crystal Structure Of An M17 Aminopeptidase From Try 1e-15
2hb6_A491 Structure Of Caenorhabditis Elegans Leucine Aminope 1e-13
>pdb|3KZW|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From Staphylococcus Aureus Col Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 118/222 (53%), Gaps = 16/222 (7%)
Query: 1   MAPPKVEEYILETFKNTPSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEY 60
           + P    E I+  FKNT  +K+++     ++ + + L  AV + +    +H+ R++ + Y
Sbjct: 214 LTPQTFAEDIVNHFKNT-KVKVDVKDYDTLVSEGFGLLQAVGKGS----KHKPRLVTITY 268
Query: 61  EXXXXXXXXXLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKV 120
                     + LVGKG+TYD+GG  IK    MA M  D CGAA V G ++A + LQ  V
Sbjct: 269 NGKDKDEAP-IALVGKGITYDSGGYSIKTKNGMATMKFDMCGAANVVGIIEAASRLQLPV 327
Query: 121 RVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAV 180
            +VG LA   N   E S   D+V  + +G+ + V NTDAEGR  +AD + + A + + +V
Sbjct: 328 NIVGVLACAENMINEASMKPDDVFTALSGETVEVMNTDAEGRLVLADAVFY-ANQYQPSV 386
Query: 181 NPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSE 222
              +   ATLTG A + +G+      D   A + N+ V+L++
Sbjct: 387 ---IMDFATLTGAAIVALGD------DKAAAFESNSKVILND 419
>pdb|3IJ3|A Chain A, 1.8 Angstrom Resolution Crystal Structure Of Cytosol Aminopeptidase From Coxiella Burnetii Length = 482 Back     alignment and structure
>pdb|1GYT|A Chain A, E. Coli Aminopeptidase A (Pepa) Length = 503 Back     alignment and structure
>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From Pseud Putida Length = 497 Back     alignment and structure
>pdb|2J9A|A Chain A, Bllap In Complex With Microginin Fr1 Length = 487 Back     alignment and structure
>pdb|1LCP|A Chain A, Bovine Lens Leucine Aminopeptidase Complexed With L-Leucine Phosphonic Acid Length = 484 Back     alignment and structure
>pdb|1BPM|A Chain A, Differentiation And Identification Of The Two Catalytic Metal Binding Sites In Bovine Lens Leucine Aminopeptidase By X-Ray Crystallography Length = 487 Back     alignment and structure
>pdb|1BLL|E Chain E, X-Ray Crystallographic Determination Of The Structure Of Bovine Lens Leucine Aminopeptidase Complexed With Amastatin: Formulation Of A Catalytic Mechanism Featuring A Gem-Diolate Transition State Length = 488 Back     alignment and structure
>pdb|2EWB|A Chain A, The Crystal Structure Of Bovine Lens Leucine Aminopeptidase In Complex With Zofenoprilat Length = 486 Back     alignment and structure
>pdb|3JRU|B Chain B, Crystal Structure Of Leucyl Aminopeptidase (Pepa) From Xoo0834, Xanthomonas Oryzae Pv. Oryzae Kacc10331 Length = 490 Back     alignment and structure
>pdb|3PEI|A Chain A, Crystal Structure Of Cytosol Aminopeptidase From Francisella Tularensis Length = 486 Back     alignment and structure
>pdb|3KQX|A Chain A, Structure Of A Protease 1 Length = 528 Back     alignment and structure
>pdb|4EFD|A Chain A, Crystal Structure Of An M17 Aminopeptidase From Trypanosoma Brucei, Tb427tmp.02.4440 Length = 522 Back     alignment and structure
>pdb|2HB6|A Chain A, Structure Of Caenorhabditis Elegans Leucine Aminopeptidase (Lap1) Length = 491 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query282
3ij3_A482 Cytosol aminopeptidase; PEPB, peptidase M17 family 5e-45
2hc9_A491 Leucine aminopeptidase 1; carbonate, structural ge 2e-41
3pei_A486 Cytosol aminopeptidase; structural genomics, cente 2e-40
4efd_A522 Aminopeptidase; structural genomics, structural ge 2e-40
3jru_B490 Probable cytosol aminopeptidase; bacterial blight, 3e-40
1gyt_A503 Cytosol aminopeptidase; hydrolase, DNA recombinati 5e-40
3kzw_A515 Cytosol aminopeptidase; hydrolase, manganese bindi 1e-39
3h8g_F497 Cytosol aminopeptidase; hydrolase, manganese, meta 2e-39
1lam_A484 Leucine aminopeptidase; exopeptidase, metallopepti 3e-37
3kr4_A528 M17 leucyl aminopeptidase; protease, hydrolase; HE 3e-36
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} Length = 482 Back     alignment and structure
 Score =  157 bits (399), Expect = 5e-45
 Identities = 73/212 (34%), Positives = 105/212 (49%), Gaps = 16/212 (7%)

