Psyllid ID: psy6173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MKMSGPRSESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEEEEEccccEEEEEccccEEEEEEEcccccccEEEEEEEEEEcccccccEEcccccccccccccccccccccccccccccccccEEEEEcccHHEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEcccccccccccEEEEEEEEEccccEEEEEEcccEEEEEEEccccccccEEEEEEEEEEEcccccEEccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHccccccc
Coil and Loop (DISEMBL)
mkmsgprseslnlnvgcfdpysddprlavkkicfcpvtgtlliaGTAGHVILAKLSTKTSTDVTVKISTmnivsdrdsfvwkgharlgvkhtdskdkepskallksvspgfqptclvqlhppaaVTSLVLHTEWGEY
Flexible Loop (DISEMBL)
mkmsgprseslnlnvgcfdpYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKlstktstdvtvkistmnivsdrdsfvWKGHARlgvkhtdskdkepSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Low Complexity Region (SEG)
MKMSGPRSESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Disordered region (IsUnstruct)
************LNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGV********************GFQPTCLVQLHPPAAVTSLVLHTEW***
Disordered Region (DISOPRED)
***************GCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKIS****************************************PGFQPTCLVQLHPPAAVTSLVLHTEWG**
Disordered Region (DISEMBL)
**********LNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGV**************LKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Disordered Region (DISPRO)
********ESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMSGPRSESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q08470	1166	Protein lethal(2) giant l	yes	N/A	0.839	0.098	0.458	5e-27
P08111	1161	Lethal(2) giant larvae pr	yes	N/A	0.832	0.098	0.458	9e-25
Q80Y17	1036	Lethal(2) giant larvae pr	yes	N/A	0.795	0.105	0.438	3e-24
Q8MKF0	1036	Lethal(2) giant larvae pr	no	N/A	0.795	0.105	0.438	3e-24
Q15334	1064	Lethal(2) giant larvae pr	yes	N/A	0.795	0.102	0.454	3e-24
Q7SZE3	1020	Lethal(2) giant larvae pr	yes	N/A	0.788	0.105	0.433	5e-24
Q8K4K5	1036	Lethal(2) giant larvae pr	yes	N/A	0.795	0.105	0.454	7e-24
Q6P1M3	1020	Lethal(2) giant larvae pr	no	N/A	0.788	0.105	0.416	1e-22
Q3TJ91	1027	Lethal(2) giant larvae pr	no	N/A	0.788	0.105	0.416	2e-22
Q5RCX2	1019	Lethal(2) giant larvae pr	no	N/A	0.788	0.105	0.416	3e-22

>sp|Q08470|L2GL_DROPS Protein lethal(2) giant larvae OS=Drosophila pseudoobscura pseudoobscura GN=l(2)gl PE=1 SV=3

 Score =  119 bits (299), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 75/120 (62%), Gaps = 5/120 (4%)

Query: 16  GCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSD 75
           G FDPYSDDPRLAVKKI FCP TG L++ GTAG +++A   T      ++K ++MN+VSD
Sbjct: 499 GLFDPYSDDPRLAVKKIAFCPKTGQLVVGGTAGQIVIADFDTAAEDQSSLKYNSMNLVSD 558

Query: 76  RDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 135
           RD FVWKGH +L V+    +D       +     G   T ++Q+ PPA++T + L   WG
Sbjct: 559 RDGFVWKGHDQLNVRANLLEDNA-----VPLTENGVNITGVLQVLPPASITCMALEANWG 613

Essential for the development of polarized epithelia and for cell polarity associated with asymmetric cell division of neuroblasts during development. Could act as a tumor suppressor.
Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|P08111|L2GL_DROME Lethal(2) giant larvae protein OS=Drosophila melanogaster GN=l(2)gl PE=1 SV=2

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 77/120 (64%), Gaps = 6/120 (5%)

Query: 16  GCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSD 75
           G FDPYSDDPRLAVKKI FCP TG L++ GTAG +++A         V++K  +MN+VSD
Sbjct: 499 GLFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADF-IDLPEKVSLKYISMNLVSD 557

Query: 76  RDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 135
           RD FVWKGH +L V+ ++  D E     + +   G   + ++Q+ PPA++T + L   WG
Sbjct: 558 RDGFVWKGHDQLNVR-SNLLDGEA----IPTTERGVNISGVLQVLPPASITCMALEASWG 612

Essential for the development of polarized epithelia and for cell polarity associated with asymmetric cell division of neuroblasts during development. Isoform p78 has an essential role in control of cell proliferation and differentiation during development and could act as tumor suppressor. Isoform p217 has an accessory function in this respect.

Drosophila melanogaster (taxid: 7227)

>sp|Q80Y17|L2GL1_MOUSE Lethal(2) giant larvae protein homolog 1 OS=Mus musculus GN=Llgl1 PE=1 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 12/121 (9%)

Query: 14  NVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIV 73
            VGCFDPYSDDPRL ++K+  C  T  +++AGTAG V++ +LS +   +  V ++ ++++
Sbjct: 501 KVGCFDPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELS-EVPAEHAVSVANVDLL 559

Query: 74  SDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTE 133
            DR+ F WKGH RL           P   LL   + GFQP  L+Q  PPAAVT++ LH E
Sbjct: 560 QDREGFTWKGHERL----------NPHTGLLPWPA-GFQPRMLIQCLPPAAVTAVTLHAE 608

Query: 134 W 134
           W
Sbjct: 609 W 609

Cortical cytoskeleton protein found in a complex involved in maintaining cell polarity and epithelial integrity. Involved in the regulation of mitotic spindle orientation, proliferation, differentiation and tissue organization of neuroepithelial cells.

Mus musculus (taxid: 10090)

>sp|Q8MKF0|L2GL1_BOVIN Lethal(2) giant larvae protein homolog 1 OS=Bos taurus GN=LLGL1 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 12/121 (9%)

Query: 14  NVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIV 73
            VGCFDPYSDDPRL ++K+  C  T  +++AGTAG V++ +LS +   +  V ++ ++++
Sbjct: 501 KVGCFDPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELS-EVPAEHAVSVANVDLL 559

Query: 74  SDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTE 133
            DR+ F WKGH RL           P   LL   + GFQP  L+Q  PPAAVT++ LH E
Sbjct: 560 QDREGFTWKGHERL----------NPHTGLLPWPA-GFQPRMLIQCLPPAAVTAVTLHAE 608

Query: 134 W 134
           W
Sbjct: 609 W 609

Cortical cytoskeleton protein found in a complex involved in maintaining cell polarity and epithelial integrity. Involved in the regulation of mitotic spindle orientation, proliferation, differentiation and tissue organization of neuroepithelial cells.

Bos taurus (taxid: 9913)

>sp|Q15334|L2GL1_HUMAN Lethal(2) giant larvae protein homolog 1 OS=Homo sapiens GN=LLGL1 PE=1 SV=3

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 74/121 (61%), Gaps = 12/121 (9%)

Query: 14  NVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIV 73
            VGCFDPYSDDPRL V+K+  C  T  +++AGTAG V++ +LS     +  V ++ ++++
Sbjct: 502 KVGCFDPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELS-DVPVEQAVSVAIIDLL 560

Query: 74  SDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTE 133
            DR+ F WKGH RL           P    L   + GFQP  LVQ  PPAAVT++ LHTE
Sbjct: 561 QDREGFTWKGHERL----------SPRTGPLPWPA-GFQPRVLVQCLPPAAVTAVTLHTE 609

Query: 134 W 134
           W
Sbjct: 610 W 610

Cortical cytoskeleton protein found in a complex involved in maintaining cell polarity and epithelial integrity. Involved in the regulation of mitotic spindle orientation, proliferation, differentiation and tissue organization of neuroepithelial cells.

Homo sapiens (taxid: 9606)

>sp|Q7SZE3|L2GL2_DANRE Lethal(2) giant larvae protein homolog 2 OS=Danio rerio GN=llgl2 PE=1 SV=1

 Score =  109 bits (273), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 77/120 (64%), Gaps = 12/120 (10%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VGCFDPYSDDPRL ++KI  C  +G L +AGTAG +++ +L+ + +  + V+ + ++++ 
Sbjct: 491 VGCFDPYSDDPRLGIQKIHLCKYSGYLTVAGTAGQILVLELNDEAAEQM-VEATVVDLLQ 549

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
            ++ F WKG ARL V+      +EP         PGFQP  LVQ  PPA VT++ LH+EW
Sbjct: 550 GQEGFRWKGQARLDVR------EEPVL-----FPPGFQPFALVQCQPPAVVTAIALHSEW 598

Essential for hemidesmosome formation and maintenance of the cytoskeleton elements as well as cellular morphology in the basal epidermis during development. Also involved in regulating growth of the basal epidermis.

