Psyllid ID: psy6058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-----
Protein Sequence
MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEIRRVLMDGGNIESLLFTEEEEMTKRGHNSVLNLPTFFLYDDVSGQHREEFGKLHTQ
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHcccccEEEcccEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccHHHHHHHHccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHccccccccccccccccccccccccccccHHccccccccEEEEEcccEEEEEcccEEEEEEEEEEEEEcccccEEEEEEEccc
Coil and Loop (DISEMBL)
mavplllgpvassfvdkygCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLgacgtgigtfvyapltqYWIEEYGWRGTILLLAGTFLQMCICgalmkdpewwIREQkrlqnptpshsiatksnrnsiaesaavdpglVAVEIKEIRRVLMdggniesllfteeeemtkrghnsvlnlptfflyddvsgqhreefgklhtq
Flexible Loop (DISEMBL)
MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEWWIREQKRlqnptpshsiatksnrnsiaesaavdpglvAVEIKEIRRVLMDGGNIESLLFTEEEEMTKRGHNSVLNLPTFFLYDDVSGQHREEFGKLHTQ
Low Complexity Region (SEG)
MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEIRRVLMDGGNIESLLFTEEEEMTKRGHNSVLNLPTFFLYDDVSGQHREEFGKLHTQ
Disordered region (IsUnstruct)
****LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEWWIR****************************VDPGLVAVEIKEIRRVLMDGGNIESLLFTEE****KRGHNSVLNLPTFFLYDDV**************
Disordered Region (DISOPRED)
MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKD***************************************************************************VLNLPTFFLYDDVSGQHREEFG*****
Disordered Region (DISEMBL)
MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEIRRVLMDGGNIESLLFTEEEEMTKRGHNSVLNLPTFFLYDDVSGQHREEFGKLHTQ
Disordered Region (DISPRO)
MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEWW***************************************IKEIRRVLMDGGNIESLLFTEEEEMTKRGHNSVLNLPTFFLYDDVSGQHREEFGKLHT*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEIRRVLMDGGNIESLLFTEEEEMTKRGHNSVLNLPTFFLYDDVSGQHREEFGKLHTQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	235	2.2.26 [Sep-21-2011]
Q7RTX9	510	Monocarboxylate transport	yes	N/A	0.710	0.327	0.363	2e-25
Q8K1C7	512	Monocarboxylate transport	yes	N/A	0.570	0.261	0.423	3e-25
Q6P2X9	473	Monocarboxylate transport	yes	N/A	0.617	0.306	0.372	2e-24
Q6GM59	460	Monocarboxylate transport	N/A	N/A	0.540	0.276	0.398	2e-23
Q503M4	477	Monocarboxylate transport	yes	N/A	0.689	0.339	0.351	6e-23
Q8BGC3	486	Monocarboxylate transport	no	N/A	0.676	0.327	0.319	1e-22
Q6ZSM3	486	Monocarboxylate transport	no	N/A	0.634	0.306	0.344	2e-22
Q90632	542	Monocarboxylate transport	no	N/A	0.587	0.254	0.342	2e-21
Q3MHW6	501	Monocarboxylate transport	no	N/A	0.527	0.247	0.4	8e-21
P57788	473	Monocarboxylate transport	no	N/A	0.540	0.268	0.390	3e-20

>sp|Q7RTX9|MOT14_HUMAN Monocarboxylate transporter 14 OS=Homo sapiens GN=SLC16A14 PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 65/179 (36%), Positives = 95/179 (53%), Gaps = 12/179 (6%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           M + L++GP    F++  GCR   I+GG+++  G+VLSA  AN +   +ITFG  AG G 
Sbjct: 80  MGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAAN-VHYLFITFGVAAGLGS 138

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            +AY+ AVV +  +F K+R LA  L   GTG GTF+   L +Y   EYGWR  +L+    
Sbjct: 139 GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAV 198

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNP-------TPSHSIATKSNRNSIAESAAVDPGL 172
            L +C+CGALM+     +   K   +P        P+HS  +  +      +   D GL
Sbjct: 199 SLNLCVCGALMRP----LSPGKNPNDPGEKDVRGLPAHSTESVKSTGQQGRTEEKDGGL 253

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.
Homo sapiens (taxid: 9606)

>sp|Q8K1C7|MOT14_MOUSE Monocarboxylate transporter 14 OS=Mus musculus GN=Slc16a14 PE=2 SV=1

 Score =  115 bits (288), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/137 (42%), Positives = 84/137 (61%), Gaps = 3/137 (2%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           M + L++GP    F++  GCR   I+GG+++  G+VLSA  AN +++ +ITFG  AG G 
Sbjct: 82  MGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAAN-VQSLFITFGVAAGLGS 140

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            +AY+ AVV +  +F K+R LA  L   GTG GTF+   L +Y   EYGWR  + +    
Sbjct: 141 GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMFIQGAL 200

Query: 121 FLQMCICGALMK--DPE 135
            L +C+CGALM+   PE
Sbjct: 201 SLNLCVCGALMRPLSPE 217

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.

Mus musculus (taxid: 10090)

>sp|Q6P2X9|MOT12_XENTR Monocarboxylate transporter 12 OS=Xenopus tropicalis GN=slc16a12 PE=2 SV=1

 Score =  112 bits (280), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/153 (37%), Positives = 93/153 (60%), Gaps = 8/153 (5%)

Query: 5   LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAY 64
           +L  P+ S   + + C+   ILGG+++ TG VLS + A S+E  Y+T G + G G +L Y
Sbjct: 69  MLCAPIGSYVSNHFSCQVGIILGGVLASTGLVLS-SFATSLEYLYLTLGVLTGLGFALCY 127

Query: 65  VTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124
             A+  +  +F+K++ LA  +   G+GIGTF+ AP+ Q  IE++ WRG +L+L G    +
Sbjct: 128 SPAIAMVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVSNL 187

Query: 125 CICGALMK------DPEWWIREQKRLQN-PTPS 150
           C+CGALM+      D   +  +Q++++N PT S
Sbjct: 188 CVCGALMRPITLKEDSLHYPLKQEQMENEPTQS 220

Proton-linked monocarboxylate transporter.

Xenopus tropicalis (taxid: 8364)

>sp|Q6GM59|MOT12_XENLA Monocarboxylate transporter 12 OS=Xenopus laevis GN=slc16a12 PE=2 SV=1

 Score =  108 bits (271), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/128 (39%), Positives = 81/128 (63%), Gaps = 1/128 (0%)

Query: 5   LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAY 64
           +L  P+ S   + + C+   ILGG+++ TG VLS + A S+E  Y+T G + G G +L Y
Sbjct: 69  MLCAPIGSYVSNHFSCQVGIILGGVLASTGLVLS-SFATSLEYLYLTLGVLTGLGFALCY 127

Query: 65  VTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124
             A+  +  +F+K++ LA  +   G+GIGTF+ AP+ Q  IE++ WRG +L+L G    +
Sbjct: 128 SPAIAMVGKYFEKRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVSNL 187

Query: 125 CICGALMK 132
           C+CGALM+
Sbjct: 188 CVCGALMR 195

Proton-linked monocarboxylate transporter.

Xenopus laevis (taxid: 8355)

>sp|Q503M4|MT12B_DANRE Monocarboxylate transporter 12-B OS=Danio rerio GN=slc16a12b PE=2 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 6/168 (3%)

Query: 5   LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAY 64
           +L  P+ S   ++  CR   ILGG ++  G VLS + A S+E  Y T G + G G +L Y
Sbjct: 69  MLCAPLGSLIGNQLSCRIAVILGGFLASVGLVLS-SFATSLEYLYATLGLLTGLGFALCY 127

Query: 65  VTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124
             A+  +  +F +++ LA  +   G+GIGTF+ AP+ Q  IE Y WRG +L+L G  L +
Sbjct: 128 TPAIAMVGIYFCERKALAYGIAMSGSGIGTFILAPVVQLLIEHYSWRGALLILGGFVLNL 187

Query: 125 CICGALMKDPEWWIREQKRLQNPTPS---HSIATKSNRNSIAESAAVD 169
           C+CGAL++     ++E++    P  S   +S+   +       SAA D
Sbjct: 188 CVCGALLR--PIILKEEEACPLPVDSECGYSVKPPTLNGGPTRSAASD 233

Proton-linked monocarboxylate transporter.

Danio rerio (taxid: 7955)

>sp|Q8BGC3|MOT12_MOUSE Monocarboxylate transporter 12 OS=Mus musculus GN=Slc16a12 PE=2 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 97/166 (58%), Gaps = 7/166 (4%)

Query: 5   LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAY 64
           +L  P+ S   ++  C+   +LGG+++ TGF+L  + A S++  Y++ G + G G +L Y
Sbjct: 69  MLCAPLGSVVSNQLSCQAGIMLGGLLASTGFIL-GSFATSLKHLYLSLGVLTGLGFALCY 127

Query: 65  VTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM 124
             A+  +  +F +++ LA  +   G+GIGTF+ AP+ Q  IE++ WRG +L+L G  L +
Sbjct: 128 SPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVLNL 187

Query: 125 CICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDP 170
           C+CGALM+     ++E + +  P  +H+   +S R    +++   P
Sbjct: 188 CVCGALMRPIT--LKEDRSV--PEKNHN--RESQREDCKQASPYSP 227

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.

Mus musculus (taxid: 10090)

>sp|Q6ZSM3|MOT12_HUMAN Monocarboxylate transporter 12 OS=Homo sapiens GN=SLC16A12 PE=2 SV=2

 Score =  105 bits (263), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 89/154 (57%), Gaps = 5/154 (3%)

Query: 3   VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSL 62
           V +L  P+ S   +   C+   +LGG+++ TG +LS + A S++  Y+T G + G G +L
Sbjct: 67  VTMLCAPLGSVVSNHLSCQVGIMLGGLLASTGLILS-SFATSLKHLYLTLGVLTGLGFAL 125

Query: 63  AYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFL 122
            Y  A+  +  +F +++ LA  +   G+GIGTF+ AP+ Q  IE++ WRG +L+L G  L
Sbjct: 126 CYSPAIAMVGKYFSRRKALAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVL 185

Query: 123 QMCICGALMKDPEWWIREQKRLQNPTPSHSIATK 156
            +C+CGALM+     I  ++    P  +H   T+
Sbjct: 186 NLCVCGALMRP----ITLKEDHTTPEQNHVCRTQ 215

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates.

Homo sapiens (taxid: 9606)

>sp|Q90632|MOT3_CHICK Monocarboxylate transporter 3 OS=Gallus gallus GN=SLC16A3 PE=2 SV=2

 Score =  102 bits (254), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 88/140 (62%), Gaps = 2/140 (1%)

Query: 8   GPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTA 67
           GPV S  V+++GCR + ++GG+++ +G +L++   N IE  Y+T G + G G++L +  +
Sbjct: 77  GPVCSIMVNQFGCRPVMLIGGLLASSGMILASFTTNIIEL-YLTAGVLTGLGMALNFQPS 135

Query: 68  VVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127
           ++ +  +FDK+R LA  L A G+ +     +PL Q  +E++GWRG  L++ G  L  C C
Sbjct: 136 LIMLGTYFDKRRPLANGLAAAGSPVFLSSLSPLGQVLLEKFGWRGGFLIMGGLLLNCCTC 195

Query: 128 GALMKDPEWWI-REQKRLQN 146
           GA+M+  +  + R+ ++ Q+
Sbjct: 196 GAVMRPLDAGMKRKTEKAQD 215

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates such as lactate, pyruvate, branched-chain oxo acids derived from leucine, valine and isoleucine, and the ketone bodies acetoacetate, beta-hydroxybutyrate and acetate.

Gallus gallus (taxid: 9031)

>sp|Q3MHW6|MOT1_BOVIN Monocarboxylate transporter 1 OS=Bos taurus GN=SLC16A1 PE=2 SV=2

 Score =  100 bits (249), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 75/125 (60%), Gaps = 1/125 (0%)

Query: 8   GPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTA 67
           GP++S  V+KYG R + I+GGI+SG+G + +A+  N+++  Y + G I G GL+     A
Sbjct: 73  GPISSVLVNKYGSRPVMIVGGILSGSGLI-AASFCNTVQELYFSVGVIGGLGLAFNLNPA 131

Query: 68  VVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127
           +  I  +F K+R LA  L   G+ +     APL Q +   YGWRG+ L+L G  L  C+ 
Sbjct: 132 LTMIGKYFYKRRPLANGLAMAGSPVFLSTLAPLNQAFFMIYGWRGSFLILGGLLLNCCVA 191

Query: 128 GALMK 132
           GALM+
Sbjct: 192 GALMR 196

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates such as lactate, pyruvate, branched-chain oxo acids derived from leucine, valine and isoleucine, and the ketone bodies acetoacetate, beta-hydroxybutyrate and acetate.

Bos taurus (taxid: 9913)

>sp|P57788|MOT4_CHICK Monocarboxylate transporter 4 OS=Gallus gallus GN=SLC16A3 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/128 (39%), Positives = 76/128 (59%), Gaps = 1/128 (0%)

Query: 8   GPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTA 67
           GP+ S  V+++GCR + ++GG+ +  G  + A+   SI   Y+T G I G GL+L +  +
Sbjct: 75  GPLCSVCVNRFGCRPVMLVGGLFASMGMAI-ASFCTSIVQIYLTAGVITGLGLALNFQPS 133

Query: 68  VVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127
           ++ +  +FDK+R LA  L A G+ +     +PL Q    EYGWRG  L+L G  L  C+C
Sbjct: 134 LIMLNRYFDKRRPLANGLSAAGSPVFLCALSPLGQILQHEYGWRGGFLILGGMLLNCCVC 193

Query: 128 GALMKDPE 135
           GALM+  E
Sbjct: 194 GALMRPLE 201

Proton-linked monocarboxylate transporter. Catalyzes the rapid transport across the plasma membrane of many monocarboxylates such as lactate, pyruvate, branched-chain oxo acids derived from leucine, valine and isoleucine, and the ketone bodies acetoacetate, beta-hydroxybutyrate and acetate.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
340717005	990	PREDICTED: hypothetical protein LOC10064	0.910	0.216	0.581	3e-64
383853225	988	PREDICTED: uncharacterized protein LOC10	0.910	0.216	0.572	7e-64
350408721	990	PREDICTED: hypothetical protein LOC10074	0.910	0.216	0.568	1e-63
380018450	976	PREDICTED: uncharacterized protein LOC10	0.897	0.216	0.565	3e-61
110758321	993	PREDICTED: hypothetical protein LOC41006	0.910	0.215	0.563	3e-61
307206277	858	Monocarboxylate transporter 14 [Harpegna	0.889	0.243	0.549	1e-58
322779028	925	hypothetical protein SINV_03477 [Solenop	0.872	0.221	0.55	1e-57
332028468	868	Monocarboxylate transporter 14 [Acromyrm	0.872	0.236	0.545	7e-57
193603536	830	PREDICTED: monocarboxylate transporter 1	0.710	0.201	0.656	4e-56
307167293	838	Monocarboxylate transporter 14 [Camponot	0.868	0.243	0.522	3e-55

>gi|340717005|ref|XP_003396980.1| PREDICTED: hypothetical protein LOC100645876 [Bombus terrestris]

 Score =  250 bits (639), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 132/227 (58%), Positives = 158/227 (69%), Gaps = 13/227 (5%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTI+GG+ISG GFVLS+  +NSIE  Y+TFG IAG GL
Sbjct: 347 MAVPLLSGPIMSALVDRYGCRSMTIVGGLISGIGFVLSS-FSNSIEVMYLTFGVIAGLGL 405

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVSIAYWFDKKRTLA  LGACGTGIGTF+YAP+T Y+IEEYGWRGT LLLAGT
Sbjct: 406 GLCYVTAVVSIAYWFDKKRTLAVGLGACGTGIGTFLYAPMTTYFIEEYGWRGTCLLLAGT 465

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEI 180
           F  M +CG +M+DPEWWI EQ++    TP      KS   S  + ++V P      I+E+
Sbjct: 466 FFNMIVCGTVMRDPEWWILEQEKQNGATPK-----KSTTKSEYDRSSVSPADEFPGIEEL 520

Query: 181 RRVLMDGGNIESLL----FTEEEEMTKRGH---NSVLNLPTFFLYDD 220
           RR+L  G   E LL     T E   T  G     SV+NLPTF  +++
Sbjct: 521 RRMLKSGHTPEYLLQLLSATTEGSQTANGDIRFRSVVNLPTFVKHNE 567

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853225|ref|XP_003702123.1| PREDICTED: uncharacterized protein LOC100881636 [Megachile rotundata]

 Score =  249 bits (636), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 130/227 (57%), Positives = 156/227 (68%), Gaps = 13/227 (5%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTILGG+ISG GFVLS   +N+IE  Y+TFG IAG GL
Sbjct: 346 MAVPLLSGPIMSALVDRYGCRAMTILGGLISGLGFVLSC-FSNTIEVMYLTFGVIAGLGL 404

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVSIAYWFDKKRTLA  LGACGTGIGTFVYAP+T ++IEEYGWRGT LLLAGT
Sbjct: 405 GLCYVTAVVSIAYWFDKKRTLAVGLGACGTGIGTFVYAPMTTFFIEEYGWRGTCLLLAGT 464

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEI 180
           F  M +CG +M+DPEWWI EQ++    TP  S        SIA      PG     ++E+
Sbjct: 465 FFNMIVCGTVMRDPEWWIIEQQKQNGTTPKKSTTKSECERSIASPVDEFPG-----VEEL 519

Query: 181 RRVLMDGGNIESLL----FTEEEEMTKRGH---NSVLNLPTFFLYDD 220
           RR+L  G   E LL     T ++  +  G     SV+NLPTF  +++
Sbjct: 520 RRMLKSGHTPEYLLQILSTTTDDPHSSNGDVKFRSVVNLPTFVKHNE 566

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350408721|ref|XP_003488489.1| PREDICTED: hypothetical protein LOC100749120 [Bombus impatiens]

 Score =  248 bits (634), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 129/227 (56%), Positives = 158/227 (69%), Gaps = 13/227 (5%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTI+GG+ISG GFVLS+  +NSIE  Y+TFG IAG GL
Sbjct: 347 MAVPLLSGPIMSALVDRYGCRSMTIVGGLISGIGFVLSS-FSNSIEVMYLTFGVIAGLGL 405

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVSIAYWFDKKRTLA  LGACGTGIGTF+YAP+T Y+IEEYGWRGT LLLAGT
Sbjct: 406 GLCYVTAVVSIAYWFDKKRTLAVGLGACGTGIGTFLYAPMTTYFIEEYGWRGTCLLLAGT 465

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEI 180
           F  M +CG +M+DPEWWI EQ++    TP      KS   S  + +++ P      ++E+
Sbjct: 466 FFNMIVCGTVMRDPEWWILEQEKQNGATPK-----KSTTKSECDRSSISPADEFPGVEEL 520

Query: 181 RRVLMDGGNIESLL----FTEEEEMTKRGH---NSVLNLPTFFLYDD 220
           RR+L  G   E LL     T +   T  G     SV+NLPTF  +++
Sbjct: 521 RRMLKSGHTPEYLLQILSATTDGPQTANGDIRFRSVVNLPTFVKHNE 567

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018450|ref|XP_003693141.1| PREDICTED: uncharacterized protein LOC100864907 [Apis florea]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 130/230 (56%), Positives = 162/230 (70%), Gaps = 19/230 (8%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTI+GG+ISG GF+LS   + +IE  Y+TFG IAG GL
Sbjct: 334 MAVPLLSGPIMSALVDRYGCRSMTIVGGLISGFGFILSC-FSTTIEVMYLTFGVIAGLGL 392

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVSIAYWF+KKRTLA  L ACGTGIGTFVYAP+T Y+IEEYGWRGT LLLAGT
Sbjct: 393 GLCYVTAVVSIAYWFEKKRTLAVGLSACGTGIGTFVYAPMTTYFIEEYGWRGTCLLLAGT 452

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIA-TKSNRNSIAESAAVD--PGLVAVEI 177
           F  M +CG +M+DPEWWI EQ++    TP  SI  ++ +R+SI   + VD  PG     I
Sbjct: 453 FFNMIVCGTVMRDPEWWILEQEKQNGATPKKSITKSECDRSSI---SPVDEFPG-----I 504

Query: 178 KEIRRVLMDGGNIESLL----FTEEEEMTKRGH---NSVLNLPTFFLYDD 220
           +E+R++L  G   E LL     T E+  +  G     SV+NLPTF  +++
Sbjct: 505 EELRKMLKSGHTPEYLLQILSTTTEDPQSVDGDVRFRSVVNLPTFVRHNE 554

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110758321|ref|XP_393553.3| PREDICTED: hypothetical protein LOC410067 [Apis mellifera]

 Score =  240 bits (613), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 128/227 (56%), Positives = 158/227 (69%), Gaps = 13/227 (5%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTI+GG+ISG GF+LS   + +IE  Y+TFG IAG GL
Sbjct: 351 MAVPLLSGPIMSALVDRYGCRSMTIVGGLISGFGFILSC-FSTTIEVMYLTFGVIAGLGL 409

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVSIAYWF+KKRTLA  L ACGTGIGTFVYAP+T Y+IEEYGWRGT LLLAGT
Sbjct: 410 GLCYVTAVVSIAYWFEKKRTLAVGLSACGTGIGTFVYAPMTTYFIEEYGWRGTCLLLAGT 469

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEI 180
           F  M +CG +M+DPEWWI EQ++    TP  SI TKS      + A++ P      I+E+
Sbjct: 470 FFNMIVCGTVMRDPEWWILEQEKQNGATPRKSI-TKSE----CDRASISPVDEFPGIEEL 524

Query: 181 RRVLMDGGNIESLL----FTEEEEMTKRGH---NSVLNLPTFFLYDD 220
           R++L  G   E LL     T E+  +  G     SV+NLPTF  +++
Sbjct: 525 RKMLKSGHTPEYLLQILSTTTEDPQSVDGDIRFRSVVNLPTFVRHNE 571

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206277|gb|EFN84342.1| Monocarboxylate transporter 14 [Harpegnathos saltator]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 122/222 (54%), Positives = 146/222 (65%), Gaps = 13/222 (5%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTI GG+ISG GF+LS +  NSI   Y+TFG IAG GL
Sbjct: 218 MAVPLLSGPIMSALVDRYGCRKMTIAGGLISGLGFILS-SFGNSIVIMYLTFGVIAGLGL 276

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVSIAYWFDKKRTLA  LGACGTGIGTFVYAP+T Y+IEEYGWRGT LLLAGT
Sbjct: 277 GLCYVTAVVSIAYWFDKKRTLAVGLGACGTGIGTFVYAPMTTYFIEEYGWRGTCLLLAGT 336

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEI 180
           F  M + GA+M+DPEWWI EQ++ +   P  S     +  S        PG     + E+
Sbjct: 337 FFNMIVAGAVMRDPEWWILEQRKQEQAAPKKSHCRSDDTKSEVSPPDEFPG-----VDEL 391

Query: 181 RRVLMDG-------GNIESLLFTEEEEMTKRGHNSVLNLPTF 215
           RR+L           ++ +   T +    K    SV+NLPTF
Sbjct: 392 RRLLRSEHVPEYFVQSLTTTAATVDGTKGKASFRSVVNLPTF 433

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322779028|gb|EFZ09427.1| hypothetical protein SINV_03477 [Solenopsis invicta]

 Score =  228 bits (582), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 121/220 (55%), Positives = 150/220 (68%), Gaps = 15/220 (6%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTI GG+ISG GF+LS   +N+IE  Y+TFG IAG GL
Sbjct: 290 MAVPLLSGPIMSALVDRYGCRNMTIAGGLISGFGFILS-IFSNTIEIMYLTFGVIAGLGL 348

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            + YVTAVVSIA+WFDKKRTLA  LGACGTGIGTFVYAP+T Y+IEEYGWRG  LLLAGT
Sbjct: 349 GMCYVTAVVSIAFWFDKKRTLAVGLGACGTGIGTFVYAPMTTYFIEEYGWRGACLLLAGT 408

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEI 180
           F  M + G +M+DPEWWI EQ++         +A KS+  S   S+   PG     ++E+
Sbjct: 409 FFNMIVAGTVMRDPEWWILEQRKQDQAL----LAKKSHGRSDGSSSDEFPG-----VEEL 459

Query: 181 RRVLMDGGNIESLL-----FTEEEEMTKRGHNSVLNLPTF 215
           R++L      +  L      T+  +  KR   SV+NLPTF
Sbjct: 460 RKLLRSDHAPQYFLQNLSTSTKAVDGGKRQTTSVVNLPTF 499

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028468|gb|EGI68511.1| Monocarboxylate transporter 14 [Acromyrmex echinatior]

 Score =  226 bits (575), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 120/220 (54%), Positives = 148/220 (67%), Gaps = 15/220 (6%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTI+GG+ISG GF+LS   +N+IE  Y+TFG IAG GL
Sbjct: 234 MAVPLLSGPIMSALVDRYGCRNMTIVGGLISGLGFILS-IFSNTIEIMYLTFGVIAGLGL 292

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVSIA+WFDKKRTLA  LGACGTGIGTFVYAP+T Y I+EYGWRGT LLLAGT
Sbjct: 293 GLCYVTAVVSIAFWFDKKRTLAVGLGACGTGIGTFVYAPITTYLIKEYGWRGTCLLLAGT 352

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEI 180
           F  M + G +M+DPEWWI EQ++      S     + N +S  E     PG     ++E+
Sbjct: 353 FFNMIVAGTVMRDPEWWILEQRKQDQAALSKKSYGRLNVSSSDEF----PG-----VEEL 403

Query: 181 RRVLMDGGNIESLL-----FTEEEEMTKRGHNSVLNLPTF 215
           +++       E  L      T+  +  KR   SV+NLPTF
Sbjct: 404 KKLFKSDHAPEYFLQNLSTSTKAVDGAKRQTTSVVNLPTF 443

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193603536|ref|XP_001945535.1| PREDICTED: monocarboxylate transporter 14-like [Acyrthosiphon pisum]

 Score =  223 bits (569), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 111/169 (65%), Positives = 132/169 (78%), Gaps = 2/169 (1%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPL+LGPV S+ VDK+GCR MTILGG+ISG GF++S+  A+SIE  + TFG ++G GL
Sbjct: 168 MAVPLILGPVGSALVDKFGCRKMTILGGVISGLGFIISS-FADSIEMVFFTFGFLSGLGL 226

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVSIAYWFDKKRTLAT LGACGTGIGT +YAP+TQY IEEYGWRGT+LLLAGT
Sbjct: 227 CLCYVTAVVSIAYWFDKKRTLATGLGACGTGIGTLLYAPMTQYSIEEYGWRGTVLLLAGT 286

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVD 169
           F   C+CGALM+DP+W I EQK+    T  HS A  +   +  E + VD
Sbjct: 287 FFNFCVCGALMRDPDWLIAEQKK-PAVTGGHSGAVTTKPWTDTEESIVD 334

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307167293|gb|EFN60961.1| Monocarboxylate transporter 14 [Camponotus floridanus]

 Score =  221 bits (562), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 116/222 (52%), Positives = 147/222 (66%), Gaps = 18/222 (8%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           MAVPLL GP+ S+ VD+YGCR MTILGG+ISG GF++S     +IE  Y+TFG IAG GL
Sbjct: 201 MAVPLLSGPIMSALVDRYGCRKMTILGGLISGAGFIMSM-FGRTIEVMYLTFGVIAGLGL 259

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
            L YVTAVVS+A+WFDKKRTLAT LGACGTGIGTFVYAP+T ++I EYGWRGT LLLAGT
Sbjct: 260 GLCYVTAVVSVAFWFDKKRTLATGLGACGTGIGTFVYAPMTTFFIAEYGWRGTTLLLAGT 319

Query: 121 FLQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVE---- 176
           F  M + GA+M+DPEW   EQK+            +S ++++     + P     +    
Sbjct: 320 FFNMIVAGAVMRDPEWLTWEQKQ----------DAESKKSNVRSDGMIKPSGSPSDEFPG 369

Query: 177 IKEIRRVLMDGGNIESL---LFTEEEEMTKRGHNSVLNLPTF 215
           ++E+R++L      E     L T   +  KR   SV+NLPTF
Sbjct: 370 VEELRKLLRSDRAPECFLQNLSTSTADGGKRHTTSVVNLPTF 411

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	235
FB|FBgn0033095	894	CG3409 [Drosophila melanogaste	0.876	0.230	0.513	2.6e-49
RGD|1309675	436	Slc16a14 "solute carrier famil	0.570	0.307	0.423	2.8e-27
FB|FBgn0023549	626	Mct1 "Monocarboxylate transpor	0.697	0.261	0.379	5e-27
UNIPROTKB|Q6ZWE5	485	SLC16A14 "Monocarboxylate tran	0.557	0.270	0.431	7.5e-27
UNIPROTKB|E7EMG7	489	SLC16A14 "Monocarboxylate tran	0.557	0.267	0.431	7.9e-27
MGI|MGI:1919031	512	Slc16a14 "solute carrier famil	0.570	0.261	0.423	8e-27
FB|FBgn0035173	816	CG13907 [Drosophila melanogast	0.591	0.170	0.418	9.6e-27
UNIPROTKB|Q7RTX9	510	SLC16A14 "Monocarboxylate tran	0.557	0.256	0.431	1e-26
UNIPROTKB|F1MKS0	512	SLC16A14 "Uncharacterized prot	0.672	0.308	0.4	1e-25
UNIPROTKB|E1C1Q8	511	SLC16A14 "Uncharacterized prot	0.668	0.307	0.368	1.7e-24

FB|FBgn0033095 CG3409 [Drosophila melanogaster (taxid:7227)]

 Score = 521 (188.5 bits), Expect = 2.6e-49, P = 2.6e-49
 Identities = 112/218 (51%), Positives = 144/218 (66%)

Query:     2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLS 61
             +VPLL+GP+ S+ VDKYGCR MTILGG++S  GF LS+   NSIE   +TFG I+G GL 
Sbjct:   186 SVPLLMGPIWSNLVDKYGCRKMTILGGVVSAFGFALSS-FCNSIEMLMVTFGIISGLGLG 244

Query:    62 LAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTF 121
             + YVTAVVSIA+WFDKKRT AT +GA GTGIGTFVYA LT Y IE YGWRG  L+L GT 
Sbjct:   245 IGYVTAVVSIAFWFDKKRTFATGIGASGTGIGTFVYARLTSYLIESYGWRGATLILGGTM 304

Query:   122 LQMCICGALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAA--VDPGLVAVEIKE 179
             L  C+CGALM+DP+W I E+ RL++   S S+ T SN +   E     +D G+    + +
Sbjct:   305 LNACVCGALMRDPDWLI-EENRLESR--SQSVTTFSNSSVCLEEIKKLLDTGITKEAVLD 361

Query:   180 IRRVLMDGGNIESLLFTEE--EEMTKRGHNSVLNLPTF 215
                 L+   N E+    ++  +   KR + S + LPTF
Sbjct:   362 S---LVTKNNTEANQQIDDPLDSALKR-YRSEIFLPTF 395

GO:0008028 "monocarboxylic acid transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|1309675 Slc16a14 "solute carrier family 16, member 14 (monocarboxylic acid transporter 14)" [Rattus norvegicus (taxid:10116)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 58/137 (42%), Positives = 84/137 (61%)

Query:     1 MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
             M + L++GP    F++  GCR   I+GG+++  G+VLSA  AN +++ +ITFG  AG G 
Sbjct:    82 MGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAAN-VQSLFITFGVAAGLGS 140

Query:    61 SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
              +AY+ AVV +  +F K+R LA  L   GTG GTF+   L +Y   EYGWR  + +    
Sbjct:   141 GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMFIQGAL 200

Query:   121 FLQMCICGALMK--DPE 135
              L +C+CGALM+   PE
Sbjct:   201 SLNLCVCGALMRPLSPE 217

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0023549 Mct1 "Monocarboxylate transporter 1" [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 5.0e-27, P = 5.0e-27
 Identities = 66/174 (37%), Positives = 101/174 (58%)

Query:     8 GPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTA 67
             GP++SSFV++YGCR +TI G I++ +  ++S   A ++    IT G   G G  L Y+ A
Sbjct:    88 GPISSSFVNRYGCRAVTIAGSILAASCIIVSM-FAQNVLTLIITIGFGTGLGFGLIYLPA 146

Query:    68 VVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127
             +VS+  +F+ KR+LAT +  CG+G GTFV+APLT++ I  YGWRG +L++ G  L   I 
Sbjct:   147 IVSVTQYFEAKRSLATGIAVCGSGFGTFVFAPLTEFLIGNYGWRGAMLIIGGIVLNCIIF 206

Query:   128 GALMKDPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKEIR 181
             GA+ +  E        L+ P P     T S      +SA +D    A E++ ++
Sbjct:   207 GAMFRPLE--------LEAP-PQTPPNTPSTPKLAKKSAIIDQNTTAAELEPLK 251

GO:0008028 "monocarboxylic acid transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q6ZWE5 SLC16A14 "Monocarboxylate transporter 14" [Homo sapiens (taxid:9606)]

 Score = 305 (112.4 bits), Expect = 7.5e-27, P = 7.5e-27
 Identities = 57/132 (43%), Positives = 81/132 (61%)

Query:     1 MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
             M + L++GP    F++  GCR   I+GG+++  G+VLSA  AN +   +ITFG  AG G 
Sbjct:    80 MGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAAN-VHYLFITFGVAAGLGS 138

Query:    61 SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
              +AY+ AVV +  +F K+R LA  L   GTG GTF+   L +Y   EYGWR  +L+    
Sbjct:   139 GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAV 198

Query:   121 FLQMCICGALMK 132
              L +C+CGALM+
Sbjct:   199 SLNLCVCGALMR 210

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|E7EMG7 SLC16A14 "Monocarboxylate transporter 14" [Homo sapiens (taxid:9606)]

 Score = 305 (112.4 bits), Expect = 7.9e-27, P = 7.9e-27
 Identities = 57/132 (43%), Positives = 81/132 (61%)

Query:     1 MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
             M + L++GP    F++  GCR   I+GG+++  G+VLSA  AN +   +ITFG  AG G 
Sbjct:    80 MGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAAN-VHYLFITFGVAAGLGS 138

Query:    61 SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
              +AY+ AVV +  +F K+R LA  L   GTG GTF+   L +Y   EYGWR  +L+    
Sbjct:   139 GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAV 198

Query:   121 FLQMCICGALMK 132
              L +C+CGALM+
Sbjct:   199 SLNLCVCGALMR 210

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

MGI|MGI:1919031 Slc16a14 "solute carrier family 16 (monocarboxylic acid transporters), member 14" [Mus musculus (taxid:10090)]

 Score = 306 (112.8 bits), Expect = 8.0e-27, P = 8.0e-27
 Identities = 58/137 (42%), Positives = 84/137 (61%)

Query:     1 MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
             M + L++GP    F++  GCR   I+GG+++  G+VLSA  AN +++ +ITFG  AG G 
Sbjct:    82 MGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAAN-VQSLFITFGVAAGLGS 140

Query:    61 SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
              +AY+ AVV +  +F K+R LA  L   GTG GTF+   L +Y   EYGWR  + +    
Sbjct:   141 GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMFIQGAL 200

Query:   121 FLQMCICGALMK--DPE 135
              L +C+CGALM+   PE
Sbjct:   201 SLNLCVCGALMRPLSPE 217

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0035173 CG13907 [Drosophila melanogaster (taxid:7227)]

 Score = 311 (114.5 bits), Expect = 9.6e-27, P = 9.6e-27
 Identities = 59/141 (41%), Positives = 90/141 (63%)

Query:     3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSL 62
             V L  GP+ S+  +KYGCR + I G II+   FVLS T + ++     T+G + G G  +
Sbjct:   126 VYLSAGPIVSALANKYGCRAVCIAGSIIACIAFVLS-TFSTNVSMLMATYGFMGGFGFGM 184

Query:    63 AYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFL 122
              Y+ AVV++ Y+F+ KR+LAT +  CG+G GTF +APL  Y +EEYGW+  +L+ AG  L
Sbjct:   185 IYLPAVVAVGYYFETKRSLATGIAVCGSGFGTFAFAPLATYLLEEYGWKNALLIFAGLIL 244

Query:   123 QMCICGALMKDPEWWIREQKR 143
                I GA+M+ P  + +++K+
Sbjct:   245 NCAIFGAMMR-PLTYPKKKKQ 264

GO:0015355 "secondary active monocarboxylate transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|Q7RTX9 SLC16A14 "Monocarboxylate transporter 14" [Homo sapiens (taxid:9606)]

 Score = 305 (112.4 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 57/132 (43%), Positives = 81/132 (61%)

Query:     1 MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
             M + L++GP    F++  GCR   I+GG+++  G+VLSA  AN +   +ITFG  AG G 
Sbjct:    80 MGITLIVGPFIGLFINTCGCRQTAIIGGLVNSLGWVLSAYAAN-VHYLFITFGVAAGLGS 138

Query:    61 SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
              +AY+ AVV +  +F K+R LA  L   GTG GTF+   L +Y   EYGWR  +L+    
Sbjct:   139 GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMLIQGAV 198

Query:   121 FLQMCICGALMK 132
              L +C+CGALM+
Sbjct:   199 SLNLCVCGALMR 210

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1MKS0 SLC16A14 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 296 (109.3 bits), Expect = 1.0e-25, P = 1.0e-25
 Identities = 66/165 (40%), Positives = 94/165 (56%)

Query:     1 MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
             M V L++GP    F++  GCR   I+GG+++  G+VLSA   N +   +ITFG  AG G 
Sbjct:    80 MGVTLIVGPFIGLFINTCGCRRTAIIGGLLNSLGWVLSAYAVN-VYYLFITFGLAAGFGS 138

Query:    61 SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
              +AY+ AVV +  +F K+R LA  L   GTG GTF+   L +Y   EYGWR  + +    
Sbjct:   139 GMAYLPAVVMVGRYFQKRRALAQGLSTTGTGFGTFLMTVLLKYLCAEYGWRNAMFIQGAV 198

Query:   121 FLQMCICGALMK--DP--EWWIREQKRLQNPTPSHSIATKSNRNS 161
              L +C+CGALM+   P  +    E K   +  P+HS  T+S R+S
Sbjct:   199 SLNLCVCGALMRPLSPGMDGDGPEGKAPHHVLPAHS--TESIRSS 241

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C1Q8 SLC16A14 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 285 (105.4 bits), Expect = 1.7e-24, P = 1.7e-24
 Identities = 60/163 (36%), Positives = 88/163 (53%)

Query:     1 MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
             M + L++GP    F+   GCR   I+GGI++  G++LSA  +N +   ++TFG  AG G 
Sbjct:    81 MGITLIVGPFIGLFITMCGCRKTAIIGGILNALGWILSAYASN-VHYLFLTFGVTAGIGS 139

Query:    61 SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
              + Y+ AVV +  +F K+R LA  L   GTG G F+   L +Y   E+GWR  + +    
Sbjct:   140 GMVYLPAVVMVGQYFHKRRALAQGLSTTGTGFGAFLMTALLKYLCREFGWRNAMFIQGAI 199

Query:   121 FLQMCICGALMK--DPEWWIREQKRLQNPTP--SHSIAT-KSN 158
              L +C+CGALM+   P+    +     N     SHS  T KSN
Sbjct:   200 CLNLCVCGALMRPLSPKVLNEKSNSEDNQAKALSHSAETIKSN 242

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	235
TIGR00892	455	TIGR00892, 2A0113, monocarboxylate transporter 1	1e-30
TIGR00890	377	TIGR00890, 2A0111, oxalate/formate antiporter fami	8e-16
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	8e-14
pfam07690	346	pfam07690, MFS_1, Major Facilitator Superfamily	1e-12
TIGR04259	405	TIGR04259, oxa_formateAnti, oxalate/formate antipo	2e-11
TIGR00895	398	TIGR00895, 2A0115, benzoate transport	4e-05
cd06174	352	cd06174, MFS, The Major Facilitator Superfamily (M	1e-04
TIGR00880	141	TIGR00880, 2_A_01_02, Multidrug resistance protein	1e-04
COG0477	338	COG0477, ProP, Permeases of the major facilitator	0.003

>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1

 Score =  117 bits (295), Expect = 1e-30
 Identities = 50/143 (34%), Positives = 82/143 (57%), Gaps = 1/143 (0%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
           +AV    GP++S  V+++GCR + I GG+++  G +L A+ ++++   Y+T G I G GL
Sbjct: 64  LAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMIL-ASFSSNVIELYLTAGFITGLGL 122

Query: 61  SLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT 120
           +  +  ++  +  +F ++R LA  L   G+ +     APL QY  E +GWRG+ L+L G 
Sbjct: 123 AFNFQPSLTMLGKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGL 182

Query: 121 FLQMCICGALMKDPEWWIREQKR 143
            L  C+CGALM+      R  K 
Sbjct: 183 LLHCCVCGALMRPVGPSQRVSKS 205

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 455

>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter

 Score = 75.2 bits (185), Expect = 8e-16
 Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 3/128 (2%)

Query: 9   PVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAV 68
           PV     DK+G R + +LGGI+ G GF   A +A+S+ A Y+T+G +A  G+ +AY  A+
Sbjct: 56  PVGGLLADKFGPRAVAMLGGILYGLGFTFYA-IADSLAALYLTYG-LASAGVGIAYGIAL 113

Query: 69  VSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG 128
            +   WF  KR LA+ +   G G+G+F+ +PL    I   G     + +   FL + + G
Sbjct: 114 NTAVKWFPDKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLG 173

Query: 129 A-LMKDPE 135
           A L+  P 
Sbjct: 174 AFLIGYPP 181

This subfamily belongs to the major facilitator family. Members include the oxalate/formate antiporter of Oxalobacter formigenes, where one substrate is decarboxylated in the cytosol into the other to consume a proton and drive an ion gradient [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 377

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 69.3 bits (170), Expect = 8e-14
 Identities = 34/132 (25%), Positives = 53/132 (40%), Gaps = 3/132 (2%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
                L   +A    D++G R + +LG ++   G +L A  ++      +    + G G 
Sbjct: 44  SLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSL--WLLLVGRFLLGLGG 101

Query: 61  SLAYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG 119
              Y  A   IA WF  K R  A  L + G G+G  +   L     E  GWR   L+LA 
Sbjct: 102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAI 161

Query: 120 TFLQMCICGALM 131
             L + +    +
Sbjct: 162 LGLLLALLLLFL 173

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 32/131 (24%), Positives = 53/131 (40%), Gaps = 3/131 (2%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
                L  P+A    D++G R + ++G ++   G +L    ++      +    + G G 
Sbjct: 42  SLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSL--WLLLVLRVLQGLGG 99

Query: 61  SLAYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG 119
              +  A   IA WF  + R  A  L + G G+G  +   L       +GWR   L+LA 
Sbjct: 100 GALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWRAAFLILAI 159

Query: 120 TFLQMCICGAL 130
             L   +  AL
Sbjct: 160 LALLAAVLAAL 170

Length = 346

>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 2/109 (1%)

Query: 7   LGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVT 66
           L P+   FVDKYG R + + GGI+ G G+VL+A  A+S+ A Y     +AG G    Y T
Sbjct: 54  LVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNA-YADSLPALYAAA-VVAGIGAGAVYGT 111

Query: 67  AVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTIL 115
            V +   WF  KR LA  L A G G G  +        I+  G++   +
Sbjct: 112 CVGNALKWFPDKRGLAAGLTAAGFGAGAALTVVPIAAMIKVSGYQAAFM 160

This model represents a subgroup of the more broadly defined model TIGR00890, which in turn belongs to the Major Facilitator transporter family. Seed members for this family include the known oxalate/formate antiporter of Oxalobacter formigenes, as well as transporter subunits co-clustered with the two genes of a system that decarboxylates oxalate into formate. In many of these cassettes, two subunits are found rather than one, suggesting the antiporter is sometimes homodimeric, sometimes heterodimeric. Length = 405

>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 45/188 (23%), Positives = 77/188 (40%), Gaps = 16/188 (8%)

Query: 5   LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAY 64
           L  GP+A    D+ G R + +L  I+  + F L   +A ++  Q +    +AG GL    
Sbjct: 70  LFFGPLA----DRIGRRRV-LLWSILLFSVFTLLCALATNVT-QLLILRFLAGLGLGGLM 123

Query: 65  --VTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFL 122
             + A+VS  Y   + R  A  L  CG  IG  V   L  + I  +GWR   L   G   
Sbjct: 124 PNLNALVS-EYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWR--SLFYVGGIA 180

Query: 123 QMCICGALMK---DPEWWIREQKRLQNPTPSHSIATKSNRNSIAESAAVDPGLVAVEIKE 179
            + +   LM+   +   ++  ++        ++IA +      A+SA  +        + 
Sbjct: 181 PLLLLLLLMRFLPESIDFLVSKRPETVRRIVNAIAPQMQAE--AQSALPEQKATQGTKRS 238

Query: 180 IRRVLMDG 187
           + + L  G
Sbjct: 239 VFKALFQG 246

[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 398

>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 25/119 (21%), Positives = 48/119 (40%), Gaps = 2/119 (1%)

Query: 5   LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAY 64
           +L   +     D+ G R + +L G++     +L   +A S+ A  +    + G GL  A+
Sbjct: 225 ILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLALAPSL-ALLLVALLLLGFGLGFAF 283

Query: 65  VTAVVSIA-YWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFL 122
              +   +     + R  A+ L      +G  +   L    ++  G+ G  L+LA   L
Sbjct: 284 PALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352

>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 28/118 (23%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 2   AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLS 61
              L+  P++    D++G + + ++G  I      + A  +++I    I    + G G +
Sbjct: 9   LGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFAL-SSNITVLIIAR-FLQGFGAA 66

Query: 62  LAYVTAVVSIAYWFD-KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLA 118
            A V     IA  +  ++R +A  L + G  +G  +  PL     +  GWR   L LA
Sbjct: 67  FALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLA 124

Length = 141

>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 28/133 (21%), Positives = 45/133 (33%), Gaps = 2/133 (1%)

Query: 1   MAVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL 60
                +   +A    D+YG R + I+G ++   G +L A   N   A  +    + G G 
Sbjct: 49  FLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGG 108

Query: 61  SLAYVTAVVSIAYWFDK--KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLA 118
                 A   ++ WF +  +R LA  L   G G       PL    +      G      
Sbjct: 109 GGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168

Query: 119 GTFLQMCICGALM 131
              L   +   L+
Sbjct: 169 LAALLGLLLLILV 181