Query: 20  IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVT 79
            K+ II + K L+ E+P   AV RA S        +I L++    +     + LVGKGV 
Sbjct: 202 AKVKII-ESKDLETEFPAIYAVGRAGS----RPPLLIDLKWGDIKAPK---VTLVGKGVC 253

Query: 80  YDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYV 139
           +D+GG DIK  G M  M +D  GAA   G  + + + Q  VR+   +  V N+ G  SY 
Sbjct: 254 FDSGGLDIKTPGGMLLMKKDMGGAAHALGLARMIMLQQLPVRLRLLIPAVENAIGSRSYR 313

Query: 140 SDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDAVNPHLFTIATLTGHACLTVG 199
             +VV +RA K I +TNTDAEGR  +AD LA   ++  D +       +TLTG A + +G
Sbjct: 314 PGDVVQTRARKTIEITNTDAEGRVVLADALAEAVKEDPDLI----IDFSTLTGAARIALG 369

Query: 200 EGYSIVMDNGPARQENNAVLLSETGEAMGDPF 231
                +  N    Q++ A  L +      DP 
Sbjct: 370 PNLPALFAN----QDSLAQALIDASLKTDDPL 397
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A Length = 491 Back     alignment and structure
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp} Length = 486 Back     alignment and structure
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei} Length = 522 Back     alignment and structure
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV} Length = 490 Back     alignment and structure
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1 Length = 503 Back     alignment and structure
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} Length = 515 Back     alignment and structure
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A* Length = 497 Back     alignment and structure
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A* Length = 484 Back     alignment and structure
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A* Length = 528 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
1gyt_A503 Cytosol aminopeptidase; hydrolase, DNA recombinati 100.0
1lam_A484 Leucine aminopeptidase; exopeptidase, metallopepti 100.0
3h8g_F497 Cytosol aminopeptidase; hydrolase, manganese, meta 100.0
3pei_A486 Cytosol aminopeptidase; structural genomics, cente 100.0
3kzw_A515 Cytosol aminopeptidase; hydrolase, manganese bindi 100.0
3jru_B490 Probable cytosol aminopeptidase; bacterial blight, 100.0
4efd_A522 Aminopeptidase; structural genomics, structural ge 100.0
2hc9_A491 Leucine aminopeptidase 1; carbonate, structural ge 100.0
3kr4_A528 M17 leucyl aminopeptidase; protease, hydrolase; HE 100.0
3ij3_A482 Cytosol aminopeptidase; PEPB, peptidase M17 family 100.0
>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A {Escherichia coli} SCOP: c.56.5.3 c.50.1.1 Back     alignment and structure
Probab=100.00  E-value=4.7e-101  Score=760.84  Aligned_cols=259  Identities=28%  Similarity=0.411  Sum_probs=244.8

Q ss_pred             CCcHHHHHHHHHhhcCCCC-eEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCC-CCCceEeeccce
Q psy6043           1 MAPPKVEEYILETFKNTPS-IKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSS-PTSSLFLVGKGV   78 (282)
Q Consensus         1 MtP~~~a~~~~~~~~~~~~-v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~-~~~~iaLVGKGi   78 (282)
                      |||++||++++++++++++ ++|+|++++||+++|||+||+|||||.    +|||||+|+|+|.+ + .++||+||||||
T Consensus       198 ~tP~~lA~~a~~la~~~g~~~~v~Vl~~~~l~~~gmg~~laVg~GS~----~pPrli~l~Y~g~~-~~~~~~i~LVGKGI  272 (503)
T 1gyt_A          198 CNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQ----NESLMSVIEYKGNA-SEDARPIVLVGKGL  272 (503)
T ss_dssp             CSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHHHHTSS----SCCEEEEEEEECCC-CTTCCCEEEEEEEE
T ss_pred             cCHHHHHHHHHHHHHhcCCceEEEEEcHHHHHHCCCCceeeecccCC----CCCeEEEEEECCCC-CCCCCcEEEEcCce
Confidence            8999999999999999876 999999999999999999999999986    89999999999976 4 578999999999


