Psyllid ID: psy6196

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATLYIVPI
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEEEEEcEEEEEEEEEEEEEEEccccccEEEEEEEEEEEcccccccccEEEEEEEcccEEEEEcccccHHHHHHHHHHccccccccEEEEEEEccEEEEEEEcccEEEEEEEEEEEcccccccccEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEccEEEEEEcccccEEEEEEEEEEEccccccEEEEEEEEEEccccEccccEEEEEEEccccEEEEcccHHHHHHHHHHHHccHHccccEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccEEEEEEEEEcc
Coil and Loop (DISEMBL)
mgayhtldlelnrkfelskpewdslytariglkspftpavgyyyycgrniqenqyvKMGAYHTLDLELnrkfelskpewdSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIetniprkrrgyFCATLYIVPI
Flexible Loop (DISEMBL)
mgayhtldlelnrkfelskpeWDSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIetniprkrrgyfcatlyivpi
Low Complexity Region (SEG)
MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATLYIVPI
Disordered region (IsUnstruct)
******LDLELNRKFELSKPEWDSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATLYIV**
Disordered Region (DISOPRED)
****HTL*LELNR*********DSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVR*****************TLYIVPI
Disordered Region (DISEMBL)
MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATLYIVPI
Disordered Region (DISPRO)
*GAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATLYIVPI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATLYIVPI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
P48612	395	Protein pelota OS=Drosoph	yes	N/A	0.609	0.225	0.797	5e-38
Q5U567	383	Protein pelota homolog OS	N/A	N/A	0.609	0.232	0.730	3e-32
Q7ZWC4	385	Protein pelota homolog OS	yes	N/A	0.609	0.231	0.674	1e-31
Q5RCE3	385	Protein pelota homolog OS	yes	N/A	0.609	0.231	0.674	8e-31
Q9BRX2	385	Protein pelota homolog OS	yes	N/A	0.609	0.231	0.674	8e-31
Q58DV0	385	Protein pelota homolog OS	yes	N/A	0.609	0.231	0.674	8e-31
Q5XIP1	385	Protein pelota homolog OS	yes	N/A	0.609	0.231	0.662	1e-30
Q80X73	385	Protein pelota homolog OS	yes	N/A	0.609	0.231	0.662	1e-30
Q5ZK01	385	Protein pelota homolog OS	yes	N/A	0.609	0.231	0.662	2e-30
P50444	381	Uncharacterized protein R	yes	N/A	0.691	0.265	0.574	6e-25

>sp|P48612|PELO_DROME Protein pelota OS=Drosophila melanogaster GN=pelo PE=2 SV=2

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Required prior to the first meiotic division for spindle formation and nuclear envelope breakdown during spermatogenesis. It is also required for normal eye patterning and for mitotic divisions in the ovary. Required for ovarian germ line stem cell self-renewal. May play a role in regulating translation. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q5U567|PELO_XENLA Protein pelota homolog OS=Xenopus laevis GN=pelo PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/89 (73%), Positives = 77/89 (86%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G NIQENQYVKMGAYHT++LE NRKF L+K +WDSI LERIE AC+   +ADVAAV+MQE
Sbjct: 85  GINIQENQYVKMGAYHTIELEPNRKFTLAKKQWDSIVLERIEQACDPAFSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA+I L+T SM+L+R KIET+IPRKRRG
Sbjct: 145 GLAHICLVTPSMTLLRAKIETSIPRKRRG 173

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q7ZWC4|PELO_DANRE Protein pelota homolog OS=Danio rerio GN=pelo PE=2 SV=1

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 76/89 (85%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G NIQENQYVKMGAYHT++LELNRKF L+K  WDS+ L+RIE AC+  + ADVAAV+MQE
Sbjct: 85  GTNIQENQYVKMGAYHTIELELNRKFTLAKKVWDSVVLDRIEQACDPAQKADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLAN++L+T +M+L+R K+E  IPRKR+G
Sbjct: 145 GLANLVLVTPAMTLLRAKVEVTIPRKRKG 173

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5RCE3|PELO_PONAB Protein pelota homolog OS=Pongo abelii GN=PELO PE=2 SV=1

 Score =  132 bits (332), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 75/89 (84%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct: 85  GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9BRX2|PELO_HUMAN Protein pelota homolog OS=Homo sapiens GN=PELO PE=1 SV=2

 Score =  132 bits (332), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 75/89 (84%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct: 85  GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q58DV0|PELO_BOVIN Protein pelota homolog OS=Bos taurus GN=PELO PE=2 SV=2

 Score =  132 bits (331), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 75/89 (84%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct: 85  GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5XIP1|PELO_RAT Protein pelota homolog OS=Rattus norvegicus GN=Pelo PE=2 SV=1

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 75/89 (84%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct: 85  GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q80X73|PELO_MOUSE Protein pelota homolog OS=Mus musculus GN=Pelo PE=2 SV=3

 Score =  131 bits (330), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 75/89 (84%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct: 85  GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173

Required for normal chromosome segregation during cell division and genomic stability. May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q5ZK01|PELO_CHICK Protein pelota homolog OS=Gallus gallus GN=PELO PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 74/89 (83%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+    ADVAAV+MQE
Sbjct: 85  GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWNADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct: 145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173

Required for normal chromosome segregation during cell division and genomic stability (By similarity). May function in recognizing stalled ribosomes and triggering endonucleolytic cleavage of the mRNA, a mechanism to release non-functional ribosomes and degrade damaged mRNAs. May have ribonuclease activity.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P50444|YNU6_CAEEL Uncharacterized protein R74.6 OS=Caenorhabditis elegans GN=R74.6 PE=3 SV=1

 Score =  112 bits (281), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/101 (57%), Positives = 74/101 (73%)

Query: 36  FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEK 95
           F P     +  GRNI+EN  VK+GAYHT+DLE NRKF L K EWDSI LER+ +A +  +
Sbjct: 74  FDPGAQELHLKGRNIEENDIVKLGAYHTIDLEPNRKFTLQKTEWDSIDLERLNLALDPAQ 133

Query: 96  TADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGY 136
            ADVAAV++ EGLAN+ LIT +M+L R KI+  IPRKR+G+
Sbjct: 134 AADVAAVVLHEGLANVCLITPAMTLTRAKIDMTIPRKRKGF 174

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
195063312	394	GH25139 [Drosophila grimshawi] gi|193895	0.609	0.225	0.808	1e-36
195438391	396	GK24186 [Drosophila willistoni] gi|19416	0.609	0.224	0.797	3e-36
17136914	395	pelota [Drosophila melanogaster] gi|8570	0.609	0.225	0.797	3e-36
195147042	394	GL18928 [Drosophila persimilis] gi|19410	0.609	0.225	0.797	3e-36
125985205	394	GA17805 [Drosophila pseudoobscura pseudo	0.609	0.225	0.797	3e-36
195473349	394	GE18863 [Drosophila yakuba] gi|194175059	0.609	0.225	0.797	3e-36
973224	395	pelota [Drosophila melanogaster]	0.609	0.225	0.797	3e-36
195577887	394	GD23623 [Drosophila simulans] gi|1941908	0.609	0.225	0.797	4e-36
195339511	394	GM17647 [Drosophila sechellia] gi|194130	0.609	0.225	0.797	4e-36
194859216	392	GG10049 [Drosophila erecta] gi|190661199	0.609	0.227	0.797	4e-36

>gi|195063312|ref|XP_001996357.1| GH25139 [Drosophila grimshawi] gi|193895222|gb|EDV94088.1| GH25139 [Drosophila grimshawi]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 72/89 (80%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLAN+ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLANVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195438391|ref|XP_002067120.1| GK24186 [Drosophila willistoni] gi|194163205|gb|EDW78106.1| GK24186 [Drosophila willistoni]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPSQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136914|ref|NP_476982.1| pelota [Drosophila melanogaster] gi|85701378|sp|P48612.2|PELO_DROME RecName: Full=Protein pelota gi|7297544|gb|AAF52799.1| pelota [Drosophila melanogaster] gi|16198139|gb|AAL13873.1| LD34262p [Drosophila melanogaster] gi|220946020|gb|ACL85553.1| CG3959-PA [synthetic construct] gi|220955770|gb|ACL90428.1| pelo-PA [synthetic construct]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195147042|ref|XP_002014489.1| GL18928 [Drosophila persimilis] gi|194106442|gb|EDW28485.1| GL18928 [Drosophila persimilis]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125985205|ref|XP_001356366.1| GA17805 [Drosophila pseudoobscura pseudoobscura] gi|54644689|gb|EAL33429.1| GA17805 [Drosophila pseudoobscura pseudoobscura]

 Score =  156 bits (394), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195473349|ref|XP_002088958.1| GE18863 [Drosophila yakuba] gi|194175059|gb|EDW88670.1| GE18863 [Drosophila yakuba]

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|973224|gb|AAC46879.1| pelota [Drosophila melanogaster]

 Score =  155 bits (393), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195577887|ref|XP_002078800.1| GD23623 [Drosophila simulans] gi|194190809|gb|EDX04385.1| GD23623 [Drosophila simulans]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195339511|ref|XP_002036363.1| GM17647 [Drosophila sechellia] gi|194130243|gb|EDW52286.1| GM17647 [Drosophila sechellia]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194859216|ref|XP_001969332.1| GG10049 [Drosophila erecta] gi|190661199|gb|EDV58391.1| GG10049 [Drosophila erecta]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct: 85  GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
           GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct: 145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
FB|FBgn0011207	395	pelo "pelota" [Drosophila mela	0.609	0.225	0.797	3.6e-34
ZFIN|ZDB-GENE-040426-1074	385	pelo "pelota homolog (Drosophi	0.609	0.231	0.674	3.4e-29
UNIPROTKB|Q58DV0	385	PELO "Protein pelota homolog"	0.609	0.231	0.674	1.5e-28
UNIPROTKB|Q9BRX2	385	PELO "Protein pelota homolog"	0.609	0.231	0.674	1.5e-28
UNIPROTKB|F2Z5N9	385	PELO "Uncharacterized protein"	0.609	0.231	0.674	1.5e-28
MGI|MGI:2145154	385	Pelo "pelota homolog (Drosophi	0.609	0.231	0.662	1.9e-28
RGD|1359591	385	Pelo "pelota homolog (Drosophi	0.609	0.231	0.662	1.9e-28
UNIPROTKB|H9L2N7	361	PELO "Protein pelota homolog"	0.609	0.246	0.662	2.4e-28
UNIPROTKB|H9L2N8	384	PELO "Protein pelota homolog"	0.609	0.231	0.662	2.4e-28
UNIPROTKB|Q5ZK01	385	PELO "Protein pelota homolog"	0.609	0.231	0.662	2.4e-28

FB|FBgn0011207 pelo "pelota" [Drosophila melanogaster (taxid:7227)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 71/89 (79%), Positives = 84/89 (94%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             GRNI+ENQYVKMGAYHTLDLELNRKFEL KPEWD+IALERIE+AC+  ++ADVAAV+MQE
Sbjct:    85 GRNIEENQYVKMGAYHTLDLELNRKFELRKPEWDTIALERIEMACDPTQSADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA++ LITASM+LVR+KIE +IPRKR+G
Sbjct:   145 GLAHVCLITASMTLVRSKIEVSIPRKRKG 173

GO:0007283 "spermatogenesis" evidence=NAS;IMP

GO:0007140 "male meiosis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0051078 "meiotic nuclear envelope disassembly" evidence=IMP

GO:0048137 "spermatocyte division" evidence=IMP

GO:0000212 "meiotic spindle organization" evidence=IMP

GO:0007126 "meiosis" evidence=IMP

GO:0006412 "translation" evidence=ISS

GO:0008315 "meiotic G2/MI transition" evidence=TAS

GO:0007141 "male meiosis I" evidence=TAS

GO:0048749 "compound eye development" evidence=NAS

GO:0007054 "spindle assembly involved in male meiosis I" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0007067 "mitosis" evidence=NAS

GO:0048132 "female germ-line stem cell division" evidence=IMP

GO:0030718 "germ-line stem cell maintenance" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-040426-1074 pelo "pelota homolog (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
 Identities = 60/89 (67%), Positives = 76/89 (85%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQENQYVKMGAYHT++LELNRKF L+K  WDS+ L+RIE AC+  + ADVAAV+MQE
Sbjct:    85 GTNIQENQYVKMGAYHTIELELNRKFTLAKKVWDSVVLDRIEQACDPAQKADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLAN++L+T +M+L+R K+E  IPRKR+G
Sbjct:   145 GLANLVLVTPAMTLLRAKVEVTIPRKRKG 173

GO:0016787 "hydrolase activity" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q58DV0 PELO "Protein pelota homolog" [Bos taurus (taxid:9913)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 60/89 (67%), Positives = 75/89 (84%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct:    85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct:   145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

UNIPROTKB|Q9BRX2 PELO "Protein pelota homolog" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 60/89 (67%), Positives = 75/89 (84%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct:    85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct:   145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|F2Z5N9 PELO "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 60/89 (67%), Positives = 75/89 (84%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct:    85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA+I L+T SM+L R K+E NIPRKR+G
Sbjct:   145 GLAHICLVTPSMTLTRAKVEVNIPRKRKG 173

GO:0051276 "chromosome organization" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

MGI|MGI:2145154 Pelo "pelota homolog (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 59/89 (66%), Positives = 75/89 (84%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct:    85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct:   145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173

GO:0003674 "molecular_function" evidence=ND

GO:0004518 "nuclease activity" evidence=IEA

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008283 "cell proliferation" evidence=IMP

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051276 "chromosome organization" evidence=IMP

GO:0051301 "cell division" evidence=IEA

RGD|1359591 Pelo "pelota homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
 Identities = 59/89 (66%), Positives = 75/89 (84%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+   +ADVAAV+MQE
Sbjct:    85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWSADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct:   145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173

GO:0004519 "endonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|H9L2N7 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/89 (66%), Positives = 74/89 (83%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+    ADVAAV+MQE
Sbjct:    85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWNADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct:   145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

UNIPROTKB|H9L2N8 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/89 (66%), Positives = 74/89 (83%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+    ADVAAV+MQE
Sbjct:    85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWNADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct:   145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173

GO:0008283 "cell proliferation" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

UNIPROTKB|Q5ZK01 PELO "Protein pelota homolog" [Gallus gallus (taxid:9031)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 59/89 (66%), Positives = 74/89 (83%)

Query:    47 GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
             G NIQEN+YVKMGAYHT++LE NR+F L+K +WDS+ LERIE AC+    ADVAAV+MQE
Sbjct:    85 GTNIQENEYVKMGAYHTIELEPNRQFTLAKKQWDSVVLERIEQACDPAWNADVAAVVMQE 144

Query:   107 GLANIMLITASMSLVRTKIETNIPRKRRG 135
             GLA++ L+T SM+L R K+E NIPRKR+G
Sbjct:   145 GLAHVCLVTPSMTLTRAKVEVNIPRKRKG 173

GO:0004519 "endonuclease activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7ZWC4	PELO_DANRE	3, ., 1, ., -, ., -	0.6741	0.6095	0.2311	yes	N/A
Q5XIP1	PELO_RAT	3, ., 1, ., -, ., -	0.6629	0.6095	0.2311	yes	N/A
Q9BRX2	PELO_HUMAN	3, ., 1, ., -, ., -	0.6741	0.6095	0.2311	yes	N/A
Q5ZK01	PELO_CHICK	3, ., 1, ., -, ., -	0.6629	0.6095	0.2311	yes	N/A
Q5RCE3	PELO_PONAB	3, ., 1, ., -, ., -	0.6741	0.6095	0.2311	yes	N/A
Q80X73	PELO_MOUSE	3, ., 1, ., -, ., -	0.6629	0.6095	0.2311	yes	N/A
P48612	PELO_DROME	3, ., 1, ., -, ., -	0.7977	0.6095	0.2253	yes	N/A
Q58DV0	PELO_BOVIN	3, ., 1, ., -, ., -	0.6741	0.6095	0.2311	yes	N/A
P50444	YNU6_CAEEL	No assigned EC number	0.5742	0.6917	0.2650	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	146
COG1537	352	COG1537, PelA, Predicted RNA-binding proteins [Gen	2e-21
pfam03463	133	pfam03463, eRF1_1, eRF1 domain 1	7e-17
TIGR00111	351	TIGR00111, pelota, mRNA surveillance protein pelot	7e-14
pfam03464	129	pfam03464, eRF1_2, eRF1 domain 2	6e-07
pfam03463	133	pfam03463, eRF1_1, eRF1 domain 1	5e-05

>gnl|CDD|224454 COG1537, PelA, Predicted RNA-binding proteins [General function prediction only]

 Score = 87.7 bits (218), Expect = 2e-21
 Identities = 29/96 (30%), Positives = 50/96 (52%)

Query: 41  GYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVA 100
                 G  ++  + V  G+YHT+++ +  + E+ K EW+   LER++ A    K  +VA
Sbjct: 76  NRLRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKDQLERLKEAVEASKRPEVA 135

Query: 101 AVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGY 136
            V++ EG A I ++     ++  KI + IP KR G 
Sbjct: 136 IVVVDEGEAAIAIVRDYGIIILGKIRSGIPGKREGD 171

Length = 352

>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1

 Score = 71.5 bits (176), Expect = 7e-17
 Identities = 24/58 (41%), Positives = 31/58 (53%)

Query: 36  FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNI 93
           F P  G   +CG  I+EN+  K+G YHTLD+E  R   +SK  WDS  L  +  A   
Sbjct: 76  FDPENGLLRFCGTIIEENEDGKLGKYHTLDIEPPRPITISKYRWDSKFLTELLEAMLE 133

The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification. Length = 133

>gnl|CDD|129217 TIGR00111, pelota, mRNA surveillance protein pelota

 Score = 66.8 bits (163), Expect = 7e-14
 Identities = 27/79 (34%), Positives = 44/79 (55%)

Query: 56  VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT 115
           V +G+YHTL+++      + K  W    L+R+  A  I K    AAV+M+EG+A++ L+ 
Sbjct: 93  VPVGSYHTLEIKYVYPLSIIKQNWKKWQLKRLREAVEISKRPKTAAVVMEEGIAHVGLVR 152

Query: 116 ASMSLVRTKIETNIPRKRR 134
                   KIE ++P K+R
Sbjct: 153 QYSVEEIQKIEYHMPGKKR 171

This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation [Protein synthesis, Translation factors]. Length = 351

>gnl|CDD|217575 pfam03464, eRF1_2, eRF1 domain 2

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 98  DVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRR 134
           D  A++M EG A I L+T     +  KI   +P K  
Sbjct: 1   DYGAIVMDEGEALIGLLTGYGIEILGKITVGLPGKHG 37

The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification. Length = 129

>gnl|CDD|217574 pfam03463, eRF1_1, eRF1 domain 1

 Score = 40.3 bits (95), Expect = 5e-05
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 1   MGAYHTLDLELNRKFELSKPEWDS 24
           +G YHTLD+E  R   +SK  WDS
Sbjct: 98  LGKYHTLDIEPPRPITISKYRWDS 121

The release factor eRF1 terminates protein biosynthesis by recognising stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site. This family also includes other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification. Length = 133

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
KOG2869|consensus	379		100.0
TIGR00111	351	pelota probable translation factor pelota. This mo	99.97
COG1537	352	PelA Predicted RNA-binding proteins [General funct	99.97
PF03463	132	eRF1_1: eRF1 domain 1; InterPro: IPR005140 This do	99.76
TIGR00108	409	eRF peptide chain release factor eRF/aRF, subunit	99.62
PRK04011	411	peptide chain release factor 1; Provisional	99.43
TIGR03676	403	aRF1/eRF1 peptide chain release factor 1, archaeal	99.42
KOG2869|consensus	379		98.91
PF03464	133	eRF1_2: eRF1 domain 2; InterPro: IPR005141 This do	98.72
TIGR00111	351	pelota probable translation factor pelota. This mo	98.32
COG1537	352	PelA Predicted RNA-binding proteins [General funct	97.99
TIGR00108	409	eRF peptide chain release factor eRF/aRF, subunit	95.58
TIGR03676	403	aRF1/eRF1 peptide chain release factor 1, archaeal	94.87
KOG0688|consensus	431		92.05
PRK04011	411	peptide chain release factor 1; Provisional	91.8
COG1503	411	eRF1 Peptide chain release factor 1 (eRF1) [Transl	82.68

>KOG2869|consensus

Probab=100.00  E-value=2.4e-34  Score=240.02  Aligned_cols=129  Identities=46%  Similarity=0.693  Sum_probs=113.7

Q ss_pred             CceEEEEcCCc---ChhHH--Hhccc---ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHH
Q psy6196          12 NRKFELSKPEW---DSLYT--ARIGL---KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIA   83 (146)
Q Consensus        12 ~~~ftl~K~~w---d~~~~--~~L~~---~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~   83 (146)
                      .+.+++++++-   .+-..  ..|++   .++||+.++.||++|+++++||+|++|+||||+|++|++|++.|++||+++
T Consensus        42 ~T~rkvq~e~a~G~~~s~rv~~~L~i~VesidfD~~~~~L~~KGrti~eNe~Vk~GaYHTidlel~r~FtL~K~ewds~a  121 (379)
T KOG2869|consen   42 STIRKVQKEEATGKTKSSRVLLKLKIKVESIDFDTKACVLRLKGRTIEENEYVKMGAYHTIDLELNRPFTLRKEEWDSMA  121 (379)
T ss_pred             EEEEEeeeccccCcccceEEEEEEEEEEEEeeccccccEEEEeeeeeeecccccccceeEEEeccCCceEEEhhhchHHH
Confidence            34566666643   11122  23333   889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcccCCccEEEEEEecCeEEEEEEecceeEEEEEEEeeCCCccCCCCCcce
Q psy6196          84 LERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATL  141 (146)
Q Consensus        84 le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~~~~~~~  141 (146)
                      +++|++||++..++++|+|+|+||.|+|||++.++|..+++|+.+|||||++ +++|+
T Consensus       122 l~~l~~A~dp~~~ad~aaVvlqEGla~IcLvt~s~tilr~kIe~siPrKr~~-~~s~~  178 (379)
T KOG2869|consen  122 LKLLKEACDPAPSADVAAVVLQEGLAHICLVTKSSTILRAKIEVSIPRKRKG-DVSQH  178 (379)
T ss_pred             HHHHHHhhCcccccceeeeehhcCceeEEEechhHHHHHHhhhcccccccCc-chhHH
Confidence            9999999999999999999999999999999999999999999999999755 77765

>TIGR00111 pelota probable translation factor pelota

Probab=99.97  E-value=3e-31  Score=224.78  Aligned_cols=109  Identities=29%  Similarity=0.475  Sum_probs=102.8