Length = 338

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	235
PRK10642	490	proline/glycine betaine transporter; Provisional	99.75
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.75
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.74
KOG0569|consensus	485		99.71
KOG0255|consensus	521		99.71
PRK09952	438	shikimate transporter; Provisional	99.69
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	99.69
KOG2504|consensus	509		99.68
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.68
TIGR00898	505	2A0119 cation transport protein.	99.68
PRK14995	495	methyl viologen resistance protein SmvA; Provision	99.68
PRK03545	390	putative arabinose transporter; Provisional	99.67
TIGR00893	399	2A0114 d-galactonate transporter.	99.67
PRK10406	432	alpha-ketoglutarate transporter; Provisional	99.66
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	99.66
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.66
PRK10213	394	nepI ribonucleoside transporter; Reviewed	99.66
PRK15403	413	multidrug efflux system protein MdtM; Provisional	99.66
PRK09705	393	cynX putative cyanate transporter; Provisional	99.66
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.66
KOG1330|consensus	493		99.66
TIGR00900	365	2A0121 H+ Antiporter protein.	99.66
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	99.66
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	99.65
TIGR00891	405	2A0112 putative sialic acid transporter.	99.65
KOG2532|consensus	466		99.65
PRK12307	426	putative sialic acid transporter; Provisional	99.64
KOG3764|consensus	464		99.63
KOG0254|consensus	513		99.63
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	99.63
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	99.63
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	99.63
PRK10091	382	MFS transport protein AraJ; Provisional	99.63
PRK11663	434	regulatory protein UhpC; Provisional	99.63
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	99.61
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.61
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	99.61
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	99.61
PRK15075	434	citrate-proton symporter; Provisional	99.61
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.6
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	99.6
PRK03699	394	putative transporter; Provisional	99.59
TIGR00895	398	2A0115 benzoate transport.	99.59
PRK10473	392	multidrug efflux system protein MdtL; Provisional	99.59
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.58
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.58
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.58
PRK10504	471	putative transporter; Provisional	99.58
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	99.58
PRK03893	496	putative sialic acid transporter; Provisional	99.57
PRK11646	400	multidrug resistance protein MdtH; Provisional	99.56
KOG2533|consensus	495		99.55
PRK11043	401	putative transporter; Provisional	99.55
KOG2615|consensus	451		99.55
PRK11652	394	emrD multidrug resistance protein D; Provisional	99.55
PRK10207	489	dipeptide/tripeptide permease B; Provisional	99.55
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.54
PTZ00207	591	hypothetical protein; Provisional	99.54
PRK10642	490	proline/glycine betaine transporter; Provisional	99.53
PRK11195	393	lysophospholipid transporter LplT; Provisional	99.53
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	99.53
PLN00028	476	nitrate transmembrane transporter; Provisional	99.53
PRK09874	408	drug efflux system protein MdtG; Provisional	99.52
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.52
PRK05122	399	major facilitator superfamily transporter; Provisi	99.52
PRK12382	392	putative transporter; Provisional	99.51
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	99.5
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	99.5
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	99.48
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.48
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.48
PRK10054	395	putative transporter; Provisional	99.48
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	99.47
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.47
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	99.46
PRK09584	500	tppB putative tripeptide transporter permease; Rev	99.44
TIGR00896	355	CynX cyanate transporter. This family of proteins	99.43
PRK10133	438	L-fucose transporter; Provisional	99.43
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.43
PRK15462	493	dipeptide/tripeptide permease D; Provisional	99.42
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	99.42
PRK10489	417	enterobactin exporter EntS; Provisional	99.42
PRK05122	399	major facilitator superfamily transporter; Provisi	99.41
PRK15011	393	sugar efflux transporter B; Provisional	99.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.4
PRK03633	381	putative MFS family transporter protein; Provision	99.39
TIGR00805	633	oat sodium-independent organic anion transporter.	99.39
PRK12382	392	putative transporter; Provisional	99.39
PRK11010	491	ampG muropeptide transporter; Validated	99.37
PRK09528	420	lacY galactoside permease; Reviewed	99.37
KOG0253|consensus	528		99.36
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	99.36
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.34
PRK11902	402	ampG muropeptide transporter; Reviewed	99.33
TIGR00901	356	2A0125 AmpG-related permease.	99.32
PRK15011	393	sugar efflux transporter B; Provisional	99.31
PRK09874	408	drug efflux system protein MdtG; Provisional	99.31
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	99.3
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	99.3
PRK03893	496	putative sialic acid transporter; Provisional	99.29
KOG0252|consensus	538		99.29
PRK10489	417	enterobactin exporter EntS; Provisional	99.24
PRK03545	390	putative arabinose transporter; Provisional	99.23
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	99.22
PRK03699	394	putative transporter; Provisional	99.21
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.21
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	99.2
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	99.2
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.2
TIGR00892	455	2A0113 monocarboxylate transporter 1.	99.19
PRK09952	438	shikimate transporter; Provisional	99.18
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.18
TIGR00897	402	2A0118 polyol permease family. This family of prot	99.18
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	99.18
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	99.14
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.12
PRK09528	420	lacY galactoside permease; Reviewed	99.12
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	99.12
PRK03633	381	putative MFS family transporter protein; Provision	99.11
TIGR00898	505	2A0119 cation transport protein.	99.09
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	99.09
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.08
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.07
PLN00028	476	nitrate transmembrane transporter; Provisional	99.06
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	99.06
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	99.05
PRK12307	426	putative sialic acid transporter; Provisional	99.05
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	99.05
PRK09705	393	cynX putative cyanate transporter; Provisional	99.05
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	99.04
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	99.04
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	99.02
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	99.02
TIGR00893	399	2A0114 d-galactonate transporter.	99.01
PRK11010	491	ampG muropeptide transporter; Validated	99.01
TIGR00891	405	2A0112 putative sialic acid transporter.	99.01
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	99.0
PRK10504	471	putative transporter; Provisional	98.99
PRK11663	434	regulatory protein UhpC; Provisional	98.99
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	98.97
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	98.94
PRK10054	395	putative transporter; Provisional	98.93
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	98.92
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.91
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	98.91
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.91
TIGR00900	365	2A0121 H+ Antiporter protein.	98.91
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	98.9
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	98.9
PRK15075	434	citrate-proton symporter; Provisional	98.9
PRK10091	382	MFS transport protein AraJ; Provisional	98.89
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	98.89
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.89
PRK11902	402	ampG muropeptide transporter; Reviewed	98.85
PRK10133	438	L-fucose transporter; Provisional	98.85
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	98.84
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.83
PRK10213	394	nepI ribonucleoside transporter; Reviewed	98.82
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	98.82
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	98.82
KOG0253|consensus	528		98.77
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.75
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	98.75
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	98.75
KOG3762|consensus	618		98.74
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	98.74
TIGR00895	398	2A0115 benzoate transport.	98.73
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	98.72
PRK11646	400	multidrug resistance protein MdtH; Provisional	98.71
PRK09848	448	glucuronide transporter; Provisional	98.7
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	98.7
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	98.66
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	98.65
COG2270	438	Permeases of the major facilitator superfamily [Ge	98.65
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.63
KOG4686|consensus	459		98.62
PRK09669	444	putative symporter YagG; Provisional	98.61
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	98.61
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	98.6
PRK10429	473	melibiose:sodium symporter; Provisional	98.59
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	98.59
PRK09584	500	tppB putative tripeptide transporter permease; Rev	98.58
PRK14995	495	methyl viologen resistance protein SmvA; Provision	98.58
PRK11195	393	lysophospholipid transporter LplT; Provisional	98.58
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	98.55
PRK11043	401	putative transporter; Provisional	98.55
TIGR00896	355	CynX cyanate transporter. This family of proteins	98.54
KOG0569|consensus	485		98.54
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	98.53
KOG2816|consensus	463		98.51
COG0477	338	ProP Permeases of the major facilitator superfamil	98.51
PRK09669	444	putative symporter YagG; Provisional	98.5
KOG2504|consensus	509		98.5
PRK10473	392	multidrug efflux system protein MdtL; Provisional	98.5
KOG3764|consensus	464		98.46
PRK10207	489	dipeptide/tripeptide permease B; Provisional	98.44
PF13347	428	MFS_2: MFS/sugar transport protein	98.39
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	98.36
KOG0252|consensus	538		98.36
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.34
TIGR00901	356	2A0125 AmpG-related permease.	98.32
KOG2325|consensus	488		98.32
PRK10429	473	melibiose:sodium symporter; Provisional	98.31
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	98.31
PRK11652	394	emrD multidrug resistance protein D; Provisional	98.3
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	98.28
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	98.28
TIGR00788	468	fbt folate/biopterin transporter. The only functio	98.26
PF13347	428	MFS_2: MFS/sugar transport protein	98.22
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	98.2
PRK11462	460	putative transporter; Provisional	98.17
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	98.15
KOG0254|consensus	513		98.11
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	98.07
PRK11462	460	putative transporter; Provisional	98.05
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	98.05
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	98.02
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	98.01
COG2211	467	MelB Na+/melibiose symporter and related transport	98.0
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	97.92
COG2211	467	MelB Na+/melibiose symporter and related transport	97.87
KOG0255|consensus	521		97.86
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	97.85
KOG2532|consensus	466		97.84
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.83
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.82
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	97.79
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	97.79
KOG4686|consensus	459		97.69
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	97.64
PRK09848	448	glucuronide transporter; Provisional	97.55
KOG2563|consensus	480		97.55
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	97.54
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	97.53
PTZ00207	591	hypothetical protein; Provisional	97.45
KOG2533|consensus	495		97.42
PF03137	539	OATP: Organic Anion Transporter Polypeptide (OATP)	97.42
KOG3626|consensus	735		97.35
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	97.27
PRK15462	493	dipeptide/tripeptide permease D; Provisional	96.98
PRK03612	521	spermidine synthase; Provisional	96.97
KOG3098|consensus	461		96.95
KOG4332|consensus	454		96.42
COG2270	438	Permeases of the major facilitator superfamily [Ge	96.36
PF06963	432	FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi	96.25
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	96.21
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.01
KOG1237|consensus	571		95.93
KOG0637|consensus	498		95.78
KOG2816|consensus	463		95.73
KOG2615|consensus	451		95.7
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	95.58
KOG2563|consensus	480		95.44
KOG3098|consensus	461		95.35
PF02487	402	CLN3: CLN3 protein; InterPro: IPR003492 Batten's d	94.37
PF12832	77	MFS_1_like: MFS_1 like family	94.15
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.51
KOG1330|consensus	493		92.81
PF13000	544	Acatn: Acetyl-coenzyme A transporter 1; InterPro:	90.18
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	88.31
KOG3574|consensus	510		88.03
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	87.31
KOG2325|consensus	488		86.44
TIGR00939	437	2a57 Equilibrative Nucleoside Transporter (ENT).	85.06
KOG3097|consensus	390		84.63
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	84.13
KOG3810|consensus	433		81.78
COG5336	116	Uncharacterized protein conserved in bacteria [Fun	80.41

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.75  E-value=3.2e-17  Score=141.93  Aligned_cols=134  Identities=17%  Similarity=0.152  Sum_probs=107.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWF   75 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~   75 (235)
                      ++.++++++|+++||+|||+++.++.++++++.++++ ++++++.       +++++|++.|++.|..++....+++|++
T Consensus        69 ~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a-~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~  147 (490)
T PRK10642         69 IRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIG-LIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYS  147 (490)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhC
Confidence            4568999999999999999999999999999999999 9998864       3467799999999999999999999999


Q ss_pred             cc-chhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHHHHHHHh-hccCCchh
Q psy6058          76 DK-KRTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQMCICGA-LMKDPEWW  137 (235)
Q Consensus        76 ~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~~~~~~~-~~~~~~~~  137 (235)
                      |+ +||++.++...+..+|..+++.+...+.        ..+|||+.|++.+++.++..++.. ..|+|++.
T Consensus       148 p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~  219 (490)
T PRK10642        148 PDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQ  219 (490)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHH
Confidence            76 5999999998888888888876654443        357999999986654444333322 33444443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.75  E-value=1.3e-17  Score=148.96  Aligned_cols=145  Identities=14%  Similarity=0.094  Sum_probs=119.9

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      ++++++++++|+++||+|||+++++++++.+++.++.+ ++++++.+ +++|++.|++.|+..+....++++++|++ |+
T Consensus       213 lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~a-fa~s~~~l-lv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg  290 (742)
T TIGR01299       213 LGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSS-FVQGYGFF-LFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRG  290 (742)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            35678999999999999999999999999999999988 88898866 56699999999999999999999999875 99


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhh-------------CcHHHHHHHHHHHHHHHHH-HhhccCCchhHhhhhhcCC
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEY-------------GWRGTILLLAGTFLQMCIC-GALMKDPEWWIREQKRLQN  146 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~-------------gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  146 (235)
                      +..+++.+++.+|.++++.++..+...+             +||+.+++.++..++.+++ .+++++|+|+..+++.+++
T Consensus       291 ~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA  370 (742)
T TIGR01299       291 EHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEA  370 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHH
Confidence            9999999999999999998877766533             5888888776655544444 4567888998776665555


Q ss_pred             CC
Q psy6058         147 PT  148 (235)
Q Consensus       147 ~~  148 (235)
                      .+
T Consensus       371 ~~  372 (742)
T TIGR01299       371 WM  372 (742)
T ss_pred             HH
Confidence            44

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.74  E-value=4.5e-17  Score=141.40  Aligned_cols=139  Identities=18%  Similarity=0.114  Sum_probs=113.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      ++.++++++|+++||+|||+++.++.++..++.++.+ ++.+      ++.+ ++.|++.|++.|...+....+++|++|
T Consensus        68 g~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~-~~~r~l~G~~~g~~~~~~~~~~~e~~p  145 (502)
T TIGR00887        68 GTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG-LSPGSSPKSVMATL-CFWRFWLGVGIGGDYPLSAIITSEFAT  145 (502)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH-HccCcccchHHHHH-HHHHHHHHHHHhhhhHHHHHHHHHhcC
Confidence            4678999999999999999999999999999988888 7654      4444 667999999999999999999999998


Q ss_pred             cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHh-----------------------hhCcHHHHHHHHHHHHHHHHH-Hhhc
Q psy6058          77 KK-RTLATSLGACGTGIGTFVYAPLTQYWIE-----------------------EYGWRGTILLLAGTFLQMCIC-GALM  131 (235)
Q Consensus        77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~-----------------------~~gw~~~~~~~~~~~~~~~~~-~~~~  131 (235)
                      ++ ||++.++.+.+..+|..+++.+...+..                       .++||+.+.+.++..++..+. .+++
T Consensus       146 ~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lp  225 (502)
T TIGR00887       146 KKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIP  225 (502)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCC
Confidence            76 9999999999999999999888765532                       247999998766655544443 4567


Q ss_pred             cCCchhHhhhhh
Q psy6058         132 KDPEWWIREQKR  143 (235)
Q Consensus       132 ~~~~~~~~~~~~  143 (235)
                      |+|+|+..++++
T Consensus       226 ESpr~l~~~~~~  237 (502)
T TIGR00887       226 ETPRYTADVAKD  237 (502)
T ss_pred             CCHHHHHHhCcc
Confidence            889998766554

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>KOG0569|consensus

Probab=99.71  E-value=1e-16  Score=135.84  Aligned_cols=155  Identities=14%  Similarity=0.082  Sum_probs=126.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      +.++|+++.++++||+|||..++++.++..++.+++. ++   +++. +++.+|++.|+..|......+.++.|..|++ 
T Consensus        72 G~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~-~s~~~~~~e-~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~  149 (485)
T KOG0569|consen   72 GGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMG-LSKSAPSFE-MLILGRLIVGLACGLSTGLVPMYLTEISPKNL  149 (485)
T ss_pred             HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH-HHHHhhhHH-HHHHHHHHHHHHhHHHHHHHHHHHhhcChhhh
Confidence            5678999999999999999999999998888877776 54   5555 4588899999999999999999999999998 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHH-HHHH-hhhCcHHHHHHHHHHHHHHHHH-HhhccCCchhHh-hhhhcCCCCCCCccc
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLT-QYWI-EEYGWRGTILLLAGTFLQMCIC-GALMKDPEWWIR-EQKRLQNPTPSHSIA  154 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~-~~~~-~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~  154 (235)
                      ||....+.+.+..+|..++..++ ..+. +...|++.+.+..+..++.++. .+++|+|+|+.. +++++++++    .+
T Consensus       150 RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~----sl  225 (485)
T KOG0569|consen  150 RGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARK----AL  225 (485)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHH----HH
Confidence            99999999999999999986664 3333 4557999888877765554444 667899999987 677777777    77


Q ss_pred             cccCcCccc
Q psy6058         155 TKSNRNSIA  163 (235)
Q Consensus       155 ~~~~~~~~~  163 (235)
                      +.+++.+++
T Consensus       226 ~~y~G~~~~  234 (485)
T KOG0569|consen  226 KFYRGKEDV  234 (485)
T ss_pred             HHHhCCCcc
Confidence            777776654

>KOG0255|consensus

Probab=99.71  E-value=5.4e-17  Score=141.50  Aligned_cols=142  Identities=15%  Similarity=0.113  Sum_probs=123.9

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      .+.++|++++|+++||+|||++++++.++..++.+..+ +++|++.+ ++.|++.|++.+........+++|++++ +|+
T Consensus       129 ~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a-~a~~~~~~-~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~  206 (521)
T KOG0255|consen  129 LGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA-FAPNYWMF-LIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRG  206 (521)
T ss_pred             HHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH-HhCcHHHH-HHHHHHHHhhccchhHHhHhhheeecCcchhh
Confidence            46789999999999999999999999999999999999 99999966 6669999999999999999999998755 599


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc-cCCchhHhhhhhcCCCC
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM-KDPEWWIREQKRLQNPT  148 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  148 (235)
                      .+..+ ......++.+++.+++++..  +||+.+++..+..++.+++.+++ |+|+|+..+++.+++.+
T Consensus       207 ~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~  272 (521)
T KOG0255|consen  207 LALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIK  272 (521)
T ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHH
Confidence            99999 77788888889999899887  89999999888777776666655 89999888777665554

>PRK09952 shikimate transporter; Provisional

Probab=99.69  E-value=6.7e-16  Score=131.90  Aligned_cols=119  Identities=22%  Similarity=0.249  Sum_probs=101.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      ..+++++.|+++||+|||++++++.+++++++++++ +++++..       ++++.|++.|++.|..++....++.|++|
T Consensus        77 ~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p  155 (438)
T PRK09952         77 RPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIG-LLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAP  155 (438)
T ss_pred             HhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCC
Confidence            457788899999999999999999999999999999 8988763       34667999999999999999999999997


Q ss_pred             cc-hhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHH
Q psy6058          77 KK-RTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQ  123 (235)
Q Consensus        77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~  123 (235)
                      ++ |++..+..+.+..+|..+++.+...+.        +.+|||..|++.++..++
T Consensus       156 ~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        156 KNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            75 999999999999999988877766654        357999999887665443

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=99.69  E-value=7.1e-16  Score=130.74  Aligned_cols=123  Identities=15%  Similarity=0.147  Sum_probs=107.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ++.+++++.|++.||+|||+++..+.++..++.++.+ ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        55 ~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~  132 (412)
T TIGR02332        55 AYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATM-FATGPESL-YLLRILVGIAEAGFLPGILLYLTFWFPAYFRAR  132 (412)
T ss_pred             HHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HhcCHHHH-HHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHH
Confidence            4678899999999999999999999999999999999 89999877 55699999999998888888999999875 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHh------hhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIE------EYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~------~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +.++++.+..+|..+++.+++++.+      ..|||+.|++.++..++..++
T Consensus       133 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~  184 (412)
T TIGR02332       133 ANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVM  184 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999988864      369999999987766554444

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG2504|consensus

Probab=99.68  E-value=1.7e-16  Score=136.81  Aligned_cols=134  Identities=43%  Similarity=0.853  Sum_probs=123.8

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhH
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTL   81 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~   81 (235)
                      +++.+..|+.+.+.||+|.|.+.+.|.++..+++++.. +++++|.+++...++.|+|.|+.+.+...++..+|+|+|+.
T Consensus        92 ~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lss-F~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~YF~kkR~l  170 (509)
T KOG2504|consen   92 GVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSS-FATSLWQLYLTFGVIGGLGLGLIYLPAVVILGTYFEKKRAL  170 (509)
T ss_pred             HHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhhccchhhhcchhhhhhhHhHHHHHH
Confidence            45678899999999999999999999999999999999 99999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhccCCch
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEW  136 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (235)
                      +.|+...+.++|.++.|.+..++.+.+|||+.+++.+.+.+-.+++...+++...
T Consensus       171 A~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~  225 (509)
T KOG2504|consen  171 ATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSP  225 (509)
T ss_pred             HHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            9999999999999999999999999999999999999888777777766665433

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.68  E-value=6.2e-16  Score=133.26  Aligned_cols=135  Identities=16%  Similarity=0.173  Sum_probs=105.8

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------chH--HHHHHHHHHHHHhhhhhhhHhHHHH
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---------NSI--EAQYITFGCIAGCGLSLAYVTAVVS   70 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~--~~l~i~~~~l~G~~~g~~~~~~~~~   70 (235)
                      .+++++++++|+++||+|||++++++.++.+++.+..+ ++         +++  ...++++|++.|++.|...+....+
T Consensus        66 ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~  144 (479)
T PRK10077         66 IGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSA-WPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMY  144 (479)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-hhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHH
Confidence            34678999999999999999999999999988887776 53         121  2234677999999999999999999


Q ss_pred             HHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHHHHHHH-hhccCCchh
Q psy6058          71 IAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQMCICG-ALMKDPEWW  137 (235)
Q Consensus        71 ~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~~  137 (235)
                      ++|++|++ ||++.++.+.+..+|.++++.++..+.        +.+|||+.|++.++..++..+.. +++++|++.
T Consensus       145 i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l  221 (479)
T PRK10077        145 IAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYL  221 (479)
T ss_pred             HHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHH
Confidence            99999765 999999999999999998877765543        35699999998776555544433 344555554

>TIGR00898 2A0119 cation transport protein

Probab=99.68  E-value=2.7e-16  Score=136.49  Aligned_cols=139  Identities=19%  Similarity=0.296  Sum_probs=115.2

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      .++++++++.|+++||+|||++++++.++..++.++.+ ++++++.+ ++.|++.|++.+...+....++.|++|++ |+
T Consensus       138 ~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~  215 (505)
T TIGR00898       138 VGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVF-LVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRA  215 (505)
T ss_pred             HHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHH-HcccHHHH-HHHHHHHHhhccchHHHHHHHhheecChhhhH
Confidence            35678999999999999999999999999999999999 89999866 56699999999999999999999998775 99


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH-hhccCCchhHhhhhhcC
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG-ALMKDPEWWIREQKRLQ  145 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  145 (235)
                      .+.++...+..+|.++++.++..+.+   ||+.+++.++..++..+.. +..++|++...+++.++
T Consensus       216 ~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~  278 (505)
T TIGR00898       216 IVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEE  278 (505)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHH
Confidence            99999999999999999888766543   9999998887655554443 44567777665544443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=99.68  E-value=9.5e-16  Score=132.91  Aligned_cols=124  Identities=16%  Similarity=0.188  Sum_probs=107.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-cc-chh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DK-KRT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~-~rg   80 (235)
                      .+.++.+++|+++||+|||++++++.++..++.++++ .+++++.+ ++.|++.|+|.+...+.....+.+.+ |+ +|+
T Consensus        53 ~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~-~a~~~~~l-i~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~  130 (495)
T PRK14995         53 VMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA-FSPTASWL-IATRALLAIGAAMIVPATLAGIRATFTEEKQRN  130 (495)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3457789999999999999999999999999999999 99999877 66699999999988887777777665 44 599


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      ++.+++.....+|..++|.+++.+.++.|||+.|++...+.++..++.
T Consensus       131 ~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~  178 (495)
T PRK14995        131 MALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLT  178 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998776655544443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.67  E-value=1.5e-15  Score=127.75  Aligned_cols=124  Identities=20%  Similarity=0.115  Sum_probs=109.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      .+.+++++.|++.||+|||+++..+.++..++++++. ++++++.+ ++.|++.|++.+...+....++.+++|+ +|++
T Consensus        56 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~  133 (390)
T PRK03545         56 VVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSA-LAWNFTVL-LISRIGIAFAHAIFWSITASLAIRVAPAGKKAQ  133 (390)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhh
Confidence            4567889999999999999999999999999999999 89999977 5569999999988888888999998876 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +.++...+..+|..++|.+++.+.+.+|||+.|++.+++.++..+..
T Consensus       134 ~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~  180 (390)
T PRK03545        134 ALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLL  180 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999887665554443

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.67  E-value=4.3e-16  Score=129.92  Aligned_cols=125  Identities=16%  Similarity=0.209  Sum_probs=110.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ...+++++.|+++||+|||+++.++.++..++.++.+ ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        41 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~  118 (399)
T TIGR00893        41 GYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA-FAGAYVSL-YILRVLLGAAEAPFFPGIILIVASWFPASERAT  118 (399)
T ss_pred             HHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH-HHcCHHHH-HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHH
Confidence            3567899999999999999999999999999999998 88898866 55699999999999999999999999764 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +.++......+|..+++.+.+.+.+..+||+.|++.+++.++..+..+
T Consensus       119 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  166 (399)
T TIGR00893       119 AVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWL  166 (399)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999988776655544433

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=99.66  E-value=2.4e-15  Score=128.26  Aligned_cols=120  Identities=15%  Similarity=0.092  Sum_probs=99.0

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      ..++++++|+++||+|||+++.++.+++.++.++.+ +++++..       .+++.|++.|++.|..++....+++|++|
T Consensus        76 ~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p  154 (432)
T PRK10406         76 RPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIA-CLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAV  154 (432)
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHh-hcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCC
Confidence            348899999999999999999999999999999998 8776531       34667999999999999999999999987


Q ss_pred             c-chhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHHH
Q psy6058          77 K-KRTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQM  124 (235)
Q Consensus        77 ~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~~  124 (235)
                      + +||++.++...+...|.++++.+...+.        +.+|||+.|++.++..++.
T Consensus       155 ~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        155 EGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            6 5999999988888888877776654443        2579999998866655443

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=99.66  E-value=8.6e-16  Score=126.65  Aligned_cols=123  Identities=25%  Similarity=0.365  Sum_probs=108.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      ...+++++.|+++||+|||++++++.++.+++.++.. ++++.+ .++..|++.|++.+...+....++.+++|+ +|++
T Consensus        44 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~  121 (352)
T PF07690_consen   44 GSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLA-FASNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGR  121 (352)
T ss_dssp             HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHH-HHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHH
T ss_pred             HHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhh-hhhhHH-HHhhhccccccccccccccccccccccchhhhhhh
Confidence            4578899999999999999999999999999977766 667777 447779999999999999999999999987 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +.++...+..+|..++|.+++.+.+..+||+.|++.+++.++..++
T Consensus       122 ~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il  167 (352)
T PF07690_consen  122 AFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAIL  167 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhh
Confidence            9999999999999999999999998999999999988877776654

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.66  E-value=1.3e-15  Score=126.60  Aligned_cols=124  Identities=31%  Similarity=0.515  Sum_probs=108.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      .+.+++++.|+++||+|||+++.++.++.+++.++++ ++++++.+ ++.|++.|++.+..++.....+.+++|++|+++
T Consensus        50 ~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  127 (377)
T TIGR00890        50 GLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA-IADSLAAL-YLTYGLASAGVGIAYGIALNTAVKWFPDKRGLA  127 (377)
T ss_pred             HHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH-HHHHHHHH-HHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHH
Confidence            4678999999999999999999999999999999999 89999876 555899999999888888888889999899999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      .++...+..+|..+++++.+.+.+..|||+.|++.+++.++..+..
T Consensus       128 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  173 (377)
T TIGR00890       128 SGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLG  173 (377)
T ss_pred             HHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            9999999999998888888888888899999998887666555443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=99.66  E-value=2.3e-15  Score=126.88  Aligned_cols=121  Identities=17%  Similarity=0.144  Sum_probs=107.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ...+++++.|+++||+|||++++.+.++..++.++.. ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        67 ~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~  144 (394)
T PRK10213         67 VAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVS-FANSFSLL-LIGRACLGLALGGFWAMSASLTMRLVPPRTVPK  144 (394)
T ss_pred             HHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHH-HHChHHHH-HHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHH
Confidence            3567899999999999999999999999999999998 88999877 55599999999999999999999999765 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC  125 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~  125 (235)
                      +.++...+..+|..++|.+++.+.+.+|||+.|++.+++.++..
T Consensus       145 a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~  188 (394)
T PRK10213        145 ALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI  188 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998776554433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=99.66  E-value=2.2e-15  Score=127.77  Aligned_cols=123  Identities=12%  Similarity=0.088  Sum_probs=106.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      +++++++++|+++||+|||++++.+.++..++.++.. .+++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        63 ~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~-~a~~~~~l-~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~  140 (413)
T PRK15403         63 GGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATL-FTTSMTQF-LIARFIQGTSICFIATVGYVTVQEAFGQTKGIK  140 (413)
T ss_pred             HHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHH-HcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            4567899999999999999999999999999999999 89999866 56699999988866666667788888775 899


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +.++...+..+|..++|.+++.+.++.|||+.|++.+++.++..+.
T Consensus       141 ~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        141 LMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998899999999888766555444

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.66  E-value=2.5e-15  Score=126.68  Aligned_cols=118  Identities=14%  Similarity=0.125  Sum_probs=105.6

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      .+.+++++.|+++||+|||+++..+.++++++.++.+ ++++++.+ +..|++.|++.+...+....++.+++|++|+++
T Consensus        56 ~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~-~a~~~~~l-l~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~  133 (393)
T PRK09705         56 TMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRE-LYPQSALL-LSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLV  133 (393)
T ss_pred             HHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHH-HCcchHHH-HHHHHHHHhHHHHHhhhhhHHHHHHccccchhH
Confidence            4678899999999999999999999999999999999 99999977 566999999999988888889999999889999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFL  122 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~  122 (235)
                      ++++..+..+|..+++.+++++.++. +||+.+.+.++..+
T Consensus       134 ~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~  174 (393)
T PRK09705        134 MGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAV  174 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999999999999988875 89998876555443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.66  E-value=1.7e-15  Score=129.99  Aligned_cols=127  Identities=35%  Similarity=0.783  Sum_probs=109.3

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLAT   83 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~   83 (235)
                      ..++.++.|+++||+|||++++.+.++..+++++++ ++++++.+++..|++.|++.+...++...++.++++++|+++.
T Consensus        67 ~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~r~~a~  145 (455)
T TIGR00892        67 LYAGGPISSILVNRFGCRPVVIAGGLLASLGMILAS-FSSNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFYRRRPLAN  145 (455)
T ss_pred             HHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHhhHHHHH
Confidence            457789999999999999999999999999999988 8888887755557888999887767777788889988899999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      ++.+.+..+|..++|.+.+.+.+.+|||+.|++.+++.++..+..++.
T Consensus       146 g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       146 GLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999888766555544443

>KOG1330|consensus

Probab=99.66  E-value=7.5e-18  Score=139.24  Aligned_cols=128  Identities=16%  Similarity=0.066  Sum_probs=115.6

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      ..+++++|++|+++||+.|++++.+|.+++.++.+..+ ++..+|++ +++|.+.|+|.+...+..+..+++.||. +|+
T Consensus        79 v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~-fs~~Fwq~-~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs  156 (493)
T KOG1330|consen   79 VVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG-FSNHFWQV-LLCRGFVGIGEASYSPIAPSLIADSFPDDKRS  156 (493)
T ss_pred             HHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH-HHHHHHHH-HHHHHHhccchhhhcccchhHhhhcCcchhhh
Confidence            46789999999999999999999999999999999999 99888866 6669999999999999999999999988 499


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhhc
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      ++.++++.+..+|..+|...+..+.+..+ |||.|+..+++.+++.++.+++
T Consensus       157 ~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f  208 (493)
T KOG1330|consen  157 RVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLF  208 (493)
T ss_pred             HHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhh
Confidence            99999999999999999999888888776 9999999888777776665443

>TIGR00900 2A0121 H+ Antiporter protein

Probab=99.66  E-value=2.6e-15  Score=124.32  Aligned_cols=124  Identities=15%  Similarity=0.089  Sum_probs=106.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      .+++++++.|+++||+|||++++.+.++..++.++.. +..     +++.+ ++.|++.|++.+...+...+++.+++|+
T Consensus        46 ~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~  123 (365)
T TIGR00900        46 PYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLP-FVALLGGLNIWQV-YVLAGILAIAQAFFTPAYQAMLPDLVPE  123 (365)
T ss_pred             HHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHH-HHHHcCCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            4567899999999999999999999998888887777 666     77766 5559999999999999999999999876


Q ss_pred             -chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          78 -KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        78 -~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                       +|+++.++.+.+..+|..++|.+++.+.+..||++.|++.++..++..+..
T Consensus       124 ~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  175 (365)
T TIGR00900       124 EQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI  175 (365)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence             599999999999999999999999999999999999988776555444443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=99.66  E-value=2.9e-15  Score=123.65  Aligned_cols=126  Identities=21%  Similarity=0.166  Sum_probs=115.1

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      ++.+++|+...+.||+.||++++....++.++.++.+ +++|++.+ ++.|++.|++.|..++....+..+..|+ +|++
T Consensus        60 ~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~a-lAp~f~~L-l~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~  137 (394)
T COG2814          60 GVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSA-LAPSFAVL-LLARALAGLAHGVFWSIAAALAARLVPPGKRGR  137 (394)
T ss_pred             HHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccchhh
Confidence            4578999999999999999999999999999999999 99999977 6669999999999999999999998755 6999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      ++++...+..++..+|.+++.++.+.+|||+.|++.+.+.++.++..+.
T Consensus       138 Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~  186 (394)
T COG2814         138 ALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWK  186 (394)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998887776666443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=99.65  E-value=3.6e-15  Score=124.54  Aligned_cols=123  Identities=15%  Similarity=0.032  Sum_probs=96.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      .+++++++.|+++||+|||+++..+.+....+.+... ..++++.+ ++.|++.|++.+. ..+....+++++|+ +|++
T Consensus        38 g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~  114 (368)
T TIGR00903        38 AFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLL-DPFNYEWL-LACQLLAALGQPF-LLNAFAPAASQIREERRDL  114 (368)
T ss_pred             HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHH
Confidence            4678899999999999999877655555545443333 34677766 6669999999986 45555566887766 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +.++...+..+|..+++.++..+.+++|||+.|++.+++.++..++.
T Consensus       115 a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~  161 (368)
T TIGR00903       115 VISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILV  161 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998777665554443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.65  E-value=4.3e-15  Score=124.84  Aligned_cols=120  Identities=17%  Similarity=0.233  Sum_probs=105.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      ...+++++.|+++||+|||++++++.++..++.++.. +.++++.+ +..|++.|++.+..++....++.+++|+ +|++
T Consensus        59 ~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~  136 (405)
T TIGR00891        59 SRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACG-FAPGYITM-FIARLVIGIGMGGEYGSSAAYVIESWPKHLRNK  136 (405)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhH
Confidence            4578899999999999999999999999999999998 88999877 5569999999999999999999998876 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhC--cHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYG--WRGTILLLAGTFLQM  124 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g--w~~~~~~~~~~~~~~  124 (235)
                      +.++...+..+|..+++.+.+.+.+..+  ||+.|++.++..++.
T Consensus       137 ~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~  181 (405)
T TIGR00891       137 ASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFA  181 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888776  999998765544433

>KOG2532|consensus

Probab=99.65  E-value=2.6e-16  Score=134.15  Aligned_cols=127  Identities=20%  Similarity=0.307  Sum_probs=112.8

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR   79 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r   79 (235)
                      +++++++..|+++||+|.|+++..+.++.++++++.. .+.  +++ .+++.|+++|++.|..++....+.++|.|. ||
T Consensus        85 G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P-~aa~~~~~-~~~~~R~lqGl~~g~~~pa~~~i~~~W~P~~Er  162 (466)
T KOG2532|consen   85 GYILGQIPGGYLADKFGARRVFFISGLISALLTLLTP-LAASIGFY-LLLVLRFLQGLGQGVLFPAIGSILAKWAPPNER  162 (466)
T ss_pred             HHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHH-HHHHhcch-hhHHHHHHhHHHHhHHHhhhhceeeeECCHHHH
Confidence            5678899999999999999999999999999998887 553  334 336679999999999999999999999876 69


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhh-hCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEE-YGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      ++..++...+..+|.+++-++++++.+. +||+++|++.+++.++..++++++
T Consensus       163 s~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~  215 (466)
T KOG2532|consen  163 STFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLF  215 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998 999999999999888877776543

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.64  E-value=7.2e-15  Score=124.85  Aligned_cols=115  Identities=22%  Similarity=0.304  Sum_probs=103.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+.+++++.|+++||+|||++++++.++..++.++.. ++++++.+ ++.|++.|++.+..++....++.+++|++ |++
T Consensus        65 ~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~l-~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~  142 (426)
T PRK12307         65 GRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG-LASGVIML-TLSRFIVGMGMAGEYACASTYAVESWPKHLKSK  142 (426)
T ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhH
Confidence            4578899999999999999999999999999999999 88998866 55699999999999999999999998775 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG  119 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~  119 (235)
                      +.++...+..+|.++++.+.+.+.+.++||+.|++..+
T Consensus       143 ~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~  180 (426)
T PRK12307        143 ASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLL  180 (426)
T ss_pred             hhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHH
Confidence            99999999999999999999999888999999987543

>KOG3764|consensus

Probab=99.63  E-value=6.1e-16  Score=125.73  Aligned_cols=129  Identities=21%  Similarity=0.240  Sum_probs=117.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc--hh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK--RT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~--rg   80 (235)
                      .+.+.+|+.|.+.||+|+|..+++|.+++..++++++ +..+++.+ ++.|.++|+|.+...+...+++++.||++  |+
T Consensus       118 ~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFa-fg~sy~~l-~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~  195 (464)
T KOG3764|consen  118 VQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFA-FGNSYPML-FVARSLQGVGSAFADTSGLAMLADVFPEDNERG  195 (464)
T ss_pred             HHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHH-HcchhHHH-HHHHHHhhhhHHHHHhhhHHHHHHHcccchhhh
Confidence            3567899999999999999999999999999999999 99999977 45599999999999999999999999874  89


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhccC
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKD  133 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~  133 (235)
                      +++|+...+.++|..++|++++++.+..|.+..|.++++++++-..+.+++.+
T Consensus       196 ~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~  248 (464)
T KOG3764|consen  196 SVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIE  248 (464)
T ss_pred             HHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeC
Confidence            99999999999999999999999999999999999999988887777665543

>KOG0254|consensus

Probab=99.63  E-value=2.3e-15  Score=131.08  Aligned_cols=150  Identities=21%  Similarity=0.160  Sum_probs=124.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      +..++++++|+++|++|||+.++++.+++.++.++.+ ++++++++ +++|++.|+|.|......+.+++|..|++ ||.
T Consensus       101 ga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~-~a~~~~~l-~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~  178 (513)
T KOG0254|consen  101 GALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIA-LAPSWYQL-IVGRILTGLGVGGASVLAPVYISEIAPAHIRGT  178 (513)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHhccchhhhhhcchhhHhhcCChhhhHH
Confidence            3478999999999999999999999999999999999 99999866 67799999999999999999999999886 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhh--hCcHHHHHHHHHHHHHHHHH-HhhccCCchhHhhhhhcCCCCCCCccccccC
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEE--YGWRGTILLLAGTFLQMCIC-GALMKDPEWWIREQKRLQNPTPSHSIATKSN  158 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~--~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (235)
                      ..+..+....+|..++ .+.+...++  .+||..+.+..+.+++..+. .+.+++|+|+.++++.+++++    .+++..
T Consensus       179 l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~----~l~~l~  253 (513)
T KOG0254|consen  179 LVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKR----SLKRLR  253 (513)
T ss_pred             HHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHH----HHHHHh
Confidence            9999999999888887 444555544  48998888877766555555 344589999988777766666    555555


Q ss_pred             c
Q psy6058         159 R  159 (235)
Q Consensus       159 ~  159 (235)
                      +
T Consensus       254 g  254 (513)
T KOG0254|consen  254 G  254 (513)
T ss_pred             C
Confidence            4

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=99.63  E-value=1.8e-14  Score=103.00  Aligned_cols=125  Identities=25%  Similarity=0.358  Sum_probs=107.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ...+++++.|++.||+|||+.+..+.++..++.+... ..++.+.+ ...+++.|++.+...+....++.+.+|++ |++
T Consensus        10 ~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   87 (141)
T TIGR00880        10 GQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA-LSSNITVL-IIARFLQGFGAAFALVAGAALIADIYPPEERGV   87 (141)
T ss_pred             HHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhH
Confidence            3467889999999999999999999999999988888 77887755 55589999999988888889999998775 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +.++.+....+|..++|.+.+.+.+..+|++.+++.+.+.++..+..+
T Consensus        88 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (141)
T TIGR00880        88 ALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLA  135 (141)
T ss_pred             HHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999887776655555443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=99.63  E-value=4.2e-16  Score=127.80  Aligned_cols=126  Identities=16%  Similarity=0.189  Sum_probs=114.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .|.++-++.|.++||.++|..+.+|.++.++.+++++ ++++.+.+ .++-++.|...|..+|++...++.|++++ ||+
T Consensus        76 ~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~G-fs~s~~~~-~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~  153 (448)
T COG2271          76 TYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFG-FSPSLFLF-AVLWVLNGWFQGMGWPPCARTITHWFSRKERGT  153 (448)
T ss_pred             HHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHh-hhhHHHHH-HHHHHHHHHHhcCCCcHHHHHHHHHcCccccCc
Confidence            4678889999999999999999999999999999999 99988855 66688999999999999999999999875 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHH--HHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          82 ATSLGACGTGIGTFVYAPLT--QYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~--~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      ..++.+++-++|+++.|++.  +++..+.+||..|++.+++++++.++.++
T Consensus       154 ~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~  204 (448)
T COG2271         154 WWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLF  204 (448)
T ss_pred             eEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999  89999999999999999887776666544

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=99.63  E-value=2.1e-15  Score=130.08  Aligned_cols=124  Identities=19%  Similarity=0.260  Sum_probs=110.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      +..++.++.|+++||+|||++++++.++..++.+++. .+++++.+ ++.|++.|++.+...+....++.+++|+ +|++
T Consensus        49 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~  126 (485)
T TIGR00711        49 ANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCG-VAPNLELM-IIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGR  126 (485)
T ss_pred             HHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-CcCCHHHH-HHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHH
Confidence            4568899999999999999999999999999999999 89999866 6669999999999999999999999876 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +.+++..+..+|..++|.+++++.++++||+.|++.+.+.++..++.
T Consensus       127 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~  173 (485)
T TIGR00711       127 AMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVA  173 (485)
T ss_pred             HHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHH
Confidence            99999999999999999999999999999999998776655554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=99.63  E-value=6.5e-15  Score=123.60  Aligned_cols=123  Identities=15%  Similarity=0.206  Sum_probs=108.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+.+++++.|+++||+|||+++.++.++.+++.++++ ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        50 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~-~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~  127 (382)
T PRK10091         50 GVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT-LSSSYLML-AIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTA  127 (382)
T ss_pred             HHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH-HhCcHHHH-HHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhH
Confidence            4678899999999999999999999999999999999 89999877 45599999999988888888888998774 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +.++...+..+|..++|++++.+.+..+||+.|++.+++.++..+.
T Consensus       128 ~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~  173 (382)
T PRK10091        128 AVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLAS  173 (382)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888765554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=99.63  E-value=5.7e-15  Score=126.05  Aligned_cols=121  Identities=13%  Similarity=0.143  Sum_probs=107.6

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+.+++++.|+++||+|||+++.++.++..++.++.. ++++++.+ ++.|++.|++.|..++....++.+++|++ |++
T Consensus        70 ~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~  147 (434)
T PRK11663         70 TYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG-FSSSLWAF-ALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGG  147 (434)
T ss_pred             HHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHHHHHHHccchHHHHHHHHhCCHHHHHH
Confidence            4678899999999999999999999999999999998 88998866 55589999999988888889999999874 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC  125 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~  125 (235)
                      ++++++.+..+|..++|.+.+.+.+.+|||+.|++.+++.++..
T Consensus       148 ~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~  191 (434)
T PRK11663        148 WWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVG  191 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998777554443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=99.61  E-value=3.3e-15  Score=124.23  Aligned_cols=125  Identities=14%  Similarity=0.145  Sum_probs=107.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+.+++++.|+++||+|||++++++.++..++.++.. ++++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        42 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~  119 (379)
T TIGR00881        42 AYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFG-FSTSLWVM-AALWALNGIFQGMGWPPCGRTVTKWFSRSERGT  119 (379)
T ss_pred             HHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHhhccccCCchHHHHHHhcCHhhhee
Confidence            4567899999999999999999999999999999999 88888866 55699999999999999999999998875 999


Q ss_pred             HHHHHHhhHHHHHHHHH-HHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          82 ATSLGACGTGIGTFVYA-PLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~-~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +.++...+..+|..++| .+...+.+..+|++.|++.+++.++..+..+
T Consensus       120 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (379)
T TIGR00881       120 WVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICF  168 (379)
T ss_pred             eEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            99999999999999999 4666777788999999887776555444433

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.61  E-value=1.9e-14  Score=121.49  Aligned_cols=123  Identities=17%  Similarity=0.128  Sum_probs=106.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      ++.+++++.|+++||+|||+++..+.++..++.++.. +.++++.+ ++.|++.|++.+...+....++.+++|+ +|++
T Consensus        62 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~  139 (406)
T PRK11551         62 GLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATA-QAWDFPSL-LVARLLTGVGLGGALPNLIALTSEAVGPRLRGT  139 (406)
T ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHH
Confidence            4567899999999999999999999999999888888 88888866 5569999999999889889999999876 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +.++.+.+..+|..+++.++..+.+..+|++.|++.+++.++..+.
T Consensus       140 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (406)
T PRK11551        140 AVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPL  185 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888899999998877654444433

>TIGR00806 rfc RFC reduced folate carrier

Probab=99.61  E-value=7.4e-14  Score=117.58  Aligned_cols=125  Identities=11%  Similarity=0.036  Sum_probs=106.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .|+++.++.|+++||+|.|+++.++.+.+++..++.. +++++..+ .+.|++.|++.|..+ +...++..|+|++ |++
T Consensus        74 sYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~-fa~Sl~~L-~i~R~llGvaEA~~~-A~~syI~~WfP~kER~r  150 (511)
T TIGR00806        74 SHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLL-LGTSVWHM-QLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQR  150 (511)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHH
Confidence            4788999999999999999999999999999999999 99898877 566999999999998 8899999999885 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHH---HHHHHHHHHHHhhc
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLL---AGTFLQMCICGALM  131 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~---~~~~~~~~~~~~~~  131 (235)
                      +.++..++..+|.++++++++. +..+|||+.+.+.   ....++.++..+++
T Consensus       151 atsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~L  202 (511)
T TIGR00806       151 AAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNIISLVFMTFSVFLALFL  202 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999 6678999766442   23334444444444

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=99.61  E-value=1.3e-14  Score=121.26  Aligned_cols=124  Identities=16%  Similarity=0.104  Sum_probs=109.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ...+++++.|+++||+|||+++..+.++..++.+... ..++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        52 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  129 (385)
T TIGR00710        52 GFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA-LSNNIETL-LVLRFVQAFGASAGSVISQALVRDIYPGEELSR  129 (385)
T ss_pred             HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHH
Confidence            3567899999999999999999999999999999998 88888866 55699999999999999999999998775 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +.++.+....+|..++|.+++.+.+..+|++.+++.+++.++..+..
T Consensus       130 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  176 (385)
T TIGR00710       130 IYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALI  176 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988777655554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK15075 citrate-proton symporter; Provisional

Probab=99.61  E-value=2.9e-14  Score=121.70  Aligned_cols=114  Identities=19%  Similarity=0.162  Sum_probs=96.6

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      .+++++.|+++||+|||++++.+.++..++.++++ ++++++.       ++++.|++.|++.+...+....+++|++|+
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~  148 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA-FVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATP  148 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCc
Confidence            35788999999999999999999999999999999 8888763       236679999999999888888999999977


Q ss_pred             c-hhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHH
Q psy6058          78 K-RTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAG  119 (235)
Q Consensus        78 ~-rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~  119 (235)
                      + |++++++...+..+|..+++.+++.+.        +.+|||+.|++.+.
T Consensus       149 ~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~  199 (434)
T PRK15075        149 GRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCL  199 (434)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHH
Confidence            5 999999998888888887777766653        46899999987443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.60  E-value=1.7e-18  Score=148.21  Aligned_cols=151  Identities=18%  Similarity=0.203  Sum_probs=124.4

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN---SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      .+..+|++++|+++||+|||+.++++.++..++.++.+ +++   +++.+ .+.|++.|++.|...+....++.|..|+ 
T Consensus        57 ~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~-~~~R~~~G~~~g~~~~~~~~~~~E~~~~~  134 (451)
T PF00083_consen   57 IGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA-FAPSYNNFWML-LIGRFLIGFGIGGAYVVSPIYISEIAPPK  134 (451)
T ss_pred             hhhccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccccccccccccc
Confidence            45689999999999999999999999999999999999 888   88766 6669999999999999999999998766 


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhh---hCcHHHHHHHHHHHHHHHHH-HhhccCCchhHhhhhhcCCCCCCCcc
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEE---YGWRGTILLLAGTFLQMCIC-GALMKDPEWWIREQKRLQNPTPSHSI  153 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~---~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (235)
                      +|+...++.+.++.+|..++..+...+...   .+||..+.+.++..++..+. .+++|+|+|+..+++.+++++    .
T Consensus       135 ~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~----~  210 (451)
T PF00083_consen  135 HRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEK----V  210 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccc----c
Confidence            499999999999999988887775544332   45999998877765444333 567799999998888887777    5


Q ss_pred             ccccC
Q psy6058         154 ATKSN  158 (235)
Q Consensus       154 ~~~~~  158 (235)
                      +++.+
T Consensus       211 l~~~~  215 (451)
T PF00083_consen  211 LRKLR  215 (451)
T ss_pred             ccccc
Confidence            55544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=99.60  E-value=2.7e-14  Score=119.31  Aligned_cols=123  Identities=15%  Similarity=0.144  Sum_probs=108.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ...++.+++|+++||+|||+++..+.++..++.+++. +.++++.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        38 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  115 (377)
T PRK11102         38 GFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA-LAQTIDQL-IYMRFLHGLAAAAASVVINALMRDMFPKEEFSR  115 (377)
T ss_pred             HHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            3567899999999999999999999999999999998 88888866 55699999999988888889999998775 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +.++.+.+..+|..++|.+++.+.+..+|++.|++.+++.++..++
T Consensus       116 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  161 (377)
T PRK11102        116 MMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAAL  161 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877766555444

>PRK03699 putative transporter; Provisional

Probab=99.59  E-value=3e-14  Score=120.06  Aligned_cols=125  Identities=9%  Similarity=0.049  Sum_probs=106.1

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ++.+++++.|++.||+|||+++..+.++..++.++.. ++++++.+ ++.|++.|++.+...+....++.+++|++ |+.
T Consensus        54 ~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~-~~~~~~~~-~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~  131 (394)
T PRK03699         54 GILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLM-FSHSLALF-SIAMFVLGVVSGITMSIGTFLITHVYEGKQRGS  131 (394)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HcchHHHH-HHHHHHHHHhhHhhccchhHHhhhhcccchHHH
Confidence            4678899999999999999999999999999999998 88888866 56699999999988888888899988775 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +.+..+....+|+.++|.+.+.+.. ..|||+.|.+.+++.++..++.+
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        132 RLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            9999888889999999999888765 57999999987776655544433

>TIGR00895 2A0115 benzoate transport

Probab=99.59  E-value=5.9e-15  Score=123.59  Aligned_cols=120  Identities=20%  Similarity=0.247  Sum_probs=105.8