Q ss_pred             EEccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCC
Q psy6043          79 TYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTD  158 (282)
Q Consensus        79 TFDsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTD  158 (282)
                      |||||||||||+.+|.+||+||+|||+|+|+|++++++++|+||+++||+|||||||+|||||||||+||||||||.|||
T Consensus       273 TFDsGGislKp~~~M~~MK~DM~GAAaVlg~~~aia~l~l~vnV~~~i~~~ENm~sg~A~rPgDVits~~GkTVEV~NTD  352 (503)
T 1gyt_A          273 TFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTD  352 (503)
T ss_dssp             EEECCTTSCCCSTTGGGGGGGGHHHHHHHHHHHHHHHHTCSSEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTT
T ss_pred             EecCCCccccCCcChhhcccccchHHHHHHHHHHHHHcCCCeeEEEEEEeeccCCCCCCCCCCCEEEeCCCcEEEecCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCC
Q psy6043         159 AEGRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIR  237 (282)
Q Consensus       159 AEGRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~  237 (282)
                      |||||||||+|+||+     +++| .|||+|||||||++|||++++|+|+||+    +|+++|++||+++||++|||||+
T Consensus       353 AEGRLVLADaL~yA~-----~~~P~~iID~ATLTGA~~vALG~~~ag~~sn~d----~l~~~l~~Ag~~~ge~~WrmPl~  423 (503)
T 1gyt_A          353 AEGRLVLCDVLTYVE-----RFEPEAVIDVATLTGACVIALGHHITGLMANHN----PLAHELIAASEQSGDRAWRLPLG  423 (503)
T ss_dssp             CCHHHHHHHHHHHGG-----GGCCSEEEEEECCCHHHHHHHTTTSEEEEESCH----HHHHHHHHHHHHHTCCEEECCCC
T ss_pred             cchhhHhHHHHHHHH-----HcCCCEEEEhhhhHHHHHHHhCCCceEEEeCCH----HHHHHHHHHHHHhCCceeeCCCC
Confidence            999999999999996     3789 7999999999999999999999999995    69999999999999999999996


Q ss_pred             chhhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043         238 REDFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG  280 (282)
Q Consensus       238 ~~~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~  280 (282)
                      + +|+ ..++|++|||+|++.     +.+|+||||+||++|.+
T Consensus       424 ~-~y~-~~l~S~~ADl~N~g~-----~~~GsitAA~FL~~Fv~  459 (503)
T 1gyt_A          424 D-EYQ-EQLESNFADMANIGG-----RPGGAITAGCFLSRFTR  459 (503)
T ss_dssp             H-HHH-GGGCCSSSSEESCCC-----STTHHHHHHHHHHTTCT
T ss_pred             H-HHH-HHcCCchhhhcCCCC-----CCCchhHHHHHHHHhCC
Confidence            5 443 567899999999862     46899999999999975
>1lam_A Leucine aminopeptidase; exopeptidase, metallopeptidase, hydrolase (A aminoacylpeptide); 1.60A {Bos taurus} SCOP: c.56.5.3 c.50.1.1 PDB: 1lan_A 1lcp_A* 1lap_A 1bpn_A 1bpm_A 1bll_E* 2j9a_A* 2ewb_A* Back     alignment and structure
>3h8g_F Cytosol aminopeptidase; hydrolase, manganese, metal-binding, proteas; HET: BES; 1.50A {Pseudomonas putida} PDB: 3h8e_A 3h8f_A* Back     alignment and structure
>3pei_A Cytosol aminopeptidase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich; HET: MSE; 2.70A {Francisella tularensis subsp} Back     alignment and structure
>3kzw_A Cytosol aminopeptidase; hydrolase, manganese binding, protease, structural genomics; 2.70A {Staphylococcus aureus subsp} Back     alignment and structure
>3jru_B Probable cytosol aminopeptidase; bacterial blight, XOO0834, PEPA, xanthomonas oryzae PV. ORYZ KACC10331, hydrolase, manganese; 2.60A {Xanthomonas oryzae PV} Back     alignment and structure
>4efd_A Aminopeptidase; structural genomics, structural genomics consortium, SGC, hydrolase; 2.45A {Trypanosoma brucei brucei} Back     alignment and structure
>2hc9_A Leucine aminopeptidase 1; carbonate, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics; 1.85A {Caenorhabditis elegans} PDB: 2hb6_A Back     alignment and structure
>3kr4_A M17 leucyl aminopeptidase; protease, hydrolase; HET: BES 1PE; 2.00A {Plasmodium falciparum} PDB: 3kqz_A* 3kqx_A* 3kr5_A* 3t8w_A* Back     alignment and structure
>3ij3_A Cytosol aminopeptidase; PEPB, peptidase M17 family, IDP01962 aminopeptidase, hydrolase, manganese, metal-binding, protea structural genomics; HET: PGE PG4; 1.80A {Coxiella burnetii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 282
d1gyta2325 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-ter 1e-37
d1lama1325 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-ter 2e-31
>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal domain {Escherichia coli, PepA [TaxId: 562]} Length = 325 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Leucine aminopeptidase, C-terminal domain
domain: Leucine aminopeptidase, C-terminal domain
species: Escherichia coli, PepA [TaxId: 562]