Danio rerio (taxid: 7955)

>sp|Q8K4K5|L2GL1_RAT Lethal(2) giant larvae protein homolog 1 OS=Rattus norvegicus GN=Llgl1 PE=1 SV=1

 Score =  108 bits (271), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 55/121 (45%), Positives = 76/121 (62%), Gaps = 12/121 (9%)

Query: 14  NVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIV 73
            VGCFDPYSDDPRL ++K+  C  T  +++AGTAG V++ +LS     + TV +++++++
Sbjct: 501 KVGCFDPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELS-DVPGEHTVSVASVDLL 559

Query: 74  SDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTE 133
            DR+ F WKGH RL   HT      P  A       GFQP  L+Q  PPAAVT++ LH E
Sbjct: 560 QDREGFTWKGHERLS-PHTGPL---PWPA-------GFQPRVLIQCLPPAAVTAVALHAE 608

Query: 134 W 134
           W
Sbjct: 609 W 609

Cortical cytoskeleton protein found in a complex involved in maintaining cell polarity and epithelial integrity. Involved in the regulation of mitotic spindle orientation, proliferation, differentiation and tissue organization of neuroepithelial cells.

Rattus norvegicus (taxid: 10116)

>sp|Q6P1M3|L2GL2_HUMAN Lethal(2) giant larvae protein homolog 2 OS=Homo sapiens GN=LLGL2 PE=1 SV=2

 Score =  104 bits (260), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/120 (41%), Positives = 71/120 (59%), Gaps = 12/120 (10%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRL ++KI  C  +G L +AGTAG V++ +L+ + +     ++   +++ 
Sbjct: 493 VGSFDPYSDDPRLGIQKIFLCKYSGYLAVAGTAGQVLVLELNDEAAEQAVEQVEA-DLLQ 551

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           D++ + WKGH RL  +    +             PGFQP  LVQ  PPA VTSL LH+EW
Sbjct: 552 DQEGYRWKGHERLAARSGPVR-----------FEPGFQPFVLVQCQPPAVVTSLALHSEW 600

Part of a complex with GPSM2/LGN, PRKCI/aPKC and PARD6B/Par-6, which may ensure the correct organization and orientation of bipolar spindles for normal cell division. This complex plays roles in the initial phase of the establishment of epithelial cell polarity.

Homo sapiens (taxid: 9606)

>sp|Q3TJ91|L2GL2_MOUSE Lethal(2) giant larvae protein homolog 2 OS=Mus musculus GN=Llgl2 PE=2 SV=2

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/120 (41%), Positives = 72/120 (60%), Gaps = 12/120 (10%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRL ++KI  C  +G L +AGTAG V++ +L+ + +     ++   +++ 
Sbjct: 493 VGSFDPYSDDPRLGIQKIFLCKYSGYLAVAGTAGQVLVLELNDEAAEHAVEQVEA-DLLQ 551

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           D++ + WKGH RL  +        P     ++   GFQP  LVQ  PPA VTSL LH+EW
Sbjct: 552 DQEGYRWKGHERLAAR--------PGPVCFEA---GFQPFVLVQCQPPAVVTSLALHSEW 600

Part of a complex with GPSM2/LGN, PRKCI/aPKC and PARD6B/Par-6, which may ensure the correct organization and orientation of bipolar spindles for normal cell division. This complex plays roles in the initial phase of the establishment of epithelial cell polarity.

Mus musculus (taxid: 10090)

>sp|Q5RCX2|L2GL2_PONAB Lethal(2) giant larvae protein homolog 2 OS=Pongo abelii GN=LLGL2 PE=2 SV=1

 Score =  103 bits (257), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/120 (41%), Positives = 70/120 (58%), Gaps = 12/120 (10%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRL ++KI  C  +G L +AGTAG V++ +L+ + +     ++   +++ 
Sbjct: 493 VGSFDPYSDDPRLGIQKIFLCKYSGYLAVAGTAGQVLVLELNDEAAEQAVEQVEA-DLLQ 551

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           D++ + WKGH RL       +             PGFQP  LVQ  PPA VTSL LH+EW
Sbjct: 552 DQEGYRWKGHERLAAHSGPVR-----------FEPGFQPFVLVQCQPPAVVTSLALHSEW 600

Part of a complex with GPSM2/LGN, PRKCI/aPKC and PARD6B/Par-6, which may ensure the correct organization and orientation of bipolar spindles for normal cell division. This complex plays roles in the initial phase of the establishment of epithelial cell polarity.

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
345487878	1181	PREDICTED: protein lethal(2) giant larva	0.795	0.092	0.561	3e-32
270012677	1105	hypothetical protein TcasGA2_TC015986 [T	0.795	0.098	0.537	5e-31
91093449	985	PREDICTED: similar to lethal giant larva	0.795	0.110	0.537	7e-31
340716449	1172	PREDICTED: protein lethal(2) giant larva	0.795	0.093	0.537	8e-31
350404253	1175	PREDICTED: protein lethal(2) giant larva	0.795	0.092	0.537	8e-31
340716451	1166	PREDICTED: protein lethal(2) giant larva	0.795	0.093	0.537	8e-31
383866087	1145	PREDICTED: protein lethal(2) giant larva	0.795	0.095	0.553	1e-30
328777996	1154	PREDICTED: lethal(2) giant larvae protei	0.795	0.094	0.537	1e-30
328777994	1128	PREDICTED: lethal(2) giant larvae protei	0.795	0.096	0.537	1e-30
307172666	1174	Lethal(2) giant larvae protein-like prot	0.795	0.092	0.545	2e-30

>gi|345487878|ref|XP_001604186.2| PREDICTED: protein lethal(2) giant larvae-like [Nasonia vitripennis]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 87/121 (71%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRLAVKK+  CP++ TL+IAGTAGHVI AK+S + + +  +K  TMN+V+
Sbjct: 504 VGTFDPYSDDPRLAVKKVLLCPLSSTLVIAGTAGHVITAKISAE-AINKEIKSVTMNVVN 562

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH  L           P++    S + GFQP CL+QL+PPAAVT+L +H+EW
Sbjct: 563 DRDGFVWKGHEHL-----------PARTASISFAVGFQPHCLLQLYPPAAVTALAMHSEW 611

Query: 135 G 135
           G
Sbjct: 612 G 612

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012677|gb|EFA09125.1| hypothetical protein TcasGA2_TC015986 [Tribolium castaneum]

 Score =  139 bits (349), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           +G FDPYSDDPRLAVKK+  CP++G+L++AGTAGHV++AK  T+   D  +K++TMNIVS
Sbjct: 494 IGVFDPYSDDPRLAVKKVVLCPLSGSLIVAGTAGHVVVAKFDTEV-LDGEIKVTTMNIVS 552

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH +L  K  +              + GFQ T ++QLHPPAAVT+ VL  +W
Sbjct: 553 DRDGFVWKGHNQLAPKQGEIHQ-----------TRGFQATSILQLHPPAAVTACVLQADW 601

Query: 135 G 135
           G
Sbjct: 602 G 602

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91093449|ref|XP_966843.1| PREDICTED: similar to lethal giant larva, putative [Tribolium castaneum]

 Score =  138 bits (348), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           +G FDPYSDDPRLAVKK+  CP++G+L++AGTAGHV++AK  T+   D  +K++TMNIVS
Sbjct: 494 IGVFDPYSDDPRLAVKKVVLCPLSGSLIVAGTAGHVVVAKFDTEV-LDGEIKVTTMNIVS 552

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH +L  K  +              + GFQ T ++QLHPPAAVT+ VL  +W
Sbjct: 553 DRDGFVWKGHNQLAPKQGEIHQ-----------TRGFQATSILQLHPPAAVTACVLQADW 601

Query: 135 G 135
           G
Sbjct: 602 G 602

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716449|ref|XP_003396710.1| PREDICTED: protein lethal(2) giant larvae-like isoform 1 [Bombus terrestris]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRLAVKK+  CP++ TL++AGTAGH+I   +S++   +  +K  TMNIV+
Sbjct: 491 VGTFDPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITTTISSE-PVNKEIKAITMNIVN 549

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH RL           P++    S + GFQP  L+QL+PPAAVT+L +H+EW
Sbjct: 550 DRDGFVWKGHDRL-----------PARTTSISFAVGFQPQSLLQLYPPAAVTALAMHSEW 598

Query: 135 G 135
           G
Sbjct: 599 G 599

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350404253|ref|XP_003487050.1| PREDICTED: protein lethal(2) giant larvae-like [Bombus impatiens]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRLAVKK+  CP++ TL++AGTAGH+I   +S++   +  +K  TMNIV+
Sbjct: 491 VGTFDPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITTTISSE-PVNKEIKAITMNIVN 549

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH RL           P++    S + GFQP  L+QL+PPAAVT+L +H+EW
Sbjct: 550 DRDGFVWKGHDRL-----------PARTTSISFAVGFQPQSLLQLYPPAAVTALAMHSEW 598

Query: 135 G 135
           G
Sbjct: 599 G 599

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716451|ref|XP_003396711.1| PREDICTED: protein lethal(2) giant larvae-like isoform 2 [Bombus terrestris]

 Score =  138 bits (347), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRLAVKK+  CP++ TL++AGTAGH+I   +S++   +  +K  TMNIV+
Sbjct: 491 VGTFDPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITTTISSE-PVNKEIKAITMNIVN 549

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH RL           P++    S + GFQP  L+QL+PPAAVT+L +H+EW
Sbjct: 550 DRDGFVWKGHDRL-----------PARTTSISFAVGFQPQSLLQLYPPAAVTALAMHSEW 598

Query: 135 G 135
           G
Sbjct: 599 G 599

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383866087|ref|XP_003708503.1| PREDICTED: protein lethal(2) giant larvae-like [Megachile rotundata]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 86/121 (71%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRLAVKK+  CP++ TL++AGTAGHVI A +S++ + +  +K  TMNIV+
Sbjct: 491 VGTFDPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHVITATVSSEPA-NKEIKAVTMNIVN 549

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH  L V+ T             S + GFQP  L+QL+PPAAVT+L +H+EW
Sbjct: 550 DRDGFVWKGHDHLPVRTTSI-----------SFAVGFQPQSLLQLYPPAAVTALAIHSEW 598

Query: 135 G 135
           G
Sbjct: 599 G 599

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777996|ref|XP_392864.4| PREDICTED: lethal(2) giant larvae protein-like isoform 2 [Apis mellifera]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRLAVKK+  CP++ TL++AGTAGH+I A +S++   +  +K  TMNIV+
Sbjct: 499 VGTFDPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITATISSE-PVNKEIKAVTMNIVN 557

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH  L           P++    S + GFQP  L+QL+PPAAVT+L +H+EW
Sbjct: 558 DRDGFVWKGHDHL-----------PARTTSISFAVGFQPQSLLQLYPPAAVTALAIHSEW 606

Query: 135 G 135
           G
Sbjct: 607 G 607

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777994|ref|XP_003249432.1| PREDICTED: lethal(2) giant larvae protein-like isoform 1 [Apis mellifera]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/121 (53%), Positives = 85/121 (70%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRLAVKK+  CP++ TL++AGTAGH+I A +S++   +  +K  TMNIV+
Sbjct: 490 VGTFDPYSDDPRLAVKKVLLCPLSSTLVVAGTAGHIITATISSE-PVNKEIKAVTMNIVN 548

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH  L           P++    S + GFQP  L+QL+PPAAVT+L +H+EW
Sbjct: 549 DRDGFVWKGHDHL-----------PARTTSISFAVGFQPQSLLQLYPPAAVTALAIHSEW 597

Query: 135 G 135
           G
Sbjct: 598 G 598

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172666|gb|EFN64009.1| Lethal(2) giant larvae protein-like protein 1 [Camponotus floridanus]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 84/121 (69%), Gaps = 12/121 (9%)

Query: 15  VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
           VG FDPYSDDPRLAVKK+  CP++ TL++AGTAGH+I A +S++   +  +K  TMNIV+
Sbjct: 333 VGIFDPYSDDPRLAVKKVVLCPLSSTLVVAGTAGHIIAATISSE-PVNKEIKAVTMNIVN 391

Query: 75  DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
           DRD FVWKGH  L           P +    S + GFQP  L+QL+PPAAVT+L LH+EW
Sbjct: 392 DRDGFVWKGHDHL-----------PPRTTSISFAVGFQPQSLLQLYPPAAVTALALHSEW 440

Query: 135 G 135
           G
Sbjct: 441 G 441

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
ZFIN|ZDB-GENE-060825-69	1045	llgl1 "lethal giant larvae hom	0.788	0.103	0.483	7.2e-24
UNIPROTKB|A1A4K4	1089	LLGL1 "Lethal(2) giant larvae	0.795	0.100	0.471	4.3e-23
FB|FBgn0002121	1161	l(2)gl "lethal (2) giant larva	0.832	0.098	0.458	2.1e-22
RGD|3012	1036	Llgl1 "lethal giant larvae hom	0.788	0.104	0.458	2.8e-22
UNIPROTKB|Q8MKF0	1036	LLGL1 "Lethal(2) giant larvae	0.788	0.104	0.45	4.6e-22
MGI|MGI:102682	1036	Llgl1 "lethal giant larvae hom	0.788	0.104	0.45	4.6e-22
UNIPROTKB|Q15334	1064	LLGL1 "Lethal(2) giant larvae	0.788	0.101	0.466	7.9e-22
UNIPROTKB|E2RPS3	1159	LLGL1 "Uncharacterized protein	0.788	0.093	0.466	1.1e-21
ZFIN|ZDB-GENE-030131-9877	1020	llgl2 "lethal giant larvae hom	0.788	0.105	0.441	3.2e-21
UNIPROTKB|Q6P1M3	1020	LLGL2 "Lethal(2) giant larvae	0.788	0.105	0.425	3.8e-20

ZFIN|ZDB-GENE-060825-69 llgl1 "lethal giant larvae homolog 1 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 286 (105.7 bits), Expect = 7.2e-24, P = 7.2e-24
 Identities = 58/120 (48%), Positives = 77/120 (64%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VGCFDPYSDDPRL ++KI  C  +G L++AGTAG VI+  L  + S D  + ++T++++ 
Sbjct:   497 VGCFDPYSDDPRLGIQKISLCKYSGKLVVAGTAGQVIVMVLGDEKS-DHMIDVATVDLLQ 555

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
             DR+ F WKGH RL           P K+     +PGFQP  LVQ  PPAAVT++ LH EW
Sbjct:   556 DREGFTWKGHDRL-----------PPKSGSVVFAPGFQPVVLVQCLPPAAVTAVTLHAEW 604

GO:0003674 "molecular_function" evidence=ND

GO:0048919 "posterior lateral line neuromast development" evidence=IMP

GO:0003407 "neural retina development" evidence=IMP

GO:0008593 "regulation of Notch signaling pathway" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|A1A4K4 LLGL1 "Lethal(2) giant larvae protein homolog 1" [Bos taurus (taxid:9913)]

 Score = 279 (103.3 bits), Expect = 4.3e-23, P = 4.3e-23
 Identities = 57/121 (47%), Positives = 77/121 (63%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VGCFDPYSDDPRL V+K+  C  T  +++AGTAG V++ +LS  T  + TV +++++++ 
Sbjct:   503 VGCFDPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSD-TPAEQTVGVASLDLLQ 561

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
             DR+ F WKGH RL  +        P  A       GFQP  LVQ  PPAAVT++ LH EW
Sbjct:   562 DREGFTWKGHERLSPR----LGPLPWPA-------GFQPRALVQCLPPAAVTAVTLHAEW 610

Query:   135 G 135
             G
Sbjct:   611 G 611

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

FB|FBgn0002121 l(2)gl "lethal (2) giant larvae" [Drosophila melanogaster (taxid:7227)]

 Score = 273 (101.2 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 55/120 (45%), Positives = 77/120 (64%)

Query:    16 GCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSD 75
             G FDPYSDDPRLAVKKI FCP TG L++ GTAG +++A         V++K  +MN+VSD
Sbjct:   499 GLFDPYSDDPRLAVKKIAFCPKTGQLIVGGTAGQIVIADF-IDLPEKVSLKYISMNLVSD 557

Query:    76 RDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG 135
             RD FVWKGH +L V+ ++  D E     + +   G   + ++Q+ PPA++T + L   WG
Sbjct:   558 RDGFVWKGHDQLNVR-SNLLDGEA----IPTTERGVNISGVLQVLPPASITCMALEASWG 612

GO:0005886 "plasma membrane" evidence=NAS;IDA;TAS

GO:0005578 "proteinaceous extracellular matrix" evidence=IDA

GO:0007391 "dorsal closure" evidence=TAS

GO:0005856 "cytoskeleton" evidence=NAS

GO:0005614 "interstitial matrix" evidence=NAS

GO:0042127 "regulation of cell proliferation" evidence=NAS

GO:0030154 "cell differentiation" evidence=NAS

GO:0035072 "ecdysone-mediated induction of salivary gland cell autophagic cell death" evidence=NAS;IMP

GO:0035070 "salivary gland histolysis" evidence=IMP

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0008021 "synaptic vesicle" evidence=NAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0016082 "synaptic vesicle priming" evidence=NAS

GO:0016336 "establishment or maintenance of polarity of larval imaginal disc epithelium" evidence=TAS

GO:0016327 "apicolateral plasma membrane" evidence=IDA

GO:0016335 "morphogenesis of larval imaginal disc epithelium" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0016333 "morphogenesis of follicular epithelium" evidence=IMP

GO:0016334 "establishment or maintenance of polarity of follicular epithelium" evidence=IGI

GO:0005938 "cell cortex" evidence=IDA;TAS

GO:0016332 "establishment or maintenance of polarity of embryonic epithelium" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0007399 "nervous system development" evidence=IMP

GO:0045159 "myosin II binding" evidence=IGI;TAS

GO:0045184 "establishment of protein localization" evidence=IMP

GO:0045175 "basal protein localization" evidence=IGI;NAS;IMP

GO:0017022 "myosin binding" evidence=IGI

GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IGI;IMP

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=NAS;TAS

GO:0005918 "septate junction" evidence=NAS;TAS

GO:0045196 "establishment or maintenance of neuroblast polarity" evidence=TAS

GO:0002009 "morphogenesis of an epithelium" evidence=TAS

GO:0007559 "histolysis" evidence=NAS

GO:0045200 "establishment of neuroblast polarity" evidence=TAS

GO:0019991 "septate junction assembly" evidence=TAS

GO:0008360 "regulation of cell shape" evidence=NAS

GO:0008105 "asymmetric protein localization" evidence=IMP;TAS

GO:0045167 "asymmetric protein localization involved in cell fate determination" evidence=IMP;TAS;IPI

GO:0008104 "protein localization" evidence=TAS

GO:0045746 "negative regulation of Notch signaling pathway" evidence=IGI

GO:0007423 "sensory organ development" evidence=IMP

GO:0051726 "regulation of cell cycle" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0001738 "morphogenesis of a polarized epithelium" evidence=TAS

GO:0016323 "basolateral plasma membrane" evidence=TAS

GO:0051668 "localization within membrane" evidence=IMP

GO:0007406 "negative regulation of neuroblast proliferation" evidence=IMP

GO:0030036 "actin cytoskeleton organization" evidence=IMP

GO:0016325 "oocyte microtubule cytoskeleton organization" evidence=IMP

GO:0007314 "oocyte anterior/posterior axis specification" evidence=IMP

GO:0055059 "asymmetric neuroblast division" evidence=IGI

GO:0035212 "cell competition in a multicellular organism" evidence=IMP

GO:0090163 "establishment of epithelial cell planar polarity" evidence=IMP

GO:0048730 "epidermis morphogenesis" evidence=IMP

GO:0035293 "chitin-based larval cuticle pattern formation" evidence=IMP

GO:0005920 "smooth septate junction" evidence=IDA

RGD|3012 Llgl1 "lethal giant larvae homolog 1 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 271 (100.5 bits), Expect = 2.8e-22, P = 2.8e-22
 Identities = 55/120 (45%), Positives = 76/120 (63%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VGCFDPYSDDPRL ++K+  C  T  +++AGTAG V++ +LS     + TV +++++++ 
Sbjct:   502 VGCFDPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELSDVPG-EHTVSVASVDLLQ 560

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
             DR+ F WKGH RL   HT      P  A       GFQP  L+Q  PPAAVT++ LH EW
Sbjct:   561 DREGFTWKGHERLS-PHTGPL---PWPA-------GFQPRVLIQCLPPAAVTAVALHAEW 609

GO:0000137 "Golgi cis cisterna" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA;ISO

GO:0006461 "protein complex assembly" evidence=IEA;ISO

GO:0006887 "exocytosis" evidence=IEA

GO:0006893 "Golgi to plasma membrane transport" evidence=IMP

GO:0007409 "axonogenesis" evidence=IMP

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0019901 "protein kinase binding" evidence=IEA;ISO

GO:0030424 "axon" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA;ISO

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA;ISO

GO:0031901 "early endosome membrane" evidence=IDA

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IDA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA;ISO

GO:0035748 "myelin sheath abaxonal region" evidence=IEA;ISO

UNIPROTKB|Q8MKF0 LLGL1 "Lethal(2) giant larvae protein homolog 1" [Bos taurus (taxid:9913)]

 Score = 269 (99.8 bits), Expect = 4.6e-22, P = 4.6e-22
 Identities = 54/120 (45%), Positives = 76/120 (63%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VGCFDPYSDDPRL ++K+  C  T  +++AGTAG V++ +LS +   +  V ++ ++++ 
Sbjct:   502 VGCFDPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELS-EVPAEHAVSVANVDLLQ 560

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
             DR+ F WKGH RL   HT          LL   + GFQP  L+Q  PPAAVT++ LH EW
Sbjct:   561 DREGFTWKGHERLN-PHT---------GLLPWPA-GFQPRMLIQCLPPAAVTAVTLHAEW 609

GO:0032851 "positive regulation of Rab GTPase activity" evidence=ISS

GO:0032588 "trans-Golgi network membrane" evidence=ISS

GO:0031901 "early endosome membrane" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0000137 "Golgi cis cisterna" evidence=ISS

GO:0005097 "Rab GTPase activator activity" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0006893 "Golgi to plasma membrane transport" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0006887 "exocytosis" evidence=IEA

MGI|MGI:102682 Llgl1 "lethal giant larvae homolog 1 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 269 (99.8 bits), Expect = 4.6e-22, P = 4.6e-22
 Identities = 54/120 (45%), Positives = 76/120 (63%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VGCFDPYSDDPRL ++K+  C  T  +++AGTAG V++ +LS +   +  V ++ ++++ 
Sbjct:   502 VGCFDPYSDDPRLGIQKVALCKYTAQMVVAGTAGQVLVLELS-EVPAEHAVSVANVDLLQ 560

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
             DR+ F WKGH RL   HT          LL   + GFQP  L+Q  PPAAVT++ LH EW
Sbjct:   561 DREGFTWKGHERLN-PHT---------GLLPWPA-GFQPRMLIQCLPPAAVTAVTLHAEW 609

GO:0000137 "Golgi cis cisterna" evidence=ISO

GO:0005097 "Rab GTPase activator activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IDA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0006887 "exocytosis" evidence=IEA

GO:0006893 "Golgi to plasma membrane transport" evidence=ISO

GO:0007409 "axonogenesis" evidence=ISO

GO:0007420 "brain development" evidence=TAS

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=ISO

GO:0019901 "protein kinase binding" evidence=ISO

GO:0030424 "axon" evidence=ISO

GO:0030864 "cortical actin cytoskeleton" evidence=ISO

GO:0030866 "cortical actin cytoskeleton organization" evidence=ISO

GO:0031901 "early endosome membrane" evidence=ISO

GO:0032588 "trans-Golgi network membrane" evidence=ISO

GO:0032851 "positive regulation of Rab GTPase activity" evidence=ISO

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IMP

GO:0035748 "myelin sheath abaxonal region" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|Q15334 LLGL1 "Lethal(2) giant larvae protein homolog 1" [Homo sapiens (taxid:9606)]

 Score = 267 (99.0 bits), Expect = 7.9e-22, P = 7.9e-22
 Identities = 56/120 (46%), Positives = 75/120 (62%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VGCFDPYSDDPRL V+K+  C  T  +++AGTAG V++ +LS     +  V ++ ++++ 
Sbjct:   503 VGCFDPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSD-VPVEQAVSVAIIDLLQ 561