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+.+++++.|+++||+|||+.+..+.++..++.++.. ..++++.+ ++.+++.|++.+...+....++.+++|++ |++
T Consensus        64 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~  141 (398)
T TIGR00895        64 GMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA-LATNVTQL-LILRFLAGLGLGGLMPNLNALVSEYAPKRFRGT  141 (398)
T ss_pred             HHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HccchHHH-HHHHHHHhcccccchhhHHHHHHHHcCHHhhch
Confidence            4568899999999999999999999999999998888 88888866 55699999999999999999999999875 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM  124 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~  124 (235)
                      +.++...+..+|..+++.+.+.+.+..||++.+++.+++.++.
T Consensus       142 ~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~  184 (398)
T TIGR00895       142 AVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLL  184 (398)
T ss_pred             hHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHH
Confidence            9999999999999999999999999999999998876444333

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=99.59  E-value=2.6e-14  Score=120.19  Aligned_cols=124  Identities=17%  Similarity=0.147  Sum_probs=107.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      .+.+++++.|+++||+|||+.++.+.++..++.++.. .+++.+.+ ++.|++.|++.+..++....++.+++|+ +|++
T Consensus        50 ~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~  127 (392)
T PRK10473         50 GMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS-LAETSSLF-LAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAK  127 (392)
T ss_pred             HHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH-HhCcHHHH-HHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHH
Confidence            3467789999999999999999999999999999888 88888766 5569999999998888888999998876 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +.++.+....+|..++|.+++.+.+..+|++.|++.+++.++..++.
T Consensus       128 ~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~  174 (392)
T PRK10473        128 VLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLS  174 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999888888999999998877655554443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.58  E-value=1.6e-14  Score=123.62  Aligned_cols=124  Identities=19%  Similarity=0.139  Sum_probs=102.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-c
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN---SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-K   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~   78 (235)
                      ++.++++++|+++||+|||++++++.++..++.++.. ...   +++.+ ++.|++.|++.+...+....++.+++|+ +
T Consensus        83 ~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~  160 (481)
T TIGR00879        83 GGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG-LAAFALSVEML-IVGRVLLGIGVGIASALVPMYLSEIAPKAL  160 (481)
T ss_pred             HHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHH-HhccccchHHH-HHHHHHHHhhhhHHHhHHHHHHHccCChhh
Confidence            4578999999999999999999999999999988886 443   33344 6669999999999999999999999876 4


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHH---HHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLT---QYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~---~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      |+++.++++.+..+|.++++.++   ....+..+||+.|++.++..++..+..
T Consensus       161 r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       161 RGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998   555567899999998665544444433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.58  E-value=6.3e-15  Score=126.75  Aligned_cols=125  Identities=16%  Similarity=0.266  Sum_probs=107.1

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR   79 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r   79 (235)
                      .+.+++++.|+++||+|+|+++.++.++.+++.++.. ++  .+++.+ ++.|++.|++.+...+....++.+++|+ +|
T Consensus        88 ~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~l-~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r  165 (465)
T TIGR00894        88 GQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIP-WAAGGGIALV-VFCRVIQGLAQGSVSPATHKIIVKWAPPKER  165 (465)
T ss_pred             HHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHH-HHHHcCchHH-HHHHHHHHHhcccchhhHHHHHHhcCCHHHH
Confidence            4678899999999999999999999999888887765 43  445544 6669999999999999999999999986 59


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHHHHh
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +++.++...+..+|.++++.+.+.+.+.+ |||+.|++.+++.++..++++
T Consensus       166 ~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~  216 (465)
T TIGR00894       166 SRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF  216 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence            99999999999999999999999999884 999999998877665555543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.58  E-value=4.9e-14  Score=117.77  Aligned_cols=121  Identities=22%  Similarity=0.232  Sum_probs=100.7

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-------HHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-------QYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-------l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      .+++++.|+++||+|||++++++.++..++.++.. +++++..       ++++.|++.|++.+...+....++.+++|+
T Consensus        49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~  127 (394)
T TIGR00883        49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG-LLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPP  127 (394)
T ss_pred             hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh-hCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCc
Confidence            46889999999999999999999999999999998 8877642       346669999999999889999999999866


Q ss_pred             -chhHHHHHHHhhHHHHHHHHHHHHHHHH--------hhhCcHHHHHHHHHHHHHHHH
Q psy6058          78 -KRTLATSLGACGTGIGTFVYAPLTQYWI--------EEYGWRGTILLLAGTFLQMCI  126 (235)
Q Consensus        78 -~rg~~~~~~~~~~~~g~~l~~~~~~~~~--------~~~gw~~~~~~~~~~~~~~~~  126 (235)
                       +|++..++...+..+|..+++.+...+.        +.++||+.|++.+++.++...
T Consensus       128 ~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       128 GKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence             5999999999999999999988876653        357899999876665544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10504 putative transporter; Provisional

Probab=99.58  E-value=4.6e-14  Score=121.52  Aligned_cols=124  Identities=12%  Similarity=0.170  Sum_probs=107.6

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ...++.+++|+++||+|||++++.+.++..++.++.. ++++.+.+ ++.|++.|++.+...+....++.+++|++ |++
T Consensus        57 ~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  134 (471)
T PRK10504         57 TVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCA-LSGTLNEL-LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMA  134 (471)
T ss_pred             HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHH-HhCCHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHH
Confidence            3467899999999999999999999999999888888 88888866 56699999999999888888999998875 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +.++......+|..++|.+++.+.++.|||+.|++...+..+..+..
T Consensus       135 ~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~  181 (471)
T PRK10504        135 AMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIAT  181 (471)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998776555444443

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=99.58  E-value=5.9e-14  Score=118.65  Aligned_cols=124  Identities=19%  Similarity=0.151  Sum_probs=106.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+.+++++.|+++||+|||++++++.++..++.++.. .+++++.+ +..|++.|++.+...+....++.+.+|++ |++
T Consensus        60 ~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~  137 (406)
T PRK15402         60 GGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAIL-LAQSIEQF-TLLRFLQGIGLCFIGAVGYAAIQESFEEADAIK  137 (406)
T ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHH
Confidence            4567889999999999999999999999999998888 88888866 55699999998888888888889988775 888


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +.++......+|..++|.+++.+.+..+||+.|++.+++.++..+..
T Consensus       138 ~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        138 ITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHH
Confidence            89998888888999999999999998999999988777665554443

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.57  E-value=1e-13  Score=120.05  Aligned_cols=115  Identities=18%  Similarity=0.274  Sum_probs=103.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+++++++.|+++||+|||+.++++.++..++.++.. +.++++.+ ++.|++.|++.+..++....++.+++|++ |++
T Consensus        67 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~  144 (496)
T PRK03893         67 SRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG-FAPGYWTL-FIARLVIGMGMAGEYGSSATYVIESWPKHLRNK  144 (496)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            4567889999999999999999999999999999998 88888866 55699999999998999999999988775 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG  119 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~  119 (235)
                      +.++...+..+|..++|.+.+.+.+.++||+.|++..+
T Consensus       145 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~  182 (496)
T PRK03893        145 ASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGIL  182 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999886443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=99.56  E-value=1.3e-13  Score=116.60  Aligned_cols=120  Identities=19%  Similarity=0.189  Sum_probs=103.8

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLAT   83 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~   83 (235)
                      .+.++++|+++||+|||+++.++.++..++.+.+. ..++++.+ +..|++.|++.+...+...+++.+++|+ +|+++.
T Consensus        60 ~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~  137 (400)
T PRK11646         60 QGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA-IAHEPWLL-WLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFF  137 (400)
T ss_pred             HHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            45578999999999999999999999999999998 88888866 5559999999888888888889998866 599999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      ++......+|..++|.+++.+. .+||++.|++.++..++..++
T Consensus       138 ~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~~~~i~  180 (400)
T PRK11646        138 SLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFVLAAAF  180 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999998 789999999877665544433

>KOG2533|consensus

Probab=99.55  E-value=7.6e-15  Score=125.71  Aligned_cols=127  Identities=17%  Similarity=0.152  Sum_probs=109.9

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      ++|+++.++++.+.||++..+.+....+++.+-.++.. ..+|++.+ ++.|++.|+..+..+|....+++.|+.+ +|+
T Consensus        92 v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~-~~~s~~~~-ialr~llGl~es~~wP~~~~~lg~wy~~~e~g  169 (495)
T KOG2533|consen   92 VGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTA-AVHSFPGL-IALRFLLGLFESGGWPGVVAILGNWYGKSERG  169 (495)
T ss_pred             HHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHH-HHhhhHHH-HHHHHHHHHHhcccchHHHHHHHhhcChhhhh
Confidence            57889999999999999988888777777777777777 78899866 7779999999999999999999999977 599


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHH------hhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWI------EEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~------~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      ..++++.+...+|+++|+.++..+.      ...||||.|++.+++.+...++.++
T Consensus       170 ~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~  225 (495)
T KOG2533|consen  170 LRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFF  225 (495)
T ss_pred             hhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEE
Confidence            9999999999999999999988864      3469999999999887777666443

>PRK11043 putative transporter; Provisional

Probab=99.55  E-value=1.1e-13  Score=116.68  Aligned_cols=125  Identities=12%  Similarity=0.093  Sum_probs=106.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+.++++++|+++||+|||+.+..+.++..++.++.. +.++++.+ ++.|++.|++.+...+.....+.+++|++ ++.
T Consensus        53 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~  130 (401)
T PRK11043         53 GFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGML-WVESAAQL-LVLRFVQAVGVCSAAVIWQALVIDRYPAQKANR  130 (401)
T ss_pred             HHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHH-HhcCHHHH-HHHHHHHHhhhHHHHHHHHHHHHHhcCcHHHHH
Confidence            4578999999999999999999999999999998888 88888866 55599999988877777778888988775 788


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ..+.......+|..++|.+++++.+.+|||+.|++.+++.++..+..+
T Consensus       131 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~  178 (401)
T PRK11043        131 VFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTL  178 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence            888888888999999999999999999999999988776665554443

>KOG2615|consensus

Probab=99.55  E-value=2.2e-14  Score=116.22  Aligned_cols=102  Identities=17%  Similarity=0.211  Sum_probs=90.8

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      +++++.++.+|.++||+|||+++++|.+..+++.++.+ .+.|+ ..+++.|++.|+.-|. ....-++++|..++ +|+
T Consensus        79 ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~-~S~~F-~afv~aR~l~Gi~kgn-l~v~rAiisdV~sek~r~  155 (451)
T KOG2615|consen   79 ILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWA-LSRNF-AAFVLARFLGGIFKGN-LSVIRAIISDVVSEKYRP  155 (451)
T ss_pred             HHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHhhhhccCc-hHHHHHHHHhhcChhhcc
Confidence            46789999999999999999999999999999999999 99999 4556679999997765 46677899998755 599


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIE  106 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~  106 (235)
                      .+++...+++++|..+||.+++++.+
T Consensus       156 l~ms~v~~a~~lGfilGPmIGgyla~  181 (451)
T KOG2615|consen  156 LGMSLVGTAFGLGFILGPMIGGYLAQ  181 (451)
T ss_pred             ceeeeeehhhhcchhhcchhhhHHHh
Confidence            99999999999999999999999987

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=99.55  E-value=1.1e-13  Score=116.51  Aligned_cols=122  Identities=20%  Similarity=0.181  Sum_probs=104.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      .+.++++++|+++||+|||++++++.++..++.++.. ..++++.+ ++.|++.|++.+...+....+..+.+++ +++.
T Consensus        55 ~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  132 (394)
T PRK11652         55 TYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVAL-FAHSLTVL-IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRH  132 (394)
T ss_pred             HHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHH
Confidence            4578899999999999999999999999999999888 88888866 5569999998887777777777887765 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCI  126 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  126 (235)
                      +.++...+..++..++|.+++.+.+..|||+.|++.+++.++..+
T Consensus       133 ~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~  177 (394)
T PRK11652        133 ANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTF  177 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999989999999987765544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=99.55  E-value=5.8e-14  Score=121.39  Aligned_cols=116  Identities=16%  Similarity=0.162  Sum_probs=100.0

Q ss_pred             ccchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc---h
Q psy6058           4 PLLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK---R   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~---r   79 (235)
                      ..+..+++|+++|| +|||++++++.+++.++.+++. ++.+...++.+.+++.|+|.|...+...+.+++.+|++   |
T Consensus        63 ~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~-~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~  141 (489)
T PRK10207         63 VYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG-MSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRL  141 (489)
T ss_pred             HHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-HhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhh
Confidence            34567799999999 9999999999999999999998 77664444445689999999999999999999988653   4


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHH
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT  120 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~  120 (235)
                      +.+.++++.+.++|.+++|.+++++.+++|||+.|++.++.
T Consensus       142 ~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~  182 (489)
T PRK10207        142 DGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGAG  182 (489)
T ss_pred             hcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Confidence            67899999999999999999999999999999999886543

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.54  E-value=1e-13  Score=113.97  Aligned_cols=123  Identities=28%  Similarity=0.347  Sum_probs=109.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      ...+++++.|+++||+|||+.+.++.++..++.++.. ..++++.+ +..|++.|++.+...+....++.+++|+ +|++
T Consensus        46 ~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  123 (352)
T cd06174          46 GYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA-FASSLWLL-LVGRFLLGLGGGALYPAAAALIAEWFPPKERGR  123 (352)
T ss_pred             HHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHcccccccHhHHHHHHHhCCccchhh
Confidence            4568899999999999999999999999999999998 88888866 5569999999999999999999999987 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      ..++......+|..++|.+++.+.+..+|++.+++.+++.++..+.
T Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (352)
T cd06174         124 ALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALL  169 (352)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998877765554443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PTZ00207 hypothetical protein; Provisional

Probab=99.54  E-value=1.4e-13  Score=120.07  Aligned_cols=126  Identities=19%  Similarity=0.180  Sum_probs=101.5

Q ss_pred             chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccch
Q psy6058           6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKR   79 (235)
Q Consensus         6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~r   79 (235)
                      +++++.|+++||+|+|++++++.+++.++.++++ ++      .+++.+ .+.|++.|+|.+..++.....+.+|||++|
T Consensus        76 ~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~a-la~~~~i~~s~~~l-~l~r~l~G~G~~~~~~~~~~~i~~~Fp~~R  153 (591)
T PTZ00207         76 YFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFA-LTFQEVIEGSVVRL-SVYNGLMTLGCMLFDLGAVVTVLSVFPSNR  153 (591)
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HHhcccccCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            4566789999999999999999999999999998 76      577766 555999999999888888888899999999


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH-hhccCC
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG-ALMKDP  134 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~-~~~~~~  134 (235)
                      |++.|+...+.++|+++.+.+...+.. .+|+..|++.+++.+++.+++ ++.+.|
T Consensus       154 G~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~~vv~ll~~~~vr~p  208 (591)
T PTZ00207        154 GAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFALVVGILAIVFMRLP  208 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHHhheeCC
Confidence            999999999999999865555444443 468888888887665555553 344444

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.53  E-value=2.1e-13  Score=118.21  Aligned_cols=150  Identities=14%  Similarity=0.049  Sum_probs=97.4

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHH-HHH-hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVL-SAT-VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      ..++.+++|+++||+|||++++++.++..++.+. ... .+++...+ ++.+++.|++.+........++.+.+|++ |+
T Consensus       299 ~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~g~~~~~~~~~~p~~~Rg  377 (490)
T PRK10642        299 MLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLI-FAGLLMLAVILNCFTGVMASTLPAMFPTHIRY  377 (490)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCccch
Confidence            4567788999999999999988887654433322 220 23344434 45577778777766677777888888887 99


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHH-hhccCCchhHhh-----hhhcCCCCCCCcc
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICG-ALMKDPEWWIRE-----QKRLQNPTPSHSI  153 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~  153 (235)
                      ++.++.+....+++.++|.+.+++.+..+ |+..+++..+..++.++.. +++|+|++..++     ++.+++++    .
T Consensus       378 ~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~~~~~~~~~~a~~----~  453 (490)
T PRK10642        378 SALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGATPAASDIQEAKE----I  453 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCccccccchhhHHH----H
Confidence            99997444455667889999999887654 6666655554444443333 345666665433     44444444    5


Q ss_pred             ccccC
Q psy6058         154 ATKSN  158 (235)
Q Consensus       154 ~~~~~  158 (235)
                      +++.+
T Consensus       454 l~~~~  458 (490)
T PRK10642        454 LVEHY  458 (490)
T ss_pred             hhccc
Confidence            55554

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=99.53  E-value=1.2e-13  Score=116.37  Aligned_cols=114  Identities=12%  Similarity=0.060  Sum_probs=96.6

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .+.++++++|+++||+|||++++++.++..++.+++. ...+.    +..|++.|++.+...+...+++.+++|++ |++
T Consensus        50 ~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~-~~~~~----~~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~  124 (393)
T PRK11195         50 AYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLML-FGIHP----LLAYGLVGIGAAAYSPAKYGILTELLPGEKLVK  124 (393)
T ss_pred             HHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHH-HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            4578899999999999999999999999988887776 65553    34589999999999999999999999875 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFL  122 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~  122 (235)
                      ++++......+|..+||.+++.+.+. .|+..+.+.+.+.+
T Consensus       125 a~~~~~~~~~~~~~~Gp~lgG~l~~~-~~~~~~~i~~~~~~  164 (393)
T PRK11195        125 ANGWMEGSTIAAILLGTVLGGALADP-HAEAALAVCALIYL  164 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence            99999999999999999999999885 47766666554433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=99.53  E-value=2.1e-13  Score=113.38  Aligned_cols=116  Identities=20%  Similarity=0.262  Sum_probs=93.6

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      ++++++++.|+++||+|||+.++++.++..++.+++. +++ +++.+ ++.|++.|++.+ .++....++++++|+ +|+
T Consensus        49 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~-~~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~r~  125 (366)
T TIGR00886        49 AGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG-LAVQSYSVL-LLLRLFIGIAGG-SFASCMPWISFFFPKKIQG  125 (366)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHhhhHHHH-HHHHHHHHHhch-hhHhHHHHHHHhcCHhhhh
Confidence            4678999999999999999999999999999999998 888 88866 556999999865 456677888898876 599


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHh----------hhCcHHHHHH-HHHHH
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIE----------EYGWRGTILL-LAGTF  121 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~----------~~gw~~~~~~-~~~~~  121 (235)
                      ++.++...+..+|..+++.+++.+..          +.+||+.|++ .+++.
T Consensus       126 ~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~  177 (366)
T TIGR00886       126 TALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGIL  177 (366)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHH
Confidence            99999987778888777777766554          2489999844 34433

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.53  E-value=2.5e-13  Score=117.28  Aligned_cols=124  Identities=15%  Similarity=0.130  Sum_probs=97.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      ++.+++++.|+++||+|||+++.++.++.+++.++.+ ++++++.+ ++.|++.|++.+.. .+...++++++|+ +||+
T Consensus        83 ~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~-~~~s~~~l-~~~r~l~G~~~~~~-~~~~~~i~~~~~~~~rg~  159 (476)
T PLN00028         83 GSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMS-LVSSATGF-IAVRFFIGFSLATF-VSCQYWMSTMFNGKIVGT  159 (476)
T ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HhcCHHHH-HHHHHHHHHHHHhh-HHHHHHHHHhcChhheeH
Confidence            4567889999999999999999999999999998888 88888866 45599999988754 4455678899976 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHH----h-----hhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWI----E-----EYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~----~-----~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +.++......+|..+++.+.+.+.    +     ..|||+.|++.+++.++..+..+
T Consensus       160 a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~  216 (476)
T PLN00028        160 ANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVL  216 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence            999988777777777766654442    2     25899999998887665555543

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.52  E-value=2.9e-13  Score=114.26  Aligned_cols=122  Identities=17%  Similarity=0.171  Sum_probs=101.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      .+.+++++.|+++||+|||++++.+.++..++.++.. ..++++.+ ++.|++.|++.+ ..+....++.+.+|+ +|++
T Consensus        66 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~  142 (408)
T PRK09874         66 FSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMG-LAQNIWQF-LILRALLGLLGG-FVPNANALIATQVPRNKSGW  142 (408)
T ss_pred             HHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHHHHHHHHhhh-hHHhHHHHHHHhcCHhhhhH
Confidence            3467889999999999999999999999999988888 88888866 556999998755 456666777777765 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +.++......+|..++|.+.+.+.+..+|++.|++.+++.++..+.
T Consensus       143 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  188 (408)
T PRK09874        143 ALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLV  188 (408)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887765554444

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.52  E-value=3.2e-14  Score=122.51  Aligned_cols=125  Identities=11%  Similarity=0.043  Sum_probs=102.8

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV-----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      .+.+++++.|+++||+|||+++.++.++++++.++.+ .     +++++.+ ++.|++.|++.+...+....++++++|+
T Consensus        76 ~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~i~~~~~~  153 (467)
T PRK09556         76 TYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFG-ASLGSGSVSLGLM-IALWALSGFFQSTGGPCSYSTITRWTPR  153 (467)
T ss_pred             HHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHH-HHHhcccchHHHH-HHHHHHHHHHHhccchHHHHHHHHHcCc
Confidence            4678899999999999999999988888777776665 4     4778766 5569999999999999999999999987


Q ss_pred             c-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhh---CcHHHHHHHHHHHHHHHHHHh
Q psy6058          78 K-RTLATSLGACGTGIGTFVYAPLTQYWIEEY---GWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        78 ~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~---gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      + ||+++|++..+..+|.++++.+..++....   +|+..|.+.+++.++..+..+
T Consensus       154 ~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~  209 (467)
T PRK09556        154 RKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGL  209 (467)
T ss_pred             cceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHH
Confidence            4 999999999999999999999887776653   699988887766555544433

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.52  E-value=1.3e-13  Score=116.26  Aligned_cols=118  Identities=21%  Similarity=0.087  Sum_probs=96.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---c-----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---N-----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYW   74 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~-----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~   74 (235)
                      .+++++++.|+++||+|||++++.+.++..++.+... ++   +     +++.+ ++.|++.|++.+...+....++.++
T Consensus        63 ~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~~~~~  140 (399)
T PRK05122         63 ATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYL-LAGLLAAWPVLSLLLL-LLGRLLLGIGESLAGTGSILWGIGR  140 (399)
T ss_pred             HHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHH-HhhhhhccchhHHHHH-HHHHHHHHhhHHhhcchHHHHHHhh
Confidence            4578899999999999999999999988877665544 32   2     34434 5669999999999888888888887


Q ss_pred             ccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHH
Q psy6058          75 FDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFL  122 (235)
Q Consensus        75 ~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~  122 (235)
                      .|+ +|+++.++...+..+|..+++.+++.+.+.+||++.+++.+++.+
T Consensus       141 ~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~  189 (399)
T PRK05122        141 VGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLAL  189 (399)
T ss_pred             cChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            765 599999999999999999999999999999999998876555443

>PRK12382 putative transporter; Provisional

Probab=99.51  E-value=3.3e-13  Score=113.53  Aligned_cols=116  Identities=16%  Similarity=0.080  Sum_probs=93.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--h-----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--V-----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF   75 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~-----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~   75 (235)
                      .+.++++++|+++||+|||++++.+.+...++.+....  .     ..+++.+ ++.|++.|++.+...+....++.+++
T Consensus        63 ~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~~~~~~  141 (392)
T PRK12382         63 ATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALL-VVGRLILGFGESQLLTGALTWGLGLV  141 (392)
T ss_pred             HHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            45678999999999999999999988877666543220  1     2355545 56699999999988888888888887


Q ss_pred             cc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058          76 DK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG  119 (235)
Q Consensus        76 ~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~  119 (235)
                      |+ +|++++++...+..+|..++|.+++.+.+.+||++.+.+..+
T Consensus       142 ~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~  186 (392)
T PRK12382        142 GPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMV  186 (392)
T ss_pred             CccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence            65 599999999999999999999999999999999987665443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=99.50  E-value=2.4e-13  Score=117.31  Aligned_cols=123  Identities=20%  Similarity=0.226  Sum_probs=105.3

Q ss_pred             cccchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc----
Q psy6058           3 VPLLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK----   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~----   77 (235)
                      .+.++++++|+++|| +|||++++++.++.+++.++.+ ++++.+.+ ...+++.|+|.|...+.....+++++|+    
T Consensus        60 ~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~-~~~~~~~~-~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~  137 (475)
T TIGR00924        60 LVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA-MSIYPDLI-FYGLGTIAVGSGLFKANPSSMVGKLYERGDMP  137 (475)
T ss_pred             HHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH-hcccHhHH-HHHHHHHHhccccccCCHHHHHHHhcCCCCcc
Confidence            457889999999999 8999999999999999999998 88777655 4458889999999889999999998864    


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +|+++.++++.+.++|.+++|.+++++.+++||++.|++.++..++..+.
T Consensus       138 ~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~  187 (475)
T TIGR00924       138 RRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLT  187 (475)
T ss_pred             cccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence            28889999999999999999999999999999999999877554444333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=99.50  E-value=4.1e-13  Score=113.80  Aligned_cols=124  Identities=15%  Similarity=0.053  Sum_probs=102.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV---ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      .+.+++++.|++.||+|||++++++.++++++.+++. .   .++++.+ +..|++.|+|.|...+....++.+..|++ 
T Consensus        50 g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~-~~~~~~~~~~~-l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~  127 (410)
T TIGR00885        50 GYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFW-PAAEIMNYTLF-LVGLFILTAGLGFLETAANPYILVMGPEST  127 (410)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HHHhhccHHHH-HHHHHHHHhhHHHHHhhhhHHHHHHCCHhH
Confidence            5678899999999999999999999999999988865 3   3567655 66699999999999999999998887664 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHh--------------------------hhCcHHHHHHHHHHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIE--------------------------EYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~--------------------------~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      |++..++.+.+..+|..++|.+.+.+..                          ..+||++|++.+++.++..++.
T Consensus       128 ~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       128 ATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887742                          2469999988887655544443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=99.48  E-value=5.1e-13  Score=114.15  Aligned_cols=123  Identities=15%  Similarity=0.187  Sum_probs=100.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      +..+++++.|+++||+|||+++.++.++.+++.++.. ..    .+++.+ .+.|++.|++.+..++.....+.+++|+ 
T Consensus        73 ~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~l~g~~~g~~~~~~~~~i~~~~~~~  150 (438)
T TIGR00712        73 AYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMG-FVPWATSSIAIM-FVLLFLNGWFQGMGWPPCGRTMVHWWSQS  150 (438)
T ss_pred             HHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHh-ccccccchHHHH-HHHHHHHHHHhhcchHHHHHHHHHhcCcc
Confidence            4568899999999999999999999999888888776 54    345444 4558999999998888888888999976 


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHHHHHHHH
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +|++++++++.+..+|+.+++.+.+...+ ..+||+.|++.+++.++..+.
T Consensus       151 ~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~  201 (438)
T TIGR00712       151 ERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALF  201 (438)
T ss_pred             cchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999888776544 569999999888766554444

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.48  E-value=6.1e-13  Score=114.13  Aligned_cols=123  Identities=13%  Similarity=0.134  Sum_probs=96.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      .+++++++.|+++||+|||++++++.++.+++.++++ +.+    +++.+ +..|++.|++.+..++.....+.+++|++
T Consensus        75 ~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~-~~~~~~~~~~~~-~~~~~l~gi~~g~~~~~~~~~~~~~~~~~  152 (452)
T PRK11273         75 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVM-FVLLFLCGWFQGMGWPPCGRTMVHWWSQK  152 (452)
T ss_pred             HHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHH-hhhcccccHHHH-HHHHHHHHHHHhccchHHHHHHHHhCChH
Confidence            4678999999999999999999999999998888887 543    55544 55589999999888887778888888775


Q ss_pred             -hhHHHHHHHhhHHHHHHH-HHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          79 -RTLATSLGACGTGIGTFV-YAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        79 -rg~~~~~~~~~~~~g~~l-~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                       |+++.++++.+..+|..+ +|.+...+....+||+.|++.+++.++..++
T Consensus       153 ~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l  203 (452)
T PRK11273        153 ERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALF  203 (452)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence             999999999999988755 4444333434459999999877765554333

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.48  E-value=1.3e-12  Score=117.29  Aligned_cols=125  Identities=15%  Similarity=0.049  Sum_probs=101.6

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      +..++.+++|+++||+|||++++++.++.++++++.+ +.++...+ ++.+++.|++.+..++....+++|++|.+ |++
T Consensus       607 ~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~-~~~s~~~l-l~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgt  684 (742)
T TIGR01299       607 AVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS-FGNSESAM-IALLCLFGGLSIAAWNALDVLTVELYPSDKRAT  684 (742)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HHccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence            3467889999999999999999999999999998888 77776655 44477778888888888889999999886 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      ++|+..+...+|.+++|.+++.+.+. +...+|++.+++.++..++.++
T Consensus       685 a~Gi~~~~~rlGaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~~~  732 (742)
T TIGR01299       685 AFGFLNALCKAAAVLGILIFGSFVGI-TKAAPILFASAALACGGLLALK  732 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999888764 4556666666655554444443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10054 putative transporter; Provisional

Probab=99.48  E-value=7.6e-13  Score=111.67  Aligned_cols=122  Identities=16%  Similarity=0.124  Sum_probs=100.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      .+.+++++.|+++||+|||++++++.++..++.++.. +.++++.+ ++.+.+.|.+.+...+....+..+..|+ +|++
T Consensus        55 ~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  132 (395)
T PRK10054         55 IGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIP-LVNNVTLV-VLFFALINCAYSVFSTVLKAWFADNLSSTSKTK  132 (395)
T ss_pred             HHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHH-HHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHH
Confidence            3567889999999999999999999999999988888 88888755 4457777777776677777888887766 4999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +.++......+|.+++|.+++.+.+ .+|+..|++.+++.++..++
T Consensus       133 ~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i~~i~  177 (395)
T PRK10054        133 IFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHHHHHH
Confidence            9999999999999999999998875 79999999877665554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=99.47  E-value=3.2e-13  Score=117.44  Aligned_cols=130  Identities=18%  Similarity=0.255  Sum_probs=102.7

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ..++.++.|+++|.||||++++++.++..+|.++.+ .++|...+ +++..+.|+|.|.... ....++|..|.+ |+..
T Consensus        91 ~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~a-tA~~~~~~-iag~~l~GvgaG~~~~-~~~~isEl~p~k~R~~~  167 (599)
T PF06609_consen   91 SAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCA-TAQNMNTF-IAGMVLYGVGAGVQEL-AALAISELVPNKWRGLG  167 (599)
T ss_pred             HHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhh-cCCcHHHH-HHHHHHHHHhhHHHHH-HHHHHHHhcccchhhhH
Confidence            467889999999999999999999999999999999 99999866 7778999999877654 345578888776 8888


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH-HhhccCCch
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC-GALMKDPEW  136 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~-~~~~~~~~~  136 (235)
                      .++......+....++.++..+..+.+|||.|++.+++..+.++. .+++++|++
T Consensus       168 ~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~~  222 (599)
T PF06609_consen  168 LAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPPR  222 (599)
T ss_pred             hHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCch
Confidence            777776666666677777777766779999999988765555444 445555554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.47  E-value=1.2e-12  Score=109.18  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=94.5

Q ss_pred             ccchhhhhHHHhhhhchhHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTIL-GGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ..+.+++.|+++||+|||+.++. +.++..++.++.. ++++++.+ ++.|++.|.+.+...+....+..++.|++ |+.
T Consensus        46 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~  123 (375)
T TIGR00899        46 GIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFA-WNRNYFLL-LVLGVLLSSFASTANPQLFALAREHADRTGREA  123 (375)
T ss_pred             HHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHH-hcchHHHH-HHHHHHHHhhhhhhHHHHHHHHHHHhhhcchhh
Confidence            45678999999999999887654 5555566777777 88888866 44588888777666777777777877654 554


Q ss_pred             H--HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 A--TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~--~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +  .+....+..+|..++|.+++.+.+.+|||+.|++.+++.++..+..
T Consensus       124 ~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~  172 (375)
T TIGR00899       124 VMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLV  172 (375)
T ss_pred             HHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            3  5777888899999999999999999999999999887655554443

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=99.46  E-value=1.5e-12  Score=110.72  Aligned_cols=125  Identities=16%  Similarity=0.157  Sum_probs=95.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      .+.++.++.|++.||+|.|+++.++.++..+.++..+ ++     ++++.+ ++.|++.|++ +..++.....+++|||+
T Consensus        82 ~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~-~a~~~~~~s~~~l-li~r~l~Gig-g~~f~~~~~~vs~wfp~  158 (462)
T PRK15034         82 SGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLG-IAVQNPNTPFGIF-IVIALLCGFA-GANFASSMGNISFFFPK  158 (462)
T ss_pred             HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHH-HHHHHHHHHH-HHhHHHHHHHHHHHCCH
Confidence            3456778889999999999999999999999999888 76     788866 5559999997 67889999999999988


Q ss_pred             c-hhHHHHHHHhhHHHHHHHHHHHHHHHH-----h-------------hhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          78 K-RTLATSLGACGTGIGTFVYAPLTQYWI-----E-------------EYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        78 ~-rg~~~~~~~~~~~~g~~l~~~~~~~~~-----~-------------~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      + ||++.|+......+|..+++.+...+.     .             ..+|+.++++..++.++..++.++
T Consensus       159 ~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~  230 (462)
T PRK15034        159 AKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWS  230 (462)
T ss_pred             hHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6 999999997666667666555544432     2             234777777777666555555443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=99.44  E-value=1.7e-12  Score=112.70  Aligned_cols=118  Identities=19%  Similarity=0.238  Sum_probs=96.3

Q ss_pred             hhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc---hhHH
Q psy6058           7 LGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK---RTLA   82 (235)
Q Consensus         7 ~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~---rg~~   82 (235)
                      ..+++|+++|| +|||+.++++.++..++.+++. ++++...++.+.+++.|++.|...+....++.+++|++   |..+
T Consensus        73 ~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~-~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~  151 (500)
T PRK09584         73 LVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVA-WSGHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGA  151 (500)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-HhcccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhc
Confidence            35689999999 5999999999999999988888 66433223355588889999988888888999998753   4457


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC  125 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~  125 (235)
                      .++++.+..+|.+++|.+.+++.+++|||+.|++.++..++..
T Consensus       152 ~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~  194 (500)
T PRK09584        152 FTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITV  194 (500)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHH
Confidence            8888999999999999999999999999999998765444433

>TIGR00896 CynX cyanate transporter

Probab=99.43  E-value=3.3e-12  Score=106.07  Aligned_cols=117  Identities=18%  Similarity=0.187  Sum_probs=97.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      .+.+++++.|+++||+|||+++.++.++..++.+..  ..++.+.+ ++.|++.|++.+...+.....+.+++|++|+++
T Consensus        47 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~--~~~~~~~l-~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~  123 (355)
T TIGR00896        47 CFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR--SAPGTALL-FAGTALIGVGIAIINVLLPSLIKRDFPQRVGLM  123 (355)
T ss_pred             HHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH--HhccHHHH-HHHHHHHHHHHHHHhccchHHHHHhCcchhhHH
Confidence            457889999999999999999999988877776655  35666655 566999999999888778888889998889999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhh--CcHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEY--GWRGTILLLAGTFL  122 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~--gw~~~~~~~~~~~~  122 (235)
                      .+++..+..+|..+++.+.+.+.+..  +||+.|.+.++..+
T Consensus       124 ~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~  165 (355)
T TIGR00896       124 TGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPAL  165 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            99999999999999999988887765  39988877665433

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK10133 L-fucose transporter; Provisional

Probab=99.43  E-value=3.9e-12  Score=108.74  Aligned_cols=101  Identities=15%  Similarity=0.042  Sum_probs=86.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      .+++++++.|+++||+|||+++.++.+++.++.+++   . .+++++.+ ++.|++.|+|.+...+..+.++.++.|++ 
T Consensus        73 g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~-~a~~~~~l-l~~r~l~G~g~g~~~~~~~~~v~~~~~~~~  150 (438)
T PRK10133         73 GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLF-LVGLFIIAAGLGCLETAANPFVTVLGPESS  150 (438)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHH-hcCCHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhCChhh
Confidence            567899999999999999999999999999998775   4 56788766 56699999999999999999998887665 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWI  105 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~  105 (235)
                      |....++.+..+.+|..+++.+++.+.
T Consensus       151 ~~~~~s~~~~~~~~G~~~g~~~g~~l~  177 (438)
T PRK10133        151 GHFRLNLAQTFNSFGAIIAVVFGQSLI  177 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556789999999999999998876544

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.43  E-value=1.8e-12  Score=122.84  Aligned_cols=125  Identities=14%  Similarity=0.043  Sum_probs=95.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHH---HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTIL---GGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      .+.++++++|+++||+|||+++..   +.++.++..+... ..++++.+ +++|++.|++.+...+...+++.+++|++ 
T Consensus        64 ~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~-~~~s~~~l-~~~~~l~gi~~a~~~p~~~a~l~~~~~~~~  141 (1140)
T PRK06814         64 PFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGF-HLNSVPLL-FAALFLMGIHSALFGPIKYSILPDHLNKDE  141 (1140)
T ss_pred             HHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHHHHHHHHHHHhhchHHHHhhHhhcCccc
Confidence            356788999999999999997533   2222222222222 34778766 55699999999999999999999988764 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      |++++|+.+++..+|.++||.+++++....+|++.|+..+++.++.+++.+
T Consensus       142 ~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  192 (1140)
T PRK06814        142 LLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASL  192 (1140)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998444444444444333

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=99.42  E-value=2.5e-12  Score=110.49  Aligned_cols=120  Identities=19%  Similarity=0.226  Sum_probs=93.2

Q ss_pred             ccchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc---c
Q psy6058           4 PLLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK---K   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~---~   78 (235)
                      ..++++++|+++||+ |||+++++|.++..++.++.. ... +...+ .....+.++|.|...+...+++++.+|+   +
T Consensus        58 ~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~-~~~~~~~~~-~l~l~li~iG~G~~~~~~~alv~elfp~~~~~  135 (493)
T PRK15462         58 VYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLG-ASEIHPSFL-YLSLAIIVCGYGLFKSNVSCLLGELYEPTDPR  135 (493)
T ss_pred             HHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHH-HhhcchhHH-HHHHHHHHHhcccccccHHHHHHHHCCCCCcc
Confidence            467888999999999 999999999999999987766 443 22222 2223344566666667777889998875   3


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC  125 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~  125 (235)
                      |.++.++.+.+..+|++++|.+.+++.+.+||++.|.+.++..++.+
T Consensus       136 R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~l  182 (493)
T PRK15462        136 RDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGL  182 (493)
T ss_pred             ccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999988665443333

>TIGR00889 2A0110 nucleoside transporter

Probab=99.42  E-value=6.1e-12  Score=106.96  Aligned_cols=124  Identities=16%  Similarity=0.243  Sum_probs=98.7

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-hH--HHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-SI--EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~--~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      .++.++.|+++||+|+|+++.++.++..++..+.. ... +.  ..++++..++.|++.+...+....++.+.+|++ |+
T Consensus       265 i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~-~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~~~p~~~~g  343 (418)
T TIGR00889       265 IFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA-YGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEKEVPVHIRA  343 (418)
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            45678899999999999999999999888877666 532 22  123344588889998888888888999998875 99


Q ss_pred             HHHHHHH-hhHHHHHHHHHHHHHHHHhh------hCcHHHHHHHHHHHHHHHHHHh
Q psy6058          81 LATSLGA-CGTGIGTFVYAPLTQYWIEE------YGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        81 ~~~~~~~-~~~~~g~~l~~~~~~~~~~~------~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ++.|+.+ ....+|.+++|.+++.+.++      +||+..|++.+++.++..++.+
T Consensus       344 ~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~  399 (418)
T TIGR00889       344 SAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFM  399 (418)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHH
Confidence            9999997 67889999999999999987      4699999887776655555543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.42  E-value=1.3e-12  Score=110.87  Aligned_cols=125  Identities=17%  Similarity=0.101  Sum_probs=100.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH----hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT----VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      .+.+++++.|+++||+|||+++..+.++.+++.+....    ..++++.+ .+.|++.|++.+...+....++.++.|++
T Consensus        64 ~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  142 (417)
T PRK10489         64 AMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAI-YLLGLWDGFFGSLGVTALLAATPALVGRE  142 (417)
T ss_pred             HHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHH-HHHHHHHHHHHHHHHHHHhhhhhhccCHH
Confidence            45678999999999999999998888777776655431    13556645 55699999988888788888888888765


Q ss_pred             -hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          79 -RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        79 -rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                       |+++.++......+|..++|.+++.+.+..+|++.|++.++..++..++.
T Consensus       143 ~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~  193 (417)
T PRK10489        143 NLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPL  193 (417)
T ss_pred             HHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence             99999999999999999999999999998999999988776555444443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=99.41  E-value=6.6e-12  Score=105.86  Aligned_cols=125  Identities=16%  Similarity=0.098  Sum_probs=103.4

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ..++.++.|++.||+|+|+.+..+.++..++.++.. ..++.+.+ +...++.|++.+..++.....+.+..|++ ||++
T Consensus       262 ~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~g~~  339 (399)
T PRK05122        262 FVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW-LAPSPWMA-LIGAALTGFGFSLVFPALGVEAVKRVPPQNRGAA  339 (399)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            456788999999999999999988888888888777 77777655 45578889999888887777777777664 9999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      .++++....+|..+++.+.+.+.+..||++.+++.+++.++.+++.++
T Consensus       340 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (399)
T PRK05122        340 LGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWL  387 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999877766665555443

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.40  E-value=1e-11  Score=104.62  Aligned_cols=125  Identities=10%  Similarity=0.103  Sum_probs=97.5

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATS   84 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~   84 (235)
                      .++.++.|+++||+|||+.+..+.....+...... ..++.+.+ +..+++.+++.+...+....+..+.+|++||++.+
T Consensus       266 i~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-l~~~~l~~~~~g~~~~~~~~~~~~~~p~~~g~~~~  343 (393)
T PRK15011        266 IPTMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGML-MAHSPAIL-LGLQLLNAIYIGILGGIGMLYFQDLMPGQAGSATT  343 (393)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchHHH
Confidence            45678999999999999988877666555555444 55666544 44577777777776666677788888988999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          85 LGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        85 ~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      +++....+|..++|.+++.+.+.+||+..|++.+++.++.++..+..
T Consensus       344 ~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        344 LYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            99888999999999999999999999999988776666655554443

>TIGR00897 2A0118 polyol permease family

Probab=99.40  E-value=5.7e-12  Score=106.55  Aligned_cols=116  Identities=15%  Similarity=0.099  Sum_probs=90.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--h-hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-cc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--V-ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD-KK   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~-~~   78 (235)
                      .+.++.++.|+++||+|||+++..+.++..++.++...  . ..+++.+ +..|++.|++.+...+.....+.+++| ++
T Consensus        60 ~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~  138 (402)
T TIGR00897        60 AAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLI-LLFYGIRGLGYPLFAYSFLVWVVYNTKQDN  138 (402)
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHH-HHHHHHHHcchHHHHhHHHHHHHHhCCHHH
Confidence            45788999999999999999999999988888665420  2 2456555 556999999888777777777777654 46


Q ss_pred             hhHHHHHHHhhHHHHH-HHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGT-FVYAPLTQYWIEEYGWRGTILLLAG  119 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~-~l~~~~~~~~~~~~gw~~~~~~~~~  119 (235)
                      |++++|+.+.+..+|. .++|.+++.+.+.+||+..++....
T Consensus       139 ~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~  180 (402)
T TIGR00897       139 LSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALA  180 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence            9999999999999996 5789988898888897766554443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.39  E-value=9.1e-12  Score=104.51  Aligned_cols=106  Identities=14%  Similarity=0.065  Sum_probs=91.1

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~   81 (235)
                      .+.+++++.|+++||+|||+++..+.++..++.++.. ++++++.+ ++.|++.|++.+...+.....+.+.. +++|++
T Consensus        53 ~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~  130 (381)
T PRK03633         53 GNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG-LMVGFWSW-LAWRFVAGIGCAMIWVVVESALMCSGTSRNRGR  130 (381)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            4578899999999999999999999999999999988 88998866 55699999999988887777676655 446999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                      +.+++..+..+|..++|.+.+.+.+...|
T Consensus       131 ~~~~~~~~~~~g~~~g~~~~~~l~~~~~~  159 (381)
T PRK03633        131 LLAAYMMVYYLGTVLGQLLVSKVSTELMS  159 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence            99999999999999999999988765433

>TIGR00805 oat sodium-independent organic anion transporter

Probab=99.39  E-value=1.3e-12  Score=116.17  Aligned_cols=124  Identities=20%  Similarity=0.194  Sum_probs=102.6

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc---------------------------------------
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN---------------------------------------   43 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---------------------------------------   43 (235)
                      .++++.++.+++.||+|||+++.+|.++++++.++++ +.+                                       
T Consensus        80 ~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~a-lphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~  158 (633)
T TIGR00805        80 GNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLS-LPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQC  158 (633)
T ss_pred             HHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHh-ChHHhcCCccccccccccccccccccccccCCCCCCcccccc
Confidence            4578889999999999999999999999999999887 653                                       


Q ss_pred             ----------h-HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhh---
Q psy6058          44 ----------S-IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEY---  108 (235)
Q Consensus        44 ----------~-~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~---  108 (235)
                                + .+.++++.|++.|+|.+..++....++.|++|++ |+.+.+++..+..+|.++|+.+++++.+.+   
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~  238 (633)
T TIGR00805       159 PSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDT  238 (633)
T ss_pred             ccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhccccc
Confidence                      1 2334466799999999999999999999998775 999999999999999999999999887543   


Q ss_pred             -------------------CcHHHHHHHHHHHHHHHHH
Q psy6058         109 -------------------GWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus       109 -------------------gw~~~~~~~~~~~~~~~~~  127 (235)
                                         +|+..|++.+++.++..+.
T Consensus       239 ~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l~~v~  276 (633)
T TIGR00805       239 GSVNTEDVILTPTDPRWIGAWWIGFLICGGVALLTSIP  276 (633)
T ss_pred             ccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence                               2666777777665554443

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>PRK12382 putative transporter; Provisional

Probab=99.39  E-value=8.5e-12  Score=104.99  Aligned_cols=125  Identities=19%  Similarity=0.171  Sum_probs=104.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~   82 (235)
                      ..+++++.|++.||+|+|+.+.++..+..++.++.. ..++.+.+ +...++.|++.+...+.....+.+.+|+ +||++
T Consensus       262 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~  339 (392)
T PRK12382        262 FVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLW-LAPTAWVA-LAGAALTGAGCSLIFPALGVEVVKRVPSQVRGTA  339 (392)
T ss_pred             HHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHH-HcccHHHH-HHHHHHHHHHHHhHHHHHHHHHHHhcCHHHHHHH
Confidence            356788999999999999999999988888888777 77776644 4457888998888888777777777655 59999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      .++++....+|..++|.+.+.+.++.||++.|.+.+++.++..+..+.
T Consensus       340 ~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  387 (392)
T PRK12382        340 LGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTIL  387 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999888776666555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.37  E-value=2e-11  Score=105.91  Aligned_cols=123  Identities=13%  Similarity=0.186  Sum_probs=99.5

Q ss_pred             chhhhhHHHhhhh-----chhHH-HHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           6 LLGPVASSFVDKY-----GCRWM-TILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         6 i~~~~~g~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      ++.+++|+++||+     |||+. ++++.+..+++...++ +.   .+++.+ ...+++.|++.+...++..+++.+++|
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a-~~~~~~~l~~l-~~~~~l~~~~~a~~~i~~~a~~~~~~~  137 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG-FLEPGTQLRWL-AALAVVIAFCSASQDIVFDAWKTDVLP  137 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH-HcCCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6789999999999     99885 6677777777777766 54   355544 445888899888888888899999997


Q ss_pred             c-chhHHHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          77 K-KRTLATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        77 ~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      + +|+++.++...++.+|..+++.+..++.+ ..|||..|++.+++.++..+..++
T Consensus       138 ~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~  193 (491)
T PRK11010        138 AEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL  193 (491)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh
Confidence            5 59999999999999999999999999988 479999999988766555444443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.37  E-value=1.3e-11  Score=105.00  Aligned_cols=123  Identities=17%  Similarity=0.233  Sum_probs=101.4

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ..++.+++|++.||+|+|+.+.++.++..++.++.. +.++.+.+ +..+++.|++.+...+....++.+.+|++ +++.
T Consensus       275 ~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~a~~  352 (420)
T PRK09528        275 EALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG-FATGPLEV-SILKLLHAFEVPFLLVGVFKYITLNFDVRLSATI  352 (420)
T ss_pred             HHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH-hcccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCccceeee
Confidence            357888999999999999999999999888888888 88888755 55588888888877777778888887775 7777


Q ss_pred             HHH-HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          83 TSL-GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        83 ~~~-~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      .+. ++.+..+|.+++|.+.+.+.+.+||+..|.+.+++.++..++.
T Consensus       353 ~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~  399 (420)
T PRK09528        353 YLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLIS  399 (420)
T ss_pred             eeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHH
Confidence            655 6777889999999999999999999999998777665554443

>KOG0253|consensus

Probab=99.36  E-value=1.5e-12  Score=105.31  Aligned_cols=143  Identities=16%  Similarity=0.137  Sum_probs=116.6

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      +.+.+++..+|.++|++|||+...+.....++...+.+ .++|+..+ +.+|.+.|+|.|+ .+...++-.+.-|. +|.
T Consensus       124 ~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~-~spnf~~L-~~f~~l~~~g~gg-~pv~~~~yle~lp~~~r~  200 (528)
T KOG0253|consen  124 LGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISG-ASPNFASL-CVFRALWGFGVGG-LPVDSAIYLEFLPSSHRW  200 (528)
T ss_pred             hhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhc-CCCCeehh-hHHHHHHhccCCC-ccHhHHHHHHhccCcCCC
Confidence            35678999999999999999999999999999989999 89999877 5559999999988 67666766777666 577