 Score =  133 bits (335), Expect = 1e-37
 Identities = 73/281 (25%), Positives = 121/281 (43%), Gaps = 20/281 (7%)

Query: 1   MAPPKVEEYILETFKNT-PSIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLE 59
                +     +   +   ++   +I + ++ +     + AV + +    +++  +  +E
Sbjct: 20  CNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGS----QNESLMSVIE 75

Query: 60  YEPTSSSPTSSLFLVGKGVTYDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPK 119
           Y+  +S     + LVGKG+T+D+GG  IK S  M  M  D CGAA V G M+ VA LQ  
Sbjct: 76  YKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLP 135

Query: 120 VRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDAEGRFAMADVLAHMAEKAKDA 179
           + V+G LA   N  G  +Y   +V+ + +G+ + V NTDAEGR  + DVL ++     +A
Sbjct: 136 INVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEA 195

Query: 180 VNPHLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRRE 239
           V      +ATLTG   + +G   + +M N                E  GD      +  E
Sbjct: 196 V----IDVATLTGACVIALGHHITGLMANHNPLAHEL----IAASEQSGDRAWRLPLGDE 247

Query: 240 DFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG 280
                +S         + M + G    G    G FL   + 
Sbjct: 248 YQEQLESN-------FADMANIGGRPGGAITAGCFLSRFTR 281
>d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 325 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query282
d1gyta2325 Leucine aminopeptidase, C-terminal domain {Escheri 100.0
d1lama1325 Leucine aminopeptidase, C-terminal domain {Cow (Bo 100.0
d2hgaa1103 Uncharacterized protein MTH1368 {Methanobacterium 86.87
d1sota199 Stress sensor protease DegS, C-terminal domain {Es 82.64
>d1gyta2 c.56.5.3 (A:179-503) Leucine aminopeptidase, C-terminal domain {Escherichia coli, PepA [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Zn-dependent exopeptidases
family: Leucine aminopeptidase, C-terminal domain
domain: Leucine aminopeptidase, C-terminal domain
species: Escherichia coli, PepA [TaxId: 562]

Probab=100.00  E-value=4.9e-98  Score=702.81  Aligned_cols=260  Identities=28%  Similarity=0.406  Sum_probs=243.1

Q ss_pred             CCcHHHHHHHHHhhcCCC-CeEEEEecchHHHhccCChhhHhhhccCCCCCCCceEEEEEecCCCCCCCCceEeeccceE
Q psy6043           1 MAPPKVEEYILETFKNTP-SIKINIIKDPKILDKEYPLFSAVNRAASVIDRHQGRVIFLEYEPTSSSPTSSLFLVGKGVT   79 (282)
Q Consensus         1 MtP~~~a~~~~~~~~~~~-~v~v~v~~~~~~~~~gm~~~laVg~gS~~~s~~~p~~v~l~Y~~~~~~~~~~iaLVGKGiT   79 (282)
                      |||+.|++++++++++++ +++++|+++++++++||++||+|||||.    +|||||+|+|+|++...+++|+|||||||
T Consensus        20 ltP~~~a~~a~~l~~~~~~~v~v~V~~~~~l~~~Gm~~llaVg~GS~----~~p~li~l~y~~~~~~~~~~i~lVGKGit   95 (325)
T d1gyta2          20 CNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQ----NESLMSVIEYKGNASEDARPIVLVGKGLT   95 (325)
T ss_dssp             CSHHHHHHHHHHHHHHTTTTEEEEEECHHHHHHTTCHHHHHHHHTSS----SCCEEEEEEEECCCCTTCCCEEEEEEEEE
T ss_pred             cCHHHHHHHHHHHHHHcCCCeEEEEecHHHHHhCCCCCeeEEeeccC----CCCCceEEEecCcccCCCCCEEEEccceE
Confidence            799999999999999764 4899999999999999999999999985    89999999999977334678999999999


