Psyllid ID: psy621

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
Protein Sequence
MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQY
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHcccccccEEEEcccccccEEEEEEEccccccccccEEEEEEEccccccccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccEEEcccccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHccccEEEEcccEEEEccEEHHccccHHHHccccEEEEEEEcEEccccccccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHccccccEEEcccccccEEEEEEEEEccccccccccEEEEEEEcccccccccEEEEEccccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccEEEEEcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHcccccccccEEEEcHHHHHHHHHHHHHccccccccccccEcccccccEEEEEEEEEEEccccccEccEEEEEEEccccccccccEEEEccccccccEccccccc
Coil and Loop (DISEMBL)
MAQVPTSSALRALSMEYKslqeepvegfrvklvnddnlfewevaifgppdtlyqggyFKAIIegelphwdvnVQNQIENLTKTfeassfisaplyteSWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDlwlfkpnpfsldikfnddgtKIIASRFMIQAVNITDGNMEKEMVKELRRIAHEsslnvsvfhpyfvffdqfelvrpttiqsmlggSVTMMFIRFRVKlvnddnlfewevaifgppdtlyqggyfkahmkfpidypyspptirfltkvwhpnvyegtaqy
Flexible Loop (DISEMBL)
maqvptssalRALSMEYKslqeepveGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQY
Low Complexity Region (SEG)
MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQY
Disordered region (IsUnstruct)
************************VEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE*****
Disordered Region (DISOPRED)
***************EYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVR********TIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNI******************ESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEG****
Disordered Region (DISEMBL)
MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQY
Disordered Region (DISPRO)
*******SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	289	2.2.26 [Sep-21-2011]
Q29503	238	Ubiquitin-conjugating enz	no	N/A	0.211	0.256	0.770	1e-25
Q6ZWZ2	238	Ubiquitin-conjugating enz	yes	N/A	0.211	0.256	0.770	1e-25
Q712K3	238	Ubiquitin-conjugating enz	yes	N/A	0.211	0.256	0.770	1e-25
P49427	236	Ubiquitin-conjugating enz	no	N/A	0.211	0.258	0.737	3e-23
Q8CFI2	235	Ubiquitin-conjugating enz	no	N/A	0.211	0.259	0.737	3e-23
P25868	168	Ubiquitin-conjugating enz	N/A	N/A	0.207	0.357	0.616	6e-18
P62255	170	Ubiquitin-conjugating enz	no	N/A	0.204	0.347	0.593	6e-18
P62254	170	Ubiquitin-conjugating enz	no	N/A	0.204	0.347	0.593	6e-18
P62253	170	Ubiquitin-conjugating enz	no	N/A	0.204	0.347	0.593	6e-18
Q4R5Y8	170	Ubiquitin-conjugating enz	N/A	N/A	0.204	0.347	0.593	6e-18

>sp|Q29503|UB2R2_RABIT Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct: 28  FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query: 284 E 284
           E
Sbjct: 88  E 88

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes monoubiquitination and 'Lys-48'-linked polyubiquitination. May be involved in degradation of katenin.
Oryctolagus cuniculus (taxid: 9986)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|Q6ZWZ2|UB2R2_MOUSE Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct: 28  FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query: 284 E 284
           E
Sbjct: 88  E 88

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes monoubiquitination and 'Lys-48'-linked polyubiquitination. May be involved in degradation of katenin.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q712K3|UB2R2_HUMAN Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct: 28  FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query: 284 E 284
           E
Sbjct: 88  E 88

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes monoubiquitination and 'Lys-48'-linked polyubiquitination. May be involved in degradation of katenin.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P49427|UB2R1_HUMAN Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 54/61 (88%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA +KFPIDYPYSPP  RFLTK+WHPN+Y
Sbjct: 28  FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 87

Query: 284 E 284
           E
Sbjct: 88  E 88

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Cooperates with the E2 UBCH5C and the SCF(FBXW11) E3 ligase complex for the polyubiquitination of NFKBIA leading to its subsequent proteasomal degradation. Performs ubiquitin chain elongation building ubiquitin chains from the UBE2D3-primed NFKBIA-linked ubiquitin. UBE2D3 acts as an initiator E2, priming the phosphorylated NFKBIA target at positions 'Lys-21' and/or 'Lys-22' with a monoubiquitin. Cooperates with the SCF(SKP2) E3 ligase complex to regulate cell proliferation through ubiquitination and degradation of MYBL2 and KIP1. Involved in ubiquitin conjugation and degradation of CREM isoform ICERIIgamma and ATF15 resulting in abrogation of ICERIIgamma- and ATF5-mediated repression of cAMP-induced transcription during both meiotic and mitotic cell cycles. Involved in the regulation of the cell cycle G2/M phase through its targeting of the WEE1 kinase for ubiquitination and degradation. Also involved in the degradation of beta-catenin. Is target of human herpes virus 1 protein ICP0, leading to ICP0-dependent dynamic interaction with proteasomes.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q8CFI2|UB2R1_MOUSE Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1

 Score =  109 bits (272), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 54/61 (88%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA +KFPIDYPYSPP  RFLTK+WHPN+Y
Sbjct: 28  FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 87

Query: 284 E 284
           E
Sbjct: 88  E 88

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Cooperates with the E2 UBCH5C and the SCF(FBXW11) E3 ligase complex for the polyubiquitination of NFKBIA leading to its subsequent proteasomal degradation. Performs ubiquitin chain elongation building ubiquitin chains from the UBE2D3-primed NFKBIA-linked ubiquitin. UBE2D3 acts as an initiator E2, priming the phosphorylated NFKBIA target at positions 'Lys-21' and/or 'Lys-22' with a monoubiquitin. Cooperates with the SCF(SKP2) E3 ligase complex to regulate cell proliferation through ubiquitination and degradation of MYBL2 and KIP1. Involved in ubiquitin conjugation and degradation of CREM isoform ICERIIgamma and ATF15 resulting in abrogation of ICERIIgamma- and ATF5-mediated repression of cAMP-induced transcription during both meiotic and mitotic cell cycles. Involved in the regulation of the cell cycle G2/M phase through its targeting of the WEE1 kinase for ubiquitination and degradation. Also involved in the degradation of beta-catenin.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P25868|UBC7_WHEAT Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 48/60 (80%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           F++  V+D N+FEW+V I GPP+TLY GGYF A M FP +YP SPPT+RF +++WHPNVY
Sbjct: 27  FQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVY 86

Catalyzes the covalent attachment of ubiquitin to other proteins so as to signal them for selective protein degradation. Involved in the formation of multiubiquitin chains.

Triticum aestivum (taxid: 4565)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62255|UB2G1_RAT Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           F   L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP  PP ++F+T++WHPNV
Sbjct: 25  FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 83

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. May be involved in degradation of muscle-specific proteins. Mediates polyubiquitination of CYP3A4.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62254|UB2G1_MOUSE Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           F   L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP  PP ++F+T++WHPNV
Sbjct: 25  FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 83

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. May be involved in degradation of muscle-specific proteins. Mediates polyubiquitination of CYP3A4.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62253|UB2G1_HUMAN Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           F   L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP  PP ++F+T++WHPNV
Sbjct: 25  FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 83

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. May be involved in degradation of muscle-specific proteins. Mediates polyubiquitination of CYP3A4.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q4R5Y8|UB2G1_MACFA Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 47/59 (79%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           F   L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP  PP ++F+T++WHPNV
Sbjct: 25  FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 83

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-, as well as 'Lys-63'-linked polyubiquitination. May be involved in degradation of muscle-specific proteins. Mediates polyubiquitination of CYP3A4.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
328720305	1024	PREDICTED: patched domain-containing pro	0.574	0.162	0.807	3e-74
242022973	1087	conserved hypothetical protein [Pediculu	0.546	0.145	0.715	3e-61
312373383	766	hypothetical protein AND_17500 [Anophele	0.678	0.255	0.564	6e-57
157117285	1160	hypothetical protein AaeL_AAEL001299 [Ae	0.574	0.143	0.632	1e-55
158289940	981	AGAP010394-PA [Anopheles gambiae str. PE	0.574	0.169	0.608	1e-55
170070021	874	conserved hypothetical protein [Culex qu	0.574	0.189	0.614	9e-55
332022011	1069	Patched domain-containing protein 3 [Acr	0.574	0.155	0.596	9e-53
189240857	1093	PREDICTED: similar to Ptc-related CG1121	0.685	0.181	0.531	1e-52
195023480	1276	GH20944 [Drosophila grimshawi] gi|193901	0.678	0.153	0.529	4e-52
195580910	1061	GD10331 [Drosophila simulans] gi|1941922	0.667	0.181	0.525	1e-51

>gi|328720305|ref|XP_001943131.2| PREDICTED: patched domain-containing protein 3-like [Acyrthosiphon pisum]

 Score =  284 bits (727), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/166 (80%), Positives = 152/166 (91%)

Query: 59  KAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTI 118
           + II GEL +WDV+VQN+IENLTK FE S+FIS+PLYTESW+RSFV+YV RNQ+ LNVTI
Sbjct: 558 QVIIAGELDYWDVDVQNEIENLTKAFENSTFISSPLYTESWVRSFVNYVNRNQEELNVTI 617

Query: 119 DTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELR 178
           DTRE FL+TLNDLWLFKPNPFSLD+KFNDDGTKI+ASRFMIQAVNI+DGNMEK+MV+ELR
Sbjct: 618 DTRETFLQTLNDLWLFKPNPFSLDVKFNDDGTKIVASRFMIQAVNISDGNMEKDMVRELR 677

Query: 179 RIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRF 224
           +IAHES LNVSVFHPYFVFFDQFELVRPT+IQSM+ G  TMM I F
Sbjct: 678 KIAHESPLNVSVFHPYFVFFDQFELVRPTSIQSMVVGGATMMLISF 723

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022973|ref|XP_002431911.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212517255|gb|EEB19173.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  241 bits (615), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 135/158 (85%)

Query: 59  KAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTI 118
           + I+ GEL + D N Q++IE LT+TFE SSF+S  LYTESW+RSF SY+RRN D+LNVTI
Sbjct: 503 QVIVSGELNYSDPNTQDEIEKLTQTFENSSFVSNSLYTESWVRSFTSYIRRNGDYLNVTI 562

Query: 119 DTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELR 178
           DT E F++ L  LWLFKPNPFSLD+KFN+D TKI+ASRFMIQA+NITDGN EKEMV+ELR
Sbjct: 563 DTEEDFIENLKSLWLFKPNPFSLDVKFNEDETKILASRFMIQAINITDGNHEKEMVQELR 622

Query: 179 RIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGS 216
           RIAH S LNV+VFHPYFV+FDQFELVRPT+IQ M+ G+
Sbjct: 623 RIAHSSPLNVTVFHPYFVYFDQFELVRPTSIQCMVVGA 660

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373383|gb|EFR21138.1| hypothetical protein AND_17500 [Anopheles darlingi]

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 114/202 (56%), Positives = 148/202 (73%), Gaps = 6/202 (2%)

Query: 26  EGF-RVKLVNDDNLFEWEVAIFGPPDTLYQGGYFK--AIIEGELPHWDVNVQNQIENLTK 82
           EG  R KL   D+   + V  F   D  Y+   ++   I+ G+L + D N Q QIE L +
Sbjct: 113 EGLERRKLSKADS---YSVKFFDLEDEYYREFPYRIQVIVTGDLNYSDPNTQMQIEELMQ 169

Query: 83  TFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLD 142
           + E +S++++PLY+ESWLRSF+SYV RN D+LN+T+D+ + F+  L ++WLF  NPFSLD
Sbjct: 170 SLENTSYVTSPLYSESWLRSFISYVDRNNDYLNLTLDSEQAFIDALREIWLFPANPFSLD 229

Query: 143 IKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFE 202
           +KFND GTKI+ASRFMIQAVNITD N EK MVK+LR+I  ES LN +VFHPYFVFFDQFE
Sbjct: 230 VKFNDAGTKILASRFMIQAVNITDTNHEKVMVKDLRQICKESPLNATVFHPYFVFFDQFE 289

Query: 203 LVRPTTIQSMLGGSVTMMFIRF 224
           LVRPT+IQSM+ G++ MM I F
Sbjct: 290 LVRPTSIQSMIVGALIMMLISF 311

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117285|ref|XP_001653012.1| hypothetical protein AaeL_AAEL001299 [Aedes aegypti] gi|108883354|gb|EAT47579.1| AAEL001299-PA [Aedes aegypti]

 Score =  222 bits (566), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/166 (63%), Positives = 131/166 (78%)

Query: 59  KAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTI 118
           + II G L + D   Q QIE+L ++ E +S+IS+PLY+ESWLRSFV+YV RN D+LN+T+
Sbjct: 561 QVIITGHLNYSDPETQMQIEDLMQSLENTSYISSPLYSESWLRSFVAYVDRNNDYLNLTL 620

Query: 119 DTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELR 178
           D+ E F+K L D+WLF  NPFSLD+KF+DDG +I ASRFM+QAVNITD N EK MVK+LR
Sbjct: 621 DSEEAFIKALKDIWLFPANPFSLDVKFSDDGKRIEASRFMVQAVNITDTNHEKIMVKDLR 680

Query: 179 RIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRF 224
            I   S LN +VFHPYFVFFDQFELVRPT+IQSM+ G++ MM I F
Sbjct: 681 DICKASPLNATVFHPYFVFFDQFELVRPTSIQSMVVGALIMMLISF 726

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158289940|ref|XP_311553.4| AGAP010394-PA [Anopheles gambiae str. PEST] gi|157018400|gb|EAA07199.5| AGAP010394-PA [Anopheles gambiae str. PEST]

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 135/166 (81%)

Query: 59  KAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTI 118
           + I+ G+L + D + Q QIE+L ++ E +S++++PLY+ESWLRSF+SYV RN D+LN+T+
Sbjct: 558 QVIVTGDLNYSDPHTQMQIEDLMQSLENTSYVTSPLYSESWLRSFISYVDRNNDYLNLTL 617

Query: 119 DTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELR 178
           D+ + F+  L ++WLF  NPFSLD+KFN+ GTKI+ASRFMIQAVNITD N EK MVK+LR
Sbjct: 618 DSEQAFIDALREIWLFPANPFSLDVKFNEAGTKILASRFMIQAVNITDTNHEKVMVKDLR 677

Query: 179 RIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRF 224
           +I  +S LN +VFHPYFVFFDQFELVRPT+IQSM+ G++ MM I F
Sbjct: 678 QICKDSPLNATVFHPYFVFFDQFELVRPTSIQSMIVGALIMMLISF 723

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170070021|ref|XP_001869437.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167865886|gb|EDS29269.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  219 bits (559), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 102/166 (61%), Positives = 130/166 (78%)

Query: 59  KAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTI 118
           + I+ GEL + D N Q QIE+L ++ E +S+I+ PLY+ESWLRSF+SYV RN D+LN+T+
Sbjct: 264 QVIVTGELNYSDPNTQAQIEDLMQSLENTSYITTPLYSESWLRSFISYVDRNNDYLNLTL 323

Query: 119 DTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELR 178
           D+ E F+  L ++WLF  NPFSLD+KF+ DG +I ASRFMIQA+NITD N EK MVK+LR
Sbjct: 324 DSEESFIAALKEIWLFPANPFSLDVKFSADGKRIEASRFMIQAINITDTNHEKVMVKDLR 383

Query: 179 RIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRF 224
            IA  S LN +VFHPYFVFFDQFELVRPT IQSM+ G++ MM + F
Sbjct: 384 AIAKASPLNATVFHPYFVFFDQFELVRPTAIQSMVVGALIMMLVSF 429

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022011|gb|EGI62337.1| Patched domain-containing protein 3 [Acromyrmex echinatior]

 Score =  213 bits (542), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 99/166 (59%), Positives = 127/166 (76%)

Query: 59  KAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTI 118
           + +I GE  + D  +Q Q+ENLT + EAS +ISAP+YTESWLRSF++YV RNQD+LNV+I
Sbjct: 554 QVVISGEYDYSDPVIQQQVENLTSSLEASKYISAPVYTESWLRSFINYVTRNQDYLNVSI 613

Query: 119 DTREGFLKTLNDLWLFKPNPFSLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELR 178
                F+K L +LWL+  + FSLD+KF+D   KI+ASRF+IQAVN++  N EK+MVKELR
Sbjct: 614 TDEHNFIKNLKELWLYPNSAFSLDVKFDDTNEKIVASRFLIQAVNVSGTNQEKDMVKELR 673

Query: 179 RIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRF 224
            +   S LN SVFHPYFVFFDQFELVRPT+IQ M+ G++ MM I F
Sbjct: 674 GLCAASPLNASVFHPYFVFFDQFELVRPTSIQCMIFGALVMMLISF 719

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240857|ref|XP_969210.2| PREDICTED: similar to Ptc-related CG11212-PA [Tribolium castaneum] gi|270013723|gb|EFA10171.1| hypothetical protein TcasGA2_TC012361 [Tribolium castaneum]

 Score =  213 bits (541), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 7/205 (3%)

Query: 22  EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFK--AIIEGELPHWDVNVQNQIEN 79
           EE +E  R K+  +D+   + +  F   D  Y+   ++   ++ GE  + D  +Q Q+EN
Sbjct: 564 EEGLE--RRKVAKNDS---YAIEFFDREDDYYREFPYRIQVVVAGEYDYSDPEIQRQVEN 618

Query: 80  LTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPF 139
           LT+TFE +S++S  LYTESWLRSFV Y  RN+DFLNV+I T+EGFL  L + WL   +PF
Sbjct: 619 LTQTFENTSYVSNTLYTESWLRSFVQYAERNEDFLNVSIKTKEGFLTALKEFWLAPTSPF 678

Query: 140 SLDIKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFD 199
           SLD+KFND G  II  RF+IQAVNI+    EKEMV+ LR+I  ES LNVSVFHPYFVFFD
Sbjct: 679 SLDVKFNDAGDSIIGMRFLIQAVNISGTEHEKEMVRALRKICKESPLNVSVFHPYFVFFD 738

Query: 200 QFELVRPTTIQSMLGGSVTMMFIRF 224
           QFELVRP +IQ+M+ G+  MM + F
Sbjct: 739 QFELVRPLSIQNMIVGAGIMMLVSF 763

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195023480|ref|XP_001985702.1| GH20944 [Drosophila grimshawi] gi|193901702|gb|EDW00569.1| GH20944 [Drosophila grimshawi]

 Score =  211 bits (536), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 107/202 (52%), Positives = 143/202 (70%), Gaps = 6/202 (2%)

Query: 26  EGF-RVKLVNDDNLFEWEVAIFGPPDTLYQGGYFK--AIIEGELPHWDVNVQNQIENLTK 82
           EG  R KL  +D+   + V  F   D  Y+   ++   II G   + D  VQ Q+ENLT 
Sbjct: 600 EGLERRKLSREDS---YSVEFFDREDDYYREFPYRMQVIIAGVYNYSDPLVQEQMENLTS 656

Query: 83  TFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLD 142
           T E +S++++ LYTESWLRSF+S++ RN D+LN TID  + F+  + + WLF  NPFSLD
Sbjct: 657 TLEHTSYVTSSLYTESWLRSFLSFMERNNDYLNETIDDEQSFIDAVKEHWLFPGNPFSLD 716

Query: 143 IKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFE 202
           ++ NDD T+IIASRF+IQAVNITD N EKEMV++LR+I  +S LN S+FHPYFVFFDQFE
Sbjct: 717 VRLNDDDTQIIASRFLIQAVNITDTNHEKEMVRDLRKICKDSPLNASIFHPYFVFFDQFE 776

Query: 203 LVRPTTIQSMLGGSVTMMFIRF 224
           LVRP ++Q+M+ G++ MM I F
Sbjct: 777 LVRPVSLQAMVIGAIIMMIISF 798

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195580910|ref|XP_002080277.1| GD10331 [Drosophila simulans] gi|194192286|gb|EDX05862.1| GD10331 [Drosophila simulans]

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/198 (52%), Positives = 142/198 (71%), Gaps = 5/198 (2%)

Query: 29  RVKLVNDDNLFEWEVAIFGPPDTLYQGGYFK--AIIEGELPHWDVNVQNQIENLTKTFEA 86
           R KL  +D+   + V  F   D  Y+   ++   II G L + D  VQ Q+ENLT T E 
Sbjct: 420 RRKLSREDS---YSVEFFDREDDYYREFPYRMQVIIAGPLNYSDPLVQEQVENLTSTLEH 476

Query: 87  SSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLDIKFN 146
           +S++++  YTESWLRSF+S++ RN + LNVT+D  + F+  + + WLF  NPFSLD++FN
Sbjct: 477 TSYVTSRRYTESWLRSFLSFLERNNELLNVTVDDEQTFIDAVKEHWLFPGNPFSLDVRFN 536

Query: 147 DDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRP 206
           +D T+IIASRF+IQAVNITD N EKEMV++LR+I  +S LN S+FHPYFVFFDQFELVRP
Sbjct: 537 EDETQIIASRFLIQAVNITDTNHEKEMVRDLRQICKDSPLNASIFHPYFVFFDQFELVRP 596

Query: 207 TTIQSMLGGSVTMMFIRF 224
            ++Q+M+ G++ MM I F
Sbjct: 597 VSLQAMVIGAIIMMIISF 614

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	289
FB|FBgn0262867	1169	Ptr "Patched-related" [Drosoph	0.678	0.167	0.524	6.8e-50
FB|FBgn0036516	341	CG7656 [Drosophila melanogaste	0.211	0.178	0.950	1.8e-30
UNIPROTKB|F1NV52	237	UBE2R2 "Uncharacterized protei	0.211	0.257	0.770	6.6e-26
UNIPROTKB|J9P7F2	238	UBE2R2 "Uncharacterized protei	0.211	0.256	0.770	6.6e-26
UNIPROTKB|Q712K3	238	UBE2R2 "Ubiquitin-conjugating	0.211	0.256	0.770	6.6e-26
UNIPROTKB|Q29503	238	UBE2R2 "Ubiquitin-conjugating	0.211	0.256	0.770	6.6e-26
MGI|MGI:1914865	238	Ube2r2 "ubiquitin-conjugating	0.211	0.256	0.770	6.6e-26
UNIPROTKB|E1BAB9	225	UBE2R2 "Uncharacterized protei	0.211	0.271	0.770	6.6e-26
ZFIN|ZDB-GENE-040718-344	250	ube2r2 "ubiquitin-conjugating	0.211	0.244	0.770	8.4e-26
UNIPROTKB|F1N4D3	237	CDC34 "Uncharacterized protein	0.211	0.257	0.737	4.2e-24

FB|FBgn0262867 Ptr "Patched-related" [Drosophila melanogaster (taxid:7227)]

 Score = 530 (191.6 bits), Expect = 6.8e-50, P = 6.8e-50
 Identities = 106/202 (52%), Positives = 144/202 (71%)

Query:    26 EGF-RVKLVNDDNLFEWEVAIFGPPDTLYQGGYFK--AIIEGELPHWDVNVQNQIENLTK 82
             EG  R KL  +D+   + V  F   D  Y+   ++   II G L + D  VQ Q+ENLT 
Sbjct:   524 EGLERRKLSREDS---YSVEFFDREDDYYREFPYRMQVIIAGPLNYSDPLVQEQVENLTS 580

Query:    83 TFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFKPNPFSLD 142
             T E +S++++  YTESWLRSF+S++ RN + LNVT+D  + F+  + + WLF  NPFSLD
Sbjct:   581 TLEHTSYVTSRRYTESWLRSFLSFLERNNELLNVTVDDEQTFIDAVKEHWLFPGNPFSLD 640

Query:   143 IKFNDDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFE 202
             ++FN+D T+IIASRF+IQAVNITD N EKEMV++LR+I  +S LN S+FHPYFVFFDQFE
Sbjct:   641 VRFNEDETQIIASRFLIQAVNITDTNHEKEMVRDLRQICKDSPLNASIFHPYFVFFDQFE 700

Query:   203 LVRPTTIQSMLGGSVTMMFIRF 224
             LVRP ++Q+M+ G++ MM I F
Sbjct:   701 LVRPVSLQAMVIGAIIMMIISF 722

GO:0005886 "plasma membrane" evidence=ISS

GO:0004872 "receptor activity" evidence=NAS

GO:0010004 "gastrulation involving germ band extension" evidence=IMP

GO:0016324 "apical plasma membrane" evidence=IDA

GO:0016328 "lateral plasma membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008158 "hedgehog receptor activity" evidence=IEA

FB|FBgn0036516 CG7656 [Drosophila melanogaster (taxid:7227)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 58/61 (95%), Positives = 60/61 (98%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FRVKL+NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFP DYPYSPP+IRFLTKVWHPNVY
Sbjct:    82 FRVKLINDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPHDYPYSPPSIRFLTKVWHPNVY 141

Query:   284 E 284
             E
Sbjct:   142 E 142

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|F1NV52 UBE2R2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct:    28 FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query:   284 E 284
             E
Sbjct:    88 E 88

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

UNIPROTKB|J9P7F2 UBE2R2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct:    28 FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query:   284 E 284
             E
Sbjct:    88 E 88

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q712K3 UBE2R2 "Ubiquitin-conjugating enzyme E2 R2" [Homo sapiens (taxid:9606)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct:    28 FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query:   284 E 284
             E
Sbjct:    88 E 88

GO:0005524 "ATP binding" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IDA

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

UNIPROTKB|Q29503 UBE2R2 "Ubiquitin-conjugating enzyme E2 R2" [Oryctolagus cuniculus (taxid:9986)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct:    28 FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query:   284 E 284
             E
Sbjct:    88 E 88

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=ISS

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

MGI|MGI:1914865 Ube2r2 "ubiquitin-conjugating enzyme E2R 2" [Mus musculus (taxid:10090)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct:    28 FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query:   284 E 284
             E
Sbjct:    88 E 88

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006513 "protein monoubiquitination" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

UNIPROTKB|E1BAB9 UBE2R2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 47/61 (77%), Positives = 57/61 (93%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FR+ LV++ +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct:    15 FRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 74

Query:   284 E 284
             E
Sbjct:    75 E 75

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

ZFIN|ZDB-GENE-040718-344 ube2r2 "ubiquitin-conjugating enzyme E2R 2" [Danio rerio (taxid:7955)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 47/61 (77%), Positives = 56/61 (91%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FR+ LV + +L+ WEVAIFGPP+TLY+GGYFKAH+KFPIDYPYSPPT RFLTK+WHPN+Y
Sbjct:    28 FRITLVEESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIY 87

Query:   284 E 284
             E
Sbjct:    88 E 88

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

UNIPROTKB|F1N4D3 CDC34 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
 Identities = 45/61 (73%), Positives = 54/61 (88%)

Query:   224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             FRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA +KFPIDYPYSPP  RFLTK+WHPN+Y
Sbjct:    31 FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 90

Query:   284 E 284
             E
Sbjct:    91 E 91

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA

GO:0043951 "negative regulation of cAMP-mediated signaling" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	289
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	1e-28
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	2e-28
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	2e-27
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	7e-26
pfam02460	801	pfam02460, Patched, Patched family	3e-17
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	3e-15
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	2e-14
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	3e-14
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	8e-14
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	5e-12
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	2e-10

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  106 bits (267), Expect = 1e-28
 Identities = 33/61 (54%), Positives = 41/61 (67%), Gaps = 1/61 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
                V DDNLFEWEV I GP  T Y+GG FK  ++FP DYP+ PP ++F TK++HPNV 
Sbjct: 17  ISAFPV-DDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKPPKVKFTTKIYHPNVD 75

Query: 284 E 284
            
Sbjct: 76  P 76

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  106 bits (266), Expect = 2e-28
 Identities = 34/61 (55%), Positives = 42/61 (68%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
                V+DDNLF WE  I GPPDT Y+GG FK  ++FP DYP+ PP +RF TK++HPNV 
Sbjct: 25  ISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVD 84

Query: 284 E 284
            
Sbjct: 85  P 85

Length = 153

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  103 bits (259), Expect = 2e-27
 Identities = 32/64 (50%), Positives = 43/64 (67%), Gaps = 1/64 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
              + V ++NL EW   I GPPDT Y+GG FK  ++FP DYP+ PP +RF+TK++HPNV 
Sbjct: 19  ISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD 77

Query: 284 EGTA 287
           E   
Sbjct: 78  ENGK 81

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 99.3 bits (248), Expect = 7e-26
 Identities = 31/61 (50%), Positives = 42/61 (68%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           F    V+D+NL EW   I GPP T Y+GG FK  ++FP DYP+ PP ++F+TK++HPNV 
Sbjct: 17  FTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFKPPKVKFITKIYHPNVD 76

Query: 284 E 284
            
Sbjct: 77  S 77

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|217050 pfam02460, Patched, Patched family

 Score = 81.6 bits (202), Expect = 3e-17
 Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 10/157 (6%)

Query: 75  NQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLF 134
           +++  +   FE++ +   P  T  WLR + ++ + N   L    D  + +       +L 
Sbjct: 512 DRLNEMVDEFESTPYSMGPNSTSFWLREYENFYKTNGSELE---DEEKSWSYDELKWFLK 568

Query: 135 KP--NPFSLDIKFN----DDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHE-SSLN 187
            P  +P+  D+ ++    D+ T++   RF     +++       +++E R +A E    N
Sbjct: 569 WPGNSPWQGDLVWDNKSDDNTTEVTKFRFTTAGKDLSTWTDRTRLLQEWRGVADEYPEFN 628

Query: 188 VSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRF 224
           V+VF     F DQ   + P TIQS++   + M  + F
Sbjct: 629 VTVFDEDSPFLDQILTILPDTIQSIIWTLICMAIVCF 665

The transmembrane protein Patched is a receptor for the morphogene Sonic Hedgehog. This protein associates with the smoothened protein to transduce hedgehog signals. Length = 801

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 71.1 bits (175), Expect = 3e-15
 Identities = 30/59 (50%), Positives = 37/59 (62%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
           + SAL+ L  E K LQ++P  G     V+DDNLF WE  I GPPDT Y+GG FK  +E
Sbjct: 2  SSPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLE 60

Length = 153

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 68.6 bits (167), Expect = 2e-14
 Identities = 25/51 (49%), Positives = 35/51 (68%)

Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           +NLF W  +I GP D+ Y GG F   + FP DYP+ PP ++F TK++HPN+
Sbjct: 28  ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNI 78

Length = 147

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score = 68.0 bits (167), Expect = 3e-14
 Identities = 27/51 (52%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          L  E K L ++P  G     V DDNLFEWEV I GP  T Y+GG FK  IE
Sbjct: 2  LQKELKELLKDPPPGISAFPV-DDNLFEWEVTIIGPEGTPYEGGVFKLDIE 51

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score = 66.8 bits (164), Expect = 8e-14
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 1/53 (1%)

Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          + L  E K L+++P  G   + V ++NL EW   I GPPDT Y+GG FK  IE
Sbjct: 2  KRLQKELKDLKKDPPSGISAEPV-EENLLEWHGTIRGPPDTPYEGGIFKLDIE 53

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 61.9 bits (151), Expect = 5e-12
 Identities = 25/51 (49%), Positives = 31/51 (60%)

Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          L  E K L+++P  GF    V+D+NL EW   I GPP T Y+GG FK  IE
Sbjct: 2  LLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIE 52

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 57.9 bits (140), Expect = 2e-10
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           +  N   +++ + GP  T Y+GGY+K  +  P  YP  PP +RFLTK++HPN+
Sbjct: 27  DPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNI 79

Length = 152

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	289
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	99.94
KOG0417|consensus	148		99.94
KOG0417|consensus	148		99.93
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	99.92
KOG0419|consensus	152		99.91
KOG0426|consensus	165		99.91
KOG0419|consensus	152		99.9
KOG1934|consensus	868		99.9
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	99.89
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	99.89
PLN00172	147	ubiquitin conjugating enzyme; Provisional	99.89
PLN00172	147	ubiquitin conjugating enzyme; Provisional	99.88
KOG0425|consensus	171		99.88
KOG0421|consensus	175		99.85
KOG0425|consensus	171		99.85
KOG0418|consensus	200		99.85
KOG0426|consensus	165		99.84
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.84
KOG0421|consensus	175		99.82
PF02460	798	Patched: Patched family; InterPro: IPR003392 The t	99.81
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.81
KOG0418|consensus	200		99.8
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	99.8
KOG0424|consensus	158		99.79
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.78
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	99.77
KOG0427|consensus	161		99.76
KOG0424|consensus	158		99.76
KOG0894|consensus	244		99.75
TIGR00917	1204	2A060601 Niemann-Pick C type protein family. The m	99.75
KOG0422|consensus	153		99.72
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.71
KOG0416|consensus	189		99.7
KOG0422|consensus	153		99.68
KOG0894|consensus	244		99.68
KOG0423|consensus	223		99.65
KOG0416|consensus	189		99.61
KOG0428|consensus	314		99.55
KOG0420|consensus	184		99.55
KOG0420|consensus	184		99.53
KOG0423|consensus	223		99.52
KOG0427|consensus	161		99.51
TIGR00918	1145	2A060602 The Eukaryotic (Putative) Sterol Transpor	99.48
KOG0428|consensus	314		99.4
KOG0896|consensus	138		98.97
KOG0429|consensus	258		98.93
KOG0895|consensus	1101		98.85
KOG1933|consensus	1201		98.81
KOG0895|consensus	1101		98.65
KOG0896|consensus	138		98.24
KOG0429|consensus	258		97.52
KOG1935|consensus	1143		94.19
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	93.37
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	92.67
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	92.65
smart00591	107	RWD domain in RING finger and WD repeat containing	89.64

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.6e-27  Score=186.58  Aligned_cols=126  Identities=31%  Similarity=0.546  Sum_probs=108.1

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      +..|.+||+||+++|++++++|+++.+.+++|+++|++.|.||+||+|+||.|++.+  +++||++||+++|.++++|||
T Consensus         3 s~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPN   82 (153)
T COG5078           3 SPSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPN   82 (153)
T ss_pred             chhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCC
Confidence            445999999999999999999999998777799999999999999999999987665  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      +..+|.+|++++.+.|.|.|         +++|.. + ++++|.++     .++++|.+.++++
T Consensus        83 V~~~G~vCLdIL~~~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~  146 (153)
T COG5078          83 VDPSGNVCLDILKDRWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREW  146 (153)
T ss_pred             cCCCCCChhHHHhCCCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHH
Confidence            99999999999999999986         344432 2 34555443     5777788777774

>KOG0417|consensus

Probab=99.94  E-value=9.3e-27  Score=180.28  Aligned_cols=123  Identities=24%  Similarity=0.412  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceec
Q psy621            9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEA   86 (289)
Q Consensus         9 ~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~   86 (289)
                      +.+||.||+++|++++++||.+.+ +++|+++|+++|.||.++|||||.|.+.|  +.+||++||+|+|.++++|||+.+
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~-~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~   80 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGP-VGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDS   80 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCC-CCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCc
Confidence            456999999999999999999995 78899999999999999999999997765  899999999999999999999999


Q ss_pred             cceeeCccccCccchHH---------HHHhhh-c-ccccc-----cCCCchhhHHHHhHHhh
Q psy621           87 SSFISAPLYTESWLRSF---------VSYVRR-N-QDFLN-----VTIDTREGFLKTLNDLW  132 (289)
Q Consensus        87 ~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n-----~~~~~~~~F~~~l~~~~  132 (289)
                      .|.+|++++.+.|.++.         ++.|.. + ++++.     +...|+..|.+.+++|-
T Consensus        81 ~G~IclDILk~~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt  142 (148)
T KOG0417|consen   81 NGRICLDILKDQWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWT  142 (148)
T ss_pred             cccchHHhhhccCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999999999998885         334432 1 23332     33368888999888843

>KOG0417|consensus

Probab=99.93  E-value=3.4e-26  Score=177.19  Aligned_cols=80  Identities=41%  Similarity=0.879  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCC
Q psy621          170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLY  249 (289)
Q Consensus       170 ~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y  249 (289)
                      .+|+.+|++++..+...++.+-                                     ++++|+++|+++|.||.+|||
T Consensus         3 ~~RI~kE~~~l~~dp~~~~~~~-------------------------------------~~~dnl~~w~a~I~GP~~SpY   45 (148)
T KOG0417|consen    3 SKRIIKELQDLLRDPPPGCSAG-------------------------------------PVGDNLFHWQATILGPPGSPY   45 (148)
T ss_pred             HHHHHHHHHHHhcCCCCCCccC-------------------------------------CCCCceeeEEEEEECCCCCCc
Confidence            3589999999999876666553                                     578999999999999999999


Q ss_pred             CCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          250 QGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |||+|++.|.||++||++||+|+|.|+||||||++.|
T Consensus        46 EgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~G   82 (148)
T KOG0417|consen   46 EGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSNG   82 (148)
T ss_pred             CCCEEEEEEECCCCCCCCCCceEeecccccCCcCccc
Confidence            9999999999999999999999999999999999765

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.1e-24  Score=173.08  Aligned_cols=82  Identities=48%  Similarity=0.937  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      ..+|+++|+.++.+..+..+++.                                    |.+++|+++|+++|.||++||
T Consensus         6 a~~RL~kE~~~l~~~~~~~~~a~------------------------------------p~~d~~l~~w~~~i~GP~dtp   49 (153)
T COG5078           6 ALKRLLKELKKLQKDPPPGISAG------------------------------------PVDDDNLFHWEATITGPPDTP   49 (153)
T ss_pred             HHHHHHHHHHHHhcCCCCceEEE------------------------------------ECCCCcceeEEEEEECCCCCC
Confidence            67899999999999976777765                                    234449999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |+||+|++.|.||++||++||+|+|.|+||||||+.+|
T Consensus        50 Yegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV~~~G   87 (153)
T COG5078          50 YEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNVDPSG   87 (153)
T ss_pred             cCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCcCCCC
Confidence            99999999999999999999999999999999999555

>KOG0419|consensus

Probab=99.91  E-value=9.9e-25  Score=163.77  Aligned_cols=98  Identities=29%  Similarity=0.532  Sum_probs=92.8

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      |+..|.|||+|++++|+++++.|+++.| .++|+..|.++|+||++|||+||.|++.+  +++||.+||.|+|..+.+||
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P-~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHP   79 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAP-VENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHP   79 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCC-CccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCC
Confidence            5679999999999999999999999997 66799999999999999999999998876  69999999999999999999


Q ss_pred             ceeccceeeCccccCccchHH
Q psy621           83 TFEASSFISAPLYTESWLRSF  103 (289)
Q Consensus        83 ~~e~~~~~~~~~~~~~Wl~~y  103 (289)
                      |+..+|.+|++++...|.+.|
T Consensus        80 Nvya~G~iClDiLqNrWsp~Y  100 (152)
T KOG0419|consen   80 NVYADGSICLDILQNRWSPTY  100 (152)
T ss_pred             CcCCCCcchHHHHhcCCCCch
Confidence            999999999999999998887

>KOG0426|consensus

Probab=99.91  E-value=6.6e-24  Score=159.20  Aligned_cols=126  Identities=29%  Similarity=0.461  Sum_probs=106.8

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEE--EEEEcCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF--KAIIEGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~v~v~~~yp~~~P~v~~~~~~~~~   82 (289)
                      |+..|+|||++||++|.+++++||.+.|.++||++.|.|.|.||++|+|+||.|  ++.++.+||++||+.+|...++||
T Consensus         1 m~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHP   80 (165)
T KOG0426|consen    1 MAGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHP   80 (165)
T ss_pred             CchhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccC
Confidence            456899999999999999999999999999999999999999999999999998  667799999999999999999999


Q ss_pred             ceeccceeeCccc-------------cCccchH---------HHHHhhhcc--cccccCC-----CchhhHHHHhHH
Q psy621           83 TFEASSFISAPLY-------------TESWLRS---------FVSYVRRNQ--DFLNVTI-----DTREGFLKTLND  130 (289)
Q Consensus        83 ~~e~~~~~~~~~~-------------~~~Wl~~---------y~~~l~~~~--~~~n~~~-----~~~~~F~~~l~~  130 (289)
                      |+..+|.+|.+++             .+.|.+-         ..++|...+  ..+|++.     +++++|.+.++.
T Consensus        81 Niy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~~~  157 (165)
T KOG0426|consen   81 NIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIAKR  157 (165)
T ss_pred             cccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHHHH
Confidence            9999999999987             4678654         345555432  2345443     678888777665

>KOG0419|consensus

Probab=99.90  E-value=1.9e-23  Score=156.88  Aligned_cols=84  Identities=35%  Similarity=0.839  Sum_probs=78.2

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ...++++|++++++.++.+.+++.-                                     |.++|+..|.++|.||.+
T Consensus         3 tpArrrLmrDfkrlqedpp~gisa~-------------------------------------P~~~niM~W~a~I~Gp~~   45 (152)
T KOG0419|consen    3 TPARRRLMRDFKRLQEDPPAGISAA-------------------------------------PVENNIMEWNAVIFGPQD   45 (152)
T ss_pred             chHHHHHHHHHHHhhcCCCCCccCC-------------------------------------CCccceeeeeeeEEcCCC
Confidence            3467899999999999988888775                                     789999999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |||+||+|+|.|+|+++||.+||.|+|.++.||||||.+|.
T Consensus        46 tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPNvya~G~   86 (152)
T KOG0419|consen   46 TPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPNVYADGS   86 (152)
T ss_pred             CCcCCceEEEEEEcccccCCCCCeeEeeeeccCCCcCCCCc
Confidence            99999999999999999999999999999999999999964

>KOG1934|consensus

Probab=99.90  E-value=5.1e-24  Score=210.76  Aligned_cols=170  Identities=28%  Similarity=0.451  Sum_probs=152.7

Q ss_pred             cEEEEEEcCCCCCCCcccceeccccccceeccceeeCccccCccchHHHHHhhhcccccccCCCchhhHHHHhHHhhccC
Q psy621           56 GYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTIDTREGFLKTLNDLWLFK  135 (289)
Q Consensus        56 ~~~~v~v~~~yp~~~P~v~~~~~~~~~~~e~~~~~~~~~~~~~Wl~~y~~~l~~~~~~~n~~~~~~~~F~~~l~~~~~~~  135 (289)
                      ....+.|.++.+++.|..+.+...+...||+.+++.|+.++.+||++|++|....+   ....++.++|...+.+.|+..
T Consensus       524 ~~v~v~V~np~dl~~~~~~~~~~~~~~~fE~~~~~~G~~sT~~wlr~y~~~~~~~~---~~~~~~~~~~~~~~~~~fl~~  600 (868)
T KOG1934|consen  524 QQVAVFVNNPPDLSNPENRDNLNELVSEFESTPYSMGRESTKFWLREYLNFLFEKN---AELEDNDDEFYDHLYESFLKS  600 (868)
T ss_pred             ceEEEEEcCCccCCCHHHHHHHHHHHHHHhcCCcccCcccchhHHHHHHHHHhhhc---ccccCCCcchhhhhHHHHhcc
Confidence            35789999999999999999999999999999999999999999999999965331   112244677888888778776


Q ss_pred             CC--CCccceEEc---CCCCeEEEEEEEEEEEecCCchHHHHHHHHHHHHHHhC-CCCeEeeccccccccchhhhcchhh
Q psy621          136 PN--PFSLDIKFN---DDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHES-SLNVSVFHPYFVFFDQFELVRPTTI  209 (289)
Q Consensus       136 ~~--~~~~di~~~---~~~~~i~asrf~~~~~~~~~~~~~~~~~~~~r~ia~~~-~~~~~~~~~~~~~~DQ~~~i~~~ti  209 (289)
                      +.  +|..||+++   +++..+.++||.+..+++.+|+++.+++++||++|+++ ++|+++|+|++.|+|||++++|+|+
T Consensus       601 ~~~~~~~~di~~~~~~~~~~~i~~f~f~~~~~~~~~~~~~~~~~~~~R~ia~~~~~fnvtvf~~~~~f~Dq~~~v~~~ti  680 (868)
T KOG1934|consen  601 PEFSFWRNDIVFDNKSDEETIIFAFRFTIGLTNLTKWNERTRLLETWRKIADEYSDFNVTVFDPSFVFLDQYLSVVPVTI  680 (868)
T ss_pred             cccccCccceEeccCCCCCceEEEEEEEEEEeccCCHHHHHHHHHHHHHHHhhccCCCeEEecCchHHHHHHHHhccHHH
Confidence            63  899999999   56667899999999999999999999999999999885 7999999999999999999999999


Q ss_pred             hhhhhhceeeeEEeeeccc
Q psy621          210 QSMLGGSVTMMFIRFRVKL  228 (289)
Q Consensus       210 q~~~~a~~~m~~v~~~~i~  228 (289)
                      |++++|++||++||++|||
T Consensus       681 ~~~~~a~i~M~~v~~lfIp  699 (868)
T KOG1934|consen  681 QSIVIALICMFLVCFLFIP  699 (868)
T ss_pred             HHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=99.89  E-value=7.8e-23  Score=164.65  Aligned_cols=123  Identities=18%  Similarity=0.330  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      ++.|||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++|||+.
T Consensus         2 ~~~kRl~~E~~~l~~~~~~~i~~~~-~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~   80 (152)
T PTZ00390          2 SISKRIEKETQNLANDPPPGIKAEP-DPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNID   80 (152)
T ss_pred             cHHHHHHHHHHHHHhCCCCCeEEEE-CCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceEC
Confidence            3679999999999999999999996 66799999999999999999999986655  89999999999999999999999


Q ss_pred             ccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621           86 ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        86 ~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      .+|.+|++++.+.|.+++         +++|...  ++++|.+     .++.+.|.+.++++
T Consensus        81 ~~G~iCl~iL~~~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~  142 (152)
T PTZ00390         81 KLGRICLDILKDKWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREW  142 (152)
T ss_pred             CCCeEECccCcccCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999989998885         3444321  3333333     35788888888874

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=99.89  E-value=6e-23  Score=165.31  Aligned_cols=81  Identities=32%  Similarity=0.669  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      ..+|+.+|++++.++.+.++.+.                                     +.++|+++|+++|.||++||
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~-------------------------------------~~~~d~~~w~~~i~GP~~tp   45 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAE-------------------------------------PDPGNYRHFKILMEGPDGTP   45 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEE-------------------------------------ECCCCccEEEEEEEcCCCCC
Confidence            35799999999998877777765                                     56789999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |+||.|+++|.||++||++||+|+|.|+||||||+++|
T Consensus        46 Y~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~G   83 (152)
T PTZ00390         46 YEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG   83 (152)
T ss_pred             CcCcEEEEEEECccccCCCCCEEEEecCCeeceECCCC
Confidence            99999999999999999999999999999999999865

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=99.89  E-value=1e-22  Score=163.28  Aligned_cols=122  Identities=24%  Similarity=0.399  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceec
Q psy621            9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEA   86 (289)
Q Consensus         9 ~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~   86 (289)
                      |.+||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||+.||+++|.++++|||+..
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~-~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~   80 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGP-SDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINS   80 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEE-CCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECC
Confidence            369999999999999999999996 67799999999999999999999886655  899999999999999999999999


Q ss_pred             cceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621           87 SSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        87 ~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      +|.+|++++.+.|.+++         +.+|...  ++++|.+     .++.+.|.+.++++
T Consensus        81 ~G~iCl~il~~~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~  141 (147)
T PLN00172         81 NGSICLDILRDQWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREW  141 (147)
T ss_pred             CCEEEcccCcCCCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHH
Confidence            99999999989998885         3344321  2333332     25677788777773

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=99.88  E-value=1.9e-22  Score=161.76  Aligned_cols=80  Identities=39%  Similarity=0.806  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCC
Q psy621          170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLY  249 (289)
Q Consensus       170 ~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y  249 (289)
                      .+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|||
T Consensus         3 ~~Rl~kE~~~l~~~~~~~~~~~-------------------------------------~~~~nl~~w~~~i~GP~~tpy   45 (147)
T PLN00172          3 TKRIQKEHKDLLKDPPSNCSAG-------------------------------------PSDENLFRWTASIIGPSDSPY   45 (147)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEE-------------------------------------ECCCChheEEEEEECCCCCCC
Confidence            4799999999998866666554                                     567899999999999999999


Q ss_pred             CCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          250 QGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      +||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        46 egg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~G   82 (147)
T PLN00172         46 AGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSNG   82 (147)
T ss_pred             CCCEEEEEEECCcccCCCCCEEEEecCcccceECCCC
Confidence            9999999999999999999999999999999999765

>KOG0425|consensus

Probab=99.88  E-value=3.2e-22  Score=154.96  Aligned_cols=125  Identities=36%  Similarity=0.594  Sum_probs=104.9

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      ++.+..-|+++|++|+++|.+|+.++++++.|++.|.+.|.||++|.|+||.|+..  +|++||++||+++|.++++|||
T Consensus         3 ~~~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPN   82 (171)
T KOG0425|consen    3 SSQASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPN   82 (171)
T ss_pred             cchhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCC
Confidence            45588889999999999999999999989999999999999999999999999655  5899999999999999999999


Q ss_pred             eeccceeeCccc-------------cCccchH---------HHHHhhhc--ccccccCC-----CchhhHHHHhHH
Q psy621           84 FEASSFISAPLY-------------TESWLRS---------FVSYVRRN--QDFLNVTI-----DTREGFLKTLND  130 (289)
Q Consensus        84 ~e~~~~~~~~~~-------------~~~Wl~~---------y~~~l~~~--~~~~n~~~-----~~~~~F~~~l~~  130 (289)
                      +..+|.+|.+++             .+.|++.         ..++|+..  +.++|+++     ++.++|.+.+..
T Consensus        83 vy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV~r  158 (171)
T KOG0425|consen   83 VYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKVRR  158 (171)
T ss_pred             cCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHHHH
Confidence            999999999997             3567664         56666643  45667664     455666665544

>KOG0421|consensus

Probab=99.85  E-value=2.5e-21  Score=147.52  Aligned_cols=129  Identities=24%  Similarity=0.346  Sum_probs=107.4

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      ....+..|||++||..|.....+||++.| ++||+++|...|.||.+|+|+|-.|++.+  +++||+.||.|.|.+.++|
T Consensus        25 ~~~~~V~KRLq~ELm~Lmms~~~gISAFP-~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H  103 (175)
T KOG0421|consen   25 VDGHSVTKRLQSELMGLMMSNTPGISAFP-ESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH  103 (175)
T ss_pred             ccCchHHHHHHHHHHHHHhcCCCCcccCc-CcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence            34566789999999999999999999997 66799999999999999999998887665  8999999999999999999


Q ss_pred             cceeccceeeCccccCccchHH---------HHHhhhc--ccccccC----CCchhhHHHHhHHhhc
Q psy621           82 KTFEASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT----IDTREGFLKTLNDLWL  133 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~----~~~~~~F~~~l~~~~~  133 (289)
                      ||++-.|.+|++++.+.|...|         +++|...  ..++|..    .++.++|.+.|..+..
T Consensus       104 PNVD~~GnIcLDILkdKWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~d~~eykk~l~~~Y~  170 (175)
T KOG0421|consen  104 PNVDLSGNICLDILKDKWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWSDQEEYKKYLEALYK  170 (175)
T ss_pred             CCccccccchHHHHHHHHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhcCHHHHHHHHHHHhh
Confidence            9999999999999999997765         4444421  2333332    3678888888877543

>KOG0425|consensus

Probab=99.85  E-value=3e-21  Score=149.59  Aligned_cols=59  Identities=73%  Similarity=1.452  Sum_probs=57.1

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      .++.|++.|.+.|+||++|.|+||.|+..+.||.+||.+||+++|+|++||||||++|.
T Consensus        30 vd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy~~G~   88 (171)
T KOG0425|consen   30 VDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVYEDGD   88 (171)
T ss_pred             ccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcCCCCC
Confidence            67889999999999999999999999999999999999999999999999999999884

>KOG0418|consensus

Probab=99.85  E-value=1.9e-21  Score=155.26  Aligned_cols=83  Identities=36%  Similarity=0.719  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHhC---CCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          169 MEKEMVKELRRIAHES---SLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~---~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      ..+|+.++.++..++.   ..++.+-                                     ...+|+.+.++.|.||+
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~I~ve-------------------------------------~vn~~~~~ikG~I~GP~   46 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAGIIVE-------------------------------------MVNENLKEIKGHIAGPE   46 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcceEEE-------------------------------------EccCChhhceeEecCCC
Confidence            5678899999988875   2344432                                     34579999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCCc
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ  288 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~~  288 (289)
                      |||||||+|.++|++|++||++||+|+|.|+||||||.+.+|.
T Consensus        47 ~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnVSs~tGa   89 (200)
T KOG0418|consen   47 DTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNVSSQTGA   89 (200)
T ss_pred             CCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCCCccccc
Confidence            9999999999999999999999999999999999999998885

>KOG0426|consensus

Probab=99.84  E-value=7.7e-21  Score=142.75  Aligned_cols=85  Identities=39%  Similarity=0.838  Sum_probs=78.5

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ....+|+|+|++++-.+.+.++.+-                                    |.+++|.+.|.|.|.||++
T Consensus         3 ~~AlkRLm~EykqLt~~~P~GIvAg------------------------------------P~~EdnfF~W~cLI~GP~~   46 (165)
T KOG0426|consen    3 GTALKRLMAEYKQLTLNPPEGIVAG------------------------------------PINEDNFFEWECLIQGPED   46 (165)
T ss_pred             hhHHHHHHHHHHHHccCCCCcceeC------------------------------------CCCccceeeeeeeeeCCCC
Confidence            3567899999999999988887765                                    3688999999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |+|+||+|-.++.||.+||.+||+++|...+||||||.+|.
T Consensus        47 T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPNiy~dG~   87 (165)
T KOG0426|consen   47 TCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPNIYPDGR   87 (165)
T ss_pred             CcccCCccceeeecCCCCCCCCCceeeecccccCcccCCCe
Confidence            99999999999999999999999999999999999999874

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.84  E-value=7.4e-21  Score=151.96  Aligned_cols=78  Identities=50%  Similarity=1.012  Sum_probs=66.8

Q ss_pred             HHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCC-CCcceEEEEEeCCCCCCCC
Q psy621          172 EMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVND-DNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       172 ~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~-~~~~~w~~~i~gp~~t~y~  250 (289)
                      |+++|++.+.++.+.++.+.                                     +.+ +|+.+|+++|.||++|||+
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~-------------------------------------~~~~~~~~~w~~~i~gp~~t~y~   43 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQ-------------------------------------PSEDDNLFEWHVTIFGPPGTPYE   43 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEE-------------------------------------EESTTETTEEEEEEEBETTSTTT
T ss_pred             CHHHHHHHHhhCCCCCEEEE-------------------------------------ECCCCChheEEEEEeccCcccee
Confidence            68899999988877787775                                     334 4999999999999999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        44 gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G   79 (140)
T PF00179_consen   44 GGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENG   79 (140)
T ss_dssp             TSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTS
T ss_pred             cccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999999999999999999554

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0421|consensus

Probab=99.82  E-value=7.1e-20  Score=139.60  Aligned_cols=85  Identities=39%  Similarity=0.745  Sum_probs=77.6

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      ...-.+|+..|+-.+.-.-.-++++|                                     |+++|+++|..+|.||.
T Consensus        27 ~~~V~KRLq~ELm~Lmms~~~gISAF-------------------------------------P~~dnlf~WvGtItGp~   69 (175)
T KOG0421|consen   27 GHSVTKRLQSELMGLMMSNTPGISAF-------------------------------------PESDNLFKWVGTITGPK   69 (175)
T ss_pred             CchHHHHHHHHHHHHHhcCCCCcccC-------------------------------------cCcCceeEEeeEeeCCC
Confidence            34455789999998888767788888                                     78899999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +|+|+|-.|++.+.||.+||++||.|+|+|++|||||+..|.
T Consensus        70 dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HPNVD~~Gn  111 (175)
T KOG0421|consen   70 DTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHPNVDLSGN  111 (175)
T ss_pred             CccccCcEEEEEEecCCCCCCCCCeeEeeccccCCCcccccc
Confidence            999999999999999999999999999999999999998875

>PF02460 Patched: Patched family; InterPro: IPR003392 The transmembrane protein, patched, is a receptor for the morphogene Sonic Hedgehog

Probab=99.81  E-value=1.1e-20  Score=190.10  Aligned_cols=187  Identities=26%  Similarity=0.391  Sum_probs=154.3

Q ss_pred             EEEEEeCCCCCCc-cCc-EEEEEEcCCCCCCCcccceeccccccceeccceeeCccccCccchHHHHHhhhcccccccCC
Q psy621           41 WEVAIFGPPDTLY-QGG-YFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQDFLNVTI  118 (289)
Q Consensus        41 w~~~i~gp~~t~y-~g~-~~~v~v~~~yp~~~P~v~~~~~~~~~~~e~~~~~~~~~~~~~Wl~~y~~~l~~~~~~~n~~~  118 (289)
                      +...+....+.+| +.| ...+.+.++.++++|..+.++..++..||+.+++.+...+++|+++|++|++..+. ...+.
T Consensus       474 yl~~~~~~~e~yf~~~g~~v~V~v~~~~d~~~~~~~~~l~~lv~~fe~~~~~~~~~~t~~WL~~y~~~l~~~~~-~~~~~  552 (798)
T PF02460_consen  474 YLQKFFRLQEKYFFSYGPPVYVVVNNPPDYSDPENQDRLNSLVQEFENSPYSIGNNSTSFWLRDYLNFLNSINS-SFQDD  552 (798)
T ss_pred             hhHHHHHHHHHHhhccCceEEEEecCCCCccchHHHHHHHHHHHHHhccccccccccchhhHHHHHHHHhhccc-ccccc
Confidence            3333443444444 323 46778889999999999999999999999999999999999999999999975210 01111


Q ss_pred             CchhhHHHHhHHhhccCCC-CCccceEEc---CCCCeEEEEEEEEEEEecCCchHHHHHHHHHHHHHHhC-CCCeEeecc
Q psy621          119 DTREGFLKTLNDLWLFKPN-PFSLDIKFN---DDGTKIIASRFMIQAVNITDGNMEKEMVKELRRIAHES-SLNVSVFHP  193 (289)
Q Consensus       119 ~~~~~F~~~l~~~~~~~~~-~~~~di~~~---~~~~~i~asrf~~~~~~~~~~~~~~~~~~~~r~ia~~~-~~~~~~~~~  193 (289)
                      ++++.|++.+++|+....+ +|+.|++++   ++++.|.++||.++.+++.+++++.++++++|+++++. ++++.+|++
T Consensus       553 ~~~~~~~~~l~~FL~~~~~~~~~~di~~~~~~~~~~~I~a~rf~~~~~~~~~~~~~~~~~~~~R~i~~~~~~~~~~~~~~  632 (798)
T PF02460_consen  553 NDKEFFYNLLPEFLNSPEYRHYSNDIKFDDSDNDTTQISAFRFTTQLKNLSDWSDRIEAMKDWRQIADKYSDFNVFVFSP  632 (798)
T ss_pred             ccceeeeccchhhhccccccccccccccccccCCccceeeEEEEEEccCCCCHHHHHHHHHHHHHhhhcceecceEeecc
Confidence            1224478888887765443 799999998   55567999999999999999999999999999999974 699999999


Q ss_pred             ccccccchhhhcchhhhhhhhhceeeeEEeeeccc
Q psy621          194 YFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKL  228 (289)
Q Consensus       194 ~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~  228 (289)
                      .+.|+|||..|.++|++++++|++||++||++|++
T Consensus       633 ~~~~~dq~~~i~~~~~~~~~~a~~~~~~v~~l~~~  667 (798)
T PF02460_consen  633 FFIFYDQYLSIVPETIQNIGIALVCMFVVCLLFIP  667 (798)
T ss_pred             chhhHhhhhhcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999998

In Drosophila melanogaster, this protein associates with the smoothened protein to transduce hedgehog signals, leading to the activation of wingless, decapentaplegic and patched itself. It participates in cell interactions that establish pattern within the segment and imaginal disks during development. The mouse homologue may play a role in epidermal development. The human Niemann-Pick C1 protein, defects in which cause Niemann-Pick type II disease, is also a member of this family. This protein is involved in the intracellular trafficking of cholesterol, and may play a role in vesicular trafficking in glia, a process that may be crucial for maintaining the structural functional integrity of nerve terminals.; GO: 0008158 hedgehog receptor activity, 0016020 membrane

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.81  E-value=1.6e-19  Score=144.34  Aligned_cols=79  Identities=46%  Similarity=0.913  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      +|+++|++.+.++.+.++.+.                                     +.++|+.+|+++|.||++|||+
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~-------------------------------------~~~~~~~~w~~~i~g~~~t~y~   44 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAE-------------------------------------PVEENLLEWHGTIRGPPDTPYE   44 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEE-------------------------------------ECCCChhEEEEEEecCCCCCcc
Confidence            588999999988877677665                                     5677999999999999999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||.|++++.||++||.+||.|+|.|+++||||+++|
T Consensus        45 g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G   80 (141)
T cd00195          45 GGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG   80 (141)
T ss_pred             CCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence            999999999999999999999999999999999554

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0418|consensus

Probab=99.80  E-value=1.5e-19  Score=144.47  Aligned_cols=125  Identities=26%  Similarity=0.371  Sum_probs=102.5

Q ss_pred             CChHHHHHHHHHHHHhhhCC---CCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc
Q psy621            5 PTSSALRALSMEYKSLQEEP---VEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN   79 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~---~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~   79 (289)
                      |+. +.+||+||.+++.+++   ..||.++.++ +|+.+.+..|.||+||||+||.|.|.|  |+.||++||+|+|.+++
T Consensus         1 m~~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn-~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkI   78 (200)
T KOG0418|consen    1 MSN-AFKRINREQKEVLDDPEISQAGIIVEMVN-ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKI   78 (200)
T ss_pred             Ccc-HHHHHHHHHHHhccChhhhhcceEEEEcc-CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeee
Confidence            344 8999999999999998   6899999755 688999999999999999999997665  89999999999999999


Q ss_pred             ccccee-ccceeeCccccCccchHH---------HHHhhhcc--c-----ccccCCCchhhHHHHhHHh
Q psy621           80 LTKTFE-ASSFISAPLYTESWLRSF---------VSYVRRNQ--D-----FLNVTIDTREGFLKTLNDL  131 (289)
Q Consensus        80 ~~~~~e-~~~~~~~~~~~~~Wl~~y---------~~~l~~~~--~-----~~n~~~~~~~~F~~~l~~~  131 (289)
                      +|||+. .+|.+|++++.+.|-.++         +.+|+..+  +     .+++..++.+-|+..++-|
T Consensus        79 wHPnVSs~tGaICLDilkd~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~W  147 (200)
T KOG0418|consen   79 WHPNVSSQTGAICLDILKDQWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYW  147 (200)
T ss_pred             ecCCCCcccccchhhhhhcccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999995 457899999999997774         44555321  1     1334456777888887773

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=99.80  E-value=1.8e-19  Score=143.98  Aligned_cols=92  Identities=36%  Similarity=0.615  Sum_probs=79.1

Q ss_pred             HHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceeccccccceeccce
Q psy621           12 ALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIENLTKTFEASSF   89 (289)
Q Consensus        12 Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~~~~~~~e~~~~   89 (289)
                      ||+||++++++++++|+.+.+.+++|+.+|++.|.||++|+|+||.|++.  ++.+||++||+++|.+.++||++..+|.
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~   80 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR   80 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999766559999999999999999999987555  5899999999999999999999999999


Q ss_pred             eeCccccC-ccchHH
Q psy621           90 ISAPLYTE-SWLRSF  103 (289)
Q Consensus        90 ~~~~~~~~-~Wl~~y  103 (289)
                      +|.+++.. .|.+++
T Consensus        81 icl~~l~~~~W~p~~   95 (140)
T PF00179_consen   81 ICLDILNPESWSPSY   95 (140)
T ss_dssp             BGHGGGTTTTC-TTS
T ss_pred             chhhhhhcccCCccc
Confidence            99998864 598874

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0424|consensus

Probab=99.79  E-value=4.6e-19  Score=135.44  Aligned_cols=88  Identities=28%  Similarity=0.525  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ....|+.+|-.+..++.++++++-...+.                                ....|+..|.|.|.||++|
T Consensus         4 ~~~~rl~eErk~wrk~hp~gf~AkP~~~~--------------------------------dg~~nl~~Wec~IPG~~~t   51 (158)
T KOG0424|consen    4 IALNRLAEERKKWRKDHPFGFYAKPVKNA--------------------------------DGTLNLMNWECGIPGKKGT   51 (158)
T ss_pred             hHHHHHHHHHHHHhhcCCCceeeeccCCC--------------------------------CCcceeEEEEeecCCCCCC
Confidence            34567888888888888888776421110                                1245899999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +||||.|.+++.||++||.+||+++|.++.||||||.+|.
T Consensus        52 ~wEGg~y~l~v~F~~dyP~~PPkckF~~pl~HPNVypsgt   91 (158)
T KOG0424|consen   52 PWEGGLYKLTVNFPDDYPSSPPKCKFKPPLFHPNVYPSGT   91 (158)
T ss_pred             cCcCceEEEEEeCCccCCCCCCccccCCCCcCCCcCCCCc
Confidence            9999999999999999999999999999999999999875

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.78  E-value=6.1e-19  Score=141.71  Aligned_cols=80  Identities=44%  Similarity=0.962  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      +|+++|++.+.++.+.++.++                                    +..++|+++|+++|.||++|||+
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~------------------------------------~~~~~~~~~w~~~i~gp~~~~y~   44 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAY------------------------------------PVDEDNLLEWTGTIVGPPGTPYE   44 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEE------------------------------------ECCCCChheEEEEEEcCCCCCcC
Confidence            378899999988876666665                                    12334999999999999999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||.|++.|.||++||++||+|+|.|+++||||+++|
T Consensus        45 g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G   80 (145)
T smart00212       45 GGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG   80 (145)
T ss_pred             CcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence            999999999999999999999999999999999855

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=99.77  E-value=1.4e-18  Score=138.93  Aligned_cols=92  Identities=28%  Similarity=0.532  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceeccc
Q psy621           11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEASS   88 (289)
Q Consensus        11 ~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~~   88 (289)
                      |||+||++++++++++|+.+.+ .++|+++|.+.+.||++++|+||.|.+.+  +++||.+||.++|.+.++||++..+|
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~-~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G   80 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEP-VEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENG   80 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEE-CCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCC
Confidence            7999999999999999999996 66699999999999999999999876655  89999999999999999999999999


Q ss_pred             eeeCccccCc-cchHH
Q psy621           89 FISAPLYTES-WLRSF  103 (289)
Q Consensus        89 ~~~~~~~~~~-Wl~~y  103 (289)
                      .+|.+.+... |.+++
T Consensus        81 ~icl~~l~~~~W~p~~   96 (141)
T cd00195          81 KICLSILKTHGWSPAY   96 (141)
T ss_pred             CCchhhcCCCCcCCcC
Confidence            9999998776 98885

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0427|consensus

Probab=99.76  E-value=3.9e-18  Score=128.14  Aligned_cols=97  Identities=23%  Similarity=0.371  Sum_probs=88.2

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc-cc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN-LT   81 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~-~~   81 (289)
                      ++..|.+||+|||.+|+.+||+|+...  ..||+..|.+.+.|.++|.|+|..|.+.+  ++.||+..|+|.|.-++ .|
T Consensus        12 ls~~at~RLqKEl~e~q~~pP~G~~~~--v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~H   89 (161)
T KOG0427|consen   12 LSKIATNRLQKELSEWQNNPPTGFKHR--VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPLH   89 (161)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCcceee--cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCCC
Confidence            345588999999999999999999997  45699999999999999999998887766  79999999999999884 89


Q ss_pred             cceeccceeeCccccCccchHH
Q psy621           82 KTFEASSFISAPLYTESWLRSF  103 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~~~Wl~~y  103 (289)
                      |.+.++|++|++++.++|.++.
T Consensus        90 PHiYSNGHICL~iL~d~WsPAm  111 (161)
T KOG0427|consen   90 PHIYSNGHICLDILYDSWSPAM  111 (161)
T ss_pred             CceecCCeEEEEeecccCCcch
Confidence            9999999999999999999984

>KOG0424|consensus

Probab=99.76  E-value=5.7e-18  Score=129.49  Aligned_cols=99  Identities=23%  Similarity=0.369  Sum_probs=90.7

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCC----CCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIE   78 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~----~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~   78 (289)
                      ||+.++.||+.|-+.+.++.+-|+.+.|+..    .|+..|.|.|-|+++|+||||.|.|.+  +++||.+||+++|...
T Consensus         1 ~s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~p   80 (158)
T KOG0424|consen    1 MSGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPP   80 (158)
T ss_pred             CcchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCC
Confidence            5678899999999999999999999997643    379999999999999999999998776  6999999999999999


Q ss_pred             ccccceeccceeeCccccCc--cchHH
Q psy621           79 NLTKTFEASSFISAPLYTES--WLRSF  103 (289)
Q Consensus        79 ~~~~~~e~~~~~~~~~~~~~--Wl~~y  103 (289)
                      .+|||+..+|.+|++++.+.  |.++.
T Consensus        81 l~HPNVypsgtVcLsiL~e~~~W~pai  107 (158)
T KOG0424|consen   81 LFHPNVYPSGTVCLSILNEEKDWRPAI  107 (158)
T ss_pred             CcCCCcCCCCcEehhhhccccCCCchh
Confidence            99999999999999999776  98874

>KOG0894|consensus

Probab=99.75  E-value=2.2e-18  Score=140.41  Aligned_cols=96  Identities=28%  Similarity=0.559  Sum_probs=86.6

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEE--EEEEcCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF--KAIIEGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~v~v~~~yp~~~P~v~~~~~~~~~   82 (289)
                      ++.+|.|||+|||+.|+++|.+++.++| .++|+.+||.++.||+||||+||.|  +|.++.+||++||.++..+..  .
T Consensus         2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P-~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPN--G   78 (244)
T KOG0894|consen    2 ASKAAVKRLQKEYRALCKDPVPYIVARP-NPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPN--G   78 (244)
T ss_pred             cchHHHHHHHHHHHHHHhCCchhhccCC-CccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCC--C
Confidence            3788999999999999999999999996 8889999999999999999999988  677799999999999977765  3


Q ss_pred             ceeccceeeCccc---cCccchHH
Q psy621           83 TFEASSFISAPLY---TESWLRSF  103 (289)
Q Consensus        83 ~~e~~~~~~~~~~---~~~Wl~~y  103 (289)
                      +|..+...|++++   .++|-+.+
T Consensus        79 RFktntRLCLSiSDfHPdsWNP~W  102 (244)
T KOG0894|consen   79 RFKTNTRLCLSISDFHPDSWNPGW  102 (244)
T ss_pred             ceecCceEEEeccccCcCcCCCcc
Confidence            7889999999998   57887774

>TIGR00917 2A060601 Niemann-Pick C type protein family

Probab=99.75  E-value=1.4e-18  Score=179.35  Aligned_cols=169  Identities=17%  Similarity=0.320  Sum_probs=140.2

Q ss_pred             EEEEEEcCCCCCCCcccceec--------cccccceeccceeeCccccCccchHHHHHhhhccc----------ccc---
Q psy621           57 YFKAIIEGELPHWDVNVQNQI--------ENLTKTFEASSFISAPLYTESWLRSFVSYVRRNQD----------FLN---  115 (289)
Q Consensus        57 ~~~v~v~~~yp~~~P~v~~~~--------~~~~~~~e~~~~~~~~~~~~~Wl~~y~~~l~~~~~----------~~n---  115 (289)
                      .+.+++..+++++.++.+.++        ..++..+++..++.++  +.+|+++|.+|+++.+.          ..+   
T Consensus       853 pvy~Vv~~~~dy~~~~~q~~lc~~~~c~~~sl~~~~~~~~~i~~~--~~sWlddf~~wl~~~~~cc~~~~~~~~~c~~~~  930 (1204)
T TIGR00917       853 PVYFVLKGDYNYTDSESQNKVCTGGGCNKDSIVNVFNNLTYIAKP--ASSWLDDYFDWASPQSSCCCRKFTNGTFCNGPD  930 (1204)
T ss_pred             cEEEEEcCCCCCCCHHHHHHHhcccCCcHHHHHHhhcccchhcCC--chHHHHHHHHHhCccccceeecCCCCCcCCCcc
Confidence            456777889999999877766        5677788888887644  79999999999986311          000   


Q ss_pred             ----------c---CCCchhhHHHHhHHhhccCCC---------CCccceEEcCC-CCeEEEEEEEEEEEecCCchHHHH
Q psy621          116 ----------V---TIDTREGFLKTLNDLWLFKPN---------PFSLDIKFNDD-GTKIIASRFMIQAVNITDGNMEKE  172 (289)
Q Consensus       116 ----------~---~~~~~~~F~~~l~~~~~~~~~---------~~~~di~~~~~-~~~i~asrf~~~~~~~~~~~~~~~  172 (289)
                                .   ..+++++|++.|+.|+...+.         +|+.+++++++ ++.|.||||+++++++.++++.++
T Consensus       931 ~~~~~c~~~~~~~~~~p~~~~F~~~l~~fl~~~~~~~c~~gg~~~y~~~v~~~~~~~~~I~aS~f~~~h~~l~~~~d~i~ 1010 (1204)
T TIGR00917       931 PSCFRCADLSSNAQGRPSTTQFKEYLPFFLNDNPSADCAKGGHAAYSSAVDLQGHANTIIQASYFMTYHTPLNTQADFIN 1010 (1204)
T ss_pred             ccccccccccccccCCCCHHHHHHHHHHHhcCCCccccccccccccccceEeecCCCceEEEEEEEEeccCCCCHHHHHH
Confidence                      0   123467899999997776552         58899998754 346999999999999999999999


Q ss_pred             HHHHHHHHHHh----CCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeecc
Q psy621          173 MVKELRRIAHE----SSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVK  227 (289)
Q Consensus       173 ~~~~~r~ia~~----~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i  227 (289)
                      +++++|+||++    .++++++|+++|+|+|||++|++++++++++|+++|++|+++|+
T Consensus      1011 a~~~~R~ia~~i~~~~~~~vfpys~~~vf~eQY~~i~~~~~~~l~~a~~~v~~V~~l~l 1069 (1204)
T TIGR00917      1011 ALRAAREISANVTRSLKMEVFPYSVFYVFFEQYLTIWSDALINLGISLGAIFIVTLVLL 1069 (1204)
T ss_pred             HHHHHHHHHHHhhhccCCccccCcCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999995    46899999999999999999999999999999999999999997

The model describes Niemann-Pick C type protein in eukaryotes. The defective protein has been associated with Niemann-Pick disease which is described in humans as autosomal recessive lipidosis. It is characterized by the lysosomal accumulation of unestrified cholesterol. It is an integral membrane protein, which indicates that this protein is most likely involved in cholesterol transport or acts as some component of cholesterol homeostasis.

>KOG0422|consensus

Probab=99.72  E-value=1.2e-17  Score=127.18  Aligned_cols=57  Identities=40%  Similarity=0.944  Sum_probs=54.3

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      .+++|++.|++.|. |++-||..|.|+++|.||.+||++||++.|.|+||||||++.|
T Consensus        27 ~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVDe~g   83 (153)
T KOG0422|consen   27 VDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVDEKG   83 (153)
T ss_pred             cccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCCCCC
Confidence            57889999999996 8999999999999999999999999999999999999999984

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.71  E-value=4.2e-17  Score=131.04  Aligned_cols=93  Identities=31%  Similarity=0.518  Sum_probs=85.0

Q ss_pred             HHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceeccc
Q psy621           11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEASS   88 (289)
Q Consensus        11 ~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~~   88 (289)
                      +||++|++++++++++|+.+.+..++|+++|++.+.||++++|+||.|.+.+  +++||.++|.+++.+.++||++..+|
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G   80 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG   80 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence            5999999999999999999987655699999999999999999999876655  89999999999999999999999999


Q ss_pred             eeeCcccc-CccchHH
Q psy621           89 FISAPLYT-ESWLRSF  103 (289)
Q Consensus        89 ~~~~~~~~-~~Wl~~y  103 (289)
                      .+|.+.+. +.|.+++
T Consensus        81 ~icl~~l~~~~W~p~~   96 (145)
T smart00212       81 EICLDILKQEKWSPAT   96 (145)
T ss_pred             CEehhhcCCCCCCCCC
Confidence            99999987 7898774

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0416|consensus

Probab=99.70  E-value=1.7e-17  Score=130.40  Aligned_cols=58  Identities=36%  Similarity=0.842  Sum_probs=55.4

Q ss_pred             CCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       230 ~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ..+++.++++.+.||.+|||+||+|++++.+|++||++.|.|.|.|+||||||+..+|
T Consensus        25 ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SG   82 (189)
T KOG0416|consen   25 INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASG   82 (189)
T ss_pred             ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccC
Confidence            4567999999999999999999999999999999999999999999999999999877

>KOG0422|consensus

Probab=99.68  E-value=8.7e-17  Score=122.41  Aligned_cols=125  Identities=21%  Similarity=0.345  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      .|.+||+|||.+|++++...+.-...+++|++.|++.+. |++-||..|.|++.|  +-+||++||.+.|.++++|||++
T Consensus         2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD   80 (153)
T KOG0422|consen    2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD   80 (153)
T ss_pred             chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence            468999999999999998877544468889999999988 889999999987766  78999999999999999999999


Q ss_pred             ccceeeCccc-cCccchHH------HHHhhhc-----ccccccC-----CCchhhHHHHhHHhhc
Q psy621           86 ASSFISAPLY-TESWLRSF------VSYVRRN-----QDFLNVT-----IDTREGFLKTLNDLWL  133 (289)
Q Consensus        86 ~~~~~~~~~~-~~~Wl~~y------~~~l~~~-----~~~~n~~-----~~~~~~F~~~l~~~~~  133 (289)
                      ..|.+|+.+. ++.|.++-      +.++..-     +.+.+++     ..+...|.+++.+|-.
T Consensus        81 e~gqvClPiis~EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tk  145 (153)
T KOG0422|consen   81 EKGQVCLPIISAENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTK  145 (153)
T ss_pred             CCCceeeeeeecccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHH
Confidence            9999999985 68998872      2222211     2223332     3677778888877543

>KOG0894|consensus

Probab=99.68  E-value=1.6e-16  Score=129.60  Aligned_cols=74  Identities=32%  Similarity=0.707  Sum_probs=66.8

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      +....+|+++|.|.+++++-..+.+-                                     |+++|+.+||.+|.||+
T Consensus         3 ~k~a~kRl~keY~~l~k~Pv~~i~A~-------------------------------------P~p~nILEWHYvl~Gpe   45 (244)
T KOG0894|consen    3 SKAAVKRLQKEYRALCKDPVPYIVAR-------------------------------------PNPNNILEWHYVLRGPE   45 (244)
T ss_pred             chHHHHHHHHHHHHHHhCCchhhccC-------------------------------------CCccceeeeEEEeeCCC
Confidence            45677999999999999965454443                                     89999999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK  276 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~  276 (289)
                      +|||+||.|++++.||++||++||.|+++|+
T Consensus        46 dTPy~GG~YhGkl~FP~eyP~KPPaI~MiTP   76 (244)
T KOG0894|consen   46 DTPYYGGYYHGKLIFPPEYPFKPPAITMITP   76 (244)
T ss_pred             CCCccCceeeeEEeCCCCCCCCCCeeEEECC
Confidence            9999999999999999999999999999987

>KOG0423|consensus

Probab=99.65  E-value=8.3e-17  Score=126.56  Aligned_cols=82  Identities=34%  Similarity=0.631  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      +-.+.+++|++.+-..++-++.|+                                     ++++|+...++.|.||.||
T Consensus        10 ~vik~~~kEl~~l~~~PPdGIKV~-------------------------------------~NeeD~tdiqa~IeGP~GT   52 (223)
T KOG0423|consen   10 NVIKQLAKELKSLDESPPDGIKVV-------------------------------------VNEEDFTDIQADIEGPVGT   52 (223)
T ss_pred             HHHHHHHHHHHhcccCCCCceEEe-------------------------------------cChHHhHHHHhhccCCCCC
Confidence            345678999999988888888887                                     7999999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||++|+|+..+.+..|||.+||+-.|+|+||||||..+|
T Consensus        53 PYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVaaNG   91 (223)
T KOG0423|consen   53 PYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVAANG   91 (223)
T ss_pred             ccccceeeehhhhcCCCCCCCCcceeeeeeccCCcccCc
Confidence            999999999999999999999999999999999997766

>KOG0416|consensus

Probab=99.61  E-value=1.3e-15  Score=119.91  Aligned_cols=125  Identities=19%  Similarity=0.337  Sum_probs=100.7

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccce-
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTF-   84 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~-   84 (289)
                      ++.||+..|..+|..+.   ..+.. ..+++.++.+.+.||.+++|+||.++|.|  |+.||++.|++.|.++++|||+ 
T Consensus         3 ~~~rRid~Dv~KL~~s~---yeV~~-ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNID   78 (189)
T KOG0416|consen    3 SGKRRIDTDVMKLLMSD---YEVTI-INDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNID   78 (189)
T ss_pred             CcccchhhHHHHHHhcC---CeEEE-ecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCch
Confidence            56799999999998764   45553 45578999999999999999999987776  8999999999999999999999 


Q ss_pred             eccceeeCccccCccchHH------HHHhhh-----c-ccccccC-----CCchhhHHHHhHHhhccCC
Q psy621           85 EASSFISAPLYTESWLRSF------VSYVRR-----N-QDFLNVT-----IDTREGFLKTLNDLWLFKP  136 (289)
Q Consensus        85 e~~~~~~~~~~~~~Wl~~y------~~~l~~-----~-~~~~n~~-----~~~~~~F~~~l~~~~~~~~  136 (289)
                      |.+|.+|++...+-|.+.|      +.||-.     | .|++|..     ..+++.|...+++.-.+..
T Consensus        79 e~SGsVCLDViNQtWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA  147 (189)
T KOG0416|consen   79 EASGSVCLDVINQTWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYA  147 (189)
T ss_pred             hccCccHHHHHhhhhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence            5778999999999998886      334432     2 3455543     4688888888888766543

>KOG0428|consensus

Probab=99.55  E-value=9.7e-15  Score=121.35  Aligned_cols=96  Identities=28%  Similarity=0.560  Sum_probs=84.2

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEE--EEEEcCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF--KAIIEGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~v~v~~~yp~~~P~v~~~~~~~~   81 (289)
                      +..+++.|||+||.++|+ +|.+.+.+.+ .+||+++|+..|+||.||-|+||+|  +|.+|.+||++||.+...+..  
T Consensus         7 N~KnpaVkRlmkEa~El~-~Ptd~yha~p-lEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpN--   82 (314)
T KOG0428|consen    7 NLKNPAVKRLMKEAAELK-DPTDHYHAQP-LEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPN--   82 (314)
T ss_pred             cccCHHHHHHHHHHHHhc-Cchhhhhhcc-chhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCC--
Confidence            456789999999999999 8888888886 6779999999999999999999998  566699999999998766654  


Q ss_pred             cceeccceeeCccc---cCccchHH
Q psy621           82 KTFEASSFISAPLY---TESWLRSF  103 (289)
Q Consensus        82 ~~~e~~~~~~~~~~---~~~Wl~~y  103 (289)
                      .+||-+..+|++++   .+.|++++
T Consensus        83 GRFE~nkKiCLSISgyHPEtWqPSW  107 (314)
T KOG0428|consen   83 GRFEVNKKICLSISGYHPETWQPSW  107 (314)
T ss_pred             CceeeCceEEEEecCCCccccCcch
Confidence            48999999999998   57899986

>KOG0420|consensus

Probab=99.55  E-value=7.8e-15  Score=115.83  Aligned_cols=126  Identities=24%  Similarity=0.338  Sum_probs=96.5

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEe-cCCCCce--EEEEEEeCCCCCCccCcE--EEEEEcCCCCCCCcccceeccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKL-VNDDNLF--EWEVAIFGPPDTLYQGGY--FKAIIEGELPHWDVNVQNQIEN   79 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~-~~~~n~~--~w~~~i~gp~~t~y~g~~--~~v~v~~~yp~~~P~v~~~~~~   79 (289)
                      ..+.|.-||++|+.++.-  +++++... ...+++.  +...+|. |++.+|+||.  |.+.|++.||+.||+|.+.+++
T Consensus        25 ~~s~a~lrl~~di~elnL--p~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV  101 (184)
T KOG0420|consen   25 KVSAALLRLKKDILELNL--PPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKV  101 (184)
T ss_pred             cccHHHHHHHhhhhhccC--CCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeecc
Confidence            456677888888887754  44444321 1233333  4777777 9999999996  4667789999999999999999


Q ss_pred             cccceeccceeeCccccCccchH----------HHHHhhhc-ccccccCC-----CchhhHHHHhHHhhc
Q psy621           80 LTKTFEASSFISAPLYTESWLRS----------FVSYVRRN-QDFLNVTI-----DTREGFLKTLNDLWL  133 (289)
Q Consensus        80 ~~~~~e~~~~~~~~~~~~~Wl~~----------y~~~l~~~-~~~~n~~~-----~~~~~F~~~l~~~~~  133 (289)
                      +|||++..|.+|++++.+.|-|.          +.-|++.+ +|++|..+     .+++.|..+++....
T Consensus       102 ~HPNId~~GnVCLnILRedW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~  171 (184)
T KOG0420|consen  102 YHPNIDLDGNVCLNILREDWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMS  171 (184)
T ss_pred             ccCCcCCcchHHHHHHHhcCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHh
Confidence            99999999999999999999887          23455555 67777654     688889988888554

>KOG0420|consensus

Probab=99.53  E-value=1.4e-14  Score=114.35  Aligned_cols=51  Identities=43%  Similarity=0.830  Sum_probs=48.5

Q ss_pred             eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          236 EWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       236 ~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +++++|. |+++.|+||.|.|.+++|+.||++||+|+++|+||||||+.+|.
T Consensus        61 ~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~~Gn  111 (184)
T KOG0420|consen   61 EFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDLDGN  111 (184)
T ss_pred             eEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccccCCcCCcch
Confidence            6999886 99999999999999999999999999999999999999998874

>KOG0423|consensus

Probab=99.52  E-value=1.1e-14  Score=114.73  Aligned_cols=99  Identities=24%  Similarity=0.400  Sum_probs=90.8

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      +......|.+.||+++|..+|++||.+. ++++|+....+.|.||.+|||++|.|++.+  ..++|.+||+-.|.++++|
T Consensus         6 nlpp~vik~~~kEl~~l~~~PPdGIKV~-~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFH   84 (223)
T KOG0423|consen    6 NLPPNVIKQLAKELKSLDESPPDGIKVV-VNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFH   84 (223)
T ss_pred             CCChHHHHHHHHHHHhcccCCCCceEEe-cChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeecc
Confidence            3445578999999999999999999998 488899999999999999999999987765  6999999999999999999


Q ss_pred             cceeccceeeCccccCccchHH
Q psy621           82 KTFEASSFISAPLYTESWLRSF  103 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~~~Wl~~y  103 (289)
                      ||+..+|.+|.+.+...|.++.
T Consensus        85 PNVaaNGEICVNtLKkDW~p~L  106 (223)
T KOG0423|consen   85 PNVAANGEICVNTLKKDWNPSL  106 (223)
T ss_pred             CCcccCceehhhhhhcccCccc
Confidence            9999999999999999998884

>KOG0427|consensus

Probab=99.51  E-value=6.8e-14  Score=105.35  Aligned_cols=83  Identities=25%  Similarity=0.538  Sum_probs=73.5

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      .....|+++|+-++..+++.++..                                      -..+|+..|.+.+.|.+|
T Consensus        14 ~~at~RLqKEl~e~q~~pP~G~~~--------------------------------------~v~dnlqqWii~v~Ga~G   55 (161)
T KOG0427|consen   14 KIATNRLQKELSEWQNNPPTGFKH--------------------------------------RVTDNLQQWIIEVTGAPG   55 (161)
T ss_pred             HHHHHHHHHHHHHHhcCCCCccee--------------------------------------ecccchheeEEEEecCCc
Confidence            345578999999998887766655                                      245799999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCC-cCCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV-WHPNVYEGTA  287 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i-~hpnv~~~~~  287 (289)
                      |.|+|.+|.|.++||+.||++.|+|.|..++ .||+||++|.
T Consensus        56 TLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~HPHiYSNGH   97 (161)
T KOG0427|consen   56 TLYANETYQLQVEFPEHYPMESPQVMFVGPAPLHPHIYSNGH   97 (161)
T ss_pred             eeecCcEEEEEEecCCCCCCCCCeEEEecCCCCCCceecCCe
Confidence            9999999999999999999999999999998 8999999984

>TIGR00918 2A060602 The Eukaryotic (Putative) Sterol Transporter (EST) Family

Probab=99.48  E-value=8.5e-15  Score=149.32  Aligned_cols=182  Identities=16%  Similarity=0.194  Sum_probs=129.1

Q ss_pred             EeCCCCCCccCcEEEEEEcCCCCCCCcccceeccccccceeccceeeCccc---cCccchHHHHHhhhcc---c-c----
Q psy621           45 IFGPPDTLYQGGYFKAIIEGELPHWDVNVQNQIENLTKTFEASSFISAPLY---TESWLRSFVSYVRRNQ---D-F----  113 (289)
Q Consensus        45 i~gp~~t~y~g~~~~v~v~~~yp~~~P~v~~~~~~~~~~~e~~~~~~~~~~---~~~Wl~~y~~~l~~~~---~-~----  113 (289)
                      ++...+.+|..+...++.+.++++  |..+.++..++..|++.+++.++..   +.+||++|.+||+..+   + .    
T Consensus       729 yf~~~~~yF~~~~vy~V~~~~~dy--~~~q~~l~~l~~~f~~~~~i~~~~~~~~~~~WLddf~~wL~~lq~~~d~~~~~g  806 (1145)
T TIGR00918       729 FLDAQFRYFSFYNMYAVTQGNFDY--PTQQQLLYDLHQSFSSVKYVLKEDNGQLPRMWLHYFRDWLQGLQKAFDEDWRDG  806 (1145)
T ss_pred             HHHHHHHhcCcCceEEEeCCCCCc--hHHHHHHHHHHHHhccCceeecCCCCCccchHHHHHHHHHHHhhhhhhhhhhhc
Confidence            333344455443233444545666  5566678889999999999988753   5799999999988510   0 0    


Q ss_pred             -------cc--------------------------------c---CCCchhhHHHHhHHhhccCCCC-------------
Q psy621          114 -------LN--------------------------------V---TIDTREGFLKTLNDLWLFKPNP-------------  138 (289)
Q Consensus       114 -------~n--------------------------------~---~~~~~~~F~~~l~~~~~~~~~~-------------  138 (289)
                             .|                                +   ...+.+.|++.|+.|+...+..             
T Consensus       807 ~~~~~~~~n~s~~~~~~~~l~~qtg~~~~p~~~~~~~~~r~v~~~g~~~~~~F~~yL~~wl~~~~~~y~~sq~~~~p~~~  886 (1145)
T TIGR00918       807 RITKENYRNGSDDAVLAYKLLVQTGHRDKPVDKEQLTTQRLVNADGIINPNAFYIYLSAWVSNDPVAYAASQANIYPHPP  886 (1145)
T ss_pred             ccccccccCCccccchhhhhcccccccCCccccccccccccccccCCCCHHHHHHHHHHHHcCCcchhhcccccccCCcc
Confidence                   00                                0   0234568999999977644322             


Q ss_pred             -Cccc-eEEcCCCCeEEE------EEEEEEEEecCCchHHHHHHHHHHHHHHhC-CC--CeEeeccccccccchhhhcch
Q psy621          139 -FSLD-IKFNDDGTKIIA------SRFMIQAVNITDGNMEKEMVKELRRIAHES-SL--NVSVFHPYFVFFDQFELVRPT  207 (289)
Q Consensus       139 -~~~d-i~~~~~~~~i~a------srf~~~~~~~~~~~~~~~~~~~~r~ia~~~-~~--~~~~~~~~~~~~DQ~~~i~~~  207 (289)
                       |..+ ..++.++..|.|      +||++++++++++.+.+++++++|+|+++. ..  .++.++..|+|+|||..+.+.
T Consensus       887 ~~~~~~~~~~~~~~~I~as~~i~~~~F~fy~~~L~~~~d~i~al~~~R~Ia~~~~~~~~~vf~~g~~fvf~eQy~~i~~~  966 (1145)
T TIGR00918       887 EWLHDKNDYDPENLRIPAAEPLEYAQFPFYLNGLRETSQFVEAIEHVRAICNNYEGFGLPSYPSGYPFLFWEQYMGLRHW  966 (1145)
T ss_pred             hhcccccccccccccccccccchhheeeEEEcCCCCHHHHHHHHHHHHHHHHhhhhcCceeccCCCceeHHHHHHHHHHH
Confidence             2211 122211122444      489999999999999999999999999996 34  455556799999999999999


Q ss_pred             hhhhhhhhceeeeEEeeeccc
Q psy621          208 TIQSMLGGSVTMMFIRFRVKL  228 (289)
Q Consensus       208 tiq~~~~a~~~m~~v~~~~i~  228 (289)
                      +++++++|++||++|++++++
T Consensus       967 ~~~~l~~al~~~fvV~~lll~  987 (1145)
T TIGR00918       967 LLLSISVVLACTFLVCALLLL  987 (1145)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999999987

>KOG0428|consensus

Probab=99.40  E-value=7.5e-13  Score=110.19  Aligned_cols=48  Identities=48%  Similarity=0.999  Sum_probs=46.5

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK  276 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~  276 (289)
                      +-++|+++|+++|.||.||-|+||+|+++|.||.+||++||.+..+|+
T Consensus        34 plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTp   81 (314)
T KOG0428|consen   34 PLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTP   81 (314)
T ss_pred             cchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcC
Confidence            679999999999999999999999999999999999999999999987

>KOG0896|consensus

Probab=98.97  E-value=1.2e-09  Score=83.33  Aligned_cols=55  Identities=33%  Similarity=0.628  Sum_probs=51.6

Q ss_pred             CcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       233 ~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      -+..|...|.||+.|+||+.+|.|+|.+-++||..||.|+|.|+|.-+-|++.+|
T Consensus        37 tl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g   91 (138)
T KOG0896|consen   37 TLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNG   91 (138)
T ss_pred             eEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCC
Confidence            3568999999999999999999999999999999999999999998888888776

>KOG0429|consensus

Probab=98.93  E-value=7e-09  Score=85.47  Aligned_cols=59  Identities=25%  Similarity=0.507  Sum_probs=53.7

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCC--CCCeEEEecCCcCCCCCCCCCc
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPY--SPPTIRFLTKVWHPNVYEGTAQ  288 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~--~pP~v~f~t~i~hpnv~~~~~~  288 (289)
                      |+-.|-+.|.++|++..| .|+||+|+|+|.+|++||.  .-|+|.|.+.+|||+|...+++
T Consensus        43 PSyan~l~WFGViFvr~G-iyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp~ske  103 (258)
T KOG0429|consen   43 PSYANKLLWFGVIFVRKG-IYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICPKSKE  103 (258)
T ss_pred             ccccccceEEEEEEEecc-cccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCCCccc
Confidence            678899999999997765 8999999999999999995  5699999999999999988765

>KOG0895|consensus

Probab=98.85  E-value=2.3e-09  Score=106.15  Aligned_cols=89  Identities=19%  Similarity=0.240  Sum_probs=78.6

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceecc---cc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIE---NL   80 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~---~~   80 (289)
                      +..-.+|++||++.+.++.++|+.+.+ .+..+....+.|.||.++||++|.|.+.  .|..||..||.+...+.   .+
T Consensus       280 s~~~skrv~ke~~llskdlpEgifvrp-~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~  358 (1101)
T KOG0895|consen  280 SKNWSKKVAKELKLLSKDLPEGIFVRP-DEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRL  358 (1101)
T ss_pred             chhhHHHHHHHhhhhcccCCCCccccc-cccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeeccceee
Confidence            445679999999999999999999995 7778889999999999999999976544  47999999999998876   67


Q ss_pred             ccceeccceeeCccc
Q psy621           81 TKTFEASSFISAPLY   95 (289)
Q Consensus        81 ~~~~e~~~~~~~~~~   95 (289)
                      .|++.++|.+|++++
T Consensus       359 nPNlYn~GKVcLslL  373 (1101)
T KOG0895|consen  359 NPNLYNDGKVCLSLL  373 (1101)
T ss_pred             cCCcccCceEEeeee
Confidence            899999999999986

>KOG1933|consensus

Probab=98.81  E-value=2.9e-09  Score=108.21  Aligned_cols=170  Identities=16%  Similarity=0.237  Sum_probs=126.5

Q ss_pred             EEEEEcCCCCCCCcccceeccccc-----------cce-eccceeeCccccCccchHHHHHhhhcccc------------
Q psy621           58 FKAIIEGELPHWDVNVQNQIENLT-----------KTF-EASSFISAPLYTESWLRSFVSYVRRNQDF------------  113 (289)
Q Consensus        58 ~~v~v~~~yp~~~P~v~~~~~~~~-----------~~~-e~~~~~~~~~~~~~Wl~~y~~~l~~~~~~------------  113 (289)
                      ...++..+++++.|..+..+-...           +.. +............+|+++|..|+...+.-            
T Consensus       816 vyfv~k~~~~~s~~~~Qn~iC~~~~c~~~s~~~~i~~~~~~~e~t~~s~~~~~W~ddyl~w~~~~~~cCr~~~~~g~fc~  895 (1201)
T KOG1933|consen  816 VYFVLKGGLDLSSPKDQNLICSIAGCNDNSLRNQIASAAEAPEQTYISRPASSWLDDYLVWLSPQSSCCRLKPDPGQFCP  895 (1201)
T ss_pred             EEEEecCCCCCCChhcccceecccccCCcchhhhhhhcccCCcceeeccccccccchhheeecccCCccccCCCCCCcCC
Confidence            345556788999998875332210           111 12222334444689999999999853200            


Q ss_pred             --------------ccc--CCCchhhHHHHhHHhhccCCC---------CCccceEEcCCCC-eEEEEEEEEEEEecCCc
Q psy621          114 --------------LNV--TIDTREGFLKTLNDLWLFKPN---------PFSLDIKFNDDGT-KIIASRFMIQAVNITDG  167 (289)
Q Consensus       114 --------------~n~--~~~~~~~F~~~l~~~~~~~~~---------~~~~di~~~~~~~-~i~asrf~~~~~~~~~~  167 (289)
                                    .+.  ..++.++|++.|+.|....|+         .|+.+|.+..++. .|+|++|++.++++.+.
T Consensus       896 ~~~~~~~c~~c~~~~~~~~~~Ps~~~F~~~L~~fln~~p~~~C~~gg~a~y~~av~l~~~~~~~iqas~F~tyh~~l~ns  975 (1201)
T KOG1933|consen  896 PSLNDERCSPCRITSNSLSNRPSIEQFYKYLPWFLNDTPSSECAKGGHAAYSSAVSLTFTHEGGIQASYFMTYHTPLSNS  975 (1201)
T ss_pred             CCcccccCCccccCCcccccCccHHHHhhhchhhccCCCCcccCCCCceeeecceEEEecCcccchhhhhhhhccccccH
Confidence                          000  136678899999998777664         3778888876543 39999999999999999


Q ss_pred             hHHHHHHHHHHHHHHhC-----CCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeecc
Q psy621          168 NMEKEMVKELRRIAHES-----SLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVK  227 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~-----~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i  227 (289)
                      .+...++++.|+++.+.     ..++++|+++|+|+|||..|++.|+..+.++++..++|+.++.
T Consensus       976 ~d~~~alr~ar~~s~~i~r~~~~~~vfpys~fy~fyEqylti~~~~~~~l~i~i~~iF~v~~~~l 1040 (1201)
T KOG1933|consen  976 SDFIKALRAARKLSADITRSLKGVEVFPYSVFYSFYEQYLTIWTDTLTNLGIDIVAIFLVTSVLL 1040 (1201)
T ss_pred             HHHHHHHHHhhhhhhhhhhcccccceeeeeeehhHHHHHHHHhhhhhhhhhHHHHHHHHHHHHhh
Confidence            99999999999999983     4789999999999999999999999999998888777777643

>KOG0895|consensus

Probab=98.65  E-value=7e-08  Score=95.89  Aligned_cols=84  Identities=29%  Similarity=0.534  Sum_probs=74.0

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      +.+..++..++|+.++++.+.++++-                                     +.+.+++..++.|.||.
T Consensus       280 s~~~skrv~ke~~llskdlpEgifvr-------------------------------------p~e~RMd~I~alIig~~  322 (1101)
T KOG0895|consen  280 SKNWSKKVAKELKLLSKDLPEGIFVR-------------------------------------PDEGRMDLIKALIIGPD  322 (1101)
T ss_pred             chhhHHHHHHHhhhhcccCCCCcccc-------------------------------------ccccccceeeeEEecCC
Confidence            34556788899999999877665553                                     78889999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecC---CcCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK---VWHPNVYEGT  286 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~---i~hpnv~~~~  286 (289)
                      +|||++|+|.+.|.||..||..||.|+++|.   .++||.|.+|
T Consensus       323 gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R~nPNlYn~G  366 (1101)
T KOG0895|consen  323 GTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVRLNPNLYNDG  366 (1101)
T ss_pred             CCCCcCCceeeEeecCCCCCCCCceeEEeeccceeecCCcccCc
Confidence            9999999999999999999999999999988   4899999876

>KOG0896|consensus

Probab=98.24  E-value=2.3e-06  Score=65.51  Aligned_cols=97  Identities=24%  Similarity=0.344  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHhhhCCCCCe-EEEecCCCC--ceEEEEEEeCCCCCCccCcEEEEEEc--CCCCCCCcccceecccccc
Q psy621            8 SALRALSMEYKSLQEEPVEGF-RVKLVNDDN--LFEWEVAIFGPPDTLYQGGYFKAIIE--GELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~-~~~~~~~~n--~~~w~~~i~gp~~t~y~g~~~~v~v~--~~yp~~~P~v~~~~~~~~~   82 (289)
                      +..-||.+||.+=++---+|- +-.+.+++|  +.+|...|.||+.|.||+..|.|.|.  ..||-.||.++|.+++-.+
T Consensus         5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~   84 (138)
T KOG0896|consen    5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN   84 (138)
T ss_pred             ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence            345678888887766544443 334444444  56899999999999999999988884  7999999999999999888


Q ss_pred             ceeccceeeCcc---ccCccchHHH
Q psy621           83 TFEASSFISAPL---YTESWLRSFV  104 (289)
Q Consensus        83 ~~e~~~~~~~~~---~~~~Wl~~y~  104 (289)
                      .+...+.+.+..   .+..|.++|.
T Consensus        85 gvn~~~g~Vd~~~i~~L~~W~~~y~  109 (138)
T KOG0896|consen   85 GVNSSNGVVDPRDITVLARWQRSYS  109 (138)
T ss_pred             ccccCCCccCccccchhhcccccch
Confidence            877666544442   1567888764

>KOG0429|consensus

Probab=97.52  E-value=0.00038  Score=57.92  Aligned_cols=120  Identities=18%  Similarity=0.234  Sum_probs=83.1

Q ss_pred             HHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEE--EEEEcCCCC--CCCcccceeccccccceec
Q psy621           11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF--KAIIEGELP--HWDVNVQNQIENLTKTFEA   86 (289)
Q Consensus        11 ~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~--~v~v~~~yp--~~~P~v~~~~~~~~~~~e~   86 (289)
                      --|..|+....+++.+||.+.| .-.|-+.|-.+|++- ...|.||.|  .|.+|.+||  ..-|++.|....+||.+-.
T Consensus        22 y~llAEf~lV~~ekL~gIyviP-Syan~l~WFGViFvr-~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~icp   99 (258)
T KOG0429|consen   22 YALLAEFVLVCREKLDGIYVIP-SYANKLLWFGVIFVR-KGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLICP   99 (258)
T ss_pred             HHHHHHHHHHHhccCCceEEcc-cccccceEEEEEEEe-cccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccCC
Confidence            3467788888899999999997 555778999999965 457899876  455688888  5569999999999998854


Q ss_pred             c-ceeeCccccCccc------hHHHHHhhhc-----ccc--------cccCCCchhhHHHHhHHhh
Q psy621           87 S-SFISAPLYTESWL------RSFVSYVRRN-----QDF--------LNVTIDTREGFLKTLNDLW  132 (289)
Q Consensus        87 ~-~~~~~~~~~~~Wl------~~y~~~l~~~-----~~~--------~n~~~~~~~~F~~~l~~~~  132 (289)
                      . +.-|++-.--.|-      ...+.|++..     .+.        +++..+++++|.+.+++--
T Consensus       100 ~skeLdl~raf~eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~v  165 (258)
T KOG0429|consen  100 KSKELDLNRAFPEWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECV  165 (258)
T ss_pred             CccceeHhhhhhhhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHH
Confidence            3 3445554434464      3456677642     111        2223367777877777643

>KOG1935|consensus

Probab=94.19  E-value=0.014  Score=57.94  Aligned_cols=159  Identities=16%  Similarity=0.203  Sum_probs=108.9

Q ss_pred             CCCcccceeccccccceeccceeeCccc---cCccchHHHHHhhhc----------c------ccccc------------
Q psy621           68 HWDVNVQNQIENLTKTFEASSFISAPLY---TESWLRSFVSYVRRN----------Q------DFLNV------------  116 (289)
Q Consensus        68 ~~~P~v~~~~~~~~~~~e~~~~~~~~~~---~~~Wl~~y~~~l~~~----------~------~~~n~------------  116 (289)
                      +.-|..+..+..+|..|.+.+++..+..   ...||--|.+||+.-          +      -..|.            
T Consensus       709 ~dyp~qQ~ll~dyh~sf~s~k~vik~~n~~l~~~Wl~~~r~WL~~lq~~fded~a~G~~~~~~~v~n~S~d~~lA~kL~~  788 (1143)
T KOG1935|consen  709 FDYPHQQQLLDDYHQSFGSSKYVIKNENEQLPKYWLHLFRDWLQSLQRAFDEDWAKGRFTLTSGVSNGSEDARLAYKLLC  788 (1143)
T ss_pred             CCcccHHHHHHHHHHHhccCceeecCCCCCCchHHHHHHHHHHHHHHHHHHHHHhcCccccccCCCCCChHHHHHHHHHH
Confidence            5556777788899999999999887765   356887777777631          0      00010            


Q ss_pred             --------------------CCCchhhHHHHhHHhhccCCC--------------CCccceEEcCCCC-----eEEEEEE
Q psy621          117 --------------------TIDTREGFLKTLNDLWLFKPN--------------PFSLDIKFNDDGT-----KIIASRF  157 (289)
Q Consensus       117 --------------------~~~~~~~F~~~l~~~~~~~~~--------------~~~~di~~~~~~~-----~i~asrf  157 (289)
                                          .+-+.+.|+..|-.|++..+-              .|..+  ++..+.     .+.=+-|
T Consensus       789 qtG~~~~~~~~l~k~rlVd~giInp~~FYnyLTaW~~~D~~~y~aSQa~~yP~pP~w~h~--~~~~~~iP~aePl~yaQm  866 (1143)
T KOG1935|consen  789 QTGSLDNDAGRLGKIRLVDAGIINPEAFYNYLTAWFNNDPMAYYASQASFYPTPPEWEHD--NDYAKEIPAAEPLEYAQM  866 (1143)
T ss_pred             hcCCccchhHhhhhhhhhhccccCHHHHHHhhhhhcccchHHhhhhccCCCCCCcccccc--ccccccccccccchhccC
Confidence                                224567799999998776331              25555  222111     1212222


Q ss_pred             EEEEEecCCchHHHHHHHHHHHHHHhC-CCCeEeec--cccccccchhhhcchhhhhhhhhceeeeEEeeeccc
Q psy621          158 MIQAVNITDGNMEKEMVKELRRIAHES-SLNVSVFH--PYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKL  228 (289)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~~r~ia~~~-~~~~~~~~--~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~  228 (289)
                      -.....+.+..+.+++.++.|..+.+. +++..-|.  +-|.|+|||..+..+.++-+.+-++|.++||-++..
T Consensus       867 PFyL~gL~dTa~Ivk~I~~iR~~c~~~~s~Gl~nyPsGiPF~FWEQYl~Lrg~l~~~IcIil~~vf~vcs~ll~  940 (1143)
T KOG1935|consen  867 PFYLNGLTDTADIVKAIESIRASCEEYTSLGLPNYPSGIPFTFWEQYLTLRGNLLQAICIILLAVFCVCSVLLL  940 (1143)
T ss_pred             chHHhhhhhHHHHHHHHHHHHHHHhhcccCCCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            223447788889999999999999995 34544444  567799999999999999999999999888877665

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=93.37  E-value=0.12  Score=40.58  Aligned_cols=37  Identities=32%  Similarity=0.624  Sum_probs=32.5

Q ss_pred             CCCEEEEEEEcCCCCCCCCCeEEEecCC---cCCCCCCCC
Q psy621          250 QGGYFKAHMKFPIDYPYSPPTIRFLTKV---WHPNVYEGT  286 (289)
Q Consensus       250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i---~hpnv~~~~  286 (289)
                      .|+.+.++|.+|++||..||.|...-+-   +=|||+.+|
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G   73 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDG   73 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCC
Confidence            7899999999999999999999888554   689998854

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=92.67  E-value=0.24  Score=37.04  Aligned_cols=47  Identities=21%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             CCCcceEEEEEeC--CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCC
Q psy621          231 DDNLFEWEVAIFG--PPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV  277 (289)
Q Consensus       231 ~~~~~~w~~~i~g--p~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i  277 (289)
                      ..+...+.+.+.+  ...+.-....+.+.+.||++||..||.|...+..
T Consensus        26 ~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~~   74 (113)
T PF05773_consen   26 SKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESPK   74 (113)
T ss_dssp             SSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEES
T ss_pred             cCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcCC
Confidence            3455566666632  2334445568999999999999999999877654

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=92.65  E-value=0.23  Score=38.37  Aligned_cols=53  Identities=25%  Similarity=0.359  Sum_probs=34.7

Q ss_pred             CcceEEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCeEEEecCC-----cCCCCCCCCCcC
Q psy621          233 NLFEWEVAIFGPPDTLYQGGYFKA--HMKFPIDYPYSPPTIRFLTKV-----WHPNVYEGTAQY  289 (289)
Q Consensus       233 ~~~~w~~~i~gp~~t~y~~g~~~~--~i~~~~~yP~~pP~v~f~t~i-----~hpnv~~~~~~~  289 (289)
                      .+....++|.    -.|+|..|.+  .|-+|.+||..||.|......     -+.+|+++|-.|
T Consensus        31 ~LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~   90 (121)
T PF05743_consen   31 LLLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVY   90 (121)
T ss_dssp             EEEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-
T ss_pred             eEEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEe
Confidence            4556667663    3588888865  555799999999999776432     244999988543

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=89.64  E-value=1.4  Score=32.56  Aligned_cols=27  Identities=30%  Similarity=0.503  Sum_probs=23.0

Q ss_pred             CCCEEEEEEEcCCCCCCCCCeEEEecC
Q psy621          250 QGGYFKAHMKFPIDYPYSPPTIRFLTK  276 (289)
Q Consensus       250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~  276 (289)
                      ..-...+.+.+|++||..+|.|.+.+.
T Consensus        39 ~~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       39 QYVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             cceEEEEEEECCCCCCCCCCCeEEECC
Confidence            345689999999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	289
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		3e-24
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		3e-24
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		7e-19
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-17
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-13
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		3e-13
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		3e-13
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		3e-13
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		5e-13
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		5e-13
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		5e-13
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		5e-13
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-13
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		6e-13
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		6e-13
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		7e-13
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		8e-13
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		1e-12
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		6e-12
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		8e-12
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		9e-12
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		1e-11
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		1e-11
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		3e-11
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		3e-11
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		4e-11
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		4e-11
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		5e-11
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		5e-11
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		5e-11
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		5e-11
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		5e-11
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-11
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		5e-11
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		5e-11
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		5e-11
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		5e-11
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		6e-11
3jvz_A	146	E2~ubiquitin-Hect Length = 146		6e-11
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		6e-11
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-11
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		6e-11
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		6e-11
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-11
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		7e-11
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		8e-11
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-10
1jas_A	152	Hsubc2b Length = 152		2e-10
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		4e-10
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		7e-10
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-09
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-09
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		6e-09
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		9e-09
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-08
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-08
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		2e-08
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		2e-08
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		2e-08
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		2e-08
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		2e-08
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		2e-08
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		2e-08
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		2e-08
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		2e-08
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		2e-08
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		2e-08
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		2e-08
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		2e-08
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		2e-08
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		3e-08
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		8e-08
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		9e-08
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		1e-07
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		1e-07
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		1e-07
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		1e-07
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		1e-07
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		1e-07
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		1e-07
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		1e-07
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		2e-07
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		2e-07
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		2e-07
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		1e-06
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		1e-06
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		2e-06
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		7e-06
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		7e-06
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		8e-06
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		1e-05
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		1e-05
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		1e-05
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		3e-05
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		3e-05
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		3e-05
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		3e-05
4ds2_A	167	Ubiquitin Conjugating Enzyme (Putative) From Trypan		3e-05
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		4e-05
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		3e-04
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-04
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		4e-04
2c2v_C	142	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		7e-04
1j74_A	145	Crystal Structure Of Mms2 Length = 145		7e-04
2a4d_A	160	Structure Of The Human Ubiquitin-Conjugating Enzyme		8e-04
2hlw_A	170	Solution Structure Of The Human Ubiquitin-Conjugati		8e-04
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		8e-04
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		8e-04
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		9e-04

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA +KFPIDYPYSPP  RFLTK+WHPN+Y
Sbjct: 27  FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 86
Query: 284 E 284
           E
Sbjct: 87  E 87

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 54/61 (88%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA +KFPIDYPYSPP  RFLTK+WHPN+Y
Sbjct: 24  FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 83
Query: 284 E 284
           E
Sbjct: 84  E 84

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 47/59 (79%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           F   L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP  PP ++F+T++WHPNV
Sbjct: 37  FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNV 95

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 31/59 (52%), Positives = 48/59 (81%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           F   LV+D+++++WEV + GPPDTLY+GG+FKA + FP DYP  PP ++F++++WHPN+
Sbjct: 23  FSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI 81

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +N++N FEWE  I GP DT ++ G F A + FP+DYP SPP +RF  +++HPN+Y
Sbjct: 34  MNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 88

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +N++N FEWE  I GP DT ++ G F A + FP+DYP SPP +RF  +++HPN+Y
Sbjct: 28  MNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 82

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +N++N FEWE  I GP DT ++ G F A + FP+DYP SPP +RF  +++HPN+Y
Sbjct: 32  MNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 86

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 40/55 (72%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +N++N FEWE  I GP DT ++ G F A + FP+DYP SPP +RF  +++HPN+Y
Sbjct: 31  MNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 85

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D+LF W+  I GPPD+ YQGG F   + FP DYP+ PP I F TK++HPN+
Sbjct: 34  DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNI 84

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D+LF W+  I GPPD+ YQGG F   + FP DYP+ PP I F TK++HPN+
Sbjct: 34  DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNI 84

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D+LF W+  I GPPD+ YQGG F   + FP DYP+ PP I F TK++HPN+
Sbjct: 30  DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNI 80

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 29/59 (49%), Positives = 38/59 (64%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287
           + D N FEW   I GP  T Y+GG+F   +  P DYPY+PP I+F+TK+WHPN+   T 
Sbjct: 47  IKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTG 105

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 28/51 (54%), Positives = 36/51 (70%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D+LF W+  I GPPD+ YQGG F   + FP DYP+ PP I F TK++HPN+
Sbjct: 46  DDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTKIYHPNI 96

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 223 RFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           + +V LV D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+
Sbjct: 79  QIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 137
Query: 283 YEGTA 287
              T 
Sbjct: 138 SSVTG 142

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 71.2 bits (173), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 223 RFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           + +V LV D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+
Sbjct: 43  QIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 101
Query: 283 YEGTA 287
              T 
Sbjct: 102 SSVTG 106

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 223 RFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           + +V LV D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+
Sbjct: 28  QIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 86
Query: 283 YEGTA 287
              T 
Sbjct: 87  SSVTG 91

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 223 RFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           + +V LV D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+
Sbjct: 27  QIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 85
Query: 283 YEGTA 287
              T 
Sbjct: 86  SSVTG 90

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/65 (46%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 223 RFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           + +V LV D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+
Sbjct: 30  QIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNI 88
Query: 283 YEGTA 287
              T 
Sbjct: 89  SSVTG 93

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           DNLF+W   + GP DT+Y+   +K  ++FP DYPY PP ++F T  WHPNV
Sbjct: 36  DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNV 86

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D+LF W+  I GPP++ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 31  DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D+LF W+  I GP D+ YQGG F   + FP DYP+ PP + F TK++HPN+
Sbjct: 33  DDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTKIYHPNI 83

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           D+N+  W   IFGP DT + GG FK  ++F  DYP  PPT+RF+++++HPN+Y
Sbjct: 30  DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIY 82

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 30  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +++N+F W+  I GPPDT Y  G F A ++FP DYP SPP + F   + HPN+Y
Sbjct: 30  SENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D+L+ W+ +I GP D+ Y GG F   + FP DYP+ PP I F TK++HPN+
Sbjct: 29  DDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYHPNI 79

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +DN+  WE  IFGP +T ++ G FK  ++F  +YP  PPT++F++K++HPNVY
Sbjct: 30  EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY 82

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 38  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 88

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 38  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 88

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 28  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 78

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 65.1 bits (157), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 33  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 83

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 31  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 81

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 27  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 77

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 30  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 30  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 25/53 (47%), Positives = 39/53 (73%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +DN+  WE  IFGP +T ++ G FK  ++F  +YP  PPT++F++K++HPNVY
Sbjct: 33  EDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY 85

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 30  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 30  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 28  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 78

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 27  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 77

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 30  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 46  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 96

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 46  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 96

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 36  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 86

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D+LF W+  I GP D+ Y GG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 28  DDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYHPNI 78

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 64.3 bits (155), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ Y GG F  ++ FP DYP+ PP + F TK++HPN+
Sbjct: 48  DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNI 98

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W   I GP D+ YQGG F   + FP+DYP+  P + F+TKV+HPN+
Sbjct: 31  DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI 81

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+    GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+
Sbjct: 30  DDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNI 80

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 39/54 (72%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +++N+ +W   IFGP  T ++ G FK  ++F  +YP  PPT+RFL+K++HPNVY
Sbjct: 29  SENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKPPTVRFLSKMFHPNVY 82

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HP +
Sbjct: 28  DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPAI 78

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 61.2 bits (147), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Query: 226 VKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEG 285
            ++V  D +  W   I GP  T Y+GG+F   +  P DYPY+PP ++F+TK+WHPN+   
Sbjct: 67  AQIVGGD-IHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQ 125
Query: 286 TA 287
           T 
Sbjct: 126 TG 127

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           DN++EW   I GPP ++Y+GG F   + F  DYP+ PP + F T+++H N+
Sbjct: 30  DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNI 80

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 34/51 (66%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           DN++EW   I GPP ++Y+GG F   + F  +YP+ PP + F T+++H N+
Sbjct: 75  DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI 125

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 58.2 bits (139), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           DNLF+W   I G   T+Y+   +K  ++FP  YPY+ PT++FLT  +HPNV
Sbjct: 57  DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNV 107

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +L  W+V I G P T ++GG +K  M FP +YP  PP  RF   ++HPNVY
Sbjct: 43  DLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVY 93

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           DN+  W   I GP DT Y+ G F+  ++F  +YP  PP ++FL++++HPNVY
Sbjct: 31  DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY 82

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 226 VKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEG 285
           ++ V++ ++   +    GPP T Y+GG F   ++ P++YP+ PP ++F TKV+HPN+   
Sbjct: 24  LEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSV 83
Query: 286 TA 287
           T 
Sbjct: 84  TG 85

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 38  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 88

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 39  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 89

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           +DDNL  ++V I GP  + Y+ G F+  +  P DYP   P +RFLTK++HPN+
Sbjct: 28  HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 80

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 87

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 39  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 89

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           +DDNL  ++V I GP  + Y+ G F+  +  P DYP   P +RFLTK++HPN+
Sbjct: 30  HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 82

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 87

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           +DDNL  ++V I GP  + Y+ G F+  +  P DYP   P +RFLTK++HPN+
Sbjct: 28  HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI 80

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 42  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 92

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 37  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 87

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ 288
           +N+ +  +++V   GP  T Y+GG +K H+  P DYP++ P+I F+ K+ HPNV E +  
Sbjct: 23  LNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGS 82

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 22/62 (35%), Positives = 39/62 (62%)
Query: 226 VKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEG 285
           ++ V++ ++   +    GPP T Y+GG F   ++ P++YP+ PP ++F TKV+HPN+   
Sbjct: 23  LEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSV 82
Query: 286 TA 287
           T 
Sbjct: 83  TG 84

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HP VY
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPQVY 90

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 25/50 (50%), Positives = 30/50 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNV
Sbjct: 40  NLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNV 89

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           ++ N   + V I GP D+ ++GG FK  +  P +YP + P +RF+TK++HPNV
Sbjct: 30  DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 82

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           ++ N   + V I GP D+ ++GG FK  +  P +YP + P +RF+TK++HPNV
Sbjct: 28  DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 80

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 34/53 (64%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           +DDNL  ++V I GP  + Y+ G F+  +  P DYP   P +RFLTK++HP +
Sbjct: 28  HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPAI 80

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           ++ N   + V I GP D+ ++GG FK  +  P +YP + P +RF+TK++HPNV
Sbjct: 31  DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 83

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           ++ N   + V I GP D+ ++GG FK  +  P +YP + P +RF+TK++HPNV
Sbjct: 33  DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 85

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           ++ N   + V I GP D+ ++GG FK  +  P +YP + P +RF+TK++HPNV
Sbjct: 26  DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV 78

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FR   V++ NL  W+  I  P +  Y  G F+  + FP +YP+ PP I F TK++HPN+ 
Sbjct: 24  FRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 82
Query: 284 E 284
           E
Sbjct: 83  E 83

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           N+++L + +V I GP  T Y GG F+  +    D+P SPP   FLTK++HPNV
Sbjct: 38  NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNV 90

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FR   V++ NL  W+  +  P +  Y  G F+  + FP +YP+ PP I F TK++HPN+ 
Sbjct: 22  FRNIQVDEANLLTWQ-GLIVPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80
Query: 284 E 284
           E
Sbjct: 81  E 81

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           +N   + + I GP  T Y+GG +K  +  P  YP  PP +RFLTK++HPN+
Sbjct: 28  ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI 78

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           +N   + + I GP  T Y+GG +K  +  P  YP  PP +RFLTK++HPN+
Sbjct: 28  ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNI 78

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ 288
           +++ EWEV I G  ++++QG  F+  + F  +Y Y+PP ++F+T  +HPNV   T Q
Sbjct: 50  EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQ 106

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287
            L E+ V  +GP  T Y+GG +K  +  P  YP+  P+I F+ K++HPN+ E + 
Sbjct: 49  GLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASG 103

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
           + D + +    I G  +T Y+ G FK  +  P  YP+ PP IRFLT ++HPN+
Sbjct: 29  DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI 81

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEG 285
           +D N+  W  A+  P    Y    F   + FP +YP+ PP I+F TK++HPNV E 
Sbjct: 27  DDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN 81

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 47.8 bits (112), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEG 285
           +D N+  W  A+  P    Y    F   + FP +YP+ PP I+F TK++HPNV E 
Sbjct: 30  DDANVLVWH-ALLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDEN 84

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 35/69 (50%)
Query: 219 MMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVW 278
           M       K+   D + E+ V   GP  T Y+ G +  H++ P DYP+  P+I F  ++ 
Sbjct: 22  MRLCNSTRKVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRIL 81
Query: 279 HPNVYEGTA 287
           HPNV E + 
Sbjct: 82  HPNVDERSG 90

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFL-TKVWHPNVYEGTA 287
           +++ +L +WE  I GP DT Y+   F+  ++ P  YP +PP I F+   + H NV   T 
Sbjct: 42  IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATG 101
Query: 288 Q 288
           +
Sbjct: 102 E 102

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFL-TKVWHPNVYEGTA 287
           +++ +L +WE  I GP DT Y+   F+  ++ P  YP +PP I F+   + H NV   T 
Sbjct: 42  IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG 101
Query: 288 Q 288
           +
Sbjct: 102 E 102

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFL-TKVWHPNVYEGTA 287
           +++ +L +WE  I GP DT Y+   F+  ++ P  YP +PP I F+   + H NV   T 
Sbjct: 42  IDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG 101
Query: 288 Q 288
           +
Sbjct: 102 E 102

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +L +WE  I G   T + GG +   +++P +YP  PP ++F    +HPNVY
Sbjct: 39  DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVY 89

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLT 275
            N+ EW   + GP  T Y+GGY+   + FP ++P+ PP+I  +T
Sbjct: 41  SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMIT 84

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 233 NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +L +WE  I G   T + GG +   +++P +YP  PP ++F    +HPNVY
Sbjct: 37  DLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVY 87

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 244 PPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
           P +  YQGG F+   + P  Y   PP ++ LTK+WHPN+ E
Sbjct: 53  PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE 93

>pdb|4DS2|A Chain A, Ubiquitin Conjugating Enzyme (Putative) From Trypanosoma Cruzi Length = 167

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)
Query: 229 VNDDNLFEWEVAIFGPPDTLYQGG--YFKAHMKFPIDYPYSPPTIRFLTKVWHP 280
           V+ D ++ W + +  P D++Y G    ++  + F  DYP+ PPT+RF+T V+ P
Sbjct: 44  VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSP 97

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 244 PPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
           P +  YQGG F+   + P  Y   PP ++ LTK+WHPN+ E
Sbjct: 53  PDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITE 93

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 222 IRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           + F ++  +D  L  W   IFG P T+++   +   +    +YP SPPT++F TK+
Sbjct: 46  VSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 101

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 222 IRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           + F ++  +D  L  W   IFG P T+++   +   +    +YP SPPT++F TK+
Sbjct: 42  VSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKI 97

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 220 MFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWH 279
           +F+R      +++ L   +V I GP DT Y  G F+  + FP DYP SPP +   T   H
Sbjct: 100 VFVR-----CDEERLDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGH 154
Query: 280 -----PNVY 283
                PN+Y
Sbjct: 155 SVRFNPNLY 163

>pdb|2C2V|C Chain C, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 142

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           D  L  W   I GPP T+Y+   +   ++    YP +PP +RF+TK+
Sbjct: 37  DMTLTRWTGMILGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 83

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           D  L  W   I GPP T Y+   +   ++    YP +PP++RF+TK+
Sbjct: 40  DMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 86

>pdb|2A4D|A Chain A, Structure Of The Human Ubiquitin-Conjugating Enzyme E2 Variant 1 (Uev- 1) Length = 160

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           D  L  W   I GPP T+Y+   +   ++    YP +PP +RF+TK+
Sbjct: 55  DMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 101

>pdb|2HLW|A Chain A, Solution Structure Of The Human Ubiquitin-Conjugating Enzyme Variant Uev1a Length = 170

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           D  L  W   I GPP T+Y+   +   ++    YP +PP +RF+TK+
Sbjct: 65  DMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI 111

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           D  L  W   I GPP T Y+   +   ++    YP +PP++RF+TK+
Sbjct: 34  DMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 80

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           D  L  W   I GPP T Y+   +   ++    YP +PP++RF+TK+
Sbjct: 45  DMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 91

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV 277
           D  L  W   I GPP T Y+   +   ++    YP +PP++RF+TK+
Sbjct: 35  DMTLTRWTGMIIGPPRTNYENRIYSLKVECGPKYPEAPPSVRFVTKI 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	289
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	1e-33
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	6e-22
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-33
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-22
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	7e-33
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	1e-21
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-32
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	2e-21
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	3e-29
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-16
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	8e-29
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	5e-16
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	3e-28
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-16
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	4e-28
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	8e-17
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	5e-28
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	2e-16
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	7e-28
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-15
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-27
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	3e-16
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	1e-27
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	3e-11
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	2e-27
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	2e-13
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	3e-27
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	2e-16
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	4e-27
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	3e-16
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	4e-27
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	3e-15
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	5e-27
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	4e-15
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	7e-27
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	3e-17
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	1e-26
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	9e-14
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	1e-26
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-15
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-26
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	3e-14
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	4e-26
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	1e-13
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	4e-26
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	2e-10
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	4e-26
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	6e-14
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	5e-26
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	1e-11
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	5e-26
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	6e-10
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	6e-26
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	2e-13
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	6e-26
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	1e-10
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	7e-26
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	1e-10
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	8e-26
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	3e-10
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	8e-26
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	3e-13
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	9e-26
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	3e-10
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	1e-25
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	8e-13
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	1e-25
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	5e-13
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	1e-25
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	4e-13
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	1e-25
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	1e-12
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	2e-25
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	3e-09
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-25
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	4e-13
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	2e-25
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	1e-09
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	3e-25
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	4e-10
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	4e-25
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	1e-13
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	5e-25
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	8e-10
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	5e-25
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	4e-10
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	2e-23
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	6e-12
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	2e-23
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	1e-08
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	3e-23
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	3e-09
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	8e-23
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	7e-15
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	6e-20
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	4e-07
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	1e-19
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	2e-09
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	2e-19
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	1e-10

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  120 bits (302), Expect = 1e-33
 Identities = 45/61 (73%), Positives = 54/61 (88%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA +KFPIDYPYSPP  RFLTK+WHPN+Y
Sbjct: 27  FRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIY 86

Query: 284 E 284
           E
Sbjct: 87  E 87

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score = 89.4 bits (222), Expect = 6e-22
 Identities = 36/59 (61%), Positives = 48/59 (81%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
           + S+ +AL +E K LQEEPVEGFRV LV++ +L+ WEVAIFGPP+T Y+GGYFKA ++
Sbjct: 4  GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLK 62

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  119 bits (300), Expect = 2e-33
 Identities = 35/61 (57%), Positives = 48/61 (78%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           F   L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP  PP ++F+T++WHPNV 
Sbjct: 37  FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 96

Query: 284 E 284
           +
Sbjct: 97  K 97

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score = 90.2 bits (224), Expect = 2e-22
 Identities = 26/59 (44%), Positives = 35/59 (59%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
                  L  +   L + PVEGF   L++D++L+ WEV I GPPDTLY+GG FKA + 
Sbjct: 14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLT 72

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  117 bits (295), Expect = 7e-33
 Identities = 28/61 (45%), Positives = 40/61 (65%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
                +N++N FEWE  I GP DT ++ G F A + FP+DYP SPP +RF  +++HPN+Y
Sbjct: 23  IVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIY 82

Query: 284 E 284
            
Sbjct: 83  P 83

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score = 87.8 bits (218), Expect = 1e-21
 Identities = 25/57 (43%), Positives = 33/57 (57%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
           +AL+ L  EYK L   P EG     +N++N FEWE  I GP DT ++ G F AI+ 
Sbjct: 2  GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILS 58

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  117 bits (295), Expect = 1e-32
 Identities = 26/61 (42%), Positives = 36/61 (59%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
                 +++N+F W+  I GPPDT Y  G F A ++FP DYP SPP + F   + HPN+Y
Sbjct: 24  IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 83

Query: 284 E 284
            
Sbjct: 84  P 84

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score = 87.8 bits (218), Expect = 2e-21
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          + +A + L  E + L ++   G      +++N+F W+  I GPPDT Y  G F A +E
Sbjct: 2  SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLE 59

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  108 bits (271), Expect = 3e-29
 Identities = 20/53 (37%), Positives = 35/53 (66%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            +++ EWEV I G  ++++QG  F+  + F  +Y Y+PP ++F+T  +HPNV 
Sbjct: 49  SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVD 101

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 74.7 bits (184), Expect = 1e-16
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
             A   L  ++  L+E   +G   K V  +++ EWEV I G  ++++QG  F+  I 
Sbjct: 21 HGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIH 77

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  106 bits (268), Expect = 8e-29
 Identities = 26/55 (47%), Positives = 37/55 (67%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
           + DNLF+W   + GP DT+Y+   +K  ++FP DYPY PP ++F T  WHPNV +
Sbjct: 34  DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQ 88

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score = 72.7 bits (179), Expect = 5e-16
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
             S  + L  E ++L      G        DNLF+W   + GP DT+Y+   +K  +E
Sbjct: 6  ERHSVSKRLQQELRTLLMSGDPGITAFPD-GDNLFKWVATLDGPKDTVYESLKYKLTLE 63

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  105 bits (263), Expect = 3e-28
 Identities = 26/54 (48%), Positives = 38/54 (70%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
           D+N+  W   IFGP DT + GG FK  ++F  DYP  PPT+RF+++++HPN+Y 
Sbjct: 30  DNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYA 83

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score = 74.2 bits (183), Expect = 1e-16
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          ++ A + L  ++K LQ++P  G       D+N+  W   IFGP DT + GG FK  ++
Sbjct: 2  STPARKRLMRDFKRLQQDPPAGISGAPQ-DNNIMLWNAVIFGPDDTPWDGGTFKLSLQ 58

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  105 bits (264), Expect = 4e-28
 Identities = 23/53 (43%), Positives = 35/53 (66%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            DN+  W   I GP DT Y+ G F+  ++F  +YP  PP ++FL++++HPNVY
Sbjct: 30  PDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY 82

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score = 75.1 bits (185), Expect = 8e-17
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          ++ A R L  ++K ++E+   G     +  DN+  W   I GP DT Y+ G F+ ++E
Sbjct: 2  STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLLE 58

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  105 bits (263), Expect = 5e-28
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
              +L  W+V I G P T ++GG +K  M FP +YP  PP  RF   ++HPNVY
Sbjct: 40  GGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVY 93

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKAI 61
          +S     L  E K  + +   GF  K         +L  W+V I G P T ++GG +K  
Sbjct: 8  SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67

Query: 62 IE 63
          + 
Sbjct: 68 MA 69

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  105 bits (263), Expect = 7e-28
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
            DNLF+W   I G   T+Y+   +K  ++FP  YPY+ PT++FLT  +HPNV  
Sbjct: 56  SDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 109

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score = 71.2 bits (175), Expect = 3e-15
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
                + L  E  +L     +G        DNLF+W   I G   T+Y+   +K  +E
Sbjct: 27 ARGPVGKRLQQELMTLMMSGDKGISAFPE-SDNLFKWVGTIHGAAGTVYEDLRYKLSLE 84

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  103 bits (260), Expect = 1e-27
 Identities = 26/54 (48%), Positives = 31/54 (57%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
              NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY
Sbjct: 37  GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVY 90

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score = 73.5 bits (181), Expect = 3e-16
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDD----NLFEWEVAIFGPPDTLYQGGYFKAI 61
          +  AL  L+ E K+ +++   GF      +     NL  WE AI G   T ++GG FK  
Sbjct: 5  SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64

Query: 62 IE 63
          + 
Sbjct: 65 ML 66

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  103 bits (259), Expect = 1e-27
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 221 FIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHP 280
            + F ++  +D  L  W   IFG P T+++   +   +    +YP SPPT++F TK+   
Sbjct: 41  GVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMS 100

Query: 281 NVY 283
            V 
Sbjct: 101 CVD 103

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 1  MAQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGY 57
             VP       L  E +  Q     EG    L + D   L  W   IFG P T+++   
Sbjct: 17 QGIVP---RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRI 73

Query: 58 FKAIIE 63
          +   I 
Sbjct: 74 YSLTIF 79

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  103 bits (259), Expect = 2e-27
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 222 IRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFL-TKVWHP 280
           I   +  +++ +L +WE  I GP DT Y+   F+  ++ P  YP +PP I F+   + H 
Sbjct: 35  IIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHC 94

Query: 281 NVYEGT 286
           NV   T
Sbjct: 95  NVKSAT 100

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 65.9 bits (161), Expect = 2e-13
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 6  TSSALRALSMEYKSLQEE---------PVEGFRVKL--VNDDNLFEWEVAIFGPPDTLYQ 54
            + +  +  EYK + +          P  G    L  +++ +L +WE  I GP DT Y+
Sbjct: 4  ADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYE 63

Query: 55 GGYFKAIIE 63
             F+ +IE
Sbjct: 64 NHQFRILIE 72

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  102 bits (255), Expect = 3e-27
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK-VWHPNVYE 284
           V+  N+  W V   G  +T+Y    +K  + FP +YP  PP + FL K   H +VY 
Sbjct: 44  VHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYS 100

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 1/63 (1%)

Query: 1  MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
            +    +A   +  E  +  + P     +  V+  N+  W V   G  +T+Y    +K 
Sbjct: 13 KTKYNLGNANYRIQKELNNFLKNPPINCTID-VHPSNIRIWIVQYVGLENTIYANEVYKI 71

Query: 61 IIE 63
           I 
Sbjct: 72 KII 74

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  101 bits (253), Expect = 4e-27
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK-VWHPNVYE 284
           V+ +N+  W V   G  +T+Y    +K  + FP DYP  PP + FL K   H +VY 
Sbjct: 30  VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYS 86

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
           +A   +  E  +    P     + +   +N+  W V   G  +T+Y    +K  I 
Sbjct: 5  GNANYRIQKELHNFLNNPPINCTLDVH-PNNIRIWIVKYVGLENTIYANEVYKLKII 60

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  101 bits (255), Expect = 4e-27
 Identities = 22/63 (34%), Positives = 39/63 (61%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             ++ V++ ++   +    GPP T Y+GG F   ++ P++YP+ PP ++F TKV+HPN+ 
Sbjct: 21  ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80

Query: 284 EGT 286
             T
Sbjct: 81  SVT 83

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 14/56 (25%), Positives = 30/56 (53%)

Query: 8  SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          S  + +  E ++++++P     ++ V++ ++   +    GPP T Y+GG F   IE
Sbjct: 1  SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIE 56

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  101 bits (255), Expect = 5e-27
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 4/64 (6%)

Query: 224 FRVKLVNDD----NLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWH 279
           F  K V       +L +WE  I G   T + GG +   +++P +YP  PP ++F    +H
Sbjct: 24  FYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGFYH 83

Query: 280 PNVY 283
           PNVY
Sbjct: 84  PNVY 87

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDD----NLFEWEVAIFGPPDTLYQGGYFKAI 61
          +S  L+ L  E K  +++   GF  K V       +L +WE  I G   T + GG +   
Sbjct: 2  SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPIT 61

Query: 62 IE 63
          +E
Sbjct: 62 VE 63

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  101 bits (253), Expect = 7e-27
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK--VWHPNVY 283
             +++ +W V + G P TLY+G  F+   KF   YP+  P + F  +    HP+VY
Sbjct: 49  VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVY 104

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score = 75.4 bits (186), Expect = 3e-17
 Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 1  MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVN-DDNLFEWEVAIFGPPDTLYQGGYFK 59
          + +   +S  + L  E  +LQ +P  G  +   +  +++ +W V + G P TLY+G  F+
Sbjct: 15 VPRGSMASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQ 74

Query: 60 AIIE 63
           + +
Sbjct: 75 LLFK 78

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  101 bits (253), Expect = 1e-26
 Identities = 24/54 (44%), Positives = 34/54 (62%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           N+++L + +V I GP  T Y GG F+  +    D+P SPP   FLTK++HPNV 
Sbjct: 38  NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVG 91