Q ss_pred             HHhccc---ccCCCCCceEEEEEeEEeeeC-cccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEE
Q psy6196          27 TARIGL---KSPFTPAVGYYYYCGRNIQEN-QYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAV  102 (146)
Q Consensus        27 ~~~L~~---~vef~~~~~~LRI~G~i~~~~-e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v  102 (146)
                      +++|++   +++|||++++|||+|+|+++| ++|++|+|||++|+||++|+|+|.+|+++++++|++||+++.++++++|
T Consensus        60 ~~~l~i~Ve~ief~~~~~~Lri~G~i~~~~e~~v~~G~~HTl~ie~~~~i~i~K~~w~~~~le~L~ea~~~~~~~~~~~v  139 (351)
T TIGR00111        60 TVKLGIEVESVEFDMKTERLRYKGVIVTGPEDDVPVGSYHTLEIKYVYPLSIIKQNWKKWQLKRLREAVEISKRPKTAAV  139 (351)
T ss_pred             EEEEEEEEEEEEecCCCCEEEEEEEEecCCcccccccceEEEEEcCCCcEEEEEecCCHHHHHHHHHHhccccCCcEEEE
Confidence            344454   999999999999999999998 8999999999999999999999988999999999999999999999999


Q ss_pred             EEecCeEEEEEEecceeEEEEEEEeeCCCccCC
Q psy6196         103 MMQEGLANIMLITASMSLVRTKIETNIPRKRRG  135 (146)
Q Consensus       103 ~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~  135 (146)
                      +||+|+|+||+|++++++++++++.++|||+++
T Consensus       140 v~d~g~A~i~ll~~~~~~~~~~i~~~iP~K~~~  172 (351)
T TIGR00111       140 VMEEGIAHVGLVRQYSVEEIQKIEYHMPGKKRT  172 (351)
T ss_pred             EEeCCcEEEEEEcCCEEEEEEEEEEeCCCCccc
Confidence            999999999999999999999999999999753

This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.

>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]

Probab=99.97  E-value=2.4e-31  Score=223.95  Aligned_cols=109  Identities=29%  Similarity=0.492  Sum_probs=103.9

Q ss_pred             HHhccc---ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEE
Q psy6196          27 TARIGL---KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVM  103 (146)
Q Consensus        27 ~~~L~~---~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~  103 (146)
                      ++.|++   +++||.|+++|||+|+++++|+++++|+|||++|++|++|+|+|++|++++++||+|||++++++++++|+
T Consensus        59 ~m~L~IkVe~ieF~~f~nrLRi~G~i~~~~e~~~~G~yHTi~v~~g~~i~I~K~~W~~~~lerLkeA~~~~~~~~~~~v~  138 (352)
T COG1537          59 PMTLGIKVEKIEFDKFANRLRIKGPIVEGPEEVVKGSYHTINVTIGTEIEIEKEEWNKDQLERLKEAVEASKRPEVAIVV  138 (352)
T ss_pred             EEEEEEEEEEEEeeecccEEEEEEEEEEcCcccccccceEEEeccCceEEEEEccCCHHHHHHHHHHhhcccCCceEEEE
Confidence            445554   89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCeEEEEEEecceeEEEEEEEeeCCCccCC
Q psy6196         104 MQEGLANIMLITASMSLVRTKIETNIPRKRRG  135 (146)
Q Consensus       104 ~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~  135 (146)
                      ||||+|+||+|++||+.++++++.++|+|+.+
T Consensus       139 ~degea~i~iv~~ygi~~~~~i~~~~~gK~~~  170 (352)
T COG1537         139 VDEGEAAIAIVRDYGIIILGKIRSGIPGKREG  170 (352)
T ss_pred             EecCceEEEEEeccceEEEEEEeccCCCCccc
Confidence            99999999999999999999999999999755

>PF03463 eRF1_1: eRF1 domain 1; InterPro: IPR005140 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre

Probab=99.76  E-value=5.8e-19  Score=131.19  Aligned_cols=60  Identities=42%  Similarity=0.716  Sum_probs=58.9

Q ss_pred             ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhc
Q psy6196          33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN   92 (146)
Q Consensus        33 ~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~   92 (146)
                      +++|+|+++.|||+|+|+++|+++++|+|||++|+||++|+|+|..||+.++++|+|||+
T Consensus        72 ~v~~~~~~~~Lri~G~i~~~~~~~~~G~~hT~~i~~~~~~ti~K~~wd~~~~~~l~ea~~  131 (132)
T PF03463_consen   72 KVEFDPENGLLRISGKIVEENEDVKLGKYHTLDIEPGRPFTIIKYRWDSYFLDRLKEAMD  131 (132)
T ss_dssp             EEEEETTTTEEEEEEEEEEGSCGGGTTSEEEEEEETSSEEEEEEEEEEHHHHHHHHHHTS
T ss_pred             EeEecCCCCEEEEEeEEccCCCCCCcceEEEEEEeCCCceEEEEecCCHHHHHHHHHHhc
Confidence            899999999999999999999999999999999999999999999999999999999996

The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins for which the precise molecular function is unknown. Many of them are from Archaebacteria. These proteins may also be involved in translation termination but this awaits experimental verification.; PDB: 2VGN_A 2VGM_A 3J16_A 3IZQ 3AGK_A 3AGJ_B 3OBW_A 3E1Y_D 1DT9_A 2LLX_A ....

>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1

Probab=99.62  E-value=6.3e-15  Score=127.51  Aligned_cols=100  Identities=16%  Similarity=0.141  Sum_probs=88.3

Q ss_pred             CCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcC-CCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEE
Q psy6196          35 PFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKP-EWDSIALERIEVACNIEKTADVAAVMMQEGLANIML  113 (146)
Q Consensus        35 ef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~-~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~l  113 (146)
                      .--|..+.+++.|.+..++..   |+|||++|+|+++|+++|. +|++++++.|++|++.  .+.+++|+||+|.|.||+
T Consensus        78 ~~~p~nglv~~~G~v~~~~~~---~~~~t~~iep~~pi~~~~y~~d~~f~le~L~e~~~~--~~~~g~VvvD~~~A~i~~  152 (409)
T TIGR00108        78 NKPPENGLVIFCGMVPREGPT---EKMETYVIEPPEPIKTYIYHCDSKFYLEPLSEMLEE--KDKYGLIVLDRQEATIGL  152 (409)
T ss_pred             CCCCCCcEEEEEeEeccCCCc---ccEEEEEEeCCCceEEEEEccCChhHHHHHHHHhcC--CCCEEEEEEecCCEEEEE
Confidence            445778999999999887743   8999999999999999996 5779999999999986  469999999999999999


Q ss_pred             EecceeEEEEEEEeeCCCccCCCCCc
Q psy6196         114 ITASMSLVRTKIETNIPRKRRGYFCA  139 (146)
Q Consensus       114 v~~~~~~~~~~i~~~ipkK~~~~~~~  139 (146)
                      +++++++++++++.++|||++..+.|
T Consensus       153 l~g~~~~~~~~i~~~vp~K~~~GGqS  178 (409)
T TIGR00108       153 VKGKRITVLKKLTSGVPGKHKAGGQS  178 (409)
T ss_pred             EcCCEEEEEEEEeeeCCCcccCCCcc
Confidence            99999999999999999997533433

Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.

>PRK04011 peptide chain release factor 1; Provisional

Probab=99.43  E-value=1.9e-12  Score=112.25  Aligned_cols=100  Identities=15%  Similarity=0.086  Sum_probs=84.5

Q ss_pred             CCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCC-CChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEEe
Q psy6196          37 TPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPE-WDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT  115 (146)
Q Consensus        37 ~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~-Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~  115 (146)
                      -|..+..=+.|.+..+.+  +-|.|||++|+|+++|+++|.. |+.+++++|+++++.  ++.+++|+||.|.|.||+++
T Consensus        83 ~p~nGl~~f~g~~~~~~~--~~~~~~t~~i~p~~~i~~~~y~~d~~f~le~L~e~~~~--~~~~~~VvvD~~~A~i~~l~  158 (411)
T PRK04011         83 PPENGLVIFCGAVPIGGP--GTEDMETYVIEPPEPVPTFFYRCDSEFHTEPLEDMLED--KEVYGLIVVDRREATIGLLK  158 (411)
T ss_pred             CCCCeEEEEEeecccCCC--CCceEEEEEEcCCCccEEEEecCCcHHHHHHHHHHhcC--CCCEEEEEEecCceEEEEEe
Confidence            456777778888776431  2389999999999999999975 555999999999985  88999999999999999999


Q ss_pred             cceeEEEEEEEeeCCCccCCCCCcc
Q psy6196         116 ASMSLVRTKIETNIPRKRRGYFCAT  140 (146)
Q Consensus       116 ~~~~~~~~~i~~~ipkK~~~~~~~~  140 (146)
                      +++++++++++.++|+|++..+.|+
T Consensus       159 g~~~~~~~~i~~~vp~K~~~GG~S~  183 (411)
T PRK04011        159 GKRIEVLKELTSFVPGKHRKGGQSA  183 (411)
T ss_pred             CCEEEEEEEEEeeCCCCccCCCcch
Confidence            9999999999999999976334444

>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms

Probab=99.42  E-value=3.3e-12  Score=110.55  Aligned_cols=99  Identities=15%  Similarity=0.099  Sum_probs=83.2

Q ss_pred             CCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcC-CCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEEe
Q psy6196          37 TPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKP-EWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT  115 (146)
Q Consensus        37 ~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~-~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~  115 (146)
                      -|..+-.-..|.+..+.   +-.+|||++++|+++|+++|. +|++++++.|+++++.  ++.+++|+||+|.|.||+++
T Consensus        76 ~p~nGlv~f~g~~~~~~---~~~~~~t~~iep~~pi~~~~y~cd~~f~lepL~e~l~~--~~~~g~VvvD~~~A~i~~l~  150 (403)
T TIGR03676        76 PPENGLVLFAGMVPTGG---GTEKMETYVIEPPEPINTYLYRCDSKFYLEPLEEMLEE--KDVYGLIVLDRREATIGLLK  150 (403)
T ss_pred             CCCCeEEEEEeeecCCC---CceeEEEEEEeCCCceEEEEecCCChHHHHHHHHHhcC--CCCEEEEEEecCceEEEEEc
Confidence            35666666678877643   225899999999999999996 5779999999999985  68999999999999999999


Q ss_pred             cceeEEEEEEEeeCCCccCCCCCcc
Q psy6196         116 ASMSLVRTKIETNIPRKRRGYFCAT  140 (146)
Q Consensus       116 ~~~~~~~~~i~~~ipkK~~~~~~~~  140 (146)
                      +++++++++++..+|||++..+.|+
T Consensus       151 g~~~e~~~~i~~~vp~K~~~GGqS~  175 (403)
T TIGR03676       151 GKRIEVLKELTSGVPGKHRAGGQSA  175 (403)
T ss_pred             CCEEEEEEEEEeeCCCCccCCCcch
Confidence            9999999999999999975334443

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.

>KOG2869|consensus

Probab=98.91  E-value=8.2e-10  Score=93.28  Aligned_cols=43  Identities=47%  Similarity=0.711  Sum_probs=38.9

Q ss_pred             CCceEEEEeecCceEEEEcCCcChhHHHhcccccCCCCCceEE
Q psy6196           1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPFTPAVGYY   43 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~vef~~~~~~L   43 (146)
                      ||+|||++|++|++|||+|++||+++.++|+++.+-.+.++.-
T Consensus        96 ~GaYHTidlel~r~FtL~K~ewds~al~~l~~A~dp~~~ad~a  138 (379)
T KOG2869|consen   96 MGAYHTIDLELNRPFTLRKEEWDSMALKLLKEACDPAPSADVA  138 (379)
T ss_pred             ccceeEEEeccCCceEEEhhhchHHHHHHHHHhhCccccccee
Confidence            7999999999999999999999999999999988877666543

>PF03464 eRF1_2: eRF1 domain 2; InterPro: IPR005141 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre

Probab=98.72  E-value=2.4e-08  Score=73.98  Aligned_cols=43  Identities=33%  Similarity=0.397  Sum_probs=37.2

Q ss_pred             cEEEEEEecCeEEEEEEecceeEEEEEEEeeCCCccCCCCCcc
Q psy6196          98 DVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCAT  140 (146)
Q Consensus        98 ~v~~v~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~~~~~~  140 (146)
                      ++++|+||+|+|+||++++++++++++|+.++|+|+...+.|+
T Consensus         1 ~v~~v~id~g~A~i~~l~~~~~~~~~~i~~~ip~K~~~Gg~s~   43 (133)
T PF03464_consen    1 KVGIVVIDEGEANICLLRGYGTEILQRIESNIPGKHKKGGQSQ   43 (133)
T ss_dssp             EEEEEEEETTEEEEEEEETTEEEEEEEEE-GHCCCSSTTCSHH
T ss_pred             CEEEEEEeCCCEEEEEEcCCEEEEEEEEEecCCCccCCCCcch
Confidence            5899999999999999999999999999999999986434443

The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination ; PDB: 3AGK_A 2VGN_A 2VGM_A 3J16_A 3IZQ 3IR9_A 3OBW_A 3MCA_B 2QI2_A 3E1Y_D ....

>TIGR00111 pelota probable translation factor pelota

Probab=98.32  E-value=3.4e-07  Score=78.03  Aligned_cols=35  Identities=23%  Similarity=0.489  Sum_probs=32.8

Q ss_pred             CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196           1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP   35 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve   35 (146)
                      +|+|||++|+++++|+|+|.+||+++.++|+.+++
T Consensus        95 ~G~~HTl~ie~~~~i~i~K~~w~~~~le~L~ea~~  129 (351)
T TIGR00111        95 VGSYHTLEIKYVYPLSIIKQNWKKWQLKRLREAVE  129 (351)
T ss_pred             ccceEEEEEcCCCcEEEEEecCCHHHHHHHHHHhc
Confidence            69999999999999999999999999999997555

This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.

>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]

Probab=97.99  E-value=3.9e-06  Score=71.62  Aligned_cols=36  Identities=25%  Similarity=0.522  Sum_probs=33.1

Q ss_pred             CCceEEEEeecCceEEEEcCCcChhHHHhcccccCC
Q psy6196           1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPF   36 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~vef   36 (146)
                      +|+|||++++++++|+|+|+.|+.+..++|+.+++=
T Consensus        93 ~G~yHTi~v~~g~~i~I~K~~W~~~~lerLkeA~~~  128 (352)
T COG1537          93 KGSYHTINVTIGTEIEIEKEEWNKDQLERLKEAVEA  128 (352)
T ss_pred             cccceEEEeccCceEEEEEccCCHHHHHHHHHHhhc
Confidence            699999999999999999999999999999974443

>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1

Probab=95.58  E-value=0.018  Score=50.22  Aligned_cols=35  Identities=9%  Similarity=-0.093  Sum_probs=30.9

Q ss_pred             CceEEEEeecCceEEEEc-CCcChhHHHhcccccCC
Q psy6196           2 GAYHTLDLELNRKFELSK-PEWDSLYTARIGLKSPF   36 (146)
Q Consensus         2 g~~ht~~~~~~~~ftl~K-~~wd~~~~~~L~~~vef   36 (146)
                      |+|||+++++++|+++.| .+|++++.+.|...++-
T Consensus        99 ~~~~t~~iep~~pi~~~~y~~d~~f~le~L~e~~~~  134 (409)
T TIGR00108        99 EKMETYVIEPPEPIKTYIYHCDSKFYLEPLSEMLEE  134 (409)
T ss_pred             ccEEEEEEeCCCceEEEEEccCChhHHHHHHHHhcC
Confidence            689999999999999999 57889999999975553

Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.

>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms

Probab=94.87  E-value=0.041  Score=48.03  Aligned_cols=33  Identities=9%  Similarity=-0.065  Sum_probs=29.5

Q ss_pred             ceEEEEeecCceEEEEc-CCcChhHHHhcccccC
Q psy6196           3 AYHTLDLELNRKFELSK-PEWDSLYTARIGLKSP   35 (146)
Q Consensus         3 ~~ht~~~~~~~~ftl~K-~~wd~~~~~~L~~~ve   35 (146)
                      +|||+++++++||+++| .||++++.+.|...++
T Consensus        96 ~~~t~~iep~~pi~~~~y~cd~~f~lepL~e~l~  129 (403)
T TIGR03676        96 KMETYVIEPPEPINTYLYRCDSKFYLEPLEEMLE  129 (403)
T ss_pred             eEEEEEEeCCCceEEEEecCCChHHHHHHHHHhc
Confidence            79999999999999999 5777999999997554

Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.

>KOG0688|consensus

Probab=92.05  E-value=0.48  Score=40.95  Aligned_cols=78  Identities=14%  Similarity=0.127  Sum_probs=58.3

Q ss_pred             EEEEecCCCeE--EEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEEecceeEEEEEEEeeCCCccC-CCCC
Q psy6196          62 HTLDLELNRKF--ELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRR-GYFC  138 (146)
Q Consensus        62 HTl~i~~~~~~--tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~-~~~~  138 (146)
                      -++++||-.+|  +++= +=++++.+-|.+....  ....++++||..-+-++.+....-.++.++.+.+|||.. +..+
T Consensus       106 v~idfepfkpintslyL-cdNkfhte~l~~Ll~s--d~kfgfivmDg~~tlfgtl~gntrevLhkftVdlPkkhgrggqS  182 (431)
T KOG0688|consen  106 VNIDFEPFKPINTSLYL-CDNKFHTEALKELLES--DNKFGFIVMDGNGTLFGTLQGNTREVLHKFTVDLPKKHGRGGQS  182 (431)
T ss_pred             eecccccccccccceEe-cCCccchHHHHHHHhh--cccccEEEEcCCceeEEEeccchHhhhheeeecCccccCccchh
Confidence            35666776665  3332 4567778888876644  447899999999999999999999999999999999953 4344


Q ss_pred             ccee
Q psy6196         139 ATLY  142 (146)
Q Consensus       139 ~~~~  142 (146)
                      +++|
T Consensus       183 alrf  186 (431)
T KOG0688|consen  183 ALRF  186 (431)
T ss_pred             HHhh
Confidence            4443

>PRK04011 peptide chain release factor 1; Provisional

Probab=91.80  E-value=0.22  Score=43.57  Aligned_cols=34  Identities=9%  Similarity=-0.206  Sum_probs=29.1

Q ss_pred             CceEEEEeecCceEEEEcC-CcChhHHHhcccccC
Q psy6196           2 GAYHTLDLELNRKFELSKP-EWDSLYTARIGLKSP   35 (146)
Q Consensus         2 g~~ht~~~~~~~~ftl~K~-~wd~~~~~~L~~~ve   35 (146)
                      |.|||+++++++|++++|. +|+.++.+.|...++
T Consensus       103 ~~~~t~~i~p~~~i~~~~y~~d~~f~le~L~e~~~  137 (411)
T PRK04011        103 EDMETYVIEPPEPVPTFFYRCDSEFHTEPLEDMLE  137 (411)
T ss_pred             ceEEEEEEcCCCccEEEEecCCcHHHHHHHHHHhc
Confidence            6899999999999999996 555599999997444

>COG1503 eRF1 Peptide chain release factor 1 (eRF1) [Translation, ribosomal structure and biogenesis]

Probab=82.68  E-value=4.9  Score=35.51  Aligned_cols=99  Identities=16%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             CCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEc-CCCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEEe
Q psy6196          37 TPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSK-PEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT  115 (146)
Q Consensus        37 ~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K-~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~  115 (146)
                      .|..+--...|.+..+-...   .-=|.-++|-.+++-.. .+=..+.++-|++...  .+....+++|+-++|.++++.
T Consensus        83 ~P~nGlv~f~g~v~~~~~~t---~~~~~~~~PP~Pi~~~ly~cDs~F~~e~L~~~l~--~~~~ygliv~dr~ea~ig~l~  157 (411)
T COG1503          83 TPENGLVLFVGDVLGGGGKT---KKVTVVIEPPEPINTFLYRCDSKFYLEPLEEMLE--DKDLYGLIVLDRIEATIGLLK  157 (411)
T ss_pred             CCCCCeEEEEeeeccCCCcc---ceeeecccCCCCcceeeeccccHHHHHHHHHHhh--hcccccEEEEecccceeeeec
Confidence            35677777888887652222   22345558888876655 2677889999999764  466789999999999999999


Q ss_pred             cceeEEEEEEEeeCCCccCCCCCcc
Q psy6196         116 ASMSLVRTKIETNIPRKRRGYFCAT  140 (146)
Q Consensus       116 ~~~~~~~~~i~~~ipkK~~~~~~~~  140 (146)
                      +....+..+++...|||++..+.|+
T Consensus       158 g~r~evl~~~~s~vpgKh~~Ggqsa  182 (411)
T COG1503         158 GKRIEVLKELTSDVPGKHRAGGQSA  182 (411)
T ss_pred             cceeeHhhhhcccCcchhhcccchH
Confidence            9999999999999999966434443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	146
3mca_B	390	Structure Of The Dom34-Hbs1 Complex And Implication		1e-24
2vgm_A	386	Structure Of Yeast Dom34 : A Protein Related To Tra		4e-10
2vgn_A	386	Structure Of Yeast Dom34 : A Protein Related To Tra		4e-10
3j15_A	357	Model Of Ribosome-Bound Archaeal Pelota And Abce1 L		5e-04

>pdb|3MCA|B Chain B, Structure Of The Dom34-Hbs1 Complex And Implications For Its Role In No-Go Decay Length = 390

Iteration: 1
 Score =  108 bits (270), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 69/100 (69%)
Query: 36  FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEK 95
           F       +  GR  + +  VKMG+YHTLDLEL+R F L K EWD+ AL+R++ ACN  +
Sbjct: 74  FDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSR 133
Query: 96  TADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135
            A++ AV++ EGLANI LIT  M+++R +I+  IPRKRRG
Sbjct: 134 NAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRG 173

>pdb|2VGM|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-Go Decay. Length = 386

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 53/82 (64%)
Query: 53  NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIM 112
           N  + +G Y +  L+    F + K  ++    + +  ACNIE  +D AAV++QEG+A++ 
Sbjct: 96  NVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEGIAHVC 155
Query: 113 LITASMSLVRTKIETNIPRKRR 134
           L+T+S ++++ KIE ++P+K+R
Sbjct: 156 LVTSSSTILKQKIEYSMPKKKR 177

>pdb|2VGN|A Chain A, Structure Of Yeast Dom34 : A Protein Related To Translation Termination Factor Erf1 And Involved In No-go Decay. Length = 386