Q ss_pred             EccCCCCCCCCCCcccCccCcchHHHHHHHHHHHHhcCCCeEEEEeeeeeccCCCCCCCCCCceEEccCCeEEEecCCCc
Q psy6043          80 YDTGGADIKISGNMAGMARDKCGAAVVAGFMKAVAMLQPKVRVVGALAVVRNSCGENSYVSDEVVVSRAGKRIRVTNTDA  159 (282)
Q Consensus        80 FDsGG~slKp~~~M~~Mk~DM~GAAaV~ga~~a~a~l~~~vnV~~il~~~EN~i~~~a~~pgDVi~s~~GkTVEI~NTDA  159 (282)
                      ||||||||||+.+|.+||.||+|||+|+|+|++++++++|+||++++|+||||||++||||||||++||||||||.||||
T Consensus        96 FDTGG~slKp~~~M~~Mk~DM~GAA~v~g~~~a~a~l~~~~~v~~~~p~~EN~i~~~A~kPgDVi~s~~GkTVEI~NTDA  175 (325)
T d1gyta2          96 FDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDA  175 (325)
T ss_dssp             EECCTTSCCCSTTGGGGGGGGHHHHHHHHHHHHHHHHTCSSEEEEEEEEEEECCSTTCCCTTCEEECTTSCEEECSCTTC
T ss_pred             EeccccccccccchhhhhhhcccchhHHHHHHHHHHhCcCceEEEEEehhhcccCCCcccCCCeeeccCCcEEEeeccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceehhhhhHHHHHhhhhcCCC-ceEEeeccchhhHhhhCCCeeEEeeCCcccHHHHHHHHHHHhhhhCCCcccCcCCc
Q psy6043         160 EGRFAMADVLAHMAEKAKDAVNP-HLFTIATLTGHACLTVGEGYSIVMDNGPARQENNAVLLSETGEAMGDPFEISRIRR  238 (282)
Q Consensus       160 EGRLvLADaL~ya~~~~~~~~~p-~iIDiATLTGa~~~ALG~~~ag~~~n~~~~~~~l~~~l~~ag~~~ge~~w~~pl~~  238 (282)
                      ||||||||+|+||++     ++| .|||+|||||++++|||++++|+|+|++    +++++++++|+++||++||||+++
T Consensus       176 EGRLvLADaL~ya~~-----~~p~~iiD~ATLTGa~~~ALG~~~ag~~~n~~----~~~~~~~~a~~~~ge~~w~lPl~~  246 (325)
T d1gyta2         176 EGRLVLCDVLTYVER-----FEPEAVIDVATLTGACVIALGHHITGLMANHN----PLAHELIAASEQSGDRAWRLPLGD  246 (325)
T ss_dssp             CHHHHHHHHHHHGGG-----GCCSEEEEEECCCHHHHHHHTTTSEEEEESCH----HHHHHHHHHHHHHTCCEEECCCCH
T ss_pred             cchhhhhHHHHHHHh-----hCCceeecccccccceeeeccCceeEeeccch----HHHHHHHHHHHHhCCccccccccH
Confidence            999999999999963     688 7999999999999999999999999985    699999999999999999999854


Q ss_pred             hhhhhccCCCCchhhhCCCCCCCCCCCCCchHHHHHHhhhhC
Q psy6043         239 EDFRFFKSKCEGEDLIQSGMKSSGSNSRGHQGPGAFLIGASG  280 (282)
Q Consensus       239 ~~~~~~~~~s~~ADl~n~~~~~~~~~~~g~~~aAaFL~~~s~  280 (282)
                       +| .+.++|++|||+|++.     +.+|+|+||+||++|..
T Consensus       247 -~~-~~~~~S~~ADl~n~~~-----~~~g~~~aA~FL~~Fv~  281 (325)
T d1gyta2         247 -EY-QEQLESNFADMANIGG-----RPGGAITAGCFLSRFTR  281 (325)
T ss_dssp             -HH-HGGGCCSSSSEESCCC-----STTHHHHHHHHHHTTCT
T ss_pred             -hH-HhhcCCCccccccCCC-----CCchHHHHHHHHHHhCC
Confidence             44 4567999999999873     35799999999999973
>d1lama1 c.56.5.3 (A:160-484) Leucine aminopeptidase, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure