Psyllid ID: psy6072

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------
Protein Sequence
MSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccccccccccccccccHHHHHHHHcccEEccEEEEEEHHHHHHccccHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHcccccccccEEEccccccHcccccEEEccccccccccHHHHHHcHHHHHEEcccHHccccEEEEEHHHHHHcccHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSRLRNLYEALSrkkidvgdddvsiaegknpaggadgagklplesasdapQLARVLGLVDLTMLGVGATLGVGVYVLAGsvarnqagpsVVISFAIAAVTSLFSVQL
Flexible Loop (DISEMBL)
MSRLRNLYEalsrkkidvgdddvSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL
Low Complexity Region (SEG)
MSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL
Disordered region (IsUnstruct)
***************************************************LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS***
Disordered Region (DISOPRED)
*****NL*EALSRKKIDVG*************************************GLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL
Disordered Region (DISEMBL)
MSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL
Disordered Region (DISPRO)
*SRLRNLYEALSRKKIDVGDDDVSIAEGKN****ADGAGKLPLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSRLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	107	2.2.26 [Sep-21-2011]
P70423	618	Cationic amino acid trans	yes	N/A	0.579	0.100	0.548	1e-11
Q8WY07	619	Cationic amino acid trans	yes	N/A	0.560	0.096	0.583	1e-11
O08812	619	Cationic amino acid trans	yes	N/A	0.579	0.100	0.548	1e-11
Q5PR34	640	Low affinity cationic ami	no	N/A	0.504	0.084	0.592	4e-11
P30825	629	High affinity cationic am	no	N/A	0.579	0.098	0.532	5e-11
P30823	624	High affinity cationic am	no	N/A	0.579	0.099	0.532	5e-11
Q09143	622	High affinity cationic am	no	N/A	0.579	0.099	0.532	6e-11
P18581	657	Low affinity cationic ami	no	N/A	0.551	0.089	0.583	2e-10
A8I499	657	Low affinity cationic ami	no	N/A	0.551	0.089	0.566	3e-10
P52569	658	Low affinity cationic ami	no	N/A	0.551	0.089	0.566	4e-10

>sp|P70423|CTR3_MOUSE Cationic amino acid transporter 3 OS=Mus musculus GN=Slc7a3 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           LE      +LAR L  +DL  LGVG+TLG GVYVLAG VA+++AGPS+VI F +AA++S+
Sbjct: 19  LELGMGETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSV 78

Query: 103 FS 104
            +
Sbjct: 79  LA 80

Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner.
Mus musculus (taxid: 10090)

>sp|Q8WY07|CTR3_HUMAN Cationic amino acid transporter 3 OS=Homo sapiens GN=SLC7A3 PE=1 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 46/60 (76%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           LES     +LAR L  +DL  LGVG+TLG GVYVLAG VA+++AGPS+VI F +AA++S+
Sbjct: 19  LESGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSV 78

Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner.

Homo sapiens (taxid: 9606)

>sp|O08812|CTR3_RAT Cationic amino acid transporter 3 OS=Rattus norvegicus GN=Slc7a3 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 34/62 (54%), Positives = 45/62 (72%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           LE      +LAR L  +DL  LGVG+TLG GVYVLAG VA+ +AGPS+VI F +AA++S+
Sbjct: 19  LELGMGETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKEKAGPSIVICFLVAALSSV 78

Query: 103 FS 104
            +
Sbjct: 79  LA 80

Mediates the uptake of the cationic amino acids arginine, lysine and ornithine in a sodium-independent manner.

Rattus norvegicus (taxid: 10116)

>sp|Q5PR34|CTR2_DANRE Low affinity cationic amino acid transporter 2 OS=Danio rerio GN=slc7a2 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/54 (59%), Positives = 41/54 (75%)

Query: 51  QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           +L R L  VDL  LGVG+TLG GVYVLAG VA+  +GPS+V+SF IAA+ S+ +
Sbjct: 27  KLCRCLSTVDLIALGVGSTLGAGVYVLAGEVAKGSSGPSIVVSFLIAALASVMA 80

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine).

Danio rerio (taxid: 7955)

>sp|P30825|CTR1_HUMAN High affinity cationic amino acid transporter 1 OS=Homo sapiens GN=SLC7A1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           ++ + +  +L+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++VISF IAA+ S+
Sbjct: 19  VDCSREETRLSRCLNTFDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASV 78

Query: 103 FS 104
            +
Sbjct: 79  LA 80

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Homo sapiens (taxid: 9606)

>sp|P30823|CTR1_RAT High affinity cationic amino acid transporter 1 OS=Rattus norvegicus GN=Slc7a1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           ++ + +  +L+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++VISF IAA+ S+
Sbjct: 19  VDCSREESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASV 78

Query: 103 FS 104
            +
Sbjct: 79  LA 80

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Rattus norvegicus (taxid: 10116)

>sp|Q09143|CTR1_MOUSE High affinity cationic amino acid transporter 1 OS=Mus musculus GN=Slc7a1 PE=2 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           ++ + +  +L+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++VISF IAA+ S+
Sbjct: 19  VDCSREESRLSRCLNTYDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASV 78

Query: 103 FS 104
            +
Sbjct: 79  LA 80

High-affinity, low capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine) in non-hepatic tissues. May also function as an ecotropic retroviral leukemia receptor.

Mus musculus (taxid: 10090)

>sp|P18581|CTR2_MOUSE Low affinity cationic amino acid transporter 2 OS=Mus musculus GN=Slc7a2 PE=1 SV=3

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           L+S  D+ +L R L  VDL  LGVG+TLG GVYVLAG VA+  +GPS+V+SF IAA+ S+
Sbjct: 22  LDSLEDS-KLCRCLTTVDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASV 80

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Mus musculus (taxid: 10090)

>sp|A8I499|CTR2_PIG Low affinity cationic amino acid transporter 2 OS=Sus scrofa GN=SLC7A2 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 45/60 (75%), Gaps = 1/60 (1%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           L+S  D+ +L R L  +DL  LGVG+TLG GVYVLAG VA+  +GPS+V+SF IAA+ S+
Sbjct: 22  LDSLEDS-KLCRCLSTMDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASV 80

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Sus scrofa (taxid: 9823)

>sp|P52569|CTR2_HUMAN Low affinity cationic amino acid transporter 2 OS=Homo sapiens GN=SLC7A2 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 43  LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
           L+S  D  +L R L  +DL  LGVG+TLG GVYVLAG VA+  +GPS+V+SF IAA+ S+
Sbjct: 22  LDSLEDT-KLCRCLSTMDLIALGVGSTLGAGVYVLAGEVAKADSGPSIVVSFLIAALASV 80

Low-affinity, high capacity permease involved in the transport of the cationic amino acids (arginine, lysine and ornithine). Plays a regulatory role in classical or alternative activation of macrophages.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
307197497	714	Low affinity cationic amino acid transpo	0.504	0.075	0.759	6e-15
332030638	713	Low affinity cationic amino acid transpo	0.700	0.105	0.441	2e-14
380019347	602	PREDICTED: LOW QUALITY PROTEIN: high aff	0.672	0.119	0.479	4e-14
332017888	603	High affinity cationic amino acid transp	0.691	0.122	0.469	5e-14
307169946	616	Cationic amino acid transporter 3 [Campo	0.504	0.087	0.759	7e-14
195377771	579	GJ11800 [Drosophila virilis] gi|19415481	0.532	0.098	0.719	7e-14
307170851	612	Low affinity cationic amino acid transpo	0.700	0.122	0.450	9e-14
328791011	571	PREDICTED: high affinity cationic amino	0.672	0.126	0.469	2e-13
345483731	620	PREDICTED: high affinity cationic amino	0.504	0.087	0.703	2e-13
345483725	599	PREDICTED: high affinity cationic amino	0.504	0.090	0.703	2e-13

>gi|307197497|gb|EFN78731.1| Low affinity cationic amino acid transporter 2 [Harpegnathos saltator]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 48/54 (88%)

Query: 51  QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           QLAR L  VDLT LG+GATLGVGVYVLAGSV+++ AGP+VVISFAIAAV S+F+
Sbjct: 146 QLARYLSAVDLTALGIGATLGVGVYVLAGSVSKSTAGPAVVISFAIAAVASMFA 199

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030638|gb|EGI70326.1| Low affinity cationic amino acid transporter 2 [Acromyrmex echinatior]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 45/102 (44%), Positives = 60/102 (58%), Gaps = 27/102 (26%)

Query: 3   RLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLT 62
           +LR+LY+  SR+K+                              ++   LARVL  +DLT
Sbjct: 126 KLRDLYKTFSRRKVI---------------------------DNTEESTLARVLSTLDLT 158

Query: 63  MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
            LG+G+TLGVG Y+LAGSVA+  AGP+VVISFAIAAV S+F+
Sbjct: 159 ALGIGSTLGVGAYILAGSVAKKHAGPAVVISFAIAAVASMFA 200

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380019347|ref|XP_003693571.1| PREDICTED: LOW QUALITY PROTEIN: high affinity cationic amino acid transporter 1-like [Apis florea]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 47/98 (47%), Positives = 60/98 (61%), Gaps = 26/98 (26%)

Query: 7   LYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLTMLGV 66
           L++ALSR++ID                          E+  D  +LARVLGL DLT LGV
Sbjct: 5   LWKALSRRRID--------------------------ENLEDKSELARVLGLFDLTALGV 38

Query: 67  GATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           G+TLG+GVYVLAGS+A+  AGP+V ISF IAA+ S F+
Sbjct: 39  GSTLGLGVYVLAGSIAKETAGPAVCISFLIAAIASAFA 76

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017888|gb|EGI58548.1| High affinity cationic amino acid transporter 1 [Acromyrmex echinatior]

 Score = 81.6 bits (200), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 24/98 (24%)

Query: 7   LYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLTMLGV 66
           L++ALSR++I++ ++D                        ++  +LARVLGL DLT LGV
Sbjct: 5   LWKALSRRRIELENED------------------------TNGERLARVLGLFDLTALGV 40

Query: 67  GATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           GATLG+GVYVLAGSVA+  AGP+V +SF IAA+ S F+
Sbjct: 41  GATLGLGVYVLAGSVAKETAGPAVSVSFLIAAIASAFA 78

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169946|gb|EFN62455.1| Cationic amino acid transporter 3 [Camponotus floridanus]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/54 (75%), Positives = 47/54 (87%)

Query: 51  QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           QLARVLGL DLT LGVGATLG+GVYVLAGSVA++ AGP+V ISF IAA+ S F+
Sbjct: 37  QLARVLGLFDLTALGVGATLGLGVYVLAGSVAKDTAGPAVCISFLIAAIASAFA 90

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195377771|ref|XP_002047661.1| GJ11800 [Drosophila virilis] gi|194154819|gb|EDW70003.1| GJ11800 [Drosophila virilis]

 Score = 81.3 bits (199), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 41/57 (71%), Positives = 48/57 (84%)

Query: 48  DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           D P+LAR+L L DLT LGVG+TLG+GVYVLAG VAR+ AGP+V I FAIAAV SLF+
Sbjct: 18  DGPKLARILRLHDLTALGVGSTLGLGVYVLAGQVARHIAGPAVGICFAIAAVASLFA 74

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170851|gb|EFN62962.1| Low affinity cationic amino acid transporter 2 [Camponotus floridanus]

 Score = 80.9 bits (198), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 27/102 (26%)

Query: 3   RLRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLT 62
           ++R++Y+  SRKK+      V+I++                       +LARVL  +DLT
Sbjct: 17  KIRDVYKVFSRKKV------VNISQDS---------------------KLARVLSTLDLT 49

Query: 63  MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
            LGVG+TLGVGVYVLAG+VAR+ AGP+V++SFAIAA+ S+F+
Sbjct: 50  ALGVGSTLGVGVYVLAGTVARSTAGPAVIVSFAIAAIASMFA 91

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791011|ref|XP_393144.3| PREDICTED: high affinity cationic amino acid transporter 1-like [Apis mellifera]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 46/98 (46%), Positives = 60/98 (61%), Gaps = 26/98 (26%)

Query: 7   LYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLESASDAPQLARVLGLVDLTMLGV 66
           L++ALSR++ID                          E+  +  +LARVLGL DLT LGV
Sbjct: 5   LWKALSRRRID--------------------------ENLENKSELARVLGLFDLTALGV 38

Query: 67  GATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           G+TLG+GVYVLAGS+A+  AGP+V ISF IAA+ S F+
Sbjct: 39  GSTLGLGVYVLAGSIAKETAGPAVCISFLIAAIASGFA 76

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483731|ref|XP_003424873.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 4 [Nasonia vitripennis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/54 (70%), Positives = 48/54 (88%)

Query: 51  QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           +LARVLG++DLT LGVG+TLG+GVYVLAGSVA++ AGP+V ISF IAA+ S F+
Sbjct: 24  ELARVLGIIDLTALGVGSTLGLGVYVLAGSVAKDTAGPAVCISFLIAAIASAFA 77

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483725|ref|XP_003424871.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 2 [Nasonia vitripennis] gi|345483727|ref|XP_001599622.2| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 1 [Nasonia vitripennis] gi|345483729|ref|XP_003424872.1| PREDICTED: high affinity cationic amino acid transporter 1-like isoform 3 [Nasonia vitripennis]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/54 (70%), Positives = 48/54 (88%)

Query: 51  QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           +LARVLG++DLT LGVG+TLG+GVYVLAGSVA++ AGP+V ISF IAA+ S F+
Sbjct: 24  ELARVLGIIDLTALGVGSTLGLGVYVLAGSVAKDTAGPAVCISFLIAAIASAFA 77

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	107
FB|FBgn0036764	633	CG5535 [Drosophila melanogaste	0.598	0.101	0.584	3.7e-14
FB|FBgn0036493	1063	CG7255 [Drosophila melanogaste	0.598	0.060	0.625	1e-13
FB|FBgn0037203	604	slif "slimfast" [Drosophila me	0.504	0.089	0.722	3.2e-13
UNIPROTKB|Q5JR49	121	SLC7A1 "High affinity cationic	0.579	0.512	0.532	2.4e-12
UNIPROTKB|Q8WY07	619	SLC7A3 "Cationic amino acid tr	0.579	0.100	0.564	5.1e-12
WB|WBGene00015197	585	B0454.6 [Caenorhabditis elegan	0.495	0.090	0.547	5.3e-12
ZFIN|ZDB-GENE-080219-39	613	zgc:175280 "zgc:175280" [Danio	0.588	0.102	0.539	6.4e-12
RGD|1305905	463	Slc7a4 "solute carrier family	0.588	0.136	0.523	8.2e-12
UNIPROTKB|E2QU34	629	SLC7A1 "Uncharacterized protei	0.579	0.098	0.548	1.1e-11
UNIPROTKB|F1MUG8	619	SLC7A3 "Uncharacterized protei	0.579	0.100	0.548	1.4e-11

FB|FBgn0036764 CG5535 [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 38/65 (58%), Positives = 53/65 (81%)

Query:    40 KLPLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAV 99
             K PLE ++++ +LA+VL   DLT LG+G+TLGVGVYVLAG V++  AGP+VV+SF IAA+
Sbjct:    28 KKPLEDSNES-KLAKVLSAFDLTALGIGSTLGVGVYVLAGEVSKQYAGPAVVVSFLIAAI 86