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 52/82 (63%)
Query: 53  NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIM 112
           N  + +G Y +  L+    F + K  ++    + +  ACNIE  +D AAV++QEG+A++ 
Sbjct: 96  NVDIPVGKYLSFTLDYVYPFTIIKQNFNKFXQKLLNEACNIEYKSDTAAVVLQEGIAHVC 155
Query: 113 LITASMSLVRTKIETNIPRKRR 134
           L+T+S ++++ KIE + P+K+R
Sbjct: 156 LVTSSSTILKQKIEYSXPKKKR 177

>pdb|3J15|A Chain A, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 357

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 56  VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLIT 115
           V +G YHT+ +E      + KP W    +ER++ A    K A V  V++ +G A++ L+ 
Sbjct: 93  VPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIVVIDDGEADMALVR 152
Query: 116 ASMSLVRTKIETNIPRKR 133
                +   I  N+  KR
Sbjct: 153 EYGVEILNSIRHNLGGKR 170

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	2e-23
2vgn_A	386	DOM34; translation termination factor, protein bio	2e-20
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	3e-17
3oby_A	352	Protein pelota homolog; SM fold, hydrolase; 2.90A	3e-15
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	3e-15
2qi2_A	347	Pelota, cell division protein pelota related prote	2e-14
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	2e-12
3agk_A	373	Peptide chain release factor subunit 1; translatio	3e-10

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe} Length = 390

 Score = 92.9 bits (230), Expect = 2e-23
 Identities = 50/100 (50%), Positives = 69/100 (69%)

Query: 36  FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEK 95
           F       +  GR  + +  VKMG+YHTLDLEL+R F L K EWD+ AL+R++ ACN  +
Sbjct: 74  FDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSR 133

Query: 96  TADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135
            A++ AV++ EGLANI LIT  M+++R +I+  IPRKRRG
Sbjct: 134 NAEIGAVVLDEGLANICLITDYMTILRQRIDQVIPRKRRG 173

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A* Length = 386

 Score = 84.4 bits (208), Expect = 2e-20
 Identities = 32/105 (30%), Positives = 59/105 (56%), Gaps = 5/105 (4%)

Query: 36  FTPAVGYYYYCGRNIQE-----NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVA 90
           F     Y  Y G  + +     N  + +G Y +  L+    F + K  ++    + +  A
Sbjct: 74  FDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEA 133

Query: 91  CNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135
           CNIE  +D AAV++QEG+A++ L+T+S ++++ KIE ++P+K+R 
Sbjct: 134 CNIEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRT 178

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus} Length = 357

 Score = 75.6 bits (185), Expect = 3e-17
 Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 1/102 (0%)

Query: 36  FTPAVGYYYYCGRNIQ-ENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIE 94
           F          G  +    + V +G YHT+ +E      + KP W    +ER++ A    
Sbjct: 72  FHKFANQVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAAS 131

Query: 95  KTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGY 136
           K A V  V++ +G A++ L+      +   I  N+  KR   
Sbjct: 132 KRARVMIVVIDDGEADMALVREYGVEILNSIRHNLGGKRYNT 173

>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus} Length = 352

 Score = 70.1 bits (171), Expect = 3e-15
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 11/101 (10%)

Query: 36  FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEK 95
           F          G+ +      +   YHTL++ + ++  + K +W    LER+  A     
Sbjct: 72  FHRFANRLRVSGKIVAGI---EESGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSN 127

Query: 96  TADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGY 136
             ++  + ++EG A          ++R      I  +R GY
Sbjct: 128 RPEIVMLTIEEGYAVA-------GVLRQWGVEEIFEERMGY 161

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus} Length = 364

 Score = 70.2 bits (171), Expect = 3e-15
 Identities = 18/101 (17%), Positives = 37/101 (36%), Gaps = 3/101 (2%)

Query: 36  FTPAVGYYYYCGRNIQEN-QYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIE 94
           F          G       ++   GA+HT++L++  +  + K +W+   L+R++   N  
Sbjct: 86  FQEFTNRLRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQANKR 145

Query: 95  KTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135
               +A V   E L  I         + ++       +  G
Sbjct: 146 SRIIIALVDFDEYLIAIPFEQGIK--ILSEKSLRPLNEEEG 184

>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 Length = 347

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 2/101 (1%)

Query: 36  FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEK 95
           F          G  I+  +  K G + ++ + ++ +  ++K EWD   ++ ++ A + + 
Sbjct: 72  FQDFDNRLRILGTVIEGPEDTK-GKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKY 129

Query: 96  TADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGY 136
                AV M E  A I LI          + +    K    
Sbjct: 130 VTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYAEG 170

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix} Length = 358

 Score = 62.5 bits (151), Expect = 2e-12
 Identities = 14/102 (13%), Positives = 34/102 (33%), Gaps = 5/102 (4%)

Query: 36  FTPAVGYYYYCGRNIQ-ENQYVKMGAYHTLDLELNRKFELSKPE-WDSIALERIEVACNI 93
           F P  G     G  ++  +++   G  H+  + +     + + + W    LER+      
Sbjct: 69  FQPFTGKLRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLA--AGR 126

Query: 94  EKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135
            +   V A +  +    + ++      +       +P K   
Sbjct: 127 ARGTAVIAAVDYDE-FALAVLAGHGMKILEDTSARLPGKDDP 167

>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix} Length = 373

 Score = 56.2 bits (134), Expect = 3e-10
 Identities = 10/93 (10%), Positives = 29/93 (31%), Gaps = 1/93 (1%)

Query: 47  GRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQE 106
           G  +   + +  G +            +     D   +         +    +  ++++ 
Sbjct: 92  GLVLFCGEDMSTGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNN-AIGIIIVER 150

Query: 107 GLANIMLITASMSLVRTKIETNIPRKRRGYFCA 139
             A I L+  +   V  ++E  +P K +    +
Sbjct: 151 DQATIGLLKGARLEVLKELEGFVPGKHKMGGQS 183

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	99.96
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	99.95
3oby_A	352	Protein pelota homolog; SM fold, hydrolase; 2.90A	99.94
2vgn_A	386	DOM34; translation termination factor, protein bio	99.94
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	99.94
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	99.92
2qi2_A	347	Pelota, cell division protein pelota related prote	99.91
3e20_C	441	Eukaryotic peptide chain release factor subunit 1;	99.5
1dt9_A	437	ERF1, protein (eukaryotic peptide chain release fa	99.42
3agk_A	373	Peptide chain release factor subunit 1; translatio	99.27
3mca_B	390	Protein DOM34, elongation factor 1 alpha-like prot	98.17
3obw_A	364	Protein pelota homolog; SM fold, hydrolase; 2.60A	97.97
3j15_A	357	Protein pelota; ribosome recycling, ribosome, arch	97.94
2vgn_A	386	DOM34; translation termination factor, protein bio	97.85
3oby_A	352	Protein pelota homolog; SM fold, hydrolase; 2.90A	97.8
3agj_B	358	Protein pelota homolog; GTP binding, translation-h	97.77
2qi2_A	347	Pelota, cell division protein pelota related prote	97.63
3e20_C	441	Eukaryotic peptide chain release factor subunit 1;	95.72
3agk_A	373	Peptide chain release factor subunit 1; translatio	93.76
1dt9_A	437	ERF1, protein (eukaryotic peptide chain release fa	92.19

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.96  E-value=1.5e-30  Score=221.87  Aligned_cols=109  Identities=46%  Similarity=0.792  Sum_probs=94.3

Q ss_pred             HHhccc---ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEE
Q psy6196          27 TARIGL---KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVM  103 (146)
Q Consensus        27 ~~~L~~---~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~  103 (146)
                      +++|++   +++|||++++|||+|+|+.+|+++++|+|||++|+||++|+|+|.+||++++++|++||+++.++++++|+
T Consensus        62 ~~~L~i~Ve~ief~~~~~~Lri~G~i~~~~~~vk~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~~~~~~~~~Vv  141 (390)
T 3mca_B           62 VMKLRILVENMDFDTKAAQLHIKGRTTEYHPEVKMGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNPSRNAEIGAVV  141 (390)
T ss_dssp             -----EECCCEEECTTSSCEEEC-CBCSCCC---CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSCC--CCEEEEE
T ss_pred             EEEEEEEEEEEEecCCCCEEEEEEEEecCCccccccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcccccCcEEEEE
Confidence            444554   88999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCeEEEEEEecceeEEEEEEEeeCCCccCC
Q psy6196         104 MQEGLANIMLITASMSLVRTKIETNIPRKRRG  135 (146)
Q Consensus       104 ~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~  135 (146)
                      ||+|.|+||++++++++++++++.++|||+++
T Consensus       142 ~deg~A~i~ll~~~~~~~~~~i~~~iPkK~~~  173 (390)
T 3mca_B          142 LDEGLANICLITDYMTILRQRIDQVIPRKRRG  173 (390)
T ss_dssp             EETTEEEEEEECSSCEEEEEEEECCCCCCBTT
T ss_pred             EECCcEEEEEEcCCEEEEEEEEEEeCCCcCCC
Confidence            99999999999999999999999999999764

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}

Probab=99.95  E-value=2.4e-29  Score=212.23  Aligned_cols=108  Identities=25%  Similarity=0.394  Sum_probs=102.4

Q ss_pred             HHhccc---ccCCCCCceEEEEEeEEeeeC-cccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEE
Q psy6196          27 TARIGL---KSPFTPAVGYYYYCGRNIQEN-QYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAV  102 (146)
Q Consensus        27 ~~~L~~---~vef~~~~~~LRI~G~i~~~~-e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v  102 (146)
                      ++.|++   +++||+++++|||+|+|+++| +++++|+|||++|+||++|+|+|..|+++++++|++||+++.++++++|
T Consensus        60 ~~~l~i~Ve~~ef~~~~~~Lri~G~i~~~~~~~v~~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~~~~~~~~~~V  139 (357)
T 3j15_A           60 PVFLGVQAEKINFHKFANQVRVTGPIVYASREDVPLGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVAASKRARVMIV  139 (357)
T ss_dssp             CCCCEEECSCEEEETTTTEEEECCBEEECCCSSCCCSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCSSCCCSCCCEE
T ss_pred             EEEEEEEEEEEEecCCCCEEEEEEEEEeccccccccccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHhccccCcEEEE
Confidence            444554   889999999999999999999 9999999999999999999999988999999999999999999999999


Q ss_pred             EEecCeEEEEEEecceeEEEEEEEeeCCCccC
Q psy6196         103 MMQEGLANIMLITASMSLVRTKIETNIPRKRR  134 (146)
Q Consensus       103 ~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~  134 (146)
                      +||+|.|+||++++++++++++++.++|||++
T Consensus       140 v~d~g~A~i~~l~~~~~~~~~~i~~~ipkK~~  171 (357)
T 3j15_A          140 VIDDGEADMALVREYGVEILNSIRHNLGGKRY  171 (357)
T ss_dssp             EECSSCEEEEEEETTEEEEEECCCCCSCSSSS
T ss_pred             EEECCcEEEEEEeCCEEEEEEEEEecCCCCcc
Confidence            99999999999999999999999999999974

>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}

Probab=99.94  E-value=1.9e-27  Score=200.62  Aligned_cols=97  Identities=16%  Similarity=0.249  Sum_probs=86.1