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score = 66.5 bits (163), Expect = 9e-14
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
              +R +  E  +L  +P +G +V   N+++L + +V I GP  T Y GG F+  + 
Sbjct: 11 PPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKLL 67

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  102 bits (256), Expect = 1e-26
 Identities = 22/63 (34%), Positives = 39/63 (61%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             ++ V++ ++   +    GPP T Y+GG F   ++ P++YP+ PP ++F TKV+HPN+ 
Sbjct: 22  ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 81

Query: 284 EGT 286
             T
Sbjct: 82  SVT 84

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score = 72.5 bits (178), Expect = 2e-15
 Identities = 15/57 (26%), Positives = 31/57 (54%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          SS  + +  E ++++++P     ++ V++ ++   +    GPP T Y+GG F   IE
Sbjct: 1  SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIE 57

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  100 bits (250), Expect = 3e-26
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FR   V++ NL  W+  I  P +  Y  G F+  + FP +YP+ PP I F TK++HPN+ 
Sbjct: 22  FRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 80

Query: 284 E 284
           E
Sbjct: 81  E 81

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 8  SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          +A R L  E + +++  ++ FR   V++ NL  W+  I  P +  Y  G F+  I 
Sbjct: 2  AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEIN 56

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 99.6 bits (249), Expect = 4e-26
 Identities = 25/53 (47%), Positives = 36/53 (67%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            D+LF W+  I GPP++ YQGG F   + FP DYP+ PP + F T+++HPN+ 
Sbjct: 30  GDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 82

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          +  AL+ +  E + L  +P        V  D+LF W+  I GPP++ YQGG F   I 
Sbjct: 2  SHMALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTIH 58

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 99.7 bits (249), Expect = 4e-26
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
            D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+   T
Sbjct: 36  VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 92

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 1  MAQVPTSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
          MA    + A++ +  E+K +    E      +V LV D+N  E    I GPPDT Y+GG 
Sbjct: 3  MAM--ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGR 59

Query: 58 FKAIIE 63
          ++  I+
Sbjct: 60 YQLEIK 65

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  100 bits (250), Expect = 4e-26
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            +V   + + L  +++    P +  YQGG F+   + P  Y   PP ++ LTK+WHPN+ 
Sbjct: 34  CKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNIT 92

Query: 284 E 284
           E
Sbjct: 93  E 93

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score = 67.4 bits (165), Expect = 6e-14
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 1  MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
           +    S   + L  E   L+       +V   + + L  +++    P +  YQGG F+ 
Sbjct: 7  DSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQL-TVTPDEGYYQGGKFQF 65

Query: 61 IIE 63
            E
Sbjct: 66 ETE 68

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 99.2 bits (248), Expect = 5e-26
 Identities = 22/54 (40%), Positives = 32/54 (59%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             +N   + + I GP  T Y+GG +K  +  P  YP  PP +RFLTK++HPN+ 
Sbjct: 26  VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNID 79

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          ++ E ++L  EP  G     V  +N   + + I GP  T Y+GG +K  + 
Sbjct: 6  ITKETQNLANEPPPGIMAVPV-PENYRHFNILINGPDGTPYEGGTYKLELF 55

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 99.8 bits (249), Expect = 5e-26
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 228 LVNDDNLFEWEVAIFGPPDTLY--QGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
            V+ D ++ W + +  P D++Y   G  ++  + F  DYP+ PPT+RF+T V+ P V  
Sbjct: 43  SVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTG 101

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 11/71 (15%), Positives = 27/71 (38%), Gaps = 13/71 (18%)

Query: 6  TSSALRALSMEYKSLQEEPV-----------EGFRVKLVNDDNLFEWEVAIFGPPDTLY- 53
           + + + +  + K L EE                 +  V+ D ++ W + +  P D++Y 
Sbjct: 6  KNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYG 65

Query: 54 -QGGYFKAIIE 63
            G  ++  + 
Sbjct: 66 GAGNTYQLSVL 76

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 99.7 bits (249), Expect = 6e-26
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+ 
Sbjct: 45  GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 97

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score = 66.2 bits (162), Expect = 2e-13
 Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
            S AL+ +  E   L  +P        V  D++F W+  I GP D+ YQGG F   I 
Sbjct: 16 RGSMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTIH 73

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 99.8 bits (249), Expect = 6e-26
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            D  L  W   I GPP T+Y+   +   ++    YP +PP +RF+TK+    V 
Sbjct: 64  EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN 117

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score = 58.2 bits (141), Expect = 1e-10
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1  MAQVPTSSALRALSMEYKSLQEEPVEG---FRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
            +         L  E +  Q+   +G   + ++   D  L  W   I GPP T+Y+   
Sbjct: 28 HCKGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRI 87

Query: 58 FKAIIE 63
          +   IE
Sbjct: 88 YSLKIE 93

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 98.9 bits (247), Expect = 7e-26
 Identities = 23/57 (40%), Positives = 37/57 (64%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
           N+ +  +++V   GP  T Y+GG +K H+  P DYP++ P+I F+ K+ HPNV E +
Sbjct: 24  NNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEAS 80

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score = 57.7 bits (140), Expect = 1e-10
 Identities = 10/48 (20%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 16 EYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          +     +  + G+ ++L  + +  +++V   GP  T Y+GG +K  + 
Sbjct: 7  KQCDFTKLIMAGYDLELN-NGSTQDFDVMFHGPNGTAYEGGIWKVHVT 53

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 98.5 bits (246), Expect = 8e-26
 Identities = 15/54 (27%), Positives = 28/54 (51%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +D  + +W   I GPP + ++   +   +    +YP SPP + F++K+  P V 
Sbjct: 35  DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVN 88

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score = 56.1 bits (136), Expect = 3e-10
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 1  MAQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGY 57
          M++VP       L  E +  +     E     L + D   + +W   I GPP + ++   
Sbjct: 2  MSKVP---RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRI 58

Query: 58 FKAIIE 63
          +   I+
Sbjct: 59 YSLSID 64

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 99.3 bits (248), Expect = 8e-26
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            D++F W+  I GP D+ Y GG F  ++ FP DYP+ PP + F TK++HPN+ 
Sbjct: 47  GDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNIN 99

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score = 65.4 bits (160), Expect = 3e-13
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 1  MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
             +    AL+ ++ E   L ++P        V  D++F W+  I GP D+ Y GG F  
Sbjct: 14 RENLYFQGALKRINKELNDLSKDPPTNCSAGPV-GDDMFHWQATIMGPEDSPYSGGVFFL 72

Query: 61 IIE 63
           I 
Sbjct: 73 NIH 75

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 99.0 bits (247), Expect = 9e-26
 Identities = 18/54 (33%), Positives = 27/54 (50%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            D  L  W   I GPP T+Y+   +   ++    YP +PP +RF+TK+    V 
Sbjct: 54  EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVN 107

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score = 57.0 bits (138), Expect = 3e-10
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 2  AQVPTSSALRALSMEYKSLQEEPVEG---FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
            V      R L  E +  Q+   +G   + ++   D  L  W   I GPP T+Y+   +
Sbjct: 20 TGVKVPRNFR-LLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 78

Query: 59 KAIIE 63
             IE
Sbjct: 79 SLKIE 83

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 98.5 bits (246), Expect = 1e-25
 Identities = 24/55 (43%), Positives = 35/55 (63%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
           +DDNL  ++V I GP  + Y+ G F+  +  P DYP   P +RFLTK++HPN+  
Sbjct: 30  HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 84

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score = 63.8 bits (156), Expect = 8e-13
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
            +S  + +  E + L  +PV G   +   DDNL  ++V I GP  + Y+ G F+  + 
Sbjct: 2  SAASLPKRIIKETEKLVSDPVPGITAEPH-DDNLRYFQVTIEGPEQSPYEDGIFELELY 59

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 98.5 bits (246), Expect = 1e-25
 Identities = 22/54 (40%), Positives = 35/54 (64%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           ++ N   + V I GP D+ ++GG FK  +  P +YP + P +RF+TK++HPNV 
Sbjct: 30  DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVD 83

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          ++   R +  E + L  EPV G + +   + N   + V I GP D+ ++GG FK  + 
Sbjct: 3  SAGLPRRIIKETQRLLAEPVPGIKAEPD-ESNARYFHVVIAGPQDSPFEGGTFKLELF 59

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  100 bits (250), Expect = 1e-25
 Identities = 28/54 (51%), Positives = 36/54 (66%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            D N FEW   I GP  T Y+GG+F   +  P DYPY+PP I+F+TK+WHPN+ 
Sbjct: 48  KDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNIS 101

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score = 66.3 bits (162), Expect = 4e-13
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
           S  L  L  E K ++ E V+     +  D N FEW   I GP  T Y+GG+F   I 
Sbjct: 21 GSKELLRLQKELKDIENENVQEIDAHIK-DSNFFEWVGFIKGPEGTPYEGGHFTLAIT 77

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 98.6 bits (246), Expect = 1e-25
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
           + D + +    I G  +T Y+ G FK  +  P  YP+ PP IRFLT ++HPN+  
Sbjct: 29  DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS 83

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          +      L  E   L  EP  G        D + +    I G  +T Y+ G FK  + 
Sbjct: 2  SMQRASRLKRELHMLATEPPPGITCWQD-KDQMDDLRAQILGGANTPYEKGVFKLEVI 58

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 99.5 bits (248), Expect = 2e-25
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
              ++  W   I GP  T Y+GG+F   +  P DYPY+PP ++F+TK+WHPN+ 
Sbjct: 70  VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score = 54.8 bits (132), Expect = 3e-09
 Identities = 12/53 (22%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          +       +       G   ++V   ++  W   I GP  T Y+GG+F   I 
Sbjct: 48 QRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIV 99

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 99.1 bits (247), Expect = 2e-25
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
             DN++EW   I GPP ++Y+GG F   + F  +YP+ PP + F T+++H N+  
Sbjct: 73  KGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINS 127

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score = 65.5 bits (160), Expect = 4e-13
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 6   TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
            S++ + +  E   +  +P           DN++EW   I GPP ++Y+GG F   I 
Sbjct: 46  LSTSAKRIQKELADITLDPPPNCSAGPK-GDNIYEWRSTILGPPGSVYEGGVFFLDIT 102

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 99.0 bits (247), Expect = 2e-25
 Identities = 27/57 (47%), Positives = 38/57 (66%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
            D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+   T
Sbjct: 33  VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 89

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 1  MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
          MA       ++    E    +E      +V LV D+N  E    I GPPDT Y+GG ++ 
Sbjct: 2  MAN-IAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQL 59

Query: 61 IIE 63
           I+
Sbjct: 60 EIK 62

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 97.8 bits (244), Expect = 3e-25
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
            D + E+ V   GP  T Y+ G +  H++ P DYP+  P+I F  ++ HPNV E +
Sbjct: 34  SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS 89

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 1  MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA 60
          M+      + R   M+Y  L     + +       D + E+ V   GP  T Y+ G +  
Sbjct: 5  MSGAGNLRSNRRREMDYMRLCNSTRKVY-----PSDTVAEFWVEFKGPEGTPYEDGTWML 59

Query: 61 IIE 63
           ++
Sbjct: 60 HVQ 62

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 97.0 bits (242), Expect = 4e-25
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            R    +D N+  W   +  P    Y    F   + FP +YP+ PP I+F TK++HPNV 
Sbjct: 24  LRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 82

Query: 284 E 284
           E
Sbjct: 83  E 83

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score = 66.1 bits (162), Expect = 1e-13
 Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          +  A   +  E + LQ++P    R    +D N+  W   +  P    Y    F   I 
Sbjct: 2  SHMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRIS 58

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 99.6 bits (248), Expect = 5e-25
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
           + D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+   T
Sbjct: 84  LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 141

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score = 57.2 bits (138), Expect = 8e-10
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 1   MAQVPTSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
                 + A++ +  E+K +    E      +V LV D+N  E    I GPPDT Y+GG 
Sbjct: 50  SEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGR 108

Query: 58  FKAIIE 63
           ++  I+
Sbjct: 109 YQLEIK 114

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 97.5 bits (243), Expect = 5e-25
 Identities = 21/56 (37%), Positives = 33/56 (58%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
              L E+ V  +GP  T Y+GG +K  +  P  YP+  P+I F+ K++HPN+ E +
Sbjct: 47  LGGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEAS 102

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          S   R +  +   L E   E           L E+ V  +GP  T Y+GG +K  ++
Sbjct: 24 SPGKRRMDTDVIKLIESKHEV-----TILGGLNEFVVKFYGPQGTPYEGGVWKVRVD 75

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 97.7 bits (243), Expect = 2e-23
 Identities = 24/53 (45%), Positives = 35/53 (66%)

Query: 231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            D++F W+  I GP D+ YQGG F   + FP DYP+ PP + F T+++HPN+ 
Sbjct: 29  GDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN 81

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score = 64.6 bits (157), Expect = 6e-12
 Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          + AL+ +  E   L  +P        V  D++F W+  I GP D+ YQGG F   I 
Sbjct: 2  AMALKRIHKELNDLARDPPAQCSAGPV-GDDMFHWQATIMGPNDSPYQGGVFFLTIH 57

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 92.7 bits (231), Expect = 2e-23
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             +   + D+L  +++ I  P +  Y+ G F    K    YP+ PP ++  T V+HPN+ 
Sbjct: 24  CDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 82

Query: 284 E 284
            
Sbjct: 83  L 83

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
           S+A   +  +   L         +   + D+L  +++ I  P +  Y+ G F    +
Sbjct: 4  ASAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFK 58

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 92.8 bits (231), Expect = 3e-23
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             +   + D+L  +++ I  P +  Y+ G F    K    YP+ PP ++  T V+HPN+ 
Sbjct: 44  CDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 102

Query: 284 E 284
            
Sbjct: 103 L 103

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 10/58 (17%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
           S+A   +  +   L         +   + D+L  +++ I  P +  Y+ G F    +
Sbjct: 24 ASAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFK 78

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 92.1 bits (229), Expect = 8e-23
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
              N+ EW   + GP  T Y+GGY+   + FP ++P+ PP+I  +T       
Sbjct: 39  LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC 91

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score = 70.6 bits (173), Expect = 7e-15
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
            ++A + L  +Y  ++++PV     + +   N+ EW   + GP  T Y+GGY+   + 
Sbjct: 11 APTTATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLI 68

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 84.4 bits (209), Expect = 6e-20
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 230 NDDNLFEWEVA----IFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
           + D+    +      I  P +  Y  G    ++ F   YP  PP +  L K++HPN+  
Sbjct: 54  SPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDL 112

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score = 48.2 bits (115), Expect = 4e-07
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 5/62 (8%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVA----IFGPPDTLYQGGYFKAI 61
           S+A   L  +  SL   P     V     D+    +      I  P +  Y  G     
Sbjct: 27 LSAARIRLKRDLDSLDLPPTVTLNVITS-PDSADRSQSPKLEVIVRPDEGYYNYGSINFN 85

Query: 62 IE 63
          ++
Sbjct: 86 LD 87

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 83.1 bits (205), Expect = 1e-19
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 13/70 (18%)

Query: 229 VNDDNLFEWEVAIFG-PPDTLYQGG-----------YFKAHMKFPIDYPYSPPTIRFLTK 276
           + +D+L++W V +    PD+                Y   +  F  ++P+ PP +R +  
Sbjct: 54  LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP 113

Query: 277 VWHPN-VYEG 285
           V     V  G
Sbjct: 114 VLSGGYVLGG 123

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 12/77 (15%), Positives = 26/77 (33%), Gaps = 3/77 (3%)

Query: 1  MAQVPTSSALRALSMEYKSLQEEPVEGFRVKLV--NDDNLFEWEVAIFG-PPDTLYQGGY 57
           A   +  A   L  E + +         +  V   +D+L++W V +    PD+      
Sbjct: 20 GAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDL 79

Query: 58 FKAIIEGELPHWDVNVQ 74
               +  + +  +N  
Sbjct: 80 QILKEKEGIEYILLNFS 96

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 85.9 bits (212), Expect = 2e-19
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWH-----PNVY 283
            +++ L   +V I GP DT Y  G F+  + FP DYP SPP +   T   H     PN+Y
Sbjct: 104 CDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLY 163

Query: 284 E 284
            
Sbjct: 164 N 164

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 60.5 bits (146), Expect = 1e-10
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 1   MAQVPTSSALRALSMEYKSLQEEPVEGFR---VKLVNDDNLFEWEVAIFGPPDTLYQGGY 57
                +++  R L+ E  +L                +++ L   +V I GP DT Y  G 
Sbjct: 69  ANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGC 128

Query: 58  FKAIIE 63
           F+  + 
Sbjct: 129 FEFDVY 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	289
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	99.91
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	99.91
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	99.9
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	99.9
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	99.9
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	99.9
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	99.9
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	99.9
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	99.9
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	99.9
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	99.9
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	99.9
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	99.89
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	99.89
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	99.89
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	99.89
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	99.89
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	99.89
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	99.89
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.89
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	99.89
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	99.89
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	99.89
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	99.89
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	99.89
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	99.89
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	99.89
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	99.89
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	99.89
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	99.89
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	99.89
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	99.89
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	99.89
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	99.89
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	99.89
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	99.89
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	99.89
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	99.89
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	99.89
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	99.89
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	99.88
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	99.88
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	99.88
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	99.88
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	99.88
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	99.88
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	99.88
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	99.88
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	99.88
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	99.88
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	99.88
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	99.88
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	99.88
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	99.88
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	99.88
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	99.88
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.88
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.87
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	99.87
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	99.87
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	99.87
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	99.87
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	99.87
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	99.87
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	99.87
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	99.87
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	99.87
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	99.86
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	99.86
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	99.86
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.86
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	99.86
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	99.86
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	99.86
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	99.85
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	99.85
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	99.85
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.85
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	99.85
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	99.85
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	99.84
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	99.84
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	99.84
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	99.84
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	99.84
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	99.83
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	99.83
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.83
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	99.83
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	99.83
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.83
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.82
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.82
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	99.82
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	99.81
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.81
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	99.81
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	99.81
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.8
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.8
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	99.79
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.77
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.65
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.49
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.06
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	98.89
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	98.8
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	98.5
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	97.89
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	96.32
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	90.6
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	89.38
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	88.36
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	83.63
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	81.73

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=99.91  E-value=2.7e-24  Score=175.11  Aligned_cols=127  Identities=22%  Similarity=0.351  Sum_probs=106.8

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      |++.|.+||+||+++|++++++|+.+.+.+++|+++|++.|.||++|+|+||.|++.|  +++||++||+++|.++++||
T Consensus         1 M~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   80 (165)
T 2ucz_A            1 MSKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHP   80 (165)
T ss_dssp             -CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccC
Confidence            4568999999999999999999999998777899999999999999999999986655  89999999999999999999


Q ss_pred             ceeccceeeCccc-------------cCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           83 TFEASSFISAPLY-------------TESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        83 ~~e~~~~~~~~~~-------------~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      |+..+|.+|++++             .+.|.+++         +++|.. + ++++|.++     ++++.|.+.++++
T Consensus        81 Nv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v~~~  158 (165)
T 2ucz_A           81 NIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLS  158 (165)
T ss_dssp             TBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999998             57898874         333332 2 34444432     6788888888874

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=99.91  E-value=6.4e-24  Score=171.30  Aligned_cols=129  Identities=23%  Similarity=0.347  Sum_probs=108.1

Q ss_pred             CCCCC-ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceec
Q psy621            1 MAQVP-TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQI   77 (289)
Q Consensus         1 m~~~~-~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~   77 (289)
                      ||+++ ++.+.+||+||+++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.+
T Consensus         1 m~~~~~~~~~~~RL~kEl~~l~~~~~~~i~~~p-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   79 (156)
T 2e2c_A            1 MTTSKERHSVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTT   79 (156)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHHCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             CCccccchHHHHHHHHHHHHHHhCCCCCEEEEE-CCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeC
Confidence            77644 667999999999999999999999997 66799999999999999999999986655  899999999999999


Q ss_pred             cccccceeccceeeCccccCccchHH---------HHHhhh-c-ccccc-----cCCCchhhHHHHhHHh
Q psy621           78 ENLTKTFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLN-----VTIDTREGFLKTLNDL  131 (289)
Q Consensus        78 ~~~~~~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n-----~~~~~~~~F~~~l~~~  131 (289)
                      +++|||+..+|.+|++++.+.|.+++         +++|.. + ++++|     .. .+.+.|.+.++++
T Consensus        80 ~i~HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~  148 (156)
T 2e2c_A           80 PCWHPNVDQSGNICLDILKENWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEK  148 (156)
T ss_dssp             CCCBTTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHH
T ss_pred             CcccCCCccCceEECccccccCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHH
Confidence            99999999999999999999998874         333332 1 23333     23 6788888888874

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=99.90  E-value=9.3e-24  Score=169.42  Aligned_cols=125  Identities=22%  Similarity=0.389  Sum_probs=106.0

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      ++.|.+||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++|||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   80 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGP-VGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPN   80 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEE-SSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEE-cCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccce
Confidence            678999999999999999999999997 56799999999999999999999986665  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      +..+|.+|++++.+.|.+++         +.+|.. + ++++|.+     .++.+.|.+.++++
T Consensus        81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~  144 (151)
T 4gpr_A           81 INKNGVICLDILKDQWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREW  144 (151)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             ECCCCEEEcccccCCCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence            99999999999999998884         333332 1 3344432     26778888888874

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=99.90  E-value=1e-23  Score=171.55  Aligned_cols=126  Identities=31%  Similarity=0.488  Sum_probs=105.6

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      +++|.|||+|||++|++++++|+.+.+.+++|+++|++.|.||++|+|+||.|++.|  +++||++||+++|.++++|||
T Consensus         1 a~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   80 (164)
T 3h8k_A            1 AGTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPN   80 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCC
Confidence            357899999999999999999999998777799999999999999999999986655  899999999999999999999


Q ss_pred             eeccceeeCcccc-------------CccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           84 FEASSFISAPLYT-------------ESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        84 ~e~~~~~~~~~~~-------------~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      +..+|.+|++++.             +.|.+++         +.+|.. + ++++|..+     ++.+.|.+.++++
T Consensus        81 V~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~  157 (164)
T 3h8k_A           81 IYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQI  157 (164)
T ss_dssp             BCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999986             7898884         334432 1 33444332     5777788887774

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=99.90  E-value=7.2e-24  Score=172.79  Aligned_cols=128  Identities=23%  Similarity=0.407  Sum_probs=106.1

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      |++.+.+||+|||++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.|  +.+||++||+|+|.++++||
T Consensus         1 Ms~~a~~RL~kEl~~l~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HP   79 (169)
T 1ayz_A            1 MSTPARRRLMRDFKRMKEDAPPGVSASP-LPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHP   79 (169)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEe-cCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccC
Confidence            4558899999999999999999999997 57799999999999999999999986655  89999999999999999999


Q ss_pred             ceeccceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHhhc
Q psy621           83 TFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDLWL  133 (289)
Q Consensus        83 ~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~~~  133 (289)
                      |+..+|.+|++++.+.|.+++         +++|.. + ++++|..     .++++.|.+.++++-.
T Consensus        80 NI~~~G~ICl~iL~~~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~  146 (169)
T 1ayz_A           80 NVYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVE  146 (169)
T ss_dssp             TBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCCCCeEeehhhccCCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999998875         333332 1 3344433     2577788888887443

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=99.90  E-value=9.1e-24  Score=170.68  Aligned_cols=128  Identities=20%  Similarity=0.319  Sum_probs=108.0

Q ss_pred             CCCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccc
Q psy621            3 QVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENL   80 (289)
Q Consensus         3 ~~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~   80 (289)
                      ..++..+.+||+|||++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++
T Consensus         8 ~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   86 (158)
T 1zdn_A            8 ENLPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF   86 (158)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             cccCHHHHHHHHHHHHHHHhCCCCCEEEEE-CCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCcc
Confidence            467888999999999999999999999996 77899999999999999999999986665  899999999999999999


Q ss_pred             ccceeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           81 TKTFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        81 ~~~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      |||+..+|.+|++++.+.|.+++         +.+|.. + ++++|.++     ++++.|.+.++++
T Consensus        87 HPnv~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~  153 (158)
T 1zdn_A           87 HPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLL  153 (158)
T ss_dssp             CTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cCCCCCCCEEehhhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            99999999999999989998874         333332 2 34444432     5777788887773

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=99.90  E-value=1.7e-23  Score=170.04  Aligned_cols=127  Identities=24%  Similarity=0.386  Sum_probs=105.9

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      ...+.+.+||+||+++|++++++|+.+.+ .++|+++|.+.|.||++|+|+||.|.+.|  +++||++||+|+|.++++|
T Consensus        15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H   93 (165)
T 2c4o_A           15 PRGSMALKRIHKELNDLARDPPAQCSAGP-VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   93 (165)
T ss_dssp             -CCHHHHHHHHHHHHHHHSSCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cCCcHHHHHHHHHHHHHHhCCCCCEEEEE-cCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence            45667999999999999999999999997 66799999999999999999999886655  8999999999999999999


Q ss_pred             cceeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           82 KTFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      ||+..+|.+|++++.+.|.+++         +++|.. + ++++|.++     ++++.|.+.++++
T Consensus        94 PnV~~~G~ICl~iL~~~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~  159 (165)
T 2c4o_A           94 PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREW  159 (165)
T ss_dssp             TTBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CcCCCCCeEeehhhcCCCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999998874         344432 2 33444332     5777788887774

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=99.90  E-value=1.4e-23  Score=168.61  Aligned_cols=126  Identities=23%  Similarity=0.430  Sum_probs=105.2

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      |++.+.+||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++||
T Consensus         1 Ms~~a~~RL~~E~~~l~~~~~~~i~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   79 (152)
T 2aak_A            1 MSTPARKRLMRDFKRLQQDPPAGISGAP-QDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHP   79 (152)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEe-CCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccC
Confidence            4568999999999999999999999986 57799999999999999999999986655  89999999999999999999


Q ss_pred             ceeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           83 TFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        83 ~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      |+..+|.+|++++.+.|.+++         +++|.. + ++++|..+     ++++.|.+.++++
T Consensus        80 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~  144 (152)
T 2aak_A           80 NIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDV  144 (152)
T ss_dssp             TBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCCCEEechhhcCCCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999999998875         333332 1 33444332     5677788887774

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=99.90  E-value=5.7e-24  Score=171.16  Aligned_cols=126  Identities=21%  Similarity=0.323  Sum_probs=104.5

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      ||.++.+||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++||
T Consensus         2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~-~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   80 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHP   80 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEE-CCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccC
Confidence            4667889999999999999999999997 66799999999999999999999986655  89999999999999999999


Q ss_pred             ceeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           83 TFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        83 ~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      |+..+|.+|++++.+.|.+++         +++|.. + ++++|.++     ++++.|.+.++++
T Consensus        81 nv~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~  145 (154)
T 2c2v_B           81 NVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW  145 (154)
T ss_dssp             TBCTTCBBCCHHHHTSCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCccCCeEEchhccCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999989998874         333332 1 33444332     5677788887774

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=99.90  E-value=1.3e-23  Score=163.21  Aligned_cols=82  Identities=32%  Similarity=0.582  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                     ++++|+++|+++|.||++|
T Consensus         6 ~a~~RL~kEl~~l~~~~~~~~~~~-------------------------------------~~~~~l~~w~~~i~GP~~t   48 (125)
T 2fo3_A            6 NANYRIQKELHNFLNNPPINCTLD-------------------------------------VHPNNIRIWIVKYVGLENT   48 (125)
T ss_dssp             ---CHHHHHHHHHHHSCCTTEEEE-------------------------------------ECTTCTTEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------eCcchhhhhheEEeCCCCC
Confidence            345799999999998876666654                                     5778999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCC-cCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKV-WHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i-~hpnv~~~~  286 (289)
                      ||+||.|+++|.||++||++||+|+|.|++ |||||+.+|
T Consensus        49 pYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G   88 (125)
T 2fo3_A           49 IYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNG   88 (125)
T ss_dssp             TTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTS
T ss_pred             CcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcCCCCC
Confidence            999999999999999999999999999997 999999765

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=99.90  E-value=2e-23  Score=167.39  Aligned_cols=125  Identities=23%  Similarity=0.400  Sum_probs=104.4

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      |..+.+||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++|||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (150)
T 1z2u_A            2 SHMALKRIQKELQDLGRDPPAQCSAGP-VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   80 (150)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCSSEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEE-CCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCc
Confidence            567899999999999999999999997 55799999999999999999999886655  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      +..+|.+|++++.+.|.+++         +++|.. + ++++|..     .++++.|.+.++++
T Consensus        81 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~  144 (150)
T 1z2u_A           81 INSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREW  144 (150)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCCeEeeccccCCCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998874         334432 1 3344433     25677788877763

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=99.90  E-value=2.9e-23  Score=168.73  Aligned_cols=126  Identities=22%  Similarity=0.390  Sum_probs=104.9

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      .++.+.+||+||+++|++++++|+.+.+ +++|+++|.+.|.||++|+|+||.|.+.|  +++||++||+|+|.++++||
T Consensus        18 ~~~~~~~RL~kEl~~l~~~~~~gi~~~~-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP   96 (166)
T 2ayv_A           18 YFQGALKRINKELNDLSKDPPTNCSAGP-VGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHP   96 (166)
T ss_dssp             -CTTHHHHHHHHHHHHHHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred             cCcHHHHHHHHHHHHHHhCCCCCEEEEE-cCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCC
Confidence            4556889999999999999999999997 67799999999999999999999986655  89999999999999999999


Q ss_pred             ceeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           83 TFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        83 ~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      |+..+|.+|++++.+.|.+++         +++|.. + ++++|..+     ++++.|.+.++++
T Consensus        97 NI~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~  161 (166)
T 2ayv_A           97 NINSQGAICLDILKDQWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREW  161 (166)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cCCCCCeEEcccccccCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999999998875         333332 1 33444332     5777788877763

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=99.89  E-value=3.8e-23  Score=162.75  Aligned_cols=84  Identities=31%  Similarity=0.581  Sum_probs=75.4

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ....+|+++|++++.++.+.++.+.                                     ++++|+++|+++|.||++
T Consensus        19 ~~~~~RL~kEl~~l~~~~~~~~~~~-------------------------------------~~~~nl~~W~~~I~GP~~   61 (136)
T 2h2y_A           19 GNANYRIQKELNNFLKNPPINCTID-------------------------------------VHPSNIRIWIVQYVGLEN   61 (136)
T ss_dssp             TSHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ECTTCTTEEEEEEECCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEE-------------------------------------eccccccccEEEEECCCC
Confidence            3566899999999998876666654                                     567899999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCC-cCCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV-WHPNVYEGTA  287 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i-~hpnv~~~~~  287 (289)
                      |||+||.|+++|.||++||++||+|+|.|++ |||||+.+|.
T Consensus        62 tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv~~~G~  103 (136)
T 2h2y_A           62 TIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTHVYSNGD  103 (136)
T ss_dssp             STTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTTBCTTCC
T ss_pred             CceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCcCCCCCE
Confidence            9999999999999999999999999999997 9999998653

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.89  E-value=3.7e-23  Score=168.83  Aligned_cols=126  Identities=20%  Similarity=0.274  Sum_probs=106.2

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      |+++.+||+||+++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.+  +++||++||+|+|.++++|||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~-~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   80 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQ-DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN   80 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEe-CCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCcccc
Confidence            678999999999999999999999996 77899999999999999999999886655  899999999999999999999


Q ss_pred             eeccceeeCcccc----CccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhh
Q psy621           84 FEASSFISAPLYT----ESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLW  132 (289)
Q Consensus        84 ~e~~~~~~~~~~~----~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~  132 (289)
                      +..+|.+|++++.    +.|.+++         +++|.. + ++++|.++     ++.+.|.+.++++-
T Consensus        81 v~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~  149 (169)
T 1yh2_A           81 IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWT  149 (169)
T ss_dssp             BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999987    8998885         333332 1 33444332     57788888888743

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=99.89  E-value=2.2e-23  Score=170.47  Aligned_cols=100  Identities=31%  Similarity=0.573  Sum_probs=91.7

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      ..++.+.+||+|||++|++++++|+.+.+.+++|+++|.+.|.||++|+|+||.|.+.|  +++||++||+|+|.++++|
T Consensus        13 ~~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~H   92 (172)
T 2awf_A           13 GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWH   92 (172)
T ss_dssp             CCCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCcc
Confidence            45678999999999999999999999998777899999999999999999999986655  8999999999999999999


Q ss_pred             cceeccceeeCcccc-------------CccchHH
Q psy621           82 KTFEASSFISAPLYT-------------ESWLRSF  103 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~-------------~~Wl~~y  103 (289)
                      ||+..+|.+|++++.             +.|.+++
T Consensus        93 PNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~  127 (172)
T 2awf_A           93 PNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIH  127 (172)
T ss_dssp             TTBCTTCBBCCGGGSCC---------CTTSCCTTC
T ss_pred             CCCCCCCcEehhhcCCcccccccccccCCCCCCcC
Confidence            999999999999985             6898874

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=99.89  E-value=2.1e-23  Score=167.79  Aligned_cols=83  Identities=31%  Similarity=0.628  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|
T Consensus         5 ~~~~RL~kEl~~l~~~~~~~i~~~-------------------------------------~~~~~l~~w~~~i~GP~~t   47 (154)
T 2c2v_B            5 GLPRRIIKETQRLLAEPVPGIKAE-------------------------------------PDESNARYFHVVIAGPQDS   47 (154)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEE-------------------------------------ECSSCTTEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------ECCCchheEEEEEECCCCC
Confidence            345799999999999877777765                                     5678999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        48 pyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~   87 (154)
T 2c2v_B           48 PFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR   87 (154)
T ss_dssp             TTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTCB
T ss_pred             CcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCccCCe
Confidence            9999999999999999999999999999999999997753

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=99.89  E-value=3.7e-23  Score=167.11  Aligned_cols=84  Identities=33%  Similarity=0.603  Sum_probs=76.5

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      +....+|+++|++++.++.+.++.+.                                     ++++|+++|+++|.||+
T Consensus        11 s~~~~~RL~kEl~~l~~~~~~gi~~~-------------------------------------~~~~~l~~w~~~i~Gp~   53 (158)
T 1zdn_A           11 PPHIIRLVYKEVTTLTADPPDGIKVF-------------------------------------PNEEDLTDLQVTIEGPE   53 (158)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ECSSCTTEEEEEEECCT
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------ECCCChhheeEEEECCC
Confidence            34566899999999999877777765                                     57889999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      +|||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        54 ~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   94 (158)
T 1zdn_A           54 GTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANG   94 (158)
T ss_dssp             TSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTS
T ss_pred             CCCccCcEEEEEEEcCCCCCCCCCEEEeccCcccCCCCCCC
Confidence            99999999999999999999999999999999999999875

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=99.89  E-value=3.7e-23  Score=165.95  Aligned_cols=83  Identities=39%  Similarity=0.786  Sum_probs=75.6

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ....+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++
T Consensus         3 ~~a~~RL~kEl~~l~~~~~~~i~~~-------------------------------------p~~~nl~~w~~~i~Gp~~   45 (151)
T 4gpr_A            3 AMAMRRIQKELREIQQDPPCNCSAG-------------------------------------PVGDDIFHWTATITGPDD   45 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ESSSCTTEEEEEEECCSS
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCCceEEEEEEeCCCC
Confidence            3456899999999999877777765                                     567899999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        46 tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G   85 (151)
T 4gpr_A           46 SPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNINKNG   85 (151)
T ss_dssp             STTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             CCcCCCEEEEEEECCCCCCCCcceeEEecCcccceECCCC
Confidence            9999999999999999999999999999999999999755

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.89  E-value=3.8e-23  Score=168.74  Aligned_cols=83  Identities=30%  Similarity=0.616  Sum_probs=75.7

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ....+|+++|++++.++.+.++.+.                                     ++++|+++|+++|.||++
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~gi~~~-------------------------------------~~~~~l~~w~~~I~GP~~   45 (169)
T 1yh2_A            3 MQRASRLKRELHMLATEPPPGITCW-------------------------------------QDKDQMDDLRAQILGGAN   45 (169)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ESSSCTTEEEEEEECCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------eCCCchheEEEEEECCCC
Confidence            3556899999999999877777765                                     578899999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        46 tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G   85 (169)
T 1yh2_A           46 TPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAG   85 (169)
T ss_dssp             STTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             CCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccCCcCC
Confidence            9999999999999999999999999999999999999765

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.89  E-value=4.7e-23  Score=162.81  Aligned_cols=85  Identities=22%  Similarity=0.421  Sum_probs=71.4

Q ss_pred             hHHHHHHHHHHHHHHh-CCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCC--CcceEEEEEeCC
Q psy621          168 NMEKEMVKELRRIAHE-SSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDD--NLFEWEVAIFGP  244 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~-~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~--~~~~w~~~i~gp  244 (289)
                      .+.+|+++|++++.++ .+.++.+.-                                    .+++  |+++|+++|.||
T Consensus         6 ~~~~RL~kEl~~l~~~~~~~~~~~~~------------------------------------~~~~d~nl~~w~~~i~GP   49 (138)
T 1jat_B            6 PRNFRLLEELEKGEKGFGPESCSYGL------------------------------------ADSDDITMTKWNGTILGP   49 (138)
T ss_dssp             CHHHHHHHHHHHHHC----CCEEEEE------------------------------------SSTTCTTCCEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEe------------------------------------CCCCCCcceEEEEEEECC
Confidence            4557999999999887 455665541                                    2333  699999999999


Q ss_pred             CCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCCc
Q psy621          245 PDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ  288 (289)
Q Consensus       245 ~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~~  288 (289)
                      ++|||+||+|+++|.||++||++||+|+|.|+||||||+.+||.
T Consensus        50 ~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~~G~   93 (138)
T 1jat_B           50 PHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGE   93 (138)
T ss_dssp             SSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCB
T ss_pred             CCCCccceEEEEEEECCCCCCCCCCceEEEcccccCCEeCCCCE
Confidence            99999999999999999999999999999999999999998664

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=99.89  E-value=3.2e-23  Score=168.93  Aligned_cols=82  Identities=32%  Similarity=0.752  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|
T Consensus         4 ~a~~RL~kEl~~l~~~~~~gi~~~-------------------------------------p~~~nl~~W~~~I~GP~~t   46 (169)
T 1ayz_A            4 PARRRLMRDFKRMKEDAPPGVSAS-------------------------------------PLPDNVMVWNAMIIGPADT   46 (169)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------ecCCccccceEEEECCCCC
Confidence            456899999999998877777765                                     5678999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        47 pYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI~~~G   85 (169)
T 1ayz_A           47 PYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANG   85 (169)
T ss_dssp             TTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTS
T ss_pred             CcCCCEEEEEEECcccCCCCCCccccccCCccCCCCCCC
Confidence            999999999999999999999999999999999999855

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=99.89  E-value=3.5e-23  Score=165.91  Aligned_cols=83  Identities=36%  Similarity=0.785  Sum_probs=75.0

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ....+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~-------------------------------------~~~~~l~~w~~~i~Gp~~   45 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAG-------------------------------------PVGDDLFHWQATIMGPPE   45 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEE-------------------------------------EETTEEEEEEEEEECCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------ECCCcceEEEEEEECCCC
Confidence            3456899999999998877676664                                     466899999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        46 tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   85 (150)
T 1z2u_A           46 SPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG   85 (150)
T ss_dssp             STTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             CCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCCCCC
Confidence            9999999999999999999999999999999999999865

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=99.89  E-value=4.9e-23  Score=167.39  Aligned_cols=85  Identities=36%  Similarity=0.740  Sum_probs=76.4

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      .....+|+++|++++.++.+.++.+.                                     ++++|+++|+++|.||+
T Consensus        19 ~~~~~~RL~kEl~~l~~~~~~gi~~~-------------------------------------~~~~nl~~W~~~I~GP~   61 (166)
T 2ayv_A           19 FQGALKRINKELNDLSKDPPTNCSAG-------------------------------------PVGDDMFHWQATIMGPE   61 (166)
T ss_dssp             CTTHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ECSSCTTEEEEEEECCT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCCcceeeEEEECCC
Confidence            34566899999999998877777665                                     56789999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        62 ~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~G~  103 (166)
T 2ayv_A           62 DSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYHPNINSQGA  103 (166)
T ss_dssp             TSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCB
T ss_pred             CCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcCCcCCCCCe
Confidence            999999999999999999999999999999999999998653

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=99.89  E-value=3.3e-23  Score=166.89  Aligned_cols=125  Identities=20%  Similarity=0.323  Sum_probs=105.5

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      ++.+.+||+||+++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.+  +++||++||+|+|.++++|||
T Consensus         3 ~~~~~~RL~kE~~~l~~~~~~~i~~~~-~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   81 (155)
T 1jat_A            3 AASLPKRIIKETEKLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPN   81 (155)
T ss_dssp             CCSCCHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEE-CCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCC
Confidence            345779999999999999999999997 56799999999999999999999886655  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      +..+|.+|++++.+.|.+++         +++|.. + ++++|.++     ++.+.|.+.++++
T Consensus        82 v~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~  145 (155)
T 1jat_A           82 IDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREW  145 (155)
T ss_dssp             BCTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCCEEEchhhccCCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            99999999999999998874         333332 1 44555544     5778888888774

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=99.89  E-value=3.3e-23  Score=165.88  Aligned_cols=79  Identities=33%  Similarity=0.655  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      +|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|||+
T Consensus         4 ~RL~kEl~~l~~~~~~~i~~~-------------------------------------~~~~~l~~w~~~i~Gp~~tpye   46 (149)
T 2r0j_A            4 RRITKETQNLANEPPPGIMAV-------------------------------------PVPENYRHFNILINGPDGTPYE   46 (149)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTTSTTT
T ss_pred             HHHHHHHHHHHhCCCCCEEEE-------------------------------------ECCCcccEEEEEEECCCCCCcC
Confidence            689999999998877777765                                     5678999999999999999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        47 gg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   82 (149)
T 2r0j_A           47 GGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG   82 (149)
T ss_dssp             TCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             CCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence            999999999999999999999999999999999875

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=99.89  E-value=5.9e-23  Score=165.64  Aligned_cols=83  Identities=37%  Similarity=0.815  Sum_probs=75.6

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ....+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i~~~-------------------------------------p~~~~l~~w~~~i~Gp~~   50 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGITAF-------------------------------------PDGDNLFKWVATLDGPKD   50 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEE-------------------------------------ESSSCTTEEEEEEECCTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------ECCCCccEEEEEEECCCC
Confidence            3466899999999998877777765                                     567899999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        51 tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   90 (156)
T 2e2c_A           51 TVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSG   90 (156)
T ss_dssp             STTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             CCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCCCccCc
Confidence            9999999999999999999999999999999999999865

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=99.89  E-value=7.8e-23  Score=165.43  Aligned_cols=127  Identities=20%  Similarity=0.325  Sum_probs=104.9

Q ss_pred             CCChHHHHHHHHHHHHhhhC---CCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecc
Q psy621            4 VPTSSALRALSMEYKSLQEE---PVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIE   78 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~---~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~   78 (289)
                      +|++.+.+||+||+++|+++   +++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++
T Consensus         4 ~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   82 (159)
T 2bep_A            4 AMANIAVQRIKREFKEVLKSEETSKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK   82 (159)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEE-CSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             cchHHHHHHHHHHHHHHHhcCCCCCCCEEEEe-CCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCC
Confidence            57778999999999999985   688999997 56799999999999999999999986655  8999999999999999


Q ss_pred             cccccee-ccceeeCccccCccchHH---------HHHhhhc--ccccccCC-----CchhhHHHHhHHh
Q psy621           79 NLTKTFE-ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        79 ~~~~~~e-~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      ++|||+. .+|.+|++++.+.|.+++         +++|...  ++++|..+     ++++.|.+.++++
T Consensus        83 i~HPni~~~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~  152 (159)
T 2bep_A           83 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLW  152 (159)
T ss_dssp             CCBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCccCCCCCCCEEeChhhhccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            9999998 589999999999998875         3334321  33334332     5777788887773

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=99.89  E-value=8.5e-23  Score=166.16  Aligned_cols=83  Identities=36%  Similarity=0.779  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                    |.+++|+++|+++|.||++|
T Consensus         3 ~a~~RL~kEl~~l~~~~~~gi~~~------------------------------------~~~~~nl~~w~~~I~Gp~~t   46 (164)
T 3h8k_A            3 TALKRLMAEYKQLTLNPPEGIVAG------------------------------------PMNEENFFEWEALIMGPEDT   46 (164)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE------------------------------------ESSTTCTTEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE------------------------------------ECCCCCccEEEEEEeCCCCC
Confidence            456899999999999877777764                                    13455999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        47 pyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV~~~G   85 (164)
T 3h8k_A           47 CFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNIYPDG   85 (164)
T ss_dssp             TTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTS
T ss_pred             CCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCCCCCC
Confidence            999999999999999999999999999999999998755

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=99.89  E-value=3.8e-23  Score=168.42  Aligned_cols=100  Identities=20%  Similarity=0.292  Sum_probs=91.9

Q ss_pred             CCCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccc
Q psy621            3 QVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENL   80 (289)
Q Consensus         3 ~~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~   80 (289)
                      .+|++.+.+||+||+++|++++++|+.+.+ .++|+++|.+.|.||++|+|+||.|.+.|  +++||++||+|+|.++++
T Consensus        18 ~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~   96 (169)
T 1yrv_A           18 GSMHGRAYLLLHRDFCDLKENNYKGITAKP-VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPF   96 (169)
T ss_dssp             TGGGCHHHHHHHHHHHHHHHHCCTTEEEEE-CSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCC
T ss_pred             CccChHHHHHHHHHHHHHHhCCCCCEEEEE-cCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCc
Confidence            367788999999999999999999999987 66799999999999999999999986655  899999999999999999


Q ss_pred             ccce-eccceeeCcccc--CccchHH
Q psy621           81 TKTF-EASSFISAPLYT--ESWLRSF  103 (289)
Q Consensus        81 ~~~~-e~~~~~~~~~~~--~~Wl~~y  103 (289)
                      |||+ ..+|.+|++++.  +.|.+++
T Consensus        97 HPNI~~~~G~ICL~iL~~~~~WsP~~  122 (169)
T 1yrv_A           97 HPNVDPHTGQPCIDFLDNPEKWNTNY  122 (169)
T ss_dssp             CTTBCTTTCCBCCHHHHCGGGCCTTC
T ss_pred             cCcccCCCCeEeehhhcCCcCCCCcC
Confidence            9999 799999999998  8998874

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=99.89  E-value=5.3e-23  Score=166.68  Aligned_cols=128  Identities=20%  Similarity=0.301  Sum_probs=102.8

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCC-C---CceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceec
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVND-D---NLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQI   77 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~-~---n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~   77 (289)
                      ..|.+|.+||+|||++|++++++|+.+.+..+ |   |+++|++.|.||++|+|+||.|.+.+  +++||++||+++|.+
T Consensus         6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t   85 (163)
T 3rcz_B            6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP   85 (163)
T ss_dssp             ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence            45778999999999999999999999997543 2   89999999999999999999986665  799999999999999


Q ss_pred             cccccceeccceeeCccccCc--cchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           78 ENLTKTFEASSFISAPLYTES--WLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        78 ~~~~~~~e~~~~~~~~~~~~~--Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      +++|||+..+|.+|++++...  |.+++         +.+|.. + ++++|..     .++.+.|.+.++++
T Consensus        86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~  157 (163)
T 3rcz_B           86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQ  157 (163)
T ss_dssp             CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999999998765  98874         333332 1 2333332     25677788877774

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=99.89  E-value=6.3e-23  Score=164.80  Aligned_cols=82  Identities=35%  Similarity=0.844  Sum_probs=74.6

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|
T Consensus         4 ~a~~RL~~E~~~l~~~~~~~i~~~-------------------------------------~~~~~l~~w~~~i~Gp~~t   46 (152)
T 2aak_A            4 PARKRLMRDFKRLQQDPPAGISGA-------------------------------------PQDNNIMLWNAVIFGPDDT   46 (152)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------eCCCCccEEEEEEeCCCCC
Confidence            456899999999999876676664                                     5678999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        47 pyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   85 (152)
T 2aak_A           47 PWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADG   85 (152)
T ss_dssp             TTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTS
T ss_pred             CccCCEEEEEEECCCCCCCCCCEEEEecCcccCCCCCCC
Confidence            999999999999999999999999999999999999854

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=99.89  E-value=4.7e-23  Score=166.99  Aligned_cols=85  Identities=29%  Similarity=0.626  Sum_probs=75.0

Q ss_pred             CCchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCC-----CcceEEE
Q psy621          165 TDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDD-----NLFEWEV  239 (289)
Q Consensus       165 ~~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~-----~~~~w~~  239 (289)
                      .+....+|+++|++++.++.+.++++.                                     +.++     |+++|++
T Consensus         7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~-------------------------------------p~~~~d~~~nl~~W~~   49 (163)
T 3rcz_B            7 HSSLCKTRLQEERKQWRRDHPFGFYAK-------------------------------------PCKSSDGGLDLMNWKV   49 (163)
T ss_dssp             --CHHHHHHHHHHHHHHHSCCTTCEEE-------------------------------------EEECTTSSEEEEEEEE
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EccCcCCCCCccEEEE
Confidence            355677899999999999987777765                                     3333     9999999


Q ss_pred             EEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          240 AIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       240 ~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      +|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        50 ~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~i~HPnV~~~G   96 (163)
T 3rcz_B           50 GIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSG   96 (163)
T ss_dssp             EEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTS
T ss_pred             EEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCCCccCCCCCCC
Confidence            99999999999999999999999999999999999999999999655

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=99.89  E-value=4.7e-23  Score=166.31  Aligned_cols=127  Identities=20%  Similarity=0.254  Sum_probs=102.6

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCC----CCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIE   78 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~----~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~   78 (289)
                      |++.+.+||+||+++|++++++|+.+.+..+    +|+++|++.|.||++|+|+||.|++.|  +++||++||+++|.++
T Consensus         1 Ms~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~   80 (157)
T 2gjd_A            1 MSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAG   80 (157)
T ss_dssp             --CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTT
T ss_pred             CChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCC
Confidence            4558899999999999999999999987532    489999999999999999999986655  8999999999999999


Q ss_pred             ccccceeccceeeCccccC--ccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           79 NLTKTFEASSFISAPLYTE--SWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        79 ~~~~~~e~~~~~~~~~~~~--~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      ++|||+..+|.+|++++..  .|.+++         +++|.. + ++++|..     .++.+.|.+.++++
T Consensus        81 i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~  151 (157)
T 2gjd_A           81 FYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQ  151 (157)
T ss_dssp             CCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999999999877  798874         333332 1 2333332     25677787777763

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=99.89  E-value=4.8e-23  Score=164.91  Aligned_cols=121  Identities=17%  Similarity=0.290  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceecc
Q psy621           10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEAS   87 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~   87 (289)
                      .+||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++|||+..+
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~   81 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVP-VPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   81 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEE-CCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCC
Confidence            58999999999999999999997 56799999999999999999999986655  8999999999999999999999999


Q ss_pred             ceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           88 SFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        88 ~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      |.+|++++.+.|.+++         +++|.. + ++++|..+     ++++.|.+.++++
T Consensus        82 G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~  141 (149)
T 2r0j_A           82 GRICLDILKDKWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQW  141 (149)
T ss_dssp             CBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHH
T ss_pred             CEEechhcCCCCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999998885         334432 1 34444432     5778888888774

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=99.89  E-value=5.2e-23  Score=168.88  Aligned_cols=128  Identities=21%  Similarity=0.282  Sum_probs=106.3

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      |++.+.+||+|||++|++++++||.+.+ +++|+++|++.|.||++|+|+||.|++.|  +++||++||+|+|.++++||
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HP  105 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAFP-ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHP  105 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEEE-ETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCST
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEE-cCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccC
Confidence            4677899999999999999999999987 66799999999999999999999986655  89999999999999999999


Q ss_pred             ceeccceeeCccccCccchHH---------HHHhhh-c-ccccc-----cCCCchhhHHHHhHHhhcc
Q psy621           83 TFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLN-----VTIDTREGFLKTLNDLWLF  134 (289)
Q Consensus        83 ~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n-----~~~~~~~~F~~~l~~~~~~  134 (289)
                      |+..+|.+|++++.+.|.+++         +.+|.. + ++++|     +. ++.+.|.+.+++....
T Consensus       106 NV~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~  172 (179)
T 1i7k_A          106 NVDTQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSK  172 (179)
T ss_dssp             TBCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHT
T ss_pred             ccccCCeEEcccCcCcCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHH
Confidence            999999999999999998885         333332 1 23333     34 7888899988886554

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=99.89  E-value=4.3e-23  Score=160.25  Aligned_cols=96  Identities=17%  Similarity=0.205  Sum_probs=86.4

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc-cccc
Q psy621            7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN-LTKT   83 (289)
Q Consensus         7 ~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~-~~~~   83 (289)
                      ++|.+||+||++++++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.+++ +|||
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~~~-~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn   83 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTH   83 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEEEE-CTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTT
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEe-CcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCc
Confidence            35789999999999999999999986 77899999999999999999999986655  89999999999999996 9999


Q ss_pred             eeccceeeCccccCccchHH
Q psy621           84 FEASSFISAPLYTESWLRSF  103 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y  103 (289)
                      +..+|.+|++++.+.|.+++
T Consensus        84 v~~~G~iCl~iL~~~W~P~~  103 (125)
T 2fo3_A           84 VYSNGDICLSLLGDDYNPSL  103 (125)
T ss_dssp             BCTTSBBCCGGGTTTCCTTC
T ss_pred             CCCCCEEEchhcCCCCCCCC
Confidence            99999999999999998885

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=99.89  E-value=9.2e-23  Score=166.13  Aligned_cols=82  Identities=24%  Similarity=0.534  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|
T Consensus        23 ~a~~RL~kEl~~l~~~~~~gi~~~-------------------------------------p~~~nl~~W~~~I~GP~~T   65 (169)
T 1yrv_A           23 RAYLLLHRDFCDLKENNYKGITAK-------------------------------------PVSEDMMEWEVEIEGLQNS   65 (169)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTEEEE-------------------------------------ECSTTSCEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCccccceeEEECCCCC
Confidence            456899999999999877777665                                     5678999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCC-CCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV-YEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv-~~~~  286 (289)
                      ||+||+|+++|.||++||++||+|+|.|+|||||| +.+|
T Consensus        66 pYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G  105 (169)
T 1yrv_A           66 VWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTG  105 (169)
T ss_dssp             TTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTC
T ss_pred             CccceEEEEEEECCccCCCCCCcceecCCCccCcccCCCC
Confidence            99999999999999999999999999999999999 5444

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=99.89  E-value=8.1e-23  Score=166.02  Aligned_cols=85  Identities=35%  Similarity=0.749  Sum_probs=76.2

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      .....+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||+
T Consensus        17 ~~~~~~RL~kEl~~l~~~~~~gi~~~-------------------------------------p~~~nl~~W~~~I~GP~   59 (165)
T 2c4o_A           17 GSMALKRIHKELNDLARDPPAQCSAG-------------------------------------PVGDDMFHWQATIMGPN   59 (165)
T ss_dssp             CHHHHHHHHHHHHHHHSSCCTTEEEE-------------------------------------ESSSCTTEEEEEEECCT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCCcceeEEEEECCC
Confidence            34566899999999998877777665                                     56789999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        60 ~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HPnV~~~G~  101 (165)
T 2c4o_A           60 DSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGS  101 (165)
T ss_dssp             TSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBTTBCTTCB
T ss_pred             CCCccCceEEEEEECCCcCCCCCCEEEEecCCcCCcCCCCCe
Confidence            999999999999999999999999999999999999998653

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=99.89  E-value=5.8e-23  Score=164.48  Aligned_cols=81  Identities=30%  Similarity=0.720  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCC-CcceEEEEEeCCCCCC
Q psy621          170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDD-NLFEWEVAIFGPPDTL  248 (289)
Q Consensus       170 ~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~-~~~~w~~~i~gp~~t~  248 (289)
                      .+|+++|++++.++.+.++.+.                                     +.++ |+++|+++|.||++||
T Consensus         3 ~~RL~~El~~l~~~~~~~i~~~-------------------------------------~~~~~~l~~w~~~I~Gp~~tp   45 (149)
T 1fxt_A            3 AKRIMKEIQAVKDDPAAHITLE-------------------------------------FVSESDIHHLKGTFLGPPGTP   45 (149)
T ss_dssp             HHHHHHHHHHHHHCGGGCCEEE-------------------------------------ESSSSCSSEEEEEEECCSSST
T ss_pred             HHHHHHHHHHHHhCCCCCEEEE-------------------------------------ECCCCCceEEEEEEECCCCCC
Confidence            4799999999998866555554                                     3444 9999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        46 yegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G   84 (149)
T 1fxt_A           46 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTG   84 (149)
T ss_dssp             TCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCSSSC
T ss_pred             cCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcCCCC
Confidence            999999999999999999999999999999999998444

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=99.89  E-value=6.5e-23  Score=168.33  Aligned_cols=85  Identities=35%  Similarity=0.692  Sum_probs=75.7

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      +....+|+++|++++.++...++.+.                                     ++++|+++|+++|.||+
T Consensus        28 ~~~~~~RL~kEl~~l~~~~~~gi~~~-------------------------------------p~~~nl~~W~~~I~GP~   70 (179)
T 1i7k_A           28 RGPVGKRLQQELMTLMMSGDKGISAF-------------------------------------PESDNLFKWVGTIHGAA   70 (179)
T ss_dssp             --CHHHHHHHHHHHHHHHCCTTEEEE-------------------------------------EETTEEEEEEEEEEBCT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCcccccEEEEECCC
Confidence            34566899999999999877777665                                     56789999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        71 ~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G~  112 (179)
T 1i7k_A           71 GTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGN  112 (179)
T ss_dssp             TSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCB
T ss_pred             CCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCccccCCe
Confidence            999999999999999999999999999999999999998653

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=99.88  E-value=1e-22  Score=171.71  Aligned_cols=85  Identities=40%  Similarity=0.804  Sum_probs=76.7

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      .....+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||+
T Consensus        21 ~s~a~~RL~kEl~~l~~~~~~gi~~~-------------------------------------p~~~nl~~W~~~I~GP~   63 (216)
T 2pwq_A           21 GSKELLRLQKELKDIENENVQEIDAH-------------------------------------IKDSNFFEWVGFIKGPE   63 (216)
T ss_dssp             SCHHHHHHHHHHHHHHHSCTTTEEEE-------------------------------------ECSSCTTEEEEEEECCT
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCccceeEEEEeCCC
Confidence            44567899999999999877777765                                     56789999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        64 ~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G  105 (216)
T 2pwq_A           64 GTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTG  105 (216)
T ss_dssp             TSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTC
T ss_pred             CCCccceEEEEEEECCCcCCCCCCcccccCCCcCCCCcCCCC
Confidence            999999999999999999999999999999999999996555

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=99.88  E-value=7.9e-23  Score=160.94  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc-ccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN-LTK   82 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~-~~~   82 (289)
                      .+.+.+||+||+++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.+++ +||
T Consensus        18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~-~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HP   96 (136)
T 2h2y_A           18 LGNANYRIQKELNNFLKNPPINCTIDV-HPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHT   96 (136)
T ss_dssp             TTSHHHHHHHHHHHHHHSCCTTEEEEE-CTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCeEEEe-ccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCC
Confidence            446889999999999999999999986 67899999999999999999999986655  89999999999999996 999


Q ss_pred             ceeccceeeCccccCccchHH
Q psy621           83 TFEASSFISAPLYTESWLRSF  103 (289)
Q Consensus        83 ~~e~~~~~~~~~~~~~Wl~~y  103 (289)
                      |+..+|.+|++++.+.|.+++
T Consensus        97 nv~~~G~ICl~iL~~~WsP~~  117 (136)
T 2h2y_A           97 HVYSNGDICLSVLGDDYNPSL  117 (136)
T ss_dssp             TBCTTCCBCCGGGTTTCCTTC
T ss_pred             cCCCCCEEECccccCCCCCCC
Confidence            999999999999999999885

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=99.88  E-value=2.6e-23  Score=166.55  Aligned_cols=123  Identities=19%  Similarity=0.358  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceec
Q psy621            9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEA   86 (289)
Q Consensus         9 ~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~   86 (289)
                      +.+||+||+++|++++++|+.+.+.+++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++|||+..
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~   81 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence            569999999999999999999998655599999999999999999999986655  899999999999999999999998


Q ss_pred             -cceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           87 -SSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        87 -~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                       +|.+|++++.+.|.+++         +++|.. + ++++|.++     ++++.|.+.++++
T Consensus        82 ~~G~iCl~iL~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~  143 (149)
T 1fxt_A           82 VTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALW  143 (149)
T ss_dssp             SSCCBCCHHHHTSCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHH
T ss_pred             CCCeEeCCcCCCCCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence             99999999999998884         333332 1 23333322     4667787777763

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=99.88  E-value=1.3e-22  Score=165.26  Aligned_cols=83  Identities=37%  Similarity=0.799  Sum_probs=74.3

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++...++.+.                                    |.+++|+++|+++|.||++|
T Consensus         4 ~a~~RL~kEl~~l~~~~~~gi~~~------------------------------------~~~~~~l~~w~~~i~GP~~t   47 (165)
T 2ucz_A            4 TAQKRLLKELQQLIKDSPPGIVAG------------------------------------PKSENNIFIWDCLIQGPPDT   47 (165)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE------------------------------------ESSSSCCSEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE------------------------------------ECCCCCccEEEEEEECCCCC
Confidence            456899999999988876677664                                    13557999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        48 pYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv~~~G   86 (165)
T 2ucz_A           48 PYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNG   86 (165)
T ss_dssp             TTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTS
T ss_pred             CccCcEEEEEEECCccCCCCCCEEEEeCCCccCCCCCCC
Confidence            999999999999999999999999999999999999865

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=99.88  E-value=8.2e-23  Score=165.57  Aligned_cols=128  Identities=21%  Similarity=0.297  Sum_probs=104.5

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecC----CCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceec
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVN----DDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQI   77 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~----~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~   77 (289)
                      +|++.+.+||+||+++|++++++|+.+.+..    ++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.+
T Consensus         3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   82 (161)
T 2grr_A            3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP   82 (161)
T ss_dssp             -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence            5778899999999999999999999998653    3689999999999999999999986655  899999999999999


Q ss_pred             cccccceeccceeeCccccC--ccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           78 ENLTKTFEASSFISAPLYTE--SWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        78 ~~~~~~~e~~~~~~~~~~~~--~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      +++|||+..+|.+|++++..  .|.+++         +++|.. + ++++|..     .++.+.|.+.++++
T Consensus        83 ~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~  154 (161)
T 2grr_A           83 PLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQ  154 (161)
T ss_dssp             CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            99999999999999999875  798774         333332 1 3333332     25677788887774

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=99.88  E-value=1.5e-22  Score=165.61  Aligned_cols=86  Identities=42%  Similarity=0.870  Sum_probs=76.2

Q ss_pred             CCchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCC
Q psy621          165 TDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGP  244 (289)
Q Consensus       165 ~~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp  244 (289)
                      .+....+++++|++++.++.+.++.+.                                    |.+++|+++|+++|.||
T Consensus        14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~------------------------------------p~~~~nl~~W~~~I~GP   57 (172)
T 2awf_A           14 LVPRGSLLLRRQLAELNKNPVEGFSAG------------------------------------LIDDNDLYRWEVLIIGP   57 (172)
T ss_dssp             CCCTTHHHHHHHHHHHHHSCCTTEEEE------------------------------------ESSTTCTTEEEEEEECC
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCEEEE------------------------------------ECCCccccccEEEEeCC
Confidence            345667899999999998876677664                                    13557999999999999


Q ss_pred             CCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          245 PDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       245 ~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        58 ~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HPNV~~~G   99 (172)
T 2awf_A           58 PDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNG   99 (172)
T ss_dssp             TTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             CCCCcCCcEEEEEEECCcccCCCCCcccccCCCccCCCCCCC
Confidence            999999999999999999999999999999999999999875

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=99.88  E-value=1.5e-22  Score=167.32  Aligned_cols=85  Identities=55%  Similarity=1.127  Sum_probs=76.5

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      +....+|+++|++++.++.+.++++.                                    +++++|+++|+++|.||+
T Consensus         5 ~~~a~kRL~kEl~~l~~~~~~gi~~~------------------------------------~~~~~nl~~W~~~I~Gp~   48 (183)
T 3rz3_A            5 SPSSQKALLLELKGLQEEPVEGFRVT------------------------------------LVDEGDLYNWEVAIFGPP   48 (183)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEE------------------------------------ECTTCCTTEEEEEEECCT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEE------------------------------------ecCccchhheeeeeeCCC
Confidence            45677899999999999877676654                                    157789999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      +|||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        49 ~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G   89 (183)
T 3rz3_A           49 NTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETG   89 (183)
T ss_dssp             TSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCTTBCTTS
T ss_pred             CCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccCCCCCCC
Confidence            99999999999999999999999999999999999999854

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=99.88  E-value=9.3e-23  Score=160.18  Aligned_cols=81  Identities=28%  Similarity=0.586  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      +|+++|++++.++.+.++.+.-                                   .++++|+++|+++|.||++|||+
T Consensus        25 ~RL~kEl~~l~~~~~~gi~v~~-----------------------------------~~~~~nl~~W~~~I~GP~~TpYe   69 (136)
T 2a7l_A           25 KRLQKELLALQNDPPPGMTLNE-----------------------------------KSVQNSITQWIVDMEGAPGTLYE   69 (136)
T ss_dssp             HHHHHHHHHHHHSCCTTCCCCT-----------------------------------TCCCCSCEEEEEEEECCTTSTTT
T ss_pred             HHHHHHHHHHHhCCCCCEEEEE-----------------------------------eeCccccceeEEEEECCCCCccc
Confidence            7999999999988665554310                                   15678999999999999999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCc--CCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVW--HPNVYEGT  286 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~--hpnv~~~~  286 (289)
                      ||.|+++|.||++||++||+|+|.|++|  ||||+.+|
T Consensus        70 gG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV~~~G  107 (136)
T 2a7l_A           70 GEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNG  107 (136)
T ss_dssp             TCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTC
T ss_pred             cEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccCCCCC
Confidence            9999999999999999999999999999  99999865

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=99.88  E-value=8.6e-23  Score=164.48  Aligned_cols=81  Identities=33%  Similarity=0.657  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      ..+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++||
T Consensus         6 ~~~RL~kE~~~l~~~~~~~i~~~-------------------------------------~~~~~l~~w~~~I~Gp~~tp   48 (155)
T 1jat_A            6 LPKRIIKETEKLVSDPVPGITAE-------------------------------------PHDDNLRYFQVTIEGPEQSP   48 (155)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTTST
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEE-------------------------------------ECCCchhEEEEEEECCCCCC
Confidence            34799999999998877677665                                     56789999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        49 yegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   86 (155)
T 1jat_A           49 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG   86 (155)
T ss_dssp             TTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             ccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCCCC
Confidence            99999999999999999999999999999999999655

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=99.88  E-value=1e-22  Score=171.71  Aligned_cols=129  Identities=22%  Similarity=0.329  Sum_probs=107.3

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      .+++.+.+||+||+++|++++++|+.+.+ .++|+++|.+.|.||++|+|+||.|.+.|  +++||++||+++|.++++|
T Consensus        19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           19 FQGSKELLRLQKELKDIENENVQEIDAHI-KDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             CCSCHHHHHHHHHHHHHHHSCTTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             cccCHHHHHHHHHHHHHHhCCCCCEEEEE-cCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            45678999999999999999999999997 56799999999999999999999986655  8999999999999999999


Q ss_pred             ccee-ccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHhhc
Q psy621           82 KTFE-ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDLWL  133 (289)
Q Consensus        82 ~~~e-~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~~~  133 (289)
                      ||+. .+|.+|++++.+.|.+++         +++|...  ++++|..     .++.+.|.+.++++-.
T Consensus        98 PNI~~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~  166 (216)
T 2pwq_A           98 PNISSQTGAICLDVLKNEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTK  166 (216)
T ss_dssp             TTBCTTTCBBCCHHHHHHCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCcCCCCEEEchhhcccCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9998 589999999988998884         3344321  3344432     2577889998888443

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=99.88  E-value=1.6e-22  Score=167.14  Aligned_cols=100  Identities=39%  Similarity=0.683  Sum_probs=90.5

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      ++++++.|||+|||++|++++++|+.+.+.+++|+++|++.|.||++|+|+||.|++.|  +++||++||+++|.++++|
T Consensus         3 m~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (183)
T 3rz3_A            3 MGSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWH   82 (183)
T ss_dssp             --CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCC
T ss_pred             CcchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCcc
Confidence            34678999999999999999999999997688899999999999999999999986655  8999999999999999999


Q ss_pred             cceeccceeeCcccc-------------CccchHH
Q psy621           82 KTFEASSFISAPLYT-------------ESWLRSF  103 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~-------------~~Wl~~y  103 (289)
                      ||+..+|.+|++++.             +.|.+++
T Consensus        83 PnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~  117 (183)
T 3rz3_A           83 PNIYETGDVCISILHPPVDDPQSGELPSERWNPTQ  117 (183)
T ss_dssp             TTBCTTSBBCCTTC--------------CCCCTTC
T ss_pred             CCCCCCCcEehhhcCcccccccccccccCCCCCcC
Confidence            999999999999985             7898875

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=99.88  E-value=5e-23  Score=161.69  Aligned_cols=94  Identities=24%  Similarity=0.444  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEE-ecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceecccc--ccce
Q psy621           10 LRALSMEYKSLQEEPVEGFRVK-LVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIENL--TKTF   84 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~-~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~~~--~~~~   84 (289)
                      .+||+||+++|++++++|+.+. ..+++|+++|++.|.||++|+|+||.|.+.  ++++||++||+++|.++++  |||+
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV  103 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV  103 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence            3999999999999999999864 136789999999999999999999988655  5899999999999999998  9999


Q ss_pred             eccceeeCccccCccchHH
Q psy621           85 EASSFISAPLYTESWLRSF  103 (289)
Q Consensus        85 e~~~~~~~~~~~~~Wl~~y  103 (289)
                      ..+|.+|++++.+.|.+++
T Consensus       104 ~~~G~ICL~iL~~~WsP~~  122 (136)
T 2a7l_A          104 YSNGHICLSILTEDWSPAL  122 (136)
T ss_dssp             CTTCBBCCGGGTTTCCTTS
T ss_pred             CCCCeEEchhcCCCCCCCC
Confidence            9999999999999999886

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=99.88  E-value=2.9e-22  Score=166.48  Aligned_cols=124  Identities=21%  Similarity=0.391  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccce
Q psy621            7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTF   84 (289)
Q Consensus         7 ~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~   84 (289)
                      +.+.+||+|||++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|.+.|  +++||+.||+|+|.++++|||+
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV  125 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI  125 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeec-ccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence            55889999999999999999999996 67799999999999999999999986655  8999999999999999999999


Q ss_pred             eccceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           85 EASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        85 e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      ..+|.+|++++.+.|.+++         +.+|.. + ++++|..     .++++.|.+.++++
T Consensus       126 ~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~  188 (194)
T 3bzh_A          126 NSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQW  188 (194)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCceechhhhccCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999999998874         333332 1 3344432     25777788887774

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=99.88  E-value=2.6e-22  Score=162.33  Aligned_cols=83  Identities=36%  Similarity=0.749  Sum_probs=72.8

Q ss_pred             hHHHHHHHHHHHHHHh---CCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCC
Q psy621          168 NMEKEMVKELRRIAHE---SSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGP  244 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~---~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp  244 (289)
                      ...+|+++|++++.+.   ...++.+.                                     +.++|+++|+++|.||
T Consensus         8 ~a~~RL~kEl~~l~~~~~~~~~~i~~~-------------------------------------~~~~~l~~w~~~i~Gp   50 (159)
T 2bep_A            8 IAVQRIKREFKEVLKSEETSKNQIKVD-------------------------------------LVDENFTELRGEIAGP   50 (159)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTSEEEE-------------------------------------ECSSSSSEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhcCCCCCCCEEEE-------------------------------------eCCCchheEEEEEECC
Confidence            4568999999999874   34455554                                     5677999999999999


Q ss_pred             CCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          245 PDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       245 ~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        51 ~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~~~G   93 (159)
T 2bep_A           51 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG   93 (159)
T ss_dssp             TTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTC
T ss_pred             CCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCCccCCCCCCC
Confidence            9999999999999999999999999999999999999997555

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=99.88  E-value=1.6e-22  Score=167.90  Aligned_cols=59  Identities=41%  Similarity=0.930  Sum_probs=55.5

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        69 ~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNI~~~~G  127 (193)
T 2f4z_A           69 IVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG  127 (193)
T ss_dssp             EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTC
T ss_pred             EcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCCCeEEEecCCccCCCcCCCC
Confidence            45689999999999999999999999999999999999999999999999999996555

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=99.88  E-value=2.6e-22  Score=166.82  Aligned_cols=82  Identities=34%  Similarity=0.730  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|
T Consensus        48 ~a~~RL~kEl~~l~~~~~~gi~~~-------------------------------------p~~~nl~~W~~~I~GP~~T   90 (194)
T 3bzh_A           48 TSAKRIQKELADITLDPPPNCSAG-------------------------------------PKGDNIYEWRSTILGPPGS   90 (194)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ESSSCTTEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCceee-------------------------------------cccCccccceEEEeCCCCC
Confidence            456799999999998876677664                                     5778999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        91 pYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~G  129 (194)
T 3bzh_A           91 VYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQG  129 (194)
T ss_dssp             TTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTC
T ss_pred             CccCCEEEEEEECCCcCCCCCccccccCCCccceECCCC
Confidence            999999999999999999999999999999999999865

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.88  E-value=3.4e-22  Score=160.87  Aligned_cols=85  Identities=27%  Similarity=0.454  Sum_probs=72.2

Q ss_pred             chHHHHHHHHHHHHHHhCCCC-eEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCC--cceEEEEEeC
Q psy621          167 GNMEKEMVKELRRIAHESSLN-VSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDN--LFEWEVAIFG  243 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~-~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~--~~~w~~~i~g  243 (289)
                      ..+.+|+++|++++.++.+.+ +.+.                                    +++++|  +++|+++|.|
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~------------------------------------~~~~~d~~l~~W~~~I~G   67 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWG------------------------------------LEDDEDMTLTRWTGMIIG   67 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEE------------------------------------ESSTTCTTCCEEEEEEEC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEE------------------------------------ecCCccccceeeEEEEEC
Confidence            446689999999998876544 3333                                    135554  9999999999


Q ss_pred             CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          244 PPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       244 p~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        68 P~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G  111 (160)
T 2a4d_A           68 PPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNG  111 (160)
T ss_dssp             CTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTC
T ss_pred             CCCCCccCeEEEEEEECCCcCCCCCcEEEEecCceeCCEECCCC
Confidence            99999999999999999999999999999999999999995444

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.87  E-value=3.6e-22  Score=160.41  Aligned_cols=85  Identities=28%  Similarity=0.361  Sum_probs=73.0

Q ss_pred             CchHHHHHHHHHHHHHHh-CCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccC--CCCcceEEEEEe
Q psy621          166 DGNMEKEMVKELRRIAHE-SSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVN--DDNLFEWEVAIF  242 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~-~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~--~~~~~~w~~~i~  242 (289)
                      ...+.+|+++|++++.++ .+.++.+.-                                    .+  +.|+++|+++|.
T Consensus        19 ~~~~~~RL~kEl~~l~~~~~~~~i~~~~------------------------------------~~~~d~nl~~W~~~I~   62 (156)
T 2q0v_A           19 IVPRSFRLLDELERGQKGNVSEGVSFGL------------------------------------ESADDITLSNWSCTIF   62 (156)
T ss_dssp             CCCHHHHHHHHHHHHHCC-CCTTEEEEE------------------------------------SSTTCTTCCEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHhCCCCCCeEEEE------------------------------------CCCccccceeeEEEEE
Confidence            345568999999999887 455665541                                    23  236999999999


Q ss_pred             CCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          243 GPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       243 gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        63 GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G  106 (156)
T 2q0v_A           63 GQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCG  106 (156)
T ss_dssp             CCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTS
T ss_pred             CCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccccCCCccCC
Confidence            99999999999999999999999999999999999999999875

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=99.87  E-value=2.1e-22  Score=167.13  Aligned_cols=125  Identities=18%  Similarity=0.264  Sum_probs=99.7

Q ss_pred             ChHHHHHHHHHHHHhhhCCC-------------CCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCC
Q psy621            6 TSSALRALSMEYKSLQEEPV-------------EGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWD   70 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~-------------~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~   70 (289)
                      +..+.+||+|||++|+++++             +|+.+.+ .++|+++|++.|.||++|+|+||.|.+.|  +++||++|
T Consensus        30 ~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P  108 (193)
T 2f4z_A           30 TPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQI-VGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP  108 (193)
T ss_dssp             --CHHHHHHHHHHHHHHC----------------CEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEE-cCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCC
Confidence            34578999999999999887             7999997 55799999999999999999999986655  89999999


Q ss_pred             cccceecccccccee-ccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621           71 VNVQNQIENLTKTFE-ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        71 P~v~~~~~~~~~~~e-~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      |+|+|.++++|||+. .+|.+|++++.+.|.+++         +.+|...  ++++|..     .++++.|.+.++++
T Consensus       109 P~V~F~T~i~HPNI~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar~~  186 (193)
T 2f4z_A          109 PKMKFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLW  186 (193)
T ss_dssp             CEEEESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CeEEEecCCccCCCcCCCCEEECccccccCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999998 589999999999998885         3333321  3344433     25777888888774

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=99.87  E-value=2.3e-22  Score=162.28  Aligned_cols=88  Identities=24%  Similarity=0.491  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+....                                .+..++|+++|+++|.||++|
T Consensus         4 ~a~~RL~kE~~~l~~~~~~g~~~~p~~--------------------------------~~~~~~nl~~w~~~I~Gp~~t   51 (157)
T 2gjd_A            4 LCLQRLQEERKKWRKDHPFGFYAKPVK--------------------------------KADGSMDLQKWEAGIPGKEGT   51 (157)
T ss_dssp             HHHHHHHHHHHHHHHCCCTTCEEEEEE--------------------------------CTTSCEEEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEecc--------------------------------ccCCCCcccEEEEEEECCCCC
Confidence            456799999999999877666664100                                000124899999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        52 pyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~   91 (157)
T 2gjd_A           52 NWAGGVYPITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGT   91 (157)
T ss_dssp             TTTTBEEEEEEECCTTTTTSCCEEECCTTCCCTTBCTTSB
T ss_pred             CcCCeEEEEEEEcCCCCCCCCCeeeccCCCccCCCCCCCc
Confidence            9999999999999999999999999999999999997653

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=99.87  E-value=5.4e-22  Score=162.30  Aligned_cols=129  Identities=18%  Similarity=0.273  Sum_probs=102.9

Q ss_pred             CCChHHHHHHHHHHHHhhh-C-C------CC---CeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCC
Q psy621            4 VPTSSALRALSMEYKSLQE-E-P------VE---GFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWD   70 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~-~-~------~~---g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~   70 (289)
                      +|++.+.+||+|||++|++ + +      +.   ++.+.+++++|+++|++.|.||++|+|+||.|++.+  +++||++|
T Consensus         2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P   81 (172)
T 2y9m_A            2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP   81 (172)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence            4778999999999999998 5 3      33   456666578899999999999999999999886655  89999999


Q ss_pred             cccceec-ccccccee-ccceeeCcccc-CccchHH---------HHHhhh-c-ccccccC-----CC-chhhHHHHhHH
Q psy621           71 VNVQNQI-ENLTKTFE-ASSFISAPLYT-ESWLRSF---------VSYVRR-N-QDFLNVT-----ID-TREGFLKTLND  130 (289)
Q Consensus        71 P~v~~~~-~~~~~~~e-~~~~~~~~~~~-~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~-~~~~F~~~l~~  130 (289)
                      |+++|.+ +++|||+. .+|.+|++++. +.|.+++         +++|.. + ++++|.+     .+ +.+.|.+.+++
T Consensus        82 P~v~f~t~~i~HPni~~~~G~iCl~iL~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~f~~~~~~  161 (172)
T 2y9m_A           82 PKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKY  161 (172)
T ss_dssp             CEEEECTTSCCCTTEETTTTEECCGGGSTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHHHHHHHHH
T ss_pred             CEEEEeeCCeecCCCcCCCCEEeccccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999 99999995 78999999998 8998874         333332 1 3444433     25 78889888887


Q ss_pred             hh
Q psy621          131 LW  132 (289)
Q Consensus       131 ~~  132 (289)
                      +-
T Consensus       162 ~~  163 (172)
T 2y9m_A          162 FL  163 (172)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=99.87  E-value=2.7e-22  Score=168.27  Aligned_cols=127  Identities=20%  Similarity=0.302  Sum_probs=104.1

Q ss_pred             CChHHHHHHHHHHHHhhhC---CCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc
Q psy621            5 PTSSALRALSMEYKSLQEE---PVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN   79 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~---~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~   79 (289)
                      |++.|.+||+|||++|+++   ++.|+.+.+ .++|+++|++.|.||++|+|+||.|++.|  +.+||++||+++|.+++
T Consensus         2 Ms~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i   80 (201)
T 3k9o_A            2 MANIAVQRIKREFKEVLKSEETSKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI   80 (201)
T ss_dssp             --CTTHHHHHHHHHHHHTCHHHHTTSEEEEE-CSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCEEEEE-CCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCc
Confidence            5668899999999999987   478999997 56799999999999999999999986665  89999999999999999


Q ss_pred             ccccee-ccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHhh
Q psy621           80 LTKTFE-ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDLW  132 (289)
Q Consensus        80 ~~~~~e-~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~~  132 (289)
                      +|||+. .+|.+|++++.+.|.+++         +.+|...  ++++|..     .++++.|.+.++++-
T Consensus        81 ~HPnv~~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~  150 (201)
T 3k9o_A           81 WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWA  150 (201)
T ss_dssp             CBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ccCCCcCCCCeeeCcccccCCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            999998 489999999999998884         3344321  3344433     257888998888743

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=99.87  E-value=3.1e-22  Score=161.31  Aligned_cols=125  Identities=21%  Similarity=0.302  Sum_probs=102.0

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccce
Q psy621            7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTF   84 (289)
Q Consensus         7 ~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~   84 (289)
                      +.+.+||+||+++|++++++|+.+...+++|+++|++.|. |++|+|+||.|++.+  +++||++||+++|.++++|||+
T Consensus         3 m~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV   81 (155)
T 1wzv_A            3 HMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNV   81 (155)
T ss_dssp             --CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcC
Confidence            4578999999999999999999994347889999999999 999999999886655  8999999999999999999999


Q ss_pred             eccceeeCccc-cCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhh
Q psy621           85 EASSFISAPLY-TESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLW  132 (289)
Q Consensus        85 e~~~~~~~~~~-~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~  132 (289)
                      ..+|.+|++++ .+.|.+++         +.+|.. + ++++|.++     ++.+.|.+.++++-
T Consensus        82 ~~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~  146 (155)
T 1wzv_A           82 DENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT  146 (155)
T ss_dssp             CTTCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCeEeecCCCccCCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999 89998874         333332 1 33444332     57777888877743

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=99.87  E-value=4.8e-22  Score=166.78  Aligned_cols=83  Identities=36%  Similarity=0.749  Sum_probs=73.3

Q ss_pred             hHHHHHHHHHHHHHHh---CCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCC
Q psy621          168 NMEKEMVKELRRIAHE---SSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGP  244 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~---~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp  244 (289)
                      ...+|+++|++++.++   .+.++.+.                                     +.++|+++|+++|.||
T Consensus         5 ~a~~Rl~kEl~~l~~~~~~~~~~i~~~-------------------------------------~~~~nl~~w~~~i~Gp   47 (201)
T 3k9o_A            5 IAVQRIKREFKEVLKSEETSKNQIKVD-------------------------------------LVDENFTELRGEIAGP   47 (201)
T ss_dssp             TTHHHHHHHHHHHHTCHHHHTTSEEEE-------------------------------------ECSTTSSEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEEE-------------------------------------ECCCCccEEEEEEECC
Confidence            3568999999999875   24566664                                     5678999999999999


Q ss_pred             CCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          245 PDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       245 ~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        48 ~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~~G   90 (201)
T 3k9o_A           48 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG   90 (201)
T ss_dssp             TTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTC
T ss_pred             CCCCCCCCEEEEEEECCCcCCCCCCccccccCcccCCCcCCCC
Confidence            9999999999999999999999999999999999999997555

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=99.87  E-value=3.8e-22  Score=161.66  Aligned_cols=87  Identities=31%  Similarity=0.531  Sum_probs=73.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+....                                ....++|+++|+++|.||++|
T Consensus         7 ~a~~RL~kE~~~l~~~~~~g~~~~p~~--------------------------------~~~~~~nl~~w~~~i~Gp~~t   54 (161)
T 2grr_A            7 IALSRLAQERKAWRKDHPFGFVAVPTK--------------------------------NPDGTMNLMNWECAIPGKKGT   54 (161)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEE--------------------------------CTTSCEEEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEecc--------------------------------ccCCCCCccEEEEEEECCCCC
Confidence            456899999999999876666654100                                001246899999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        55 pyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   93 (161)
T 2grr_A           55 PWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSG   93 (161)
T ss_dssp             TTTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTS
T ss_pred             CccCCEEEEEEEcCcccCCCCCEEEEecCcccCCCCCCC
Confidence            999999999999999999999999999999999999765

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=99.87  E-value=6.1e-22  Score=161.50  Aligned_cols=127  Identities=20%  Similarity=0.262  Sum_probs=104.3

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      ..++.+.+||+|||++|++++++|+.+.+.+++|++.|.+.| ||++|+|+||.|++.|  +++||++||+++|.++++|
T Consensus        10 ~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   88 (167)
T 3fn1_B           10 RRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH   88 (167)
T ss_dssp             CCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred             cchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence            445679999999999999999999999976778999999988 8999999999886655  8999999999999999999


Q ss_pred             cceeccceeeCccccC------ccchHH---------HHHhhh--c-ccccccCC-----CchhhHHHHhHHh
Q psy621           82 KTFEASSFISAPLYTE------SWLRSF---------VSYVRR--N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~~------~Wl~~y---------~~~l~~--~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      ||+..+|.+|++++..      .|.+++         +.+|..  + ++++|.++     ++.+.|.+.++++
T Consensus        89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~  161 (167)
T 3fn1_B           89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDY  161 (167)
T ss_dssp             SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999999865      798873         344432  2 23333322     5777788877763

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=99.87  E-value=6.9e-22  Score=170.25  Aligned_cols=128  Identities=20%  Similarity=0.292  Sum_probs=106.8

Q ss_pred             CCChHHHHHHHHHHHHhhhC---CCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecc
Q psy621            4 VPTSSALRALSMEYKSLQEE---PVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIE   78 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~---~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~   78 (289)
                      .|++.|.+||+|||++|+++   ++.|+.+.+ .++|+++|++.|.||++|+|+||.|.+.|  +++||++||+++|.++
T Consensus        53 ~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p-~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~  131 (253)
T 3e46_A           53 DMANIAVQRIKREFKEVLKSEETSKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK  131 (253)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEE-CSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCCCCEEEEE-CCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence            46788999999999999987   578999997 56799999999999999999999986665  8999999999999999


Q ss_pred             cccccee-ccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHhh
Q psy621           79 NLTKTFE-ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDLW  132 (289)
Q Consensus        79 ~~~~~~e-~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~~  132 (289)
                      ++|||+. .+|.+|++++.+.|.+++         +.+|...  ++++|..     .++++.|.+.++++-
T Consensus       132 i~HPNV~~~~G~ICL~iL~~~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t  202 (253)
T 3e46_A          132 IWHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWA  202 (253)
T ss_dssp             CCBTTBCTTTCBBCCGGGTTCCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CccCCccCCCCeeecccccCCCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHH
Confidence            9999998 489999999999998885         3444321  3444433     267888999888743

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=99.86  E-value=3.9e-22  Score=159.89  Aligned_cols=59  Identities=39%  Similarity=0.859  Sum_probs=55.4

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        23 ~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~~G   81 (152)
T 2onu_A           23 LNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASG   81 (152)
T ss_dssp             EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTTC
T ss_pred             EccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCcCC
Confidence            45689999999999999999999999999999999999999999999999999996544

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=99.86  E-value=1e-21  Score=158.10  Aligned_cols=100  Identities=19%  Similarity=0.273  Sum_probs=89.0

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCC-eEEEecCCCC--ceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEG-FRVKLVNDDN--LFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIE   78 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g-~~~~~~~~~n--~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~   78 (289)
                      .+..++.+||+||+++|++++++| +.+.+.+++|  +++|++.|.||++|+|+||.|++.+  +++||++||+++|.++
T Consensus        21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            345779999999999999999999 7888656665  9999999999999999999986665  8999999999999999


Q ss_pred             cccccee-ccceeeCcccc--CccchHH
Q psy621           79 NLTKTFE-ASSFISAPLYT--ESWLRSF  103 (289)
Q Consensus        79 ~~~~~~e-~~~~~~~~~~~--~~Wl~~y  103 (289)
                      ++|||+. .+|.+|++++.  +.|.+++
T Consensus       101 i~HPNV~~~~G~ICl~iL~~~~~WsP~~  128 (160)
T 2a4d_A          101 INMNGVNSSNGVVDPRAISVLAKWQNSY  128 (160)
T ss_dssp             CCCTTBCTTTCBBCGGGSHHHHTCCTTC
T ss_pred             ceeCCEECCCCEEehhhcCCccCCCccC
Confidence            9999998 68999999876  8898875

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=99.86  E-value=1.1e-22  Score=171.44  Aligned_cols=127  Identities=18%  Similarity=0.339  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      ++.+||+||+++|++++++|+.+.+.+++++++|++.|.||++|+|+||.|++.  ++++||++||+++|.++++|||+.
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            467999999999999999999999766667789999999999999999987655  489999999999999999999999


Q ss_pred             c-cceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHhhcc
Q psy621           86 A-SSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDLWLF  134 (289)
Q Consensus        86 ~-~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~~~~  134 (289)
                      . +|.+|++++.+.|.+++         +++|.. + ++++|..     ..+.+.|.+.++++-..
T Consensus        82 ~~~G~ICL~iL~~~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~  147 (215)
T 1tte_A           82 SVTGAICLDILRNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRL  147 (215)
T ss_dssp             SSSSCCCSSTTTCCSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCCCEEECccCCCCCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            8 99999999999998874         334432 1 3344432     25788899988884433

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.86  E-value=5.9e-22  Score=161.30  Aligned_cols=84  Identities=27%  Similarity=0.472  Sum_probs=71.0

Q ss_pred             hHHHHHHHHHHHHHHhCCCC-eEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCC--cceEEEEEeCC
Q psy621          168 NMEKEMVKELRRIAHESSLN-VSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDN--LFEWEVAIFGP  244 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~-~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~--~~~w~~~i~gp  244 (289)
                      .+.+|+++|++++.++.+.+ +.+.                                    +++++|  +++|+++|.||
T Consensus        35 p~~~RL~kEl~~l~~~~~~g~~~~~------------------------------------~~~~~d~nl~~W~~~I~GP   78 (170)
T 2hlw_A           35 PRNFRLLEELEEGQKGVGDGTVSWG------------------------------------LEDDEDMTLTRWTGMIIGP   78 (170)
T ss_dssp             CHHHHHHHHHHHHHHCCGGGCEEEE------------------------------------ESSTTCSSCCBEEEEECCC
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEE------------------------------------ecCcccccceeeEEEEeCC
Confidence            35689999999998875444 3332                                    134554  99999999999


Q ss_pred             CCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          245 PDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       245 ~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        79 ~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~HPNV~~~~G  121 (170)
T 2hlw_A           79 PRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNG  121 (170)
T ss_dssp             SSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCCCSSBCSSSC
T ss_pred             CCCCcCCcEEEEEEECCCCCCCCCCeeEEecccccCCEeCCCC
Confidence            9999999999999999999999999999999999999995444

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=99.86  E-value=2e-21  Score=157.05  Aligned_cols=124  Identities=17%  Similarity=0.268  Sum_probs=102.3

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      ++.+.+||+||+++|  ++++|+.+...+++|+++|++.| ||++|+|+||.|++.+  +++||++||+++|.++++|||
T Consensus         4 ~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (160)
T 1y8x_A            4 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN   80 (160)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence            567899999999999  57899999844788999999988 9999999999886655  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHhh
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDLW  132 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~~  132 (289)
                      +..+|.+|++++.+.|.+++         +++|.. + ++++|..     .++++.|.+.+++..
T Consensus        81 v~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v  145 (160)
T 1y8x_A           81 IDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSM  145 (160)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CCCCCeEEcccchhhccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence            99999999999999998874         333332 1 3344433     268888999888844