Query:   100 TSLFS 104
              S+F+
Sbjct:    87 ASIFA 91

GO:0006865 "amino acid transport" evidence=ISS

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

FB|FBgn0036493 CG7255 [Drosophila melanogaster (taxid:7227)]

 Score = 191 (72.3 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 40/64 (62%), Positives = 50/64 (78%)

Query:    41 LPLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVT 100
             L  + +    +L RVLGL DLT LGVG+TLG GVYVLAG +A++QAGPSV+ISFAIAA+ 
Sbjct:    17 LQADGSEGETKLNRVLGLWDLTALGVGSTLGAGVYVLAGQIAKDQAGPSVMISFAIAALA 76

Query:   101 SLFS 104
             SL +
Sbjct:    77 SLLA 80

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

FB|FBgn0037203 slif "slimfast" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 3.2e-13, P = 3.2e-13
 Identities = 39/54 (72%), Positives = 44/54 (81%)

Query:    51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
             QLARVL L DLT LGVG+TLG+GVYVLAG VA N AGP+V ISF IAA+ S F+
Sbjct:    22 QLARVLNLFDLTALGVGSTLGLGVYVLAGQVAFNIAGPAVTISFLIAAIASAFA 75

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0040007 "growth" evidence=IMP

GO:0006865 "amino acid transport" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IMP

UNIPROTKB|Q5JR49 SLC7A1 "High affinity cationic amino acid transporter 1" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 33/62 (53%), Positives = 46/62 (74%)

Query:    43 LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
             ++ + +  +L+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++VISF IAA+ S+
Sbjct:    19 VDCSREETRLSRCLNTFDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASV 78

Query:   103 FS 104
              +
Sbjct:    79 LA 80

GO:0016020 "membrane" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

UNIPROTKB|Q8WY07 SLC7A3 "Cationic amino acid transporter 3" [Homo sapiens (taxid:9606)]

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 35/62 (56%), Positives = 47/62 (75%)

Query:    43 LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
             LES     +LAR L  +DL  LGVG+TLG GVYVLAG VA+++AGPS+VI F +AA++S+
Sbjct:    19 LESGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSV 78

Query:   103 FS 104
              +
Sbjct:    79 LA 80

GO:0016021 "integral to membrane" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IEA

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=TAS

GO:0006811 "ion transport" evidence=TAS

GO:0006865 "amino acid transport" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

WB|WBGene00015197 B0454.6 [Caenorhabditis elegans (taxid:6239)]

 Score = 162 (62.1 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
 Identities = 29/53 (54%), Positives = 40/53 (75%)

Query:    52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
             L R LGL+D+T L +G  +G G+YVL G+V RNQAGPS++ SFA+A + +L S
Sbjct:    25 LRRCLGLMDITFLALGQMMGAGIYVLTGTVVRNQAGPSIIFSFALAGIAALLS 77

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-080219-39 zgc:175280 "zgc:175280" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query:    42 PLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS 101
             PLE   +     R L  +DL  LGVG+TLG GVYVL+G VAR  +GPS+++SF IAAV S
Sbjct:    18 PLEPDGEESNFKRCLSTLDLVALGVGSTLGAGVYVLSGEVARTVSGPSIIVSFFIAAVAS 77

Query:   102 LFS 104
             +F+
Sbjct:    78 VFA 80

GO:0003333 "amino acid transmembrane transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006865 "amino acid transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

RGD|1305905 Slc7a4 "solute carrier family 7 (orphan transporter), member 4" [Rattus norvegicus (taxid:10116)]

 Score = 168 (64.2 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 33/63 (52%), Positives = 46/63 (73%)

Query:    42 PLESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS 101
             PLE +S    L R L  +DLT+LGVG  +G G+YVL G+VA++ AGP+V++SF +AAV S
Sbjct:    23 PLEESSTETSLRRCLSTLDLTLLGVGGMVGSGLYVLTGTVAKDMAGPAVLLSFLVAAVAS 82

Query:   102 LFS 104
             L +
Sbjct:    83 LLA 85

GO:0015171 "amino acid transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QU34 SLC7A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 169 (64.5 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query:    43 LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
             ++ + +  QL+R L   DL  LGVG+TLG GVYVLAG+VAR  AGP++VISF IAA+ S+
Sbjct:    19 VDCSREESQLSRCLNTFDLVALGVGSTLGAGVYVLAGAVARENAGPAIVISFLIAALASV 78

Query:   103 FS 104
              +
Sbjct:    79 LA 80

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1MUG8 SLC7A3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 34/62 (54%), Positives = 46/62 (74%)

Query:    43 LESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL 102
             LE      +LAR L  +DL  LGVG+TLG GVYVLAG VA+++AGPS+VI F +AA++S+
Sbjct:    19 LEPGMAETRLARCLSTLDLVALGVGSTLGAGVYVLAGEVAKDKAGPSIVICFLVAALSSM 78

Query:   103 FS 104
              +
Sbjct:    79 LA 80

GO:0015326 "cationic amino acid transmembrane transporter activity" evidence=IEA

GO:0015189 "L-lysine transmembrane transporter activity" evidence=IEA

GO:0015181 "arginine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P70423	CTR3_MOUSE	No assigned EC number	0.5483	0.5794	0.1003	yes	N/A
O08812	CTR3_RAT	No assigned EC number	0.5483	0.5794	0.1001	yes	N/A
Q8WY07	CTR3_HUMAN	No assigned EC number	0.5833	0.5607	0.0969	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	107
TIGR00906	557	TIGR00906, 2A0303, cationic amino acid transport p	6e-17
TIGR00909	429	TIGR00909, 2A0306, amino acid transporter	2e-10
COG0833	541	COG0833, LysP, Amino acid transporters [Amino acid	0.001
COG1113	462	COG1113, AnsP, Gamma-aminobutyrate permease and re	0.002
COG0531	466	COG0531, PotE, Amino acid transporters [Amino acid	0.003

>gnl|CDD|129984 TIGR00906, 2A0303, cationic amino acid transport permease

 Score = 74.1 bits (182), Expect = 6e-17
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 51  QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV 105
           ++ R L   DL  LG+G+T+G G+YVL G VARN +GP++V+SF I+ + ++ S 
Sbjct: 25  KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSG 79

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 557

>gnl|CDD|129987 TIGR00909, 2A0306, amino acid transporter

 Score = 55.5 bits (134), Expect = 2e-10
 Identities = 28/53 (52%), Positives = 41/53 (77%), Gaps = 1/53 (1%)

Query: 52  LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
           L+R LGL DLTMLG+GA +G G++V+ G  A  +AGP+V++SF +A +T+LF 
Sbjct: 1   LSRELGLFDLTMLGIGAMIGTGIFVVTGIAA-GKAGPAVILSFVLAGLTALFI 52

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 429

>gnl|CDD|223903 COG0833, LysP, Amino acid transporters [Amino acid transport and metabolism]

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 44  ESASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSL 102
           +      +L R L    L M+ +G  +G G++V +G  A +QAGP  ++I++ I  +   
Sbjct: 34  DETQQGGELKRSLKSRHLQMIAIGGAIGTGLFVGSGK-ALSQAGPAGLLIAYLIIGIMVY 92

Query: 103 FSVQ 106
           F +Q
Sbjct: 93  FVMQ 96

Length = 541

>gnl|CDD|224038 COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 50  PQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 103
             L R L    + ++ +G  +G G+++ +GS     AGPSV++++ IA +    
Sbjct: 9   QGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIA-MAGPSVLLAYLIAGIFVFL 61

Length = 462

>gnl|CDD|223605 COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 3/54 (5%)