Q ss_pred             ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEEE
Q psy6196          33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIM  112 (146)
Q Consensus        33 ~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~  112 (146)
                      +++|||++++|||+|+|+++|++   |+|||++|+||++|+|+| +|+++++++|++||+++.++++++|+||+|.|+||
T Consensus        69 ~ief~~~~~~Lri~G~i~~~~~~---G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~~~~~~~~~~vv~d~g~A~i~  144 (352)
T 3oby_A           69 KVEFHRFANRLRVSGKIVAGIEE---SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVEDSNRPEIVMLTIEEGYAVAG  144 (352)
T ss_dssp             EEEECSSSSCEEEEEEEEEC-------CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHTTSCCCCEEEEEEETTEEEEE
T ss_pred             EEEecCCCCEEEEEEEEEecCCC---CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhhccccCcEEEEEEECCcEEEE
Confidence            89999999999999999999988   999999999999999999 89999999999999999999999999999999999


Q ss_pred             EEecceeEEEEEEEeeCCCcc
Q psy6196         113 LITASMSLVRTKIETNIPRKR  133 (146)
Q Consensus       113 lv~~~~~~~~~~i~~~ipkK~  133 (146)
                      +|++++++++++++.++|||+
T Consensus       145 ~l~~~~~~~~~~i~~~ipkK~  165 (352)
T 3oby_A          145 VLRQWGVEEIFEERMGYGKGM  165 (352)
T ss_dssp             EEETTEEEEEEEEEC------
T ss_pred             EEeCCEEEEEEEEeccCCCcc
Confidence            999999999999999999986

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*

Probab=99.94  E-value=2.4e-27  Score=201.71  Aligned_cols=103  Identities=30%  Similarity=0.562  Sum_probs=93.2

Q ss_pred             ccCCCCCceEEEEEeEEeeeCcc-----cCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecC
Q psy6196          33 KSPFTPAVGYYYYCGRNIQENQY-----VKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEG  107 (146)
Q Consensus        33 ~vef~~~~~~LRI~G~i~~~~e~-----v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG  107 (146)
                      +++|||++++|||+|+|+++|++     |++|+|||++|+|+++|+++|..|+++++++|++|++++.++++++|+||+|
T Consensus        71 ~~~f~~~~~~lri~G~i~~~~~~~~~~~vk~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~  150 (386)
T 2vgn_A           71 SEDFDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACNIEYKSDTAAVVLQEG  150 (386)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTCTTTTTCEEEEEEETT
T ss_pred             EEEecCCCCEEEEEEEEEccCCccccccccCccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhccccCCCEEEEEEECC
Confidence            79999999999999999999999     9999999999999999999998899999999999999989999999999999


Q ss_pred             eEEEEEEecceeEEEEEEEeeCCCccCC
Q psy6196         108 LANIMLITASMSLVRTKIETNIPRKRRG  135 (146)
Q Consensus       108 ~A~i~lv~~~~~~~~~~i~~~ipkK~~~  135 (146)
                      .|+||++++++++++++++.++|||+++
T Consensus       151 ~A~i~~l~~~~~~~~~~i~~~iP~K~~~  178 (386)
T 2vgn_A          151 IAHVCLVTSSSTILKQKIEYSMPKKKRT  178 (386)
T ss_dssp             EEEEEEECSSCEEEEEEEEC--------
T ss_pred             cEEEEEEECCEEEEEEEEEecCCCCccC
Confidence            9999999999999999999999999865

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}

Probab=99.94  E-value=2.3e-27  Score=200.78  Aligned_cols=100  Identities=14%  Similarity=0.189  Sum_probs=82.9

Q ss_pred             ccCCCCCceEEEEEeEEeeeC-cccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEE
Q psy6196          33 KSPFTPAVGYYYYCGRNIQEN-QYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANI  111 (146)
Q Consensus        33 ~vef~~~~~~LRI~G~i~~~~-e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i  111 (146)
                      +++|||++++|||+|+|+.+| +++++|+|||++|+||++|+|+|..|+++++++|+++|+  .++++++|+||+|+|+|
T Consensus        83 ~ief~~~~~~Lri~G~iv~~~~~~v~~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~--~~~~~~~vv~d~g~A~i  160 (364)
T 3obw_A           83 YTEFQEFTNRLRIHGIIEDAPERFGIKGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQAN--KRSRIIIALVDFDEYLI  160 (364)
T ss_dssp             EEEEETTTTEEEEEEEEEECCGGGCCTTCEEEEEECTTCEEEEECSCC----------------CCCEEEEEEETTEEEE
T ss_pred             EEEecCCCCEEEEEEEEEeccccccccceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhC--cCCCEEEEEEECCcEEE
Confidence            899999999999999999987 889999999999999999999998899999999999987  57899999999999999


Q ss_pred             EEEecceeEEEEEEEeeCCCccC
Q psy6196         112 MLITASMSLVRTKIETNIPRKRR  134 (146)
Q Consensus       112 ~lv~~~~~~~~~~i~~~ipkK~~  134 (146)
                      |++++++++++++++.++|||++
T Consensus       161 ~~l~~~~~~~~~~i~~~iPkK~~  183 (364)
T 3obw_A          161 AIPFEQGIKILSEKSLRPLNEEE  183 (364)
T ss_dssp             EEECSSCEECCCEEECGGGCSST
T ss_pred             EEEeCCEEEEEEEEEeeCccchh
Confidence            99999999999999999999963

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}

Probab=99.92  E-value=8.4e-25  Score=184.34  Aligned_cols=98  Identities=12%  Similarity=0.245  Sum_probs=94.8

Q ss_pred             ccCCCCCceEEEEEeEEeeeC-cccCCCceEEEEecCCCeEEEEcCC-CChHHHHHHHHHhcccCCccEEEEEEecCeEE
Q psy6196          33 KSPFTPAVGYYYYCGRNIQEN-QYVKMGAYHTLDLELNRKFELSKPE-WDSIALERIEVACNIEKTADVAAVMMQEGLAN  110 (146)
Q Consensus        33 ~vef~~~~~~LRI~G~i~~~~-e~v~~G~yHTl~i~~~~~~tI~K~~-Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~  110 (146)
                      +++||+++++|||+|+|+++| ++|++|+|||++|+|+++|+|+|.+ |+++++++|++|   +.++++++|+||+|.|+
T Consensus        66 ~~~f~~~~~~Lri~G~i~~~~~~~v~~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~---~~~~~~~~vvvd~~~A~  142 (358)
T 3agj_B           66 SIEFQPFTGKLRISGIVVEGPDEFGVKGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG---RARGTAVIAAVDYDEFA  142 (358)
T ss_dssp             EEEECTTSCEEEEEEEEEECCGGGCCTTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC---CCCCEEEEEEECSSEEE
T ss_pred             EEEcCCCCCEEEEEEEEccCCCcccccccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh---CcCCCEEEEEEECCcEE
Confidence            799999999999999999999 8999999999999999999999976 999999999998   67889999999999999


Q ss_pred             EEEEecceeEEEEEEEeeCCCcc
Q psy6196         111 IMLITASMSLVRTKIETNIPRKR  133 (146)
Q Consensus       111 i~lv~~~~~~~~~~i~~~ipkK~  133 (146)
                      ||++++++++++++++.++|||+
T Consensus       143 i~~l~~~~~~~~~~i~~~vpkK~  165 (358)
T 3agj_B          143 LAVLAGHGMKILEDTSARLPGKD  165 (358)
T ss_dssp             EEEEESSCEEEEEEEECCCCCTT
T ss_pred             EEEEeCCEEEEEEEEEecCCCCC
Confidence            99999999999999999999997

>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2

Probab=99.91  E-value=4.9e-25  Score=185.40  Aligned_cols=100  Identities=19%  Similarity=0.220  Sum_probs=87.8

Q ss_pred             ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEEE
Q psy6196          33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIM  112 (146)
Q Consensus        33 ~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~  112 (146)
                      +++||+++++||++|.++.+|++ ++|+|||++++|+++|+++| +|+++++++|++|++++.++++++|+||+|.|+||
T Consensus        69 ~v~f~~~~~~Lri~G~vv~~~~~-~~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~~~~~~~~~~vv~d~~~A~i~  146 (347)
T 2qi2_A           69 KIEFQDFDNRLRILGTVIEGPED-TKGKHQSITVTVDSEISITK-EWDDQHIDLLKEATDEKYVTVYTAVAMDEDEAQIF  146 (347)
T ss_dssp             CTTCSCEEEEEEECC----------CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTCHHHHCCEEEEEECSSEEEEE
T ss_pred             EEEccCCCCEEecceEEEEcCCC-CCccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhccccCCCEEEEEEeCCcEEEE
Confidence            89999999999999999999998 88999999999999999999 89999999999999988889999999999999999


Q ss_pred             EEecceeEEEEEEEeeCCCccC
Q psy6196         113 LITASMSLVRTKIETNIPRKRR  134 (146)
Q Consensus       113 lv~~~~~~~~~~i~~~ipkK~~  134 (146)
                      ++++++++++++++.++|||++
T Consensus       147 ~l~~~~~~~~~~i~~~~~Kk~~  168 (347)
T 2qi2_A          147 LIHPYGIQQVGTVYSGRSGKYA  168 (347)
T ss_dssp             EECSSCEEEEEEEECCHHHHC-
T ss_pred             EEECCEEEEEEEEeecCCCccc
Confidence            9999999999999999999875

>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}

Probab=99.50  E-value=7.4e-16  Score=133.13  Aligned_cols=93  Identities=17%  Similarity=0.247  Sum_probs=47.0

Q ss_pred             CCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcC-CCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEEec
Q psy6196          38 PAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKP-EWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITA  116 (146)
Q Consensus        38 ~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~-~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~~  116 (146)
                      |..+.++++|.|+.++   +.|+|||++|+|+++|++.|. +|+++++++|++|++++.  .+++|+||+|.|.++.+..
T Consensus        94 p~~g~v~~~G~~~~e~---~~~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~~~~--~~gvVvvD~~ga~i~~l~g  168 (441)
T 3e20_C           94 PDNGLVIYCGEVIMEG---NKTRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLESDQ--RFGFIVMDGHQTLYGVVSG  168 (441)
T ss_dssp             TTSCCEEEEEEECCGG---GCCEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC-------------------------
T ss_pred             CCCCEEEEeceeeccC---CceeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhCccC--cEEEEEEecCCeEEEEEec
Confidence            8899999999999765   458999999999999999886 799999999999998854  7999999998999999999


Q ss_pred             ceeEEEEEEEeeCCCccCC
Q psy6196         117 SMSLVRTKIETNIPRKRRG  135 (146)
Q Consensus       117 ~~~~~~~~i~~~ipkK~~~  135 (146)
                      +++.++++++.++|||++.
T Consensus       169 ~~~evl~~i~~~vPkK~~~  187 (441)
T 3e20_C          169 SAREVLQRFTVDLPKKHGR  187 (441)
T ss_dssp             -------------------
T ss_pred             CeEEEEEEEEecCCCcccC
Confidence            9999999999999999543

>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A

Probab=99.42  E-value=1.1e-13  Score=118.95  Aligned_cols=97  Identities=15%  Similarity=0.167  Sum_probs=82.9

Q ss_pred             CCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeE--EEEcCCCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEE
Q psy6196          37 TPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKF--ELSKPEWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLI  114 (146)
Q Consensus        37 ~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~--tI~K~~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv  114 (146)
                      .+..+.+.+.|.++.++.+   ++|||++++|+.+|  +++| +|++++++.|.++++.  .+.+++|+||+|.|+||++
T Consensus        88 ~~~~Glvvf~g~~~~~~g~---~~~~tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~~--~~~~~vvvvd~~~A~i~~~  161 (437)
T 1dt9_A           88 VPPNGLVVYCGTIVTEEGK---EKKVNIDFEPFKPINTSLYL-CDNKFHTEALTALLSD--DSKFGFIVIDGSGALFGTL  161 (437)
T ss_dssp             CCTTCEEEEEEEEECGGGC---EEEEEEEECCSCCTTCCEEE-EESSCCCHHHHHHCCC--CCEEEEEECCSSCCCEEEE
T ss_pred             CCCCeEEEEeCccccCCCc---eEEEEEEecCCCCCceeEEE-ecChhhHHHHHHHhcC--CCCEEEEEEeCCceEEEEE
Confidence            4666777777776665432   68999999999999  8988 8999999999999987  6789999999999999999