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH-HHHHHHHHHhhccCCchhHhhhhhcCCCC
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG-TFLQMCICGALMKDPEWWIREQKRLQNPT  148 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (235)
                      .-+=+. ..+.+|.++...++-..+.++||||.+...+. +.+.+..+.+.+|+|+++..+++++++.+
T Consensus       201 ~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAle  268 (528)
T KOG0253|consen  201 LLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALE  268 (528)
T ss_pred             cchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHH
Confidence            665555 88999999999998888999999998887775 44445555677899999988887776655

>TIGR00899 2A0120 sugar efflux transporter

Probab=99.36  E-value=2.7e-11  Score=100.97  Aligned_cols=123  Identities=11%  Similarity=0.141  Sum_probs=99.2

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATS   84 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~   84 (235)
                      .++.++.|++.||+|||+.+.++.++..+..+... ..++.+.+ +...++.|++.+...+....++.+.+|++++++.+
T Consensus       249 ~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~  326 (375)
T TIGR00899       249 IPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLA-ADNSLWAL-LMLQLLNAIFIGILAGIGMLYFQDLMPGRAGAATT  326 (375)
T ss_pred             HHHHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence            34567889999999999998888776666655555 55666645 44577888888887777778888888888889999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          85 LGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        85 ~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +++....+|..++|.+.+.+.+..||+..|++.+++.++..++..
T Consensus       327 ~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  371 (375)
T TIGR00899       327 LYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLL  371 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999988877666555543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.34  E-value=1.4e-11  Score=116.69  Aligned_cols=104  Identities=14%  Similarity=0.032  Sum_probs=87.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      .+.++++++|+++||+|||++++++.++.+++.++..+  ..++++.+ ++.|++.|++.+...+...+++.+++|++ |
T Consensus        59 ~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r  137 (1146)
T PRK08633         59 PFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLA-FAVTFLLGAQSAIYSPAKYGIIPELVGKENL  137 (1146)
T ss_pred             HHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHH-HHHHHHHHHHHHhhchHHHhhhHHhcCcccc
Confidence            35688899999999999999999888766555544430  34666655 56699999999999999999999998765 9


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEE  107 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~  107 (235)
                      ++++++..++..+|.++++.+++++.+.
T Consensus       138 ~~~~~~~~~~~~ig~~lg~~l~~~l~~~  165 (1146)
T PRK08633        138 SRANGLLEAFTIVAILAGTALFSFLFES  165 (1146)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999998876

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=99.33  E-value=5.4e-11  Score=100.58  Aligned_cols=121  Identities=15%  Similarity=0.216  Sum_probs=96.5

Q ss_pred             cchhhhhHHHhhhh-----chhH-HHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058           5 LLLGPVASSFVDKY-----GCRW-MTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF   75 (235)
Q Consensus         5 ~i~~~~~g~l~dr~-----G~r~-~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~   75 (235)
                      .+..+++|+++||+     |||+ .++++.++.+++..... +.   .+++.+ ....++.++..+...++..+++.+++
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~-~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~al~~~~~  123 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA-FCPPHAALWPL-AGLAVLVAFLSASQDIVFDAYSTDVL  123 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH-hcCccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999     7765 67788888877777776 55   345544 44456667778888888889999998


Q ss_pred             ccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhh-hCcHHHHHHHHHHHHHHHHH
Q psy6058          76 DKK-RTLATSLGACGTGIGTFVYAPLTQYWIEE-YGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        76 ~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~  127 (235)
                      |++ |+++.++...+..+|..+++.+...+.+. .|||..|++.+++.++..+.
T Consensus       124 ~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~  177 (402)
T PRK11902        124 HPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALT  177 (402)
T ss_pred             ChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHH
Confidence            876 99999999999999999999999998886 59999999888765544443

>TIGR00901 2A0125 AmpG-related permease

Probab=99.32  E-value=6.3e-11  Score=98.38  Aligned_cols=120  Identities=10%  Similarity=0.026  Sum_probs=94.0

Q ss_pred             hhhhHHHhhhh-----chhHH-HHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           8 GPVASSFVDKY-----GCRWM-TILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         8 ~~~~g~l~dr~-----G~r~~-~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      .+++|+++||+     |||+. ++.+.++.+++.+..+ +.   .+.+.+ ....++.+++.+...++..+++.+++|+ 
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~-~~~~~~~l~~l-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  115 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS-FLVPSTDLPLL-AGLAFLIAFFSATQDIALDAWRLEILSDE  115 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH-cCCcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHh
Confidence            88999999998     88886 4566777777766666 55   344434 3335666777777888888999999866 


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC--------cHHHHHHHHHHHHHHHHHHh
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG--------WRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g--------w~~~~~~~~~~~~~~~~~~~  129 (235)
                      +|+++.++...+..+|.++++.+++.+....|        ||..|++.+++.++..+..+
T Consensus       116 ~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~  175 (356)
T TIGR00901       116 ELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTL  175 (356)
T ss_pred             hhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999988888        99999888776555444433

>PRK15011 sugar efflux transporter B; Provisional

Probab=99.31  E-value=4.7e-11  Score=100.65  Aligned_cols=120  Identities=17%  Similarity=0.058  Sum_probs=84.2

Q ss_pred             chhhhhHHHhhhhchhHHHH-HHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h--hH
Q psy6058           6 LLGPVASSFVDKYGCRWMTI-LGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R--TL   81 (235)
Q Consensus         6 i~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r--g~   81 (235)
                      ++.+++++ .||+|||+.++ .+.++..++.++.+ ++++++.+++. +.+.|...+...+....++.++.+++ |  +.
T Consensus        67 ~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (393)
T PRK15011         67 VSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFA-WNRNYFVLLFV-GVFLSSFGSTANPQMFALAREHADKTGREAVM  143 (393)
T ss_pred             HHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHH-HhhHHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHhhhccchHHH
Confidence            34444455 99999998754 55555567777777 78888866445 44444334455566666666766543 4  34


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      ..++.+.+..+|.+++|++++.+.+++|||..|++.++..++..+..
T Consensus       144 ~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~  190 (393)
T PRK15011        144 FSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMV  190 (393)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            45788888999999999999999999999999998877655554443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=99.31  E-value=2.4e-11  Score=102.56  Aligned_cols=123  Identities=16%  Similarity=0.108  Sum_probs=101.7

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLAT   83 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~   83 (235)
                      .++.++.|+++||+|||+.+..+.++..++.+... ..++.+.+ .+.+++.|++.+...+.....+.+..|+ ++|+..
T Consensus       272 ~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  349 (408)
T PRK09874        272 LLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMS-FVQTPLQL-GILRFLLGAADGALLPAVQTLLVYNSSNQIAGRIF  349 (408)
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHhhhHhhHHHHHHHHHHhCCcccceeee
Confidence            45667789999999999999998888887777776 66776655 4557888999988888888877776665 499999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ++++....+|..++|.+++.+.+..||+..|++.+++.++..+..+
T Consensus       350 ~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  395 (408)
T PRK09874        350 SYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSW  395 (408)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988877766655544

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=99.30  E-value=5.1e-11  Score=97.85  Aligned_cols=125  Identities=20%  Similarity=0.243  Sum_probs=108.7

Q ss_pred             cccchhhhhHHHhhhhchhH-HHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058           3 VPLLLGPVASSFVDKYGCRW-MTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~-~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      ...++.++.+++.||+|||+ .+..+.++..++.+... ..++.+.. ....++.|++.+...+....++.+..|+ +|+
T Consensus       223 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  300 (352)
T cd06174         223 GGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA-LAPSLALL-LVALLLLGFGLGFAFPALLTLASELAPPEARG  300 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHhccchhHHHHHHhhcCHHHHH
Confidence            34678899999999999999 99999999999999888 77776655 4558888999999999999999998875 599


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +..++......+|..++|.+.+.+.+..+|+..+++.+++.++..+..+
T Consensus       301 ~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~  349 (352)
T cd06174         301 TASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLL  349 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHhe
Confidence            9999999999999999999999999999999999988887766665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=99.30  E-value=3e-11  Score=100.29  Aligned_cols=120  Identities=10%  Similarity=-0.003  Sum_probs=96.8

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA-QYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ..+++++.|++.||+|||+.+.++.++..++.++.. ..++... .++...++.|++.+...+..+.++.+.+|++ |++
T Consensus       253 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~  331 (377)
T TIGR00890       253 NGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAML-FIPMLNDVLFLATVALVFFTWGGTISLFPSLVSDIFGPANSAA  331 (377)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH-HcccchhHHHHHHHHHHHHHhccchhccHHHHHHHhhhhhhhh
Confidence            457889999999999999999999888888887776 5553321 2233356678877777777778888888765 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM  124 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~  124 (235)
                      +.|+.+....+|..++|.+.+.+.++.||++.|.+.+++.++.
T Consensus       332 ~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       332 NYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998877655543

>PRK03893 putative sialic acid transporter; Provisional

Probab=99.29  E-value=7e-11  Score=102.42  Aligned_cols=117  Identities=11%  Similarity=-0.074  Sum_probs=84.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      +..++.++.|+++||+|||++++.+.++..++.++.. ..  .+.+.+ ....++.++......+..+.++.+.+|++ |
T Consensus       323 ~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (496)
T PRK03893        323 GAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVF-AIGGANVWVL-GLLLFFQQMLGQGISGLLPKLIGGYFDTEQR  400 (496)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHh-hccccHHHHH-HHHHHHHHHHhcccchhhHHHHHhhCCHHHh
Confidence            3467889999999999999998888776666554443 32  222222 22233333333233455667788888775 9


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHH
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTF  121 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~  121 (235)
                      +++.++.+....+|..++|.+.+.+.+++||+..+...++..
T Consensus       401 g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~  442 (496)
T PRK03893        401 AAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSL  442 (496)
T ss_pred             hcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            999999999999999999999999999999998876655433

>KOG0252|consensus

Probab=99.29  E-value=8.3e-12  Score=103.68  Aligned_cols=128  Identities=17%  Similarity=0.037  Sum_probs=97.1

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc------hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN------SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~------~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      +..+|++++|++.||+|||+++...+++++++.++.+ ++.      +.-+.+.++|+++|+|.|+-+|...++.+|...
T Consensus        96 Gti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~-~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE~an  174 (538)
T KOG0252|consen   96 GTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSG-LSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSESAN  174 (538)
T ss_pred             HHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhc-cCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhhhhh
Confidence            4578999999999999999999999999999998776 542      222344677999999999999999999999886


Q ss_pred             cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhh---------------hCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          77 KK-RTLATSLGACGTGIGTFVYAPLTQYWIEE---------------YGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~---------------~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      ++ ||...+...+++++|...|..++..+..-               .-||..+.+.++..+.++..-+.+
T Consensus       175 ~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M  245 (538)
T KOG0252|consen  175 KKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLKM  245 (538)
T ss_pred             hccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence            65 99999988888888877776665444321               127777766555555554444433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=99.24  E-value=2.2e-10  Score=97.27  Aligned_cols=123  Identities=8%  Similarity=-0.134  Sum_probs=98.4

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ..++.++.+++.||.++++.+..+.++..++.++.. ..++.+.+ +...++.|++.+...+....++.+..|++ ||++
T Consensus       272 ~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~  349 (417)
T PRK10489        272 AALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFG-LMPMWILA-VLCLALFGYLSAISSLLQYTLLQTQTPDEMLGRI  349 (417)
T ss_pred             HHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHH-ccchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence            456788889999998888888888888888877777 77776644 44467778888776677777888888875 9999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      .|++.....+|..++|.+.+.+.+.+|++..+++.+++.++..++.
T Consensus       350 ~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~  395 (417)
T PRK10489        350 NGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLL  395 (417)
T ss_pred             HHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888887776555444443

>PRK03545 putative arabinose transporter; Provisional

Probab=99.23  E-value=3.7e-10  Score=95.05  Aligned_cols=125  Identities=14%  Similarity=-0.000  Sum_probs=94.8

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLAT   83 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~   83 (235)
                      ..+++++.|+++||+|+|.. ..+.++..++........++.+.+ +...++.|++.+...+.....+.+..|++|+++.
T Consensus       254 ~~~g~~~~g~l~dr~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (390)
T PRK03545        254 GIIGSVLFSRLGNRHPSGFL-LIAIALLLVCLLLLLPAANSEWHL-SVLSIFWGIAIMCIGLAMQVKVLKLAPDATDVAM  331 (390)
T ss_pred             HHHHHHHHHHHhhccchhHH-HHHHHHHHHHHHHHHHHhchHHHH-HHHHHHHHHHHhcchHHHHHHHHHhCCCcHHHHH
Confidence            46788999999999998865 444444444443332145666544 4457777888776666667777788888899999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      |++.....+|..+||.+++.+.+++|++..|++.+.+.++.++....
T Consensus       332 g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~  378 (390)
T PRK03545        332 ALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSIL  378 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888776666555443

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=99.22  E-value=5.3e-11  Score=98.07  Aligned_cols=123  Identities=19%  Similarity=0.249  Sum_probs=102.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc---hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN---SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      ..+.-++.|.+.||+|.|++..++.++..+.++..+ ++.   +++++ ++.+++.|++.+ .+......++.||||+ +
T Consensus        62 GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~-~a~~~~~~~~l-l~~gll~G~~Ga-sFav~m~~~s~~fP~~~q  138 (417)
T COG2223          62 GALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLA-FAVTYPSTWQL-LVIGLLLGLAGA-SFAVGMPNASFFFPKEKQ  138 (417)
T ss_pred             hHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHH-HHccCCchHHH-HHHHHHHhcccc-eehcccccccccCChhhh
Confidence            345667899999999999999999999999999888 764   34466 555899998654 5677788999999886 9


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhC---cHHHHHHHHHHHHHHHHHHhh
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYG---WRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~g---w~~~~~~~~~~~~~~~~~~~~  130 (235)
                      |.++|++. ..++|..+...+++.+....|   |+.+..+.....++..++.++
T Consensus       139 G~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~  191 (417)
T COG2223         139 GLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWL  191 (417)
T ss_pred             hHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999 899999999999999999999   998888877766665555444

>PRK03699 putative transporter; Provisional

Probab=99.21  E-value=2.9e-10  Score=95.87  Aligned_cols=122  Identities=11%  Similarity=-0.009  Sum_probs=97.5

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLAT   83 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~   83 (235)
                      ..++.++.|+++||+++|+.+.....+..+..++.. ..++.+.+ ....++.|++.+..++....+..+..|++++...
T Consensus       254 ~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (394)
T PRK03699        254 YMVGMWIFSFIVRFFDLQRILTVLAGLALVLMYLFV-NTDDPSHL-LYAILGLGFFSSAIYTTIITLGSQQTKVASPKLV  331 (394)
T ss_pred             HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHH-HcCCchHH-HHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHH
Confidence            468899999999999999998888777777666666 66666544 3346777887777777777777777777778888


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +....+..+|..++|.+.+++.+..|++..+++.+++.++..+.
T Consensus       332 g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  375 (394)
T PRK03699        332 NFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM  375 (394)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence            88888889999999999999999999999998877766555444

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.21  E-value=1.7e-10  Score=96.90  Aligned_cols=117  Identities=13%  Similarity=-0.007  Sum_probs=84.5

Q ss_pred             cccchhhhhHHHhhhhchh----HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           3 VPLLLGPVASSFVDKYGCR----WMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r----~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      ...++++++|+++||+||+    +.+.++.++.  ...... ..++++.+ +..|++.|++.+...+...+++.++ .++
T Consensus        51 ~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l-~i~~~l~g~~~~~~~~~~~a~~~~~-~~~  125 (382)
T PRK11128         51 ARFLGSLLIAPRVKDPSQLIPALRLLALLTLLF--AVAFWF-GAHSFWLL-FVAIGLFNLFFSPLVPLTDALANTW-QKQ  125 (382)
T ss_pred             HHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHH-hcccHHHH-HHHHHHHHHHHcccccHHHHHHHHH-Hhh
Confidence            3467789999999999984    2222222221  222233 45778766 4558988988887777766666655 456


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM  124 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~  124 (235)
                      |+++.+.......+|.+++|.+++++.+++|||..|++.++..++.
T Consensus       126 ~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~  171 (382)
T PRK11128        126 IGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASM  171 (382)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH
Confidence            8888888888889999999999999999999999998776544433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=99.20  E-value=2.9e-10  Score=98.05  Aligned_cols=126  Identities=15%  Similarity=-0.031  Sum_probs=86.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH-hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT-VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      +..++.+++|+++||+|||+.++.+..+..++..+... ..++.+.+ .+..++.|++...........+.+.+|++ ||
T Consensus       306 ~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~~~~~~~~~~~p~~~~g  384 (467)
T PRK09556        306 GALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVYQHATSEYMY-LASLFALGFLVFGPQLLIGVAAVGFVPKKAIG  384 (467)
T ss_pred             HHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHhcCcHHHH-HHHHHHHHHHHhhHHHHHHHHHHhhcchhhHH
Confidence            45789999999999999998776655444433322220 23444433 34466667543333333335566888885 99


Q ss_pred             HHHHHHHhhHHH-HHHHHHHHHHHHHh------------hhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          81 LATSLGACGTGI-GTFVYAPLTQYWIE------------EYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        81 ~~~~~~~~~~~~-g~~l~~~~~~~~~~------------~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ++.|+.+....+ |.+++|.+.+++.+            ..||+..|++..++.++..++.+
T Consensus       385 ~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~  446 (467)
T PRK09556        385 VANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA  446 (467)
T ss_pred             HHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence            999999888886 77999999999999            57899999887776666555544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=99.20  E-value=3.4e-10  Score=95.61  Aligned_cols=124  Identities=13%  Similarity=0.027  Sum_probs=94.6

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ..++.++.|+++||+|+|+.+..+.+...++.++.. ..++.+.+ ....++.|++.+...+....++.+.+|.+ |+++
T Consensus       268 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~g~~  345 (406)
T PRK11551        268 GALGSLLIGALMDRLRPRRVVLLIYAGILASLAALA-AAPSFAGM-LLAGFAAGLFVVGGQSVLYALAPLFYPTQVRGTG  345 (406)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-hcCcHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcchhhhhhh
Confidence            467889999999999999998887777777766666 66666645 34467778877777777888888888775 9999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHh
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~  129 (235)
                      .|+.+....+|..++|.+.+.+.++.+ |...++....+.+...++.+
T Consensus       346 ~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (406)
T PRK11551        346 VGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAAL  393 (406)
T ss_pred             hhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988754 55555555544444444443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.20  E-value=5e-10  Score=94.46  Aligned_cols=126  Identities=13%  Similarity=-0.019  Sum_probs=84.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--hhc----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--VAN----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      .+.+++++.|+++||+|||+.++.+.+...++......  ..+    +.....++.+++.|++.+...+....++.+.. 
T Consensus        50 ~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-  128 (396)
T TIGR00882        50 FSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVS-  128 (396)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhh-
Confidence            45788999999999999999998877665544432210  111    12222234467777777766666666655532 


Q ss_pred             cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          77 KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      ++++...+.......+|.+++|.+++.+.+ .+|+..|++.+++.++..++.+.
T Consensus       129 ~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  181 (396)
T TIGR00882       129 RNSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALILMLLLMF  181 (396)
T ss_pred             hhcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHHHHHHHH
Confidence            234556677777788999999999887765 59999998877766655544433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=99.19  E-value=1.3e-10  Score=99.93  Aligned_cols=120  Identities=8%  Similarity=0.084  Sum_probs=89.8

Q ss_pred             cchhhhhHHHhhh--hchhHHHHHH--HHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch
Q psy6058           5 LLLGPVASSFVDK--YGCRWMTILG--GIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR   79 (235)
Q Consensus         5 ~i~~~~~g~l~dr--~G~r~~~~~~--~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r   79 (235)
                      .++.++.|+++||  +++|+...++  .++.+++.++.. ..++++.+ ++.+++.|++.+...+....++.+.+|+ ++
T Consensus       290 ~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~~-~i~~~~~G~~~g~~~~~~~~~~~~~~~~~~~  367 (455)
T TIGR00892       290 IFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCA-LAGDYTGL-VIYCIFFGLSFGSVGALLFEVLMDLVGAQRF  367 (455)
T ss_pred             HHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHH-HhchHHHH-HHHHHHHHHHhchHHHHHHHHHHHHhhHHHH
Confidence            4567778999997  3444433333  333344445555 66777755 4558888999988888888888888766 49


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHH
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCI  126 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~  126 (235)
                      +++.+++++...+|..++|.+++.+.+.. +|+..|++.+++.++..+
T Consensus       368 g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       368 SSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            99999999999999999999999999887 599999887776554443

>PRK09952 shikimate transporter; Provisional

Probab=99.18  E-value=9.6e-10  Score=94.09  Aligned_cols=126  Identities=15%  Similarity=0.136  Sum_probs=89.0

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH-h-hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT-V-ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      +++.++.|+++||+|||++++.+.++..++.+.... . ..+...+++...++.+++.+...+....++.|.+|.+ |+.
T Consensus       300 ~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~e~~p~~~r~t  379 (438)
T PRK09952        300 CLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALEAQSIFWIVFFSIMLANIAHDMVVCVQQPMFTEMFGASYRYS  379 (438)
T ss_pred             HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCcchhHH
Confidence            456778999999999999988887766555433320 1 2222223233355667777777788888999999886 998


Q ss_pred             HHHH-HHhhHHHHHHHHHHHHHHHHhhh--CcHHHHHHHHHHHHHHHHHHhh
Q psy6058          82 ATSL-GACGTGIGTFVYAPLTQYWIEEY--GWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        82 ~~~~-~~~~~~~g~~l~~~~~~~~~~~~--gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      +.++ +..+..+|+.++|.+.+++.+..  +|...+.+.+++.++..+..+.
T Consensus       380 g~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~  431 (438)
T PRK09952        380 GAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALL  431 (438)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            9988 44555689999999999998754  4888777766666665555443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.18  E-value=3.1e-10  Score=95.35  Aligned_cols=115  Identities=10%  Similarity=-0.084  Sum_probs=83.6

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHH-HHHH-HHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGII-SGTG-FVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg   80 (235)
                      ...++++++|+++||+||+........+ ..+. ..... .+++++.+ ++.|++.|.+.+...+...++..+ .+++|+
T Consensus        51 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~l-~~~~~l~~~~~~~~~p~~~al~~~-~~~~~~  127 (382)
T TIGR00902        51 ARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA-GAHNAWLL-FIAIGLFALFFSAGMPIGDALANT-WQKQFG  127 (382)
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH-hhhhHHHH-HHHHHHHHHHHccchhHHHHHHHH-HHHHcC
Confidence            3457788999999999985433222211 1111 12333 56778766 445888888877777776666554 456789


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHH
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT  120 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~  120 (235)
                      ++.|.......+|.+++|.+++.+.+++|||..|++....
T Consensus       128 ~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~  167 (382)
T TIGR00902       128 LDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAG  167 (382)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence            9999999999999999999999999999999999876654

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00897 2A0118 polyol permease family

Probab=99.18  E-value=8.8e-10  Score=93.24  Aligned_cols=127  Identities=15%  Similarity=0.182  Sum_probs=91.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHH-HHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTI-LGGIISGTGFVLSATV----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      +..++.++.|+++||+|||+.+. .+.+...++.+.....    .++.+.+ +...++.|++.+...+ ....+.+..|+
T Consensus       269 ~~~ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~G~~~~~~~~-~~~~~~~~~~~  346 (402)
T TIGR00897       269 TNIVFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFGHSFAVA-LIIAIALGIFLAGYVP-LAAVFPTLAPK  346 (402)
T ss_pred             HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccCCcHHHH-HHHHHHHHHHHHHHHH-HHHHHHhhCcc
Confidence            35788899999999999888764 3333333333222201    2344433 4446777887766533 44556677787


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      +||++.|+.+....+|..++|.+.+.+.+..||...+++.+++.++..+...+.
T Consensus       347 ~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       347 HKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999998887776666655443

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=99.18  E-value=9.7e-10  Score=92.35  Aligned_cols=120  Identities=9%  Similarity=0.099  Sum_probs=100.7

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~   82 (235)
                      ..++.++.+++.||+|+|+.+.++.+...+..++.+ +.++.+.+ +...++.|++.+...+....++.+. |+ +|+++
T Consensus       253 ~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~q~l~g~~~~~~~~~~~~~i~~~-~~~~~~~~  329 (382)
T TIGR00902       253 EIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG-AIEAFPLI-FLLQILHCGTFAVCHLAAMRYIAAQ-PGSEIAKL  329 (382)
T ss_pred             HHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH-hHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhC-CHhhHHHH
Confidence            345678889999999999999999999999999998 88988866 4458999999999999999999987 55 59999


Q ss_pred             HHHHH-hhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          83 TSLGA-CGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        83 ~~~~~-~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +++++ ...++|..++|.+++++.+++|+ ..|++.+++.++.+++
T Consensus       330 q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       330 QALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            99976 57789999999999999999986 6666666666555444

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=99.14  E-value=1.7e-09  Score=87.72  Aligned_cols=124  Identities=21%  Similarity=0.261  Sum_probs=110.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      +..+.+++..++..|+|..+.+.++.++..++.++-. .. +.+.+ ...-++.|.|.+...+..+..+.+.||++-+..
T Consensus        59 ~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~-~~-~~~~L-~~gt~l~G~gIav~nVLLPslIK~~Fpk~~~~m  135 (395)
T COG2807          59 AFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRS-LG-GLPLL-FLGTLLAGAGIAVINVLLPSLIKRDFPKRVGLM  135 (395)
T ss_pred             HHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHh-cc-cHHHH-HHHHHHHHhhHHHHHHhhhHHHHhhcccchhhH
Confidence            4567889999999999999999999999999999988 66 44435 555788899999999999999999999999999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHHHHh
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +|+|.+...+|.++++.+...+.++. |||....+.+...++.++.++
T Consensus       136 tglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         136 TGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             HhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998887 799999999998887777755

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.12  E-value=8.2e-10  Score=95.29  Aligned_cols=125  Identities=12%  Similarity=0.079  Sum_probs=87.6

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--ch-HHHHHHHHHHHHHhhhhhhh-HhHHHHHHhhcccc-
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--NS-IEAQYITFGCIAGCGLSLAY-VTAVVSIAYWFDKK-   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~-~~~l~i~~~~l~G~~~g~~~-~~~~~~~~~~~~~~-   78 (235)
                      ..++.+++++++||+|||+.++.+.++.+++.++.. ..  .+ .+...+...++.+.+.+..+ +....++.|.+|++ 
T Consensus       319 ~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~  397 (479)
T PRK10077        319 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG-TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI  397 (479)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHH-HHHhcCcccHHHHHHHHHHHHHHhccccchhHHHhHhhCChhH
Confidence            357789999999999999999999998888877765 33  11 11121222334444444333 45567888998875 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHH------HhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYW------IEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~------~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      |+++.|+......+|.++++.+.+.+      .+.++|++.|++.+++.++..++.+
T Consensus       398 r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (479)
T PRK10077        398 RGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  454 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHH
Confidence            99999999998888888886665543      3578888888887766555555443

>PRK09528 lacY galactoside permease; Reviewed

Probab=99.12  E-value=1.4e-09  Score=92.49  Aligned_cols=126  Identities=15%  Similarity=0.010  Sum_probs=76.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--hhc----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--VAN----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~~~----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      .+.++++++|+++||+|||++++++..+..++......  ...    +.....+..+++.|.+.....+....+. +..+
T Consensus        58 ~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  136 (420)
T PRK09528         58 FALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYI-ERVS  136 (420)
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHH-HHHH
Confidence            45788999999999999999988876655544332210  111    1110111112223332222222222222 2223


Q ss_pred             cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          77 KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      ++++...+.......+|..++|.+++.+.+ .+|++.|++.++..++..++.++
T Consensus       137 ~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~~~~~~~~~~~  189 (420)
T PRK09528        137 RRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGSALILLVLLFF  189 (420)
T ss_pred             hhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHhc
Confidence            457778888888889999999999998876 48999998877666555555443

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=99.12  E-value=5.3e-10  Score=95.68  Aligned_cols=126  Identities=15%  Similarity=0.168  Sum_probs=90.8

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----ch-----HHHHHHHHHHHHHhhhhhhh-HhHHHHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-----NS-----IEAQYITFGCIAGCGLSLAY-VTAVVSI   71 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~l~i~~~~l~G~~~g~~~-~~~~~~~   71 (235)
                      +..++.++.|+++||+|||+.+.++.++..++.++.. +.     ++     .+..+.. ..+.+.+.+... +....++
T Consensus       331 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  408 (481)
T TIGR00879       331 VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLG-ILGASFVTGSSKSSGNVAIVF-ILLFIAFFAMGWGPVPWVIV  408 (481)
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHhhcccCCcccchhHHHHHH-HHHHHHHHHccccCeehhhh
Confidence            3467889999999999999999988877777766554 21     11     1212122 223333333322 4445566


Q ss_pred             Hhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          72 AYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        72 ~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      .+.+|++ |+++.++......+|.+++|.+.+.+.++.+|++.|++.++++++..++.++
T Consensus       409 ~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~  468 (481)
T TIGR00879       409 SEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYF  468 (481)
T ss_pred             hccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHhe
Confidence            8888875 9999999999999999999999999999999999998888776666665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK03633 putative MFS family transporter protein; Provisional

Probab=99.11  E-value=2.6e-09  Score=89.70  Aligned_cols=120  Identities=10%  Similarity=0.030  Sum_probs=91.5

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~   82 (235)
                      ..+++++.|++.||+|+|+++..+..+..++.+...   .... . +...++.|++.+...+.....+.+..|+ +++..
T Consensus       248 ~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~---~~~~-~-~~~~~l~g~~~~~~~p~~~~~~~~~~~~~~~~~~  322 (381)
T PRK03633        248 GILGQWPIGRLADRFGRLLVLRVQVFVVILGSIAML---SQAA-M-APALFILGAAGFTLYPVAMAWACEKVEHHELVAM  322 (381)
T ss_pred             HHHHHhhhHHHHHHcCcHHHHHHHHHHHHHHHHHHh---hhHH-H-HHHHHHHHHHHHhHHHHHHHHHHccCCHHHHHHH
Confidence            456888899999999999998888877777655432   2222 2 2235666777667778888888887766 47777


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      .+.+...+.+|.+++|.+++.+.+++||++.|.+.+.+.++..+..
T Consensus       323 ~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  368 (381)
T PRK03633        323 NQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLML  368 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHH
Confidence            8888888999999999999999999999999998777666554443

>TIGR00898 2A0119 cation transport protein

Probab=99.09  E-value=1.8e-09  Score=93.86  Aligned_cols=123  Identities=15%  Similarity=0.165  Sum_probs=92.6

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchH-HHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSI-EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      .++.++.+++.||+|||+.+.++.++.++++++.. +.++. ..+.+...++.+++.+..++....+..|.+|.+ |+++
T Consensus       369 i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~  447 (505)
T TIGR00898       369 LPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL-FVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLG  447 (505)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhh
Confidence            45778899999999999999999998888887777 55433 122233345556677777788888899999886 9999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      .|+.+....+|++++|.+.+ + ...++...+++.+++.++..++.++
T Consensus       448 ~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~  493 (505)
T TIGR00898       448 VGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILTLF  493 (505)
T ss_pred             HhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999988 3 4456666777766655555444443

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=99.09  E-value=3.8e-10  Score=95.07  Aligned_cols=125  Identities=21%  Similarity=0.244  Sum_probs=104.7

Q ss_pred             cchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-c--
Q psy6058           5 LLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-K--   78 (235)
Q Consensus         5 ~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~--   78 (235)
                      .+.+.++||++|| .|+|+.++.|.++..++.++.+ .+.  +...+++. .++.++|.|..-+...+.+++.+|+ +  
T Consensus        75 Y~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~-~~~~~~~~gl~i~-L~~I~iG~Gl~K~NiS~llg~ly~~~Dpr  152 (498)
T COG3104          75 YLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLA-ISSVSGPGGLYIG-LALIIVGTGLFKPNISSLLGELYPKDDPR  152 (498)
T ss_pred             HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHh-ccccccccHHHHH-HHHHHhccccccccHHHHHHHhcCCCCcc
Confidence            4567899999999 5999999999999999999998 663  55556555 6666799999999999999998765 3  


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      |-.+.++++++.++|+.++|.+.+++.+++||...|...++-....++..++.
T Consensus       153 rD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~~  205 (498)
T COG3104         153 RDGGFTLFYMGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLLG  205 (498)
T ss_pred             cCCCccEEEEEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHc
Confidence            66778889999999999999999999999999999998887666665555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.08  E-value=2.3e-09  Score=93.22  Aligned_cols=123  Identities=20%  Similarity=0.207  Sum_probs=99.8

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      .++.++++|.++||+.||++++.+-++..+..+...++.    .+.+.+ ++..++.|++.+...+...+++.+..|++ 
T Consensus        58 ~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~L-l~~~fl~g~~~a~~~PA~~A~ip~lV~~~~  136 (524)
T PF05977_consen   58 ILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLL-LILTFLLGIGSAFFNPAWQAIIPELVPKED  136 (524)
T ss_pred             HHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence            357889999999999999999999887766554443111    355655 45578889999999999999999998885 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      ...++++..+..++...+||.+++.+....|-.+.|.+.++..++...+
T Consensus       137 L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~  185 (524)
T PF05977_consen  137 LPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILA  185 (524)
T ss_pred             HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999888998877655544433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.07  E-value=2e-09  Score=93.67  Aligned_cols=122  Identities=13%  Similarity=0.006  Sum_probs=81.9

Q ss_pred             chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch---HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS---IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~---~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ++.+++++++||+|||+.++++.++.++++++.. ...+   .....+...+...++.....+....+.+|.+|.+ |++
T Consensus       350 ~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~  428 (502)
T TIGR00887       350 PGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLG-FAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRST  428 (502)
T ss_pred             HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHH-HHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHH
Confidence            4667789999999999999888888777766555 3321   1111111111111111122344556778999987 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhh----------hCcHHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEE----------YGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~----------~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +.++.+....+|++++|.+.+++.+.          .++...|++.+++.++..+..
T Consensus       429 ~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       429 AHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             HHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998874          345566776666555544443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=99.06  E-value=7.8e-10  Score=95.65  Aligned_cols=130  Identities=17%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             ccchhhhhHHHhhhhchh-------HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           4 PLLLGPVASSFVDKYGCR-------WMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      ..++.+++|+++||++||       ..+.+..++..++.++.. ..++.+.. +...++.+++.+...+....++.+..|
T Consensus       301 ~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~  378 (476)
T PLN00028        301 NLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLG-RANSLGAA-IVVMILFSIFVQAACGATFGIVPFVSR  378 (476)
T ss_pred             HHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhc-ccchHHHH-HHHHHHHHHHHHHhhhhhcccCcccCh
Confidence            467889999999999875       222233333333334444 44554433 333455566555555555555666677


Q ss_pred             cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhccCCch
Q psy6058          77 KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALMKDPEW  136 (235)
Q Consensus        77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (235)
                      +++|.+.|+...+..+|+.++|.+.+ ..+..+|+..|++.+++.++..++.++.+.+.+
T Consensus       379 ~~~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~~~~~~~  437 (476)
T PLN00028        379 RSLGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAFIHFPQW  437 (476)
T ss_pred             hhchhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHheeccch
Confidence            78999999988877777777776643 222346999999888777777666666554443

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=99.06  E-value=4e-09  Score=86.75  Aligned_cols=128  Identities=18%  Similarity=0.165  Sum_probs=103.8

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      .+|.++++..|++.+|+|+|+.++.|..++++++.++. -+   .++. ++++..++.|.|.+...+..+.+++...++ 
T Consensus        59 ~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~-pAa~~~~y~-~FL~~lFila~Gi~~LetaaNp~v~~lg~~~  136 (422)
T COG0738          59 GGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW-PAASSKSYG-FFLVALFILASGIGLLETAANPYVTLLGKPE  136 (422)
T ss_pred             HHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh-hhhhhhhHH-HHHHHHHHHHhhhHHHHhccchHHHHhCCch
Confidence            46788999999999999999999999999999999885 33   4444 446667888999999999999999998766 


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhh-------------------hCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEE-------------------YGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-------------------~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      +-...+.+.+.++.+|..++|.+++.+..+                   -.|++.|...+...++..+.....
T Consensus       137 ~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~  209 (422)
T COG0738         137 SAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLS  209 (422)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc
Confidence            477889999999999999999999988762                   137777777776655555554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=99.05  E-value=7.8e-09  Score=88.14  Aligned_cols=106  Identities=16%  Similarity=0.166  Sum_probs=84.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-----
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD-----   76 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~-----   76 (235)
                      ...++.+++++++||+|+|+.+.++.++.+++.++.. +. ++.+.+ +...++.|++.+...+...+++++..+     
T Consensus       269 ~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  346 (437)
T TIGR00792       269 AGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFF-FAGSNLPLI-LVLIILAGFGQNFVTGLVWALVADTVDYGEWK  346 (437)
T ss_pred             HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            3467888999999999999999999888888877776 54 344433 444677788888888888888777543     


Q ss_pred             --cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          77 --KK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        77 --~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                        ++ +|...|+.+.+..+|..+++.+.+.+.+..||
T Consensus       347 ~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~  383 (437)
T TIGR00792       347 TGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY  383 (437)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence              33 79999999999999999999999999887666

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK12307 putative sialic acid transporter; Provisional

Probab=99.05  E-value=5.3e-09  Score=88.95  Aligned_cols=112  Identities=13%  Similarity=-0.022  Sum_probs=78.2

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhh--hhhhhHhHHHHHHhhcccc-h
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCG--LSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~--~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      ..++.+++|++.||+|||+.+..+.++..+..+... ..+ +...+ +. .++.|++  .....+..+.++.+.+|++ |
T Consensus       279 ~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  355 (426)
T PRK12307        279 TVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLF-RIPQDNYLL-LG-ACLFGLMATNVGVGGLVPKFLYDYFPLEVR  355 (426)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HHccccHHH-HH-HHHHHHHHhcccHhHHHHHHHHHhCcHHHH
Confidence            467788999999999999998888877666655443 322 22212 22 2233332  2223344556778888876 9


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHH
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLA  118 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~  118 (235)
                      |++.|+......+|+.++|.+.+++.+.+|+....++..
T Consensus       356 g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~  394 (426)
T PRK12307        356 GLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIV  394 (426)
T ss_pred             hhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            999999999999999999999999999988765444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=99.05  E-value=3.4e-09  Score=89.41  Aligned_cols=122  Identities=14%  Similarity=0.210  Sum_probs=96.0

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLAT   83 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~   83 (235)
                      .++.+..|++.||+|+|+.+.++.++.+++..+.. ..++.+.+ +...++.|++..........+..+.++++ +++..
T Consensus       268 ~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~at~~  345 (396)
T TIGR00882       268 ALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSS-FATTALEV-VILKMLHAFEVPFLLVGCFKYITSQFDVRLSATIY  345 (396)
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-hcCChHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCcceEEEee
Confidence            45678889999999999999999988888888777 77777755 44478888877665555555666666665 77766


Q ss_pred             HH-HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          84 SL-GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        84 ~~-~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +. ++....+|+.+++.+++++.+..||+.+|++.+++.++..+..
T Consensus       346 ~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       346 LIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             hHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence            65 6788899999999999999999999999999888766555543

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=99.05  E-value=6.3e-09  Score=87.78  Aligned_cols=126  Identities=10%  Similarity=-0.064  Sum_probs=91.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-cc-chh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DK-KRT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~-~rg   80 (235)
                      ...++.++.|++.||+|||+.+.++..+..++.++......+...+ .  .++.|++.+...+.......+.. |+ +++
T Consensus       252 ~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~--~~l~g~g~g~~~~~~~~~~~~~~~~~~~~g  328 (393)
T PRK09705        252 GQAAGALLMPAMARHQDRRKLLMLALVLQLVGFCGFIWLPLQLPVL-W--AMVCGLGLGGAFPLCLLLALDHSVQPAIAG  328 (393)
T ss_pred             HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHccchHHHH-H--HHHHHHhccchHHHHHHHHHhhcCCHHHHH
Confidence            3568899999999999999998888877777766554123332212 1  24557777777777666666655 44 499


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhhc
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      +..++.+....++..++|.+.+++.+..| |...|++.+++.+...++.+.+
T Consensus       329 ~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~  380 (393)
T PRK09705        329 KLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRF  380 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999986 7777777666555555554443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=99.04  E-value=1.4e-08  Score=88.38  Aligned_cols=124  Identities=14%  Similarity=0.123  Sum_probs=101.0

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ..+|+++.+++.+|+++++.+..+.++.+++.+.++ +.++.+.. +...++.|++.....+...+.+-+..|++ ||++
T Consensus       267 ai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~la-l~~~~~~~-~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv  344 (524)
T PF05977_consen  267 AILGALLLPRLRRRLSSRRLVLLASLLFALALLLLA-LSPSFWLA-LIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRV  344 (524)
T ss_pred             HHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHh-cchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHH
Confidence            456666777777888888888899999999999999 88888855 44477889888888777777777788886 9999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ++++.+....+..+|..+.|.+.+.+|.+.++.+.++..++..++.+
T Consensus       345 ~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~  391 (524)
T PF05977_consen  345 FSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIAL  391 (524)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998876665544444433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=99.04  E-value=1.9e-09  Score=90.01  Aligned_cols=116  Identities=15%  Similarity=0.031  Sum_probs=85.5

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHH--HHHHHhh--chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGF--VLSATVA--NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~--~~~~~~~--~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      ..++.++.|+++||+|||+.+..+..+..+..  +... ..  ++.+.+ +...++.|++.+...+....++.+.+|++ 
T Consensus       268 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  345 (394)
T TIGR00883       268 FFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMA-LLDSGSFTLF-FFLVLGLALIGGMYTGPMGSFLPELFPTEV  345 (394)
T ss_pred             HHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH-HhcCCchHHH-HHHHHHHHHHHHHHhhhHHHHHHHhCCccc
Confidence            45778899999999999998775554443332  2222 22  344433 44467778888888888889999998875 


Q ss_pred             hhHHHHH-HHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHH
Q psy6058          79 RTLATSL-GACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTF  121 (235)
Q Consensus        79 rg~~~~~-~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~  121 (235)
                      |+++.++ ++.+..+|..++|.+.+.+.++.| |+..++...++.
T Consensus       346 ~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~  390 (394)
T TIGR00883       346 RYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALA  390 (394)
T ss_pred             eeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHH
Confidence            9999987 566677888999999999999988 887776655543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR01272 gluP glucose/galactose transporter

Probab=99.02  E-value=6.1e-09  Score=85.14  Aligned_cols=114  Identities=11%  Similarity=0.013  Sum_probs=90.1

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      ++.++.++.+++.||+|+|+.+.++.++..++.++.. ..++...+ . .-++.|++.+..+|...+...+.+|++.+.+
T Consensus       190 ~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~-~~~~~~~~-~-~~~l~g~~~s~i~P~~~s~a~~~~~~~~~~a  266 (310)
T TIGR01272       190 GAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAA-LTHGYVAM-W-FVLALGLFNSIMFPTIFSLALNALGRHTSQG  266 (310)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-HcCCHHHH-H-HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            4578999999999999999998888888777776665 54544323 2 2456799999999999998888888876777


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGT  120 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~  120 (235)
                      .++. .+..+|++++|.+.+.+.|..|.+..|++..++
T Consensus       267 sai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v~~~~  303 (310)
T TIGR01272       267 SGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFALPVPC  303 (310)
T ss_pred             HHHH-HHHHhcchHHHHHHHHHHHhccchHHHHHHHHH
Confidence            7775 556789999999999999999998888754443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=99.02  E-value=8.7e-09  Score=88.55  Aligned_cols=124  Identities=15%  Similarity=0.112  Sum_probs=77.7

Q ss_pred             ccchhhhhHHHhhhh--chhHHH-HHHHHHHHHHHHHHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           4 PLLLGPVASSFVDKY--GCRWMT-ILGGIISGTGFVLSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~--G~r~~~-~~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      ..++.+++|+++||+  +||... .....+..++.++.. .  ..+.+.. +...++.|.+..........++.+.+|++
T Consensus       302 ~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~  379 (452)
T PRK11273        302 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-LNPAGNPTVD-MACMIVIGFLIYGPVMLIGLHALELAPKK  379 (452)
T ss_pred             HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHH-HhcccChHHH-HHHHHHHHHHHHhHHHHHHHHHHHHcChh
Confidence            356788999999999  555432 222233333333332 2  2233322 22234444433222223334566788775


Q ss_pred             -hhHHHHHHHhhHHHHHHH-HHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          79 -RTLATSLGACGTGIGTFV-YAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        79 -rg~~~~~~~~~~~~g~~l-~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                       ||++.|+.+....+|+.+ +|.+.+.+.++.||+..|++.++++++..++..
T Consensus       380 ~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        380 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence             999999998888887655 799999999999999999887776655555544

>TIGR00893 2A0114 d-galactonate transporter

Probab=99.01  E-value=4.9e-09  Score=87.35  Aligned_cols=123  Identities=14%  Similarity=0.037  Sum_probs=81.3

Q ss_pred             ccchhhhhHHHhhhhchhHHH-HHHHHHHHH-----HHHHHHH-hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMT-ILGGIISGT-----GFVLSAT-VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~-~~~~~~~~~-----~~~~~~~-~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      ..++.++.|+++||+|||+.. ........+     +...... ..++.+ ..+...++.+.+.+ ..+....++.+.+|
T Consensus       264 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  341 (399)
T TIGR00893       264 GFIGMILGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNYVNIPY-AALALVALGFFGLG-AGAIGWALISDNAP  341 (399)
T ss_pred             HHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhccchhHH-HHHHHHHHHHhchh-hhhHHHHHHHhhcC
Confidence            457889999999999999511 111111111     1111110 112333 22332333333333 67778888999887


Q ss_pred             cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHH
Q psy6058          77 KK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~  128 (235)
                      ++ |+++.++.+....+|..++|.+.+.+.+..| |++.+++.+++.++..+..
T Consensus       342 ~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       342 GNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            75 9999999999999999999999999999988 9999988777665554443

>PRK11010 ampG muropeptide transporter; Validated

Probab=99.01  E-value=1.4e-08  Score=88.18  Aligned_cols=127  Identities=9%  Similarity=0.109  Sum_probs=91.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhh-chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVA-NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~-~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      +..++.+++|+++||+|+|+.+.++.++..++.++.   . .. ++.+.+ ....++..++.|...+....+..+..+++
T Consensus       271 ~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~-~~~~~~~~l-~~~~~l~~~~~g~~~~~~~a~~~~l~~~~  348 (491)
T PRK11010        271 ATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLS-ITDKNLYSM-GAAVFFENLCGGMGTAAFVALLMTLCNKS  348 (491)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence            346889999999999999888776666555544332   2 22 344333 22244444445555566667777877775


Q ss_pred             -hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          79 -RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        79 -rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                       +++..++.+....+|..+++.+++.+.+.+||+..|.+.+++.+..++..+..
T Consensus       349 ~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~  402 (491)
T PRK11010        349 FSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC  402 (491)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence             89999999999999999999999999999999999988887777666665443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=99.01  E-value=3.1e-09  Score=89.33  Aligned_cols=112  Identities=8%  Similarity=-0.023  Sum_probs=85.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHH-HHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFV-LSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      +..++.++.|++.||+|||+.+.++.++..+..+ +.. ..++.+.+ ....++.|+..+...+....++.+.+|++ |+
T Consensus       286 ~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  363 (405)
T TIGR00891       286 GAIVGGCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA-IGANVAVL-GLGLFFQQMLVQGIWGILPKHLGEYFPTDQRA  363 (405)
T ss_pred             HHHHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH-hCCchHHH-HHHHHHHHHHHccchhhHHHHHhhhCCcchhH
Confidence            3467889999999999999998888776533333 333 34454433 33345666666666677778888988775 99


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHH
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILL  116 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~  116 (235)
                      ++.|+.+....+|..++|.+.+.+.++.| |+..+..
T Consensus       364 ~~~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~~  400 (405)
T TIGR00891       364 AGLGFTYQLGNLGGALAPIIGALLAQRLDEYGTALAS  400 (405)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHh
Confidence            99999999999999999999999999988 7766554

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=99.00  E-value=1.4e-08  Score=85.30  Aligned_cols=116  Identities=14%  Similarity=0.148  Sum_probs=92.8

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATS   84 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~   84 (235)
                      .+..++.|++.||+|+|+++.++.+...++.++.. ..++.+.+ ++..++.|++.+...+....++.+..+.++++..+
T Consensus       254 ~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  331 (382)
T PRK11128        254 VLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLMG-STTALPWL-IVIQILHCGTFTVCHLAAMRYIAARPGSEVIRLQA  331 (382)
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHH-hhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHCCHhhhHHHHH
Confidence            45667889999999999999999998888888777 78887755 55588889999888888888888776666888888


Q ss_pred             HHH-hhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHH
Q psy6058          85 LGA-CGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQ  123 (235)
Q Consensus        85 ~~~-~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~  123 (235)
                      ++. ....+|..++|.+++.+.+.+|+ ..++..+++.+.
T Consensus       332 ~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~~  370 (382)
T PRK11128        332 LYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVALP  370 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHH
Confidence            875 55678889999999999999987 455555554443

>PRK10504 putative transporter; Provisional

Probab=98.99  E-value=1.6e-08  Score=87.18  Aligned_cols=103  Identities=9%  Similarity=-0.007  Sum_probs=80.5

Q ss_pred             chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ++.++.|++.||+|+|+++.++.++..++.++.. +.   .+.+.+ ....++.|++.+..++.....+.+..|++ ++.
T Consensus       312 ~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  389 (471)
T PRK10504        312 GMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFM-LVALLGWYYLL-PFVLFLQGMVNSTRFSSMNTLTLKDLPDNLASS  389 (471)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH-hccccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHhccc
Confidence            4457899999999999999988887777766665 43   222222 33356668888888888888888877765 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                      +.++.+....+|..+++.+.+.+.+..|+
T Consensus       390 ~~~~~~~~~~~g~~ig~~i~g~ll~~~g~  418 (471)
T PRK10504        390 GNSLLSMIMQLSMSIGVTIAGLLLGLFGQ  418 (471)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999998877655

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.99  E-value=8.3e-09  Score=88.20  Aligned_cols=126  Identities=13%  Similarity=-0.091  Sum_probs=77.8

Q ss_pred             cccchhhhhHHHhhhh--ch-hHHHHHHHHHHHHHHHHH-HHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           3 VPLLLGPVASSFVDKY--GC-RWMTILGGIISGTGFVLS-ATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~--G~-r~~~~~~~~~~~~~~~~~-~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      +..++.++.|+++||+  ++ +.......+...++.... .....+...+ ....++.|++...........+.+.+|+ 
T Consensus       291 ~~~~g~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  369 (434)
T PRK11663        291 GGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLMPFASYVMQ-AACFFTIGFFVFGPQMLIGMAAAECSHKE  369 (434)
T ss_pred             HHHHHHHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHcccccHHHH-HHHHHHHHHHHhhHHHHHHHHHHhcccHh
Confidence            3567889999999998  33 332222211111111111 1012232222 2223333433222222333456787866 


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +|+++.|+.+....+|.+++|.+.+++.++.||+..|++.+++.++..+..+
T Consensus       370 ~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  421 (434)
T PRK11663        370 AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLL  421 (434)
T ss_pred             hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            5999999999999999999999999999999999999988877666555433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=98.97  E-value=2.4e-08  Score=86.07  Aligned_cols=127  Identities=13%  Similarity=0.020  Sum_probs=103.4

Q ss_pred             cccchhhhhHHHhhhhchh--HHHHHHHHHHHHHHHHHHHh--------hchHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058           3 VPLLLGPVASSFVDKYGCR--WMTILGGIISGTGFVLSATV--------ANSIEAQYITFGCIAGCGLSLAYVTAVVSIA   72 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~   72 (235)
                      ..++|++++|++.||+|.|  ++++++.+++.+..+... +        .++.+.+++. .++.|+..|..++..=++.+
T Consensus       329 ~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~-~G~~~~~~g~~~~~~f~~~-a~~~G~~~G~~qs~sRs~~~  406 (477)
T PF11700_consen  329 VAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGL-FGFWPSFFGLKSPWEFWVL-AVLIGLFMGGIQSASRSLFS  406 (477)
T ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHH-HHhhhcccCcccHHHHHHH-HHHHHHHhhhHHHHHHHHHH
Confidence            3568999999999999999  888888877755555444 4        4566656454 78899999999999999999


Q ss_pred             hhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhhc
Q psy6058          73 YWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        73 ~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      +..|+ +.+...|++.+..-..+.+||.+.+.+.+..| .|..+....++.++.+++.+..
T Consensus       407 ~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  407 RLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhc
Confidence            98877 58999999999999999999999999999887 7888887777766666665443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=98.94  E-value=3.7e-08  Score=82.62  Aligned_cols=123  Identities=20%  Similarity=0.291  Sum_probs=105.1

Q ss_pred             chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHH
Q psy6058           6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATS   84 (235)
Q Consensus         6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~   84 (235)
                      +...+..++.+|+|.|+.++++.+++++=.++++ ++++.+.+ +..+.+.|+..+.......-++++.+|++ .++...
T Consensus       274 ~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~-~~~~~~~i-~~~klLH~~e~~l~lva~fkYI~~~fd~rlsAt~y~  351 (412)
T PF01306_consen  274 LMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSG-FATNPWVI-SLIKLLHALEFPLLLVAAFKYITAHFDKRLSATLYL  351 (412)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH-T--SHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHS-GGGHHHHHH
T ss_pred             HHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHh-hhcchHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHhHHHHHHH
Confidence            4556788999999999999999999999999999 99999866 66699999999999999999999999988 678888


Q ss_pred             H-HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          85 L-GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        85 ~-~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      + .+.+.++|..+.+.++|.+.|+.|.+.+|++.+.+.++..++..+
T Consensus       352 v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f  398 (412)
T PF01306_consen  352 VGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAF  398 (412)
T ss_dssp             HHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHhee
Confidence            7 578889999999999999999999999999988877766666544

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>PRK10054 putative transporter; Provisional

Probab=98.93  E-value=3.4e-08  Score=83.47  Aligned_cols=120  Identities=11%  Similarity=-0.033  Sum_probs=92.5

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ....++.|++.||+++|+.+.++.++..++.+... +. ++.+.+ +...++.|+|.+...+.....+.+..|++ |++.
T Consensus       258 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~~~~~p~~~~~~~  335 (395)
T PRK10054        258 VSLQYSVGRRLNAANIRPLMTAGTLCFVIGLVGFI-FSGNSLLLW-GMSAAVFTVGEIIYAPGEYMLIDHIAPPGMKASY  335 (395)
T ss_pred             eeehhHHHHHHccCCchhHHHHHHHHHHHHHHHHH-HcchHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHhCCcccceeh
Confidence            34457889999999999999999888888877776 54 455534 44477888888877777777888877764 8888


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      .+..+ ...+|.++||.+++.+.+++|....|++.+.+.++..++
T Consensus       336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~  379 (395)
T PRK10054        336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLL  379 (395)
T ss_pred             HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHH
Confidence            88655 556899999999999999999988888766655444444

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=98.92  E-value=3.2e-08  Score=85.06  Aligned_cols=126  Identities=14%  Similarity=0.120  Sum_probs=87.9

Q ss_pred             cccchhhhhHHHhh----hhchhHHHHHH-HHHHHHHHHHHHHhhchHH----------------HHHHHHHHHHHhhhh
Q psy6058           3 VPLLLGPVASSFVD----KYGCRWMTILG-GIISGTGFVLSATVANSIE----------------AQYITFGCIAGCGLS   61 (235)
Q Consensus         3 ~~~i~~~~~g~l~d----r~G~r~~~~~~-~~~~~~~~~~~~~~~~~~~----------------~l~i~~~~l~G~~~g   61 (235)
                      ..++.+|+.|+++|    |+|||+.++++ .+...++.+++. ++++..                ..++....+..++.+
T Consensus        51 ~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~-~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n  129 (477)
T TIGR01301        51 SGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG-FAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANN  129 (477)
T ss_pred             HHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH-hCchhhhhccccccccchhHHHHHHHHHHHHHHHHHH
Confidence            34688999999999    59999988774 566666666666 655432                122222334455777


Q ss_pred             hhhHhHHHHHHhhcccc-h--hHHHHHHHhhHHHHHHHHHHHHHHH--Hhhh-------------CcHHHHHHHHHHHHH
Q psy6058          62 LAYVTAVVSIAYWFDKK-R--TLATSLGACGTGIGTFVYAPLTQYW--IEEY-------------GWRGTILLLAGTFLQ  123 (235)
Q Consensus        62 ~~~~~~~~~~~~~~~~~-r--g~~~~~~~~~~~~g~~l~~~~~~~~--~~~~-------------gw~~~~~~~~~~~~~  123 (235)
                      ...++..++++|..|++ |  +.+.++.+.+.++|+.+++.++++.  ...+             +.+..|++.+++.++
T Consensus       130 ~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i  209 (477)
T TIGR01301       130 MLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAI  209 (477)
T ss_pred             HHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHH
Confidence            77888888999988764 4  5789999999999999999988764  2111             567888876665555


Q ss_pred             HHHHHh
Q psy6058         124 MCICGA  129 (235)
Q Consensus       124 ~~~~~~  129 (235)
                      ..+...
T Consensus       210 ~~l~t~  215 (477)
T TIGR01301       210 LTYIAL  215 (477)
T ss_pred             HHHHHe
Confidence            444433

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.91  E-value=5.8e-08  Score=81.73  Aligned_cols=121  Identities=15%  Similarity=0.154  Sum_probs=85.7

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh-----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-c-c
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV-----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-D-K   77 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~-~   77 (235)
                      .++.++.|++.||+|+|+.+..+.++..+..+.....     ..+...+ ....++.+++.+...+.....+.+.. + +
T Consensus       258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  336 (390)
T TIGR02718       258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWLAPGIAVA-WSCSAFGSLITGITSVAIYTAFMRFAGDGD  336 (390)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcccCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            4567889999999999999888776653332222201     1222222 22234445666777777777776665 4 3


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHH
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCI  126 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  126 (235)
                      ++++..++.+....+|..++|.+++.+.+..|++..|++.+++.++..+
T Consensus       337 ~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       337 QAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999887665555433

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=98.91  E-value=3.5e-08  Score=82.01  Aligned_cols=125  Identities=17%  Similarity=0.138  Sum_probs=99.4

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLAT   83 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~   83 (235)
                      ..+|..+.|++.|| +.|+.+.....+..+..+.+....++.+ +.++.-++.|++.+.........+++..|+.+..+.
T Consensus       260 ~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~~~~~~-~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~  337 (394)
T COG2814         260 GFIGNLLGGRLADR-GPRRALIAALLLLALALLALTFTGASPA-LALALLFLWGFAFSPALQGLQTRLARLAPDAADLAG  337 (394)
T ss_pred             HHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHH
Confidence            46899999999999 9999998888888888777772344444 334445566777666656556666666678899999


Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          84 SLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        84 ~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      +++...+++|..+|..+++.+.+++|+....++.+++.++.+++.++
T Consensus       338 sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~  384 (394)
T COG2814         338 SLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL  384 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988877777666554

>TIGR00788 fbt folate/biopterin transporter

Probab=98.91  E-value=1.7e-08  Score=87.18  Aligned_cols=124  Identities=18%  Similarity=0.142  Sum_probs=88.6

Q ss_pred             hhhhhHHHhhhhc-----hhHHHHHHHHHHH-HHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchh
Q psy6058           7 LGPVASSFVDKYG-----CRWMTILGGIISG-TGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRT   80 (235)
Q Consensus         7 ~~~~~g~l~dr~G-----~r~~~~~~~~~~~-~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg   80 (235)
                      .-+++|.++||++     ||+.++++.++.. ++....+ ..++.....+...++.+++.+...+..-.+..|..+++++
T Consensus        76 ~K~l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~~~~~  154 (468)
T TIGR00788        76 LKPFAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLP-GKVSSAKVAAAFIFLAALAKALYDVLVDSLYSERIRESPS  154 (468)
T ss_pred             HHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhcCCC
Confidence            3567999999997     7787888877763 4433344 3345444444457888999999999888999988764343


Q ss_pred             H---HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          81 L---ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        81 ~---~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      .   ..++......+|..+++.+++.+.+.++|+..|++.+++.++..+..+++
T Consensus       155 ~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~  208 (468)
T TIGR00788       155 AGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLS  208 (468)
T ss_pred             cCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhc
Confidence            3   33344444558999999999999999999999998887666554444443

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=98.91  E-value=1.9e-08  Score=83.13  Aligned_cols=104  Identities=8%  Similarity=-0.056  Sum_probs=87.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch-HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS-IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ..++.++.+++.||+|||+.+..+..+..++.++.. +.++ .+.+ ++..++.|++.+...+....++.+..|++ |++
T Consensus       260 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  337 (365)
T TIGR00900       260 ALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG-LTPPNFPLF-LVLWFAIGVGYGPINVPQGTLLQRRVPAELLGR  337 (365)
T ss_pred             HHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH-hhchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            457788999999999999999888877777777777 6653 5544 45578889999988888888999988765 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYG  109 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g  109 (235)
                      +.++.+....+|..++|.+.+.+.+++|
T Consensus       338 ~~~~~~~~~~~~~~~g~~~~g~l~~~~g  365 (365)
T TIGR00900       338 VFGAQFSLSHAAWPLGLILAGPLADHLG  365 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999988654

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=98.90  E-value=9.1e-09  Score=87.72  Aligned_cols=125  Identities=16%  Similarity=0.164  Sum_probs=88.0

Q ss_pred             cccchhhhhHHHhhh----hchh-HHHHHHHHHHHHHHHHHHHhhchH-----HHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058           3 VPLLLGPVASSFVDK----YGCR-WMTILGGIISGTGFVLSATVANSI-----EAQYITFGCIAGCGLSLAYVTAVVSIA   72 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~i~~~~l~G~~~g~~~~~~~~~~~   72 (235)
                      ..++..|+.|+++||    +||| +.++++.....++.+++. ..++.     ...+++.+++.+++.+...++..++..
T Consensus        47 ~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  125 (437)
T TIGR00792        47 LDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLF-TTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVP  125 (437)
T ss_pred             HHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHH-hCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCcc
Confidence            357889999999998    6774 467777777777777666 55432     112244467778888777777777777


Q ss_pred             hhc--ccchhHHHHHHHhhHHHHHHHHHHHHHHHHh-------hhCcHHHHHHHHHHHHHHHHHH
Q psy6058          73 YWF--DKKRTLATSLGACGTGIGTFVYAPLTQYWIE-------EYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        73 ~~~--~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      +..  +++|++..++...+..+|..+++.+.+.+..       ..+|++.+.+.+++.++..+..
T Consensus       126 ~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~  190 (437)
T TIGR00792       126 AITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIIC  190 (437)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHH
Confidence            764  3469999999888888888777666555542       4589999888777665554443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=98.90  E-value=3.5e-08  Score=83.47  Aligned_cols=119  Identities=13%  Similarity=-0.073  Sum_probs=87.8

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      ..++.++.|+++||+|+|+.+.++.++..++.++.. ..     .+.+.+ +...++.|++.+...+..........+++
T Consensus       264 ~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~-~~~~~~~g~g~~~~~~~~~~~~~~~~~~~  341 (406)
T PRK15402        264 LIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAA-LATVISSHAYLWL-TAGLSLYAFGIGLANAGLYRLTLFSSDVS  341 (406)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHcccccHHHH-HHHHHHHHHHHHHHhhhHHHHHhhhcccc
Confidence            456788999999999999999988888777776665 33     233333 44467778888877666655544445667


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM  124 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~  124 (235)
                      ||+..++++....+|..+|+.+.+.+.+..++....+...+..++.
T Consensus       342 ~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~  387 (406)
T PRK15402        342 KGTVSAAMGMLSMLIFTVGIELSKHAYLGGGNGLFNLFNLANGLLW  387 (406)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcccCCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988878765554444333333

>PRK15075 citrate-proton symporter; Provisional

Probab=98.90  E-value=4.2e-08  Score=83.86  Aligned_cols=107  Identities=16%  Similarity=0.084  Sum_probs=71.5

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHH-HHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFV-LSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~-~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      ..++.+++|+++||+|||++++.+.++..+... .....  .++...+ ....++.|++.+...+....++.|.+|++ |
T Consensus       287 ~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~e~~p~~~r  365 (434)
T PRK15075        287 NFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSWLVAAPSFARM-LAVELWLSFLYGSYNGAMVVALTEVMPAEVR  365 (434)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHcCCchHHH-HHHHHHHHHHHHHHHhhHHHHHHHHCCCCcc
Confidence            357788999999999999988776554433221 11101  2233222 23244456666666666667888988775 9


Q ss_pred             hHHHHHH-HhhHHHHHHHHHHHHHHHHhhhCcH
Q psy6058          80 TLATSLG-ACGTGIGTFVYAPLTQYWIEEYGWR  111 (235)
Q Consensus        80 g~~~~~~-~~~~~~g~~l~~~~~~~~~~~~gw~  111 (235)
                      +++.++. ..+..+++.++|.+.+.+.++.|++
T Consensus       366 g~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~  398 (434)
T PRK15075        366 TAGFSLAYSLATAIFGGFTPAISTWLIHVTGDK  398 (434)
T ss_pred             chheeHHHHHHHHHHhhhHHHHHHHHHHhcCCc
Confidence            9999985 4444556788999999999988864

>PRK10091 MFS transport protein AraJ; Provisional

Probab=98.89  E-value=4e-08  Score=82.58  Aligned_cols=122  Identities=11%  Similarity=0.014  Sum_probs=81.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHH-hhcccc-hh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIA-YWFDKK-RT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~-~~~~~~-rg   80 (235)
                      ...++.++.|++.||+|+|+.+..+..+..++.++.....++.+.. +...++.+++.....++...... +..+.+ ++
T Consensus       247 ~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  325 (382)
T PRK10091        247 GMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLMLFFFGGMKTAS-LIFAFICCAGLFALSAPLQILLLQNAKGGELLG  325 (382)
T ss_pred             HHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHH
Confidence            3467889999999999999999888888777765554134444433 33355556655544444443333 333333 44


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhh-hCcHHHHHHHHHHHHHHHHH
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEE-YGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~-~gw~~~~~~~~~~~~~~~~~  127 (235)
                      .+  ..+....+|..+||.+++.+.+. .+|++.+.+.+++.++...+
T Consensus       326 ~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~  371 (382)
T PRK10091        326 AA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSS  371 (382)
T ss_pred             HH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHH
Confidence            43  34667889999999999999985 68999998877655544444

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=98.89  E-value=4.2e-08  Score=77.12  Aligned_cols=122  Identities=14%  Similarity=0.184  Sum_probs=84.3

Q ss_pred             hhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchh
Q psy6058           8 GPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRT   80 (235)
Q Consensus         8 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg   80 (235)
                      .++.|.+.|++|++.++++|.+...++..+.. .+       .++|.+ ....++.|.+.+...........+.||++||
T Consensus        53 G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~-l~~~~~i~~~~~~~~-~~~~~l~~~s~~~~~ta~lvt~~~NFP~~RG  130 (250)
T PF06813_consen   53 GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLW-LAVSGRIPSLPVWLM-CLFLFLGGNSSCWFNTASLVTCVRNFPRSRG  130 (250)
T ss_pred             cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHhCccCccchHHH-HHHHHHHcccHHHhhhHHHHHHHHhCccccC
Confidence            58889999999999999999999999988776 43       234444 3334555555544445555555578899999


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH-HHHHHHHHHhhcc
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG-TFLQMCICGALMK  132 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~-~~~~~~~~~~~~~  132 (235)
                      ++.|+.-...++++++...+...+.+...- ..+.+.+. ..++.++..++.+
T Consensus       131 ~vvgilk~~~GLSaai~t~i~~~~f~~~~~-~fll~la~~~~~v~l~~~~~vr  182 (250)
T PF06813_consen  131 TVVGILKGFFGLSAAIFTQIYSAFFGDDPS-SFLLFLAVLPAVVCLVAMFFVR  182 (250)
T ss_pred             ceehhhhHHHHhHHHHHHHHHHHHcCCChH-HHHHHHHHHHHHHHHHHhhhee
Confidence            999999999999999988887776665323 33333343 3333344444444

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.89  E-value=7.6e-09  Score=85.61  Aligned_cols=124  Identities=19%  Similarity=0.087  Sum_probs=87.1

Q ss_pred             ccchhhhhHHHhhhh--chhHHHH-HHHHHHHHHHHHHHHhhchH--HHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           4 PLLLGPVASSFVDKY--GCRWMTI-LGGIISGTGFVLSATVANSI--EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~--G~r~~~~-~~~~~~~~~~~~~~~~~~~~--~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      ...|++++|+++||+  |||..+- +.++...++.+... .+++.  + +..++.+..|+..-+..-.......|..||+
T Consensus       301 gl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w-~~~~~~~~-l~~~~l~~iGf~IyGPqmLiGl~a~e~~pK~  378 (448)
T COG2271         301 GLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYW-LAPNGSYL-LDAILLFIIGFLIYGPQMLIGLAAAEFVPKK  378 (448)
T ss_pred             hhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH-cCCCccHH-HHHHHHHHHHHHHhhHHHHHHHHHhccccHh
Confidence            467899999999994  7776554 44445555555555 66544  4 3344455556554443333334555888998


Q ss_pred             -hhHHHHHHHhhHHH-HHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          79 -RTLATSLGACGTGI-GTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        79 -rg~~~~~~~~~~~~-g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                       -|++.|+...+..+ |..++....+++.|.+||.+.|++..+.+++..++..
T Consensus       379 AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~  431 (448)
T COG2271         379 AAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLL  431 (448)
T ss_pred             hccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHH
Confidence             99999999888888 8888888889998999999999987776655555433

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=98.85  E-value=9.2e-08  Score=80.91  Aligned_cols=120  Identities=16%  Similarity=0.160  Sum_probs=80.2

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhh-chHHHHHHHHH----HHHHhhhhhhhHhHHHHHHhhc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVA-NSIEAQYITFG----CIAGCGLSLAYVTAVVSIAYWF   75 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~-~~~~~l~i~~~----~l~G~~~g~~~~~~~~~~~~~~   75 (235)
                      ..++.+++|++.||+|+|+.+.++..+..++.+..   + .. ++.+.+ +...    +..|++.+...+....++.+.+
T Consensus       259 ~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~-~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  336 (402)
T PRK11902        259 TIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLA-VTPKHLWTM-ALAIGIENLCGGMGTAAFVALLMALCNRSF  336 (402)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-hcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45778899999999999998877776655554333   3 32 344433 2222    3345555555566666666666


Q ss_pred             ccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          76 DKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        76 ~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      |.   +..+++.....+|..+++.+++.+.+.+||+..|.+.+++.++..++.
T Consensus       337 ~~---~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        337 SA---TQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            54   334555556677887777889999999999999988777766655543

>PRK10133 L-fucose transporter; Provisional

Probab=98.85  E-value=5.3e-08  Score=83.42  Aligned_cols=121  Identities=14%  Similarity=0.075  Sum_probs=92.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      ++.++.++.|++.||+|+|+++..+.++..+++++.. +.++.+ . +...++.|++.+..+|...+...+.+|++.+.+
T Consensus       307 ~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~~-~-~~~~~l~glg~~~i~P~~~s~a~~~~~~~~~~a  383 (438)
T PRK10133        307 CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGGHV-G-LIALTLCSAFMSIQYPTIFSLGIKNLGQDTKYG  383 (438)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCChH-H-HHHHHHHHHHHHHHHHHHHHHHHcccchhhccc
Confidence            4578899999999999999999888877777766665 555533 2 233567899999999999999998888877777


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~  127 (235)
                      .++..+ ..+|+.++|.+.+.+.+..| .+..|++..++.+...+.
T Consensus       384 s~l~~~-~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~~~~~~~~  428 (438)
T PRK10133        384 SSFIVM-TIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_pred             hhHHhH-HhccchHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            777754 44688899999999999887 788887655554444433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=98.84  E-value=5e-08  Score=83.39  Aligned_cols=125  Identities=14%  Similarity=0.033  Sum_probs=84.7

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      ..++.|++|+++||+|+++++.++.+...++........+     +.+.. ....+...++.|......+.++.+.||+ 
T Consensus       299 ~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~lp~~~~~~~~~~-~~~~~~l~~~~G~gngsvfk~ip~~f~~~  377 (462)
T PRK15034        299 GAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTLPGTGSGNFIAF-YAVFMGLFLTAGLGSGSTFQMIAVIFRQI  377 (462)
T ss_pred             HHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhcccchHHHHhhHHHHhhh
Confidence            4577899999999999999999998877776643221222     33322 3323333344444445555566665553 


Q ss_pred             ---------------------chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHh
Q psy6058          78 ---------------------KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        78 ---------------------~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~  129 (235)
                                           +-|.+.|+......+|+++.|.+.+...+..| +...|+...+..+++.++.+
T Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w  451 (462)
T PRK15034        378 TIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTW  451 (462)
T ss_pred             hhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHH
Confidence                                 46788889999999999999988888877654 77788877776665555543

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.83  E-value=1.1e-07  Score=81.28  Aligned_cols=126  Identities=14%  Similarity=0.037  Sum_probs=71.8

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH-h--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT-V--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      ..++.++.|+++||+|||+.+.++.++..+....... .  ..+.... +....+.+++.+...+....++.|++|++ |
T Consensus       292 ~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r  370 (432)
T PRK10406        292 FMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAA-FGLVMCALLIVSFYTSISGILKAEMFPAQVR  370 (432)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCcc
Confidence            3567788999999999999887766554333322210 1  1222222 12112222333333445567788999886 9


Q ss_pred             hHHHHHHHhhHH-HHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhhc
Q psy6058          80 TLATSLGACGTG-IGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        80 g~~~~~~~~~~~-~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      +++.|+.+.... +++...|.+.+.+ +..| |...+++.++..++..+..+++
T Consensus       371 ~t~~g~~~~~g~~~~g~~~p~~~~~l-~~~g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        371 ALGVGLSYAVANALFGGSAEYVALSL-KSIGMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             chhhhHHHHHHHHHHHhHHHHHHHHH-HHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            999999765444 3344567776644 5555 5555555555555444444443

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=98.82  E-value=1.7e-07  Score=79.24  Aligned_cols=118  Identities=13%  Similarity=0.078  Sum_probs=85.7

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHH-HHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGII-SGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      ..++.++.+++.||.+++ .++.+..+ .....++.. ..++.+.+ ....++.|++.+...+....++.+..|++++++
T Consensus       265 ~iig~~~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~-~~~~~~~~-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~  341 (394)
T PRK10213        265 SFVGTSLSSFILKRSVKL-ALAGAPLVLAVSALVLTL-WGSDKIVA-TGVAIIWGLTFALVPVGWSTWITRSLADQAEKA  341 (394)
T ss_pred             HHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHHHHHhhhHHHHHHHHHHCcccHHHH
Confidence            456777888888886544 43444444 333344444 55566545 445778899998888888888888778777788


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM  124 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~  124 (235)
                      .++......+|..+|+.+++.+.+..|++..++..+++.++.
T Consensus       342 ~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~  383 (394)
T PRK10213        342 GSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLT  383 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHH
Confidence            888888889999999999999999999988888766544333

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=98.82  E-value=1.4e-07  Score=78.80  Aligned_cols=111  Identities=17%  Similarity=0.116  Sum_probs=77.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc----hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccch
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN----SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKR   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~r   79 (235)
                      ..++.++.|++.||+|+|+.+..+..+..++.+++. ...    +.+..++...++.|++.+...+.......+.+|+++
T Consensus       255 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  333 (385)
T TIGR00710       255 MIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE-ITAILGLGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFPHVA  333 (385)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence            467889999999999999998888877777766655 321    222233444567788888888888788888788889


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHH
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTIL  115 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~  115 (235)
                      +++.++.+.....++.+++.+.+.+.+..+|...+.
T Consensus       334 g~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~~~  369 (385)
T TIGR00710       334 GTASALFGTLRLVLGAIVGYLVSLIHGNTAWPMSLS  369 (385)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhccccChHHHHHH
Confidence            999999877766555555555555444444544443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=98.82  E-value=2.1e-07  Score=78.61  Aligned_cols=106  Identities=17%  Similarity=0.249  Sum_probs=86.5

Q ss_pred             hhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-chHHHHHHH---HHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           7 LGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-NSIEAQYIT---FGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         7 ~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~~~~~l~i~---~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      .-.+.+++..|+|.+++++++.+..++=..+.+ .. ++.+..++.   ..++.|+..+..+.....++.+..|++ |++
T Consensus       259 ~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a-~~~~~~~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at  337 (400)
T PF03825_consen  259 FFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYA-YFSDPWPFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRAT  337 (400)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHH
Confidence            345778999999999999999999999988888 65 454433222   134689999999999999999999887 999


Q ss_pred             HHHHHHh-hHHHHHHHHHHHHHHHHhhhCcHHH
Q psy6058          82 ATSLGAC-GTGIGTFVYAPLTQYWIEEYGWRGT  113 (235)
Q Consensus        82 ~~~~~~~-~~~~g~~l~~~~~~~~~~~~gw~~~  113 (235)
                      +++++.. ..++|..+|..++|++.+++|-+..
T Consensus       338 ~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~  370 (400)
T PF03825_consen  338 AQGLYSALSFGLGGAIGSLIGGWLYDAFGARGM  370 (400)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhh
Confidence            9999765 5689999999999999998875543

>KOG0253|consensus

Probab=98.77  E-value=1.5e-08  Score=82.60  Aligned_cols=117  Identities=15%  Similarity=0.104  Sum_probs=84.6

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--chHHH-HHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--NSIEA-QYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--~~~~~-l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      +-|.++.+++.||+|||+.+..+.++++++.++.. .+  +|... ++...|++    ..+.+...+.|.-|.+|.. |+
T Consensus       395 fPGlLIt~~iverlGRKkTMal~l~~f~iflfll~-~c~~rn~~tvllf~araf----isg~fqvaYvYtPEVyPTavRa  469 (528)
T KOG0253|consen  395 FPGLLITGVIVERLGRKKTMALSLILFGIFLFLLT-TCKTRNAYTVLLFTARAF----ISGAFQVAYVYTPEVYPTAVRA  469 (528)
T ss_pred             CCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHH-HhcCcchhHHHHHHHHHH----HhchheEEEEecCcccchhhhh
Confidence            45788999999999999999999999998887776 55  33322 22233544    3445566677888999997 99


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      ++.|....+..+|+++.|.++  +.....-..+..+.+.++++..++.
T Consensus       470 tgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIav  515 (528)
T KOG0253|consen  470 TGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAV  515 (528)
T ss_pred             cchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHh
Confidence            999999999999999999998  3333333344455555555555553

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.75  E-value=3.7e-08  Score=83.66  Aligned_cols=115  Identities=16%  Similarity=0.088  Sum_probs=73.2

Q ss_pred             ccchhhhhHHHhhhhchhHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           4 PLLLGPVASSFVDKYGCRWM-TILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      ..++.+++|+++||+++|+. +....++..++.++.. ...+.... +...++.+++.....+.......+.+|. +|++
T Consensus       292 ~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  369 (412)
T TIGR02332       292 TIFGMIWWSRHSDRLKERKHHTALPYLFAAAGWLLAS-ATDHNLIQ-LLGIIMASMGSFSAMAIFWTTPDQSISLQARAI  369 (412)
T ss_pred             HHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHH-hcCCHHHH-HHHHHHHHHHhhhhhhHHHhhcccccchHHHHH
Confidence            45678999999999997764 4444444444433332 22232211 2112222333322223333344556666 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGT  120 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~  120 (235)
                      +.|+.+....+|.+++|.+.+.+.+..| |++.+++.+++
T Consensus       370 a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~  409 (412)
T TIGR02332       370 AIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL  409 (412)
T ss_pred             HHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence            9999999999999999999999999875 99988876554

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=98.75  E-value=2.9e-08  Score=82.16  Aligned_cols=123  Identities=17%  Similarity=0.138  Sum_probs=94.4

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-------hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-------SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-------~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      .+.-+++|+++||+|.++++++....++++..+.. ...       +.. .++...+..++..|......+..+...||+
T Consensus       268 ~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~-~~~~~~~~~~~~~-~~~~~~l~l~~~~G~GnGsvfk~Ip~if~~  345 (417)
T COG2223         268 ALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLS-LFLTGFGHGGSFV-VFVAVFLALFVFAGLGNGSVFKMIPVIFPK  345 (417)
T ss_pred             HHHHhccchhhhhccchhHHHHHHHHHHHHHHHHH-ccccccccCcchH-HHHHHHHHHHHHhccCcchheeechHHHHh
Confidence            45678999999999999999999999988888777 442       222 222223333444444445566778888889


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHh
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~  129 (235)
                      +-|.+.|+.....++|++..|...+...+..| +...|++...+.+++++..+
T Consensus       346 ~~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~  398 (417)
T COG2223         346 ETGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTW  398 (417)
T ss_pred             hhhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999888 88888888877766666543

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=98.75  E-value=1.5e-07  Score=79.94  Aligned_cols=118  Identities=12%  Similarity=0.026  Sum_probs=89.8

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      +..++.++++++.||+++|+++.+..++..+++++.. ..++...+ .+ .++.|++.+..+|.......+..+++...+
T Consensus       281 ~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~-~~~~~~~~-~~-l~~~glf~s~~fp~i~sl~~~~~g~~~~~~  357 (410)
T TIGR00885       281 IFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI-FAGGHVGL-YC-LTLCSAFMSLMFPTIYGIALKGLGQDTKYG  357 (410)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-HcCChHHH-HH-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Confidence            3568899999999999999999898888888888887 66665433 33 566788899999999998888888775444


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhh------CcHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEY------GWRGTILLLAGTFLQM  124 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~------gw~~~~~~~~~~~~~~  124 (235)
                      .+...++ .+|++++|++.+.+.|..      +.+..|++...+.+..
T Consensus       358 s~~l~~~-~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~~~~~  404 (410)
T TIGR00885       358 AAGLVMA-IIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLCFAVI  404 (410)
T ss_pred             HHHHHHH-HhccchHHHHHHHHHHHhcccccCccchHHHHHHHHHHHH
Confidence            4444443 399999999999999964      4777887655544433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>KOG3762|consensus

Probab=98.74  E-value=6.7e-08  Score=82.22  Aligned_cols=124  Identities=15%  Similarity=0.098  Sum_probs=106.8

Q ss_pred             chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHH
Q psy6058           6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATS   84 (235)
Q Consensus         6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~   84 (235)
                      +.-++.+++..|+|+-+++..++....+=.+..+ ...|.|+. +-.-++.|+..+..|..+.+|++...|++ |.++.+
T Consensus       421 ~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S-~L~n~W~v-LPieilqgit~aliWaa~~sY~s~vaPp~l~at~Q~  498 (618)
T KOG3762|consen  421 LFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYS-YLQNPWMV-LPIEILQGITHALIWAAIISYASHVAPPGLRATAQG  498 (618)
T ss_pred             HHHHHHHHHHHHhcccceeeehhhHHHHHHHHHH-HhcCchhe-eeHHHHHHHHHHHHHHHHHHHHHhhCCCcchHHHHH
Confidence            4456788999999999999999999999999888 89999976 44489999999999999999999988776 999999


Q ss_pred             HH-HhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          85 LG-ACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        85 ~~-~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      +. ....++|-.+|.++++.+...+|-+..|.+.++.+++.+++...+
T Consensus       499 l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~i  546 (618)
T KOG3762|consen  499 LLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFISI  546 (618)
T ss_pred             HHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHHh
Confidence            85 455688999999999999999999999999888777766665543

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=98.74  E-value=1.1e-06  Score=71.84  Aligned_cols=121  Identities=12%  Similarity=0.145  Sum_probs=80.7

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHH-HHHhhc----ccc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVV-SIAYWF----DKK   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~-~~~~~~----~~~   78 (235)
                      .++..++.|.++||+|||+..+.-+++..+++++..  .++++.+ ++.|++.|++....+...-+ ++.|+-    |++
T Consensus        82 s~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~--~~~~~~L-~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~  158 (354)
T PF05631_consen   82 SAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKH--SSNYPVL-LLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQE  158 (354)
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHh--ccccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChH
Confidence            356788899999999999999999999999998665  6777756 66699999999999888877 445653    222


Q ss_pred             -hhHHHHHHH-hhHHHHHHHHHHHHHHHHhhhCc--HHHHHHHHHHHHHHHHH
Q psy6058          79 -RTLATSLGA-CGTGIGTFVYAPLTQYWIEEYGW--RGTILLLAGTFLQMCIC  127 (235)
Q Consensus        79 -rg~~~~~~~-~~~~~g~~l~~~~~~~~~~~~gw--~~~~~~~~~~~~~~~~~  127 (235)
                       .+...+... ...++-.++...++.++.+..+.  .++|.....+.++..++
T Consensus       159 ~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~  211 (354)
T PF05631_consen  159 WLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVL  211 (354)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence             222222222 22233334445556666666554  66776655554444443

>TIGR00895 2A0115 benzoate transport

Probab=98.73  E-value=1e-07  Score=79.76  Aligned_cols=100  Identities=15%  Similarity=0.117  Sum_probs=75.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      +..++.++.|+++||+|+|..+. +.++..+...+......+.+.+ +...++.|++.+...+....++.+.+|++ |++
T Consensus       297 ~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~  374 (398)
T TIGR00895       297 GGVIGSIIFGWLADRLGPRVTAL-LLLLGAVFAVLVGSTLFSPTLL-LLLGAIAGFFVNGGQSGLYALMALFYPTAIRAT  374 (398)
T ss_pred             HHHHHHHHHHHHHhhcchHHHHH-HHHHHHHHHHHHHHHhhCHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            34678899999999999995444 4444333333333024555544 44477889999888888889999988775 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYW  104 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~  104 (235)
                      +.|+......+|..++|.+.+++
T Consensus       375 ~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       375 GVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHhc
Confidence            99999999999999999998875

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=98.72  E-value=1.5e-07  Score=89.60  Aligned_cols=117  Identities=15%  Similarity=0.072  Sum_probs=89.8

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      +.+++++++|++.||+++++.+.++.++.+++.++.. +..+.+.+ ++..++.|++.+...+....++.+..|++ ||+
T Consensus       281 g~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~rg~  358 (1146)
T PRK08633        281 GIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP-TAPSLASV-LVLFFLFGFSAGLFIVPLNALIQFRAPEKELGK  358 (1146)
T ss_pred             HHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHHHHHHhhHHHHHHHhhcCCccchhh
Confidence            3467889999999999999988888888888888877 67776655 44478889988888888888888887765 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTF  121 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~  121 (235)
                      +.++.++...+|.++++.+++.+.. .+++...+++.+.+.
T Consensus       359 ~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  399 (1146)
T PRK08633        359 VLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVT  399 (1146)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            9999999999998888777665543 234555555544433

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=98.71  E-value=2.7e-07  Score=78.11  Aligned_cols=96  Identities=11%  Similarity=0.093  Sum_probs=75.5

Q ss_pred             hHHHhh-hhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHHHHHh
Q psy6058          11 ASSFVD-KYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATSLGAC   88 (235)
Q Consensus        11 ~g~l~d-r~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~~~~~   88 (235)
                      .+++.| |++.++.+..+.++..++.++.. ..++.+.+ +...++.|++.+...+....++.+..|+ +||++.|+++.
T Consensus       263 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~~~~l~~~g~~~~~p~~~~~~~~~~p~~~~g~~~g~~~~  340 (400)
T PRK11646        263 IARWSEKRFRLEHRLMAGLLIMSLSMFPIG-MVSNLQQL-FTLICLFYIGSIIAEPARETLSASLADARARGSYMGFSRL  340 (400)
T ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHHHHHHHHccHHHHHHhcCCcccchhhhhHHHH
Confidence            345554 56666677778878888877777 77777644 4446677888887778888888888876 59999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhhh
Q psy6058          89 GTGIGTFVYAPLTQYWIEEY  108 (235)
Q Consensus        89 ~~~~g~~l~~~~~~~~~~~~  108 (235)
                      ...+|..++|.+.+.+.++.
T Consensus       341 ~~~~g~~ig~~l~G~l~~~~  360 (400)
T PRK11646        341 GLALGGAIGYIGGGWLFDLG  360 (400)
T ss_pred             HHHHHHHhcccchHHHHHHH
Confidence            99999999999999998874

>PRK09848 glucuronide transporter; Provisional

Probab=98.70  E-value=6.3e-07  Score=76.94  Aligned_cols=105  Identities=15%  Similarity=0.203  Sum_probs=82.6

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc----
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK----   77 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~----   77 (235)
                      .+++.++++++.||+|+|+.+.++.++..++.++.. +.+  +.+.+ +...++.|+|.+...+...+..++..+.    
T Consensus       277 ~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~-~~~~~~~~~~-~~~~~l~g~G~~~~~~~~~al~~~~~~~~~~~  354 (448)
T PRK09848        277 TVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFF-WVSVWSLPVA-LVALAIASIGQGVTMTVMWALEADTVEYGEYL  354 (448)
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HcCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHh
Confidence            356788899999999999999999988888877776 543  44433 3446778899888888888877776542    


Q ss_pred             ----chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          78 ----KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        78 ----~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                          ++|...|+.+....+|..+++.+.+.+.+..|+
T Consensus       355 ~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~  391 (448)
T PRK09848        355 TGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY  391 (448)
T ss_pred             hCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                258889999999999999999999888766554

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=98.70  E-value=5.6e-07  Score=75.79  Aligned_cols=125  Identities=17%  Similarity=0.095  Sum_probs=78.2

Q ss_pred             chhhhh-HHHhhhhchhHHHHHHHHHH-HHHHHHHHH--hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           6 LLGPVA-SSFVDKYGCRWMTILGGIIS-GTGFVLSAT--VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         6 i~~~~~-g~l~dr~G~r~~~~~~~~~~-~~~~~~~~~--~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      +.+|+. ++..||+|||+..+++..+. .++......  ...+...+.+...++.++..+...+..-.+..+..+++ ++
T Consensus        53 l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~~~~~~~~~  132 (390)
T TIGR02718        53 LWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEHFNGRTLA  132 (390)
T ss_pred             HHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHhhhh
Confidence            345555 34577789888876665332 222222220  12221212233234444555556666666666666554 68


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      ...+....+..+|..+++...+++.+++|||..|++.+++.++..+..++
T Consensus       133 ~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~  182 (390)
T TIGR02718       133 KGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLW  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888889999999988899999999999999988776655554443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00889 2A0110 nucleoside transporter

Probab=98.66  E-value=3.2e-07  Score=78.14  Aligned_cols=116  Identities=8%  Similarity=-0.034  Sum_probs=72.9

Q ss_pred             cccchhhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhh-------
Q psy6058           3 VPLLLGPVASSFVDKYGC-RWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYW-------   74 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~-------   74 (235)
                      ...++++++|+++||+|+ |+++.++.++..++..+.. +.++++.++ ..+++.|++.+...+...+....+       
T Consensus        50 ~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~  127 (418)
T TIGR00889        50 AAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAA-QVTTPAGMF-PVLLANSLAYMPTIALTNSISYANLPQAGLD  127 (418)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH-HhcCHHHHH-HHHHHHHHHHccHHHHHHHHHHHHHhhcCCC
Confidence            457899999999999964 7788888888877777777 778887664 447888887665555444432111       


Q ss_pred             -ccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          75 -FDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        75 -~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                       ... .|.+..|      .+|.+++|.+++.+.....|.. |++.++..++..++
T Consensus       128 ~~~~~~~~r~~G------~lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~  175 (418)
T TIGR00889       128 VVTDFPPIRVMG------TIGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVF  175 (418)
T ss_pred             chhcCCCeeeeh------hHHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHH
Confidence             111 2334333      3677788888777743333543 44444444433333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=98.65  E-value=1.8e-07  Score=80.06  Aligned_cols=124  Identities=10%  Similarity=0.040  Sum_probs=74.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHH---HHHHHHHHhh--chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISG---TGFVLSATVA--NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~---~~~~~~~~~~--~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      ..++.+++|+++||+++++....+..+..   ++.++.. ..  .+.+.. ....++.|++.............+.+|+ 
T Consensus       300 ~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  377 (438)
T TIGR00712       300 GIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYW-MNPAGNPLVD-MICMIVIGFLIYGPVMLIGLHALELAPKK  377 (438)
T ss_pred             HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHH-hcCCCchHHH-HHHHHHHHHHHccHHHHHHHHHHHhcChh
Confidence            45788899999999964432222332221   2222222 21  233322 2223334443222212222345677776 


Q ss_pred             chhHHHHHHHhhHHHHH-HHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          78 KRTLATSLGACGTGIGT-FVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~-~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +|+++.|+.+....+|+ +++|.+.+.+.++.||...+++.+++.++..+..+
T Consensus       378 ~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  430 (438)
T TIGR00712       378 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  430 (438)
T ss_pred             heeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHH
Confidence            59999999988777764 68999999999999999999887765555544433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=98.65  E-value=2.2e-07  Score=77.20  Aligned_cols=123  Identities=17%  Similarity=0.112  Sum_probs=97.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      +.+++++++|++.||+|.|+++.++.++..+.++... +....... ..+.++.|...|..+...=++.++..|+ +-++
T Consensus       300 vA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~-~~~~~~~f-~i~gll~g~s~G~~qA~SRSy~~~lvp~~k~~~  377 (438)
T COG2270         300 VAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLI-FLEGELDF-WILGLLVGTSLGGAQASSRSYLARLVPKGKEGR  377 (438)
T ss_pred             HHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHH-HccccHHH-HHHHHHHHHhcchHHHHHHHHHHHhCCCccccc
Confidence            3468999999999999999999999998888877666 55443333 4447888999999999999999998877 4889


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~  127 (235)
                      ..|+++.....++.++|.+.+.+.+..| -|..+....++..+.++.
T Consensus       378 fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~  424 (438)
T COG2270         378 FFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLL  424 (438)
T ss_pred             eeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhh
Confidence            9999999999999999999999988765 455554444444433333

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.63  E-value=6.6e-07  Score=74.96  Aligned_cols=121  Identities=17%  Similarity=0.038  Sum_probs=79.8

Q ss_pred             cchhhhhHHHhhhhch---hHHHHH-HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058           5 LLLGPVASSFVDKYGC---RWMTIL-GGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~---r~~~~~-~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      ..+.+..++++||..|   |+.... ..++..++..... ...+.... +....+.|++....++....+.+|.+|++ |
T Consensus       237 ~~g~~g~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~r  314 (368)
T TIGR00903       237 LAGLIGVAVIPDRVARAGLRSIYIRAAALLIAAFFLALA-FELNRLAL-FAFIGIAGLLMLPAYAIIMDWIGKFCDKELH  314 (368)
T ss_pred             HHHHHHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHH-HccccHHH-HHHHHHHHHhhhhhHHHHHHHHHHhcchhhc
Confidence            3455556788888754   333232 3333444444444 44444323 33344556666666677778889999886 9


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +++.|+.+....+|+.++|.+.+.+..  +.+..|.+.++..++..+..+
T Consensus       315 gt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~  362 (368)
T TIGR00903       315 GKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL  362 (368)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999887773  677788777766555555443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>KOG4686|consensus

Probab=98.62  E-value=3.7e-07  Score=72.26  Aligned_cols=113  Identities=17%  Similarity=0.165  Sum_probs=80.2

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHH-HHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGT-GFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      +.++.+|+.|.++||+|++...+.+.++..+ +..... ++.  +.-++. ..+.|++...........++...|++ .|
T Consensus       312 Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~-Ft~--lsPy~~-m~~lGLsysllAcslWP~va~~vpE~qLG  387 (459)
T KOG4686|consen  312 ISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLF-FTF--LSPYTS-MTFLGLSYSLLACSLWPCVASLVPEEQLG  387 (459)
T ss_pred             hhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHH-hhh--ccHHHH-HHHHhhhHHHHHHHHhhhhhhhCCHHHhc
Confidence            3567899999999999999877766655444 433333 321  112234 45568777766555667777777775 99


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhC---cHHHHHHHHH
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYG---WRGTILLLAG  119 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~g---w~~~~~~~~~  119 (235)
                      ++.|..+...++|-++.|.+++++.++.|   |--+|.+...
T Consensus       388 Taygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~  429 (459)
T KOG4686|consen  388 TAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIG  429 (459)
T ss_pred             chHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHH
Confidence            99999999999999999999999998765   4444444333

>PRK09669 putative symporter YagG; Provisional

Probab=98.61  E-value=1.9e-06  Score=73.86  Aligned_cols=105  Identities=8%  Similarity=-0.019  Sum_probs=78.0

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-------
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV-ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD-------   76 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~-------   76 (235)
                      .++.+++++++||+|+|+.+.++.++..++.+..... .++.+.+ ++..++.|++.+...+...+++++..+       
T Consensus       278 ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~am~ad~~d~~e~~~G  356 (444)
T PRK09669        278 LFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFFIPPSNVWLI-FALNILFNFIQNLTTPLQWSMFSDVVDYEEKRSG  356 (444)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCcchHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Confidence            4677889999999999999988887666544333203 2455434 444678899999888888888887653       


Q ss_pred             cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          77 KK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        77 ~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                      ++ .|...++...+..+|.++++.+.+.+.+..|+
T Consensus       357 ~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~Gy  391 (444)
T PRK09669        357 RRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVDY  391 (444)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            12 45677888888899999999999998877665

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=98.61  E-value=3.7e-07  Score=75.82  Aligned_cols=110  Identities=15%  Similarity=0.012  Sum_probs=72.3

Q ss_pred             cccchhhhhHHHhhhhc-hhHH-HHHHH-HHHHHHHHHHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           3 VPLLLGPVASSFVDKYG-CRWM-TILGG-IISGTGFVLSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G-~r~~-~~~~~-~~~~~~~~~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      ...++.++.|++.||.+ +|+. +.... ....++..... .  ..+.+.. +...++.|+......+....++.+.+|+
T Consensus       264 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~  341 (379)
T TIGR00881       264 GGLVGTLLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYW-LNPAANPLMD-LICLFALGFLVYGPQMLIGVIASELAPK  341 (379)
T ss_pred             HcchhHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHh-cCcchhHHHH-HHHHHHHHHHHhhhhHHHHHHHHHhcCc
Confidence            35678899999999864 3332 22222 22222222222 2  2233323 3335556665544445555677888876