Query: 51  QLARVLGLVD-LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 103
           +L + LGL D LT LGVG+ +G G++ L GS A     P+ ++++ IA +  LF
Sbjct: 9   ELKKKLGLFDLLTALGVGSMIGSGIFALPGSAA--GLAPAAILAWLIAGIIILF 60

Length = 466

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	107
TIGR00906	557	2A0303 cationic amino acid transport permease.	99.33
PRK15049	499	L-asparagine permease; Provisional	99.17
PRK10249	458	phenylalanine transporter; Provisional	99.12
PRK10836	489	lysine transporter; Provisional	99.03
PRK11387	471	S-methylmethionine transporter; Provisional	98.97
PRK10746	461	putative transport protein YifK; Provisional	98.96
PRK10238	456	aromatic amino acid transporter; Provisional	98.95
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.94
PRK10580	457	proY putative proline-specific permease; Provision	98.92
KOG1286|consensus	554		98.91
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.85
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.85
COG0833	541	LysP Amino acid transporters [Amino acid transport	98.75
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.67
TIGR00913	478	2A0310 amino acid permease (yeast).	98.62
PRK10655	438	potE putrescine transporter; Provisional	98.6
PRK10644	445	arginine:agmatin antiporter; Provisional	98.6
PRK11021	410	putative transporter; Provisional	98.57
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.56
TIGR00911	501	2A0308 L-type amino acid transporter.	98.55
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.48
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.46
KOG1287|consensus	479		98.35
TIGR00909	429	2A0306 amino acid transporter.	98.27
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.17
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	98.16
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.87
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.79
TIGR00930	953	2a30 K-Cl cotransporter.	97.53
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.49
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.02
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	96.79
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	96.55
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	96.23
PRK15238	496	inner membrane transporter YjeM; Provisional	95.78
KOG1289|consensus	550		94.91
PHA02764	399	hypothetical protein; Provisional	92.97
PRK10483	414	tryptophan permease; Provisional	92.43
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	92.34
PRK09664	415	tryptophan permease TnaB; Provisional	91.77
PF03845	320	Spore_permease: Spore germination protein; InterPr	90.45
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	89.91
PF01235	416	Na_Ala_symp: Sodium:alanine symporter family; Inte	89.26
PRK15132	403	tyrosine transporter TyrP; Provisional	86.72
TIGR00814	397	stp serine transporter. The HAAAP family includes	85.96
COG1115	452	AlsT Na+/alanine symporter [Amino acid transport a	85.95

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=99.33  E-value=2.5e-12  Score=108.49  Aligned_cols=77  Identities=38%  Similarity=0.705  Sum_probs=65.0

Q ss_pred             HHHHHHHhhccccCCCCCchhhhccCCCCCCCCCCCCCCCcC-CCCccccccccChhhHHHhhhcceecchhhHhhHHHH
Q psy6072           4 LRNLYEALSRKKIDVGDDDVSIAEGKNPAGGADGAGKLPLES-ASDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVA   82 (107)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~   82 (107)
                      .+.+.+++.|||+                          ++. +..+++|+|++++++++++++|++||+|||+++|.++
T Consensus         3 ~~~~~~~~~r~k~--------------------------~~~~~~~~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a   56 (557)
T TIGR00906         3 VLTFARCLIRRKI--------------------------VDLDSREESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVA   56 (557)
T ss_pred             hHHHHHHHhccCC--------------------------cccccccccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHH
Confidence            4567888999988                          211 1234569999999999999999999999999999887


Q ss_pred             HhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          83 RNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        83 ~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      .+.+||+++++|+++|+.+++.|+
T Consensus        57 ~~~aGp~~~ls~liagv~~l~~al   80 (557)
T TIGR00906        57 RNDSGPAIVLSFLISGLAAVLSGF   80 (557)
T ss_pred             HhccCcHHHHHHHHHHHHHHHHHH
Confidence            557999999999999999998875

>PRK15049 L-asparagine permease; Provisional

Probab=99.17  E-value=4.5e-11  Score=99.31  Aligned_cols=59  Identities=22%  Similarity=0.553  Sum_probs=53.3

Q ss_pred             CCccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          47 SDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        47 ~~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +.++++||+|+.++++++++|++||+|+|+++|.+++ .+||+.+++|+++++++++.++
T Consensus        21 ~~~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~-~aGp~~il~~li~~i~~~~v~~   79 (499)
T PRK15049         21 AHEEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQ-MAGPALALVYLICGLFSFFILR   79 (499)
T ss_pred             CCchhhhccCCHhHhHHHhhhccccchHHHhhHHHHH-hcCCHHHHHHHHHHHHHHHHHH
Confidence            3455699999999999999999999999999999984 8999889999999999988764

>PRK10249 phenylalanine transporter; Provisional

Probab=99.12  E-value=7.5e-11  Score=96.61  Aligned_cols=57  Identities=23%  Similarity=0.594  Sum_probs=52.5

Q ss_pred             ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +++++|+|+.++++++++|++||+|+|+++|.+++ .+||+++++|+++++++++.++
T Consensus        16 ~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~-~aGp~~~l~~li~~~~~~~~~~   72 (458)
T PRK10249         16 EPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQ-MAGPAVLLGYGVAGIIAFLIMR   72 (458)
T ss_pred             chhhhccCcHhHhhhhhhhcccchhHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHHH
Confidence            34799999999999999999999999999999985 7999999999999999988764

>PRK10836 lysine transporter; Provisional

Probab=99.03  E-value=3.5e-10  Score=93.24  Aligned_cols=58  Identities=33%  Similarity=0.672  Sum_probs=53.1

Q ss_pred             CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      +++++||+|+.++++++++|++||+|||++||.+++ .+|| +++++|+++|+++++.++
T Consensus         9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~-~aGp~~~l~a~~i~g~~~~~~al   67 (489)
T PRK10836          9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATIS-QAGPGGALLSYMLIGLMVYFLMT   67 (489)
T ss_pred             CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHH-hcCCHHHHHHHHHHHHHHHHHHH
Confidence            456799999999999999999999999999999985 7999 589999999999998875

>PRK11387 S-methylmethionine transporter; Provisional

Probab=98.97  E-value=7.3e-10  Score=90.82  Aligned_cols=59  Identities=24%  Similarity=0.522  Sum_probs=53.1

Q ss_pred             CCccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          47 SDAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        47 ~~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      +++.+|||+|+.++++++++|++||+|+|+++|.+++ .+|| +++++|+++++++++.++
T Consensus         7 ~~~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~-~~G~~~~~l~~~i~~~~~~~~~~   66 (471)
T PRK11387          7 QQAGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIS-TTGAAGTLLAYLIGALVVYLVMQ   66 (471)
T ss_pred             CcchhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence            3455799999999999999999999999999999885 7998 799999999999998764

>PRK10746 putative transport protein YifK; Provisional

Probab=98.96  E-value=7.6e-10  Score=91.02  Aligned_cols=58  Identities=33%  Similarity=0.646  Sum_probs=52.5

Q ss_pred             CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      .++++||+|+.+|++++++|++||+|+|++++..++ .+||+++++|+++|+++++.++
T Consensus         4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~-~aGp~~~l~~~i~g~~~~~v~~   61 (461)
T PRK10746          4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLK-WAGPSVLLAYIIAGLFVFFIMR   61 (461)
T ss_pred             CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHH-hcChHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999999999999999999984 7999999999999999887653

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.95  E-value=9.9e-10  Score=89.98  Aligned_cols=57  Identities=26%  Similarity=0.582  Sum_probs=52.5

Q ss_pred             ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      .+++||+|+.++++++++|++||+|+|+++|.+++ .+||+++++|+++++++++.++
T Consensus         7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~-~~Gp~~i~~~~i~gi~~~~v~~   63 (456)
T PRK10238          7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQ-SAGPGIILGYAIAGFIAFLIMR   63 (456)
T ss_pred             chhhhccCcHHHHHHHHhhccccchHHHhhHHHHH-hcCcHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999999985 7999999999999999988764