Q ss_pred             ecceeEEEEEEEeeCCCccCCCCCc
Q psy6196         115 TASMSLVRTKIETNIPRKRRGYFCA  139 (146)
Q Consensus       115 ~~~~~~~~~~i~~~ipkK~~~~~~~  139 (146)
                      +++++.++++++.++|||++..+.+
T Consensus       162 ~~~~~~~~~~i~~~~P~K~~~Gg~s  186 (437)
T 1dt9_A          162 QGNTREVLHKFTVDLPKKHGRGGQS  186 (437)
T ss_dssp             ETTEEEEEECCCCCCSCCCCSSCSC
T ss_pred             cCcEEEEEEEEEecCCCCCcCCCcc
Confidence            9999999999999999997543433

>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}

Probab=99.27  E-value=3.1e-12  Score=107.65  Aligned_cols=81  Identities=11%  Similarity=0.083  Sum_probs=65.8

Q ss_pred             CCCceEEEEecCCCeEEEEcC-CCChHHHHHHHHHhcccCCccEEEEEEecCeEEEEEEecceeEEEEEEEeeCCCccCC
Q psy6196          57 KMGAYHTLDLELNRKFELSKP-EWDSIALERIEVACNIEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG  135 (146)
Q Consensus        57 ~~G~yHTl~i~~~~~~tI~K~-~Wd~~~le~L~eA~~~~~~~~v~~v~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~  135 (146)
                      +.|+|||++++|+.+|++.|. +|+.++++.|.++++.  .+.+++|+||+|.|.||+++.+++.++.+++.++|+|++.
T Consensus       102 ~~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~--~~~~~vvvvd~~~A~i~~~~~~~~~~~~~i~~~vp~K~~~  179 (373)
T 3agk_A          102 STGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVED--NNAIGIIIVERDQATIGLLKGARLEVLKELEGFVPGKHKM  179 (373)
T ss_dssp             ---CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSC--SCEEEEEEEETTEEEEEEEETTEEEEEEEEECCCC-----
T ss_pred             CCccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcC--CCCEEEEEEeCCcEEEEEEeCcEEEEEEEEEecCCCCCcC
Confidence            569999999999999999885 6889999999999987  4789999999999999999999999999999999999753


Q ss_pred             CCCc
Q psy6196         136 YFCA  139 (146)
Q Consensus       136 ~~~~  139 (146)
                      .+.+
T Consensus       180 gG~s  183 (373)
T 3agk_A          180 GGQS  183 (373)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            3333

>3mca_B Protein DOM34, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.17  E-value=4.1e-07  Score=77.31  Aligned_cols=36  Identities=50%  Similarity=0.834  Sum_probs=32.9

Q ss_pred             CCceEEEEeecCceEEEEcCCcChhHHHhcccccCC
Q psy6196           1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSPF   36 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~vef   36 (146)
                      +|+|||++|++++||+|+|.+||+++.++|+..++=
T Consensus        96 ~G~~HTl~ie~~~~i~i~K~~wd~~~le~L~ea~~~  131 (390)
T 3mca_B           96 MGSYHTLDLELHRNFTLYKNEWDAFALDRVDAACNP  131 (390)
T ss_dssp             CCSCCCCCCCSSSCCBCC-CCCCHHHHHHHTTSSSC
T ss_pred             ccceEEEEEecCCcEEEEEcCCCHHHHHHHHHHhcc
Confidence            699999999999999999999999999999987664

>3obw_A Protein pelota homolog; SM fold, hydrolase; 2.60A {Sulfolobus solfataricus}

Probab=97.97  E-value=6.2e-06  Score=69.52  Aligned_cols=35  Identities=23%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196           1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP   35 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve   35 (146)
                      +|+|||+++++++||+++|..||+++.++|+...+
T Consensus       109 ~G~~HT~~ie~~~~i~i~K~~w~~~~le~L~e~~~  143 (364)
T 3obw_A          109 KGAHHTINLDIGDEIIIIKQQWNKYVLDRLKRQAN  143 (364)
T ss_dssp             TTCEEEEEECTTCEEEEECSCC-------------
T ss_pred             cceEEEEEEcCCCeEEEEEccCCHHHHHHHHHHhC
Confidence            69999999999999999998899999999998555

>3j15_A Protein pelota; ribosome recycling, ribosome, archaea, translation-transport complex; HET: ADP; 6.60A {Pyrococcus furiosus}

Probab=97.94  E-value=5.5e-06  Score=69.52  Aligned_cols=35  Identities=26%  Similarity=0.553  Sum_probs=32.6

Q ss_pred             CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196           1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP   35 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve   35 (146)
                      +|+|||+++++++||+++|..||+++.++|+..++
T Consensus        95 ~G~~hT~~ie~~~~i~i~k~~w~~~~~e~L~ea~~  129 (357)
T 3j15_A           95 LGKYHTIAIEQGTVVTIQKPRWKEHHIERLKEAVA  129 (357)
T ss_dssp             CSSBCCEEECSSCCEEECTTCCCHHHHHHHHHSCS
T ss_pred             cccEEEEEecCCCeEEEEEecCCHHHHHHHHHHHh
Confidence            69999999999999999998899999999997555

>2vgn_A DOM34; translation termination factor, protein biosynthesis, translation regulation, cell division, mRNA degradation; 2.5A {Saccharomyces cerevisiae} SCOP: b.38.4.1 c.55.4.2 d.79.3.2 PDB: 2vgm_A 3izq_0 3j16_A*

Probab=97.85  E-value=7.6e-06  Score=69.31  Aligned_cols=35  Identities=14%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196           1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP   35 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve   35 (146)
                      ||+|||+++++++||+++|..||+++.+.|+..++
T Consensus       101 ~g~~hT~~iep~~~i~i~k~~w~~f~~e~L~~a~~  135 (386)
T 2vgn_A          101 VGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACN  135 (386)
T ss_dssp             TTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTC
T ss_pred             CccEEEEEEeCCCeEEEEEccCChhhHHHHHHHhc
Confidence            69999999999999999998899999999998664

>3oby_A Protein pelota homolog; SM fold, hydrolase; 2.90A {Archaeoglobus fulgidus}

Probab=97.80  E-value=1.3e-05  Score=67.26  Aligned_cols=33  Identities=21%  Similarity=0.521  Sum_probs=30.1

Q ss_pred             CceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196           2 GAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP   35 (146)
Q Consensus         2 g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve   35 (146)
                      |+|||+++++++||+++| +||+++.++|+..++
T Consensus        92 G~~hT~~iep~~~i~i~k-~w~~~~~e~L~ea~~  124 (352)
T 3oby_A           92 SGYHTLNITVGKELSIIK-KWKPEQLERLRRAVE  124 (352)
T ss_dssp             -CEEEEEECTTCCEEEEE-ECCHHHHHHHHHHHT
T ss_pred             CeEEEEEEeCCCeEEEEE-cCCHHHHHHHHHHhh
Confidence            899999999999999999 999999999997555

>3agj_B Protein pelota homolog; GTP binding, translation-hydrolase complex; HET: GTP; 2.30A {Aeropyrum pernix}

Probab=97.77  E-value=2.2e-05  Score=65.81  Aligned_cols=33  Identities=12%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             CCceEEEEeecCceEEEEcCC-cChhHHHhcccc
Q psy6196           1 MGAYHTLDLELNRKFELSKPE-WDSLYTARIGLK   33 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~-wd~~~~~~L~~~   33 (146)
                      ||+|||+++++++||+|+|.+ |++++.+.|...
T Consensus        92 ~g~~ht~~ie~~~~i~i~k~~~w~~~~le~L~~~  125 (358)
T 3agj_B           92 KGRRHSTAVSIGTWLVVERDKGWSEQELERLAAG  125 (358)
T ss_dssp             TTSEEEEEEETTCCEEEECTTCCCHHHHHHHHHC
T ss_pred             cccEEEEEEeCCCcEEEEEecCCCHhhHHHHHhh
Confidence            699999999999999999965 999999999976

>2qi2_A Pelota, cell division protein pelota related protein; DOM34, cell cycle; 2.90A {Thermoplasma acidophilum} SCOP: b.38.4.1 c.55.4.2 d.79.3.2

Probab=97.63  E-value=3.1e-05  Score=64.82  Aligned_cols=34  Identities=15%  Similarity=0.383  Sum_probs=31.4

Q ss_pred             CCceEEEEeecCceEEEEcCCcChhHHHhcccccC
Q psy6196           1 MGAYHTLDLELNRKFELSKPEWDSLYTARIGLKSP   35 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~~wd~~~~~~L~~~ve   35 (146)
                      +|+|||++++++++|+++| +||+++.+.|+..++
T Consensus        93 ~g~~htl~ie~~~~i~i~k-~w~~f~~e~L~~a~~  126 (347)
T 2qi2_A           93 KGKHQSITVTVDSEISITK-EWDDQHIDLLKEATD  126 (347)
T ss_dssp             CCSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTC
T ss_pred             CccEEEEEEcCCCeEEEEE-cCCHhHHHHHHHHhc
Confidence            6999999999999999999 999999999997544

>3e20_C Eukaryotic peptide chain release factor subunit 1; SUP35, SUP45, translation termination, peptide release, GTP- nucleotide-binding; 3.50A {Schizosaccharomyces pombe}

Probab=95.72  E-value=0.0012  Score=56.78  Aligned_cols=34  Identities=12%  Similarity=-0.023  Sum_probs=30.5

Q ss_pred             CceEEEEeecCceEEEEcC-CcChhHHHhcccccC
Q psy6196           2 GAYHTLDLELNRKFELSKP-EWDSLYTARIGLKSP   35 (146)
Q Consensus         2 g~~ht~~~~~~~~ftl~K~-~wd~~~~~~L~~~ve   35 (146)
                      |.|||+++++++||++.|. +|++++.+.|...++
T Consensus       112 ~~~~T~~iep~~pi~i~k~~~w~~~~le~L~eal~  146 (441)
T 3e20_C          112 TRKLNIDFEPFKPINTSQYLCDNKFHTEALAELLE  146 (441)
T ss_dssp             CEEEEEEECCSCCTTCCEEEEESSCCCTTGGGGC-
T ss_pred             eeEEEEEecCCCceEEEEEccCCHHHHHHHHHHhC
Confidence            6899999999999999996 999999999997554

>3agk_A Peptide chain release factor subunit 1; translation; 2.10A {Aeropyrum pernix}

Probab=93.76  E-value=0.014  Score=48.62  Aligned_cols=44  Identities=9%  Similarity=-0.004  Sum_probs=34.2