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=99.86  E-value=1.1e-21  Score=157.99  Aligned_cols=81  Identities=31%  Similarity=0.657  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      ..+|+++|++++.++.+.++.+..                                    ++++|+++|+++|. |++||
T Consensus         5 ~~~RL~kEl~~l~~~~~~~i~~~~------------------------------------~~~~~l~~w~~~I~-P~~tp   47 (155)
T 1wzv_A            5 ASMRVVKELEDLQKKPPPYLRNLS------------------------------------SDDANVLVWHALLL-PDQPP   47 (155)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEE------------------------------------ECSSCTTEEEEEEC-CCSTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEe------------------------------------cCCCchheEEEEEc-CCCCC
Confidence            457999999999988766666521                                    57889999999999 99999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        48 yegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G   85 (155)
T 1wzv_A           48 YHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENG   85 (155)
T ss_dssp             GGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             CCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCCCCC
Confidence            99999999999999999999999999999999999854

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=99.86  E-value=1.9e-21  Score=158.55  Aligned_cols=85  Identities=28%  Similarity=0.565  Sum_probs=75.4

Q ss_pred             CCchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCC
Q psy621          165 TDGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGP  244 (289)
Q Consensus       165 ~~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp  244 (289)
                      ......+|+++|++++.++.+.++.+.                                    +++++|++.|+++| ||
T Consensus        11 ~~s~~~~RL~kEl~~l~~~~~~gi~~~------------------------------------~~~~~~l~~w~~~i-gp   53 (167)
T 3fn1_B           11 RVSVRDKLLVKEVAELEANLPCTCKVH------------------------------------FPDPNKLHCFQLTV-TP   53 (167)
T ss_dssp             CCCHHHHHHHHHHHHHGGGSCTTEEEE------------------------------------CSSSSCTTEEEEEE-CC
T ss_pred             chhHHHHHHHHHHHHHHhCCCCCEEEE------------------------------------eCCCCcceeEEEEE-CC
Confidence            345667899999999999877777664                                    14678999999998 99


Q ss_pred             CCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          245 PDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       245 ~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        54 ~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G   95 (167)
T 3fn1_B           54 DEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETG   95 (167)
T ss_dssp             SSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCCSSBCTTC
T ss_pred             CCCccCCCEEEEEEECCCCCCCCCCeeEecCCcccCCCCCCC
Confidence            999999999999999999999999999999999999999654

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=99.85  E-value=2.4e-21  Score=158.43  Aligned_cols=58  Identities=36%  Similarity=0.753  Sum_probs=54.7

Q ss_pred             CCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec-CCcCCCCCCCCC
Q psy621          230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLT-KVWHPNVYEGTA  287 (289)
Q Consensus       230 ~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t-~i~hpnv~~~~~  287 (289)
                      +++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.| +||||||+..+|
T Consensus        43 ~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~~i~HPni~~~~G  101 (172)
T 2y9m_A           43 DETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATG  101 (172)
T ss_dssp             STTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECTTSCCCTTEETTTT
T ss_pred             CCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCCCEEEEeeCCeecCCCcCCCC
Confidence            7889999999999999999999999999999999999999999999 999999964444

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=99.85  E-value=2.3e-21  Score=166.99  Aligned_cols=84  Identities=36%  Similarity=0.742  Sum_probs=74.3

Q ss_pred             chHHHHHHHHHHHHHHh---CCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeC
Q psy621          167 GNMEKEMVKELRRIAHE---SSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFG  243 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~---~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~g  243 (289)
                      ....+|+++|++++.++   .+.++.+.                                     +.++|+++|+++|.|
T Consensus        56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~-------------------------------------p~~dnl~~W~~~I~G   98 (253)
T 3e46_A           56 NIAVQRIKREFKEVLKSEETSKNQIKVD-------------------------------------LVDENFTELRGEIAG   98 (253)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHTTSEEEE-------------------------------------ECSTTSSEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCEEEE-------------------------------------ECCCcccEEEEEEEC
Confidence            45678999999999875   24566664                                     567899999999999


Q ss_pred             CCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          244 PPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       244 p~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        99 P~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV~~~~G  142 (253)
T 3e46_A           99 PPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG  142 (253)
T ss_dssp             CTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTC
T ss_pred             CCCCCcCCCEEEEEEECCCCCCCCCCeeeecCCCccCCccCCCC
Confidence            99999999999999999999999999999999999999997555

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=99.85  E-value=2.6e-21  Score=159.10  Aligned_cols=127  Identities=17%  Similarity=0.256  Sum_probs=103.7

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      ..++.+.+||+||+++|  ++++|+.+.+.+++|+++|++.| ||++|+|+||.|.+.+  +++||++||+++|.++++|
T Consensus        22 ~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~H   98 (180)
T 2nvu_C           22 KKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   98 (180)
T ss_dssp             CSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCcc
Confidence            45677999999999999  57899999844788999999988 9999999999886655  8999999999999999999


Q ss_pred             cceeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhhc
Q psy621           82 KTFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLWL  133 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~~  133 (289)
                      ||+..+|.+|++++.+.|.+++         +++|.. + ++++|..+     ++.+.|.+.+++...
T Consensus        99 PNV~~~G~iCl~iL~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~  166 (180)
T 2nvu_C           99 PNIDLEGNVALNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR  166 (180)
T ss_dssp             TTBCTTSBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEcccccccCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHh
Confidence            9999999999999999998874         333332 1 33444332     577888888888543

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.85  E-value=1.4e-21  Score=159.27  Aligned_cols=58  Identities=34%  Similarity=0.769  Sum_probs=55.6

Q ss_pred             cCCCCcceEEEEEeCCCCCCCC--CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQ--GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~--~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ++++|+++|+++|.||++|||+  ||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        44 ~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G  103 (167)
T 4ds2_A           44 VDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEG  103 (167)
T ss_dssp             EEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTSCCEEEESSCCCCSSCCTTS
T ss_pred             eCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCCCCEEEEeCCcccccCCCCC
Confidence            6788999999999999999999  999999999999999999999999999999999655

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=99.85  E-value=5.1e-22  Score=167.36  Aligned_cols=83  Identities=30%  Similarity=0.729  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      ..+|+++|++++.++.+.++.+.                                    |.+++++++|+++|.||++||
T Consensus         3 a~~RL~kEl~~l~~~~~~gi~~~------------------------------------p~~~~~l~~w~~~I~GP~~Tp   46 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAHITLE------------------------------------FVSESDIHHLKGTFLGPPGTP   46 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTTCEEC------------------------------------CCSSSSCCEEEEECCEEEEET
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEE------------------------------------ECCCccccccEEEEeCCCCCC
Confidence            45799999999998876666664                                    134446779999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |+||+|+++|.||++||++||+|+|.|+||||||++.+|
T Consensus        47 YegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~~~~G   85 (215)
T 1tte_A           47 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTG   85 (215)
T ss_dssp             TEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSCSSSS
T ss_pred             cCCCEEEEEEeCCccCCCCCCcccccCCCccCcCcCCCC
Confidence            999999999999999999999999999999999998444

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=99.85  E-value=1.1e-21  Score=157.91  Aligned_cols=124  Identities=21%  Similarity=0.382  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      +|.+||+||+++|++++++|+.+.+.+++|+++|++.|. |++|+|+||.|.+.+  +++||++||+++|.++++|||+.
T Consensus         2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   80 (154)
T 1c4z_D            2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   80 (154)
T ss_dssp             --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence            467999999999999999999877667889999999998 999999999886655  89999999999999999999999


Q ss_pred             ccceeeCcccc-CccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHhh
Q psy621           86 ASSFISAPLYT-ESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDLW  132 (289)
Q Consensus        86 ~~~~~~~~~~~-~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~~  132 (289)
                      .+|.+|++++. +.|.+++         +++|.. + ++++|.+     .++.+.|.+.++++-
T Consensus        81 ~~G~iCl~iL~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~  144 (154)
T 1c4z_D           81 EKGQVCLPVISAENWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFT  144 (154)
T ss_dssp             TTCBBCCTTTSSSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHH
T ss_pred             CCCEEECCCCCCCCCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999999985 8898874         333332 1 3333332     256677888777743

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=99.84  E-value=3.4e-21  Score=155.71  Aligned_cols=58  Identities=29%  Similarity=0.601  Sum_probs=54.8

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        29 ~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G~   86 (160)
T 1y8x_A           29 SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGN   86 (160)
T ss_dssp             SSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCB
T ss_pred             ccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCcCCCCCe
Confidence            5688999999998 999999999999999999999999999999999999999998753

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=99.84  E-value=3.8e-21  Score=158.12  Aligned_cols=58  Identities=29%  Similarity=0.601  Sum_probs=54.9

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ++++|+++|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        49 p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNV~~~G~  106 (180)
T 2nvu_C           49 SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGN  106 (180)
T ss_dssp             SSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTSB
T ss_pred             cccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCccCCCCCCCc
Confidence            5688999999998 999999999999999999999999999999999999999998753

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=99.84  E-value=4.2e-21  Score=151.59  Aligned_cols=97  Identities=15%  Similarity=0.215  Sum_probs=82.4

Q ss_pred             ChHHHHHHHHHHHHhhhC-CCCCeEEEecCCC--CceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccc
Q psy621            6 TSSALRALSMEYKSLQEE-PVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENL   80 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~-~~~g~~~~~~~~~--n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~   80 (289)
                      ..++.+||+||+++|+++ +++|+.+.+.+++  |+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++
T Consensus         4 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   83 (138)
T 1jat_B            4 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN   83 (138)
T ss_dssp             CCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             hHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEcccc
Confidence            346779999999999998 8999999975544  59999999999999999999986665  899999999999999999


Q ss_pred             ccceecc-cee--eCccccCccchHH
Q psy621           81 TKTFEAS-SFI--SAPLYTESWLRSF  103 (289)
Q Consensus        81 ~~~~e~~-~~~--~~~~~~~~Wl~~y  103 (289)
                      |||+... |.+  |++++. .|.+++
T Consensus        84 HPnv~~~~G~i~~cL~~l~-~W~p~~  108 (138)
T 1jat_B           84 LPCVNPTTGEVQTDFHTLR-DWKRAY  108 (138)
T ss_dssp             CTTBCTTTCBBCTTSHHHH-TCCTTC
T ss_pred             cCCEeCCCCEEeeecccCC-CCCCcC
Confidence            9999986 898  888754 788775

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=99.84  E-value=5.7e-21  Score=153.45  Aligned_cols=99  Identities=19%  Similarity=0.322  Sum_probs=87.5

Q ss_pred             CCChHHHHHHHHHHHHhhhC-CCCCeEEEecCCC--CceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecc
Q psy621            4 VPTSSALRALSMEYKSLQEE-PVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIE   78 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~-~~~g~~~~~~~~~--n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~   78 (289)
                      ..+.++.+||+||+++|+++ +++|+.+.+.+++  |+++|.+.|.||++|+|+||.|.+.+  +++||++||+++|.++
T Consensus        17 ~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~   96 (156)
T 2q0v_A           17 QGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTK   96 (156)
T ss_dssp             SSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             cccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcc
Confidence            34567889999999999998 8899999975543  59999999999999999999986655  8999999999999999


Q ss_pred             ccccceecccee---eCccccCccchHH
Q psy621           79 NLTKTFEASSFI---SAPLYTESWLRSF  103 (289)
Q Consensus        79 ~~~~~~e~~~~~---~~~~~~~~Wl~~y  103 (289)
                      ++|||+..+|.+   |++++. .|.+++
T Consensus        97 i~HPNV~~~G~icisCL~iL~-~WsP~~  123 (156)
T 2q0v_A           97 IEMSCVDNCGRVIKNNLHILK-NWNRNY  123 (156)
T ss_dssp             CCCTTBCTTSBBCGGGSHHHH-TCCTTC
T ss_pred             cccCCCccCCeEehhhccccc-CCCCcC
Confidence            999999999999   888875 498875

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=99.84  E-value=6.6e-21  Score=155.46  Aligned_cols=57  Identities=37%  Similarity=0.742  Sum_probs=54.1

Q ss_pred             CCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       231 ~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        34 ~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~~~G   90 (171)
T 1yf9_A           34 SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSG   90 (171)
T ss_dssp             CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTC
T ss_pred             CCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcccCC
Confidence            679999999999999999999999999999999999999999999999999996444

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=99.83  E-value=8.8e-21  Score=155.39  Aligned_cols=56  Identities=38%  Similarity=0.861  Sum_probs=53.0

Q ss_pred             CCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          232 DNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       232 ~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+..+|
T Consensus        48 ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~~~G  103 (179)
T 2z5d_A           48 GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASG  103 (179)
T ss_dssp             EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTC
T ss_pred             CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCCCCC
Confidence            47899999999999999999999999999999999999999999999999998444

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=99.83  E-value=3.6e-21  Score=154.89  Aligned_cols=79  Identities=35%  Similarity=0.741  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      +|+++|++++.++.+.++.+.                                    +++++|+++|+++|. |++|||+
T Consensus         5 ~RL~kEl~~l~~~~~~~~~~~------------------------------------~~~~~~l~~w~~~i~-P~~tpye   47 (154)
T 1c4z_D            5 RRLMKELEEIRKCGMKNFRNI------------------------------------QVDEANLLTWQGLIV-PDNPPYD   47 (154)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEE------------------------------------CSSCSSSSEEEEEEC-CCSSSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEe------------------------------------eCCCCchheEEEEEe-CCCCCcc
Confidence            578899998887755554422                                    257789999999997 9999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        48 gg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   83 (154)
T 1c4z_D           48 KGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKG   83 (154)
T ss_dssp             SCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTC
T ss_pred             CCeEEEEEEeCCCCCCCCCEEEEeCCCccccCCCCC
Confidence            999999999999999999999999999999999865

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.83  E-value=1.4e-20  Score=173.33  Aligned_cols=127  Identities=24%  Similarity=0.382  Sum_probs=106.7

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      ++.|.|||+||+++|++++++|+.+.| .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++|||
T Consensus         1 ~s~a~~RL~kEl~~l~~~~~~~~~~~p-~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   79 (399)
T 4ddg_A            1 GAMALKRIHKELNDLARDPPAQCSAGP-VGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPN   79 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCSSEEEEE-ETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCEEEEE-cCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccc
Confidence            357899999999999999999999997 56799999999999999999999986665  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhhc
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLWL  133 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~~  133 (289)
                      +..+|.+|++++.+.|.+++         +++|.. + ++++|..+     ++++.|.+.++++-.
T Consensus        80 v~~~G~iCl~il~~~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~  145 (399)
T 4ddg_A           80 INSNGSISLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ  145 (399)
T ss_dssp             BCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cCCCCeEeCcccccCCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHH
Confidence            99999999999999998885         334432 1 34444332     577888888877543

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=99.83  E-value=1.8e-21  Score=158.57  Aligned_cols=100  Identities=15%  Similarity=0.276  Sum_probs=90.3

Q ss_pred             CCCChHHHHHHHHHHHHhhhCC------------CCCeEEEecCCCCceEEEEEEeCCCCCCcc--CcEEEEEE--cCCC
Q psy621            3 QVPTSSALRALSMEYKSLQEEP------------VEGFRVKLVNDDNLFEWEVAIFGPPDTLYQ--GGYFKAII--EGEL   66 (289)
Q Consensus         3 ~~~~~~~~~Rl~kE~~~l~~~~------------~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~--g~~~~v~v--~~~y   66 (289)
                      +.|++.+.|||+||+++|++++            +.|+.+.+ +++|+++|++.|.||++|+|+  ||.|++.+  +++|
T Consensus         3 ~~Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~Y   81 (167)
T 4ds2_A            3 GSMKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSV-DTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDY   81 (167)
T ss_dssp             --CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEE-EESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTT
T ss_pred             ccccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEe-CCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCC
Confidence            3577789999999999999987            78899885 778999999999999999999  89886655  8999


Q ss_pred             CCCCcccceeccccccceeccceeeCccccCccchHH
Q psy621           67 PHWDVNVQNQIENLTKTFEASSFISAPLYTESWLRSF  103 (289)
Q Consensus        67 p~~~P~v~~~~~~~~~~~e~~~~~~~~~~~~~Wl~~y  103 (289)
                      |++||+++|.++++|||+..+|.+|++++.+.|.+++
T Consensus        82 P~~pP~v~f~t~i~HPnv~~~G~iCl~il~~~W~p~~  118 (167)
T 4ds2_A           82 PHEPPTVRFVTPVYSPLVTGEGGICDRMVNDFWTPDQ  118 (167)
T ss_dssp             TTSCCEEEESSCCCCSSCCTTSCCCTHHHHTTCCTTS
T ss_pred             CCCCCEEEEeCCcccccCCCCCEEEcccCcCCCCCCC
Confidence            9999999999999999999999999999999999885

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=99.83  E-value=6.3e-21  Score=155.23  Aligned_cols=98  Identities=18%  Similarity=0.276  Sum_probs=86.5

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCC-eEEEecCCCC--ceEEEEEEeCCCCCCccCcEEEE--EEcCCCCCCCcccceecccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEG-FRVKLVNDDN--LFEWEVAIFGPPDTLYQGGYFKA--IIEGELPHWDVNVQNQIENL   80 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g-~~~~~~~~~n--~~~w~~~i~gp~~t~y~g~~~~v--~v~~~yp~~~P~v~~~~~~~   80 (289)
                      ..++.+||+|||++|++++++| +.+.+.+++|  +++|++.|.||++|+|+||.|++  .++++||++||+++|.++++
T Consensus        33 ~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           33 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred             cCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence            3568899999999999999999 6777656665  99999999999999999998755  45899999999999999999


Q ss_pred             cccee-ccceeeCcccc--CccchHH
Q psy621           81 TKTFE-ASSFISAPLYT--ESWLRSF  103 (289)
Q Consensus        81 ~~~~e-~~~~~~~~~~~--~~Wl~~y  103 (289)
                      |||+. .+|.+|++++.  +.|.+++
T Consensus       113 HPNV~~~~G~ICl~iL~~~~~WsP~~  138 (170)
T 2hlw_A          113 MNGVNSSNGVVDPRAISVLAKWQNSY  138 (170)
T ss_dssp             CSSBCSSSCBBCTTTCHHHHTCCSSC
T ss_pred             cCCEeCCCCEEEhhhcCCCCCCCccC
Confidence            99998 79999999876  7898774

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.83  E-value=1.3e-20  Score=155.94  Aligned_cols=96  Identities=20%  Similarity=0.460  Sum_probs=79.3

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      .++.+.+||+||+++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.|  +++||++||+|+|.++  |+
T Consensus        11 ~~~~a~~RL~kEl~~l~~~~~~~i~~~p-~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~   87 (187)
T 2f4w_A           11 APTTATQRLKQDYLRIKKDPVPYICAEP-LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG   87 (187)
T ss_dssp             ---CHHHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred             CccHHHHHHHHHHHHHHhCCCCCEEEEE-cCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence            3455889999999999999999999986 56799999999999999999999986655  8999999999999998  88


Q ss_pred             ceeccceeeCccc---cCccchHH
Q psy621           83 TFEASSFISAPLY---TESWLRSF  103 (289)
Q Consensus        83 ~~e~~~~~~~~~~---~~~Wl~~y  103 (289)
                      +|+.+|.+|++++   .+.|.+++
T Consensus        88 ~~~~~G~ICL~iL~~~~~~W~P~~  111 (187)
T 2f4w_A           88 RFKCNTRLCLSITDFHPDTWNPAW  111 (187)
T ss_dssp             SBCTTSCBC----------CCTTC
T ss_pred             eeccCCeEeeeccccCccCCCCcC
Confidence            9999999999998   58898875

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.82  E-value=3.7e-20  Score=153.52  Aligned_cols=126  Identities=15%  Similarity=0.159  Sum_probs=104.8

Q ss_pred             CCChHHHHHHHHHHHHhhhCCCCCeEEEe---cCCCCce---EEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccce
Q psy621            4 VPTSSALRALSMEYKSLQEEPVEGFRVKL---VNDDNLF---EWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQN   75 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~---~~~~n~~---~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~   75 (289)
                      ..+++|.+||+|||++|+  +++|+.+..   .+++|++   +|++.|. |++|+|+||.|++.|  +++||++||+++|
T Consensus        25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f  101 (190)
T 3o2u_A           25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC  101 (190)
T ss_dssp             CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred             CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence            456789999999999998  778999983   4788999   9999997 788999999886655  8999999999999


Q ss_pred             eccccccceeccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhh
Q psy621           76 QIENLTKTFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLW  132 (289)
Q Consensus        76 ~~~~~~~~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~  132 (289)
                      .++++|||+..+|.+|++++.+.|.+++         +.+|.. + ++++|.++     ++.+.|.+.++++.
T Consensus       102 ~t~i~HPnV~~~G~iCl~iL~~~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~  174 (190)
T 3o2u_A          102 LKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTM  174 (190)
T ss_dssp             CSCCCCTTBCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ecCcccCCCCCCCeEechhccCCCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHH
Confidence            9999999999999999999999998874         333432 1 34444432     68899999999854

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.82  E-value=2.8e-20  Score=171.37  Aligned_cols=82  Identities=37%  Similarity=0.770  Sum_probs=75.5

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|
T Consensus         3 ~a~~RL~kEl~~l~~~~~~~~~~~-------------------------------------p~~~nl~~w~~~i~Gp~~t   45 (399)
T 4ddg_A            3 MALKRIHKELNDLARDPPAQCSAG-------------------------------------PVGDDMFHWQATIMGPNDS   45 (399)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEE-------------------------------------EETTEEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCcceEEEEEEECCCCC
Confidence            356899999999999877777765                                     5678999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        46 pyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G   84 (399)
T 4ddg_A           46 PYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG   84 (399)
T ss_dssp             SSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBCTTC
T ss_pred             CCCCCEEEEEEECCcccCCCCcEEEeeccccccccCCCC
Confidence            999999999999999999999999999999999999855

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=99.82  E-value=4e-21  Score=154.04  Aligned_cols=121  Identities=18%  Similarity=0.369  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      +|.+||+||+++|+++   |+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++|||+.
T Consensus         2 sa~~Rl~kEl~~l~~~---~~~v~~-~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~   77 (152)
T 2onu_A            2 TSLTRKQCDFTKLIMA---GYDLEL-NNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVD   77 (152)
T ss_dssp             -CCCHHHHTHHHHHHH---TCCEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             hHHHHHHHHHHhcCcC---CCEEEE-ccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCc
Confidence            4569999999999884   788886 46799999999999999999999986655  89999999999999999999998


Q ss_pred             -ccceeeCccccCccchHH----------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhh
Q psy621           86 -ASSFISAPLYTESWLRSF----------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLW  132 (289)
Q Consensus        86 -~~~~~~~~~~~~~Wl~~y----------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~  132 (289)
                       .+|.+|++++.+.|.+++          +.+|.. + ++++|.++     ++++.|.+.++++-
T Consensus        78 ~~~G~iCl~il~~~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~  142 (152)
T 2onu_A           78 EASGSVCLDVINQTWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYV  142 (152)
T ss_dssp             TTTCBBCHHHHHHHCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CcCCeEecccccccCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence             589999999988998863          233332 1 34444332     57778888887743

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=99.81  E-value=1.5e-20  Score=154.05  Aligned_cols=120  Identities=18%  Similarity=0.330  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      ++.+||+|||++|++   +|+.+.+.  +|+++|.+.|.||++|+|+||.|.+.+  +++||++||+++|.++++|||+.
T Consensus        25 ~a~~RL~kEl~~l~~---~g~~v~~~--ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~   99 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIE---SKHEVTIL--GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNID   99 (179)
T ss_dssp             HHHHHHHHHHHHHHH---SSSCEEEE--EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             HHHHHHHHHHHhcCc---CCCEEEEC--CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCC
Confidence            589999999999985   57888864  478999999999999999999986655  89999999999999999999999


Q ss_pred             c-cceeeCccccCccchHH----------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhh
Q psy621           86 A-SSFISAPLYTESWLRSF----------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLW  132 (289)
Q Consensus        86 ~-~~~~~~~~~~~~Wl~~y----------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~  132 (289)
                      . +|.+|++++.+.|.+++          +.+|.. + ++++|..+     ++++.|.+.++++-
T Consensus       100 ~~~G~ICL~iL~~~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~  164 (179)
T 2z5d_A          100 EASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYI  164 (179)
T ss_dssp             TTTCBBCHHHHHHHCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCeEeccccccCCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence            8 99999999988998774          223322 1 33444332     57778888887743

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.81  E-value=5.9e-20  Score=162.52  Aligned_cols=88  Identities=28%  Similarity=0.491  Sum_probs=74.2

Q ss_pred             CchHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCC
Q psy621          166 DGNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPP  245 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~  245 (289)
                      +....+|+++|++.+.++.+.++...                                 +++.++++|++.|+++|.||+
T Consensus        74 s~~~~kRL~kEl~~L~k~~p~g~~~~---------------------------------i~v~~~ednl~~w~~~I~GP~  120 (323)
T 3ceg_A           74 SAARARRLAQEAVTLSTSLPLSSSSS---------------------------------VFVRCDEERLDIMKVLITGPA  120 (323)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCCSSCC---------------------------------EEEEEESSCTTEEEEEEEBCT
T ss_pred             CHHHHHHHHHHHHHHHhCCCCCcccc---------------------------------eeecccCCCccccEEEEeCCC
Confidence            45677899999999998865432110                                 111257889999999999999


Q ss_pred             CCCCCCCEEEEEEEcCCCCCCCCCeEEEecC-----CcCCCCCCCC
Q psy621          246 DTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK-----VWHPNVYEGT  286 (289)
Q Consensus       246 ~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~-----i~hpnv~~~~  286 (289)
                      +|||+||+|+++|.||++||++||+|+|.|+     ||||||+.+|
T Consensus       121 ~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~~g~~~ifHPNV~~~G  166 (323)
T 3ceg_A          121 DTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDG  166 (323)
T ss_dssp             TSTTBTCEEEEEEECCTTTTTSCCEEEECCSTTTTCCCBTTBCTTC
T ss_pred             CCCcCCCEEEEEEeCCCCCCCCCCeEEEeccCCCcccccCCCCcCC
Confidence            9999999999999999999999999999999     9999999765

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=99.81  E-value=1.5e-20  Score=153.30  Aligned_cols=120  Identities=22%  Similarity=0.295  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      ++.+||++|+++|++++. ++  .  .++|+++|++.|.||++|+|+||.|++.|  +++||++||+|+|.++++|||+.
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v--~--~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~   86 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV--Y--PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVD   86 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE--E--ECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBC
T ss_pred             cHHHHHHHHHHHHHhCCC-CC--C--CCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCc
Confidence            678999999999999884 43  2  36799999999999999999999986655  89999999999999999999999


Q ss_pred             -ccceeeCccccCccchHH----------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhh
Q psy621           86 -ASSFISAPLYTESWLRSF----------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLW  132 (289)
Q Consensus        86 -~~~~~~~~~~~~~Wl~~y----------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~  132 (289)
                       .+|.+|++++.+.|.+++          +.+|.. + ++++|.++     ++.+.|.+.++++-
T Consensus        87 ~~~G~iCl~iL~~~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~  151 (171)
T 1yf9_A           87 ERSGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHV  151 (171)
T ss_dssp             TTTCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ccCCeEeccccccCCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence             599999999988998863          234432 1 33444322     57777888877744

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=99.81  E-value=1.3e-19  Score=160.24  Aligned_cols=100  Identities=19%  Similarity=0.249  Sum_probs=89.0

Q ss_pred             CCCChHHHHHHHHHHHHhhhCCCCCe----EEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCccccee
Q psy621            3 QVPTSSALRALSMEYKSLQEEPVEGF----RVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQ   76 (289)
Q Consensus         3 ~~~~~~~~~Rl~kE~~~l~~~~~~g~----~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~   76 (289)
                      +.+++.+.+||+||+++|++++++|+    .+.+ +++|++.|++.|.||++|+|+||.|.+.|  +.+||++||+|+|.
T Consensus        71 ~~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~-~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~  149 (323)
T 3ceg_A           71 DANSAARARRLAQEAVTLSTSLPLSSSSSVFVRC-DEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLE  149 (323)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEE-ESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEEC
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCcccceeecc-cCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEe
Confidence            35788999999999999999988754    4554 67899999999999999999999986655  89999999999999


Q ss_pred             cc-----ccccceeccceeeCcccc-------CccchHH
Q psy621           77 IE-----NLTKTFEASSFISAPLYT-------ESWLRSF  103 (289)
Q Consensus        77 ~~-----~~~~~~e~~~~~~~~~~~-------~~Wl~~y  103 (289)
                      ++     ++|||+..+|.+|++++.       +.|.+++
T Consensus       150 T~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~  188 (323)
T 3ceg_A          150 TTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQT  188 (323)
T ss_dssp             CSTTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTT
T ss_pred             ccCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCc
Confidence            98     999999999999999986       6899876

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.80  E-value=1.4e-19  Score=149.58  Aligned_cols=81  Identities=25%  Similarity=0.559  Sum_probs=72.3

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ....+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++
T Consensus        13 ~~a~~RL~kEl~~l~~~~~~~i~~~-------------------------------------p~~~nl~~W~~~I~GP~~   55 (187)
T 2f4w_A           13 TTATQRLKQDYLRIKKDPVPYICAE-------------------------------------PLPSNILEWHYVVRGPEM   55 (187)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTT
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCccceeEEEEeCCCC
Confidence            3456899999999998877676664                                     567899999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |||+||+|+++|.||++||++||+|+|.|+  |||++.+|
T Consensus        56 TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~~~~~~G   93 (187)
T 2f4w_A           56 TPYEGGYYHGKLIFPREFPFKPPSIYMITP--NGRFKCNT   93 (187)
T ss_dssp             STTTTCEEEEEEECCTTTTSSCCEEEECSC--CSSBCTTS
T ss_pred             CCCCCCEEEEEEEcCCCCCCCCCcccccCC--CceeccCC
Confidence            999999999999999999999999999999  89998765

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.80  E-value=4.5e-20  Score=152.44  Aligned_cols=99  Identities=18%  Similarity=0.312  Sum_probs=88.4

Q ss_pred             CCChHHHHHHHHHHHHhhhCC---CCCeEEEecCCCCceEEEEEEeCC-CCCCccC-----------cEEEEE--EcCCC
Q psy621            4 VPTSSALRALSMEYKSLQEEP---VEGFRVKLVNDDNLFEWEVAIFGP-PDTLYQG-----------GYFKAI--IEGEL   66 (289)
Q Consensus         4 ~~~~~~~~Rl~kE~~~l~~~~---~~g~~~~~~~~~n~~~w~~~i~gp-~~t~y~g-----------~~~~v~--v~~~y   66 (289)
                      +|+.++.+||+|||++|++++   +.|+.+.+ .++|+++|.+.|.|| ++|+|+|           |.|.+.  ++++|
T Consensus        23 ~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p-~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~Y  101 (186)
T 1zuo_A           23 SGSVQASDRLMKELRDIYRSQSYKTGIYSVEL-INDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF  101 (186)
T ss_dssp             -CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEE-ETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTT
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCCCcEEEEE-cCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCC
Confidence            678889999999999999998   68899987 557999999999998 8999997           777554  58999


Q ss_pred             CCCCcccceecccccc-ceeccceeeCcccc-CccchHH
Q psy621           67 PHWDVNVQNQIENLTK-TFEASSFISAPLYT-ESWLRSF  103 (289)
Q Consensus        67 p~~~P~v~~~~~~~~~-~~e~~~~~~~~~~~-~~Wl~~y  103 (289)
                      |++||+|+|.++++|| ++..+|.+|++++. +.|.++|
T Consensus       102 P~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~~WsP~~  140 (186)
T 1zuo_A          102 PFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAY  140 (186)
T ss_dssp             TSSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTS
T ss_pred             CCCCCeEEEeCCccCCCccCCCCcEEeccCCCCCCCCcC
Confidence            9999999999999999 69999999999996 7899886

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=99.79  E-value=2.7e-19  Score=148.37  Aligned_cols=57  Identities=26%  Similarity=0.491  Sum_probs=53.5

Q ss_pred             cCCCCcc---eEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          229 VNDDNLF---EWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       229 ~~~~~~~---~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ++++|++   +|+++|. |++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus        55 p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~~~G  114 (190)
T 3o2u_A           55 PDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKG  114 (190)
T ss_dssp             TTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEECSCCCCTTBCTTS
T ss_pred             CCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEEecCcccCCCCCCC
Confidence            5788999   9999996 8889999999999999999999999999999999999999754

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.77  E-value=1.3e-19  Score=149.73  Aligned_cols=84  Identities=26%  Similarity=0.482  Sum_probs=72.6

Q ss_pred             CchHHHHHHHHHHHHHHhC---CCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEe
Q psy621          166 DGNMEKEMVKELRRIAHES---SLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIF  242 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~---~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~  242 (289)
                      +....+|+++|++++.++.   ...+.+.                                     +.++|+++|+++|.
T Consensus        25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~-------------------------------------p~~dnl~~W~~~I~   67 (186)
T 1zuo_A           25 SVQASDRLMKELRDIYRSQSYKTGIYSVE-------------------------------------LINDSLYDWHVKLQ   67 (186)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEE-------------------------------------EETTEEEEEEEEEC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCcEEEE-------------------------------------EcCCccceeEEEEE
Confidence            3456789999999998875   3445543                                     46789999999999


Q ss_pred             CC-CCCCCCC-----------CEEEEEEEcCCCCCCCCCeEEEecCCcCC-CCCCCC
Q psy621          243 GP-PDTLYQG-----------GYFKAHMKFPIDYPYSPPTIRFLTKVWHP-NVYEGT  286 (289)
Q Consensus       243 gp-~~t~y~~-----------g~~~~~i~~~~~yP~~pP~v~f~t~i~hp-nv~~~~  286 (289)
                      || ++|||+|           |.|+++|.||++||++||+|+|.|++||| ||+.+|
T Consensus        68 Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~YP~~PP~V~f~tpi~hPnnV~~~G  124 (186)
T 1zuo_A           68 KVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGG  124 (186)
T ss_dssp             CCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGG
T ss_pred             CCCCCCCccccchhhccccCceEEEEEEECCCCCCCCCCeEEEeCCccCCCccCCCC
Confidence            98 8999998           89999999999999999999999999999 698654

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.65  E-value=5e-17  Score=128.63  Aligned_cols=58  Identities=22%  Similarity=0.335  Sum_probs=54.8

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeEEEecC-CcCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGG----------YFKAHMKFPIDYPYSPPTIRFLTK-VWHPNVYEGT  286 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g----------~~~~~i~~~~~yP~~pP~v~f~t~-i~hpnv~~~~  286 (289)
                      ++++|+.+|.+++.||++|+|+||          .|.+++.||++||.+||+|+|.++ +||||||.+|
T Consensus        50 p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~~~~~hpnmY~~G  118 (172)
T 2z6o_A           50 NNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGG  118 (172)
T ss_dssp             HHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSBCTTS
T ss_pred             cCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCCCCCCCCCCCCCC
Confidence            466799999999999999999999          999999999999999999999998 9999999865

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.49  E-value=2e-15  Score=119.52  Aligned_cols=79  Identities=18%  Similarity=0.084  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCc----------EEEEEE--cCCCCCCCcccceec
Q psy621           10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGG----------YFKAII--EGELPHWDVNVQNQI   77 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~----------~~~v~v--~~~yp~~~P~v~~~~   77 (289)
                      .+||++|+++|++.      +.+ +.+|+.+|.+.+.||++|+|+||          .|.|.+  +++||.+||+++|..
T Consensus        34 ~~RL~eE~k~L~k~------v~p-~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~F~~  106 (172)
T 2z6o_A           34 VQRLKEEYQSLIRY------VEN-NKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPE  106 (172)
T ss_dssp             HHHHHHHHHHHHHH------HHH-HHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGG
T ss_pred             HHHHHHHHHHHHHH------hcc-CccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeeeeCC
Confidence            99999999999993      333 45688899999999999999998          776655  899999999999988


Q ss_pred             c-ccccceeccceeeCccc
Q psy621           78 E-NLTKTFEASSFISAPLY   95 (289)
Q Consensus        78 ~-~~~~~~e~~~~~~~~~~   95 (289)
                      . .+|+++..+|.+|+++.
T Consensus       107 ~~~~hpnmY~~G~ICLdIL  125 (172)
T 2z6o_A          107 LDGKTAKMYRGGKICLTDH  125 (172)
T ss_dssp             GTTTCSSBCTTSBBCCCTT
T ss_pred             CCCCCCCCCCCCcEechhh
Confidence            7 99999999999999986

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.06  E-value=5e-11  Score=92.05  Aligned_cols=55  Identities=24%  Similarity=0.424  Sum_probs=50.3

Q ss_pred             CCcceEEEEEeCCCCCCCCCC----------EEEEEEEcCCCCCCCCCeEEEecC-CcCCCCCCCC
Q psy621          232 DNLFEWEVAIFGPPDTLYQGG----------YFKAHMKFPIDYPYSPPTIRFLTK-VWHPNVYEGT  286 (289)
Q Consensus       232 ~~~~~w~~~i~gp~~t~y~~g----------~~~~~i~~~~~yP~~pP~v~f~t~-i~hpnv~~~~  286 (289)
                      ++=..|...+.||+||+|.|+          .|.+++.||.+||..||+|+|.+. ++|||+|.+|
T Consensus        55 ~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp~ldgkt~kmYr~G  120 (168)
T 3kpa_A           55 ASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALPELEGKTVKMYRGG  120 (168)
T ss_dssp             HTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCGGGTTTCSSEETTT
T ss_pred             cccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecccccCcCccccCCC
Confidence            344579999999999999999          999999999999999999999995 8999998765

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=98.89  E-value=2.2e-09  Score=85.77  Aligned_cols=60  Identities=20%  Similarity=0.190  Sum_probs=47.5

Q ss_pred             CCCCcceEEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCeEEEec-------C---Cc-CCCCCCCCCcC
Q psy621          230 NDDNLFEWEVAIFGPPDTLYQGGY---FKAHMKFPIDYPYSPPTIRFLT-------K---VW-HPNVYEGTAQY  289 (289)
Q Consensus       230 ~~~~~~~w~~~i~gp~~t~y~~g~---~~~~i~~~~~yP~~pP~v~f~t-------~---i~-hpnv~~~~~~~  289 (289)
                      .++...++-+.+.|+-.++|+||.   |.+.|.||.+||++||.|.|.+       +   |+ ||||+++|-.|
T Consensus        56 ~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~~~~~~I~~hpnVD~~G~I~  129 (162)
T 3r3q_A           56 HSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWIA  129 (162)
T ss_dssp             CTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTTTSCTTSTHHHHBCTTSBBC
T ss_pred             cCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCccccccccccCCCCCCCCCCcEe
Confidence            344555555666666669999999   8899999999999999998865       1   77 99999988654

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=98.80  E-value=7.6e-09  Score=79.93  Aligned_cols=87  Identities=16%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCc----------EEEEEE--cCCCCCCCccccee
Q psy621            9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGG----------YFKAII--EGELPHWDVNVQNQ   76 (289)
Q Consensus         9 ~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~----------~~~v~v--~~~yp~~~P~v~~~   76 (289)
                      =..||+.||+.|-+--    ...-..|+   +|...+.||++|.|.|+          .|++.+  |..||..||+++|.
T Consensus        35 w~~RlkeEy~alI~yv----~~nK~~d~---dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI~Fp  107 (168)
T 3kpa_A           35 WTARLKEEYASLITYV----EHNKASDS---HWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEIALP  107 (168)
T ss_dssp             HHHHHHHHHHHHHHHH----HHHHHTTC---CCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCBCG
T ss_pred             HHHHHHHHHHHHHHHH----HhcccccC---CeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEeecc
Confidence            4689999999885420    00002333   49999999999999998          555544  89999999999999


Q ss_pred             cc-ccccceeccceeeCccccCccchHHHH
Q psy621           77 IE-NLTKTFEASSFISAPLYTESWLRSFVS  105 (289)
Q Consensus        77 ~~-~~~~~~e~~~~~~~~~~~~~Wl~~y~~  105 (289)
                      .. ..|+++..+|.+|+++   .|.+.+.+
T Consensus       108 ~ldgkt~kmYr~GkICLdI---hwkPlW~~  134 (168)
T 3kpa_A          108 ELEGKTVKMYRGGKICMTT---HFFPLWAR  134 (168)
T ss_dssp             GGTTTCSSEETTTEECCCT---THHHHHHH
T ss_pred             cccCcCccccCCCcEEecc---ccchhhHh
Confidence            85 7999999999999997   59988864

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=98.50  E-value=1.9e-07  Score=73.35  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=47.8

Q ss_pred             CCCCcceEEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCeEEEecC------CcCCCCCCCCCcC
Q psy621          230 NDDNLFEWEVAIFGPPDTLYQGGYFKA--HMKFPIDYPYSPPTIRFLTK------VWHPNVYEGTAQY  289 (289)
Q Consensus       230 ~~~~~~~w~~~i~gp~~t~y~~g~~~~--~i~~~~~yP~~pP~v~f~t~------i~hpnv~~~~~~~  289 (289)
                      ...++..|.++|.    .+|+|+.|.+  .|-||++||.+||.| |.++      ..||||+++|-.|
T Consensus        49 ~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~  111 (146)
T 3obq_A           49 GSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIY  111 (146)
T ss_dssp             TTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBC
T ss_pred             ChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEe
Confidence            3468999999996    7899999995  888999999999999 7777      5899999988654

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=97.89  E-value=3e-05  Score=61.84  Aligned_cols=90  Identities=16%  Similarity=0.252  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEE---ecCCCCceEEEEEEeCCCCCCccCcE---EEEEE--cCCCCCCCcccceecc---
Q psy621           10 LRALSMEYKSLQEEPVEGFRVK---LVNDDNLFEWEVAIFGPPDTLYQGGY---FKAII--EGELPHWDVNVQNQIE---   78 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~---~~~~~n~~~w~~~i~gp~~t~y~g~~---~~v~v--~~~yp~~~P~v~~~~~---   78 (289)
                      .+|..+|+.++.+. -+++..+   -..+|...++.+.+.|....+|+|+.   |.|.+  +++||++||.+.+...   
T Consensus        30 ~~~~~~dv~~~l~~-yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~  108 (162)
T 3r3q_A           30 GRTTFHDSLALLDN-FHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFD  108 (162)
T ss_dssp             HHHHHHHHHHHHHH-CTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCC
T ss_pred             hhHHHHHHHHHHHh-CCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcc
Confidence            36777888877652 2334433   13556677888889999889999976   54544  8999999999988651   


Q ss_pred             -------cc-ccceeccceeeCccccCccch
Q psy621           79 -------NL-TKTFEASSFISAPLYTESWLR  101 (289)
Q Consensus        79 -------~~-~~~~e~~~~~~~~~~~~~Wl~  101 (289)
                             +. |++++.+|.+|++.+ +.|.+
T Consensus       109 m~~~~~~I~~hpnVD~~G~I~lpyL-~~W~p  138 (162)
T 3r3q_A          109 MNTISSSLPIQEYIDSNGWIALPIL-HAWDP  138 (162)
T ss_dssp             TTTSCTTSTHHHHBCTTSBBCCGGG-GSCCG
T ss_pred             ccccccccCCCCCCCCCCcEeCccc-ccCCC
Confidence                   44 999999999999998 45877

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=96.32  E-value=0.0035  Score=48.96  Aligned_cols=60  Identities=18%  Similarity=0.214  Sum_probs=47.0

Q ss_pred             CCceEEEEEEeCCCCCCccCcEEEE--E--EcCCCCCCCcccceecc------ccccceeccceeeCccccCccch
Q psy621           36 DNLFEWEVAIFGPPDTLYQGGYFKA--I--IEGELPHWDVNVQNQIE------NLTKTFEASSFISAPLYTESWLR  101 (289)
Q Consensus        36 ~n~~~w~~~i~gp~~t~y~g~~~~v--~--v~~~yp~~~P~v~~~~~------~~~~~~e~~~~~~~~~~~~~Wl~  101 (289)
                      .++..|...|-    ..|+|..|.+  .  ++++||+.||.+ +...      ..|++++.+|.+|.+.+.+ |.+
T Consensus        51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~~-W~~  120 (146)
T 3obq_A           51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLHE-WKH  120 (146)
T ss_dssp             CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHHT-CCT
T ss_pred             heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEecccccc-cCC
Confidence            47888888887    6788887754  3  389999999998 4433      4689999999999998744 865

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.60  E-value=0.41  Score=35.95  Aligned_cols=24  Identities=13%  Similarity=0.292  Sum_probs=21.4

Q ss_pred             CEEEEEEEcCCCCCCCCCeEEEec
Q psy621          252 GYFKAHMKFPIDYPYSPPTIRFLT  275 (289)
Q Consensus       252 g~~~~~i~~~~~yP~~pP~v~f~t  275 (289)
                      -.+.+.+.+|++||..||.+...+
T Consensus        55 ~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           55 VQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             CBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             eeEEEEEEeCCCCCCCCceEEEEc
Confidence            368899999999999999998765

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=89.38  E-value=1.1  Score=34.03  Aligned_cols=42  Identities=19%  Similarity=0.316  Sum_probs=29.1

Q ss_pred             cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecC
Q psy621          234 LFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTK  276 (289)
Q Consensus       234 ~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~  276 (289)
                      ...+.+.|.+..+ .-..-...+.+.+|++||..||.|...+.
T Consensus        45 ~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~~   86 (138)
T 2yz0_A           45 QIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKNV   86 (138)
T ss_dssp             CSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEECC
T ss_pred             CcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEecC
Confidence            3456666653222 11234788999999999999999998653

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=88.36  E-value=1.3  Score=33.17  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.9

Q ss_pred             CEEEEEEEcCCCCCCCCCeEEEecC
Q psy621          252 GYFKAHMKFPIDYPYSPPTIRFLTK  276 (289)
Q Consensus       252 g~~~~~i~~~~~yP~~pP~v~f~t~  276 (289)
                      -.+.|.+.+|++||..+|.+...+.
T Consensus        59 ~~~~L~~~~p~~YP~~~P~i~~~~~   83 (128)
T 2day_A           59 VCFTLVLQVPAEYPHEVPQISIRNP   83 (128)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             eeEEEEEEcCCCCCCCCCCeEEEcC
Confidence            4788999999999999999987763