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.94  E-value=7.4e-10  Score=90.86  Aligned_cols=57  Identities=23%  Similarity=0.532  Sum_probs=51.6

Q ss_pred             ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      ++++||+|++++++++++|++||+|+|+++|..++ .+||+.+++|+++++++++.++
T Consensus        15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~-~aGp~~i~~~~i~~i~~~~~~~   71 (469)
T PRK11049         15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTIS-LAGPSIIFVYMIIGFMLFFVMR   71 (469)
T ss_pred             chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHh-hcCcHHHHHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999999984 7999889999999998877664

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.92  E-value=1.2e-09  Score=89.06  Aligned_cols=58  Identities=22%  Similarity=0.517  Sum_probs=52.9

Q ss_pred             CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +++++||+|+.++++++++|++||+|+|+++|..++ .+||+++++|+++++++++.++
T Consensus         3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~-~aG~~~~l~~~i~~i~~~~~a~   60 (457)
T PRK10580          3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIK-MAGPSVLLAYIIGGVAAYIIMR   60 (457)
T ss_pred             CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHH-HhChHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999999999999999999874 7999999999999999988764

>KOG1286|consensus

Probab=98.91  E-value=5.4e-10  Score=95.37  Aligned_cols=59  Identities=41%  Similarity=0.658  Sum_probs=52.7

Q ss_pred             CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      .++++||+|+.+|++++++|++||+|+|+++|.++.+.+||+++++|+++|+.+++.++
T Consensus        24 ~~~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~   82 (554)
T KOG1286|consen   24 GETELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSAL   82 (554)
T ss_pred             ccchhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHH
Confidence            34689999999999999999999999999999999765556999999999999888764

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.85  E-value=1.6e-09  Score=90.93  Aligned_cols=56  Identities=27%  Similarity=0.555  Sum_probs=51.5

Q ss_pred             CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHH
Q psy6072          48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS  104 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~  104 (107)
                      ++++|+|.|+.+|+.++++|+.||+|+|.++|...+ .|||+++++|+++|+++++.
T Consensus         7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~-~AGPSvlLaY~I~G~~~f~i   62 (462)
T COG1113           7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIA-MAGPSVLLAYLIAGIFVFLI   62 (462)
T ss_pred             cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhh-hhCcHHHHHHHHHHHHHHHH
Confidence            456799999999999999999999999999999985 89999999999999988764

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.85  E-value=3.2e-09  Score=86.27  Aligned_cols=57  Identities=26%  Similarity=0.536  Sum_probs=52.3

Q ss_pred             ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      ..++||+|+.++++++++|++||+|+|++||..++ .+||..+++|+++++++++.++
T Consensus         7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~-~~G~~~~i~~~i~~v~~~~~a~   63 (452)
T TIGR01773         7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIA-SAGPAALLAYLLAGLLVVFIMR   63 (452)
T ss_pred             hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHH-hcCCHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999999885 7999888999999999988765

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=98.75  E-value=5.8e-09  Score=88.99  Aligned_cols=53  Identities=32%  Similarity=0.645  Sum_probs=49.5

Q ss_pred             ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHH
Q psy6072          51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFS  104 (107)
Q Consensus        51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~  104 (107)
                      +|||.|..+|+.++++|++||||+|+++|..+. .+|| +++++|++.|+++++.
T Consensus        41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~-~aGP~g~li~y~i~G~~vy~v   94 (541)
T COG0833          41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALS-QAGPAGLLIAYLIIGIMVYFV   94 (541)
T ss_pred             hhhhhhhHHHHHHHHhccccccceeeecchhhh-ccCcHHHHHHHHHHHHHHHHH
Confidence            599999999999999999999999999999985 7999 8999999999887764

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.67  E-value=2.2e-08  Score=81.36  Aligned_cols=54  Identities=20%  Similarity=0.353  Sum_probs=48.9

Q ss_pred             ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +.+|++++++++++++|+|||+|||.+|+..+  .+||.++++|+++++.+++.++
T Consensus         2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a--~~G~~~i~~wli~~~~~l~~al   55 (435)
T PRK10435          2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLA--SIGSIAIWGWIISIIGAMSLAY   55 (435)
T ss_pred             CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHH
Confidence            35789999999999999999999999999864  4899999999999999988875

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.62  E-value=4.3e-08  Score=80.09  Aligned_cols=53  Identities=26%  Similarity=0.508  Sum_probs=48.7

Q ss_pred             ccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          53 ARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        53 ~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      ||+|+.++++++++|++||+|+|++++.+++ .+|| +++++|+++++++++.++
T Consensus         1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~-~~Gp~~~i~~~~i~~~~~~~~a~   54 (478)
T TIGR00913         1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALA-TGGPAGLLIGYAIMGSIIYCVMQ   54 (478)
T ss_pred             CCCCcHHHHHHHHHhccccchhhhcchhHHH-hcCCHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999999999985 7999 679999999999988764

>PRK10655 potE putrescine transporter; Provisional

Probab=98.60  E-value=5e-08  Score=78.89  Aligned_cols=53  Identities=28%  Similarity=0.454  Sum_probs=48.0

Q ss_pred             cccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      .+|+|++++++++++|++||+|||.+|+...  .+||..+++|+++++++++.++
T Consensus         4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~--~~G~~~~~~w~i~~~~~~~~a~   56 (438)
T PRK10655          4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA--QVGTISILSWLVTAVGSMALAY   56 (438)
T ss_pred             ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH--HhhHHHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999998764  4799889999999999998775

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.60  E-value=5.3e-08  Score=79.15  Aligned_cols=56  Identities=21%  Similarity=0.415  Sum_probs=49.3

Q ss_pred             ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +.+++|++++++++++++|++||+|||++|+.+++  .||..+++|+++++.+++.++
T Consensus         3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al   58 (445)
T PRK10644          3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSM   58 (445)
T ss_pred             CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999999998753  577788999999999988775

>PRK11021 putative transporter; Provisional

Probab=98.57  E-value=6.1e-08  Score=77.87  Aligned_cols=50  Identities=22%  Similarity=0.228  Sum_probs=46.1

Q ss_pred             cChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          56 LGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        56 L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +++|+.+++.+|+|||+|||++||.+++ .+||+++++|+++++++++.++
T Consensus         1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~-~aG~~~~~~~~i~~~~~~~~al   50 (410)
T PRK11021          1 LGLWQGIGLLSTSLLGTGVFAVPALAAL-VAGNNSLWAWPLLILLIFPIAI   50 (410)
T ss_pred             CcHHHHHHHHHHHHHhhHHHHhHHHHHH-hcCchHHHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999874 7999999999999999988775

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.56  E-value=7.8e-08  Score=78.03  Aligned_cols=57  Identities=32%  Similarity=0.580  Sum_probs=50.0

Q ss_pred             ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh--HHHHHHHHHHHHHHHHhc
Q psy6072          49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP--SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp--~~lla~liagl~~ll~Al  106 (107)
                      +++|+|++++++++++++|.+||+|+|..++.++. .+|+  ..+++|+++++++++.++
T Consensus         3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~-~~G~~~~~~l~~li~~v~~l~~al   61 (445)
T PRK11357          3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAK-AAGTPWLTVLAFVIGGLIVIPQMC   61 (445)
T ss_pred             cccccccccHHHHHHHHHHhheechhccchHHHHH-HcCCcHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999998875 4564  488999999999988775

>TIGR00911 2A0308 L-type amino acid transporter

Probab=98.55  E-value=1.2e-07  Score=78.18  Aligned_cols=57  Identities=25%  Similarity=0.423  Sum_probs=50.2