Q ss_pred             CCceEEEEeecCceEEEEcC-CcChhHHHhcccccCCCCCceEEE
Q psy6196           1 MGAYHTLDLELNRKFELSKP-EWDSLYTARIGLKSPFTPAVGYYY   44 (146)
Q Consensus         1 ~g~~ht~~~~~~~~ftl~K~-~wd~~~~~~L~~~vef~~~~~~LR   44 (146)
                      .|+|||+++++++||++.|. +|++++.+.|...++-++....+-
T Consensus       103 ~~~~~t~~~~~~~p~~~~~~~~~~~f~l~~L~~~~~~~~~~~vvv  147 (373)
T 3agk_A          103 TGKFECFMFSPPEPIRVFYYRTDKRFITDFLEDMVEDNNAIGIII  147 (373)
T ss_dssp             --CCEEEEEBCSSCCCSCEEEEESSCCCHHHHTTSSCSCEEEEEE
T ss_pred             CccEEEEEecCCCCceEEEEecCChhHHHHHHHHhcCCCCEEEEE
Confidence            37899999999999999995 899999999998666654333333

>1dt9_A ERF1, protein (eukaryotic peptide chain release factor subunit 1); tRNA mimicry, protein sythesis, STOP codon recognition, peptidyl-tRNA hydrolysis; 2.70A {Homo sapiens} SCOP: c.55.4.2 d.79.3.2 d.91.1.1 PDB: 3e1y_A* 2ktu_A 2ktv_A 2lgt_A 2hst_A

Probab=92.19  E-value=0.028  Score=47.87  Aligned_cols=32  Identities=13%  Similarity=-0.003  Sum_probs=28.5

Q ss_pred             ceEEEEeecCceE--EEEcCCcChhHHHhcccccC
Q psy6196           3 AYHTLDLELNRKF--ELSKPEWDSLYTARIGLKSP   35 (146)
Q Consensus         3 ~~ht~~~~~~~~f--tl~K~~wd~~~~~~L~~~ve   35 (146)
                      +|||+++++++||  ++.| +|++++.+.|...++
T Consensus       108 ~~~tl~~e~~~pi~~~~~~-~~~~f~l~~L~~~~~  141 (437)
T 1dt9_A          108 KKVNIDFEPFKPINTSLYL-CDNKFHTEALTALLS  141 (437)
T ss_dssp             EEEEEEECCSCCTTCCEEE-EESSCCCHHHHHHCC
T ss_pred             EEEEEEecCCCCCceeEEE-ecChhhHHHHHHHhc
Confidence            6999999999999  7888 999999999987444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d2vgna1	135	b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae	5e-17
d2vgna1	135	b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae	1e-07
d2vgna2	142	c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisi	9e-17
d2qi2a1	126	b.38.4.1 (A:1-126) Cell division protein pelota {T	5e-14
d2qi2a1	126	b.38.4.1 (A:1-126) Cell division protein pelota {T	1e-05
d2qi2a2	117	c.55.4.2 (A:127-243) Cell division protein pelota	5e-05

>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 70.2 bits (172), Expect = 5e-17
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 36  FTPAVGYYYYCGRNIQE-----NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVA 90
           F     Y  Y G  + +     N  + +G Y +  L+    F + K  ++    + +  A
Sbjct: 74  FDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEA 133

Query: 91  CN 92
           CN
Sbjct: 134 CN 135

>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 135

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 5/30 (16%), Positives = 12/30 (40%)

Query: 1   MGAYHTLDLELNRKFELSKPEWDSLYTARI 30
           +G Y +  L+    F + K  ++      +
Sbjct: 101 VGKYLSFTLDYVYPFTIIKQNFNKFMQKLL 130

>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

 Score = 69.8 bits (171), Expect = 9e-17
 Identities = 19/43 (44%), Positives = 35/43 (81%)

Query: 93  IEKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRG 135
           IE  +D AAV++QEG+A++ L+T+S ++++ KIE ++P+K+R 
Sbjct: 1   IEYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRT 43

>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 62.1 bits (151), Expect = 5e-14
 Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 36  FTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN 92
           F          G  I+  +  K G + ++ + ++ +  ++K EWD   ++ ++ A +
Sbjct: 72  FQDFDNRLRILGTVIEGPEDTK-GKHQSITVTVDSEISITK-EWDDQHIDLLKEATD 126

>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 126

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 5/30 (16%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 1   MGAYHTLDLELNRKFELSKPEWDSLYTARI 30
            G + ++ + ++ +  ++K EWD  +   +
Sbjct: 93  KGKHQSITVTVDSEISITK-EWDDQHIDLL 121

>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]} Length = 117

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.2 bits (89), Expect = 5e-05
 Identities = 9/43 (20%), Positives = 12/43 (27%)

Query: 94  EKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGY 136
           +      AV M E  A I LI          + +    K    
Sbjct: 2   KYVTVYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYAEG 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d2vgna1	135	Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}	99.86
d2qi2a1	126	Cell division protein pelota {Thermoplasma acidoph	99.83
d2vgna2	142	Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}	99.38
d2qi2a2	117	Cell division protein pelota {Thermoplasma acidoph	98.44
d1dt9a1	134	Middle domain of eukaryotic peptide chain release	94.68

>d2vgna1 b.38.4.1 (A:1-135) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.86  E-value=5.1e-23  Score=151.36  Aligned_cols=60  Identities=22%  Similarity=0.434  Sum_probs=58.0

Q ss_pred             ccCCCCCceEEEEEeEEeee-----CcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhc
Q psy6196          33 KSPFTPAVGYYYYCGRNIQE-----NQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN   92 (146)
Q Consensus        33 ~vef~~~~~~LRI~G~i~~~-----~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~   92 (146)
                      +++||+++++|||+|+|+++     |++|++|+|||++|++|++|+|+|+.||++++++|+||||
T Consensus        71 ~~ef~~~~~~LRi~G~iv~e~~~~~n~~v~~Gs~HTl~v~~~~~itI~K~~Wd~~~~~~L~eA~d  135 (135)
T d2vgna1          71 SEDFDMKDEYLKYKGVTVTDESGASNVDIPVGKYLSFTLDYVYPFTIIKQNFNKFMQKLLNEACN  135 (135)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTSSSSTTCCTTCEEEEECCSSSCEEEEESCCCHHHHHHHHHTTC
T ss_pred             EEEeecCCCEEEEeeeEEecccccccccccccCcEEEEEcCCCeEEEEECCCCHHHHHHHHHhhC
Confidence            88999999999999999987     7899999999999999999999999999999999999996

>d2qi2a1 b.38.4.1 (A:1-126) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: Sm-like fold
superfamily: Dom34/Pelota N-terminal domain-like
family: Dom34/Pelota N-terminal domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.83  E-value=1.5e-21  Score=141.97  Aligned_cols=58  Identities=19%  Similarity=0.355  Sum_probs=47.3

Q ss_pred             ccCCCCCceEEEEEeEEeeeCcccCCCceEEEEecCCCeEEEEcCCCChHHHHHHHHHhc
Q psy6196          33 KSPFTPAVGYYYYCGRNIQENQYVKMGAYHTLDLELNRKFELSKPEWDSIALERIEVACN   92 (146)
Q Consensus        33 ~vef~~~~~~LRI~G~i~~~~e~v~~G~yHTl~i~~~~~~tI~K~~Wd~~~le~L~eA~~   92 (146)
                      +++||+++++|||+|+|+++|++++ |+|||++|++|++|+|+| +|+++++++|+||||
T Consensus        69 ~ief~~~~~~LRi~G~i~~~~e~~~-G~~HTl~v~~~~~~~i~K-~W~~~~~~~LkeA~d  126 (126)
T d2qi2a1          69 KIEFQDFDNRLRILGTVIEGPEDTK-GKHQSITVTVDSEISITK-EWDDQHIDLLKEATD  126 (126)
T ss_dssp             CTTCSCEEEEEEECC---------C-CSEEEEEECTTCEEEEES-CCCHHHHHHHHHHTC
T ss_pred             EEEecCCCCEEEEeeEEeeCCccCC-cCcEEEEEcCCCeEEEEe-cCCHHHHHHHHHhhC
Confidence            9999999999999999999999875 999999999999999999 599999999999986

>d2vgna2 c.55.4.2 (A:136-277) Dom34 {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Dom34
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=99.38  E-value=2.3e-13  Score=99.71  Aligned_cols=48  Identities=38%  Similarity=0.614  Sum_probs=35.9

Q ss_pred             cCCccEEEEEEecCeEEEEEEecceeEEEEEEEeeCCCccCCCCCcce
Q psy6196          94 EKTADVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYFCATL  141 (146)
Q Consensus        94 ~~~~~v~~v~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~~~~~~~  141 (146)
                      +.+|++|||+|+||+|+||||++++|.++++|+.+||||+++.+.++|
T Consensus         2 ~~~a~vaavvm~eG~A~i~li~~~~t~~~~~Ie~~iP~K~~~~~~s~~   49 (142)
T d2vgna2           2 EYKSDTAAVVLQEGIAHVCLVTSSSTILKQKIEYSMPKKKRTTDVLKF   49 (142)
T ss_dssp             TTTTCEEEEEEETTEEEEEEECSSCEEEEEEEEC---------CCSSC
T ss_pred             CccceEEEEEEeCCcEEEEEEcCCEEEEEEEEEEeCCCCcCCCCccHH
Confidence            568999999999999999999999999999999999999876566664

>d2qi2a2 c.55.4.2 (A:127-243) Cell division protein pelota {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Cell division protein pelota
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.44  E-value=7e-08  Score=67.79  Aligned_cols=40  Identities=23%  Similarity=0.031  Sum_probs=34.6

Q ss_pred             cEEEEEEecCeEEEEEEecceeEEEEEEEeeCCCccCCCC
Q psy6196          98 DVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRRGYF  137 (146)
Q Consensus        98 ~v~~v~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~~~~  137 (146)
                      -.++|+||+|+|+||+|++++++++++++.++|||++..+
T Consensus         6 ~y~~vvid~~eA~i~ll~~~gi~~~~~i~~~~pgK~~~~~   45 (117)
T d2qi2a2           6 VYTAVAMDEDEAQIFLIHPYGIQQVGTVYSGRSGKYAEGN   45 (117)
T ss_dssp             CEEEEEECSSEEEEEEECSSCEEEEEEEECCHHHHC----
T ss_pred             EEEEEEEECCCEEEEEEccCeEEEEEEEEecCCCCccccc
Confidence            4789999999999999999999999999999999986544

>d1dt9a1 c.55.4.2 (A:143-276) Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Translational machinery components
family: ERF1/Dom34 middle domain-like
domain: Middle domain of eukaryotic peptide chain release factor subunit 1, ERF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.68  E-value=0.0098  Score=41.86  Aligned_cols=45  Identities=16%  Similarity=0.191  Sum_probs=38.4

Q ss_pred             cEEEEEEecCeEEEEEEecceeEEEEEEEeeCCCccC-CCCCccee
Q psy6196          98 DVAAVMMQEGLANIMLITASMSLVRTKIETNIPRKRR-GYFCATLY  142 (146)
Q Consensus        98 ~v~~v~~~eG~A~i~lv~~~~~~~~~~i~~~ipkK~~-~~~~~~~~  142 (146)
                      ..++|+||.+.|.++++......+..+++..+|+|.+ +.-|++||
T Consensus         3 ~yGliviD~~~a~ig~l~G~~~~v~~~~~~~VpgKh~~GGQS~~RF   48 (134)
T d1dt9a1           3 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRF   48 (134)
T ss_dssp             EEEEEECCSSCCCEEEEETTEEEEEECCCCCCSCCCCSSCSCSHHH
T ss_pred             cEEEEEEECCCcEEEEEeCCeEEEEEEEeeccccccccccchhHHH
Confidence            3689999999999999999999999999999999965 43445554