Q ss_pred             c-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHH
Q psy6058          78 K-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTI  114 (235)
Q Consensus        78 ~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~  114 (235)
                      + |+++.++.+....+|..++|.+.+.+.+++||++.|
T Consensus       342 ~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f  379 (379)
T TIGR00881       342 KAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGAF  379 (379)
T ss_pred             chhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence            5 999999999999999999999999999999998754

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=98.60  E-value=4.5e-07  Score=78.36  Aligned_cols=103  Identities=20%  Similarity=0.241  Sum_probs=81.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      +..++.++.|++.||+|||+.+.++.++..++.++.. +.    .+.+.+ +...++.|++.+...++......+..|+ 
T Consensus       303 ~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~g~g~~~~~~~~~~~~~~~~~~~  380 (485)
T TIGR00711       303 APMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA-FTFTPDTPFLAI-ALPQFIRGFGMGCFFMPLTTIALSGLPPH  380 (485)
T ss_pred             HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh-ccCCCCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            3467889999999999999999999888888877665 32    233433 3446778999888877777666666665 


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEE  107 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~  107 (235)
                      +|+.+.++.+....+|+.+++.+.+.+.++
T Consensus       381 ~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       381 KIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999988765

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.59  E-value=1.7e-06  Score=74.86  Aligned_cols=106  Identities=15%  Similarity=0.089  Sum_probs=78.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc---
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD---   76 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~---   76 (235)
                      ..++.++++++.||+|+|+.+.++.++.+++.+.....    ..+.+.+ ++..++.|++.+...+...+++++..+   
T Consensus       279 ~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~l~g~~~~~~~~~~~am~ad~id~~e  357 (473)
T PRK10429        279 NLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAPHNALLI-VIAGILLNIGTALFWVLQVIMVADTVDYGE  357 (473)
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            45778899999999999999988887766665554311    2334433 444677788888888888888887643   


Q ss_pred             ----cc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          77 ----KK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        77 ----~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                          ++ .|...+......-+|..+++.+.+.+.+..|+
T Consensus       358 ~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~Gy  396 (473)
T PRK10429        358 YKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIGY  396 (473)
T ss_pred             HhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence                22 45678888888999999999999998876554

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=98.59  E-value=4e-07  Score=86.82  Aligned_cols=119  Identities=12%  Similarity=-0.057  Sum_probs=87.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh--------------------chHHHHHHHHHHHHHhhhhh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA--------------------NSIEAQYITFGCIAGCGLSL   62 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~l~i~~~~l~G~~~g~   62 (235)
                      ++++++++.|+++++.++++.+..+.++..++.+... +.                    .+.+.+ ++..++.|++.+.
T Consensus       273 g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~  350 (1140)
T PRK06814        273 GVAVGSFLASKLSEGRITLLYVPIGALLMGLFGLDLA-FASSSVPAEPAQLKSILVFLSKRHGWRI-LIDLFGLAAAGGL  350 (1140)
T ss_pred             HHHHHHHHHHHHhCCceeeeeehHHHHHHHHHHHHHH-hcccccccccccccchhhhhcccccHHH-HHHHHHHHHHHHH
Confidence            4578889999999888777666666655555544333 32                    455544 4457778999988


Q ss_pred             hhHhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHh-hhCcHHHHHHHHHHHHH
Q psy6058          63 AYVTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIE-EYGWRGTILLLAGTFLQ  123 (235)
Q Consensus        63 ~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~-~~gw~~~~~~~~~~~~~  123 (235)
                      ..++..+++.+..|++ ||+++|+.++...+|..+++.+.+.+.+ ..++...+++.+++.++
T Consensus       351 ~~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~  413 (1140)
T PRK06814        351 YIVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALANLI  413 (1140)
T ss_pred             hHHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            8888888888888775 9999999999999999999999888874 44666666655544333

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=98.58  E-value=1e-06  Score=76.78  Aligned_cols=113  Identities=7%  Similarity=0.020  Sum_probs=83.1

Q ss_pred             HHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch---------HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058          12 SSFVDKYGCRWMTILGGIISGTGFVLSATVANS---------IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus        12 g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      +++.+|++....+.+|.++.+++.+... ...+         .+++ +...++.|+|+....+....++.+..|++ ||+
T Consensus       341 ~~l~~r~~~~~~~~~G~~l~~l~f~~l~-~~~~~~~~~~~vs~~~~-~~~~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~  418 (500)
T PRK09584        341 NKMGDRLPMPHKFAIGMVLCSGAFLVLP-LGAKFANDAGIVSVNWL-IASYGLQSIGELMISGLGLAMVAQLVPQRLMGF  418 (500)
T ss_pred             HHhCcCCCcHHHHHHHHHHHHHHHHHHH-HHHHhcCCCCccCHHHH-HHHHHHHHHHHHHHhHHHHHHHHHhCcHHHHHH
Confidence            5556666677888999999999988877 5544         3333 55689999999999999999999998886 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHh----------hhCcHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIE----------EYGWRGTILLLAGTFLQMCI  126 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~----------~~gw~~~~~~~~~~~~~~~~  126 (235)
                      ++|++.....+|..++..+......          ..+..+.|...++..++..+
T Consensus       419 ~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~  473 (500)
T PRK09584        419 IMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAV  473 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHH
Confidence            9999888887887777666643221          11356777776665443333

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=98.58  E-value=5.6e-07  Score=78.34  Aligned_cols=102  Identities=16%  Similarity=0.146  Sum_probs=81.6

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r   79 (235)
                      ..+++++.|++.||+|+|+.+..+.++..++.++.. ..   ++.+.. ....++.|+|.|...++....+.+..|+ ++
T Consensus       308 ~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~-~~~~~~~~~~~-~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~  385 (495)
T PRK14995        308 SGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLA-MTDFSTQQWQA-WGLMALLGFSAASALLASTSAIMAAAPPEKA  385 (495)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH-HhcCCCchHHH-HHHHHHHHHhHHHHHHHHHHHHHhcCCHHhc
Confidence            467889999999999999999989888877776554 32   344433 4447788999998888787777777666 59


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEE  107 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~  107 (235)
                      +.+.++++....+|..+|+.+.+.+.++
T Consensus       386 g~~~~~~~~~~~lG~~~G~ai~g~i~~~  413 (495)
T PRK14995        386 AAAGAIETMAYELGAGLGIAIFGLLLSR  413 (495)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888653

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=98.58  E-value=7.6e-07  Score=75.20  Aligned_cols=122  Identities=10%  Similarity=-0.020  Sum_probs=87.5

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc--hhH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK--RTL   81 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~--rg~   81 (235)
                      ..+++++.+++.||+++++++..+.+ ..+..+... +.++++.. +...++.|++.+...++....+.+..|++  +|+
T Consensus       254 ~i~g~~~~~~l~~~~~~~~~~~~g~~-~~~~~~~~~-~~~~~~~~-~~~~~~~G~~~g~~~~~~~~~~q~~~~~~~~~g~  330 (393)
T PRK11195        254 IAVGAGAAARLVTLETVLRVLPAGIL-MGLVVLLMA-LQHSLLPA-YPLLILIGALGGFFVVPMNALLQHRGHVLVGAGH  330 (393)
T ss_pred             HHHHHHHHHHHhcCCcccchHHHHHH-HHHHHHHHH-HHhHHHHH-HHHHHHHHHhhhhhhhhHHHHHHhhCcccccchh
Confidence            45778888899999998888777753 344444445 55665533 44466778888887777777777766654  699


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +.++.+....+|..++..+.+.+ +.+|-+..+++.+...++...+.+
T Consensus       331 ~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  377 (393)
T PRK11195        331 SIAVQNFNENLAMLLMLGLYSLL-VKLGVPVVAVIVGFGLLVALAMAL  377 (393)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999888754 677888777776655544444433

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=98.55  E-value=1.4e-06  Score=75.42  Aligned_cols=115  Identities=12%  Similarity=-0.004  Sum_probs=88.4

Q ss_pred             HHhhh-hchhHHH--HHHHHHHHHHHHHHHHh---------hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058          13 SFVDK-YGCRWMT--ILGGIISGTGFVLSATV---------ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus        13 ~l~dr-~G~r~~~--~~~~~~~~~~~~~~~~~---------~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      ++.+| .+++...  .+|.++.+++.+..+ +         ..+++++ +...++.|+|.....+....++++..|++ |
T Consensus       338 ~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~-~~~~~~~~~~~~s~~~~-i~~~~~~~~ge~~~~p~~~~~~~~~aP~~~~  415 (475)
T TIGR00924       338 RLGRKGKDPTTPLKFTLGMLFCGASFLTFA-ASIWFADAGGLTSPWFM-VLIYLFQTLGELMISPLGLSWWTKIAPQRLM  415 (475)
T ss_pred             HHHhCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCccCHHHH-HHHHHHHHHHHHHHhHHHHHHHHHhCCHHHH
Confidence            44444 3333433  778888888877766 4         3467755 55688999999999999999999998886 9


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      |+.+|++..+..+|..+++.+.....+..+|.+.|...++..++..++.+
T Consensus       416 g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (475)
T TIGR00924       416 GQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGVVMA  465 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988877777888888777766555544443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK11043 putative transporter; Provisional

Probab=98.55  E-value=3e-06  Score=71.56  Aligned_cols=108  Identities=13%  Similarity=-0.005  Sum_probs=74.2

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHH--h--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccch
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSAT--V--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKR   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~--~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~r   79 (235)
                      ..++.++.+++.||+|+|+.+..+.....++.+....  .  .++.+.+ +....+.|++.+..++.......+..|+++
T Consensus       251 ~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  329 (401)
T PRK11043        251 FLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSHPSLVPL-LIPFCVMAAANGAIYPIVVAQALRPFPQAT  329 (401)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhCcccC
Confidence            3466777889999999998766655544444332220  1  2344333 333556688888888877777767778789


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHH
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRG  112 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~  112 (235)
                      |++.++++.....+..+++.+.+.+.+......
T Consensus       330 g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~~~~  362 (401)
T PRK11043        330 GKAAALQNTLQLGLCFLASLLVSALISTPLLTT  362 (401)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHccCCChhHH
Confidence            999999998888888888888888876533333

>TIGR00896 CynX cyanate transporter

Probab=98.54  E-value=1e-06  Score=73.10  Aligned_cols=104  Identities=9%  Similarity=0.002  Sum_probs=78.7

Q ss_pred             cccchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-cc-ch
Q psy6058           3 VPLLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DK-KR   79 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~-~r   79 (235)
                      +..++.++.|++.||+ +||+.+.++.++..++.++.. +..+.... . ..++.|++.+..++.....+.+.. ++ ++
T Consensus       244 ~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~-~~~l~g~~~g~~~~~~~~~~~~~~~~~~~~  320 (355)
T TIGR00896       244 AQAASALLIPALARRVKDQRGIVAVLAVLQLVGLCGLL-FAPMHGLW-A-WALVLGLGQGGAFPLALTLIGLRSRQAAQA  320 (355)
T ss_pred             HHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHHHHHH-HhhhhHHH-H-HHHHHHHhhhhHhHHHHHHHHHhccCHHHH
Confidence            3568899999999999 566777777777777776666 55443322 2 246779999888887777666544 34 47


Q ss_pred             hHHHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058          80 TLATSLGACGTGIGTFVYAPLTQYWIEEYG  109 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~~~~~~~~~~~~g  109 (235)
                      +...++.+....+|..++|.+.+.+.++.|
T Consensus       321 g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g  350 (355)
T TIGR00896       321 AALSAMAQSIGYLLAALGPLFVGVLHDISG  350 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888999888888999999999999998876

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>KOG0569|consensus

Probab=98.54  E-value=2.3e-06  Score=73.33  Aligned_cols=124  Identities=15%  Similarity=0.076  Sum_probs=86.9

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---ch-H--HH--HHHHHHHHHHhhhhhhh-HhHHHHHHhh
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NS-I--EA--QYITFGCIAGCGLSLAY-VTAVVSIAYW   74 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~-~--~~--l~i~~~~l~G~~~g~~~-~~~~~~~~~~   74 (235)
                      ..+.++++.++.||+|||+.++++..++.+..+++. ..   .+ .  |.  ..++..++..++.+... |...-+.+|.
T Consensus       318 ~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~-~~~~l~~~~~~~~~y~~i~~~~~~~~~f~~G~gpi~~fi~aEL  396 (485)
T KOG0569|consen  318 NLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMS-IALFLSNSFGSWLSYLCIAAIFLFIISFAIGPGPIPWFIGAEL  396 (485)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHHhhhcCCCchhHHHHHHh
Confidence            457788999999999999999999999888887776 33   11 1  21  12343444455554443 4445677899


Q ss_pred             cccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          75 FDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        75 ~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +|.+ |..+.++......++.++.......+.+.+|- +.|+...+.+++..+..+
T Consensus       397 f~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~  451 (485)
T KOG0569|consen  397 FPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLY  451 (485)
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHH
Confidence            9886 99999999999999988887877777777775 555555555544444433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=98.53  E-value=7.4e-07  Score=76.85  Aligned_cols=125  Identities=13%  Similarity=0.002  Sum_probs=74.4

Q ss_pred             cccchhhhhHHHhhhhchhHH--------HHHHHHHHHHH--HHHHHHh-hchHHHHHHHHHHHHHhhhhhhhHhHHHHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWM--------TILGGIISGTG--FVLSATV-ANSIEAQYITFGCIAGCGLSLAYVTAVVSI   71 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~--------~~~~~~~~~~~--~~~~~~~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~   71 (235)
                      +..++.++.|+++||+++|+.        +..+......+  .+... . ..+.+.. +....+.+.+.+...+......
T Consensus       309 ~~~i~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~  386 (465)
T TIGR00894       309 FAWLCSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALP-YLSAAFYLT-IIILTLANAVSSGPLAGVLINS  386 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-HcCCchHHH-HHHHHHHHHHhhhhhhhhhhch
Confidence            346788999999999865421        11111111111  11112 2 2233322 3323333444443444433444


Q ss_pred             HhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhh---CcHHHHHHHHHHHHHHHHHHh
Q psy6058          72 AYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEY---GWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        72 ~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~---gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      .+..|+.+|.+.++.+....+|+.++|.+.+.+.+..   +|+..|++.++..++..++..
T Consensus       387 ~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~  447 (465)
T TIGR00894       387 LDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL  447 (465)
T ss_pred             hhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence            5667778999999999999999999999999887653   378888877766665554433

>KOG2816|consensus

Probab=98.51  E-value=1.4e-06  Score=74.76  Aligned_cols=121  Identities=17%  Similarity=0.195  Sum_probs=96.6

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHh--hhhhhhHhHHHHHHhhccc-chh
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGC--GLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~--~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      ..+.+++.|.++||+|||..+....+...+..++.. +.. +| .++    +.++  +.+..+....+++++...+ +|.
T Consensus        75 ~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~-~~~-~~-~~~----~~~l~g~~~~~~s~~~a~vadis~~~~R~  147 (463)
T KOG2816|consen   75 TLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLL-FQG-YW-FFL----LLGLSGGFSAIFSVGFAYVADISSEEERS  147 (463)
T ss_pred             HHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHH-HHH-HH-Hhh----hcccccchhhhhhhhhhheeeccchhHHH
Confidence            467889999999999999999999999998888877 544 33 322    3333  3444566677888887655 499


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      ...|+....+..+..++|.+++++....|.-..|.+.++..++..+...+.
T Consensus       148 ~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~  198 (463)
T KOG2816|consen  148 SSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLF  198 (463)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhc
Confidence            999999999999999999999999999999999998888777776665543

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=98.51  E-value=3.6e-06  Score=67.02  Aligned_cols=115  Identities=24%  Similarity=0.336  Sum_probs=86.3

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc--chh
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS--IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK--KRT   80 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~--~rg   80 (235)
                      .++.++.|.+.||+|||+.+..+.....++.+... +..+  .+.+ +..|++.|++.+...+....++.++.|+  +|+
T Consensus        53 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  130 (338)
T COG0477          53 AIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLA-LAPNVGLALL-LILRLLQGLGGGGLLPVASALLSEWFPEATERG  130 (338)
T ss_pred             HHHhhhhhhccccccchHHHHHHHHHHHHHHHHHH-hCccchHHHH-HHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHH
Confidence            45568999999999999888888876556555555 5554  5544 6668888999998889999999999986  688


Q ss_pred             HHHHHHHh-hHHHHHHHHHHHHHHHHhh--hCcHHHHHHHHHHH
Q psy6058          81 LATSLGAC-GTGIGTFVYAPLTQYWIEE--YGWRGTILLLAGTF  121 (235)
Q Consensus        81 ~~~~~~~~-~~~~g~~l~~~~~~~~~~~--~gw~~~~~~~~~~~  121 (235)
                      ...+.... ...+|..+++.+++.+...  .+|+..+.......
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (338)
T COG0477         131 LAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLG  174 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            88888777 5778888888776666544  57888655544433

>PRK09669 putative symporter YagG; Provisional

Probab=98.50  E-value=1.1e-06  Score=75.39  Aligned_cols=123  Identities=12%  Similarity=0.069  Sum_probs=79.7

Q ss_pred             ccchhhhhHHHhhh----hchh-HHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058           4 PLLLGPVASSFVDK----YGCR-WMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIA   72 (235)
Q Consensus         4 ~~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~   72 (235)
                      -++..|+.|+++||    +||| +.++++....+++.++.. ..++      .+.. .+..++.+.+......+..++.+
T Consensus        58 dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f-~~p~~~~~~~~~~~-~~~~~l~~~~~t~~~ip~~al~~  135 (444)
T PRK09669         58 DAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTF-YTPDFGATGKIIYA-CVTYILLSLVYTAINVPYCAMPG  135 (444)
T ss_pred             HHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHH-hCCCCCcchHHHHH-HHHHHHHHHHHHhhcchHHHhHH
Confidence            46788999999999    6764 556677777767665544 4432      2223 33345556666667777778888


Q ss_pred             hhcc--cchhHHHHHHHhhHHHHHHHHHHHHHHHHh-------hhCcHHHHHHHHHHHHHHHHHH
Q psy6058          73 YWFD--KKRTLATSLGACGTGIGTFVYAPLTQYWIE-------EYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        73 ~~~~--~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      ++.+  ++|++..++...+..+|..+++.+...+..       ..||+..+.+.+++.++..+..
T Consensus       136 ~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~  200 (444)
T PRK09669        136 AITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCC  200 (444)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHH
Confidence            8763  459988888877777777777665444332       2467777776666555444433

>KOG2504|consensus

Probab=98.50  E-value=3.6e-07  Score=79.39  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=102.9

Q ss_pred             cchhhhhHHHhhhhc--hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           5 LLLGPVASSFVDKYG--CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      .++.++.|+++|+..  ++.+..++.+..+++.+... +.++++.+ +...++.|++.|.........+.+..+. +-..
T Consensus       347 i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p-~~~~~~~l-~~~~~~fG~~~g~~~~l~~~i~~~~~g~~~l~~  424 (509)
T KOG2504|consen  347 IIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLP-FATTYVGL-IVFSILFGFCVGSFSSLTPVILVDLVGLEKLSN  424 (509)
T ss_pred             hhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcChhhcch
Confidence            578899999999987  55666677777777777777 88999866 6668899999998877777788888766 4889


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHHHhh
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~~~~  130 (235)
                      +.|+...+.+++..+||++++.+.+..| |...|+..+++.++...++++
T Consensus       425 a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~~  474 (509)
T KOG2504|consen  425 AYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLLI  474 (509)
T ss_pred             HHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHHH
Confidence            9999999999999999999999998887 999999988877776666554

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=98.50  E-value=4.2e-06  Score=70.45  Aligned_cols=109  Identities=11%  Similarity=0.030  Sum_probs=66.5

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~   82 (235)
                      ..++.++.+++.||+|+|+.+.++.++..++.++.. +.++.+.. +....+.+.|.+..++..  ...+..|. +|+  
T Consensus       252 ~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~g~~~~~~~~--~~~~~~~~~~~~--  325 (392)
T PRK10473        252 SMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA-LSPSHAVS-LFGITLICAGFSVGFGVA--MSQALGPFSLRA--  325 (392)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHhHHH--HHHHhccCcccc--
Confidence            457789999999999999999999988888887777 65544422 222333344443333322  22233343 332  


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAG  119 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~  119 (235)
                       +.......++..+++.+++++.+..|+.....+.+.
T Consensus       326 -g~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~  361 (392)
T PRK10473        326 -GVASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI  361 (392)
T ss_pred             -cHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence             333344456666777777777777777655544443

>KOG3764|consensus

Probab=98.46  E-value=9.2e-07  Score=72.96  Aligned_cols=127  Identities=13%  Similarity=0.086  Sum_probs=95.4

Q ss_pred             cccchhhhhHHHhhhhc--hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-c---
Q psy6058           3 VPLLLGPVASSFVDKYG--CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-D---   76 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~---   76 (235)
                      .+.+++.+.|.+.||++  |......+.+...+++...- +++++.++ ++-++..|++.+.............. +   
T Consensus       318 ~y~ig~~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP-~~~~~~~L-~vp~~~l~~~i~~~dasl~P~l~~lvd~rh~  395 (464)
T KOG3764|consen  318 SYAIGTNLFGKLADKYPHLRWLLSLGGLATVGVSSGPIP-FATSIAQL-WVPNFGLGFGIGLADASLIPTLGYLVDPRHV  395 (464)
T ss_pred             chhccCchHHHHHHhcCchhHHHHHHHHHHHHHHhchhH-hhhhHHHH-hhhhHHHHHHHHHHHHHHhhhhHHhcchhhc
Confidence            46899999999999999  54445555556666666666 78888877 44466667777666666555554433 1   


Q ss_pred             c---chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          77 K---KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        77 ~---~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      +   -.|...++...++.+|.++||.+++.+.+..|++|.-.+.++..++...++.+.
T Consensus       396 s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll  453 (464)
T KOG3764|consen  396 SGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL  453 (464)
T ss_pred             cccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence            1   258899999999999999999999999999999999988888777666665443

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=98.44  E-value=4.2e-06  Score=72.76  Aligned_cols=123  Identities=11%  Similarity=0.042  Sum_probs=87.2

Q ss_pred             cchhhhhHHHhhhhchhH-------HHHHHHHHHHHHHHHHH----Hhh-----chHHHHHHHHHHHHHhhhhhhhHhHH
Q psy6058           5 LLLGPVASSFVDKYGCRW-------MTILGGIISGTGFVLSA----TVA-----NSIEAQYITFGCIAGCGLSLAYVTAV   68 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~-------~~~~~~~~~~~~~~~~~----~~~-----~~~~~l~i~~~~l~G~~~g~~~~~~~   68 (235)
                      .+.+|+.+++.||+++|+       -+.+|.++.+++.+..+    ...     .+.+++ +..-++.|+|.+...++..
T Consensus       323 ii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~-i~~~~l~g~Ge~~~~~~g~  401 (489)
T PRK10207        323 VVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQGLTSPWFI-VLVYLFQSLGELFISALGL  401 (489)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccCHHHH-HHHHHHHHHHHHHHhHHHH
Confidence            477888999999999886       36677777776664331    011     234544 4557888999999999999


Q ss_pred             HHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHh----------hhCcHHHHHHHHHHHHHHHHHH
Q psy6058          69 VSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIE----------EYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        69 ~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~----------~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      .++.+..|++ +|.++|++.....+|+.++..++.....          .....+.|...++..++..++.
T Consensus       402 ~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~  472 (489)
T PRK10207        402 AMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVM  472 (489)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            9999888886 9999999999999999999888765521          0124556666665444444443

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.39  E-value=2.9e-06  Score=72.49  Aligned_cols=106  Identities=17%  Similarity=0.239  Sum_probs=87.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc---
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK---   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~---   77 (235)
                      ...++.+++++++||+|+|+.+..+.++.+++.++.. +.+  +.+.+ ++..++.|++.+..++...++++|..+.   
T Consensus       272 ~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~i~~~l~gi~~~~~~~~~~a~~ad~id~~e~  349 (428)
T PF13347_consen  272 ASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLF-FLGPGSPWLV-LILFILAGIGYGAFFVIPWAMLADVIDYDEW  349 (428)
T ss_pred             HHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHH-HHHhhhHHHH-HHHHHHhHhhhcccccccccccccchhhHHH
Confidence            4567889999999999999999999999999998887 654  66655 5557888999999888888888876541   


Q ss_pred             -----chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          78 -----KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        78 -----~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                           +.|...|+.....-+|..+++.+.+.+.+..|+
T Consensus       350 ~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy  387 (428)
T PF13347_consen  350 KTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGY  387 (428)
T ss_pred             hcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCc
Confidence                 257888899999999999999998888765543

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=98.36  E-value=1.1e-05  Score=72.11  Aligned_cols=125  Identities=11%  Similarity=-0.033  Sum_probs=94.1

Q ss_pred             ccchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhch-----H--HHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058           4 PLLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANS-----I--EAQYITFGCIAGCGLSLAYVTAVVSIAYWF   75 (235)
Q Consensus         4 ~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~-----~--~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~   75 (235)
                      ..+.+.++|+++|+ +|+++.++++.++..++.++.+ +...     .  ..+.+.+..+..+|.|+.-+...+...+-+
T Consensus        36 ~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~lla-i~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gdqf  114 (654)
T TIGR00926        36 CYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLS-FGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGDQF  114 (654)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-hccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHhhc
Confidence            35678889999998 6999999999999999988887 5421     1  112233356667888888888888888766


Q ss_pred             cc-c---hhHHHHHHHhhHHHHHHHHHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHHHh
Q psy6058          76 DK-K---RTLATSLGACGTGIGTFVYAPLTQYWIEEY-------GWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        76 ~~-~---rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-------gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ++ +   |-....+++.+.++|+++++.+.+++.+.+       +|...|.+.+++.++.+++..
T Consensus       115 ~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~  179 (654)
T TIGR00926       115 EERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFM  179 (654)
T ss_pred             CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence            43 2   567778888999999999999998887543       699999888777666655543

>KOG0252|consensus

Probab=98.36  E-value=2.8e-07  Score=77.26  Aligned_cols=127  Identities=19%  Similarity=0.180  Sum_probs=94.4

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhch-H---HHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANS-I---EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~-~---~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      +..+-.+...++|++||+++.+.|.+++++..+..+ ...+ .   ...++.+.+.+-++.-+.......+-+|.||.+ 
T Consensus       361 ~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~-~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv  439 (538)
T KOG0252|consen  361 TVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIA-GPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV  439 (538)
T ss_pred             cCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHc-CCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence            344667778899999999999999999999988888 6655 1   112122122211222222344445678999998 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHh-----hhCcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIE-----EYGWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~-----~~gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      |++..|+.....-.|..++.....++.+     ..|.+.++++.+.+.++..+..+++
T Consensus       440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~  497 (538)
T KOG0252|consen  440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLI  497 (538)
T ss_pred             hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEe
Confidence            9999999999999999999999999988     6789999999888887776665544

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.34  E-value=3.3e-06  Score=69.52  Aligned_cols=92  Identities=15%  Similarity=0.109  Sum_probs=72.2

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chh
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRT   80 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg   80 (235)
                      .++.++.|++.||+|+|+...+......++.+... ..   .+.... +...++.|++.+...+....++.+..|+ +||
T Consensus       257 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g  334 (352)
T PF07690_consen  257 IIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL-LLPFSSSPVWL-IIALFLIGFGFGIVFPILFSLIQELVPPEYRG  334 (352)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC-CSHHHCHHHHH-HHHHHHHHHHHHHHCHHHHHHHHCCCHTCHHH
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            45688999999999988777777776666665554 33   233434 3446778999999999999999998876 499


Q ss_pred             HHHHHHHhhHHHHHHHHH
Q psy6058          81 LATSLGACGTGIGTFVYA   98 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~   98 (235)
                      ++.|+.+....+|..++|
T Consensus       335 ~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  335 TAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCC
Confidence            999999999999999887

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00901 2A0125 AmpG-related permease

Probab=98.32  E-value=3.9e-06  Score=69.67  Aligned_cols=86  Identities=12%  Similarity=0.016  Sum_probs=67.0

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-----------chHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-----------NSIEAQYITFGCIAGCGLSLAYVTAVVSIA   72 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~   72 (235)
                      ..++.+++|++.||+|+|+.+..+.++..++..+.. +.           ++.+.+ +...++.+++.+...+....++.
T Consensus       258 ~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~  335 (356)
T TIGR00901       258 AILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFV-WLASNGHHDGITFPHLLML-FLTITLEAVTGGLGTVAFVAFLS  335 (356)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHhcCcccccccchHHHH-HHHHHHHHHHhHHHHHHHHHHHH
Confidence            357888999999999999998888888777766554 32           233433 44467779999999999999999


Q ss_pred             hhcccc-hhHHHHHHHhhHH
Q psy6058          73 YWFDKK-RTLATSLGACGTG   91 (235)
Q Consensus        73 ~~~~~~-rg~~~~~~~~~~~   91 (235)
                      +.+|++ ||+..|++++..+
T Consensus       336 ~~~p~~~~g~~~g~~~~~~~  355 (356)
T TIGR00901       336 KLSNPKFGATQMALLSSLSA  355 (356)
T ss_pred             HhcCCCccHHHHHHHHHHHh
Confidence            988775 9999999877543

>KOG2325|consensus

Probab=98.32  E-value=4.8e-06  Score=71.16  Aligned_cols=101  Identities=16%  Similarity=0.107  Sum_probs=77.4

Q ss_pred             cccchhhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHhh---c-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHh-hcc
Q psy6058           3 VPLLLGPVASSFVDKYGC-RWMTILGGIISGTGFVLSATVA---N-SIEAQYITFGCIAGCGLSLAYVTAVVSIAY-WFD   76 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~---~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~-~~~   76 (235)
                      +.++++++.|+...|.+. |+.++.|.++.++++++...+.   + ..+ +++++|++.|+|.|.. ...=.|++. ..+
T Consensus        83 g~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y-~mL~~R~l~Gvg~~n~-a~lR~Y~a~~s~~  160 (488)
T KOG2325|consen   83 GHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKY-LMLVARILTGVGVGNF-AVLRAYIADASTV  160 (488)
T ss_pred             HHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHcCcCcccH-HHHHHHHHhccCc
Confidence            457889999999999885 7788999999999998883132   3 334 3356699999987754 444467776 467


Q ss_pred             cchhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058          77 KKRTLATSLGACGTGIGTFVYAPLTQYWI  105 (235)
Q Consensus        77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~  105 (235)
                      ++|.++.+....+..+|..+||.+...+.
T Consensus       161 ~dR~rA~a~~~~~~vlg~ilGp~~q~~f~  189 (488)
T KOG2325|consen  161 EDRPRAFAATSGGFVLGIILGPTIQLAFT  189 (488)
T ss_pred             cchHHHHHHhhhHHHHHHHHhHHHHHHHh
Confidence            78999999988888889889888876654

>PRK10429 melibiose:sodium symporter; Provisional

Probab=98.31  E-value=8.8e-06  Score=70.47  Aligned_cols=117  Identities=14%  Similarity=0.166  Sum_probs=74.3

Q ss_pred             cchhhhhHHHhh----hhch-hHHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHHh
Q psy6058           5 LLLGPVASSFVD----KYGC-RWMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIAY   73 (235)
Q Consensus         5 ~i~~~~~g~l~d----r~G~-r~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~   73 (235)
                      ++..|+.|+++|    |+|| |+.++++....+++.+++. ..++      ++.+ ++..++.+++.....++..++..+
T Consensus        56 ai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf-~~p~~~~~~~~~~~-~~~~~l~~~~~t~~~ip~~al~~~  133 (473)
T PRK10429         56 AINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLF-SAHLFEGTAQYVFV-CVTYILWGMTYTIMDIPFWSLVPT  133 (473)
T ss_pred             HHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHH-cCCCCCccHHHHHH-HHHHHHHHHHHHHHcchHHhhhHH
Confidence            567889999999    5698 5667778777777765554 4331      1222 333456677787788888888888


Q ss_pred             hc--ccchhHHHHHHHhhHHHHHHHHHHHHHHHHhh-------hCcHHHHHHHHHHHHH
Q psy6058          74 WF--DKKRTLATSLGACGTGIGTFVYAPLTQYWIEE-------YGWRGTILLLAGTFLQ  123 (235)
Q Consensus        74 ~~--~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~-------~gw~~~~~~~~~~~~~  123 (235)
                      ..  +++|.+..++-..+..+|+.+.+.+...+.+.       .+|+....+.+++.++
T Consensus       134 lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~  192 (473)
T PRK10429        134 LTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIV  192 (473)
T ss_pred             hCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHH
Confidence            76  44599988886666677766655554433222       2455555554444433

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=98.31  E-value=1.5e-05  Score=58.25  Aligned_cols=98  Identities=13%  Similarity=0.055  Sum_probs=77.9

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ..+++++.+.+.+++|.|+.+++|.+...+-.+... . ++.+.+ +...++.|++.+..++....++.+...++ +++.
T Consensus        50 ~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~-~-~~~~~l-~~~s~l~G~~~a~lW~aqg~ylt~~s~~~~~~~~  126 (156)
T PF05978_consen   50 FAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFF-Y-PNSYTL-YPASALLGFGAALLWTAQGTYLTSYSTEETIGRN  126 (156)
T ss_pred             HHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-h-hhHHHH-HHHHHHHhhhhHHhhHhhhHHHHHcCCHHHHhhH
Confidence            467788899999999999999999998887666654 3 444445 44478899999999999999999987665 9999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYW  104 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~  104 (235)
                      .+++......+.++|..+.-.+
T Consensus       127 ~~ifw~i~~~s~i~G~~~~~~~  148 (156)
T PF05978_consen  127 TGIFWAIFQSSLIFGNLFLFFI  148 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9988877777777776665444

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=98.30  E-value=2.8e-05  Score=65.49  Aligned_cols=104  Identities=10%  Similarity=-0.058  Sum_probs=68.0

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHH-HHHHHHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISG-TGFVLSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTL   81 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~-~~~~~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~   81 (235)
                      .+++++.+++.||++++.......+... +...... .  ..+.+.+ +...++.|++.+...+....+..+.+|+++|.
T Consensus       257 ~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~  334 (394)
T PRK11652        257 FFGAWFAGRPNKRFSTLMWQSVICCLLAGLLMWIPG-WFGVMNVWTL-LVPAALFFFGAGMLFPLATSGAMEPFPYLAGT  334 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccchH
Confidence            4556667777777763332222222111 2111111 1  1233433 44467788888888888888888888888999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                      +.++.+....+|..+++.+++.+.....+
T Consensus       335 ~~~~~~~~~~lg~~~~~~~~~~~~~~~~~  363 (394)
T PRK11652        335 AGALLGGLQNIGSGLAALLSAMLPQTGQF  363 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCchH
Confidence            99999999999999999998887655333

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=98.28  E-value=3.2e-05  Score=64.57  Aligned_cols=98  Identities=21%  Similarity=0.073  Sum_probs=59.7

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh---hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchh
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV---ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRT   80 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg   80 (235)
                      ..++.++.|++.||+|+|+.+..+..+..+..+.....   ..+.+.+ +....+.+.+.+.........+.+..|++++
T Consensus       243 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  321 (377)
T PRK11102        243 LFVMTIINSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLDLGFWAL-VVGVAAFVGCVSMISSNAMAVILDEFPHMAG  321 (377)
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-HHHHHHHHHHHHHhhHHHHHHHhccccccch
Confidence            45778899999999999999888887654433322201   1233322 2223333444444444555566667787799


Q ss_pred             HHHHHHHhh-HHHHHHHHHHHHH
Q psy6058          81 LATSLGACG-TGIGTFVYAPLTQ  102 (235)
Q Consensus        81 ~~~~~~~~~-~~~g~~l~~~~~~  102 (235)
                      ++.++.+.. ..+|..+++.+..
T Consensus       322 ~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        322 TASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            999886543 4566666666543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=98.28  E-value=6.7e-06  Score=68.08  Aligned_cols=120  Identities=13%  Similarity=0.037  Sum_probs=92.9

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhH
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTL   81 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~   81 (235)
                      .+.++|-+++.++..|+...+.+.+.+++..+.++..+ ++++.+.++ . .++.|+..+..+|...+...+..|++ ..
T Consensus       283 ~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~-l~~g~v~~~-~-l~~ig~F~simfPTIfslal~~l~~~-ts  358 (422)
T COG0738         283 VGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVA-LIGGVVALY-A-LFLIGLFNSIMFPTIFSLALKNLGEH-TS  358 (422)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHH-HhcChHHHH-H-HHHHHHHhHHHHHHHHHHHHhccCcc-cc
Confidence            34567778888888999999999999988888888888 888876553 3 47779999999999999988888743 33


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMC  125 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~  125 (235)
                      ..|..-.+..+|+++.|.+.+++.|++|-...+.....++.+..
T Consensus       359 ~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV  402 (422)
T COG0738         359 VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV  402 (422)
T ss_pred             ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence            33444555678999999999999999998888774444443333

>TIGR00788 fbt folate/biopterin transporter

Probab=98.26  E-value=5.8e-06  Score=71.50  Aligned_cols=105  Identities=14%  Similarity=0.058  Sum_probs=83.4

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhh
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYW   74 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~   74 (235)
                      .+++..+.+++.+|++.|+++.++.++..++.+......         ++.+ +++...++.+++.+..+.+...++.+.
T Consensus       301 ~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~gi~~~~-~~~~~~~l~~~~~g~~~~~~~~~~~~~  379 (468)
T TIGR00788       301 SLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFGISDEV-FVLGDSIIAEVLAQLKFMPFLVLLARL  379 (468)
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccCCCCee-eeeehhHHHHHHHHHHHccHHHHHHHh
Confidence            356778888888999999999999998888775442011         2222 223446777888888889999999998


Q ss_pred             cccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058          75 FDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYG  109 (235)
Q Consensus        75 ~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g  109 (235)
                      .|++ +|+..+++++..++|..+++.+++.+.+..|
T Consensus       380 ~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g  415 (468)
T TIGR00788       380 CPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG  415 (468)
T ss_pred             CCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            8876 9999999999999999999999999988877

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF13347 MFS_2: MFS/sugar transport protein

Probab=98.22  E-value=2.7e-06  Score=72.68  Aligned_cols=124  Identities=18%  Similarity=0.196  Sum_probs=86.8

Q ss_pred             ccchhhhhHHHhh----hhchhHH-HHHHHHHHHHHHHHHHHhh-c-h------HHHHHHHHHHHHHhhhhhhhHhHHHH
Q psy6058           4 PLLLGPVASSFVD----KYGCRWM-TILGGIISGTGFVLSATVA-N-S------IEAQYITFGCIAGCGLSLAYVTAVVS   70 (235)
Q Consensus         4 ~~i~~~~~g~l~d----r~G~r~~-~~~~~~~~~~~~~~~~~~~-~-~------~~~l~i~~~~l~G~~~g~~~~~~~~~   70 (235)
                      -++..|+.|.++|    |+|||+. +++|....+++.+++. .. + +      ...+ .+..++..++......+..++
T Consensus        50 dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf-~~~p~~~~~~~~~~~~-~~~~~l~~~~~t~~~i~~~al  127 (428)
T PF13347_consen   50 DAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLF-SPPPAGLSFTAKLVWL-FVFYILFDIAYTFVQIPYNAL  127 (428)
T ss_pred             hhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhh-ccccchhhhhhHHHHH-HHHHHHHHHhhhhccCchhhc
Confidence            4577899999999    7896655 5577788888877776 44 3 1      1222 333556688888888888889


Q ss_pred             HHhhccc--chhHHHHHHHhhHHHHHHHHHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHHHh
Q psy6058          71 IAYWFDK--KRTLATSLGACGTGIGTFVYAPLTQYWIEEY-------GWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        71 ~~~~~~~--~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-------gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ..+..+.  +|.+..+.-..+..+|.++...+.+.+.+..       +|++..++.+++.++..+..+
T Consensus       128 ~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~  195 (428)
T PF13347_consen  128 IPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITF  195 (428)
T ss_pred             CccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhh
Confidence            9998753  5999999988888888876666666555332       588887777766655544433

>TIGR01272 gluP glucose/galactose transporter

Probab=98.20  E-value=2.1e-05  Score=64.36  Aligned_cols=89  Identities=18%  Similarity=0.063  Sum_probs=70.2

Q ss_pred             hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhh------------
Q psy6058          41 VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEE------------  107 (235)
Q Consensus        41 ~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~------------  107 (235)
                      ...+++.+ ++.-++.|.|.+...+..+.+++...++ ++.+.+++.+.++++|..++|.+++.+...            
T Consensus         6 ~~~~~~~~-l~~~f~~g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~   84 (310)
T TIGR01272         6 SQRYYVLF-LGALFVLASGLTILQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATA   84 (310)
T ss_pred             HhhHHHHH-HHHHHHHHhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhh
Confidence            34566645 5558889999999999999999998765 599999999999999999999999987732            


Q ss_pred             ----hCcHHHHHHHHHHHHHHHHHHhh
Q psy6058         108 ----YGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus       108 ----~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                          ..|+++|++.+++.++..+.+.+
T Consensus        85 ~~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        85 NAEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                46899988776655444444333

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11462 putative transporter; Provisional

Probab=98.17  E-value=4.1e-05  Score=66.15  Aligned_cols=121  Identities=13%  Similarity=0.088  Sum_probs=81.4

Q ss_pred             cchhhhhHHHhhh----hchh-HHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHHh
Q psy6058           5 LLLGPVASSFVDK----YGCR-WMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIAY   73 (235)
Q Consensus         5 ~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~   73 (235)
                      ++..|+.|+++||    +||| +.++++....+++.+++. ..++      ...+ .+.-++..++......+..++..+
T Consensus        59 ai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf-~~p~~s~~~~~~y~-~~~~~~~~~~~t~~~ipy~al~~~  136 (460)
T PRK11462         59 AISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAY-STPDLSMNGKMIYA-AITYTLLTLLYTVVNIPYCALGGV  136 (460)
T ss_pred             HHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHH-hCCCCCcchHHHHH-HHHHHHHHHHHHHHhccHHHHHHH
Confidence            4678999999997    6876 555667777777766654 4432      2212 333555677888888888888888


Q ss_pred             hcc--cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhh-------CcHHHHHHHHHHHHHHHHH
Q psy6058          74 WFD--KKRTLATSLGACGTGIGTFVYAPLTQYWIEEY-------GWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        74 ~~~--~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-------gw~~~~~~~~~~~~~~~~~  127 (235)
                      ..+  ++|.+..++-..+..+|..+++.+...+....       ||+....+.+++.++...+
T Consensus       137 lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i  199 (460)
T PRK11462        137 ITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAF  199 (460)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            764  45999999999888888888877765554433       4666665555544444333

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=98.15  E-value=0.00029  Score=59.33  Aligned_cols=129  Identities=16%  Similarity=0.070  Sum_probs=91.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~   82 (235)
                      ++...++...+.|..+.|++++++.+...+..++.. +.++...+ -+.-+..|++.+. ..+..+++-...|+ +--++
T Consensus        54 yl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll-~~~sv~~m-q~~q~~yg~~~a~-evay~sYiys~v~~~~yq~v  130 (412)
T PF01770_consen   54 YLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLL-FGTSVLAM-QLMQFFYGLATAA-EVAYYSYIYSVVDKEHYQKV  130 (412)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-HHCcHHHH-HHHHHHHHHHHHH-HHHHHHHheeecCHHHHHHH
Confidence            345667788999999999999999999999988888 89999877 5558888887764 56666777665555 45667


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHh--hhCcHHHHHHHHHHHHHHHHHHhhccCCc
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIE--EYGWRGTILLLAGTFLQMCICGALMKDPE  135 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~--~~gw~~~~~~~~~~~~~~~~~~~~~~~~~  135 (235)
                      .+....+..+|..++..++..+..  ...+....++......+.++..+++.+++
T Consensus       131 ts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~fLP~~~  185 (412)
T PF01770_consen  131 TSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALFLPMPK  185 (412)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            777777777777777777666554  33455565555554555555544443333

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG0254|consensus

Probab=98.11  E-value=4e-05  Score=67.08  Aligned_cols=122  Identities=22%  Similarity=0.271  Sum_probs=76.7

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchH-----------HHHHHHHHHHHHhhhhhhhHhH-HHHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSI-----------EAQYITFGCIAGCGLSLAYVTA-VVSI   71 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~i~~~~l~G~~~g~~~~~~-~~~~   71 (235)
                      ..++..++.++.||+|||+.++.+...+.++.++.+ .....           ..+.++...+.-...+....+. ..+.
T Consensus       342 ~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~  420 (513)
T KOG0254|consen  342 NFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILA-VVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIV  420 (513)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHH-HHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhh
Confidence            356677778999999999999999999999988777 43111           1111121122222222223333 3577


Q ss_pred             Hhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHH
Q psy6058          72 AYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCI  126 (235)
Q Consensus        72 ~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  126 (235)
                      +|.+|.+ |+.+.++......+.+.+............++...|...+..+.+...
T Consensus       421 sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~  476 (513)
T KOG0254|consen  421 SEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLI  476 (513)
T ss_pred             hccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            8999998 999999988777777766555555555544444555555554444444

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=98.07  E-value=0.00016  Score=60.43  Aligned_cols=110  Identities=14%  Similarity=0.039  Sum_probs=78.7

Q ss_pred             chhhhhHHHhhhhc-----hhHHHH-HHHHHHHHHHHHHHHhh-----c-------hHH-H--HHHHHHHHHHhhhhhhh
Q psy6058           6 LLGPVASSFVDKYG-----CRWMTI-LGGIISGTGFVLSATVA-----N-------SIE-A--QYITFGCIAGCGLSLAY   64 (235)
Q Consensus         6 i~~~~~g~l~dr~G-----~r~~~~-~~~~~~~~~~~~~~~~~-----~-------~~~-~--l~i~~~~l~G~~~g~~~   64 (235)
                      ...+.+|+.+|+.+     ||..++ .|.++...+..+.. ++     .       +.+ .  +.....++.|+|.+...
T Consensus        29 p~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap-~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~  107 (403)
T PF03209_consen   29 PLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAP-FALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASG  107 (403)
T ss_pred             HHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHH-HHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhH
Confidence            35678999999988     775554 55555555554443 22     2       222 1  12233566788888888


Q ss_pred             HhHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHH
Q psy6058          65 VTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILL  116 (235)
Q Consensus        65 ~~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~  116 (235)
                      ++..+.+++..|+ +|+++.++..++..+|..++..+.+.+.+.+.-.....+
T Consensus       108 T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v  160 (403)
T PF03209_consen  108 TSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQV  160 (403)
T ss_pred             HHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHH
Confidence            8888999997755 699999999999999999999999999888765444433

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK11462 putative transporter; Provisional

Probab=98.05  E-value=0.00012  Score=63.36  Aligned_cols=105  Identities=13%  Similarity=-0.003  Sum_probs=64.0

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc------c
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD------K   77 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~------~   77 (235)
                      +++.+++++++||+|+|..+..+.++..+..++...... +.+.+ +..-++.|++.+...+....++++..+      .
T Consensus       277 iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~l~~~m~ad~~d~~e~~tG  355 (460)
T PRK11462        277 LIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFFVPMQASITM-FVFIFVIGVLHQLVTPIQWVMMSDTVDYGEWCNG  355 (460)
T ss_pred             HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhchhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHhcC
Confidence            567788999999999998877655544443333330222 22222 233455677666655555555555433      1


Q ss_pred             ch--hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCc
Q psy6058          78 KR--TLATSLGACGTGIGTFVYAPLTQYWIEEYGW  110 (235)
Q Consensus        78 ~r--g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw  110 (235)
                      +|  |...+......-+|.++++.+.+.+.+..|+
T Consensus       356 ~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~Gy  390 (460)
T PRK11462        356 KRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGGY  390 (460)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            23  4445666677888999998888887765444

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=98.05  E-value=7.3e-05  Score=64.06  Aligned_cols=124  Identities=19%  Similarity=0.218  Sum_probs=89.9

Q ss_pred             chhhhhHHHhhhh-----chhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc--
Q psy6058           6 LLGPVASSFVDKY-----GCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF--   75 (235)
Q Consensus         6 i~~~~~g~l~dr~-----G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~--   75 (235)
                      ..-|+.|.++|-+     .||+-++++.++..++.+..+...   .+.... .+..++..+|........-+.+.|..  
T Consensus        39 ~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~-~~~l~la~~g~a~~DV~aDa~vvE~~~~  117 (433)
T PF03092_consen   39 SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSAAIA-VVLLFLASFGYAFADVAADALVVELARR  117 (433)
T ss_pred             HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchhhhH-HHHHHHHHHHHHHHHHhhhHHHHHHhhc
Confidence            4568899999986     355666677777655555555122   233323 44456677888888888888888765  


Q ss_pred             -ccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          76 -DKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        76 -~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                       |..||...+.......+|++++..+.+.+.+..+++..|.+.+++.++..+..++
T Consensus       118 ~p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~  173 (433)
T PF03092_consen  118 EPESRGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALF  173 (433)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHH
Confidence             3348888999999999999999999999999999999998877766655554443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=98.02  E-value=0.00017  Score=59.17  Aligned_cols=124  Identities=16%  Similarity=0.087  Sum_probs=92.3

Q ss_pred             cchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc--ccchhH
Q psy6058           5 LLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF--DKKRTL   81 (235)
Q Consensus         5 ~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~--~~~rg~   81 (235)
                      ...++....+.+|. .+|+..+...+++.++.+.+. +.+....++.  .++.|+|.|..++.....+....  |++-+.
T Consensus       257 ~~~~ll~P~la~R~~n~r~~~~~~~~~~l~G~~G~~-~~P~~~~~lw--~~llG~G~G~~F~laL~li~~rs~~a~~Aa~  333 (395)
T COG2807         257 LPTALLIPLLARRSKNQRPLVVLALLLMLVGLVGLL-LAPGQLPILW--ALLLGLGQGGAFPLALTLILLRSSDAAIAAA  333 (395)
T ss_pred             HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHH-HhhhhHHHHH--HHHHhCccchHHHHHHHHHHhhcCChHHHHH
Confidence            45666777888864 577777777788888887777 5544332222  47789999999999988888654  334677


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHHHHhhc
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      ..++.+....+=.++||.+.+++-|.. +|+..++......+...++-+..
T Consensus       334 LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         334 LSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             HHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHhhc
Confidence            788888888888899999999999887 49988888777766666665443

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=98.01  E-value=8.1e-05  Score=65.66  Aligned_cols=131  Identities=18%  Similarity=0.146  Sum_probs=88.7

Q ss_pred             cchhhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhH
Q psy6058           5 LLLGPVASSFVDKYGC-RWMTILGGIISGTGFVLSATV-ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTL   81 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~-~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~   81 (235)
                      ++++.+.|.+..++++ |+.++++.+++.+++.+++.. .+|.... +.+-++.|++.|....+....+.-..|.+ .|.
T Consensus       363 ~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~~~~n~~~~-i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~  441 (599)
T PF06609_consen  363 CAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAVRPDNKNAA-IAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGT  441 (599)
T ss_pred             HHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHccCCCcchH-HHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHH
Confidence            4566777888887764 455567777776655555412 2344333 45567788888876666655554455665 999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHh-------------------------------------------------------
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIE-------------------------------------------------------  106 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~-------------------------------------------------------  106 (235)
                      +.++..+...+|+.++..+...+..                                                       
T Consensus       442 a~gL~~s~R~~GGsIg~aIy~~I~~n~~~~~l~~~v~~a~~~aglp~~sl~~li~a~~~~~~~a~~~iPGit~~i~~a~~  521 (599)
T PF06609_consen  442 ATGLTGSIRSIGGSIGYAIYNAIFTNKLPKELPKYVAPAALAAGLPESSLPALIEALAAGNLEALAAIPGITPEIIAAVV  521 (599)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHhhhhHhHHHHHHHHHHhcCCChhhHHHHHHHHhccChhHHhhCCCCCHHHHHHHH
Confidence            9999999999998888777533221                                                       


Q ss_pred             -------hhCcHHHHHHHHHHHHHHHHHHhhccCCch
Q psy6058         107 -------EYGWRGTILLLAGTFLQMCICGALMKDPEW  136 (235)
Q Consensus       107 -------~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (235)
                             ..++|++|+....+..+.++++++.++.+.
T Consensus       522 ~A~~~aYa~ay~~V~~~siaFG~vaiiaa~fl~d~~~  558 (599)
T PF06609_consen  522 AAFQEAYAHAYRYVYYSSIAFGVVAIIAALFLGDIDK  558 (599)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence                   025788888888888888888888876554

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=98.00  E-value=0.00019  Score=61.38  Aligned_cols=103  Identities=17%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc------c
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF------D   76 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~------~   76 (235)
                      +++.+++.++++|+|+|+++.++.++.+++.+++. +.+  +.+ +.++..++.++|.+...+...+.+++..      .
T Consensus       286 l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~-f~~~~~~~-l~~~~~~i~~~g~~~~~~l~wam~~d~vDyge~~T  363 (467)
T COG2211         286 LIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY-FTPAGSVV-LIVVALIIAGVGTGIANPLPWAMVADTVDYGEWKT  363 (467)
T ss_pred             HHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH-hhcCcchH-HHHHHHHHHHHHhhccccccHHHhcchhhHHHHHh
Confidence            44588999999999999999999999999998888 554  444 4355578888888888888777776543      2


Q ss_pred             c-c-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058          77 K-K-RTLATSLGACGTGIGTFVYAPLTQYWIEEYG  109 (235)
Q Consensus        77 ~-~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g  109 (235)
                      . + -|...+....+.=+|.+++..+.++.....|
T Consensus       364 G~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G  398 (467)
T COG2211         364 GVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG  398 (467)
T ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            2 2 4666777777788888888888888776544

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=97.92  E-value=7.6e-05  Score=62.62  Aligned_cols=107  Identities=21%  Similarity=0.136  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---chH------HHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc----chhHHHHHHHh
Q psy6058          22 WMTILGGIISGTGFVLSATVA---NSI------EAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK----KRTLATSLGAC   88 (235)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~---~~~------~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~----~rg~~~~~~~~   88 (235)
                      +.+++|.++..+|.++.. ++   ...      +.+ .++.++.++|.|+.-+.....+++-+++    +|.....+++.
T Consensus         2 ktI~~g~~~~~~G~~ll~-l~~~~~~~~~~~~~~~~-~~gL~lia~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~~fY~   79 (372)
T PF00854_consen    2 KTILLGSIVYLLGHVLLT-LSAIPPSLPSGIQLGLF-YIGLALIAVGTGGIKPNISPFGADQYDEDDDSRRDSFFNWFYW   79 (372)
T ss_dssp             HHHHHHHHHHHHHHHH---HHHTSSSC------CHH-HHHHHHHHHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHhH-HHHhcchhhhhHHHHHH-HHHHHHHHhccccccccHHHHHHHHhcccchhhhhhhHHHHHH
Confidence            567888999999988854 33   222      334 4446778999999999999999986633    26777888999


Q ss_pred             hHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          89 GTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        89 ~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      +.++|..+++.+.+++.+++||...|.+.++..++.++..+.
T Consensus        80 ~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~  121 (372)
T PF00854_consen   80 GINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS  121 (372)
T ss_dssp             HHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999988777666555443

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=97.87  E-value=0.00015  Score=61.93  Aligned_cols=124  Identities=19%  Similarity=0.177  Sum_probs=86.6

Q ss_pred             cchhhhhHHHhhh----hchh-HHHHHHHHHHHHHHHHHHHhhch------HHHHHHHHHHHHHhhhhhhhHhHHHHHHh
Q psy6058           5 LLLGPVASSFVDK----YGCR-WMTILGGIISGTGFVLSATVANS------IEAQYITFGCIAGCGLSLAYVTAVVSIAY   73 (235)
Q Consensus         5 ~i~~~~~g~l~dr----~G~r-~~~~~~~~~~~~~~~~~~~~~~~------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~   73 (235)
                      ++..|+.|.++||    +||+ +.++++.+..++.+.++. .+++      ....++. -++.+++......+..++..+
T Consensus        62 Ai~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F-~~p~~~~~~k~~ya~vt-Y~l~~l~YT~vniPy~al~~~  139 (467)
T COG2211          62 AITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLF-ITPDFSMTGKLIYALVT-YMLLGLGYTLVNIPYGALGPE  139 (467)
T ss_pred             HHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHH-cCCCcccCcchHHHHHH-HHHHHHHHHheeCchhhcchh
Confidence            4667899999997    5654 567778777777777666 5542      2222233 677788898888888888888


Q ss_pred             hc--ccchhHHHHHHHhhHHHHHHHHHHHHHHHHh-------hhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          74 WF--DKKRTLATSLGACGTGIGTFVYAPLTQYWIE-------EYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        74 ~~--~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~-------~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      .-  |+||.+..+.-..+..+|..+...+...+..       ..||+....+.+++.++.++.+++
T Consensus       140 iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~  205 (467)
T COG2211         140 ITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFF  205 (467)
T ss_pred             hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence            75  5569999999888888887776666555543       246777777766666555555443

>KOG0255|consensus

Probab=97.86  E-value=0.00036  Score=61.15  Aligned_cols=98  Identities=11%  Similarity=0.044  Sum_probs=75.8

Q ss_pred             hhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHH--HHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHH
Q psy6058           8 GPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEA--QYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATS   84 (235)
Q Consensus         8 ~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~--l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~   84 (235)
                      ....+.+.|++|||.....+.++..+++++.+ +......  +......+..++.+..+.....+.+|.+|.. |..+.+
T Consensus       367 ~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~  445 (521)
T KOG0255|consen  367 YFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFG-WLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVG  445 (521)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH-HhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            34557889999999999999999999999888 6543322  2233345555666667777788889999986 999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHh
Q psy6058          85 LGACGTGIGTFVYAPLTQYWIE  106 (235)
Q Consensus        85 ~~~~~~~~g~~l~~~~~~~~~~  106 (235)
                      ...+...+|++++|.+......
T Consensus       446 ~~~~~~~~~~i~ap~~~~~~~~  467 (521)
T KOG0255|consen  446 AISAAARLGSILAPLFPLLLRQ  467 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999888655443

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=97.85  E-value=6.6e-05  Score=63.29  Aligned_cols=125  Identities=13%  Similarity=-0.013  Sum_probs=61.9

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHH--HHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIIS--GTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~--~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      .++.+|+.|.++||+|.|+-++....+.  ..+.+...++.    .|.+...+++.+..|+......+..-+++.++. +
T Consensus        56 ~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er~s-r  134 (412)
T PF01306_consen   56 ALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAERVS-R  134 (412)
T ss_dssp             HHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHHHH-H
T ss_pred             HHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHH-H
Confidence            4678899999999999666554333222  22222221021    333222122223334333333344444444432 1


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      +.+.-.|-.-+...+|.+++..++|.+.+. +-...|++..+..++..++.++
T Consensus       135 ~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi~s~~~~il~lll~~  186 (412)
T PF01306_consen  135 RNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWIASAAAIILLLLLLL  186 (412)
T ss_dssp             HHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHHHHHHHHHHHHHHHH
Confidence            223333444555667777777888877753 3346666655544444444343

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG2532|consensus

Probab=97.84  E-value=4.3e-05  Score=65.82  Aligned_cols=126  Identities=12%  Similarity=0.055  Sum_probs=78.3

Q ss_pred             cccchhhhhHHHhhhhch---------hHHHHHHHHHHHHHHHHHHHhhchHHH-HHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058           3 VPLLLGPVASSFVDKYGC---------RWMTILGGIISGTGFVLSATVANSIEA-QYITFGCIAGCGLSLAYVTAVVSIA   72 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~---------r~~~~~~~~~~~~~~~~~~~~~~~~~~-l~i~~~~l~G~~~g~~~~~~~~~~~   72 (235)
                      .+.+..+++|.++||.-+         |..-.++....+++.+..+ +.++... +.++ .+..+++..+........-.
T Consensus       306 ~~~~~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~-~~~~~~~~~a~~-~l~~~~~~~g~~~~Gf~~~~  383 (466)
T KOG2532|consen  306 AMAIVKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLA-FTSDEHRLLAVI-LLTIAIGLSGFNISGFYKNH  383 (466)
T ss_pred             HHHHHHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeee-ecCCCcchHHHH-HHHHHHHHcccchhhhHhhh
Confidence            356778899999998744         3333344445555555555 4442111 1112 12222222222222222222


Q ss_pred             -hhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHh---hhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          73 -YWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIE---EYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        73 -~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~---~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                       +..|++-+..+|+.+....+.++++|.+.+.+..   ...|+.+|++.+++.++..+...+
T Consensus       384 ~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~  445 (466)
T KOG2532|consen  384 QDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLF  445 (466)
T ss_pred             hhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeE
Confidence             3377789999999999999999999999999984   347999999988877666555433

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.83  E-value=0.00063  Score=57.91  Aligned_cols=73  Identities=12%  Similarity=-0.032  Sum_probs=48.7

Q ss_pred             HHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHH
Q psy6058          50 ITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQ  123 (235)
Q Consensus        50 i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~  123 (235)
                      +...++.++|.+...+......-.-.+..+|++.+++......+..+++...+++.++ +-...|...+++..+
T Consensus       316 ~~~~~l~~~G~~~~~p~~~~~al~~~~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~  388 (413)
T PRK15403        316 VLGTSLYAFGIGLIFPTLFRFTLFSNNLPKGTVSASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGV  388 (413)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHH
Confidence            4446777888887766665433221222489999998888888888888888887665 556666655544433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.82  E-value=2.7e-05  Score=64.62  Aligned_cols=88  Identities=13%  Similarity=0.075  Sum_probs=60.2

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh-c---hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccch
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA-N---SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKR   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~-~---~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~r   79 (235)
                      ..++.+++|+++||+|+|+.+..+......+..+.. .. .   +.+.. +...++.+++.|...+.....+.+.+|+++
T Consensus       274 ~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  351 (366)
T TIGR00886       274 GSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVV-LGLVSPLSLAVF-IVLFVALFFFSGAGNGSTFALVPHIFRRAT  351 (366)
T ss_pred             HHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHH-hcCCCcchHHHH-HHHHHHHHHHhccccchhhhcchhhchhhc
Confidence            457788999999999999888777766666655544 32 2   34322 232344455555555666677778888889


Q ss_pred             hHHHHHHHhhHHHH
Q psy6058          80 TLATSLGACGTGIG   93 (235)
Q Consensus        80 g~~~~~~~~~~~~g   93 (235)
                      |.+.|+.+....+|
T Consensus       352 g~~~g~~~~~~~~g  365 (366)
T TIGR00886       352 GAVSGLVGAIGNLG  365 (366)
T ss_pred             ccHHHHHHHhccCC
Confidence            99999988776654

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=97.79  E-value=1.6e-07  Score=80.45  Aligned_cols=124  Identities=23%  Similarity=0.237  Sum_probs=79.2

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHH---HhhchH----HHHHHHHHHHHHhhhhh-hhHhHHHHHHhhc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSA---TVANSI----EAQYITFGCIAGCGLSL-AYVTAVVSIAYWF   75 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~---~~~~~~----~~l~i~~~~l~G~~~g~-~~~~~~~~~~~~~   75 (235)
                      ..++.+++.++.||+|||+.++++.++.+++.+.++   ....+.    ..+.++...+...+.+. ..+....+..|.|
T Consensus       299 ~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~Elf  378 (451)
T PF00083_consen  299 NFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVSSSSWWSILSIVFLALFFAFFSLGWGPLPWIYTAELF  378 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeeccccccccccccccccccccc
Confidence            356677777999999999999999988877776552   011211    11111212222222222 2244447789999


Q ss_pred             ccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          76 DKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        76 ~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      |.+ |+++.++......++.++++.+...+.+..+-...+.+.+++.++..+.
T Consensus       379 Pt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~  431 (451)
T PF00083_consen  379 PTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIF  431 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhh
Confidence            987 9999999988888999999888888877766233444444444444433

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=97.79  E-value=0.00089  Score=57.96  Aligned_cols=123  Identities=10%  Similarity=0.080  Sum_probs=89.5

Q ss_pred             chhhhhHHHhhhhch-hHHHHHHHHHHHHHHHHHHHhhch---------------------HHHHHHHHHHHHHhhhhhh
Q psy6058           6 LLGPVASSFVDKYGC-RWMTILGGIISGTGFVLSATVANS---------------------IEAQYITFGCIAGCGLSLA   63 (235)
Q Consensus         6 i~~~~~g~l~dr~G~-r~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~l~i~~~~l~G~~~g~~   63 (235)
                      +.+++..++.+|+|+ |.+..++.++.+++.+... +.++                     .+.. ++...+.|+..+..
T Consensus       320 i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~Gi~~A~~  397 (477)
T TIGR01301       320 ITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATV-LVTYVAKNSRYYDGDGESLPPPTGIKASA-LIVFAILGIPLAIT  397 (477)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHH-HHHhhhhccccccccccccCcchhhHHHH-HHHHHHhhHHHHHH
Confidence            455667788899985 6777888888888877766 4432                     1323 44467779999988


Q ss_pred             hHhHHHHHHhhccc---chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC--cHHHHHHHHHHHHHHHHHHhh
Q psy6058          64 YVTAVVSIAYWFDK---KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG--WRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        64 ~~~~~~~~~~~~~~---~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g--w~~~~~~~~~~~~~~~~~~~~  130 (235)
                      +..-++++++..++   +.|..+|+.+.+..+...+.....+.+.+.+|  -.+++.+.++..++..++.++
T Consensus       398 ~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~  469 (477)
T TIGR01301       398 YSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALI  469 (477)
T ss_pred             HHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHH
Confidence            88888899987663   36999999999999999998888787666554  455666666666666555443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG4686|consensus

Probab=97.69  E-value=1.2e-05  Score=63.88  Aligned_cols=102  Identities=20%  Similarity=0.258  Sum_probs=79.4

Q ss_pred             cchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHH--hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-cchh
Q psy6058           5 LLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSAT--VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD-KKRT   80 (235)
Q Consensus         5 ~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~--~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~-~~rg   80 (235)
                      .+-++++|++.|| +|-|+.-++-+++..++-++++.  ..+.+|.+ +++|++.|+|.-...+.-+.+...||. |+.+
T Consensus        93 vVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M-~~GRF~FGIGgESlAVaQN~yav~wFKGKELn  171 (459)
T KOG4686|consen   93 VVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTM-LAGRFLFGIGGESLAVAQNKYAVYWFKGKELN  171 (459)
T ss_pred             EEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHH-HhhheeeccCchhhhhhhcceeEEEecCcccc
Confidence            3567889999998 79998888888888888777761  34677766 777999999887777777788888885 4699


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058          81 LATSLGACGTGIGTFVYAPLTQYWIEE  107 (235)
Q Consensus        81 ~~~~~~~~~~~~g~~l~~~~~~~~~~~  107 (235)
                      .+.|+..+...+|+.+--.+.+++.+.
T Consensus       172 ~vfGlqlSvAR~GstvNf~lm~~ly~~  198 (459)
T KOG4686|consen  172 FVFGLQLSVARLGSTVNFLLMPFLYDT  198 (459)
T ss_pred             chhhHHHHHHHhhceeeeeecHHHHHH
Confidence            999999998899887665556665544

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=97.64  E-value=0.0029  Score=54.92  Aligned_cols=122  Identities=19%  Similarity=0.092  Sum_probs=77.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHH-HHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-ch-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGG-IISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KR-   79 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~-~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~r-   79 (235)
                      ..++..|+.|-++|+-|+|+.++... .+..++++++....++.+.+..++-++..++.+...+...+++.+..++ ++ 
T Consensus        82 ~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~  161 (477)
T PF11700_consen   82 LQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRV  161 (477)
T ss_pred             HHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhh
Confidence            45678899999999988776655544 4555566666612344443434434555567777777788888887654 36 


Q ss_pred             -------------------------hHHHHHHHhhHHHHHHHHHHHHHHHHhh--------hCcHHHHHHHHHHHHHH
Q psy6058          80 -------------------------TLATSLGACGTGIGTFVYAPLTQYWIEE--------YGWRGTILLLAGTFLQM  124 (235)
Q Consensus        80 -------------------------g~~~~~~~~~~~~g~~l~~~~~~~~~~~--------~gw~~~~~~~~~~~~~~  124 (235)
                                               ++..+.-.....+|+.+.-.+.-.+...        .+.|.++.+.++.-++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vf  239 (477)
T PF11700_consen  162 RAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVF  239 (477)
T ss_pred             hhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHH
Confidence                                     8888888877888887766654444322        22466666666644333

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK09848 glucuronide transporter; Provisional

Probab=97.55  E-value=0.001  Score=57.15  Aligned_cols=98  Identities=13%  Similarity=-0.048  Sum_probs=55.6

Q ss_pred             ccchhhhhHHHhhhh----chhHHH-HHHHHHHHHHHHH-HHHhh----chH-HHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058           4 PLLLGPVASSFVDKY----GCRWMT-ILGGIISGTGFVL-SATVA----NSI-EAQYITFGCIAGCGLSLAYVTAVVSIA   72 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~----G~r~~~-~~~~~~~~~~~~~-~~~~~----~~~-~~l~i~~~~l~G~~~g~~~~~~~~~~~   72 (235)
                      .++..++.|+++||.    |||+.. +++.+...+..++ +. ..    .+. ...+....++.+++.+...++..++..
T Consensus        57 ~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  135 (448)
T PRK09848         57 DAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFW-VPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLAT  135 (448)
T ss_pred             HHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHh-CcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhh
Confidence            467899999999996    666644 5555544444333 32 22    111 111122245667778777777777666


Q ss_pred             hhc--ccchhHHHHHHHhhHH-----HHHHHHHHHHH
Q psy6058          73 YWF--DKKRTLATSLGACGTG-----IGTFVYAPLTQ  102 (235)
Q Consensus        73 ~~~--~~~rg~~~~~~~~~~~-----~g~~l~~~~~~  102 (235)
                      +..  +++|.+..++-..+..     ++..++|.+.+
T Consensus       136 ~~~~~~~~r~~~~~~r~~~~~~~~~~~~~~~~p~i~~  172 (448)
T PRK09848        136 AMTQQPQSRARLGAARGIAASLTFVCLAFLIGPSIKN  172 (448)
T ss_pred             hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            543  3458877666544333     44445555544

>KOG2563|consensus

Probab=97.55  E-value=0.00049  Score=58.09  Aligned_cols=104  Identities=25%  Similarity=0.310  Sum_probs=71.9

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchH-----HH--HHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSI-----EA--QYITFGCIAGCGLSLAYVTAVVSIAYWF   75 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~-----~~--l~i~~~~l~G~~~g~~~~~~~~~~~~~~   75 (235)
                      ++....+.+-|+.||+|-|..++++..+.+++..+-. .+...     ..  +...+..+.+.+.-.....-.-..+-||
T Consensus        91 v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~-iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~WF  169 (480)
T KOG2563|consen   91 VSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRL-ISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAVWF  169 (480)
T ss_pred             HHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhh-hccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHhhC
Confidence            4455667778999999999999999999999998877 55222     11  2233344444444333222234455688


Q ss_pred             cc-chhHHHHHHHhhHHHHHHHHHHHHHHHHhh
Q psy6058          76 DK-KRTLATSLGACGTGIGTFVYAPLTQYWIEE  107 (235)
Q Consensus        76 ~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~  107 (235)
                      +. +|..+..+-.++..+|.+++-.+...+..+
T Consensus       170 ~~~qra~A~~~~v~~n~LGvavg~llppilV~~  202 (480)
T KOG2563|consen  170 PPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS  202 (480)
T ss_pred             CcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence            65 699999998888888888887777776654

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=97.54  E-value=0.0042  Score=52.07  Aligned_cols=121  Identities=17%  Similarity=0.065  Sum_probs=87.4

Q ss_pred             ccchhhhhHHHhh-hhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc-cc
Q psy6058           4 PLLLGPVASSFVD-KYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD-KK   78 (235)
Q Consensus         4 ~~i~~~~~g~l~d-r~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~-~~   78 (235)
                      ..++..+.|++.. |.++++...+|+....++..+.. .+   .+.+.+ ...-++.|++.|.......+.+.+... .+
T Consensus       257 ~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii-~a~~~~~~~~~-~~~~~l~G~g~G~f~vgals~mM~lt~~~~  334 (403)
T PF03209_consen  257 TLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALII-LAGPLGSPWLF-RPGVFLLGLGNGLFTVGALSLMMDLTSAGR  334 (403)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH-HHHhcccchHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCCcc
Confidence            4566677777666 67888888888888887776654 33   455544 565788999999988888888878764 46


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhh----------hCcHHHHHHHHHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEE----------YGWRGTILLLAGTFLQMCI  126 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~----------~gw~~~~~~~~~~~~~~~~  126 (235)
                      .|..+|.+...+.++..++..+++.+.|-          .+|..+|.+.++..+...+
T Consensus       335 aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~  392 (403)
T PF03209_consen  335 AGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALV  392 (403)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHH
Confidence            99999999999998888888888877653          2455566555554443333

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=97.53  E-value=0.0028  Score=53.76  Aligned_cols=70  Identities=13%  Similarity=0.161  Sum_probs=47.2

Q ss_pred             ccchhhhhHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058           4 PLLLGPVASSFVDKYG-CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF   75 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G-~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~   75 (235)
                      ..++++++|.++||.+ +|+.+.+..++..+..+... ..++++.++.. .++..+......+...++..+..
T Consensus        50 ~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~-~~~~f~~~~~~-~~l~~~~~~p~~pl~dsi~~~~~  120 (400)
T PF03825_consen   50 RIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLA-FSSSFWWLFVI-MLLFSFFFSPTMPLSDSIALSYL  120 (400)
T ss_pred             HHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHH-HhccHHHHHHH-HHHHHHHHccHHHHHHHHHHHHc
Confidence            4678899999999986 56667676677666666666 67777755443 55566666555555555555543

>PTZ00207 hypothetical protein; Provisional

Probab=97.45  E-value=0.0031  Score=55.98  Aligned_cols=124  Identities=12%  Similarity=0.012  Sum_probs=83.5

Q ss_pred             cchhhhhHHHh---hhhc-----hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc
Q psy6058           5 LLLGPVASSFV---DKYG-----CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD   76 (235)
Q Consensus         5 ~i~~~~~g~l~---dr~G-----~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~   76 (235)
                      ++|-+..|.+.   .|.+     +|...+....++.++.+++. +.-....+++. -++.|++.|..++.....++|.|.
T Consensus       405 ~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~-~~~p~~~L~~~-~~lvg~~~G~~~~~~~~i~selFg  482 (591)
T PTZ00207        405 AVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLF-LTLPKAALPLP-YFIAAFANGFMAATIALVTRTIFA  482 (591)
T ss_pred             HhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHH-HHCCccHhHHH-HHHHHHHhhHhHHHHHHHHHHHhc
Confidence            45555666655   1221     22333333333666666665 44221335444 788899999999999999999999


Q ss_pred             cchhHHHHHHHhhHHHHHHHH-HHHHHHHHhhh----------C---cHHHHHHHHHHHHHHHHHHhh
Q psy6058          77 KKRTLATSLGACGTGIGTFVY-APLTQYWIEEY----------G---WRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        77 ~~rg~~~~~~~~~~~~g~~l~-~~~~~~~~~~~----------g---w~~~~~~~~~~~~~~~~~~~~  130 (235)
                      |+-|+-..+..+...+|+.+. ..+.+.+.|+-          |   ++..|++.+++++...+....
T Consensus       483 k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s~~  550 (591)
T PTZ00207        483 KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITSTY  550 (591)
T ss_pred             cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHHhh
Confidence            779999888888888998877 55667666542          2   678888888777776666443

>KOG2533|consensus

Probab=97.42  E-value=0.0013  Score=57.06  Aligned_cols=115  Identities=17%  Similarity=0.106  Sum_probs=65.0

Q ss_pred             cccchhhhhHHHhhh----hchhHHHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           3 VPLLLGPVASSFVDK----YGCRWMTILGGIISGTGF-VLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr----~G~r~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      +.+++.+++|+++||    ..+|.......++..+.. +... ...+....... .+....+.....+......+.....
T Consensus       321 ~g~v~~i~ag~lsdr~~~~~~~~~~~~~~~~~~~~~g~~~l~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~w~s~~~~g  398 (495)
T KOG2533|consen  321 GGIVGLILAGYLSDRLKTIFARRLLFIVFLCLYAIIGAISLL-AAAVLPGAYGA-FLIGPYGLIATAIIALSWTSANLAG  398 (495)
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-hhccchHHhHH-HHhcchhhHHHHHHHHhhccccccc
Confidence            457899999999999    677777666665544444 4333 33323322111 2222334444445555566654433


Q ss_pred             c--hhHHHHHHHhhHHHHHHHHHHH-HHHHHhhhCcHHHHHHHHH
Q psy6058          78 K--RTLATSLGACGTGIGTFVYAPL-TQYWIEEYGWRGTILLLAG  119 (235)
Q Consensus        78 ~--rg~~~~~~~~~~~~g~~l~~~~-~~~~~~~~gw~~~~~~~~~  119 (235)
                      +  |-...+....+.+.++++.|.+ .+....+++|...|+....
T Consensus       399 ~~k~~~~~~~~i~~~~s~~~~~~~~~~~~~ap~y~~~~~f~~~~~  443 (495)
T KOG2533|consen  399 NTKALTTVSAIIDGTGSAGAISGQLFRSLDAPRYGWGAVFYMLVA  443 (495)
T ss_pred             hHHhHHHHhhhhcchhHHHHhhhhhcccccCcchhhhhHHHHHHH
Confidence            2  4455555666666665555444 4445566788888855443

>PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs)

Probab=97.42  E-value=2.6e-05  Score=68.42  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=2.9

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc----h-----------------------------------
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN----S-----------------------------------   44 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~----~-----------------------------------   44 (235)
                      .++..++..++.+|..|-+.+-+|.++++++.++++ +.+    .                                   
T Consensus        51 ~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~-lPhf~~~~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~  129 (539)
T PF03137_consen   51 SLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFA-LPHFLSGPYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDC  129 (539)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHh-ccHhhcCCCccccccccccccccccccccccccccccCccccc
Confidence            356667777888888788888899999999988776 420    0                                   


Q ss_pred             ----------HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058          45 ----------IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWI  105 (235)
Q Consensus        45 ----------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~  105 (235)
                                +..+++++.++.|+|....++...+|+.|..++ +-+...|++..+..+|.++|-.+++.+.
T Consensus       130 ~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L  201 (539)
T PF03137_consen  130 CSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYIGILYAMSILGPALGFLLGSFCL  201 (539)
T ss_dssp             ----------------------SSS-----------------------------------------------
T ss_pred             cccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccchhhhhHHhhccHHHHHHHHHHHH
Confidence                      112445668999999999999999999998755 4888899999999999888888877665

Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P.

>KOG3626|consensus

Probab=97.35  E-value=0.0013  Score=59.08  Aligned_cols=101  Identities=17%  Similarity=0.106  Sum_probs=80.0

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhc-------------------h---------------------
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVAN-------------------S---------------------   44 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~-------------------~---------------------   44 (235)
                      .+...+..++.-|..|-+.+-+|.++++++.++++ +.+                   .                     
T Consensus       146 ~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~a-lPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  224 (735)
T KOG3626|consen  146 LLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFA-LPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPE  224 (735)
T ss_pred             hhhhHhHHHhccccCccceeeechhHHHHHHHHHh-ChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCC
Confidence            45566777888888888888899999988888776 420                   0                     


Q ss_pred             -----------HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHHh
Q psy6058          45 -----------IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIE  106 (235)
Q Consensus        45 -----------~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~~  106 (235)
                                 .+.+++...++.|+|....++...+|+-+...+ +-....|+..++..+|.++|-++++++..
T Consensus       225 ~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~  298 (735)
T KOG3626|consen  225 NSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLK  298 (735)
T ss_pred             cccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence                       233455668889999999999999999998755 58888999999999999999888888754

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=97.27  E-value=0.0093  Score=50.32  Aligned_cols=115  Identities=20%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             chhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHH
Q psy6058           6 LLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSL   85 (235)
Q Consensus         6 i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~   85 (235)
                      +.-+++.++.+|+.-+.-+.+..++..++.++.+ ++++.+.- +++-++.+++.|........+.+ .+++   ...+-
T Consensus        74 ~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va-~~~~v~~~-l~Gv~las~ssg~GE~tfL~lt~-~y~~---~~l~~  147 (402)
T PF02487_consen   74 LVKLIAPFFIHRVPYWIRILICVALSAAGMLLVA-FSPSVWVR-LLGVVLASLSSGLGEVTFLSLTH-FYGK---SSLSA  147 (402)
T ss_pred             HHHHHhHhhhhhccchHHHHHHHHHHHHHHhhee-eccchhHH-HHHHHHHhhhhhhhHHHHHHHHH-hcCc---ccccc
Confidence            3445677788887655555667778888888888 88888744 55567778888877776666544 4554   34566


Q ss_pred             HHhhHHHHHHHHHHHHHHHHhhhCc--HHHHHHHHHHHHHHHHH
Q psy6058          86 GACGTGIGTFVYAPLTQYWIEEYGW--RGTILLLAGTFLQMCIC  127 (235)
Q Consensus        86 ~~~~~~~g~~l~~~~~~~~~~~~gw--~~~~~~~~~~~~~~~~~  127 (235)
                      +.++.+.++.+|+..-..+.+ .|+  |..+.+...+.++..+.
T Consensus       148 wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~  190 (402)
T PF02487_consen  148 WSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLS  190 (402)
T ss_pred             ccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHH
Confidence            777777788888777655555 555  55666655554434333

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=96.98  E-value=0.023  Score=49.55  Aligned_cols=97  Identities=15%  Similarity=0.117  Sum_probs=66.3

Q ss_pred             chhhhhHHHhhhhch--h----H-HHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhhhhhHhHHH
Q psy6058           6 LLGPVASSFVDKYGC--R----W-MTILGGIISGTGFVLSATVA---------NSIEAQYITFGCIAGCGLSLAYVTAVV   69 (235)
Q Consensus         6 i~~~~~g~l~dr~G~--r----~-~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~l~G~~~g~~~~~~~~   69 (235)
                      +.+|+.+++-.|.++  |    + =+.+|.++.+++.+++. ++         .+.+++ +..-++.++|+-...|...+
T Consensus       323 ~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~-~~~~~~~~~~~~s~~wl-~~~~~~~t~gEl~~sPvgls  400 (493)
T PRK15462        323 LCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILT-LSARWSAMYGHSSLPLM-VLGLAVMGFAELFIDPVAMS  400 (493)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHhhcCCCCCcCHHHH-HHHHHHHHHHHHHHChHHHH
Confidence            445666666555522  1    1 15677777777776664 32         134444 55578889999999999999


Q ss_pred             HHHhhcccc-hhHHHHHHHhh-HHHHHHHHHHHHHHH
Q psy6058          70 SIAYWFDKK-RTLATSLGACG-TGIGTFVYAPLTQYW  104 (235)
Q Consensus        70 ~~~~~~~~~-rg~~~~~~~~~-~~~g~~l~~~~~~~~  104 (235)
                      .+++..|++ +|..+|++... ..+|..++..+++..
T Consensus       401 ~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~  437 (493)
T PRK15462        401 QITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT  437 (493)
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999987 99999998663 356766666665554

>PRK03612 spermidine synthase; Provisional

Probab=96.97  E-value=0.029  Score=49.31  Aligned_cols=65  Identities=11%  Similarity=0.028  Sum_probs=39.1

Q ss_pred             HHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHHHHHHH-hhhCcHHHHHHH
Q psy6058          53 GCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPLTQYWI-EEYGWRGTILLL  117 (235)
Q Consensus        53 ~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~-~~~gw~~~~~~~  117 (235)
                      .++.++..|+..|....+..+...++-|...|-.+....+|+++|..+.+++. ..+|-....++.
T Consensus       117 ~~~~~~l~G~~~Pl~~~~~~~~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~  182 (521)
T PRK03612        117 VLLIGLLIGMEIPLLMRILQRIRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALT  182 (521)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence            44557777777666665555433323456667777777778888877766654 355644443333

>KOG3098|consensus

Probab=96.95  E-value=0.0027  Score=54.39  Aligned_cols=97  Identities=12%  Similarity=-0.009  Sum_probs=78.3

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      +.+++++++.+.|+.|+|+.+.++......-.+.+. ..+++. + .....+.|+|.+..+.....++++..+++ +.+.
T Consensus        63 ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl-~~N~y~-~-yfssallG~Gaallw~GqG~ylt~~st~~tie~N  139 (461)
T KOG3098|consen   63 FTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFL-FPNSYY-L-YFSSALLGFGAALLWTGQGGYLTSNSTRETIERN  139 (461)
T ss_pred             HHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHH-hcchHH-H-HHHHHHhhhhHHheecccceehhhcCChhhHHHH
Confidence            467889999999999999999999999888888776 556554 4 44478889999999999999999988765 8888


Q ss_pred             HHHHHhhHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQY  103 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~  103 (235)
                      .++.......+.++|..+...
T Consensus       140 isi~Wai~~~~li~Ggi~l~~  160 (461)
T KOG3098|consen  140 ISIFWAIGQSSLIIGGIILFI  160 (461)
T ss_pred             HHHHHHHHHHHHHhhhHhhee
Confidence            888777777777766555433

>KOG4332|consensus

Probab=96.42  E-value=0.0081  Score=47.82  Aligned_cols=68  Identities=18%  Similarity=0.153  Sum_probs=51.3

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHH-HHHhhc
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVV-SIAYWF   75 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~-~~~~~~   75 (235)
                      ++...+.|.++||-|||+.-+.-++...++|+.-  .++++-.+ .++|++.|++.+..+...-+ +++|.-
T Consensus        86 mLFGtivgSLaDkqGRKracvtycitYiLsCiTK--hSpqYkVL-mVGR~LGGiaTsLLFSaFEsWliaEHn  154 (454)
T KOG4332|consen   86 MLFGTIVGSLADKQGRKRACVTYCITYILSCITK--HSPQYKVL-MVGRVLGGIATSLLFSAFESWLIAEHN  154 (454)
T ss_pred             HHHHHHHHHHHhhhccccceeeehHHHHHHHHhh--cCCceEEE-eehhhhhhHHHHHHHHHHHHHHHHHhh
Confidence            4556778899999999998777777777776655  46777655 66699999999988888776 455544

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=96.36  E-value=0.032  Score=47.08  Aligned_cols=93  Identities=17%  Similarity=0.089  Sum_probs=64.4

Q ss_pred             ccchhhhhHHHhhhhchhHHHH-HHHHHHHHHHHHHHHhhch--HHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTI-LGGIISGTGFVLSATVANS--IEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~-~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      .++.+|+.|.++|..|+|+..+ +...+..++.++.. +.++  ++.+.++..++..++.....+...+++.+..+++ -
T Consensus        71 ia~LapiLG~iaD~~g~Rk~~~~~f~~i~i~~~~~L~-~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~~~~k~~~  149 (438)
T COG2270          71 IALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLW-FIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPRLTTKDNM  149 (438)
T ss_pred             HHHHHHHhhhhhccCCCcchHHHHHHHHHHHHHHHHH-HhCCCchHHHHHHHHHHHHHhcchhheehhhHhhhhcCcccc
Confidence            3567899999999999776555 44455555666666 5544  6555455567777888888888889999988774 6


Q ss_pred             hHHHHHHHhhHHHHHHHH
Q psy6058          80 TLATSLGACGTGIGTFVY   97 (235)
Q Consensus        80 g~~~~~~~~~~~~g~~l~   97 (235)
                      ++..++-.....+|+.+.
T Consensus       150 ~riS~lg~~~gylgs~i~  167 (438)
T COG2270         150 GRISGLGWALGYLGSVIL  167 (438)
T ss_pred             CcccccccccccccchHH
Confidence            777777555556665543

>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1

Probab=96.25  E-value=0.33  Score=41.68  Aligned_cols=124  Identities=10%  Similarity=0.052  Sum_probs=68.9

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHH----HHHHHHHHH-hh--ch----HHHH--HHHHHHHHHhhhhhhhHhHHHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIIS----GTGFVLSAT-VA--NS----IEAQ--YITFGCIAGCGLSLAYVTAVVS   70 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~----~~~~~~~~~-~~--~~----~~~l--~i~~~~l~G~~~g~~~~~~~~~   70 (235)
                      .++.++..|.+.||..|.+++..+.++.    ++++.+... +.  ..    .+..  +.+.-++.|.-.-.........
T Consensus        51 ~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~Las~~~~ia  130 (432)
T PF06963_consen   51 AILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIERLASIANTIA  130 (432)
T ss_pred             HHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHHhhhhhe
Confidence            4577889999999999988876665433    333322220 11  10    1111  1111222232222222222222


Q ss_pred             HH-hhcc-------cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          71 IA-YWFD-------KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        71 ~~-~~~~-------~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      +. ||..       ..+.+.++...-.=.+...++|.+.+.+.+..+.+....+.++..++..+.
T Consensus       131 vERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~v  195 (432)
T PF06963_consen  131 VERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFV  195 (432)
T ss_pred             eccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHH
Confidence            32 4531       124455555544445688999999999999888888777777766665555

It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=96.21  E-value=0.27  Score=42.75  Aligned_cols=97  Identities=10%  Similarity=-0.092  Sum_probs=65.4

Q ss_pred             hhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----ch---------------------------HHHHHHHHHHH
Q psy6058           7 LGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NS---------------------------IEAQYITFGCI   55 (235)
Q Consensus         7 ~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~---------------------------~~~l~i~~~~l   55 (235)
                      ..++.+++++|++|++.+.+....+....++++ +.    ++                           .| .+.+.-+.
T Consensus        60 ~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~-~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W-~~~~FYv~  137 (472)
T TIGR00769        60 FMLIYTKLSNILSKEALFYTVISPFLGFFALFA-FVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIW-SFALFYVM  137 (472)
T ss_pred             HHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHH-HHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhh-hHHHHHHH
Confidence            378899999999999988777766666666555 32    11                           11 11121222


Q ss_pred             HHhhhhhhhH-hHHHHHHhhccc-chhHHHHHHHhhHHHHHHHHHHHHHHHH
Q psy6058          56 AGCGLSLAYV-TAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWI  105 (235)
Q Consensus        56 ~G~~~g~~~~-~~~~~~~~~~~~-~rg~~~~~~~~~~~~g~~l~~~~~~~~~  105 (235)
                      .-+-...... .....++|.+.. |-.+-.++...+.++|..+++.+..++.
T Consensus       138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~  189 (472)
T TIGR00769       138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS  189 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2333333444 455778887755 5778899999999999999999988876

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.01  E-value=0.13  Score=44.47  Aligned_cols=122  Identities=12%  Similarity=0.090  Sum_probs=78.8

Q ss_pred             cchhhhhHHHhhhhchh-------HHHHHHHHHHHHHHHHHHHhh----------chHHHHHHHHHHHHHhhhhhhhHhH
Q psy6058           5 LLLGPVASSFVDKYGCR-------WMTILGGIISGTGFVLSATVA----------NSIEAQYITFGCIAGCGLSLAYVTA   67 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r-------~~~~~~~~~~~~~~~~~~~~~----------~~~~~l~i~~~~l~G~~~g~~~~~~   67 (235)
                      ++.+|+..++.-+.+++       .-+-+|..+++.+.+++. ..          .+.+++ +..-+++++|+=+..+..
T Consensus       338 ii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~-~~~~~~~~~~~~~s~~~l-il~y~l~s~gEL~iSpvG  415 (498)
T COG3104         338 ILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILL-LAGIWFGGPSGLVSVWWL-VLSYVLQSFGELFISPVG  415 (498)
T ss_pred             HHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHH-HHHHhhcCCCCCcCHHHH-HHHHHHHHHHHHHhCHHH
Confidence            35566666666664433       224455556666655554 32          234434 555788899998888999


Q ss_pred             HHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHH------HHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          68 VVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQY------WIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        68 ~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~------~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      .+++++..|+. .+..++++......|..++..+++.      ..+...-...|+..+...++..+..
T Consensus       416 Ls~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~  483 (498)
T COG3104         416 LSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILL  483 (498)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence            99999998887 8899999888888888877777663      2233344556666665554444443

>KOG1237|consensus

Probab=95.93  E-value=0.046  Score=48.58  Aligned_cols=124  Identities=14%  Similarity=0.072  Sum_probs=86.4

Q ss_pred             ccchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhchH----------------------HH--HHHHHHHHHHh
Q psy6058           4 PLLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVANSI----------------------EA--QYITFGCIAGC   58 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~--l~i~~~~l~G~   58 (235)
                      ....++++++++|-| ||-+.+.++.++..++.++.. .+...                      .+  ++....-+..+
T Consensus        86 ~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt-~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~  164 (571)
T KOG1237|consen   86 QFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLT-LSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIAL  164 (571)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHhee
Confidence            345678899999985 888999999998888865554 32111                      11  11222344466


Q ss_pred             hhhhhhHhHHHHHHhhcc----cc-h--hHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHH
Q psy6058          59 GLSLAYVTAVVSIAYWFD----KK-R--TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        59 ~~g~~~~~~~~~~~~~~~----~~-r--g~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~  128 (235)
                      |.|+.-+.....-++-++    ++ +  ..-..++.....+|..++..+..++.++.||...|.+..+..++.++++
T Consensus       165 G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF  241 (571)
T KOG1237|consen  165 GAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIF  241 (571)
T ss_pred             ccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHH
Confidence            788877888888887665    22 2  3566778888899999998888888889999999988776555544443

>KOG0637|consensus

Probab=95.78  E-value=0.024  Score=48.33  Aligned_cols=100  Identities=19%  Similarity=0.186  Sum_probs=68.1

Q ss_pred             ccchhhhhHHHhhh----hchhHH-HHHHHHHHHHHHHHHHHhhchHHH----------------HHHHHHHHHHhhhhh
Q psy6058           4 PLLLGPVASSFVDK----YGCRWM-TILGGIISGTGFVLSATVANSIEA----------------QYITFGCIAGCGLSL   62 (235)
Q Consensus         4 ~~i~~~~~g~l~dr----~G~r~~-~~~~~~~~~~~~~~~~~~~~~~~~----------------l~i~~~~l~G~~~g~   62 (235)
                      ..+.+|+.|..+||    +|||+. +..+.+...++.++.. ++.++..                ++++..-+.=++...
T Consensus        80 G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig-~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~  158 (498)
T KOG0637|consen   80 GLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIG-YAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNT  158 (498)
T ss_pred             cceecccccccccccccccccccchHHHhhHHHHHHHhhhh-hHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhh
Confidence            46778999999997    687765 4566677777777776 6544321                222223333455656


Q ss_pred             hhHhHHHHHHhhcc-cchhH-HHHHHHhhHHHHHHHHHHHHHHH
Q psy6058          63 AYVTAVVSIAYWFD-KKRTL-ATSLGACGTGIGTFVYAPLTQYW  104 (235)
Q Consensus        63 ~~~~~~~~~~~~~~-~~rg~-~~~~~~~~~~~g~~l~~~~~~~~  104 (235)
                      ...++=+++.+... .++.+ +++.+..+.++|+.+|..++++.
T Consensus       159 ~qgp~ra~L~Dl~~~d~~~~~Ans~f~~f~avGnvLGY~~g~y~  202 (498)
T KOG0637|consen  159 LQGPCRALLADLARGDAKKTRANSVFSFFMAVGNVLGYALGSYL  202 (498)
T ss_pred             hhhhHHHHHHHhccChhhhhccchhHHHHHHhcceeeeeccccc
Confidence            77777788888763 33433 99999999999999988776643

>KOG2816|consensus

Probab=95.73  E-value=0.083  Score=45.75  Aligned_cols=99  Identities=10%  Similarity=0.057  Sum_probs=77.6

Q ss_pred             cchhhhhH-HHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhHH
Q psy6058           5 LLLGPVAS-SFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTLA   82 (235)
Q Consensus         5 ~i~~~~~g-~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~   82 (235)
                      .+++.+.. .+...+|-|+.+..|.+.-.++.++.+ ++++.|+++.. .++.+ ..+...+..-+.++.+. ++++|++
T Consensus       291 ~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~a-f~~~~w~~~~~-~v~~~-~~~~~~pa~~s~~s~~v~~~e~g~v  367 (463)
T KOG2816|consen  291 IISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFA-FATETWMMFAA-GVVVA-LAGIVFPAIRAFASILVSPEEQGKV  367 (463)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHH-HhccchhhhHH-HHHHH-hhcchhHHHHhHHHhhcccccccch
Confidence            34455555 677778999999999999999999999 99999977555 44433 35566677777888765 5569999


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHh
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIE  106 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~  106 (235)
                      .++......+...++|.+-+.+..
T Consensus       368 ~~~is~i~~l~~~~~~~~~~~i~~  391 (463)
T KOG2816|consen  368 FGIISGIEGLSGVVSPALYGNIFA  391 (463)
T ss_pred             hhHHHHHHHHhhhhhHHHHHHHHH
Confidence            999999999999999998777643

>KOG2615|consensus

Probab=95.70  E-value=0.053  Score=45.33  Aligned_cols=97  Identities=6%  Similarity=0.058  Sum_probs=70.0

Q ss_pred             hhhhHHHhhhhc--hhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhHHHH
Q psy6058           8 GPVASSFVDKYG--CRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTLATS   84 (235)
Q Consensus         8 ~~~~g~l~dr~G--~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~~~~   84 (235)
                      +....+..+|..  -+-.+..+..++.-..++.+ .++....+++. ..+..+..+...+.....+....|. +||.++|
T Consensus       314 ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls-~~~~~~~l~~~-s~l~sf~~A~~vt~Lt~Lv~~~~~~~qrG~~~G  391 (451)
T KOG2615|consen  314 QLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLS-LARTPVVLYLG-STLKSFSTASVVTCLTSLVHKYGPQSQRGTLNG  391 (451)
T ss_pred             HHhccccccccccchhhHHHHHHHHHHHHHHHHh-ccccchhhhHH-HHHHHHHHHHhhHHHHHHHHhcCCcccchHHHH
Confidence            333444455554  55566666667666667777 66666555444 5666777777767777788888766 5999999


Q ss_pred             HHHhhHHHHHHHHHHHHHHHHh
Q psy6058          85 LGACGTGIGTFVYAPLTQYWIE  106 (235)
Q Consensus        85 ~~~~~~~~g~~l~~~~~~~~~~  106 (235)
                      +..+...++-++||.++|.+..
T Consensus       392 i~~Sl~alaRaiGPlv~g~i~~  413 (451)
T KOG2615|consen  392 IFRSLGALARAIGPLVSGVIFS  413 (451)
T ss_pred             HHHHHHHHHHHhhhhhhheeEE
Confidence            9999999999999999988764

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=95.58  E-value=0.1  Score=44.88  Aligned_cols=104  Identities=14%  Similarity=0.122  Sum_probs=69.7

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF   75 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~   75 (235)
                      +++..+..++.-+..-|+++.+..++.++..+...++.         ++.+ +.+.--++..+..+..+.+....+++..
T Consensus       269 l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~~-f~lgd~~l~~~~~~i~~mP~lvl~a~lc  347 (433)
T PF03092_consen  269 LLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQW-FALGDTILEEVIGMIAFMPSLVLAARLC  347 (433)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCeE-EEEEhHHHHHHHHHHHHHHHHHHHHHHC
Confidence            34444454555555667777766666655544322111         1111 2223345566667777788888999999


Q ss_pred             ccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC
Q psy6058          76 DKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYG  109 (235)
Q Consensus        76 ~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g  109 (235)
                      |+. -|+..++..+..++|..++..++..+.+.++
T Consensus       348 P~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~  382 (433)
T PF03092_consen  348 PKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG  382 (433)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            886 9999999999999999999999988887665

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2563|consensus

Probab=95.44  E-value=0.023  Score=48.30  Aligned_cols=128  Identities=13%  Similarity=-0.009  Sum_probs=77.2

Q ss_pred             cccchhhhhHHHhhhhc-hhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhhhhHhHHHHHHh-hccc
Q psy6058           3 VPLLLGPVASSFVDKYG-CRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSLAYVTAVVSIAY-WFDK   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G-~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~-~~~~   77 (235)
                      +.++++.++|.+.||.+ -|..+++......++.+......   ...+.++.. ..+.|.+....+|...-...| .+|.
T Consensus       313 ~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~~~~~viv~~t-~~~~g~~~~~~~Pig~ElgvE~TyPv  391 (480)
T KOG2563|consen  313 AGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLFLGDSVIVFTT-CGLLGFFGTGYLPIGFELGVETTYPV  391 (480)
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCCceEehhhh-HHHHHHhhcCCCCcceeeeeeecccc
Confidence            45789999999999976 44555555555555532222011   112223333 455677777777766666666 5788


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC----cHHHHHHHHHHHHHHHHHHhhc
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG----WRGTILLLAGTFLQMCICGALM  131 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g----w~~~~~~~~~~~~~~~~~~~~~  131 (235)
                      .-+...|+.+....+-+.+...+.+...+..+    |...-+..+..+++..++..+.
T Consensus       392 ~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~  449 (480)
T KOG2563|consen  392 AEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFF  449 (480)
T ss_pred             CCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhh
Confidence            77777888777777777777788888877665    4333344444444444444443

>KOG3098|consensus

Probab=95.35  E-value=0.3  Score=42.17  Aligned_cols=93  Identities=23%  Similarity=0.227  Sum_probs=66.7

Q ss_pred             chhhhhHHHhhh---hchhHHHHHHHHHHHHHHHHHHHhh-c-----------------hHHHHHHHHHHHHHhhhhhhh
Q psy6058           6 LLGPVASSFVDK---YGCRWMTILGGIISGTGFVLSATVA-N-----------------SIEAQYITFGCIAGCGLSLAY   64 (235)
Q Consensus         6 i~~~~~g~l~dr---~G~r~~~~~~~~~~~~~~~~~~~~~-~-----------------~~~~l~i~~~~l~G~~~g~~~   64 (235)
                      ++....+.+.+|   +|+++.+.++..+..+++++.. .. +                 ++... .+..++.|++-+...
T Consensus       294 ~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~-l~~p~dap~~~t~~~~~~~~~~~~~~-~ii~~l~G~~D~~~~  371 (461)
T KOG3098|consen  294 IGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIH-LSFPNDAPLRPTDSPPLLFTPSYYLA-LIIGFLLGFGDACFN  371 (461)
T ss_pred             HHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHh-ccccccCCCCCCcccccccccchhHH-HHHHHHHhhHHHHHH
Confidence            345556666654   7999999999998888887765 33 1                 22222 344788899888888


Q ss_pred             HhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHHHH
Q psy6058          65 VTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYAPL  100 (235)
Q Consensus        65 ~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~~~  100 (235)
                      .....++....|++|..+.++.-.-..++..++-..
T Consensus       372 t~~~~ii~~~~~~~~~~~fsi~kfyq~~~s~v~~f~  407 (461)
T KOG3098|consen  372 TQRYVIIALLYPDDRAQAFSLFKFYQSVASCVAFFF  407 (461)
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence            888889998888888888888777777776654333

>PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age

Probab=94.37  E-value=0.6  Score=39.63  Aligned_cols=63  Identities=14%  Similarity=0.089  Sum_probs=48.2

Q ss_pred             hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhHHHHHHHhhHHHHHHHHHHHHHHH
Q psy6058          41 VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTLATSLGACGTGIGTFVYAPLTQYW  104 (235)
Q Consensus        41 ~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~l~~~~~~~~  104 (235)
                      +.++.|.++ +..+..|+..|..++.....+.+-. +++|..++|...++-.+|..++..++-.+
T Consensus       331 fipsi~ivf-~lif~eGLlGGa~YVNtF~~I~~~~~~~~REFslg~vsvsds~GI~lAgll~l~l  394 (402)
T PF02487_consen  331 FIPSIWIVF-VLIFYEGLLGGASYVNTFYRISEEVPPEDREFSLGAVSVSDSLGILLAGLLGLPL  394 (402)
T ss_pred             HhhHHHHHH-HHHHHHHHhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            346777553 4477789999999999988887654 45699999999999888888877765443

The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane

>PF12832 MFS_1_like: MFS_1 like family

Probab=94.15  E-value=0.041  Score=35.04  Aligned_cols=29  Identities=28%  Similarity=0.531  Sum_probs=23.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIIS   31 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~   31 (235)
                      ...++++++|.++||+++++.++.+..++
T Consensus        47 ~~~~~~pl~g~laDk~~~~~~~l~~~~~~   75 (77)
T PF12832_consen   47 IRFLAPPLWGFLADKFGKRKVILLGSLFM   75 (77)
T ss_pred             HHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence            34678999999999999998887776554

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.51  E-value=0.14  Score=33.24  Aligned_cols=46  Identities=15%  Similarity=-0.033  Sum_probs=40.1

Q ss_pred             ccccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHH
Q psy6058           2 AVPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQ   48 (235)
Q Consensus         2 ~~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l   48 (235)
                      ++|++|.+...++.++..+++.+..+.+...++.+.++ +.++.+.+
T Consensus        38 ~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma-~~~~~~~w   83 (85)
T PF06779_consen   38 LGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMA-LTHSFWLW   83 (85)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH-HHhchHHH
Confidence            46889999999999998889999999999999999999 88877643

Note that many members are hypothetical proteins.