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.63  E-value=1.8  Score=32.33  Aligned_cols=41  Identities=12%  Similarity=0.123  Sum_probs=28.0

Q ss_pred             cceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEec
Q psy621          234 LFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLT  275 (289)
Q Consensus       234 ~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t  275 (289)
                      ...+.+.|...... =..-.+.+.+.+|++||..||.+...+
T Consensus        39 ~~~f~i~l~~~~~~-~~~~~~~L~~~~p~~YP~~~P~i~l~~   79 (128)
T 2ebk_A           39 GTVFRIHTKAEGFM-DADIPLELVFHLPVNYPSCLPGISINS   79 (128)
T ss_dssp             CEEEEEEEECCTTT-TCCCEEEEEEEECSSTTSSCCCCCCCC
T ss_pred             CCeEEEEecCCCCC-CCCeEEEEEEECCCCCCCCCCeEEEEh
Confidence            45666666432211 012378999999999999999987654

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=81.73  E-value=0.77  Score=34.79  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.5

Q ss_pred             CEEEEEEEcCCCCCCCCCeEEEe
Q psy621          252 GYFKAHMKFPIDYPYSPPTIRFL  274 (289)
Q Consensus       252 g~~~~~i~~~~~yP~~pP~v~f~  274 (289)
                      -.+.|.+.+|++||..||.|...
T Consensus        63 ~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           63 VQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             CEEEEEECCCTTTTSSCCCCEEE
T ss_pred             eEEEEEEECCCCCCCCCCcEEEe
Confidence            36899999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	289
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	1e-18
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	6e-13
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-16
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	7e-11
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	5e-16
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	1e-09
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	8e-16
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	6e-08
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	2e-14
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	7e-05
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-14
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	4e-12
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	1e-13
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	4e-11
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	1e-13
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	4e-12
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-13
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	2e-08
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	4e-13
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	4e-07
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	5e-13
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-08
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-13
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	8e-09
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	1e-12
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	2e-04
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	1e-12
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	5e-07
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	2e-12
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	6e-12
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	2e-12
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-09
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	4e-12
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	9e-11
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-12
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-08
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-11
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-07
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	2e-11
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	3e-09
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	2e-11
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	3e-07
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	9e-11
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	0.001
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	2e-10
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	3e-07
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	3e-10
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-09
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	1e-09
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	6e-07
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-09
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-07
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	2e-09
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	4e-07
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	2e-09
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	5e-09
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	5e-09
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	1e-08
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	4e-07
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	9e-05
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	6e-05

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 77.8 bits (191), Expect = 1e-18
 Identities = 35/63 (55%), Positives = 48/63 (76%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           F   L++D++L+ WEV I GPPDTLY+GG FKAH+ FP DYP  PP ++F+T++WHPNV 
Sbjct: 19  FSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD 78

Query: 284 EGT 286
           +  
Sbjct: 79  KNG 81

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 62.4 bits (151), Expect = 6e-13
 Identities = 26/57 (45%), Positives = 36/57 (63%)

Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHW 69
          L  +   L + PVEGF   L++D++L+ WEV I GPPDTLY+GG FKA +     + 
Sbjct: 4  LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYP 60

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 73.3 bits (179), Expect = 1e-16
 Identities = 31/66 (46%), Positives = 49/66 (74%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           F   LV+D+++++WEV + GPPDTLY+GG+FKA + FP DYP  PP ++F++++WHPN+ 
Sbjct: 20  FSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNID 79

Query: 284 EGTAQY 289
           +     
Sbjct: 80  KEGNVC 85

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 57.5 bits (138), Expect = 7e-11
 Identities = 26/62 (41%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 8  SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELP 67
          S+L  L  +   ++  PV+GF   LV+D+++++WEV + GPPDTLY+GG+FKAI++    
Sbjct: 1  SSLL-LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRD 59

Query: 68 HW 69
          + 
Sbjct: 60 YP 61

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 70.9 bits (173), Expect = 8e-16
 Identities = 22/63 (34%), Positives = 34/63 (53%)

Query: 227 KLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
           K+   D + E+ V   GP  T Y+ G +  H++ P DYP+  P+I F  ++ HPNV E +
Sbjct: 18  KVYPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS 77

Query: 287 AQY 289
              
Sbjct: 78  GSV 80

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 49.0 bits (116), Expect = 6e-08
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWD 70
          R   M+Y  L     + +       D + E+ V   GP  T Y+ G +   ++    +  
Sbjct: 3  RRREMDYMRLCNSTRKVY-----PSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPF 57

Query: 71 VNVQ 74
           +  
Sbjct: 58 KSPS 61

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 66.9 bits (163), Expect = 2e-14
 Identities = 18/66 (27%), Positives = 31/66 (46%)

Query: 221 FIRFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHP 280
            + + ++   D  L  W   I GPP T+Y+   +   ++    YP +PP +RF+TK+   
Sbjct: 25  TVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN 84

Query: 281 NVYEGT 286
            V    
Sbjct: 85  GVNSSN 90

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 39.6 bits (92), Expect = 7e-05
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 2  AQVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDD---NLFEWEVAIFGPPDTLYQGGYF 58
           +VP +     L  E +  Q+   +G     + DD    L  W   I GPP T+Y+   +
Sbjct: 2  VKVPRN---FRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIY 58

Query: 59 KAIIE 63
             IE
Sbjct: 59 SLKIE 63

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 66.0 bits (160), Expect = 5e-14
 Identities = 22/66 (33%), Positives = 39/66 (59%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
             ++ V++ ++   +    GPP T Y+GG F   ++ P++YP+ PP ++F TKV+HPN+ 
Sbjct: 21  ITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS 80

Query: 284 EGTAQY 289
             T   
Sbjct: 81  SVTGAI 86

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 60.6 bits (146), Expect = 4e-12
 Identities = 13/55 (23%), Positives = 29/55 (52%)

Query: 8  SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
          S  + +  E ++++++P     ++ V++ ++   +    GPP T Y+GG F   I
Sbjct: 1  SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDI 55

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query: 228 LVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
             + DNLF+W   + GP DT+Y+   +K  ++FP DYPY PP ++F T  WHPNV +  
Sbjct: 32  FPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSG 90

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 57.8 bits (139), Expect = 4e-11
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 5  PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
             S  + L  E ++L      G      + DNLF+W   + GP DT+Y+   +K  +
Sbjct: 6  ERHSVSKRLQQELRTLLMSGDPGITA-FPDGDNLFKWVATLDGPKDTVYESLKYKLTL 62

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.3 bits (156), Expect = 1e-13
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVW--HPNVYEGTA 287
             +++ +W V + G P TLY+G  F+   KF   YP+  P + F  +    HP+VY    
Sbjct: 30  VQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGH 89

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 4e-12
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVN-DDNLFEWEVAIFGPPDTLYQGGYFKAIIEGE 65
          +S  + L  E  +LQ +P  G  +   +  +++ +W V + G P TLY+G  F+ + +  
Sbjct: 2  ASMQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFS 61

Query: 66 LPHW 69
            + 
Sbjct: 62 SRYP 65

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 226 VKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           +   + D+L  +++ +  P +  Y+ G F    K    YP+ PP ++  T V+HPN+ 
Sbjct: 23  ISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNID 79

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGEL 66
          S+A   +  +   L         +   + D+L  +++ +  P +  Y+ G F    +   
Sbjct: 2  SAAQLRIQKDINELNLPKTCD--ISFSDPDDLLNFKL-VICPDEGFYKSGKFVFSFKVGQ 58

Query: 67 PHW 69
           + 
Sbjct: 59 GYP 61

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 63.3 bits (153), Expect = 4e-13
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
             D+LF W+  I GPP++ YQGG F   + FP DYP+ PP + F T+++HPN+    
Sbjct: 26  VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG 82

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 46.3 bits (109), Expect = 4e-07
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 9  ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
          AL+ +  E + L  +P        V  D+LF W+  I GPP++ YQGG F   I
Sbjct: 2  ALKRIQKELQDLGRDPPAQCSAGPV-GDDLFHWQATIMGPPESPYQGGVFFLTI 54

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 5e-13
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
              DN++EW   I GPP ++Y+GG F   + F  DYP+ PP + F T+++H N+  
Sbjct: 26  PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINS 81

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 2e-08
 Identities = 16/68 (23%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGEL 66
          S++ + +  E   +  +P           DN++EW   I GPP ++Y+GG F   I    
Sbjct: 1  STSAKRIQKELAEITLDPPPNCSAG-PKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSP 59

Query: 67 PHWDVNVQ 74
           +     +
Sbjct: 60 DYPFKPPK 67

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 63.2 bits (153), Expect = 5e-13
 Identities = 23/55 (41%), Positives = 35/55 (63%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
             DN+  W   I GP DT Y+ G F+  ++F  +YP  PP ++FL++++HPNVY 
Sbjct: 28  LPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYA 82

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 51.3 bits (122), Expect = 8e-09
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIE 63
          ++ A R L  ++K ++E+   G     +  DN+  W   I GP DT Y+ G F+ ++E
Sbjct: 1  STPARRRLMRDFKRMKEDAPPGVSASPL-PDNVMVWNAMIIGPADTPYEDGTFRLLLE 57

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 61.6 bits (149), Expect = 1e-12
 Identities = 16/57 (28%), Positives = 29/57 (50%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
           +D  + +W   I GPP + ++   +   +    +YP SPP + F++K+  P V   T
Sbjct: 33  DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTT 89

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 10/109 (9%)

Query: 2   AQVPTSSALRALSMEYKSLQ-EEPVEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGYF 58
           ++VP +  L     E +  +     E     L + D   + +W   I GPP + ++   +
Sbjct: 1   SKVPRNFRLLE---ELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIY 57

Query: 59  KAIIEGELPHWD----VNVQNQIENLTKTFEASSFISAPLYTESWLRSF 103
              I+    + D    V   ++I             +       W R++
Sbjct: 58  SLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAY 106

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 62.5 bits (151), Expect = 1e-12
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
           +   ++  W   I GP  T Y+GG+F   +  P DYPY+PP ++F+TK+WHPN+   T
Sbjct: 38  IVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQT 95

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 46.3 bits (109), Expect = 5e-07
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
          L+       +       G   ++V   ++  W   I GP  T Y+GG+F   I
Sbjct: 16 LQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDI 67

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 22/60 (36%), Positives = 37/60 (61%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQY 289
             +++ EWEV I G  ++++QG  F+  + F  +Y Y+PP ++F+T  +HPNV   T Q 
Sbjct: 29  VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQP 88

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 60.1 bits (145), Expect = 6e-12
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGE 65
             A   L  ++  L+E   +G   K V  +++ EWEV I G  ++++QG  F+  I   
Sbjct: 2  HGRAYLLLHRDFCDLKENNYKGITAKPV-SEDMMEWEVEIEGLQNSVWQGLVFQLTIHFT 60

Query: 66 LPHW 69
            + 
Sbjct: 61 SEYN 64

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 61.3 bits (148), Expect = 2e-12
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
            R    +D N+  W   +  P    Y    F   + FP +YP+ PP I+F TK++HPNV 
Sbjct: 20  LRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD 78

Query: 284 EGT 286
           E  
Sbjct: 79  ENG 81

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 4e-09
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 9  ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPH 68
          A   +  E + LQ++P    R    +D N+  W   +  P    Y    F   I     +
Sbjct: 1  ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHA-LLLPDQPPYHLKAFNLRISFPPEY 59

Query: 69 W 69
           
Sbjct: 60 P 60

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 60.6 bits (146), Expect = 4e-12
 Identities = 26/55 (47%), Positives = 31/55 (56%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
              NL  WE AI G   T ++GG FK  M F  DYP SPP  +F   ++HPNVY 
Sbjct: 32  GTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYP 86

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 57.1 bits (137), Expect = 9e-11
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 9  ALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKAIIEG 64
          AL  L+ E K+ +++   GF      +     NL  WE AI G   T ++GG FK  +  
Sbjct: 3  ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLF 62

Query: 65 ELPHW 69
          +  + 
Sbjct: 63 KDDYP 67

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 60.6 bits (146), Expect = 6e-12
 Identities = 26/64 (40%), Positives = 36/64 (56%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
                 +++N+F W+  I GPPDT Y  G F A ++FP DYP SPP + F   + HPN+Y
Sbjct: 23  IVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIY 82

Query: 284 EGTA 287
               
Sbjct: 83  PNGE 86

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 17/53 (32%), Positives = 28/53 (52%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYF 58
          + +A + L  E + L ++   G      +++N+F W+  I GPPDT Y  G F
Sbjct: 1  SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVF 53

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
            +DDNL  ++V I GP  + Y+ G F+  +  P DYP   P +RFLTK++HPN+  
Sbjct: 27  PHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR 82

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 45.9 bits (108), Expect = 6e-07
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
          +S  + +  E + L  +PV G   +  +DDNL  ++V I GP  + Y+ G F+  +
Sbjct: 2  ASLPKRIIKETEKLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIFELEL 56

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 58.6 bits (141), Expect = 2e-11
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 224 FRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVY 283
           FR   V++ NL  W+  I  P +  Y  G F+  + FP +YP+ PP I F TK++HPN+ 
Sbjct: 19  FRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID 77

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-09
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHW 69
          R L  E + +++  ++ FR   V++ NL  W+  I  P +  Y  G F+  I     + 
Sbjct: 2  RRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYP 59

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.7 bits (141), Expect = 2e-11
 Identities = 27/58 (46%), Positives = 39/58 (67%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT 286
           + D+N  E    I GPPDT Y+GG ++  +K P  YP++PP +RF+TK+WHPN+   T
Sbjct: 31  LVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVT 88

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (110), Expect = 3e-07
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 6  TSSALRALSMEYKSLQ---EEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
           + A++ +  E+K +    E      +V LV D+N  E    I GPPDT Y+GG ++  I
Sbjct: 2  ANIAVQRIKREFKEVLKSEETSKNQIKVDLV-DENFTELRGEIAGPPDTPYEGGRYQLEI 60

Query: 63 EGELPHW 69
          +    + 
Sbjct: 61 KIPETYP 67

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 9e-11
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 7/62 (11%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMK--FPIDYPYSPPTIRFLTK-----VWHPN 281
           V +D      + + G     Y+G  +   +       YPY+PP                +
Sbjct: 41  VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 100

Query: 282 VY 283
           V 
Sbjct: 101 VD 102

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 7/36 (19%), Positives = 12/36 (33%)

Query: 33 VNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPH 68
          V +D      + + G     Y+G  +   I   L  
Sbjct: 41 VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLD 76

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 2e-10
 Identities = 22/56 (39%), Positives = 36/56 (64%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
            ++ N   + V I GP D+ ++GG FK  +  P +YP + P +RF+TK++HPNV +
Sbjct: 26  PDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK 81

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 47.1 bits (111), Expect = 3e-07
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
          +   R +  E + L  EPV G + +  ++ N   + V I GP D+ ++GG FK  +
Sbjct: 1  AGLPRRIIKETQRLLAEPVPGIKAE-PDESNARYFHVVIAGPQDSPFEGGTFKLEL 55

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 54.7 bits (131), Expect = 3e-10
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKV-WHPNVYEGTA 287
           V+ +N+  W V   G  +T+Y    +K  + FP DYP  PP + FL K   H +VY    
Sbjct: 22  VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD 81

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 51.6 bits (123), Expect = 2e-09
 Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 13 LSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPHWD 70
          +  E  +    P     +  V+ +N+  W V   G  +T+Y    +K  I     +  
Sbjct: 3  IQKELHNFLNNPPINCTLD-VHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPL 59

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 1e-09
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ 288
            + D + +    I G  +T Y+ G FK  +  P  YP+ PP IRFLT ++HPN+      
Sbjct: 26  QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRI 85

Query: 289 Y 289
            
Sbjct: 86  C 86

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 6e-07
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 8  SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELP 67
               L  E   L  EP  G      + D + +    I G  +T Y+ G FK  +     
Sbjct: 2  QRASRLKRELHMLATEPPPGITCW-QDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPER 60

Query: 68 HW 69
          + 
Sbjct: 61 YP 62

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 24/55 (43%), Positives = 34/55 (61%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
             DNLF+W   I G   T+Y+   +K  ++FP  YPY+ PT++FLT  +HPNV  
Sbjct: 26  ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDT 80

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 15/69 (21%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 9  ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELPH 68
            + L  E  +L     +G        DNLF+W   I G   T+Y+   +K  +E    +
Sbjct: 2  VGKRLQQELMTLMMSGDKGISAF-PESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60

Query: 69 WDVNVQNQI 77
                 + 
Sbjct: 61 PYNAPTVKF 69

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 24/62 (38%), Positives = 34/62 (54%)

Query: 228 LVNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA 287
             N+++L + +V I GP  T Y GG F+  +    D+P SPP   FLTK++HPNV     
Sbjct: 29  FPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGE 88

Query: 288 QY 289
             
Sbjct: 89  IC 90

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 4e-07
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 7  SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII 62
             +R +  E  +L  +P +G +V   N+++L + +V I GP  T Y GG F+  +
Sbjct: 5  PHIIRLVYKEVTTLTADPPDGIKVF-PNEEDLTDLQVTIEGPEGTPYAGGLFRMKL 59

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 53.2 bits (127), Expect = 2e-09
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYE 284
            +DN+  WE  IFGP +T ++ G FK  ++F  +YP  PPT++F++K++HPNVY 
Sbjct: 28  TEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYA 82

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)

Query: 6  TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGE 65
          T+ + R L  ++K LQE+P  G       +DN+  WE  IFGP +T ++ G FK  +E  
Sbjct: 1  TTPSRRRLMRDFKKLQEDPPAGVSGAP-TEDNILTWEAIIFGPQETPFEDGTFKLSLEFT 59

Query: 66 LPHW 69
            + 
Sbjct: 60 EEYP 63

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 230 NDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNV 282
              N+ EW   + GP  T Y+GGY+   + FP ++P+ PP+I  +T       
Sbjct: 26  LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKC 78

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 1e-08
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 8  SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAIIEGELP 67
          +A + L  +Y  ++++PV     + +   N+ EW   + GP  T Y+GGY+   +     
Sbjct: 1  TATQRLKQDYLRIKKDPVPYICAEPL-PSNILEWHYVVRGPEMTPYEGGYYHGKLIFPRE 59

Query: 68 HW 69
            
Sbjct: 60 FP 61

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 4e-07
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 229 VNDDNLFEWEVAIFG-PPDTLYQGG-----------YFKAHMKFPIDYPYSPPTIRFLTK 276
           + +D+L++W V +    PD+                Y   +  F  ++P+ PP +R +  
Sbjct: 31  LINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLP 90

Query: 277 VWHPNVYEGTAQ 288
           V       G   
Sbjct: 91  VLSGGYVLGGGA 102

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 6  TSSALRALSMEYKSLQEEPVE--GFRVKLVNDDNLFEWEVAIFG-PPDTLYQGGYFKAII 62
          +  A   L  E + +        G     + +D+L++W V +    PD+           
Sbjct: 2  SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKE 61

Query: 63 EGELPHWDVNVQ 74
          +  + +  +N  
Sbjct: 62 KEGIEYILLNFS 73

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 12/71 (16%), Positives = 20/71 (28%), Gaps = 14/71 (19%)

Query: 227 KLVNDDNLFEWEVAIFGPPDTLYQGG---YFKAHMKFPIDYPYSPPTIRFLTKVW----- 278
              + D   +  ++I+G   T   G         M  P  YP  PP I    + +     
Sbjct: 44  VFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTI 103

Query: 279 ------HPNVY 283
                    + 
Sbjct: 104 SSSLPIQEYID 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	289
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.89
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	99.89
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.89
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.89
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.88
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	99.88
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.88
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.88
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.88
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.88
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.88
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.88
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	99.88
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.88
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.88
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.88
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	99.88
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	99.88
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.88
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.88
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.88
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.88
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	99.88
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.88
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.88
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	99.87
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	99.87
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.87
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.87
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.87
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.87
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.87
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.86
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.86
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.86
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	99.86
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.86
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.86
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.86
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	99.85
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.85
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.85
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.84
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	99.84
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.84
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.83
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.83
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.83
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.81
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	99.8
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.8
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.78
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.78
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.77
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.73
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.73
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.7
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.7
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.28
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	98.76
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	98.57
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	97.95
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	88.62

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=99.89  E-value=1.4e-23  Score=167.27  Aligned_cols=82  Identities=30%  Similarity=0.632  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      ..+|+++|++.+.++.+.++++.                                     ++++|+++|+++|.||+|||
T Consensus         3 ~~~Rl~kE~~~l~~~~~~gi~~~-------------------------------------p~~~~~~~w~~~I~Gp~~Tp   45 (154)
T d1yh2a1           3 RASRLKRELHMLATEPPPGITCW-------------------------------------QDKDQMDDLRAQILGGANTP   45 (154)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ESSSCTTEEEEEEECCTTST
T ss_pred             HHHHHHHHHHHHHHCcCCCEEEE-------------------------------------ECCcchhhhhceEeCCCCCC
Confidence            34789999999999988888876                                     78899999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |+||+|+++|.||++||++||+|+|.|++|||||+++|+
T Consensus        46 Y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~~g~   84 (154)
T d1yh2a1          46 YEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGR   84 (154)
T ss_dssp             TTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             CCCCEEEEEEecCccccCCCceeeccCCCCcCCcCCCCC
Confidence            999999999999999999999999999999999998774

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-23  Score=159.69  Aligned_cols=83  Identities=28%  Similarity=0.572  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCC
Q psy621          170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLY  249 (289)
Q Consensus       170 ~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y  249 (289)
                      .+|+++|++++.++.+.++.+..                                   .+.++|+++|+++|.||+||||
T Consensus         5 ~kRL~kEl~~l~~~~~~~~~~~~-----------------------------------~~~~~~l~~w~~~i~Gp~~tpy   49 (117)
T d2a7la1           5 QKRLQKELLALQNDPPPGMTLNE-----------------------------------KSVQNSITQWIVDMEGAPGTLY   49 (117)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCT-----------------------------------TCCCCSCEEEEEEEECCTTSTT
T ss_pred             HHHHHHHHHHHhhCCCCCeEEEE-----------------------------------ecCCCCceEEEEEEeCCCCccc
Confidence            47999999999998766665431                                   1466799999999999999999


Q ss_pred             CCCEEEEEEEcCCCCCCCCCeEEEecCC--cCCCCCCCCC
Q psy621          250 QGGYFKAHMKFPIDYPYSPPTIRFLTKV--WHPNVYEGTA  287 (289)
Q Consensus       250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i--~hpnv~~~~~  287 (289)
                      +||.|+++|.||++||++||+|+|.|++  |||||+.+|.
T Consensus        50 ~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpnv~~~G~   89 (117)
T d2a7la1          50 EGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGH   89 (117)
T ss_dssp             TTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTBCTTCB
T ss_pred             cCCeeeEEEecCcccccCCCEEEEeCCCccccccCcCCCe
Confidence            9999999999999999999999999987  9999998663

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=99.89  E-value=4.4e-23  Score=165.97  Aligned_cols=85  Identities=36%  Similarity=0.776  Sum_probs=77.3

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ..+.+|+++|++++.++.+.++.+.                                    |.+++|+++|+++|.||+|
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~------------------------------------p~~e~nl~~w~~~I~Gp~~   45 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAG------------------------------------PKSENNIFIWDCLIQGPPD   45 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEE------------------------------------ESSSSCCSEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEE------------------------------------ECCccchhhhheeeeCCCc
Confidence            4567899999999999877777775                                    2467799999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |||+||+|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus        46 tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~~~G~   86 (164)
T d2ucza_          46 TPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGE   86 (164)
T ss_dssp             STTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTBCTTSB
T ss_pred             ccccCCeeEEEEecCCCCCCCCCeEEeecCceeceEcCCCC
Confidence            99999999999999999999999999999999999998764

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=99.89  E-value=2.9e-23  Score=164.41  Aligned_cols=125  Identities=25%  Similarity=0.439  Sum_probs=102.8

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      |++|.|||+||+++|++++++|+.+.+ .++|+++|.+.|.||++|+|+||.|++.+  +++||+.||+++|.++++|||
T Consensus         1 ~~pa~rRl~~E~~~l~~~~~~gi~~~p-~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   79 (149)
T d1z3da1           1 TTPSRRRLMRDFKKLQEDPPAGVSGAP-TEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPN   79 (149)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHhhCCCCCEEEEE-CCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCccccee
Confidence            457889999999999999999999997 66799999999999999999999886655  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      +..+|.+|++.+.+.|.+++         +.+|...  +++.|..     .++.+.|.+.++++
T Consensus        80 I~~~G~iCl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~  143 (149)
T d1z3da1          80 VYADGSICLDILQNRWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQI  143 (149)
T ss_dssp             BCTTCBBCCGGGTTSCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             EcCCCCEEeccccccCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998774         2222211  2333322     25677787777763

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.88  E-value=5.3e-23  Score=160.38  Aligned_cols=87  Identities=23%  Similarity=0.407  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      +..|+++|++++.++.+.+..++.                                 ....+++|+++|+++|.||++||
T Consensus         6 r~~RL~kEl~~l~k~~~~~~~~~~---------------------------------~~~~~d~nl~~W~~~I~Gp~~Tp   52 (139)
T d2a4da1           6 RNFRLLEELEEGQKGVGDGTVSWG---------------------------------LEDDEDMTLTRWTGMIIGPPRTI   52 (139)
T ss_dssp             HHHHHHHHHHHHHSCCTTSSEEEE---------------------------------ESSTTCTTCCEEEEEEECCTTST
T ss_pred             hhHHHHHHHHHHhhCCCCCceeee---------------------------------ccCCCcccccEEEEEEECCCCCc
Confidence            457999999999998766555442                                 11245668999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCCc
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ  288 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~~  288 (289)
                      |+||.|+++|.||++||++||+|+|.|++|||||+.+||+
T Consensus        53 Yegg~f~~~i~fp~~YP~~pP~v~F~t~i~HpnV~~~~g~   92 (139)
T d2a4da1          53 YENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGV   92 (139)
T ss_dssp             TTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCB
T ss_pred             hhcCEEEEEEECCCCCCCCCCEEEEecCcccccCcCCCCE
Confidence            9999999999999999999999999999999999998875

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=99.88  E-value=5.7e-23  Score=163.58  Aligned_cols=102  Identities=24%  Similarity=0.368  Sum_probs=92.7

Q ss_pred             CCCCC-ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceec
Q psy621            1 MAQVP-TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQI   77 (289)
Q Consensus         1 m~~~~-~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~   77 (289)
                      ||.+. ..++.|||+||+++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.+  +++||++||.++|.+
T Consensus         1 m~~~~~~~~~~kRl~kEl~~l~~~~~~gi~~~p-~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t   79 (156)
T d2e2ca_           1 MTTSKERHSVSKRLQQELRTLLMSGDPGITAFP-DGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTT   79 (156)
T ss_dssp             CCCCCSCCCHHHHHHHHHHHHHHHCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             CCCCcccchHHHHHHHHHHHHhHCCCCCEEEEE-CCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccc
Confidence            55433 347889999999999999999999997 78899999999999999999999986655  899999999999999


Q ss_pred             cccccceeccceeeCccccCccchHH
Q psy621           78 ENLTKTFEASSFISAPLYTESWLRSF  103 (289)
Q Consensus        78 ~~~~~~~e~~~~~~~~~~~~~Wl~~y  103 (289)
                      .++||++..+|.+|++++.+.|.+++
T Consensus        80 ~i~Hpnv~~~G~icl~~l~~~Wsp~~  105 (156)
T d2e2ca_          80 PCWHPNVDQSGNICLDILKENWTASY  105 (156)
T ss_dssp             CCCBTTBCTTCBBCCGGGTTTCCTTC
T ss_pred             cCcCCCCCCCCCccccccCCCCCCcc
Confidence            99999999999999999999998884

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=99.88  E-value=4e-23  Score=162.75  Aligned_cols=81  Identities=36%  Similarity=0.697  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCC
Q psy621          170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLY  249 (289)
Q Consensus       170 ~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y  249 (289)
                      .+|+++|++++.++...++.+.                                     +.++|+++|+++|.||+||||
T Consensus         3 ~kRl~~El~~l~~~~~~~i~~~-------------------------------------~~~~d~~~w~~~i~gp~~tpy   45 (146)
T d1i7ka_           3 GKRLQQELMTLMMSGDKGISAF-------------------------------------PESDNLFKWVGTIHGAAGTVY   45 (146)
T ss_dssp             HHHHHHHHHHHHHHCCTTEEEE-------------------------------------EETTEEEEEEEEEEBCTTSTT
T ss_pred             HHHHHHHHHHHhhCCCCCEEEE-------------------------------------EcCCcccEEEEEEecCccccc
Confidence            5799999999999987787775                                     678899999999999999999


Q ss_pred             CCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          250 QGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +||+|+++|.||++||++||+|+|.|++|||||+.+|+
T Consensus        46 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~   83 (146)
T d1i7ka_          46 EDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGN   83 (146)
T ss_dssp             BTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTTCB
T ss_pred             cCCEEEEEEEecCCCCcCCceeeecCCCCcccCCCCCc
Confidence            99999999999999999999999999999999998875

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.88  E-value=6.8e-23  Score=157.36  Aligned_cols=80  Identities=45%  Similarity=0.972  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      .++++|++++.++...++.+.                                    +.+++|+++|+++|.||++|||+
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~------------------------------------~~~~~dl~~w~~~i~Gp~~tpye   45 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAG------------------------------------LIDDNDLYRWEVLIIGPPDTLYE   45 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEE------------------------------------ESSTTCTTEEEEEEECCTTSTTT
T ss_pred             chHHHHHHHHHhCCCCCEEEE------------------------------------eCCCCCceEEEEEEeCCCCcccC
Confidence            478999999999977777764                                    14677999999999999999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||.|+++|.||++||++||+|+|.|+++||||+.+|
T Consensus        46 gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G   81 (125)
T d2awfa1          46 GGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNG   81 (125)
T ss_dssp             TCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             CCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCC
Confidence            999999999999999999999999999999999876

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=99.88  E-value=6.4e-23  Score=162.26  Aligned_cols=124  Identities=21%  Similarity=0.393  Sum_probs=103.9

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccce
Q psy621            7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTF   84 (289)
Q Consensus         7 ~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~   84 (289)
                      ++|.|||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||.+||+++|.+.++|||+
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~-~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv   79 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGP-KGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNI   79 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEE-CCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceE
Confidence            47899999999999999999999997 67899999999999999999999876655  8999999999999999999999


Q ss_pred             eccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           85 EASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        85 e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      ...|.+|+++..+.|.+++         +.+|.. + ++++|..+     ++++.|.+.++++
T Consensus        80 ~~~G~iCl~~l~~~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~  142 (148)
T d1y6la_          80 NSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQW  142 (148)
T ss_dssp             CTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCeEEEEecCCcCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999999998774         233322 1 33333322     5777888888874

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.88  E-value=6.2e-23  Score=153.61  Aligned_cols=79  Identities=32%  Similarity=0.595  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCCC
Q psy621          172 EMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQG  251 (289)
Q Consensus       172 ~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~~  251 (289)
                      |+++|++++.++.+.++.+.                                     ++++|+++|+++|.||++|||+|
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~-------------------------------------~~~~~~~~w~~~i~gp~~tpy~g   44 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLD-------------------------------------VHPNNIRIWIVKYVGLENTIYAN   44 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEE-------------------------------------ECTTCTTEEEEEEECCTTSTTTT
T ss_pred             HHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCcccEEEEEEecCchhhhcC
Confidence            68999999999988888876                                     68899999999999999999999


Q ss_pred             CEEEEEEEcCCCCCCCCCeEEEecCC-cCCCCCCCCC
Q psy621          252 GYFKAHMKFPIDYPYSPPTIRFLTKV-WHPNVYEGTA  287 (289)
Q Consensus       252 g~~~~~i~~~~~yP~~pP~v~f~t~i-~hpnv~~~~~  287 (289)
                      |.|+++|.||++||++||+|+|.|++ +||||+.+|.
T Consensus        45 g~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~   81 (109)
T d2fo3a1          45 EVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD   81 (109)
T ss_dssp             CEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSB
T ss_pred             CCceEEEEeccccCCCCCeEEEEeccccCceECCCCe
Confidence            99999999999999999999999986 8999988764

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=99.88  E-value=5.2e-23  Score=162.91  Aligned_cols=82  Identities=33%  Similarity=0.821  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      ..+|+.+|++++.++.+.++.+.                                     +.++|+++|+++|.||++||
T Consensus         4 a~rRl~~E~~~l~~~~~~gi~~~-------------------------------------p~~~n~~~w~~~i~gp~~tp   46 (149)
T d1z3da1           4 SRRRLMRDFKKLQEDPPAGVSGA-------------------------------------PTEDNILTWEAIIFGPQETP   46 (149)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTTST
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEE-------------------------------------ECCCchhhhceeEECCCCcc
Confidence            45899999999999887788776                                     67889999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |+||+|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus        47 y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~   85 (149)
T d1z3da1          47 FEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVYADGS   85 (149)
T ss_dssp             TTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred             ccCCEEEEEEEecCcCCCCCcEEEecCcccceeEcCCCC
Confidence            999999999999999999999999999999999998753

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=99.88  E-value=7.1e-23  Score=161.53  Aligned_cols=84  Identities=26%  Similarity=0.544  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+++++|++++.++...++.+.                                     +.++|+++|+++|.||++|
T Consensus         4 ~a~~~L~kE~~~l~~~~~~gi~v~-------------------------------------p~~~n~~~W~~~i~Gp~~t   46 (148)
T d1yrva1           4 RAYLLLHRDFCDLKENNYKGITAK-------------------------------------PVSEDMMEWEVEIEGLQNS   46 (148)
T ss_dssp             HHHHHHHHHHHHHHHHCCTTEEEE-------------------------------------ECSTTSCEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHHCCCCCEEEE-------------------------------------ECCCcccEEEEEEEeCCCC
Confidence            345789999999999988888876                                     6788999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCCc
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ  288 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~~  288 (289)
                      ||+||+|+++|.||++||.+||+|+|.|++|||||+..+|+
T Consensus        47 ~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnV~~~~G~   87 (148)
T d1yrva1          47 VWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQ   87 (148)
T ss_dssp             TTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTTBCTTTCC
T ss_pred             ccCCCceEEEEEeccccccCCceeeeccccccCceecCccc
Confidence            99999999999999999999999999999999999976663

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=99.88  E-value=4.6e-23  Score=163.02  Aligned_cols=81  Identities=37%  Similarity=0.819  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      +.+|+++|++++.++.+.++++.                                     +.++|+++|+++|.||++||
T Consensus         2 a~kRL~~E~~~l~~~~~~~i~~~-------------------------------------~~~~n~~~w~~~i~gp~~t~   44 (147)
T d1z2ua1           2 ALKRIQKELQDLGRDPPAQCSAG-------------------------------------PVGDDLFHWQATIMGPPESP   44 (147)
T ss_dssp             HHHHHHHHHHHHHHSCCSSEEEE-------------------------------------EETTEEEEEEEEEECCTTST
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEE-------------------------------------ECCCchhhhhheecCCCCCC
Confidence            35899999999999988888876                                     67889999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |+||.|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus        45 y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G   82 (147)
T d1z2ua1          45 YQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNG   82 (147)
T ss_dssp             TTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             cCCCceEEEEecCcCCCCCCceEEEecCCceeeECCCC
Confidence            99999999999999999999999999999999999754

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=99.88  E-value=5.1e-23  Score=162.90  Aligned_cols=80  Identities=33%  Similarity=0.640  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      +|+++|++++.++...++.+.                                     ++++|+++|+++|.||++|||+
T Consensus         5 kRl~kEl~~l~~~~~~gi~~~-------------------------------------p~~~n~~~w~~~i~gp~~tpy~   47 (149)
T d1j7db_           5 RRIIKETQRLLAEPVPGIKAE-------------------------------------PDESNARYFHVVIAGPQDSPFE   47 (149)
T ss_dssp             HHHHHHHHHHTTSCCTTEEEE-------------------------------------ECSSCTTEEEEEEECCTTSTTT
T ss_pred             HHHHHHHHHHHhCCCCCEEEE-------------------------------------ECCCcccEeeeEEECCcccccC
Confidence            699999999999877777776                                     6889999999999999999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ||+|+++|.||++||++||+|+|.|++|||||+++|.
T Consensus        48 gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G~   84 (149)
T d1j7db_          48 GGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGR   84 (149)
T ss_dssp             TCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCB
T ss_pred             CCEEEEEEecCCcccCCCceeeecCCCCCceECCCCc
Confidence            9999999999999999999999999999999997663

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=99.88  E-value=2.8e-23  Score=164.81  Aligned_cols=81  Identities=33%  Similarity=0.657  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      ..+|+++|++++.++...++.+.                                     ++++|+++|+++|.||++||
T Consensus         4 ~~rRl~~E~~~l~~~~~~g~~~~-------------------------------------p~~~n~~~w~~~i~gp~~t~   46 (152)
T d1jata_           4 LPKRIIKETEKLVSDPVPGITAE-------------------------------------PHDDNLRYFQVTIEGPEQSP   46 (152)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTTST
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCCccchhheeeeCCchhh
Confidence            34799999999999988888876                                     67899999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |+||+|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus        47 y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~G   84 (152)
T d1jata_          47 YEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLG   84 (152)
T ss_dssp             TTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             hcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCCCC
Confidence            99999999999999999999999999999999999865

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=99.88  E-value=1.5e-22  Score=162.85  Aligned_cols=127  Identities=22%  Similarity=0.348  Sum_probs=103.3

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      |.+|.|||+||+++|++++++|+.+.+.+++|+++|.+.|.||++|+|+||.|.+.|  +++||++||+++|.+.++||+
T Consensus         1 s~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   80 (164)
T d2ucza_           1 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN   80 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred             CHHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceece
Confidence            468999999999999999999999998788899999999999999999999886655  899999999999999999999


Q ss_pred             eeccceeeCcccc-------------CccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHhh
Q psy621           84 FEASSFISAPLYT-------------ESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDLW  132 (289)
Q Consensus        84 ~e~~~~~~~~~~~-------------~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~~  132 (289)
                      +..+|.+|.+++.             +.|.+++         +.+|.. + ++++|..     .++.+.|.+.+++.-
T Consensus        81 v~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~  158 (164)
T d2ucza_          81 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI  158 (164)
T ss_dssp             BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             EcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            9999999999874             3475553         333332 1 2333322     267788888887743

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=99.88  E-value=8.3e-23  Score=161.82  Aligned_cols=127  Identities=20%  Similarity=0.321  Sum_probs=105.9

Q ss_pred             CCCChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccc
Q psy621            3 QVPTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENL   80 (289)
Q Consensus         3 ~~~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~   80 (289)
                      |+++..+.|||+|||++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|.+.+  +++||+++|+++|.++++
T Consensus         1 ~~~~~~~~kRl~kEl~~l~~~~~~gi~v~p-~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   79 (151)
T d1zdna1           1 ENLPPHIIRLVYKEVTTLTADPPDGIKVFP-NEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIF   79 (151)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCC
T ss_pred             CCCCHHHHHHHHHHHHHHHhCCCCCeEEEE-cCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCC
Confidence            468899999999999999999999999996 77899999999999999999999886655  899999999999999999


Q ss_pred             ccceeccceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHH
Q psy621           81 TKTFEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLND  130 (289)
Q Consensus        81 ~~~~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~  130 (289)
                      ||++...|.+|.+...+.|.+++         +++|.. + ++++|..     .++.+.|.+.+++
T Consensus        80 HPnI~~~G~ic~~~l~~~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~  145 (151)
T d1zdna1          80 HPNVGANGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARL  145 (151)
T ss_dssp             CTTBCTTSBBCHHHHTTTCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHH
T ss_pred             CceecCCCCcccccccccCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHH
Confidence            99999999999999999998874         233322 1 2333322     2466777777776

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=99.88  E-value=9.6e-23  Score=162.24  Aligned_cols=84  Identities=37%  Similarity=0.804  Sum_probs=77.5

Q ss_pred             chHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCC
Q psy621          167 GNMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPD  246 (289)
Q Consensus       167 ~~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~  246 (289)
                      ....+|+++|++++.++...++.+.                                     ++++|+++|+++|.||+|
T Consensus         8 ~~~~kRl~kEl~~l~~~~~~gi~~~-------------------------------------p~~~dl~~W~~~i~Gp~~   50 (156)
T d2e2ca_           8 HSVSKRLQQELRTLLMSGDPGITAF-------------------------------------PDGDNLFKWVATLDGPKD   50 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEE-------------------------------------ESSSCTTEEEEEEECCTT
T ss_pred             chHHHHHHHHHHHHhHCCCCCEEEE-------------------------------------ECCCcccEEEEEEEcCCc
Confidence            3456799999999999988888776                                     688999999999999999


Q ss_pred             CCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          247 TLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       247 t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |||+||+|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus        51 t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~   91 (156)
T d2e2ca_          51 TVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGN   91 (156)
T ss_dssp             STTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             cccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCCCCCC
Confidence            99999999999999999999999999999999999998764

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=99.88  E-value=9.2e-23  Score=161.33  Aligned_cols=82  Identities=35%  Similarity=0.743  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|
T Consensus         2 ~~~kRi~~E~~~l~~~~~~gi~~~-------------------------------------~~~~n~~~w~~~i~gp~~t   44 (148)
T d1y6la_           2 TSAKRIQKELAEITLDPPPNCSAG-------------------------------------PKGDNIYEWRSTILGPPGS   44 (148)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ESSSCTTEEEEEEECCTTS
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEE-------------------------------------ECCcccceeceEEECCCCC
Confidence            356899999999999988888876                                     6889999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      ||+||+|+++|.||++||.+||+|+|.|+||||||+.+|
T Consensus        45 ~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~~~G   83 (148)
T d1y6la_          45 VYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQG   83 (148)
T ss_dssp             TTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTC
T ss_pred             CcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceECCCC
Confidence            999999999999999999999999999999999999865

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=99.88  E-value=6.4e-23  Score=162.40  Aligned_cols=84  Identities=30%  Similarity=0.712  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      +.+|+++|++++.++.+.++++..                                    ++++|+++|+++|.||++||
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~------------------------------------~~~~~~~~w~~~I~gp~~t~   45 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEF------------------------------------VSESDIHHLKGTFLGPPGTP   45 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEE------------------------------------SCSSCSSEEEEEEECCTTST
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEE------------------------------------CCCCchhEEEEEEEcCCCCC
Confidence            457999999999998777777641                                    56789999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCCc
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ  288 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~~  288 (289)
                      |+||+|+++|.||++||++||+|+|.|+||||||+..||.
T Consensus        46 y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~~~~   85 (149)
T d1fzya_          46 YEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGA   85 (149)
T ss_dssp             TTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTCC
T ss_pred             CCCCceeEEEEecCCcccCCcEEEecCCCcCCcccCCcce
Confidence            9999999999999999999999999999999999987763

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=99.88  E-value=7.6e-23  Score=162.80  Aligned_cols=125  Identities=23%  Similarity=0.425  Sum_probs=103.5

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      |++|.|||++||++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||++||.++|.+.++|||
T Consensus         1 st~A~kRl~~El~~l~~~~~~gi~~~p-~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   79 (153)
T d1ayza_           1 STPARRRLMRDFKRMKEDAPPGVSASP-LPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPN   79 (153)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHhHCCCCCEEEEE-CCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccC
Confidence            468899999999999999999999997 66799999999999999999999886655  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      +...|.+|.++..+.|.+++         +.+|...  ++++|..     .++.+.|.+.++++
T Consensus        80 I~~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~  143 (153)
T d1ayza_          80 VYANGEICLDILQNRWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKET  143 (153)
T ss_dssp             BCTTSBBCCGGGTTTCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCCccccccccccCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998863         3333321  2233322     24667787777763

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=99.88  E-value=8e-23  Score=162.66  Aligned_cols=83  Identities=31%  Similarity=0.743  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      .+.+|+++|++++.++.+.++.+.                                     +.++|+++|+++|.||++|
T Consensus         3 ~A~kRl~~El~~l~~~~~~gi~~~-------------------------------------p~~~n~~~w~~~i~gp~~t   45 (153)
T d1ayza_           3 PARRRLMRDFKRMKEDAPPGVSAS-------------------------------------PLPDNVMVWNAMIIGPADT   45 (153)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHhHCCCCCEEEE-------------------------------------ECCCcHHhHhheeeCCCCC
Confidence            456899999999999988888876                                     6788999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ||+||+|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus        46 py~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~~~G~   85 (153)
T d1ayza_          46 PYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVYANGE   85 (153)
T ss_dssp             TTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSB
T ss_pred             ccCCCEEEEEEecCccccCCCCeeeeccCCCccCCCCCCc
Confidence            9999999999999999999999999999999999988763

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=160.94  Aligned_cols=83  Identities=34%  Similarity=0.620  Sum_probs=76.4

Q ss_pred             hHHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          168 NMEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      ...+|+++|++++.++.+-++.+.                                     ++++|+++|+++|.||+||
T Consensus         6 ~~~kRl~kEl~~l~~~~~~gi~v~-------------------------------------p~~~dl~~w~~~i~gp~~t   48 (151)
T d1zdna1           6 HIIRLVYKEVTTLTADPPDGIKVF-------------------------------------PNEEDLTDLQVTIEGPEGT   48 (151)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEE-------------------------------------ECSSCTTEEEEEEECCTTS
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEE-------------------------------------EcCcchheeEEEEecCCCc
Confidence            456799999999999877778776                                     6889999999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        49 py~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~   88 (151)
T d1zdna1          49 PYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGANGE   88 (151)
T ss_dssp             TTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTSB
T ss_pred             CccCCceeeeeecCCCCCCCCceeecCCCCCCceecCCCC
Confidence            9999999999999999999999999999999999988653

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=99.88  E-value=1.2e-22  Score=161.75  Aligned_cols=124  Identities=19%  Similarity=0.255  Sum_probs=101.8

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccce
Q psy621            7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTF   84 (289)
Q Consensus         7 ~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~   84 (289)
                      +++.+||+||+++|++++++|+.+.+ +++|+++|.+.|.||++|+|+||.|++.+  +++||++||+++|.+.++||++
T Consensus         1 m~~~~Rl~kE~~~l~~~~~~gi~~~p-~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV   79 (154)
T d1yh2a1           1 MQRASRLKRELHMLATEPPPGITCWQ-DKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   79 (154)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEE-SSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             CcHHHHHHHHHHHHHHCcCCCEEEEE-CCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCc
Confidence            46889999999999999999999997 77899999999999999999999886655  8999999999999999999999