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
             DR+ F WKGH RL  + T      P  A       GFQP  LVQ  PPAAVT++ LHTEW
Sbjct:   562 DREGFTWKGHERLSPR-TGPL---PWPA-------GFQPRVLVQCLPPAAVTAVTLHTEW 610

GO:0006887 "exocytosis" evidence=IEA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006461 "protein complex assembly" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IDA

GO:0006893 "Golgi to plasma membrane transport" evidence=ISS

GO:0007409 "axonogenesis" evidence=ISS

GO:0005097 "Rab GTPase activator activity" evidence=ISS

GO:0000137 "Golgi cis cisterna" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0031901 "early endosome membrane" evidence=ISS

GO:0032588 "trans-Golgi network membrane" evidence=ISS

GO:0005198 "structural molecule activity" evidence=TAS

GO:0005856 "cytoskeleton" evidence=TAS

GO:0032851 "positive regulation of Rab GTPase activity" evidence=ISS

UNIPROTKB|E2RPS3 LLGL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 266 (98.7 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 56/120 (46%), Positives = 76/120 (63%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VGCFDPYSDDPRL V+K+  C  T  +++AGTAG V++ +LS   S +  V +++++++ 
Sbjct:   598 VGCFDPYSDDPRLGVQKVALCKYTAQMVVAGTAGQVLVLELSDVPS-EQAVSVASVDLLQ 656

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
             DR+ F WKGH RL  + T      P  A       GFQP  LVQ  PPAAVT++ LH EW
Sbjct:   657 DREGFTWKGHERLSPR-TGPL---PWPA-------GFQPRVLVQCLPPAAVTAVTLHAEW 705

GO:0035748 "myelin sheath abaxonal region" evidence=IEA

GO:0035090 "maintenance of apical/basal cell polarity" evidence=IEA

GO:0030866 "cortical actin cytoskeleton organization" evidence=IEA

GO:0030864 "cortical actin cytoskeleton" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=IEA

ZFIN|ZDB-GENE-030131-9877 llgl2 "lethal giant larvae homolog 2 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 261 (96.9 bits), Expect = 3.2e-21, P = 3.2e-21
 Identities = 53/120 (44%), Positives = 79/120 (65%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VGCFDPYSDDPRL ++KI  C  +G L +AGTAG +++ +L+ + +  + V+ + ++++ 
Sbjct:   491 VGCFDPYSDDPRLGIQKIHLCKYSGYLTVAGTAGQILVLELNDEAAEQM-VEATVVDLLQ 549

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
              ++ F WKG ARL V+      +EP   +L    PGFQP  LVQ  PPA VT++ LH+EW
Sbjct:   550 GQEGFRWKGQARLDVR------EEP---VL--FPPGFQPFALVQCQPPAVVTAIALHSEW 598

GO:0043588 "skin development" evidence=IMP

GO:0048919 "posterior lateral line neuromast development" evidence=IMP

GO:0031581 "hemidesmosome assembly" evidence=IMP

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

GO:0010719 "negative regulation of epithelial to mesenchymal transition" evidence=IMP

GO:0006887 "exocytosis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0008544 "epidermis development" evidence=IMP

GO:0030336 "negative regulation of cell migration" evidence=IMP

GO:0007010 "cytoskeleton organization" evidence=IMP

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0045682 "regulation of epidermis development" evidence=IGI

UNIPROTKB|Q6P1M3 LLGL2 "Lethal(2) giant larvae protein homolog 2" [Homo sapiens (taxid:9606)]

 Score = 251 (93.4 bits), Expect = 3.8e-20, P = 3.8e-20
 Identities = 51/120 (42%), Positives = 72/120 (60%)

Query:    15 VGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVS 74
             VG FDPYSDDPRL ++KI  C  +G L +AGTAG V++ +L+ + +     ++   +++ 
Sbjct:   493 VGSFDPYSDDPRLGIQKIFLCKYSGYLAVAGTAGQVLVLELNDEAAEQAVEQVEA-DLLQ 551

Query:    75 DRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEW 134
             D++ + WKGH RL  +        P +       PGFQP  LVQ  PPA VTSL LH+EW
Sbjct:   552 DQEGYRWKGHERLAAR------SGPVR-----FEPGFQPFVLVQCQPPAVVTSLALHSEW 600

GO:0006887 "exocytosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0032878 "regulation of establishment or maintenance of cell polarity" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG1983|consensus	993		99.32
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.03
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.09
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	94.52
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	92.3
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	85.78
KOG2055|consensus	514		83.99
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	83.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	82.04

>KOG1983|consensus

Probab=99.32  E-value=1.7e-12  Score=123.08  Aligned_cols=116  Identities=40%  Similarity=0.622  Sum_probs=109.4

Q ss_pred             CCcccccccCCCCCCccceEEEEEeecCCCeEEEecccceEEEEEecCCCcceeeEeEEEeeeeeCCCCccccCcccccc
Q psy6173          10 SLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDVTVKISTMNIVSDRDSFVWKGHARLGV   89 (137)
Q Consensus        10 ~PfrkvG~~DP~sDDprlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~~ei~~l~v~l~~d~e~~~w~g~~~L~v   89 (137)
                      ..|+.=|+||||+||+++.++++.+|+.++.++|+|++||+.+.++.... ++..+...++++.+++..+.|++|..|..
T Consensus       474 ~~~~t~~~~~~~~~~~~~~~~~~~ic~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  552 (993)
T KOG1983|consen  474 SAFLTDGSFDPYSDDPRLGVQKPALCKKSGQLAVGGTAGQILTLELTDSI-VTGAVSFFCADLNQDVSVFKWKGHDRLSP  552 (993)
T ss_pred             cccccCCcCCcccccccccCCcchhcccccccccccccceeeeeeecccc-cccceeeeehhhhhccccccccCchhccc
Confidence            44554588999999999999999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             ccCCCCCCCCccccccccCCCCcceEEEEeCCCcceeEEEeeccccCC
Q psy6173          90 KHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWGEY  137 (137)
Q Consensus        90 r~~~~~~~~~vk~~~~~~ppGfQ~~lv~ql~PP~~ITsLal~SsyGLv  137 (137)
                      +.           +++..+.|+|+...+|+.||..+++.++.+.|.++
T Consensus       553 ~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~  589 (993)
T KOG1983|consen  553 RS-----------NPLSLPDGFQPFVDVQDRPPAGVTQGTLASGWILV  589 (993)
T ss_pred             cc-----------cccCCCCccccceEEEecCCcceeeeccccceecc
Confidence            97           88899999999999999999999999999999875

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.03  E-value=1.1e-05  Score=70.23  Aligned_cols=95  Identities=22%  Similarity=0.307  Sum_probs=47.1

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCCccee-eEeEEEeeeeeCCCCccccCcccc-ccccCCCCCCCCccccc
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDV-TVKISTMNIVSDRDSFVWKGHARL-GVKHTDSKDKEPSKALL  104 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~~~~-ei~~l~v~l~~d~e~~~w~g~~~L-~vr~~~~~~~~~vk~~~  104 (137)
                      ++|+.|+||++++-|+|+-.+|.|+||||.+.. ... .-.--..+.-..+....+. ...| .++.         | .+
T Consensus         2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~-~~~~~~~~~~~~~~~~~~~~~~~-~~~l~di~~---------r-~~   69 (395)
T PF08596_consen    2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQ-NYGNREQPPDLDYNFRRFSLNNS-PGKLTDISD---------R-AP   69 (395)
T ss_dssp             --EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S--GGGS-S-SEEE-GG---------G---
T ss_pred             ceEEEEEecCCCceEEEEccCCcEEEEEcccCC-CCCccCCCcccCcccccccccCC-CcceEEehh---------h-CC
Confidence            689999999999999999999999999999875 222 1111111111000000011 1111 1111         0 11


Q ss_pred             cccCCCCcceEEEEeCCCcceeEEEeecccc
Q psy6173         105 KSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG  135 (137)
Q Consensus       105 ~~~ppGfQ~~lv~ql~PP~~ITsLal~SsyG  135 (137)
                      .....||+|-.++++. -.+||||+. |.=|
T Consensus        70 ~~~~~gf~P~~l~~~~-~g~vtal~~-S~iG   98 (395)
T PF08596_consen   70 PSLKEGFLPLTLLDAK-QGPVTALKN-SDIG   98 (395)
T ss_dssp             TT-SEEEEEEEEE----S-SEEEEEE--BTS
T ss_pred             cccccccCchhheecc-CCcEeEEec-CCCc
Confidence            2234589999999999 899999998 3443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.09  E-value=0.0011  Score=41.87  Aligned_cols=32  Identities=19%  Similarity=0.472  Sum_probs=29.1

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -|+.+.|||....|+++-..|+|.+||++-+.
T Consensus        13 ~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~qr   44 (47)
T PF12894_consen   13 RVSCMSWCPTMDLIALGTEDGEVLVYRLNWQR   44 (47)
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEECCCcC
Confidence            49999999999999999999999999996543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=94.52  E-value=0.12  Score=29.15  Aligned_cols=28  Identities=14%  Similarity=0.261  Sum_probs=26.0

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEE
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAK   54 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~   54 (137)
                      -.|.-|.|.|..+.|++++..|.|-+|+
T Consensus        12 ~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   12 SSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4799999999999999999999999985

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>smart00320 WD40 WD40 repeats

Probab=92.30  E-value=0.3  Score=24.44  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=24.2

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEE
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAK   54 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~   54 (137)
                      .|..+.|.+..+.++.++..|++.+|+
T Consensus        14 ~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       14 PVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             ceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            689999999999999999999998873

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=85.78  E-value=3.2  Score=25.95  Aligned_cols=30  Identities=30%  Similarity=0.378  Sum_probs=27.8

Q ss_pred             eEEEEEeecCCC---eEEEecccceEEEEEecC
Q psy6173          28 AVKKICFCPVTG---TLLIAGTAGHVILAKLST   57 (137)
Q Consensus        28 AIq~I~lCpeSr---~L~VaG~sG~Vil~~f~~   57 (137)
                      ||.-+.|||+++   .|+.+--.|+|-|+..+.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            788999999988   999999999999999874

It contains a characteristic DLL sequence motif.

>KOG2055|consensus

Probab=83.99  E-value=1.3  Score=40.37  Aligned_cols=29  Identities=38%  Similarity=0.550  Sum_probs=26.8

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLS   56 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~   56 (137)
                      -++-++|-|.||.||||..+|+|-|||+.
T Consensus       484 ~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  484 HVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             ceEEEEecCCCceEEeecCCCceeeEeec
Confidence            47788999999999999999999999985

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=83.98  E-value=2.5  Score=30.62  Aligned_cols=33  Identities=21%  Similarity=0.223  Sum_probs=29.4

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|.|..+.|++++..|+|.+|++...+
T Consensus        10 ~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~   42 (289)
T cd00200          10 GGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE   42 (289)
T ss_pred             CCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC
Confidence            358999999999999999999999999998654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=82.04  E-value=4.3  Score=29.37  Aligned_cols=33  Identities=15%  Similarity=0.063  Sum_probs=29.2

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      ..|..+.|+|.+..|++++..|+|.+|++...+
T Consensus        52 ~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~   84 (289)
T cd00200          52 GPVRDVAASADGTYLASGSSDKTIRLWDLETGE   84 (289)
T ss_pred             cceeEEEECCCCCEEEEEcCCCeEEEEEcCccc
Confidence            467899999999999999999999999998744

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	1e-14

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} Length = 902

 Score = 68.4 bits (166), Expect = 1e-14
 Identities = 25/132 (18%), Positives = 44/132 (33%), Gaps = 10/132 (7%)

Query: 4   SGPRSESLNLNVGCFDPYSDDPRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTSTDV 63
            G   ++ +  V      +    LAV KI F   T  L ++   G V+L K        V
Sbjct: 466 HGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSV 525

Query: 64  TVKISTMNIVSDRDSFVWKGHARLGVKHTDSKDKEPSKALLKSVSPGFQPTCLVQLHPPA 123
               +         +F             D +D+ P+      V  GF P+  V  +   
Sbjct: 526 E---NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTG-----VRQGFMPSTAVHAN-KG 576

Query: 124 AVTSLVLHTEWG 135
             +++  ++  G
Sbjct: 577 KTSAIN-NSNIG 587

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	97.16
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	91.24
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	90.91
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	89.59
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	89.4
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	88.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	88.73
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	87.9
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	87.32
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	86.43
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	86.29
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	86.19
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	85.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	85.86
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	84.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	84.74
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	84.57
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	84.4
3jrp_A	379	Fusion protein of protein transport protein SEC13	83.2
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	82.32
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	81.86
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	81.84
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	81.71
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	81.53
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	81.42
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	81.1
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	80.76
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	80.75
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	80.37
3jrp_A	379	Fusion protein of protein transport protein SEC13	80.35
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	80.28
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	80.25

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.00047  Score=62.53  Aligned_cols=91  Identities=21%  Similarity=0.276  Sum_probs=57.3

Q ss_pred             cceEEEEEeecCCCeEEEecccceEEEEEecCCCc---------ceeeEeEEEeeeeeCCCCccccCccccccccCCCCC
Q psy6173          26 RLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKTS---------TDVTVKISTMNIVSDRDSFVWKGHARLGVKHTDSKD   96 (137)
Q Consensus        26 rlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e~---------~~~ei~~l~v~l~~d~e~~~w~g~~~L~vr~~~~~~   96 (137)
                      ..+|..|+|||.+++|++|+..|.|.||++...+.         ...++.+...++...+     .++..+..|.     
T Consensus       488 ~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~-----  557 (902)
T 2oaj_A          488 ELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTN-----GVLVDVRDRA-----  557 (902)
T ss_dssp             SCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSS-----CSEEECGGGC-----
T ss_pred             CCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCc-----cccccccccC-----
Confidence            35899999999999999999999999999986530         1111211111222111     2334444443     


Q ss_pred             CCCccccccccCCCCcceEEEEeCCCcceeEEEeecccc
Q psy6173          97 KEPSKALLKSVSPGFQPTCLVQLHPPAAVTSLVLHTEWG  135 (137)
Q Consensus        97 ~~~vk~~~~~~ppGfQ~~lv~ql~PP~~ITsLal~SsyG  135 (137)
                            .+ ....|||+..+++. ....||+||++ ..|
T Consensus       558 ------~~-~~~~g~~~~~~l~~-h~~~V~svafS-pdG  587 (902)
T 2oaj_A          558 ------PT-GVRQGFMPSTAVHA-NKGKTSAINNS-NIG  587 (902)
T ss_dssp             ------CT-TCSEEEEEEEEECC-CSCSEEEEEEC-BTS
T ss_pred             ------CC-CCCCccceeEEEEc-CCCcEEEEEec-CCc
Confidence                  22 34558888766665 56889999954 555

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=91.24  E-value=0.49  Score=34.46  Aligned_cols=33  Identities=24%  Similarity=0.155  Sum_probs=30.3

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|.|..+.|+++|..|.|.+|+++...
T Consensus       307 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  339 (351)
T 3f3f_A          307 GEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN  339 (351)
T ss_dssp             SCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred             ccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence            369999999999999999999999999998765

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=90.91  E-value=0.58  Score=34.69  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=28.1

Q ss_pred             eEEEEEeecCC-CeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVT-GTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeS-r~L~VaG~sG~Vil~~f~~~e   59 (137)
                      +|.-|+|+|+. .+|+.||..|.|.||++.+.+
T Consensus        40 ~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~   72 (340)
T 4aow_A           40 WVTQIATTPQFPDMILSASRDKTIIMWKLTRDE   72 (340)
T ss_dssp             CEEEEEECTTCTTEEEEEETTSCEEEEEECCSS
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            68899999985 578889999999999998766

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=89.59  E-value=0.62  Score=36.21  Aligned_cols=33  Identities=12%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      =+|.-|.|.|....|++|+..|.|.||++...+
T Consensus        29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~   61 (447)
T 3dw8_B           29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQEN   61 (447)
T ss_dssp             GSEEEEEECSSSSEEEEEETTSEEEEEEECC--
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCC
Confidence            489999999999999999999999999998654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=89.40  E-value=0.6  Score=33.98  Aligned_cols=33  Identities=15%  Similarity=0.157  Sum_probs=30.0

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      =+|..|.|.|....|++|+..|.|.+|++....
T Consensus        12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~   44 (351)
T 3f3f_A           12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT   44 (351)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEECSSS
T ss_pred             cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC
Confidence            479999999999999999999999999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=88.94  E-value=0.45  Score=35.41  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=29.7

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|+|..+.|++++..|.|.+|++++..
T Consensus       316 ~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          316 GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            368889999999999999999999999998654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=88.73  E-value=0.53  Score=35.08  Aligned_cols=31  Identities=10%  Similarity=0.090  Sum_probs=27.4

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST   57 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~   57 (137)
                      -.|..++|.|.++.|++++..|.|.+|++.+
T Consensus       336 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          336 AAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            4799999999999999999999999999853

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=87.90  E-value=0.62  Score=34.54  Aligned_cols=31  Identities=13%  Similarity=0.091  Sum_probs=28.5

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST   57 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~   57 (137)
                      -.|..++|.|..++|++||..|.|.||+++.
T Consensus       307 ~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t  337 (340)
T 4aow_A          307 PQCTSLAWSADGQTLFAGYTDNLVRVWQVTI  337 (340)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence            4789999999999999999999999999865

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=87.32  E-value=0.65  Score=34.08  Aligned_cols=31  Identities=16%  Similarity=0.091  Sum_probs=28.3

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTK   58 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~   58 (137)
                      .|.-|+|.|...+|+.||..|.|.||++.+.
T Consensus       286 ~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          286 RVLSLTMSPDGATVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred             CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            6899999999999999999999999998654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=86.43  E-value=0.71  Score=34.28  Aligned_cols=32  Identities=38%  Similarity=0.565  Sum_probs=29.7

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      +|..+.|+|..+.|++++..|.|.+|++...+
T Consensus       275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~  306 (368)
T 3mmy_A          275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDART  306 (368)
T ss_dssp             CEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             ceEEEEEecCCCEEEEEccCCeEEEEECCCCc
Confidence            69999999999999999999999999998655

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=86.29  E-value=0.98  Score=33.56  Aligned_cols=33  Identities=21%  Similarity=0.284  Sum_probs=30.2

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      =+|.-++|+|....|++++..|.|.+|++...+
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~   44 (342)
T 1yfq_A           12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA   44 (342)
T ss_dssp             SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC
Confidence            479999999999999999999999999998665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=86.19  E-value=0.94  Score=34.26  Aligned_cols=33  Identities=18%  Similarity=0.326  Sum_probs=30.0

Q ss_pred             ceEEEEEeec-CCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCP-VTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..|.|+| ....|++++..|.|.+|++...+
T Consensus        44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~   77 (408)
T 4a11_B           44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSS   77 (408)
T ss_dssp             SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCS
T ss_pred             CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCc
Confidence            4799999999 89999999999999999998765

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=85.89  E-value=5  Score=29.64  Aligned_cols=33  Identities=27%  Similarity=0.251  Sum_probs=29.4

Q ss_pred             ceEEEEEeecCCC-eEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTG-TLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr-~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|+|..+ .|++++..|.|.+|+++...
T Consensus       260 ~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  293 (357)
T 3i2n_A          260 STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPI  293 (357)
T ss_dssp             SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCS
T ss_pred             CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCc
Confidence            4789999999988 79999999999999998665

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=85.86  E-value=1.7  Score=31.74  Aligned_cols=33  Identities=9%  Similarity=0.144  Sum_probs=29.9

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|.-|.|.|..+.|++|+..|.|.+|.++..+
T Consensus        68 ~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK  100 (318)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CeEEEEEECCCCCEEEEEECCCcEEEeecCCce
Confidence            468999999999999999999999999987665

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=84.93  E-value=1.5  Score=32.50  Aligned_cols=33  Identities=3%  Similarity=-0.049  Sum_probs=30.0

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..|.|.|....|++++..|.|.+|++...+
T Consensus        33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~   65 (369)
T 3zwl_B           33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGE   65 (369)
T ss_dssp             SCEEEEEECTTSCEEEEEESSSCEEEEETTTCC
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCch
Confidence            479999999999999999999999999987665

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=84.74  E-value=1.2  Score=33.05  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=29.7

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|.|...+|++++..|.|.+|+++..+
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~  119 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ  119 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC
Confidence            368899999999999999999999999998665

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=84.57  E-value=1.9  Score=32.09  Aligned_cols=33  Identities=12%  Similarity=0.230  Sum_probs=30.2

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      ..|..+.|.|....|++++..|.|.+|+++..+
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~   98 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK   98 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCc
Confidence            578999999999999999999999999998665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=84.40  E-value=1.3  Score=33.48  Aligned_cols=33  Identities=12%  Similarity=-0.042  Sum_probs=29.0

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|.|..+.|++++..|.|.+|+++..+
T Consensus       335 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          335 KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence            468899999999999999999999999998776

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=83.20  E-value=1.4  Score=32.97  Aligned_cols=31  Identities=3%  Similarity=-0.018  Sum_probs=28.4

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLST   57 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~   57 (137)
                      -+|..|+|.|...+|++|+..|.|.+|++..
T Consensus        12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~   42 (379)
T 3jrp_A           12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG   42 (379)
T ss_dssp             CCEEEEEECSSSSEEEEEETTSCEEEEEEET
T ss_pred             ccEEEEEEcCCCCEEEEEECCCcEEEEecCC
Confidence            3699999999999999999999999999974

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=82.32  E-value=1.6  Score=32.63  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=29.7

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..|.|.|....|++++..|.|.+|++...+
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~   85 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   85 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe
Confidence            478999999999999999999999999997654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=81.86  E-value=1.3  Score=33.56  Aligned_cols=29  Identities=3%  Similarity=0.011  Sum_probs=27.4

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEec
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLS   56 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~   56 (137)
                      .|..+.|.|..+.|++++..|.|.+|++.
T Consensus       396 ~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          396 YIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             CEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             ceEEEEccCCCceEEEEecCceEEEEeec
Confidence            79999999999999999999999999875

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=81.84  E-value=2.5  Score=30.67  Aligned_cols=32  Identities=13%  Similarity=0.047  Sum_probs=28.5

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..|+| |..++|++++..|.|.+|++...+
T Consensus        19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~   50 (313)
T 3odt_A           19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQW   50 (313)
T ss_dssp             SCEEEEEE-EETTEEEEEETTSEEEEEEESSSE
T ss_pred             CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCE
Confidence            46888999 999999999999999999997655

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=81.71  E-value=3.4  Score=31.77  Aligned_cols=33  Identities=15%  Similarity=0.221  Sum_probs=29.5

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..|+|.|...+|++++..|.|.+|+++..+
T Consensus       106 ~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~  138 (345)
T 3fm0_A          106 NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED  138 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECTTS
T ss_pred             CCceEEEEeCCCCEEEEEECCCeEEEEECCCCC
Confidence            368899999999999999999999999997654

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=81.53  E-value=2.2  Score=31.26  Aligned_cols=33  Identities=9%  Similarity=-0.001  Sum_probs=30.0

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|.|..+.|++++..|.|.+|++...+
T Consensus       266 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~  298 (337)
T 1gxr_A          266 SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA  298 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cceeEEEECCCCCEEEEecCCCcEEEEECCCCe
Confidence            468999999999999999999999999998766

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=81.42  E-value=2.6  Score=32.02  Aligned_cols=33  Identities=27%  Similarity=0.227  Sum_probs=30.0

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|.|..+.|++++..|.|.+|+++..+
T Consensus       292 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  324 (397)
T 1sq9_A          292 SWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  324 (397)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            468999999999999999999999999997665

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=81.10  E-value=2.9  Score=30.58  Aligned_cols=33  Identities=15%  Similarity=-0.034  Sum_probs=29.9

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|+|....|++++..|.|.+|.++..+
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~  216 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGR  216 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCc
Confidence            368899999999999999999999999998665

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=80.76  E-value=3.1  Score=31.89  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      .|.-|.|.|.++.|++|+..|.|.+|+....+
T Consensus        57 ~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~   88 (340)
T 1got_B           57 KIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN   88 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTCC
T ss_pred             ceEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            68999999999999999999999999986655

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=80.75  E-value=3.1  Score=31.93  Aligned_cols=33  Identities=12%  Similarity=0.214  Sum_probs=30.0

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|.|....|++|+..|.|.+|.+...+
T Consensus       140 ~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A          140 SEITKLKFFPSGEALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             CccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc
Confidence            468999999999999999999999999998665

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=80.37  E-value=2  Score=31.84  Aligned_cols=33  Identities=12%  Similarity=0.217  Sum_probs=28.8