Q ss_pred             ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-H-HHHHHHHHHHHHHHHhc
Q psy6072          49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-S-VVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~-~lla~liagl~~ll~Al  106 (107)
                      +++++|++++++++++++|++||+|+|.+++.+++ .+|| + .+++|+++++++++.++
T Consensus        37 ~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~-~~G~~g~~~~~~ii~~i~~~~~al   95 (501)
T TIGR00911        37 AVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLK-NAGSVGLALIMWAVCGIFSIVGAL   95 (501)
T ss_pred             ccccCccccHhHhhHhheeceEEeeEeecHHHHHh-hCCChHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999999999999999885 6887 3 56899999998888775

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.48  E-value=1.6e-07  Score=77.07  Aligned_cols=52  Identities=35%  Similarity=0.510  Sum_probs=47.3

Q ss_pred             cccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          54 RVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        54 r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      |++++++++++++|++||+|||.+|+.+++ .+|| +.+++|+++++.+++.++
T Consensus         1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~-~ag~~~~l~~w~i~~~~~~~~al   53 (468)
T TIGR03810         1 KKLGLGALTALVVGSMIGSGIFSLPSDMAA-GAAAGAVLIGWVITGVGMLALAF   53 (468)
T ss_pred             CCCCHHHHHHHHHHhHHhhHHHHhHHHHHH-hhchHHHHHHHHHHHHHHHHHHH
Confidence            679999999999999999999999999874 7899 588999999999988775

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.46  E-value=1.9e-07  Score=76.65  Aligned_cols=54  Identities=35%  Similarity=0.591  Sum_probs=48.7

Q ss_pred             cccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      .+|++++++++++++|++||+|+|..|+.++ +.+|| ..+++|+++++++++.++
T Consensus         5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~-~~~g~~~~~~~wli~~~~~~~~al   59 (473)
T TIGR00905         5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLA-SVAGPGAVIIGWIITGVGMLALAF   59 (473)
T ss_pred             cCCCccHHHHHHHHHHHHHhHHHHHhHHHHH-HhcchHHHHHHHHHHHHHHHHHHH
Confidence            4889999999999999999999999999887 47888 578999999999888765

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>KOG1287|consensus

Probab=98.35  E-value=2.2e-07  Score=78.55  Aligned_cols=58  Identities=24%  Similarity=0.430  Sum_probs=53.0

Q ss_pred             CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh--HHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP--SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp--~~lla~liagl~~ll~Al  106 (107)
                      ++.+++|+++++..+.+.+|.+||+|||++|..+.+ .+||  .+++-|+++|++++..|+
T Consensus         6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~-~~gsvg~sL~iWv~~gi~s~~gal   65 (479)
T KOG1287|consen    6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLA-NTGSVGLSLIIWVFCGIISIIGAL   65 (479)
T ss_pred             ccccccceeeeecceeEEEEeeEecccccCcHHHHH-cCCchhHHHHHHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999985 7888  688889999999999886

>TIGR00909 2A0306 amino acid transporter

Probab=98.27  E-value=1.2e-06  Score=70.39  Aligned_cols=54  Identities=52%  Similarity=0.944  Sum_probs=49.1

Q ss_pred             cccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      |+|+++.++.+++.++.+||+|+|.+++.+.. .+||..+++|+++++.+++.++
T Consensus         1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~-~~G~~~~l~~li~~~~~~~~a~   54 (429)
T TIGR00909         1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAG-KAGPAVILSFVLAGLTALFIAL   54 (429)
T ss_pred             CCccccHHHHHHHHHhhhhcchHHHhHHHHHH-HcCCHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999874 6899888999999999887764

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.17  E-value=1.4e-06  Score=71.30  Aligned_cols=43  Identities=21%  Similarity=0.530  Sum_probs=38.9

Q ss_pred             HhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          63 MLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        63 ~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      ++++|++||+|+|+++|..++ .+||+++++|+++|+++++.++
T Consensus         1 ~~~ig~~IGsGif~~~g~~~~-~aG~~~ll~~~i~gi~~~~~al   43 (446)
T PRK10197          1 MLSIAGVIGASLFVGSSVAIA-EAGPAVLLAYLFAGLLVVMIMR   43 (446)
T ss_pred             CeeecchhHhHHHHHhHHHHH-hcChHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999885 7999999999999999998775

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=98.16  E-value=2.2e-06  Score=70.46  Aligned_cols=58  Identities=22%  Similarity=0.266  Sum_probs=52.9

Q ss_pred             CccccccccChhhHHHhhhcce-ecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVDLTMLGVGAT-LGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~-IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      .+++|||+++.++...++++.+ +++|+|.+++..+. .+||+++++|+++++.+++.|+
T Consensus         7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~-~~Gp~~~~~~li~~i~~l~~al   65 (475)
T TIGR03428         7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYG-FGGPAFFWTWPVVFVGQLLVAL   65 (475)
T ss_pred             CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcHHHHHHHHHHHHHHHHHH
Confidence            4677999999999999999985 99999999999984 7999999999999999998875

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00908 2A0305 ethanolamine permease

Probab=97.87  E-value=1.5e-05  Score=64.53  Aligned_cols=56  Identities=25%  Similarity=0.186  Sum_probs=47.2

Q ss_pred             ccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          49 APQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        49 ~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      ++++||++++++.+++++|++|| |.|+..+..++ .+|| +.+++|+++++++++.++
T Consensus         2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~-~~G~~~~~~~~~i~~~~~~~~a~   58 (442)
T TIGR00908         2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLA-QGGWGGFVVATLLVATMYLTFCF   58 (442)
T ss_pred             CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHH-HhCcHHHHHHHHHHHHHHHHHHH
Confidence            45699999999999999999998 88888776664 6899 688999999988777653

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.79  E-value=2.5e-05  Score=64.06  Aligned_cols=58  Identities=19%  Similarity=0.198  Sum_probs=49.0

Q ss_pred             CccccccccChhhHHHhhhcce-ecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~-IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      .+++|||+++.++.++++++.+ +.+|+|.+.+..++ .+|| +++++|+++++++++.++
T Consensus         6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~Gp~~~i~~~~i~gi~~l~~~~   65 (482)
T TIGR00907         6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLS-SGGAMSIVWGWIIAGAGSICIAL   65 (482)
T ss_pred             CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhh-cCCccchhHHHHHHHHHHHHHHH
Confidence            4567999999999999999954 23899999887764 7899 789999999999998764

>TIGR00930 2a30 K-Cl cotransporter

Probab=97.53  E-value=8.1e-05  Score=67.33  Aligned_cols=55  Identities=15%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             ccccccChhhHHHhh-hcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          51 QLARVLGLVDLTMLG-VGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        51 ~L~r~L~~~~l~~l~-vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      .-++++|++..+++- ++.|+|+|+|+.++.++. .+|+ .++++|+++++++++.++
T Consensus        73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg-~aG~~~sll~~~la~~vtlltaL  129 (953)
T TIGR00930        73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVG-QAGIGLSLLIILLCCCVTTITGL  129 (953)
T ss_pred             CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999 999999999999999985 7898 588999999999999876

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.49  E-value=6e-05  Score=59.41  Aligned_cols=51  Identities=22%  Similarity=0.312  Sum_probs=45.5

Q ss_pred             ccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          55 VLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        55 ~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +++.++.+++.++.+||+|++..|+..+ +.+|+.++++++++++.+++.++
T Consensus         2 ~is~~q~~~l~~~~~iG~gil~~P~~~~-~~a~~~~wi~~ll~~~~~~~~~~   52 (359)
T TIGR00912         2 KISSKQLIFLISSTMIGSGLLTLPALVS-QSAGQDGWISIILGGLIIIFLLC   52 (359)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHhhhHHHH-hccCCCeeHHHHHHHHHHHHHHH
Confidence            5889999999999999999999999887 47888888999999998887664