Q ss_pred             eccceeeCcccc----CccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621           85 EASSFISAPLYT----ESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        85 e~~~~~~~~~~~----~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      ..+|.+|.+++.    +.|.+++         +.+|...  +++.|..     ..+.+.|.+.++++
T Consensus        80 ~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~  146 (154)
T d1yh2a1          80 DSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQW  146 (154)
T ss_dssp             CTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999885    5788875         3333321  2333322     14567787777763

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=99.88  E-value=7.6e-23  Score=162.30  Aligned_cols=124  Identities=20%  Similarity=0.324  Sum_probs=104.7

Q ss_pred             hHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccce
Q psy621            7 SSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTF   84 (289)
Q Consensus         7 ~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~   84 (289)
                      +++.|||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.+  +++||.+||+++|.+.++||++
T Consensus         2 ~~~~rRl~~E~~~l~~~~~~g~~~~p-~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI   80 (152)
T d1jata_           2 ASLPKRIIKETEKLVSDPVPGITAEP-HDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNI   80 (152)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEE-cCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcC
Confidence            45678999999999999999999997 67899999999999999999999876555  8999999999999999999999


Q ss_pred             eccceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           85 EASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        85 e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      ..+|.+|.++....|.+++         +.+|.. + ++++|..+     ++.+.|.+.++++
T Consensus        81 ~~~G~icl~~~~~~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~  143 (152)
T d1jata_          81 DRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREW  143 (152)
T ss_dssp             CTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCCeeeccccccCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999999998885         333432 1 34445443     6777888888874

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.1e-23  Score=157.48  Aligned_cols=95  Identities=24%  Similarity=0.431  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHhhhCCCCCeEEEe-cCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceeccc--cccc
Q psy621            9 ALRALSMEYKSLQEEPVEGFRVKL-VNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIEN--LTKT   83 (289)
Q Consensus         9 ~~~Rl~kE~~~l~~~~~~g~~~~~-~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~~--~~~~   83 (289)
                      +.|||+||+++|++++++|+.+.+ ..+||+++|++.+.||++|+|+||.|++.  ++++||++||+++|.+++  +|||
T Consensus         4 ~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpn   83 (117)
T d2a7la1           4 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH   83 (117)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCcccccc
Confidence            469999999999999999998864 24578999999999999999999988655  589999999999999876  8999


Q ss_pred             eeccceeeCccccCccchHH
Q psy621           84 FEASSFISAPLYTESWLRSF  103 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y  103 (289)
                      +..+|.+|.+++.+.|.+++
T Consensus        84 v~~~G~iCl~~l~~~Wsp~~  103 (117)
T d2a7la1          84 VYSNGHICLSILTEDWSPAL  103 (117)
T ss_dssp             BCTTCBBCCGGGTTTCCTTS
T ss_pred             CcCCCeEEeecCcCCCCCcC
Confidence            99999999999999999875

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=99.87  E-value=2.1e-22  Score=159.14  Aligned_cols=123  Identities=22%  Similarity=0.382  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEE--EcCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAI--IEGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~--v~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      .|.|||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|++.  ++++||++||+++|.+.++||++.
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~-~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   79 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGP-VGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   79 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEE-CCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeEC
Confidence            3789999999999999999999996 6779999999999999999999988655  489999999999999999999999


Q ss_pred             ccceeeCccccCccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621           86 ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        86 ~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      .+|.+|+++..+.|.+++         +.++...  +++.|..     .++.+.|.+.++++
T Consensus        80 ~~G~iCl~~l~~~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~  141 (147)
T d1z2ua1          80 SNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREW  141 (147)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCEeeehhcccCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999998774         3333321  2222222     25667787777763

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=99.87  E-value=1.8e-22  Score=159.19  Aligned_cols=125  Identities=18%  Similarity=0.269  Sum_probs=101.9

Q ss_pred             CChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            5 PTSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      |++.|.+||+||++++++++++|+.+.+ .++|+++|.+.|.||++|+|+||.|++.+  +++||..||+++|.+.++||
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p-~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   79 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKP-VSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHP   79 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEE-CSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCT
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEE-CCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccC
Confidence            5779999999999999999999999997 66799999999999999999999886655  89999999999999999999


Q ss_pred             cee-ccceeeCcccc--CccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHH
Q psy621           83 TFE-ASSFISAPLYT--ESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLND  130 (289)
Q Consensus        83 ~~e-~~~~~~~~~~~--~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~  130 (289)
                      ++. .+|.+|.+++.  +.|.+++         +++|...  ++++|..     .++++.|.+.++.
T Consensus        80 nV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~  146 (148)
T d1yrva1          80 NVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRL  146 (148)
T ss_dssp             TBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHH
T ss_pred             ceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHh
Confidence            998 57999999864  5787773         3333321  2333332     2667777777766

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.87  E-value=3.1e-22  Score=155.08  Aligned_cols=86  Identities=22%  Similarity=0.384  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHhCC-CCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCC
Q psy621          169 MEKEMVKELRRIAHESS-LNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDT  247 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~-~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t  247 (289)
                      +..|+++|++++.++.+ ..+...                                  +...++.|+++|+++|.||++|
T Consensus         5 ~~~RL~kEl~~~~k~~~~~~~~~~----------------------------------~~~~dd~~l~~W~~~i~Gp~~t   50 (136)
T d1jatb_           5 RNFRLLEELEKGEKGFGPESCSYG----------------------------------LADSDDITMTKWNGTILGPPHS   50 (136)
T ss_dssp             HHHHHHHHHHHHHC----CCEEEE----------------------------------ESSTTCTTCCEEEEEEECCSSS
T ss_pred             hHHHHHHHHHHHhccCCCCcEEEe----------------------------------ecCCCCCceeEEEEEEECCCCC
Confidence            45799999999999743 333221                                  1223444699999999999999


Q ss_pred             CCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCCc
Q psy621          248 LYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ  288 (289)
Q Consensus       248 ~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~~  288 (289)
                      ||+||+|+++|.||++||++||+|+|.|++|||||+.++|.
T Consensus        51 py~gg~f~~~i~fp~~YP~~PP~v~f~t~i~HpnV~~~~G~   91 (136)
T d1jatb_          51 NHENRIYSLSIDCGPNYPDSPPKVTFISKINLPCVNPTTGE   91 (136)
T ss_dssp             TTTTCEEEEEEECCTTTTTSCCEEEESBCCCCTTBCTTTCB
T ss_pred             hhhcCEEEEEEEecCCCCCCCCEEEEeccccccccccCCCe
Confidence            99999999999999999999999999999999999987763

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=99.87  E-value=2.7e-22  Score=157.94  Aligned_cols=126  Identities=21%  Similarity=0.271  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      ++.|||+||+++|++++++|+.+.+ .++|+++|++.|.||++|+|+||.|.+.|  +++||+++|+++|.+.++||++.
T Consensus         1 p~~kRl~~El~~l~~~~~~~i~~~~-~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   79 (146)
T d1i7ka_           1 PVGKRLQQELMTLMMSGDKGISAFP-ESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVD   79 (146)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEE-ETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBC
T ss_pred             CHHHHHHHHHHHHhhCCCCCEEEEE-cCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCC
Confidence            3689999999999999999999986 67899999999999999999999886655  79999999999999999999999


Q ss_pred             ccceeeCccccCccchHH---------HHHhhhc--ccccccC----CCchhhHHHHhHHhhcc
Q psy621           86 ASSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVT----IDTREGFLKTLNDLWLF  134 (289)
Q Consensus        86 ~~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~----~~~~~~F~~~l~~~~~~  134 (289)
                      .+|.+|.++..+.|.+++         +++|...  ++++|..    ..+.+.|.+.+++...+
T Consensus        80 ~~G~icl~~l~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~n~~~f~k~~~~~~~K  143 (146)
T d1i7ka_          80 TQGNISLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTAFKKYLQETYSK  143 (146)
T ss_dssp             TTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTTSHHHHHHHHHHHHHT
T ss_pred             CCCccccccccccCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhhCHHHHHHHHHHHHHc
Confidence            999999999999998885         2333321  2333322    25667788888875543

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=99.87  E-value=6e-23  Score=161.63  Aligned_cols=80  Identities=35%  Similarity=0.717  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      +|+++|++++.++...++.+.                                    +.+++|+++|+++| ||++|||+
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~------------------------------------~~~~~n~~~w~~~i-gp~~tpY~   44 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNI------------------------------------QVDEANLLTWQGLI-VPDNPPYD   44 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEE------------------------------------CSSCSSSSEEEEEE-CCCSSSCC
T ss_pred             HHHHHHHHHHHhCCCCCeEEE------------------------------------ECCCCcceEEEEEE-CCCCcCcc
Confidence            578899998888766566554                                    25778999999998 99999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ||+|+++|.||++||++||+|+|.|+||||||+.+|+
T Consensus        45 gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~   81 (144)
T d1c4zd_          45 KGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQ   81 (144)
T ss_dssp             SCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTTCB
T ss_pred             CCEEEEEEEecCcccCCCceeeccCCCCCcCCccCCc
Confidence            9999999999999999999999999999999998775

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.87  E-value=2.9e-22  Score=160.17  Aligned_cols=59  Identities=41%  Similarity=0.930  Sum_probs=56.1

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +.++|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++|||||+..+|
T Consensus        38 ~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~F~t~i~HPni~~~~G   96 (161)
T d2f4za1          38 IVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTG   96 (161)
T ss_dssp             EETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTC
T ss_pred             ecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEEecCCCCCCceECCCC
Confidence            46789999999999999999999999999999999999999999999999999988766

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=99.86  E-value=7.9e-22  Score=155.97  Aligned_cols=121  Identities=21%  Similarity=0.335  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceecc
Q psy621           10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEAS   87 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~   87 (289)
                      .|||+||+++|++++++|+.+.+ +++|+++|++.|.||++|+|+||.|++.|  +++||++||+++|.+.++||++..+
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p-~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~   82 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEP-DESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKL   82 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEE-CSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEE-CCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCC
Confidence            48999999999999999999997 77899999999999999999999876554  8999999999999999999999999


Q ss_pred             ceeeCccccCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHh
Q psy621           88 SFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        88 ~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      |.+|.+++.+.|.+++         +.+|.. + ++++|..+     ++.+.|.+.++++
T Consensus        83 G~icl~~l~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~  142 (149)
T d1j7db_          83 GRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAW  142 (149)
T ss_dssp             CBBCCGGGTTSCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHH
T ss_pred             CcEehHHhcCCCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999996653         344432 1 34444433     5777888888874

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=99.86  E-value=3.2e-22  Score=159.26  Aligned_cols=87  Identities=31%  Similarity=0.544  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      +.+|+++|++++.++.+.++.+....                                .+...+|+++|+++|.||+|||
T Consensus         3 a~~Rl~~E~~~~~~~~~~g~~~~p~~--------------------------------~~~~~~n~~~W~~~i~gp~gtp   50 (156)
T d2uyza1           3 ALSRLAQERKAWRKDHPFGFVAVPTK--------------------------------NPDGTMNLMNWECAIPGKKGTP   50 (156)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCEEEEEE--------------------------------CTTSCEEEEEEEEEEECCTTST
T ss_pred             HHHHHHHHHHHHHHCCCCCeEEEecC--------------------------------CCCCCCcccEEEEEEEcCCCCC
Confidence            45799999999999988777765100                                0012349999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      |+||+|+++|.||++||.+||+|+|.|+||||||+.+|.
T Consensus        51 Y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~G~   89 (156)
T d2uyza1          51 WEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGT   89 (156)
T ss_dssp             TTTCEEEEEEECCTTTTSSCCEEEESSCCCSTTBCTTSB
T ss_pred             ccCCEEEEEEeCCccccCCCceeeeccccccccccccce
Confidence            999999999999999999999999999999999998764

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=99.86  E-value=5.8e-22  Score=156.86  Aligned_cols=124  Identities=19%  Similarity=0.360  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      ++.|||+||+++|++++++|+.+.+.+++|+++|.+.|.||++|+|+||.|++.+  +++||++||+++|.+.++||++.
T Consensus         1 s~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~   80 (149)
T d1fzya_           1 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   80 (149)
T ss_dssp             CHHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             CHHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCccc
Confidence            3689999999999999999999987788899999999999999999999886655  89999999999999999999998


Q ss_pred             c-cceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           86 A-SSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        86 ~-~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      . .+.+|.++..+.|.+++         +++|.. + ++++|..     .++.+.|.+.++++
T Consensus        81 ~~~~~~~~~~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~  143 (149)
T d1fzya_          81 SVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALW  143 (149)
T ss_dssp             TTTCCBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCcceeechhhcccCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHH
Confidence            6 66788888889998874         333332 1 3343332     25778888888874

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=6.5e-22  Score=157.29  Aligned_cols=83  Identities=35%  Similarity=0.741  Sum_probs=72.2

Q ss_pred             hHHHHHHHHHHHHHHhC---CCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCC
Q psy621          168 NMEKEMVKELRRIAHES---SLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGP  244 (289)
Q Consensus       168 ~~~~~~~~~~r~ia~~~---~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp  244 (289)
                      ...+|+++|++++.+..   ...+.+.                                     +.++|+++|+++|.||
T Consensus         4 ~a~~Rl~kE~~~l~~~~~~~~~~i~~~-------------------------------------~~~~n~~~w~~~i~gp   46 (154)
T d2bepa1           4 IAVQRIKREFKEVLKSEETSKNQIKVD-------------------------------------LVDENFTELRGEIAGP   46 (154)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHTTSEEEE-------------------------------------ECSSSSSEEEEEEECC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCcEEEE-------------------------------------cCCCChhheEeeEecC
Confidence            35678999999987652   2344443                                     5788999999999999


Q ss_pred             CCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          245 PDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       245 ~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ++|||+||+|+++|.||++||++||+|+|.|++|||||+..+|
T Consensus        47 ~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~~g   89 (154)
T d2bepa1          47 PDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTG   89 (154)
T ss_dssp             TTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTTC
T ss_pred             ccccccCCeeEEEEeccccccCCCCcceecccCCCCCeeCCCC
Confidence            9999999999999999999999999999999999999998666

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.86  E-value=6.5e-22  Score=148.01  Aligned_cols=91  Identities=16%  Similarity=0.220  Sum_probs=84.9

Q ss_pred             HHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc-cccceeccc
Q psy621           12 ALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN-LTKTFEASS   88 (289)
Q Consensus        12 Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~-~~~~~e~~~   88 (289)
                      ||+||+++|++++++|+.+.+ +++|+++|++.+.||++|+|+||.|++.+  +++||++||+++|.++. +||++..+|
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~-~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G   80 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDV-HPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNG   80 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEE-CTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTS
T ss_pred             HHHHHHHHHHhCCCCCEEEEE-cCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCC
Confidence            999999999999999999996 78899999999999999999999886655  89999999999999985 899999999


Q ss_pred             eeeCccccCccchHH
Q psy621           89 FISAPLYTESWLRSF  103 (289)
Q Consensus        89 ~~~~~~~~~~Wl~~y  103 (289)
                      .+|.+++.+.|.+++
T Consensus        81 ~iCl~il~~~Wsp~~   95 (109)
T d2fo3a1          81 DICLSLLGDDYNPSL   95 (109)
T ss_dssp             BBCCGGGTTTCCTTC
T ss_pred             eEEeecccCCCCccC
Confidence            999999999998875

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=99.86  E-value=7e-22  Score=158.30  Aligned_cols=81  Identities=41%  Similarity=0.913  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCCC
Q psy621          171 KEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLYQ  250 (289)
Q Consensus       171 ~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y~  250 (289)
                      .++++|++++.++.+.++++.                                    |.+++|+++|+++|.||++|||+
T Consensus         3 ~~L~kE~~~l~~~~~~g~~v~------------------------------------~~~~~dl~~W~~~i~gp~~tpY~   46 (161)
T d1pzva_           3 LLLKKQLADMRRVPVDGFSAG------------------------------------LVDDNDIYKWEVLVIGPPDTLYE   46 (161)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEE------------------------------------ESSTTCTTEEEEEEECCTTSSCS
T ss_pred             hHHHHHHHHHHhCCCCCEEEE------------------------------------ECCCCCceEEEEEEECCcchhhc
Confidence            578999999999987787775                                    14567899999999999999999


Q ss_pred             CCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          251 GGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       251 ~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        47 gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~G~   83 (161)
T d1pzva_          47 GGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGN   83 (161)
T ss_dssp             SCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTTSB
T ss_pred             CCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCCCc
Confidence            9999999999999999999999999999999998765

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=99.86  E-value=6.8e-22  Score=151.68  Aligned_cols=85  Identities=33%  Similarity=0.629  Sum_probs=80.2

Q ss_pred             HHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceeccc
Q psy621           11 RALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEASS   88 (289)
Q Consensus        11 ~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~~   88 (289)
                      -||+||+++|++++++|+.+.+.+++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++|||+..+|
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G   81 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNG   81 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCC
Confidence            5899999999999999999998788899999999999999999999986655  89999999999999999999999999


Q ss_pred             eeeCccc
Q psy621           89 FISAPLY   95 (289)
Q Consensus        89 ~~~~~~~   95 (289)
                      .+|++++
T Consensus        82 ~iCl~iL   88 (125)
T d2awfa1          82 DVCISIL   88 (125)
T ss_dssp             BBCCGGG
T ss_pred             EEEeccc
Confidence            9999986

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.85  E-value=2.3e-21  Score=154.08  Aligned_cols=126  Identities=21%  Similarity=0.330  Sum_probs=102.2

Q ss_pred             CChHHHHHHHHHHHHhhhC---CCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccc
Q psy621            5 PTSSALRALSMEYKSLQEE---PVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIEN   79 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~---~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~   79 (289)
                      |++.|.+||+||+++|+++   ...++.+.+ .++|+++|.+.|.||++|+|+||.|.+.|  +++||++||+|+|.+.+
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~-~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   79 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDL-VDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKI   79 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEE-CSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEc-CCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccC
Confidence            6789999999999999876   457899986 67799999999999999999999876555  89999999999999999


Q ss_pred             cccceec-cceeeCccccCccchHH---------HHHhhhc--ccccccCC-----CchhhHHHHhHHh
Q psy621           80 LTKTFEA-SSFISAPLYTESWLRSF---------VSYVRRN--QDFLNVTI-----DTREGFLKTLNDL  131 (289)
Q Consensus        80 ~~~~~e~-~~~~~~~~~~~~Wl~~y---------~~~l~~~--~~~~n~~~-----~~~~~F~~~l~~~  131 (289)
                      +||++.. +|.+|.++..+.|.+++         +++|...  ++++|..+     ++++.|.+.++++
T Consensus        80 ~Hpni~~~~g~ic~~~~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~  148 (154)
T d2bepa1          80 WHPNISSVTGAICLDILKDQWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLW  148 (154)
T ss_dssp             CBTTBCTTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             CCCCeeCCCCccccccccccCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHH
Confidence            9999986 79999999999998763         2333221  23333322     5677788888774

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=99.85  E-value=1.3e-21  Score=155.06  Aligned_cols=81  Identities=31%  Similarity=0.625  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCCC
Q psy621          170 EKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTLY  249 (289)
Q Consensus       170 ~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~y  249 (289)
                      .+|+++|++++.++.+.++.+.                                    +.+++|+..|+++| ||++|||
T Consensus         2 ~~Rl~kE~~~l~~~~p~gi~~~------------------------------------~~~~~~~~~w~~ii-gp~~tpy   44 (150)
T d1wzva1           2 SMRVVKELEDLQKKPPPYLRNL------------------------------------SSDDANVLVWHALL-LPDQPPY   44 (150)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEE------------------------------------EECSSCTTEEEEEE-CCCSTTG
T ss_pred             HHHHHHHHHHHHHCCCCCEEEE------------------------------------ecCCCceEEEEEEE-CCCCCCc
Confidence            4689999999999877777654                                    24667999999866 9999999


Q ss_pred             CCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          250 QGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       250 ~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      +||+|+++|.||++||++||+|+|.|+||||||+++|+
T Consensus        45 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~~G~   82 (150)
T d1wzva1          45 HLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQ   82 (150)
T ss_dssp             GGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCTTCB
T ss_pred             cCceeeEEEecCcCCccCCceeeccCCCCcceECCCCC
Confidence            99999999999999999999999999999999998765

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=99.85  E-value=2.2e-21  Score=153.65  Aligned_cols=123  Identities=21%  Similarity=0.294  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceec
Q psy621            9 ALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEA   86 (289)
Q Consensus         9 ~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~   86 (289)
                      |.+||+||+++|++++++|+.+.+.+++|++.|.+.+ ||++|+|+||.|.+.|  +++||++||+|+|.++++||++..
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   79 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC
Confidence            5789999999999999999999887888999999865 8999999999886665  799999999999999999999999


Q ss_pred             cceeeCccc-cCccchHH---------HHHhhh-c-ccccccCC-----CchhhHHHHhHHhh
Q psy621           87 SSFISAPLY-TESWLRSF---------VSYVRR-N-QDFLNVTI-----DTREGFLKTLNDLW  132 (289)
Q Consensus        87 ~~~~~~~~~-~~~Wl~~y---------~~~l~~-~-~~~~n~~~-----~~~~~F~~~l~~~~  132 (289)
                      +|.+|.+++ .+.|.+++         +++|.. + ++++|..+     ++.+.|.+.++++-
T Consensus        80 ~G~icl~~l~~~~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~  142 (150)
T d1wzva1          80 NGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFT  142 (150)
T ss_dssp             TCBCCCGGGCTTTCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCcccccccccCCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHH
Confidence            999999987 46898873         222321 1 23333322     57788888888843

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=99.84  E-value=2.6e-21  Score=153.91  Aligned_cols=124  Identities=23%  Similarity=0.330  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCC----CCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccc
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVND----DNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLT   81 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~----~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~   81 (289)
                      .|.+||+||+++|+++++.|+.+.|..+    +|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.+.++|
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            5899999999999999999999987432    389999999999999999999886655  7999999999999999999


Q ss_pred             cceeccceeeCcccc--CccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           82 KTFEASSFISAPLYT--ESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        82 ~~~e~~~~~~~~~~~--~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      |++...|.+|.+.+.  +.|.+++         +.++.. + ++++|..     .++++.|.+.++++
T Consensus        82 PnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~  149 (156)
T d2uyza1          82 PNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQ  149 (156)
T ss_dssp             TTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             ccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999874  4798874         223321 1 2333332     25677788887774

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=99.84  E-value=5.1e-21  Score=153.22  Aligned_cols=122  Identities=28%  Similarity=0.557  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceecc
Q psy621           10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEAS   87 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~   87 (289)
                      ..||+||+++|++++++|+.+.+.+++|+++|++.|.||++|+|+||.|++.+  +.+||++||.|+|.+.++|||+...
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~   81 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKE   81 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTT
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCC
Confidence            57999999999999999999998777889999999999999999999876655  8999999999999999999999999


Q ss_pred             ceeeCcccc-------------CccchHH---------HHHhhhc--ccccccC-----CCchhhHHHHhHHh
Q psy621           88 SFISAPLYT-------------ESWLRSF---------VSYVRRN--QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        88 ~~~~~~~~~-------------~~Wl~~y---------~~~l~~~--~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      |.+|.+++.             +.|.+++         +.+|...  ++++|..     .++.+.|.+.++++
T Consensus        82 G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~  154 (161)
T d1pzva_          82 GNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQC  154 (161)
T ss_dssp             SBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHH
Confidence            999999874             3477663         3333321  2333322     25777788877774

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=99.84  E-value=1.8e-21  Score=153.02  Aligned_cols=93  Identities=22%  Similarity=0.396  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceecc
Q psy621           10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEAS   87 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~~   87 (289)
                      .|||+||+++|++++++|+.+.+.+++|+++|++.| ||++|+|+||.|.+.+  +++||++||+++|.+.++||++..+
T Consensus         1 ~rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~   79 (144)
T d1c4zd_           1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEK   79 (144)
T ss_dssp             CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccC
Confidence            389999999999999999998877888999999988 9999999999876655  8999999999999999999999999


Q ss_pred             ceeeCcccc-CccchHH
Q psy621           88 SFISAPLYT-ESWLRSF  103 (289)
Q Consensus        88 ~~~~~~~~~-~~Wl~~y  103 (289)
                      |.+|++.+. +.|.+++
T Consensus        80 G~icl~~l~~~~w~p~~   96 (144)
T d1c4zd_          80 GQVCLPVISAENWKPAT   96 (144)
T ss_dssp             CBBCCTTTSSSSCCTTC
T ss_pred             CccccccccCCCCCCcc
Confidence            999999976 5687764

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.83  E-value=6.5e-21  Score=151.89  Aligned_cols=81  Identities=23%  Similarity=0.520  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHhCCCCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeCCCCCC
Q psy621          169 MEKEMVKELRRIAHESSLNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFGPPDTL  248 (289)
Q Consensus       169 ~~~~~~~~~r~ia~~~~~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~gp~~t~  248 (289)
                      +.+|+++|++++.++...++++.                                     ++++|+++|+++|.||++||
T Consensus         2 A~kRl~kE~~~l~~~p~~g~~~~-------------------------------------p~~~n~~~w~~~i~Gp~~tp   44 (157)
T d2f4wa1           2 ATQRLKQDYLRIKKDPVPYICAE-------------------------------------PLPSNILEWHYVVRGPEMTP   44 (157)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEE-------------------------------------EETTEEEEEEEEEECCTTST
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEE-------------------------------------EcCcccceeeeEEECCCCcc
Confidence            56899999999999977777776                                     67889999999999999999


Q ss_pred             CCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCC
Q psy621          249 YQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGT  286 (289)
Q Consensus       249 y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~  286 (289)
                      |+||.|+++|.||++||++||+|+|.|+++|||++..+
T Consensus        45 y~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~g~~   82 (157)
T d2f4wa1          45 YEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNTRL   82 (157)
T ss_dssp             TTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTTSCB
T ss_pred             ccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCCCCe
Confidence            99999999999999999999999999999999997654

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.83  E-value=9.5e-21  Score=150.72  Aligned_cols=58  Identities=36%  Similarity=0.731  Sum_probs=55.3

Q ss_pred             CCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCCc
Q psy621          231 DDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTAQ  288 (289)
Q Consensus       231 ~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~~  288 (289)
                      ++|+.+|+++|.||++|||+||+|+++|.||++||.+||+|+|.|+||||||+..+|+
T Consensus        22 ~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~G~   79 (158)
T d1yf9a1          22 SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGS   79 (158)
T ss_dssp             CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTTCB
T ss_pred             CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCccc
Confidence            3699999999999999999999999999999999999999999999999999987764

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.81  E-value=1e-20  Score=150.49  Aligned_cols=58  Identities=29%  Similarity=0.601  Sum_probs=55.2

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                      ++++|+.+|+++| ||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+|.
T Consensus        26 ~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv~~~G~   83 (157)
T d1y8xa1          26 SDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGN   83 (157)
T ss_dssp             SSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTCB
T ss_pred             cCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccccccce
Confidence            5778999999988 999999999999999999999999999999999999999998764

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=99.80  E-value=5.8e-20  Score=146.62  Aligned_cols=122  Identities=18%  Similarity=0.290  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHhhh-------------CCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCccc
Q psy621            9 ALRALSMEYKSLQE-------------EPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNV   73 (289)
Q Consensus         9 ~~~Rl~kE~~~l~~-------------~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v   73 (289)
                      ..+||+||+++|++             .+..|+.+.++ +||+++|++.|.||++|+|+||.|.+.|  +++||++||+|
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V   80 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIV-GGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKM   80 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEE-TTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEec-CCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEE
Confidence            57899999999976             55679999974 5689999999999999999999886554  89999999999


Q ss_pred             ceeccccccceec-cceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHh
Q psy621           74 QNQIENLTKTFEA-SSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDL  131 (289)
Q Consensus        74 ~~~~~~~~~~~e~-~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~  131 (289)
                      +|.+.++||++.. +|.+|.++..+.|.+++         +.+|.. + +++.|..     .++.+.|.++++++
T Consensus        81 ~F~t~i~HPni~~~~G~icl~~l~~~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~  155 (161)
T d2f4za1          81 KFVTKIWHPNISSQTGAICLDILKHEWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLW  155 (161)
T ss_dssp             EESSCCCBTTBCTTTCBBCCGGGTTTCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             EecCCCCCCceECCCCCeecCcccccCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence            9999999999854 69999999999998874         222321 1 2333322     25667788877773

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=99.80  E-value=1.1e-19  Score=144.54  Aligned_cols=124  Identities=17%  Similarity=0.270  Sum_probs=99.8

Q ss_pred             ChHHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccc
Q psy621            6 TSSALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKT   83 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~   83 (289)
                      |+.|.+||+||+++|++.  +++.+...+++|+++|.+.| ||++++|+||.|.+.|  +++||.+||+|+|.+.++||+
T Consensus         1 ~~~a~~Rl~kEl~~l~~~--~~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPn   77 (157)
T d1y8xa1           1 ASAAQLRIQKDINELNLP--KTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN   77 (157)
T ss_dssp             CCHHHHHHHHHHHTCCCC--TTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             CCHHHHHHHHHHHHhCCC--CCCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCcc
Confidence            568999999999999764  46666656778999999988 8999999999876554  899999999999999999999


Q ss_pred             eeccceeeCccccCccchHH---------HHHhhh-c-ccccccC-----CCchhhHHHHhHHhh
Q psy621           84 FEASSFISAPLYTESWLRSF---------VSYVRR-N-QDFLNVT-----IDTREGFLKTLNDLW  132 (289)
Q Consensus        84 ~e~~~~~~~~~~~~~Wl~~y---------~~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~~  132 (289)
                      +..+|.+|.+...+.|.+++         ..+|.. + ++++|..     .++++.|.++++++.
T Consensus        78 v~~~G~ic~~~~~~~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~  142 (157)
T d1y8xa1          78 IDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSM  142 (157)
T ss_dssp             BCTTCBBCCGGGTTTCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             ccccceeeeeecccCCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHH
Confidence            99999999999999998874         222221 1 2333332     267888999988854

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.78  E-value=1.4e-19  Score=144.03  Aligned_cols=95  Identities=20%  Similarity=0.403  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccccee
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFE   85 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e   85 (289)
                      +|.|||+|||++|+++|++|+.+.+ +++|+++|.+.|.||++|+|+||.|++.+  +++||++||+|+|.+...|++..
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p-~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~   79 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEP-LPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN   79 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEE-ETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTT
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEE-cCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCC
Confidence            4899999999999999999999997 66799999999999999999999886655  89999999999999988777665


Q ss_pred             cccee-eCccccCccchHH
Q psy621           86 ASSFI-SAPLYTESWLRSF  103 (289)
Q Consensus        86 ~~~~~-~~~~~~~~Wl~~y  103 (289)
                      ..+.. |++...+.|.+++
T Consensus        80 g~~~~~~l~~~~~~Wsp~~   98 (157)
T d2f4wa1          80 TRLCLSITDFHPDTWNPAW   98 (157)
T ss_dssp             SCBC----------CCTTC
T ss_pred             CCeeeeeccccCCCCCccC
Confidence            44332 3334457798775

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.78  E-value=1.9e-19  Score=139.22  Aligned_cols=98  Identities=16%  Similarity=0.229  Sum_probs=81.6

Q ss_pred             ChHHHHHHHHHHHHhhhCC-CCCeEEEecCCC--CceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccc
Q psy621            6 TSSALRALSMEYKSLQEEP-VEGFRVKLVNDD--NLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENL   80 (289)
Q Consensus         6 ~~~~~~Rl~kE~~~l~~~~-~~g~~~~~~~~~--n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~   80 (289)
                      ..++.+||+|||++++|+. +.+++..+.++|  |+++|++.|.||++|+|+||.|++.+  +++||++||+++|.+.++
T Consensus         2 ~~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~   81 (136)
T d1jatb_           2 KVPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKIN   81 (136)
T ss_dssp             CCCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             CCchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEecccc
Confidence            3468899999999999975 556777765555  49999999999999999999986665  799999999999999999


Q ss_pred             ccceec-cceeeCcccc-CccchHH
Q psy621           81 TKTFEA-SSFISAPLYT-ESWLRSF  103 (289)
Q Consensus        81 ~~~~e~-~~~~~~~~~~-~~Wl~~y  103 (289)
                      ||++.. +|.+|.++.. +.|.+++
T Consensus        82 HpnV~~~~G~icl~~l~~~~Wsp~~  106 (136)
T d1jatb_          82 LPCVNPTTGEVQTDFHTLRDWKRAY  106 (136)
T ss_dssp             CTTBCTTTCBBCTTSHHHHTCCTTC
T ss_pred             ccccccCCCeEECCCCcccCcCccC
Confidence            999984 5899999754 6798774

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.77  E-value=6.6e-19  Score=136.89  Aligned_cols=96  Identities=20%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHHhhhCCCCCeEEEecC---CCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceecccccc
Q psy621            8 SALRALSMEYKSLQEEPVEGFRVKLVN---DDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTK   82 (289)
Q Consensus         8 ~~~~Rl~kE~~~l~~~~~~g~~~~~~~---~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~   82 (289)
                      .+.+||+|||+++++++++|+.+....   ++|+++|++.|.||++|+|+||.|++.+  +++||++||+++|.++++||
T Consensus         5 ~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~Hp   84 (139)
T d2a4da1           5 PRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMN   84 (139)
T ss_dssp             HHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCCT
T ss_pred             chhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcccc
Confidence            578999999999999999997766433   3379999999999999999999986665  79999999999999999999


Q ss_pred             ceeccceee-Cccc--cCccchHH
Q psy621           83 TFEASSFIS-APLY--TESWLRSF  103 (289)
Q Consensus        83 ~~e~~~~~~-~~~~--~~~Wl~~y  103 (289)
                      ++...+.+| ....  .+.|.+++
T Consensus        85 nV~~~~g~~~~~~l~~l~~Wsp~~  108 (139)
T d2a4da1          85 GVNSSNGVVDPRAISVLAKWQNSY  108 (139)
T ss_dssp             TBCTTTCBBCGGGSHHHHTCCTTC
T ss_pred             cCcCCCCEEcceecCcccCCCccC
Confidence            998776554 3322  24687664

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4e-19  Score=142.03  Aligned_cols=86  Identities=22%  Similarity=0.456  Sum_probs=70.5

Q ss_pred             CchHHHHHHHHHHHHHHhCC--CCeEeeccccccccchhhhcchhhhhhhhhceeeeEEeeeccccCCCCcceEEEEEeC
Q psy621          166 DGNMEKEMVKELRRIAHESS--LNVSVFHPYFVFFDQFELVRPTTIQSMLGGSVTMMFIRFRVKLVNDDNLFEWEVAIFG  243 (289)
Q Consensus       166 ~~~~~~~~~~~~r~ia~~~~--~~~~~~~~~~~~~DQ~~~i~~~tiq~~~~a~~~m~~v~~~~i~~~~~~~~~w~~~i~g  243 (289)
                      +..+.+|+++|++++.+...  .++....                                    +.++|+++|++.|.|
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~------------------------------------~~~dnl~~W~v~i~g   45 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVE------------------------------------LINDSLYDWHVKLQK   45 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEE------------------------------------EETTEEEEEEEEECC
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEee------------------------------------cCCCcccEEEEEEEe
Confidence            34567899999999976632  3333221                                    467799999999999


Q ss_pred             -CCCCCCCCCE-----------EEEEEEcCCCCCCCCCeEEEecCCcCCCCCCCCC
Q psy621          244 -PPDTLYQGGY-----------FKAHMKFPIDYPYSPPTIRFLTKVWHPNVYEGTA  287 (289)
Q Consensus       244 -p~~t~y~~g~-----------~~~~i~~~~~yP~~pP~v~f~t~i~hpnv~~~~~  287 (289)
                       |++|||+||.           |+++|.||++||++||+|+|.|++||||+...+|
T Consensus        46 ~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~PP~v~f~t~i~hpn~~~~~G  101 (162)
T d1zuoa1          46 VDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGG  101 (162)
T ss_dssp             CCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSSCCEEEEEESCEESTTBCGGG
T ss_pred             cCCCCchhcchhhhhcccCCceEEEEEECCCchhhhcceEEEEEEeeccccccCCc
Confidence             7899999986           9999999999999999999999999999655544

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.1e-18  Score=136.08  Aligned_cols=98  Identities=18%  Similarity=0.348  Sum_probs=82.5

Q ss_pred             CChHHHHHHHHHHHHhhhCCC--CC-eEEEecCCCCceEEEEEEeC-CCCCCccCcE-----------E--EEEEcCCCC
Q psy621            5 PTSSALRALSMEYKSLQEEPV--EG-FRVKLVNDDNLFEWEVAIFG-PPDTLYQGGY-----------F--KAIIEGELP   67 (289)
Q Consensus         5 ~~~~~~~Rl~kE~~~l~~~~~--~g-~~~~~~~~~n~~~w~~~i~g-p~~t~y~g~~-----------~--~v~v~~~yp   67 (289)
                      +|.+|.+||+|||++|++++.  .| +.+.+ .+||+++|++.+.| |++|+|++|.           |  .|.++++||
T Consensus         1 gs~~a~~RL~kEl~~l~k~~~~~~~~~~v~~-~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP   79 (162)
T d1zuoa1           1 GSVQASDRLMKELRDIYRSQSYKTGIYSVEL-INDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFP   79 (162)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEE-ETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTT
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCeEEeec-CCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchh
Confidence            378899999999999998775  34 45664 66799999999999 7899998763           5  556689999


Q ss_pred             CCCcccceeccccccc-eeccceeeCcccc-CccchHH
Q psy621           68 HWDVNVQNQIENLTKT-FEASSFISAPLYT-ESWLRSF  103 (289)
Q Consensus        68 ~~~P~v~~~~~~~~~~-~e~~~~~~~~~~~-~~Wl~~y  103 (289)
                      ++||.|+|.++++|++ +..+|.+|.++++ +.|.+++
T Consensus        80 ~~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~~WsP~~  117 (162)
T d1zuoa1          80 FDPPFVRVVLPVLSGGYVLGGGALCMELLTKQGWSSAY  117 (162)
T ss_dssp             SSCCEEEEEESCEESTTBCGGGBBCCGGGSTTTCCTTS
T ss_pred             hhcceEEEEEEeeccccccCCceeecccccCCCCCCcc
Confidence            9999999999999997 6778999999985 4698875

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.70  E-value=1e-17  Score=133.01  Aligned_cols=118  Identities=23%  Similarity=0.308  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEEEE--cCCCCCCCcccceeccccccceec-
Q psy621           10 LRALSMEYKSLQEEPVEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKAII--EGELPHWDVNVQNQIENLTKTFEA-   86 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v~v--~~~yp~~~P~v~~~~~~~~~~~e~-   86 (289)
                      .|||++|+++|.+++..   +.+  .||+++|.+.|.||++|+|+||.|.+.|  +++||.+||+++|.+.++||++.. 
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~--~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~   76 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYP--SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDER   76 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEE--CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTT
T ss_pred             chHHHHHHHHHhcCCCc---CCC--CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccC
Confidence            58999999999988854   444  4699999999999999999999886655  899999999999999999999965 


Q ss_pred             cceeeCccccCccchHHH----------HHhhh-c-ccccccC-----CCchhhHHHHhHHhh
Q psy621           87 SSFISAPLYTESWLRSFV----------SYVRR-N-QDFLNVT-----IDTREGFLKTLNDLW  132 (289)
Q Consensus        87 ~~~~~~~~~~~~Wl~~y~----------~~l~~-~-~~~~n~~-----~~~~~~F~~~l~~~~  132 (289)
                      +|.+|.+++.+.|.+++.          .++.. + ++++|..     .++.+.|.+.++++-
T Consensus        77 ~G~vcl~il~~~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~  139 (158)
T d1yf9a1          77 SGSVCLDVINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHV  139 (158)
T ss_dssp             TCBBCHHHHHHHCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             cccccccccccccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHH
Confidence            799999999888976631          12221 1 2233332     256778888887743

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4e-12  Score=98.36  Aligned_cols=59  Identities=19%  Similarity=0.219  Sum_probs=52.0

Q ss_pred             cCCCCcceEEEEEeCCCCCCCCCCEEEE--EEEcCCCCCCCCCeEEEecC-----CcCCCCCCCCC
Q psy621          229 VNDDNLFEWEVAIFGPPDTLYQGGYFKA--HMKFPIDYPYSPPTIRFLTK-----VWHPNVYEGTA  287 (289)
Q Consensus       229 ~~~~~~~~w~~~i~gp~~t~y~~g~~~~--~i~~~~~yP~~pP~v~f~t~-----i~hpnv~~~~~  287 (289)
                      ..+++...|.+.|.|+.+++|+||+|.+  .|.||++||.+||.|.|.+.     ++||||+.+|-
T Consensus        41 ~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~h~~V~~~G~  106 (141)
T d1s1qa_          41 VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDANGK  106 (141)
T ss_dssp             ECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECCSSSBCTTCB
T ss_pred             EeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccCCCeECCCCC
Confidence            4677889999999999999999999999  55589999999999988753     68999998774

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.76  E-value=9.8e-09  Score=79.79  Aligned_cols=59  Identities=20%  Similarity=0.222  Sum_probs=44.3

Q ss_pred             CCCCcceEEEEEeCCCCCCCCCCE---EEEEEEcCCCCCCCCCeEEEecC-----------CcCCCCCCCCCc
Q psy621          230 NDDNLFEWEVAIFGPPDTLYQGGY---FKAHMKFPIDYPYSPPTIRFLTK-----------VWHPNVYEGTAQ  288 (289)
Q Consensus       230 ~~~~~~~w~~~i~gp~~t~y~~g~---~~~~i~~~~~yP~~pP~v~f~t~-----------i~hpnv~~~~~~  288 (289)
                      .++....+.+.+.|.-..+|+||.   +.+.|-||++||..||.|.|.++           ++||||+++|--
T Consensus        47 ~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~~~~~~~i~~hp~Vd~~G~V  119 (152)
T d1uzxa_          47 HSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSLPIQEYIDSNGWI  119 (152)
T ss_dssp             CTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCSCC----CGGGGGBCTTSCB
T ss_pred             cCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccccCCCcccccCCCCCCCCcE
Confidence            345566677778898899999996   67788899999999999999875           579999998743

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=2.3e-08  Score=76.74  Aligned_cols=87  Identities=14%  Similarity=0.003  Sum_probs=67.0

Q ss_pred             HHHHHHHHhhhCC---CCCeEEEecCCCCceEEEEEEeCCCCCCccCcEEEE--E--EcCCCCCCCcccceecc-----c
Q psy621           12 ALSMEYKSLQEEP---VEGFRVKLVNDDNLFEWEVAIFGPPDTLYQGGYFKA--I--IEGELPHWDVNVQNQIE-----N   79 (289)
Q Consensus        12 Rl~kE~~~l~~~~---~~g~~~~~~~~~n~~~w~~~i~gp~~t~y~g~~~~v--~--v~~~yp~~~P~v~~~~~-----~   79 (289)
                      +..+|+.++.+.-   .++..+. ..+|+...|.+.+.|+.+++|+|+.|.+  .  ++.+||++||.+.+...     .
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f-~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~   96 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSY-VFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIK   96 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEE-ECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEEC
T ss_pred             hHHHHHHHHHHhCCCCCCccceE-EeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCcccc
Confidence            4455666665543   3555555 3667788999999999999999998765  4  48999999999977642     5


Q ss_pred             cccceeccceeeCccccCcc
Q psy621           80 LTKTFEASSFISAPLYTESW   99 (289)
Q Consensus        80 ~~~~~e~~~~~~~~~~~~~W   99 (289)
                      .|++++.+|.+|.+.+.+.|
T Consensus        97 ~h~~V~~~G~V~lp~L~~W~  116 (141)
T d1s1qa_          97 TGKHVDANGKIYLPYLHEWK  116 (141)
T ss_dssp             CSSSBCTTCBBCCHHHHTCC
T ss_pred             CCCeECCCCCCcchhhcCCC
Confidence            79999999999998875433

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=6.5e-06  Score=63.38  Aligned_cols=92  Identities=14%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHhhhCCCCCeEEE---ecCCCCceEEEEEEeCCCCCCccCcE---EEEE--EcCCCCCCCcccceecc---
Q psy621           10 LRALSMEYKSLQEEPVEGFRVK---LVNDDNLFEWEVAIFGPPDTLYQGGY---FKAI--IEGELPHWDVNVQNQIE---   78 (289)
Q Consensus        10 ~~Rl~kE~~~l~~~~~~g~~~~---~~~~~n~~~w~~~i~gp~~t~y~g~~---~~v~--v~~~yp~~~P~v~~~~~---   78 (289)
                      .+|+.+|+.++.++-+ ++...   ...+|......+.+.|.-..+|+|+.   +.+.  ++++||+.||.+.+...   
T Consensus        21 ~~~v~~dv~~~l~~y~-~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~   99 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFH-SLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFD   99 (152)
T ss_dssp             HHHHHHHHHHHHHHCT-TEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCC
T ss_pred             cchHHHHHHHHHHhCC-CCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCccc
Confidence            4678888888876533 33332   13455566788889999999999974   3444  48999999999999764   


Q ss_pred             --------ccccceeccceeeCccccCccchH
Q psy621           79 --------NLTKTFEASSFISAPLYTESWLRS  102 (289)
Q Consensus        79 --------~~~~~~e~~~~~~~~~~~~~Wl~~  102 (289)
                              +.|++++.+|.+|++.+.+.|-+.
T Consensus       100 ~~~~~~~i~~hp~Vd~~G~V~lp~L~~W~~~~  131 (152)
T d1uzxa_         100 MNTISSSLPIQEYIDSNGWIALPILHCWDPAA  131 (152)
T ss_dssp             SCC----CGGGGGBCTTSCBCCHHHHSCCTTT
T ss_pred             ccCCCcccccCCCCCCCCcEehHHhcCCCCcc
Confidence                    569999999999999976655443

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.62  E-value=2  Score=29.51  Aligned_cols=25  Identities=24%  Similarity=0.477  Sum_probs=21.8

Q ss_pred             CEEEEEEEcCCCCCCCCCeEEEecC
Q psy621          252 GYFKAHMKFPIDYPYSPPTIRFLTK  276 (289)
Q Consensus       252 g~~~~~i~~~~~yP~~pP~v~f~t~  276 (289)
                      ....+.+.+|++||..+|.+.....
T Consensus        52 ~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1          52 VCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             CEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             eEEEEEEEcCCCCCCCCCcEEeecc
Confidence            5688999999999999999988754