Q ss_pred             ceEEEEEeecCCC-eEEEecccceEEEEEe-cCCC
Q psy6173          27 LAVKKICFCPVTG-TLLIAGTAGHVILAKL-STKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr-~L~VaG~sG~Vil~~f-~~~e   59 (137)
                      -.|..+.|+|... .|++++..|.|.+|.+ ...+
T Consensus        57 ~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~   91 (342)
T 1yfq_A           57 HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPS   91 (342)
T ss_dssp             SCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSS
T ss_pred             CceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCc
Confidence            3688999999999 9999999999999998 5544

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=80.35  E-value=3  Score=31.07  Aligned_cols=33  Identities=15%  Similarity=0.126  Sum_probs=29.9

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..+.|.|....|++++..|.|.+|+++...
T Consensus       257 ~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          257 DVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             SCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence            468999999999999999999999999998654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=80.28  E-value=1.9  Score=33.73  Aligned_cols=32  Identities=16%  Similarity=0.258  Sum_probs=26.2

Q ss_pred             eEEEEEeec-CCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCP-VTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCp-eSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      .|.-|+|.| ..++|+.+|..|.|.+|.+....
T Consensus       313 ~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          313 FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             CEEEEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred             CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence            588899999 67889999999999999997665

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=80.25  E-value=3  Score=31.36  Aligned_cols=32  Identities=31%  Similarity=0.290  Sum_probs=29.3

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      .|.-|.|.|....|++|+..|.|.+|++....
T Consensus        15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~   46 (304)
T 2ynn_A           15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQV   46 (304)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCc
Confidence            58999999999999999999999999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	93.38
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	91.51
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	90.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.58
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	89.49
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	87.5
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	86.09
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	85.51
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	85.43
d1tbga_	340	beta1-subunit of the signal-transducing G protein	84.54
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	84.3
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	84.08
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	82.4
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	81.56
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	80.44

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.38  E-value=0.1  Score=35.69  Aligned_cols=35  Identities=23%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             ccceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          25 PRLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        25 prlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      |+=.|.-|+|.|..+.|++|+..|.|.||+++...
T Consensus        10 h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~   44 (342)
T d1yfqa_          10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA   44 (342)
T ss_dssp             CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT
T ss_pred             CCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCC
Confidence            44489999999999999999999999999987654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.51  E-value=0.16  Score=34.45  Aligned_cols=32  Identities=19%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      +|..|+|+|....|++|+..|.|.||++...+
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~   50 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGD   50 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCC
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCC
Confidence            69999999999999999999999999987655

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.96  E-value=0.12  Score=35.40  Aligned_cols=34  Identities=29%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             cceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          26 RLAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        26 rlAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      ..+|.-|+|.|..++|++||..|.|.+|.++...
T Consensus       251 ~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             cccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence            3578899999999999999999999999987554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.58  E-value=0.22  Score=34.57  Aligned_cols=32  Identities=16%  Similarity=0.186  Sum_probs=29.5

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      +|.-|+|+|...+|++||..|.|.+|.+...+
T Consensus        57 ~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~   88 (340)
T d1tbga_          57 KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTN   88 (340)
T ss_dssp             CEEEEEECTTSSEEEEEETTTEEEEEETTTTE
T ss_pred             CEEEEEECCCCCEEEEEECCCceeeeecccce
Confidence            58999999999999999999999999987665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.49  E-value=0.21  Score=34.85  Aligned_cols=32  Identities=25%  Similarity=0.251  Sum_probs=28.8

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      +|.-|+|+|..++|+.|+..|.|.+|.++...
T Consensus        14 ~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~   45 (299)
T d1nr0a2          14 AITALSSSADGKTLFSADAEGHINSWDISTGI   45 (299)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred             CcEEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            69999999999999999999999999986533

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.50  E-value=0.46  Score=31.98  Aligned_cols=32  Identities=13%  Similarity=0.079  Sum_probs=29.0

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      .|..+.+.|..+.|++++..|.|.+|.+...+
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKR  280 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTSC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCCc
Confidence            68889999999999999999999999987655

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.09  E-value=0.56  Score=34.40  Aligned_cols=32  Identities=19%  Similarity=0.335  Sum_probs=29.1

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      +|..|.|+|.+.+|+++|..|.|.||.++..+
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~   84 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT   84 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeecccc
Confidence            68999999999999999999999999997554

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.51  E-value=0.54  Score=34.13  Aligned_cols=33  Identities=12%  Similarity=-0.030  Sum_probs=29.9

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|.-|.|.|...+|++|+..|.|.+|++...+
T Consensus        59 ~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~   91 (311)
T d1nr0a1          59 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT   91 (311)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEESSSTT
T ss_pred             CCEEEEEEeCCCCeEeccccCceEeeeeeeccc
Confidence            468999999999999999999999999998765

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=85.43  E-value=0.66  Score=33.66  Aligned_cols=32  Identities=13%  Similarity=0.154  Sum_probs=28.7

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      .|..|+|+|.+..|+++|..|.|.||.+++..
T Consensus       240 ~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~  271 (311)
T d1nr0a1         240 SVFGLTWSPDGTKIASASADKTIKIWNVATLK  271 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTE
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence            58999999999999999999999999987554

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.54  E-value=0.78  Score=31.53  Aligned_cols=33  Identities=9%  Similarity=-0.005  Sum_probs=29.9

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      ..|..+.|+|..+.|++|+..|.|.+|...+.+
T Consensus       271 ~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~  303 (340)
T d1tbga_         271 CGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD  303 (340)
T ss_dssp             SCEEEEEECSSSCEEEEEETTSCEEEEETTTCC
T ss_pred             CceEEEEECCCCCEEEEEECCCEEEEEECCCCc
Confidence            568999999999999999999999999987665

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=84.30  E-value=0.61  Score=32.30  Aligned_cols=33  Identities=15%  Similarity=0.204  Sum_probs=29.5

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -.|..++|+|...+|++++..|.|.+|+++...
T Consensus       225 ~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~  257 (299)
T d1nr0a2         225 AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  257 (299)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             cccccccccccccceEEEcCCCEEEEEECCCCC
Confidence            468999999999999999999999999987654

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.08  E-value=0.71  Score=33.13  Aligned_cols=32  Identities=22%  Similarity=0.325  Sum_probs=28.4

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      .|.-|+|.|..++|++|+..|.|.+|.+....
T Consensus        99 ~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          99 YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             BEEEEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             cEEEEEEcCCCCEEEEeecccccccccccccc
Confidence            58999999999999999999999999987543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.40  E-value=0.7  Score=33.16  Aligned_cols=28  Identities=4%  Similarity=-0.037  Sum_probs=25.5

Q ss_pred             eEEEEEeecCCCeEEEecccceEEEEEe
Q psy6173          28 AVKKICFCPVTGTLLIAGTAGHVILAKL   55 (137)
Q Consensus        28 AIq~I~lCpeSr~L~VaG~sG~Vil~~f   55 (137)
                      .|..+.|+|..++|++||..|+|.+|++
T Consensus       308 ~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         308 SVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            5778899999999999999999999986

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=81.56  E-value=0.8  Score=31.66  Aligned_cols=31  Identities=16%  Similarity=0.141  Sum_probs=27.6

Q ss_pred             EEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          29 VKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        29 Iq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      +..|+|-|..++|+|+|..|.|.+|.....+
T Consensus       294 ~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~  324 (346)
T d1jmxb_         294 YYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  324 (346)
T ss_dssp             CCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEECccCC
Confidence            5568899999999999999999999887666

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.44  E-value=0.91  Score=30.09  Aligned_cols=31  Identities=6%  Similarity=-0.127  Sum_probs=24.2

Q ss_pred             ceEEEEEeecCCCeEEEecccceEEEEEecCCC
Q psy6173          27 LAVKKICFCPVTGTLLIAGTAGHVILAKLSTKT   59 (137)
Q Consensus        27 lAIq~I~lCpeSr~L~VaG~sG~Vil~~f~~~e   59 (137)
                      -+|.-  |.+..++|+.|+..|.|.||.++..+
T Consensus        16 ~~V~c--~~~d~~~l~sgs~Dg~i~vWd~~~~~   46 (293)
T d1p22a2          16 KGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLE   46 (293)
T ss_dssp             CCEEE--EECCSSEEEEEESSSCEEEEESSSCC
T ss_pred             CCEEE--EEEcCCEEEEEeCCCeEEEEECCCCc
Confidence            35554  44568899999999999999987655