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.02  E-value=0.001  Score=53.13  Aligned_cols=57  Identities=40%  Similarity=0.719  Sum_probs=47.5

Q ss_pred             CccccccccChhh-HHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVD-LTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~-l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      .+++++|+++.++ +..+.++.++|.|+|..++..+. .+ |...++|++++++.++.++
T Consensus         6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~-~~-~~~~~~~li~~~~~~~~a~   63 (466)
T COG0531           6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAG-LA-PAAILAWLIAGIIILFLAL   63 (466)
T ss_pred             cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHH-hc-hHHHHHHHHHHHHHHHHHH
Confidence            4567899999999 99999999999999999998763 34 7666669999988887754

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=96.79  E-value=0.0012  Score=52.68  Aligned_cols=48  Identities=33%  Similarity=0.553  Sum_probs=40.0

Q ss_pred             cChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHH-HHHhc
Q psy6072          56 LGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVQ  106 (107)
Q Consensus        56 L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~-ll~Al  106 (107)
                      |++++..++++|.++|+|+|..+  .+ ..+||..+++|++++++. ++.++
T Consensus         1 l~~~~~~~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~   49 (426)
T PF13520_consen    1 LGLFSAIALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIAL   49 (426)
T ss_dssp             B-HHHHHHHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHH
Confidence            58899999999999999999988  34 468999999999999887 55543

...

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.55  E-value=0.00068  Score=55.57  Aligned_cols=46  Identities=24%  Similarity=0.550  Sum_probs=40.0

Q ss_pred             hHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          60 DLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        60 ~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      |++++++|+++|+|+|+..+.++. .+|| +.+++|+++++++++.+.
T Consensus         1 hv~~~~ig~~ig~g~f~~~g~~~~-~~G~~~~~la~li~~i~~~~~~~   47 (478)
T PF00324_consen    1 HVFMISIGGIIGTGLFLGSGFAIA-AAGPGGAPLAYLIAGIIVLLVAL   47 (478)
T ss_pred             CEEEeeHHHHHHHHHHHHHHHHHH-hcccccchhHhHHHHHHHHhhhh
Confidence            356788999999999999999885 7999 889999999999988763

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>TIGR00837 araaP aromatic amino acid transport protein

Probab=96.23  E-value=0.0023  Score=50.86  Aligned_cols=44  Identities=20%  Similarity=0.175  Sum_probs=31.3

Q ss_pred             HHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          62 TMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        62 ~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +++++|++||+|+|.+|+..+ ..+++..++.++++++++.+.++
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a-~~g~~~~~~~~i~~~~~~~~~~l   46 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTA-GAWFIWTLLLLILLWFLMLHSGL   46 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999876 34555555555666666655543

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=95.78  E-value=0.011  Score=49.12  Aligned_cols=51  Identities=14%  Similarity=0.144  Sum_probs=38.7

Q ss_pred             cccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHH-HHHhc
Q psy6072          52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTS-LFSVQ  106 (107)
Q Consensus        52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~-ll~Al  106 (107)
                      ++|+|+++++++++++++||.+.  .|.. .+ .+||+.++.|++++++. ++.|+
T Consensus         5 ~~~~l~~~~l~~~~~~~vig~~~--~~~~-~~-~~G~~~i~~~~i~~~~~~l~~al   56 (496)
T PRK15238          5 TKKKLSLIGLILMIFTSVFGFAN--SPRA-FY-LMGYSAIPWYILSAILFFIPFAL   56 (496)
T ss_pred             ccCeeeHHHHHHHHHHHHHhCCc--hHHH-HH-HcChHHHHHHHHHHHHHHHHHHH
Confidence            47889999999999999999763  2332 32 58998888999888764 44543

>KOG1289|consensus

Probab=94.91  E-value=0.015  Score=50.40  Aligned_cols=59  Identities=19%  Similarity=0.212  Sum_probs=42.7

Q ss_pred             CCccccccccChhhHHHhhhcce-ecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          47 SDAPQLARVLGLVDLTMLGVGAT-LGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        47 ~~~~~L~r~L~~~~l~~l~vG~~-IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      .-++++||++++|....++++.+ .=.|+-.+-...+ ..+|| .++.+|+|+++..+|.|+
T Consensus        41 gYkqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl-~~gG~~~~vwgwlIa~~~~i~va~  101 (550)
T KOG1289|consen   41 GYKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGL-GSGGPPTLVWGWLIAGFFSICVAL  101 (550)
T ss_pred             CCchhhhhhhhHHHHHHHHHHHhcchhhhhhheeecc-ccCChHHHHHHHHHHHHHHHHHHh
Confidence            36789999999999998888753 1134433322233 24666 899999999999999875

>PHA02764 hypothetical protein; Provisional

Probab=92.97  E-value=0.19  Score=41.83  Aligned_cols=59  Identities=8%  Similarity=0.028  Sum_probs=41.8

Q ss_pred             CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      +.++|-|+.+++|..++-++.+-+...+.-+--......|+.++++|+++|+++++.++
T Consensus         6 eSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL   64 (399)
T PHA02764          6 KSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLL   64 (399)
T ss_pred             hcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Confidence            46789999999999999888765433222122222112456789999999999999876

>PRK10483 tryptophan permease; Provisional

Probab=92.43  E-value=0.21  Score=41.82  Aligned_cols=54  Identities=15%  Similarity=0.091  Sum_probs=37.9

Q ss_pred             ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      ..|+..+.+..+++..|++||+|++-.|-..+  .+|- .+++..+++-+.+..+|+
T Consensus         6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a--~~GF~~s~~~l~~~W~~M~~taL   60 (414)
T PRK10483          6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMS--GAWFFWSMAALIFTWFCMLHSGL   60 (414)
T ss_pred             cccCCCcHHHHHHHHHHchHhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHH
Confidence            35778899999999999999999999986543  4664 444444444444444443

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=92.34  E-value=0.21  Score=41.01  Aligned_cols=49  Identities=24%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             ccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHh
Q psy6072          55 VLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSV  105 (107)
Q Consensus        55 ~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~A  105 (107)
                      +-+.+..+++.+|++||+|++.+|-...  .+|. ..++..+++..++...+
T Consensus         2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~--~~Gf~~~~~~l~~~w~~~~~s~   51 (394)
T PF03222_consen    2 NNSILGGVLLIAGTAIGAGMLALPIATA--GAGFLPSLILLLIAWPLMYYSG   51 (394)
T ss_pred             CchHHHHHHHHHHccHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHH
Confidence            3467888999999999999999997653  4775 44444444444444443

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=91.77  E-value=0.25  Score=41.43  Aligned_cols=48  Identities=23%  Similarity=0.110  Sum_probs=33.4

Q ss_pred             ChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHhc
Q psy6072          57 GLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        57 ~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~Al  106 (107)
                      +.+..+++..|++||+|++-.|-..+  .+|- .+++..+++-+.+..+|+
T Consensus        10 ~~~gg~~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~L   58 (415)
T PRK09664         10 SAFWGVMVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGL   58 (415)
T ss_pred             chhhhhHHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHH
Confidence            66779999999999999999986543  4674 444444444445555444

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=90.45  E-value=0.28  Score=38.32  Aligned_cols=49  Identities=24%  Similarity=0.383  Sum_probs=39.3

Q ss_pred             ccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHh
Q psy6072          55 VLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSV  105 (107)
Q Consensus        55 ~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~A  105 (107)
                      +++.++...+.+..++|+|++..|+..++ .+| .++++.+++++.++..+
T Consensus         1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~-~~~-d~Wi~~ll~~~~~l~~~   49 (320)
T PF03845_consen    1 KISPRQLFFLLISSIIGTGILFLPAILAE-QAG-DAWISVLLGGLIGLLLA   49 (320)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHH-HcC-CcHHHHHHHHHHHHHHH
Confidence            47889999999999999999999999875 566 66667777766665544