>KOG1330|consensus

Probab=92.81  E-value=0.28  Score=42.14  Aligned_cols=108  Identities=13%  Similarity=-0.001  Sum_probs=54.7

Q ss_pred             cccchhhhhHHHhhhhc----hhHHHHHHHHHH-------HHHHHHHHHhhchHHHHHHHHHHHHHhhhhh-hhHhHHHH
Q psy6058           3 VPLLLGPVASSFVDKYG----CRWMTILGGIIS-------GTGFVLSATVANSIEAQYITFGCIAGCGLSL-AYVTAVVS   70 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G----~r~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~-~~~~~~~~   70 (235)
                      +..+|..++|.++||+.    +-....+.-+..       +...++.. ...+....+....++.|..... .+.+..-+
T Consensus       295 ~G~lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~-~~~~~s~~~~~il~~~g~~~~~~~~a~n~~i  373 (493)
T KOG1330|consen  295 GGSLGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFP-AFTSSSMIFGLILFLVGETISWFNWATNNPI  373 (493)
T ss_pred             hchhhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHH-hhhhHHHHHHHHHHHHHHHHHhcccccccce
Confidence            56788889999999842    211111111111       11112222 2222221212224444543333 23333345


Q ss_pred             HHhhc-ccchhHHHHHHHhhHH-HHHHHHHHHHHHHHhhh-CcH
Q psy6058          71 IAYWF-DKKRTLATSLGACGTG-IGTFVYAPLTQYWIEEY-GWR  111 (235)
Q Consensus        71 ~~~~~-~~~rg~~~~~~~~~~~-~g~~l~~~~~~~~~~~~-gw~  111 (235)
                      ..+.. |++|..+.++..+..- +|.+-+|.+.+.+.++. ||+
T Consensus       374 ~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~g~~  417 (493)
T KOG1330|consen  374 FLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLRGYK  417 (493)
T ss_pred             eeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhhCCC
Confidence            55654 5569999998665554 44455565888888763 565

>PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ]

Probab=90.18  E-value=10  Score=33.40  Aligned_cols=38  Identities=11%  Similarity=-0.005  Sum_probs=24.0

Q ss_pred             hHhHHHHHHhh-cccchhHHHHHHHhhHHHHHHHHHHHH
Q psy6058          64 YVTAVVSIAYW-FDKKRTLATSLGACGTGIGTFVYAPLT  101 (235)
Q Consensus        64 ~~~~~~~~~~~-~~~~rg~~~~~~~~~~~~g~~l~~~~~  101 (235)
                      ..+.=.+.-.. .+++++.|.....++...|-+++-.+.
T Consensus       136 DIAVDGWALT~Ls~~n~~~ASTcqtvG~~~Gyfls~tvF  174 (544)
T PF13000_consen  136 DIAVDGWALTMLSPENVGYASTCQTVGQTAGYFLSFTVF  174 (544)
T ss_pred             CceeehhhhhhcChhhcchHHHHHHhHhhhhHHHHHHHH
Confidence            33333433333 355688888888888888877765553

This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=88.31  E-value=12  Score=32.79  Aligned_cols=71  Identities=18%  Similarity=0.161  Sum_probs=51.6

Q ss_pred             HHHHHhhhhhhhHhHHHHHHhhccc--chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHH
Q psy6058          53 GCIAGCGLSLAYVTAVVSIAYWFDK--KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQ  123 (235)
Q Consensus        53 ~~l~G~~~g~~~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~  123 (235)
                      -++.|+.....+..--..+.+.+|.  +|...+|-+....++.+.+...+.+.+.+.+||.....+.-++.++
T Consensus       273 vi~y~~~~nlve~~~k~~v~~~~p~~~~~~~f~g~~~~~~gi~tl~~~l~~~~l~~~~Gw~~~a~i~Pii~li  345 (472)
T TIGR00769       273 VIAYGISINLVEVTWKSKLKAQYPSPNEYSAFMGDFSTWTGVVSVTMMLLSGNVIRKYGWLTAALITPLVMLL  345 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            3445666666666555677777665  3888899888888888877777778999999999877665554444

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>KOG3574|consensus

Probab=88.03  E-value=3.6  Score=34.95  Aligned_cols=91  Identities=12%  Similarity=0.079  Sum_probs=49.3

Q ss_pred             hhhHHHhh-----hhchhHHHH------HHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHHHhhhhhhhHhHHHHHH
Q psy6058           9 PVASSFVD-----KYGCRWMTI------LGGIISGTGFVLSATVA-----NSIEAQYITFGCIAGCGLSLAYVTAVVSIA   72 (235)
Q Consensus         9 ~~~g~l~d-----r~G~r~~~~------~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~   72 (235)
                      +++.++.|     |+|||+.-+      +|.++..++...--...     ++...+ ....++.-+..+....+.-.+.-
T Consensus        81 llWaPiVDs~y~k~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~l-t~~f~LLnflaAtQDIAVDgwAL  159 (510)
T KOG3574|consen   81 LLWAPIVDSVYSKRFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVAL-TLLFLLLNFLAATQDIAVDGWAL  159 (510)
T ss_pred             HHHHhhhHHHHHHhhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHH-HHHHHHHHHHHhhhhhhhhHHHH
Confidence            46777888     999997633      33333222221111001     222212 11234445555555566555555


Q ss_pred             hh-cccchhHHHHHHHhhHHHHHHHHHHH
Q psy6058          73 YW-FDKKRTLATSLGACGTGIGTFVYAPL  100 (235)
Q Consensus        73 ~~-~~~~rg~~~~~~~~~~~~g~~l~~~~  100 (235)
                      .. -|++.|-+.....++...|.+++..+
T Consensus       160 tmLs~e~lgyaST~q~Vg~~~GyfL~~~i  188 (510)
T KOG3574|consen  160 TMLSRENLGYASTCQSVGQTAGYFLGNVV  188 (510)
T ss_pred             HhcCHhhcCchhHHHHHHHhhhHHhhcce
Confidence            54 46678888888888777777776554

>TIGR00806 rfc RFC reduced folate carrier

Probab=87.31  E-value=1.2  Score=38.84  Aligned_cols=83  Identities=12%  Similarity=0.031  Sum_probs=53.8

Q ss_pred             ccchhhhhHHHhhhhchh--HHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hh
Q psy6058           4 PLLLGPVASSFVDKYGCR--WMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RT   80 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r--~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg   80 (235)
                      .+++++..|++-.++.+-  ..+-+..++.+...++++ ..+|+|..++. -++.+.......+....-++....++ .|
T Consensus       311 ga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~-~t~~Iw~~Y~~-yvlf~~~y~flitia~~~iA~~L~~~~~a  388 (511)
T TIGR00806       311 GAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMS-QSHDIWVLYVT-YVLFRGIYQFLVPIATFQIASSLSKELCA  388 (511)
T ss_pred             HHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhh-cccchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcccceE
Confidence            456778888887666442  334444455666667777 88999976555 56667667666666666666555454 57


Q ss_pred             HHHHHHHh
Q psy6058          81 LATSLGAC   88 (235)
Q Consensus        81 ~~~~~~~~   88 (235)
                      ...|+.+.
T Consensus       389 LvFGiNtf  396 (511)
T TIGR00806       389 LVFGINTF  396 (511)
T ss_pred             EEEecHHH
Confidence            77776554

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>KOG2325|consensus

Probab=86.44  E-value=0.26  Score=42.81  Aligned_cols=74  Identities=9%  Similarity=0.041  Sum_probs=56.0

Q ss_pred             HHHHhhhhhhhHhHHHHHHhhc-ccchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHH
Q psy6058          54 CIAGCGLSLAYVTAVVSIAYWF-DKKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        54 ~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~  127 (235)
                      ++.|++.-.......+.-++.. |++++.+.+++.....++..++|.+.......+|.|+.+.+.+...++...+
T Consensus       396 ~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l  470 (488)
T KOG2325|consen  396 VVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAAL  470 (488)
T ss_pred             heeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHH
Confidence            4445555444455556666765 7789999999999999999999999999999999998887766655444444

>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT)

Probab=85.06  E-value=18  Score=31.25  Aligned_cols=45  Identities=13%  Similarity=0.121  Sum_probs=24.6

Q ss_pred             HHHHHHHHhhhhhhhHhHHHHHHhhcccchhHHHHHHHhhHHHHHHHHH
Q psy6058          50 ITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLATSLGACGTGIGTFVYA   98 (235)
Q Consensus        50 i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~l~~   98 (235)
                      ++..++.|++.+........+.+...|+.    +..+..+.++++.++.
T Consensus       110 ~~~v~~~g~~~~~~q~s~~gla~~fp~~~----~~a~~~G~g~aGv~~s  154 (437)
T TIGR00939       110 MASVVIINSGMALLQGSLFGLAGVFPSTY----SSAVMSGQGLAGVLTS  154 (437)
T ss_pred             HHHHHHHHhhhhhhcccchhhcccCCHHH----HHHHHhcchhHHHHHH
Confidence            33456678888777777777666544332    2333344444444433

>KOG3097|consensus

Probab=84.63  E-value=3.5  Score=34.16  Aligned_cols=96  Identities=9%  Similarity=0.106  Sum_probs=61.5

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc---ch--
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK---KR--   79 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~---~r--   79 (235)
                      +.++++.+.+..++|-|+.+.++...........-  -+.+..+ +-..+..|++.+..+..--.|+++.-.+   .|  
T Consensus        72 ~~s~m~~~~~Ir~~g~K~tm~lav~~Y~lyiA~Nl--~pr~~tl-VPa~~~~G~aa~p~W~SkgtYlT~~g~~ya~~~~~  148 (390)
T KOG3097|consen   72 IDSSMFMPLLIRFLGTKWTMVLAVFPYALYIAANL--EPRYETL-VPAGLVLGMAAGPIWASKGTYLTPMGQNYANQRGE  148 (390)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhc--chhHHhh-ccHHHhhccccccccccCcceecHHHHHHHHhhhh
Confidence            45677788999999999999888777665544332  2444445 5557888999988887776666654322   24  


Q ss_pred             -----------hHHHHHHHhhHHHHHHHHHHHHHH
Q psy6058          80 -----------TLATSLGACGTGIGTFVYAPLTQY  103 (235)
Q Consensus        80 -----------g~~~~~~~~~~~~g~~l~~~~~~~  103 (235)
                                 |....+++.+.-.|..+...+...
T Consensus       149 q~~~~~~~~ffg~Ffii~~~~qv~gn~issli~~~  183 (390)
T KOG3097|consen  149 QAGDGMKVRFFGEFFIIFQCAQVWGNLISSLIMTL  183 (390)
T ss_pred             hccCceeeeehhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       233445555555665555555433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=84.13  E-value=27  Score=30.81  Aligned_cols=68  Identities=19%  Similarity=0.228  Sum_probs=47.1

Q ss_pred             HHHHhhhhhhhHhHHHHHHhhccc--chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHH
Q psy6058          54 CIAGCGLSLAYVTAVVSIAYWFDK--KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTF  121 (235)
Q Consensus        54 ~l~G~~~g~~~~~~~~~~~~~~~~--~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~  121 (235)
                      +..|+........--..+.+.+|.  ++...+|-+....++-+.+...+++.+....||+....+.-++.
T Consensus       290 i~Ygi~inLvE~~wK~~lk~~~~~~~~ysafmG~~~~~tGivtii~~~l~~~iir~~GW~~~AlitPiv~  359 (491)
T PF03219_consen  290 IAYGISINLVEVVWKSQLKQLYPDPNDYSAFMGKFSSWTGIVTIIMMFLSSNIIRRFGWRTAALITPIVI  359 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhHHHH
Confidence            334555555555555666666655  37777887777777777777788899999999998877654433

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>KOG3810|consensus

Probab=81.78  E-value=3.3  Score=34.65  Aligned_cols=121  Identities=11%  Similarity=0.045  Sum_probs=75.0

Q ss_pred             hhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhc-ccchhHHHHHHH
Q psy6058           9 PVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWF-DKKRTLATSLGA   87 (235)
Q Consensus         9 ~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~-~~~rg~~~~~~~   87 (235)
                      .+.=.+.|-.--|++++.-.+.......+.. +.++.+.+-+. -+..|...+ ...+.++++-.-. |+++-++.+..-
T Consensus        60 vpvFlLTD~lrYKPvivlq~ls~v~~w~~lv-~g~sV~~mQvl-E~FyG~~tA-aEIAYysYIYs~Vd~~~Yqrvt~y~R  136 (433)
T KOG3810|consen   60 VPVFLLTDYLRYKPVVVLQALSGVPVWIMLV-FGPSVKAMQVL-EFFYGPATA-AEIAYYSYIYSKVDPEMYKRVTGYCR  136 (433)
T ss_pred             HHHHHHhhhhhcceeeeeeccchhHHHHHHH-hcCCchheeee-hhhcChHHH-HHHhhhheeeeecCHHHHHHHHHHhH
Confidence            3344566777778888777777777777777 88888766333 666676553 3355556665543 555778888888


Q ss_pred             hhHHHHHHHHHHHHHHHHhhh--CcHHHHHHHHHHHHHHHHHHhhcc
Q psy6058          88 CGTGIGTFVYAPLTQYWIEEY--GWRGTILLLAGTFLQMCICGALMK  132 (235)
Q Consensus        88 ~~~~~g~~l~~~~~~~~~~~~--gw~~~~~~~~~~~~~~~~~~~~~~  132 (235)
                      .+...|-.+|..++..+...-  .+...-++......+..+...+..
T Consensus       137 aA~L~g~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~fLP  183 (433)
T KOG3810|consen  137 AAFLVGKFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALFLP  183 (433)
T ss_pred             HHHHHHhHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhhCC
Confidence            887788877777766665432  233333343333444444444433

>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.41  E-value=2  Score=28.95  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhH
Q psy6058          31 SGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTA   67 (235)
Q Consensus        31 ~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~   67 (235)
                      ..++.++--++.++.|.+ ++ .++.|++.|...+.-
T Consensus        60 a~iG~llD~~agTsPwgl-Iv-~lllGf~AG~lnv~R   94 (116)
T COG5336          60 AGIGWLLDKFAGTSPWGL-IV-FLLLGFGAGVLNVLR   94 (116)
T ss_pred             HHHHHHHHHhcCCCcHHH-HH-HHHHHHHHHHHHHHH
Confidence            334445545133555544 55 567788887655443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	235
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	1e-06
2cfq_A	417	Lactose permease; transport, transport mechanism,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 22/130 (16%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 10  VASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGL--SLAYVTA 67
           +  S  D+   R     G I++    +    V  +  +  + F  +  CG    + +   
Sbjct: 81  IMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPC 140

Query: 68  VVSIAYWF-DKKRTLATSLGACGTGIGTFVYAPLTQYWIEE-YGWRGTILLLAG-TFLQM 124
             ++ +W+  K+R    S+  C   +G  +   L    +     W   + + A    L  
Sbjct: 141 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 200

Query: 125 CICGALMKDP 134
               A+M+D 
Sbjct: 201 LFAFAMMRDT 210

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* Length = 417

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 18/143 (12%), Positives = 43/143 (30%), Gaps = 10/143 (6%)

Query: 10  VASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVV 69
            A   +++ G +   +L G I     + S+   +++  + +    +    +    V    
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL--EVVILKTLHMFEVPFLLVGCFK 335

Query: 70  SIAYWFDKKR--TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127
            I   F+ +   T+          +     + L     E  G++G  L+L    L   + 
Sbjct: 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

Query: 128 GALMKDPEWWIREQKRLQNPTPS 150
                   + +     L      
Sbjct: 396 SV------FTLSGPGPLSLLRRQ 412

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.2 bits (93), Expect = 4e-04
 Identities = 28/209 (13%), Positives = 57/209 (27%), Gaps = 74/209 (35%)

Query: 75  FDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRG-----TILLLAGTFL------ 122
           F+   + L T+       +  F+ A  T +   ++            LL   +L      
Sbjct: 262 FNLSCKILLTTRFK---QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQD 317

Query: 123 ---QMC--------ICGALMKDP----EWWIREQKRLQNPTPSHSIATKSNRNSIAESAA 167
              ++         I    ++D     + W    K +     +  I      +S+     
Sbjct: 318 LPREVLTTNPRRLSIIAESIRDGLATWDNW----KHVNCDKLTTII-----ESSL---NV 365

Query: 168 VDPGLVAVEIKEIRR------VLMDGGNI-ESLL--------FTEEEEMTKRGHNSVL-- 210
           ++P        E R+      V     +I   LL         ++   +  + H   L  
Sbjct: 366 LEP-------AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 211 ---NLPTFFLYD---DVSGQHREEFGKLH 233
                 T  +     ++     E    LH
Sbjct: 419 KQPKESTISIPSIYLELK-VKLENEYALH 446

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	235
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.74
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.71
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.69
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.65
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	99.62
2xut_A	524	Proton/peptide symporter family protein; transport	99.56
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	99.35
2cfq_A	417	Lactose permease; transport, transport mechanism,	99.31
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	99.2
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	99.05
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.02
2cfq_A	417	Lactose permease; transport, transport mechanism,	98.89
2xut_A	524	Proton/peptide symporter family protein; transport	98.66
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	98.45

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.74  E-value=1.9e-18  Score=147.59  Aligned_cols=144  Identities=17%  Similarity=0.183  Sum_probs=116.5

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh------------------hchHHHHHHHHHHHHHhhhhhhh
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV------------------ANSIEAQYITFGCIAGCGLSLAY   64 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~------------------~~~~~~l~i~~~~l~G~~~g~~~   64 (235)
                      ++++|++++|+++||+|||++++++.+++.++.++.+ +                  +++++.+ ++.|++.|++.|...
T Consensus        67 G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a-~~~~~~~~~~~~~~~~~~~a~~~~~l-~~~R~l~G~g~G~~~  144 (491)
T 4gc0_A           67 GCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSA-WPELGFTSINPDNTVPVYLAGYVPEF-VIYRIIGGIGVGLAS  144 (491)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH-CTTTTTSCSSSSSSCCGGGGGCHHHH-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-HHhhhhhhhcchhHHHHHHhhhHHHH-HHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999998887 4                  5678766 666999999999999


Q ss_pred             HhHHHHHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhh--------hCcHHHHHHHHHHHHHHHHH-HhhccCC
Q psy6058          65 VTAVVSIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEE--------YGWRGTILLLAGTFLQMCIC-GALMKDP  134 (235)
Q Consensus        65 ~~~~~~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~--------~gw~~~~~~~~~~~~~~~~~-~~~~~~~  134 (235)
                      +..+.+++|+.|++ |++..++.+.+..+|..+++.+...+...        .+||..+.+..+..++..+. .+.+|+|
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp  224 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESP  224 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCCh
Confidence            99999999998775 99999999999999999888887766543        34676666655554444444 4456888


Q ss_pred             chhHhhhhhcCCCC
Q psy6058         135 EWWIREQKRLQNPT  148 (235)
Q Consensus       135 ~~~~~~~~~~~~~~  148 (235)
                      +++..+++.+++.+
T Consensus       225 ~~L~~~~~~~~a~~  238 (491)
T 4gc0_A          225 RWLMSRGKQEQAEG  238 (491)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCchhHHHH
Confidence            88887776665544

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.71  E-value=2.1e-16  Score=132.86  Aligned_cols=126  Identities=13%  Similarity=0.057  Sum_probs=109.3

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      .+.++++++|+++||+|||++++++.++.+++.++.   . .+++++.+ ++.|++.|++.+...+....++++++|++ 
T Consensus        73 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~  150 (438)
T 3o7q_A           73 GYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAA-EIMNYTLF-LVGLFIIAAGLGCLETAANPFVTVLGPESS  150 (438)
T ss_dssp             HHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSCSTT
T ss_pred             HHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcc-ccccHHHH-HHHHHHHHhhHHHhhhhHHHHHHHHcCchh
Confidence            457899999999999999999999999999999988   7 78899866 56699999999999999999999998765 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHH-hhhC-------------------------cHHHHHHHHHHHHHHHHHHhh
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWI-EEYG-------------------------WRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~-~~~g-------------------------w~~~~~~~~~~~~~~~~~~~~  130 (235)
                      |+++.++.+.+..+|..++|.+++.+. +..+                         ||+.|++.+++.++..++.++
T Consensus       151 r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  228 (438)
T 3o7q_A          151 GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIML  228 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999988 5544                         999998777665555554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.69  E-value=1.2e-16  Score=134.80  Aligned_cols=123  Identities=13%  Similarity=0.183  Sum_probs=110.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATV----ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-   77 (235)
                      ++.++++++|+++||+|||++++++.++.+++.++.+ +    +++++.+ ++.|++.|++.+...+....++.+++|+ 
T Consensus        74 ~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~l~G~~~~~~~~~~~~~i~~~~~~~  151 (451)
T 1pw4_A           74 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVM-FVLLFLCGWFQGMGWPPCGRTMVHWWSQK  151 (451)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCHHHHSSSSHH-HHHHHHHHHHHHHTHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHH-hhhhccccHHHH-HHHHHHHHHHhhhccchHHHHHHHHCCch
Confidence            4568899999999999999999999999999999999 8    8888866 5569999999999999999999999976 


Q ss_pred             chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHH
Q psy6058          78 KRTLATSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        78 ~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~  127 (235)
                      +|+++.++...+..+|..++|.+++++.+..| ||+.|++.+++.++..++
T Consensus       152 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~  202 (451)
T 1pw4_A          152 ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALF  202 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            59999999999999999999999999989898 999999888766555444

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.65  E-value=1.5e-15  Score=129.70  Aligned_cols=125  Identities=17%  Similarity=0.179  Sum_probs=109.2

Q ss_pred             cccchhhhhHHHhhh-hchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-c--
Q psy6058           3 VPLLLGPVASSFVDK-YGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-K--   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr-~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~--   78 (235)
                      ++.++++++|+++|| +|||++++++.++..++.++.+ ++++++.+ ++.|++.|++.+...+....++++++|+ +  
T Consensus        66 ~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~  143 (491)
T 4aps_A           66 MVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA-LPFGASAL-FGSIILIIIGTGFLKPNVSTLVGTLYDEHDRR  143 (491)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-SCCSTTHH-HHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTH
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-HhhhHHHH-HHHHHHHHHHHHhccchHHHHHHHHcCccccc
Confidence            457889999999999 8999999999999999999999 89998866 5569999999999999999999999865 4  


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      |+.+.++++.+..+|..++|.+++.+.+..||++.|++.++..++..+..+
T Consensus       144 r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  194 (491)
T 4aps_A          144 RDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY  194 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            677888899999999999999999999999999999987766555544433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=99.62  E-value=5.5e-16  Score=127.94  Aligned_cols=122  Identities=16%  Similarity=0.152  Sum_probs=109.4

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc-chhH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK-KRTL   81 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~-~rg~   81 (235)
                      .+.+++++.|+++||+|||++++++.++..++.++.. ++++++.+ +..|++.|++.+...+....++.+++|+ +|++
T Consensus        47 ~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~  124 (375)
T 2gfp_A           47 TYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV-TTSSLTVL-IAASAMQGMGTGVGGVMARTLPRDLYERTQLRH  124 (375)
T ss_dssp             HHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCS
T ss_pred             HHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHH
Confidence            4568899999999999999999999999999999999 88888866 5569999999999999999999999875 5999


Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHH
Q psy6058          82 ATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCI  126 (235)
Q Consensus        82 ~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~  126 (235)
                      +.++...+..+|..++|.+++.+.+..|||+.|++.+++.++..+
T Consensus       125 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (375)
T 2gfp_A          125 ANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF  169 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999989999999987776655544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=99.56  E-value=3.6e-14  Score=122.12  Aligned_cols=125  Identities=12%  Similarity=0.058  Sum_probs=107.9

Q ss_pred             cccchhhhhHHHhhhh-chhHHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-h
Q psy6058           3 VPLLLGPVASSFVDKY-GCRWMTILGGIISGTGFVLSATVAN-SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-R   79 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~-G~r~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-r   79 (235)
                      .+.++++++|+++||+ |||+++.++.++..++.++.. +++ +++.+ ++.|++.|++.+...+....++.+++|++ |
T Consensus        66 ~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r  143 (524)
T 2xut_A           66 GVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA-IFEHSVQGF-YTGLFLIALGSGGIKPLVSSFMGDQFDQSNK  143 (524)
T ss_dssp             HHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH-HTSSCHHHH-HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTT
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HhcccHHHH-HHHHHHHHHhccccchhHHHHHHHHcCccch
Confidence            4567899999999999 999999999999999999998 888 88866 55699999999999999999999998775 8


Q ss_pred             hHHHHH---HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          80 TLATSL---GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        80 g~~~~~---~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      +++.+.   +..+..+|..++|.+++.+.+..||++.|++.+++.++..+..+
T Consensus       144 ~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          144 SLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            776666   88999999999999999999989999999987776655544443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=99.35  E-value=1.6e-11  Score=103.33  Aligned_cols=126  Identities=13%  Similarity=0.072  Sum_probs=102.0

Q ss_pred             cccchhhhhHHHhhhh--chhHHHHHHHHHHH-HHHHHHHHhhc--hHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhccc
Q psy6058           3 VPLLLGPVASSFVDKY--GCRWMTILGGIISG-TGFVLSATVAN--SIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDK   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~--G~r~~~~~~~~~~~-~~~~~~~~~~~--~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~   77 (235)
                      +..++.++.|++.||+  |+|+.+.++.++.. ++.++.. +.+  +.+.+ +...++.|++.+...+....++.+.+|+
T Consensus       300 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~  377 (451)
T 1pw4_A          300 AGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYW-MNPAGNPTVD-MICMIVIGFLIYGPVMLIGLHALELAPK  377 (451)
T ss_dssp             HHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTT-SCCTTCHHHH-HHHHHHHHHHHTHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH-HhcccCHHHH-HHHHHHHHHHHhchHHHHHHHHHHHhch
Confidence            3467889999999999  99999888887766 6666666 553  45534 4446777888888888888899999887


Q ss_pred             c-hhHHHHHHHhhHHH-HHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          78 K-RTLATSLGACGTGI-GTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        78 ~-rg~~~~~~~~~~~~-g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      + |+++.|+.+....+ |..++|.+.+.+.+..||+..|++.+++.++..++.++
T Consensus       378 ~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          378 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            6 99999999999999 99999999999999999999999888776666555443

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=99.31  E-value=1.2e-11  Score=103.65  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=98.5

Q ss_pred             cchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHH
Q psy6058           5 LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLAT   83 (235)
Q Consensus         5 ~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~   83 (235)
                      .++.++.|+++||+|||+++..+.++..++.++.. +.++.+.+ ++..++.+++.+...+....++.+.+|++ |+++.
T Consensus       273 ~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~  350 (417)
T 2cfq_A          273 ASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEV-VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIY  350 (417)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHT-TCCSHHHH-HHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH-HhccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            46788999999999999999988888888777776 66676645 44456667776666666778889998876 99999


Q ss_pred             HH-HHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          84 SL-GACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        84 ~~-~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ++ ++....+|+.++|.+.+.+.+..|++..|.+.+++.++..+..+
T Consensus       351 g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~  397 (417)
T 2cfq_A          351 LVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence            98 58888999999999999999988888888887776666555543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=99.20  E-value=2.2e-10  Score=95.98  Aligned_cols=121  Identities=15%  Similarity=0.080  Sum_probs=98.0

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccchhHH
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKKRTLA   82 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~rg~~   82 (235)
                      +..++.++.|+++||+|||+.+.++.++..++.++.. +.++.+.+ +. .++.|++.+..++....+..+.+|++++.+
T Consensus       307 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  383 (438)
T 3o7q_A          307 CFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA-FAGGHVGL-IA-LTLCSAFMSIQYPTIFSLGIKNLGQDTKYG  383 (438)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCCHHHHH-HH-HHHHHHHHTTHHHHHHHHHHSSCGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HcCCcHHH-HH-HHHHHHHHHHHHHHHHHHHHhhccccccch
Confidence            3467889999999999999999999999988888887 77776543 33 477788888888888888888888778888


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHHHhhhC-cHHHHHHHHHHHHHHHHH
Q psy6058          83 TSLGACGTGIGTFVYAPLTQYWIEEYG-WRGTILLLAGTFLQMCIC  127 (235)
Q Consensus        83 ~~~~~~~~~~g~~l~~~~~~~~~~~~g-w~~~~~~~~~~~~~~~~~  127 (235)
                      .++.. ...+|..++|.+.+.+.+..| ++..|++.+++.++..++
T Consensus       384 ~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  428 (438)
T 3o7q_A          384 SSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF  428 (438)
T ss_dssp             HHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred             hhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            88776 556999999999999999999 998888765554444333

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=99.05  E-value=2.8e-10  Score=96.91  Aligned_cols=124  Identities=13%  Similarity=0.058  Sum_probs=92.0

Q ss_pred             ccchhhhhHHHhhhhchhHHHH-----HHHHHHHHHHHHHHHhhc---------hHHHHHHHHHHHHHhhhhhhhHhHHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTI-----LGGIISGTGFVLSATVAN---------SIEAQYITFGCIAGCGLSLAYVTAVV   69 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~-----~~~~~~~~~~~~~~~~~~---------~~~~l~i~~~~l~G~~~g~~~~~~~~   69 (235)
                      ..++.++.+++.||+|||+...     ++.++..++.++.. ...         +.+.+ +...++.|++.+...+....
T Consensus       332 ~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~  409 (491)
T 4aps_A          332 IMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMA-IPGALYGTSGKVSPLWL-VGSWALVILGEMLISPVGLS  409 (491)
T ss_dssp             HHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTH-HHHHHCCCCTTCCTHHH-HHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHH-HHHHhcCCCCCccHHHH-HHHHHHHHHHHHHHhHHHHH
Confidence            4567888999999999986544     77777777776665 432         44434 44467789998888888899


Q ss_pred             HHHhhcccc-hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHhh
Q psy6058          70 SIAYWFDKK-RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGAL  130 (235)
Q Consensus        70 ~~~~~~~~~-rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~~  130 (235)
                      ++.+.+|++ |+++.|+.+....+|..+++.+.+.+.+. ++.+.|.+.+++.++..++.++
T Consensus       410 ~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  470 (491)
T 4aps_A          410 VTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVF  470 (491)
T ss_dssp             HHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            999988876 99999999999999999999998777654 6666777766665555555444

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.02  E-value=4.4e-09  Score=89.43  Aligned_cols=125  Identities=11%  Similarity=0.029  Sum_probs=84.6

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh---chHHHHHHHHHHHHHhhhhh-hhHhHHHHHHhhcccc-
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA---NSIEAQYITFGCIAGCGLSL-AYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~---~~~~~l~i~~~~l~G~~~g~-~~~~~~~~~~~~~~~~-   78 (235)
                      ..++.++++++.||+|||+.++.+.....++.+..+ ..   .......+...++...+.+. ..+....+.+|.+|.+ 
T Consensus       325 ~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~  403 (491)
T 4gc0_A          325 NLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLG-TAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAI  403 (491)
T ss_dssp             HHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTT
T ss_pred             HHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhH
Confidence            456788999999999999999999888887776654 32   11111112212222222222 2345567889999987 


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHh------hhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIE------EYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~------~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      |+++.|+......+|+++++.+.+.+.+      ..++.+.|++.++++++..++.+
T Consensus       404 R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~  460 (491)
T 4gc0_A          404 RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW  460 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888877666533      34566677777776666555543

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=98.89  E-value=9.6e-11  Score=98.20  Aligned_cols=119  Identities=13%  Similarity=0.081  Sum_probs=76.8

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHH---HHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcc---
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS---ATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFD---   76 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~---   76 (235)
                      ++.++++++|+++||+|||++++++.++..++....   . +........+..+++.|++.+..++.....+..+.+   
T Consensus        55 ~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  133 (417)
T 2cfq_A           55 FSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFI-FGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS  133 (417)
T ss_dssp             HHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHT-HHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            457889999999999999999998887765432111   1 221111001222444455454444444444444443   


Q ss_pred             cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHH
Q psy6058          77 KKRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQ  123 (235)
Q Consensus        77 ~~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~  123 (235)
                      ++++...+....+..+|..++|.+++++.+ .+|++.|++.++..++
T Consensus       134 ~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~  179 (417)
T 2cfq_A          134 RRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALI  179 (417)
T ss_dssp             HHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTT
T ss_pred             hhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHH
Confidence            346667788888889999999999998886 5899998876555433

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=98.66  E-value=5.5e-08  Score=83.42  Aligned_cols=106  Identities=16%  Similarity=-0.002  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHHHHHHHhhHH
Q psy6058          22 WMTILGGIISGTGFVLSATVA---------NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLATSLGACGTG   91 (235)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~---------~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~~~~~~~~~~   91 (235)
                      +.+.++.++.+++.++.. +.         .+.+.+ +...++.|++.+...+....++.+..|++ ||+++|+.++...
T Consensus       374 ~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~  451 (524)
T 2xut_A          374 RKMGAGIAITGLSWIVVG-TIQLMMDGGSALSIFWQ-ILPYALLTFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVT  451 (524)
T ss_dssp             HHHHTHHHHHHHHHHTTT-TTTTTTTTTCCCCSHHH-HHHHHHHHHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHhcCCCCcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHH
Confidence            456677777777777666 53         245544 44577889999988888888999988775 9999999999999


Q ss_pred             HHHHHHHHHHHHHHhhh--Cc---------HHHHHHHHHHHHHHHHHHh
Q psy6058          92 IGTFVYAPLTQYWIEEY--GW---------RGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        92 ~g~~l~~~~~~~~~~~~--gw---------~~~~~~~~~~~~~~~~~~~  129 (235)
                      +|..++|.+.+.+.+..  +|         +..|++.+++.++..++.+
T Consensus       452 ~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  500 (524)
T 2xut_A          452 VGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFA  500 (524)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHHHHHH
Confidence            99999999999887632  23         2335555555554444433

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=98.45  E-value=5.2e-08  Score=79.96  Aligned_cols=111  Identities=13%  Similarity=-0.008  Sum_probs=79.9

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHH-HHHHHH--HHHHh--hchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGII-SGTGFV--LSATV--ANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~-~~~~~~--~~~~~--~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      ..++.++.+++.||+|++  +..+... ...+..  ... .  .++.+.+ +...++.|++.+...+....++.+.+|++
T Consensus       248 ~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~p~~  323 (375)
T 2gfp_A          248 AFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPD-WFGVMNVWTL-LVPAALFFFGAGMLFPLATSGAMEPFPFL  323 (375)
T ss_dssp             HHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHH-HHHHHHHHHH-HHHHHHHHHHHHHTSSTTHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-hhccccHHHH-HHHHHHHHHHHHHhhHHHHHHHHHhCCcc
Confidence            456778888888888873  2333332 222222  222 1  1244433 44467789999988899999999988867


Q ss_pred             hhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHH
Q psy6058          79 RTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLA  118 (235)
Q Consensus        79 rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~  118 (235)
                      |+++.++.+....+|..++|.+.+.+.+..+++..+++.+
T Consensus       324 ~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~  363 (375)
T 2gfp_A          324 AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTL  363 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence            9999999999999999999999999988878877776543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	235
d1pw4a_	447	f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es	1e-04
d1pv7a_	417	f.38.1.2 (A:) Lactose permease {Escherichia coli [	0.002

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 17/136 (12%), Positives = 39/136 (28%), Gaps = 3/136 (2%)

Query: 5   LLLGPVASSFVDKYGCRWMTILGGIISGTGFVLS--ATVANSIEAQYITFGCIAGCGLSL 62
                +  S  D+   R     G I++    +       A S  A       + G    +
Sbjct: 73  GFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGM 132

Query: 63  AYVTAVVSIAYWFDK-KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTF 121
            +     ++ +W+ + +R    S+  C   +G  +   L    +  +      L +    
Sbjct: 133 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192

Query: 122 LQMCICGALMKDPEWW 137
             +    A     +  
Sbjct: 193 AILVALFAFAMMRDTP 208

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

 Score = 36.7 bits (83), Expect = 0.002
 Identities = 20/137 (14%), Positives = 44/137 (32%), Gaps = 7/137 (5%)

Query: 10  VASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVV 69
            A   +++ G +   +L G I     + S+   +++  + +    +    +    V    
Sbjct: 278 FAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSAL--EVVILKTLHMFEVPFLLVGCFK 335

Query: 70  SIAYWFDKKR--TLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCIC 127
            I   F+ +   T+          +     + L     E  G++G  L+L    L   + 
Sbjct: 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLI 395

Query: 128 GALM---KDPEWWIREQ 141
                    P   +R Q
Sbjct: 396 SVFTLSGPGPLSLLRRQ 412

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	235
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.65
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	99.47
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	99.16
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.95

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.7e-16  Score=129.16  Aligned_cols=124  Identities=14%  Similarity=0.186  Sum_probs=104.8

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVA----NSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK   78 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~   78 (235)
                      .+.++++++|+++||+|||+++.++.++..++.++.+ ++    ++++.+ ++.|++.|++.+..++....++++++|++
T Consensus        71 ~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~i~~~~~~~  148 (447)
T d1pw4a_          71 AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG-FVPWATSSIAVM-FVLLFLCGWFQGMGWPPCGRTMVHWWSQK  148 (447)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-HCHHHHSSSSHH-HHHHHHHHHHHHHTHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhcc-ccchhhhhHHHH-HHHHHHHHHhhhhhhhHHHHHHHHHHHhh
Confidence            4578999999999999999999999999999988887 55    355545 66699999999999999999999998765


Q ss_pred             -hhHHHHHHHhhHHHHHHHHHHHHHHHHhhh-CcHHHHHHHHHHHHHHHHHH
Q psy6058          79 -RTLATSLGACGTGIGTFVYAPLTQYWIEEY-GWRGTILLLAGTFLQMCICG  128 (235)
Q Consensus        79 -rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~-gw~~~~~~~~~~~~~~~~~~  128 (235)
                       |+++.++.+.+..+|..++|.+.+.+.... +|++.|++.+.+.++..++.
T Consensus       149 ~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~  200 (447)
T d1pw4a_         149 ERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFA  200 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHH
Confidence             999999999999999999999988877654 79999988777655554443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=99.47  E-value=5.6e-13  Score=107.64  Aligned_cols=124  Identities=15%  Similarity=0.151  Sum_probs=106.8

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-hhHH
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-RTLA   82 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-rg~~   82 (235)
                      ..++..+.+++.||+|+|+.+.++.++..++.++.. +.++.+.+ ++..++.|++.+...+....++.+.+|++ |+++
T Consensus       272 ~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (417)
T d1pv7a_         272 NASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS-FATSALEV-VILKTLHMFEVPFLLVGCFKYITSQFEVRFSATI  349 (417)
T ss_dssp             HHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH-TCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHH
T ss_pred             cccchhhhhhhhcccccccchhhhHHHHHHhhhccc-cccccchh-hHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHH
Confidence            456788999999999999999999999999999999 88888866 45578889999999999999999998776 9999


Q ss_pred             HHHH-HhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          83 TSLG-ACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        83 ~~~~-~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      .++. +....+|..++|.+.+++.+++|++..|++.+++.++..++.+
T Consensus       350 ~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~  397 (417)
T d1pv7a_         350 YLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV  397 (417)
T ss_dssp             HHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence            9975 5677899999999999999999999999988876665555543

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=3.2e-10  Score=92.77  Aligned_cols=125  Identities=12%  Similarity=0.053  Sum_probs=87.1

Q ss_pred             ccchhhhhHHHhhhhchhHHHHHHHHHHHH---HHHHHHH-hhchHHHHHHHHHHHHHhhhhhhhHhHHHHHHhhcccc-
Q psy6058           4 PLLLGPVASSFVDKYGCRWMTILGGIISGT---GFVLSAT-VANSIEAQYITFGCIAGCGLSLAYVTAVVSIAYWFDKK-   78 (235)
Q Consensus         4 ~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~---~~~~~~~-~~~~~~~l~i~~~~l~G~~~g~~~~~~~~~~~~~~~~~-   78 (235)
                      ..++.++.|++.||++|+.......+...+   +.++... ...+.+.. ++..++.|++.+...+....++.+.+|++ 
T Consensus       298 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~  376 (447)
T d1pw4a_         298 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVD-MICMIVIGFLIYGPVMLIGLHALELAPKKA  376 (447)
T ss_dssp             HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHH-HHHHHHHHHHHTHHHHHHHHHHHHTSCTTH
T ss_pred             hhhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcCHHH
Confidence            467889999999999876544333332222   2222220 12344433 44466778888777788888889988876 


Q ss_pred             hhHHHHHHHhhHHH-HHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHHHHHHh
Q psy6058          79 RTLATSLGACGTGI-GTFVYAPLTQYWIEEYGWRGTILLLAGTFLQMCICGA  129 (235)
Q Consensus        79 rg~~~~~~~~~~~~-g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~~~~~~  129 (235)
                      ||++.|+.+....+ |..++|.+.+++.+++||+..|++.+++.++..++.+
T Consensus       377 ~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~  428 (447)
T d1pw4a_         377 AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  428 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            99999998877666 5567899999999999999999887776655555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1.6e-09  Score=86.82  Aligned_cols=120  Identities=13%  Similarity=0.010  Sum_probs=77.7

Q ss_pred             cccchhhhhHHHhhhhchhHHHHHHHHHHHHHHHHHHHhhchHHHH---HHHHHHHHHhhhhhhhHhHHHHHHhh-ccc-
Q psy6058           3 VPLLLGPVASSFVDKYGCRWMTILGGIISGTGFVLSATVANSIEAQ---YITFGCIAGCGLSLAYVTAVVSIAYW-FDK-   77 (235)
Q Consensus         3 ~~~i~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~l---~i~~~~l~G~~~g~~~~~~~~~~~~~-~~~-   77 (235)
                      .+.++++++|+++||+|||++++++.++..++.++.. ...+....   .+..+++.+.+.+............. .++ 
T Consensus        55 ~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (417)
T d1pv7a_          55 FSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF-IFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVS  133 (417)
T ss_dssp             HHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH-HHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHhhhcccccccchhhcccccccchh
Confidence            4578899999999999999999999988888887777 65544322   12224444444444444444433332 222 


Q ss_pred             -chhHHHHHHHhhHHHHHHHHHHHHHHHHhhhCcHHHHHHHHHHHHHH
Q psy6058          78 -KRTLATSLGACGTGIGTFVYAPLTQYWIEEYGWRGTILLLAGTFLQM  124 (235)
Q Consensus        78 -~rg~~~~~~~~~~~~g~~l~~~~~~~~~~~~gw~~~~~~~~~~~~~~  124 (235)
                       ++....+........+..+++.+++.+.+. +|+..+........+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~  180 (417)
T d1pv7a_         134 RRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALIL  180 (417)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHH
Confidence             255566677777888888898888887765 5555555544433333