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=89.91  E-value=0.5  Score=39.04  Aligned_cols=53  Identities=17%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHHHHHHHh
Q psy6072          51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAVTSLFSV  105 (107)
Q Consensus        51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl~~ll~A  105 (107)
                      ..++.-+....+++.+|++||+|++..|-..  ..+|- ..++..++++..+.++.
T Consensus         4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~--~~~G~~~~l~~l~i~~~~t~~s~   57 (415)
T COG0814           4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAF--GGGGFWPGLLLLIIAWPLTYLSL   57 (415)
T ss_pred             cccCCcchHHHHHHHHccccccchhhhhHHh--cCCcHHHHHHHHHHHHHHHHHHH
Confidence            3466678889999999999999999999653  35776 45555666666665554

>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups

Probab=89.26  E-value=0.85  Score=38.35  Aligned_cols=46  Identities=13%  Similarity=0.187  Sum_probs=37.0

Q ss_pred             ccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHHH
Q psy6072          53 ARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAAV   99 (107)
Q Consensus        53 ~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liagl   99 (107)
                      ++.++.++..+.++++.||+|=..+....+ ..+|| ++++-|+.+-+
T Consensus        16 ~g~iS~fqA~~~ala~~vG~GNI~GVa~AI-~~GGPGAiFWMWi~a~~   62 (416)
T PF01235_consen   16 EGGISPFQALCTALAGTVGTGNIAGVATAI-AIGGPGAIFWMWISALL   62 (416)
T ss_pred             CCCcChHHHHHHHHHhccCcchHHHHHHHH-HhhchhHHHHHHHHHHH
Confidence            458999999999999999999999988777 48999 45555555433

One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=86.72  E-value=0.95  Score=37.58  Aligned_cols=30  Identities=20%  Similarity=0.333  Sum_probs=24.8

Q ss_pred             ChhhHHHhhhcceecchhhHhhHHHHHhhhCh
Q psy6072          57 GLVDLTMLGVGATLGVGVYVLAGSVARNQAGP   88 (107)
Q Consensus        57 ~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp   88 (107)
                      +.+..+++..|++||+|++.+|-...  .+|.
T Consensus         4 ~~~g~~~li~GTaIGAGmLaLPi~~~--~~Gf   33 (403)
T PRK15132          4 RTLGSIFIVAGTTIGAGMLAMPLAAA--GVGF   33 (403)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHH--hChH
Confidence            56778899999999999999997543  4775

>TIGR00814 stp serine transporter

Probab=85.96  E-value=0.56  Score=38.71  Aligned_cols=39  Identities=18%  Similarity=0.224  Sum_probs=26.2

Q ss_pred             hHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHH
Q psy6072          60 DLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF  103 (107)
Q Consensus        60 ~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll  103 (107)
                      ..+...+|.+||+|++.+|...     |+..+++|+++++++..
T Consensus         7 ~w~~~l~gt~IGaGiL~LP~~a-----g~~G~i~~li~~l~~~p   45 (397)
T TIGR00814         7 GWMLGLYGTAIGAGVLFLPIQA-----GLGGLWVLVLMAIIAYP   45 (397)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHH-----HhCHHHHHHHHHHHHHH
Confidence            4466778999999999999853     23335555555554443

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]

Probab=85.95  E-value=2.6  Score=36.09  Aligned_cols=47  Identities=17%  Similarity=0.198  Sum_probs=38.2

Q ss_pred             ccccccChhhHHHhhhcceecchhhHhhHHHHHhhhCh-HHHHHHHHHH
Q psy6072          51 QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGP-SVVISFAIAA   98 (107)
Q Consensus        51 ~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp-~~lla~liag   98 (107)
                      +-++.+++++..+.++++.||+|=..+....+ ..+|| ++++=|+++-
T Consensus        58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI-~~GGPGAvFWMWi~Al  105 (452)
T COG1115          58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAI-ALGGPGAVFWMWIVAL  105 (452)
T ss_pred             CCCCCcChHHHHHHHHHhccCcchHHHHHHHH-HcCCCccHHHHHHHHH
Confidence            44678899999999999999999999888776 48999 5666666543

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	107
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	3e-14
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	2e-09
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	3e-08

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Length = 444

 Score = 65.8 bits (161), Expect = 3e-14
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 51  QLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFS 104
              + L L +   + VG  +G  ++ + G  A   AG ++  +F ++ + +L  
Sbjct: 3   LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLV 55

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Length = 445

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 13/56 (23%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 48  DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLF 103
            +   A  +GL+ +T++  GA +G GV++L  ++A    G   +  + +  + +L 
Sbjct: 2   SSDADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALG 55

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Length = 511

 Score = 48.7 bits (116), Expect = 3e-08
 Identities = 11/58 (18%), Positives = 18/58 (31%)

Query: 50  PQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQL 107
               +      LT+LG  A     V  +        +G S+V    +  +     V L
Sbjct: 2   ATSVQTGKAKQLTLLGFFAITASMVMAVYEYPTFATSGFSLVFFLLLGGILWFIPVGL 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	107
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.55
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.42
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	96.8

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.55  E-value=5.6e-08  Score=75.80  Aligned_cols=55  Identities=24%  Similarity=0.428  Sum_probs=47.4

Q ss_pred             cccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          50 PQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        50 ~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      ++.+|+++.++++++++|++||+|+|..|+.+.  .+||.++++|+++++++++.++
T Consensus         4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~--~~G~~~~~~~li~~~~~~~~a~   58 (445)
T 3l1l_A            4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA--STGGIAIYGWLVTIIGALGLSM   58 (445)
T ss_dssp             ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH--HHCTHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH--HhhhHHHHHHHHHHHHHHHHHH
Confidence            457899999999999999999999999998754  5899889999999999988764

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.42  E-value=1.2e-07  Score=74.18  Aligned_cols=54  Identities=20%  Similarity=0.388  Sum_probs=49.6

Q ss_pred             cccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHHHHhc
Q psy6072          52 LARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSLFSVQ  106 (107)
Q Consensus        52 L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~ll~Al  106 (107)
                      .||+++.++++++++|++||+|+|..++..+ ..+||+++++|+++++++++.++
T Consensus         4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~   57 (444)
T 3gia_A            4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAY   57 (444)
T ss_dssp             CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999887 47999999999999999988764

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=96.80  E-value=0.0012  Score=52.19  Aligned_cols=50  Identities=16%  Similarity=0.206  Sum_probs=34.6

Q ss_pred             CccccccccChhhHHHhhhcceecchhhHhhHHHHHhhhChHHHHHHHHHHHHHH
Q psy6072          48 DAPQLARVLGLVDLTMLGVGATLGVGVYVLAGSVARNQAGPSVVISFAIAAVTSL  102 (107)
Q Consensus        48 ~~~~L~r~L~~~~l~~l~vG~~IGaGIFv~~g~v~~~~aGp~~lla~liagl~~l  102 (107)
                      ++++++|+++.+++++++++.++|  ++..++  . ..+||+.++.|++++++.+
T Consensus         5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~-~~~G~~~~~~~~i~~~~~~   54 (511)
T 4djk_A            5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--F-ATSGFSLVFFLLLGGILWF   54 (511)
T ss_dssp             -------CCCHHHHHHHTGGGGCC--GGGHHH--H-HTTTTHHHHHHHHHHHHTH
T ss_pred             ccCccCccccHHHHHHHHHHHHHh--hchhHH--H-HhhHHHHHHHHHHHHHHHH
Confidence            456789999999999999999996  555554  2 3689988888888887654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00