Psyllid ID: psy6242

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-
MASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKSLSRAYLDHQQVRSWTQSSDNVFGCP
ccccccHHHHcccccccccccccccccccccEEEccHHHHHHHHcccccccccccEEEEEcccccEEEEEEcccccccEEEEEccEEEEEcccccccccccccccccccccccccccccccccccHHHHccccccccccccHHHHcccHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccEEccccccccccEEEccccccccccccccEEEEEEEEEEEcccccEEEcccccccccHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHccccHHHHHHHHHHccccccccccHHHHccccccccHHHHccccccccccccccccccccccccccHHHHHHHHHHccEEcccccHHHHHHHHHccccccccccccccccccc
cccHHHHHHHHcccccccccccHHHcccccEEEEEcHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEccccccEEEEcccEEEEccccccccEEHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccEEcccccccccccEEcccEEEEcccccccEEEEEcccccEEcccccEEEEEEHHccccHHHHHHHHHcccEEEEEcccccccccccccEEEEEccccccccccEEEEEccccccccccEcccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHEHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHcccccccccccHHHHHHHHHHcccHHHHHHHHHcHHHHHHHHcHHHHHHHHHcccccEEcccccccccccc
MASIIEIEDEELMRCAVCRETALHkcsackevaycgkqhqkehwklhkpkckklpyeiksspllGRYLQATldlhpgdriaresplivgpklalaepiclgchkplnpnladnarcprcfwpacsarcsglsdahthapecAILKLGCETLLayndykyeaiLPLRCLilqrrspkkyQELKDMEAhmskrgpgtevYEEIDSIVKYLRSNfleklpgdvlddtsaKCLHWICGVievngvdigrYTQGLYSVICLmehnclpnakhsnmmqsKLFVFRDTHISTMytnalwgtqprreHLAITKYfncscercsdptelgTYFSAMKCLnehkdqgdcwilpvnpldndsdwtcgscsarlnarDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEamfhphhyhcYAVKHSLIQlygtqpgyayTQLSSSLLERKISyvmspnlkatdepiclgchkplnpnladnarcprcfwpacsarcsglsdahthapecAILKLGCETLLAYNDYKSLSRAYLdhqqvrswtqssdnvfgcp
masiieiedeelmRCAVCRETALHKCSACKEVAYCGKQhqkehwklhkpkckkLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQELKDmeahmskrgpgteVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTnalwgtqprREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKSLSRAYLDHqqvrswtqssdnvfgcp
MASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKSLSRAYLDHQQVRSWTQSSDNVFGCP
****IEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQR***********************EVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQ****VKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKSLSRAYLDHQQVRSW***********
**************CAVCRETALHKCSACKEVAYC*******************PYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNARCPRCFW***************HAPECAILKLGCETLLAYNDYKSLSRAYLDHQQ*****QS***VFGCP
MASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKSLSRAYLDHQQ***************
****IEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKSLSRAYLDHQQVRSWTQSSDNVFGCP
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MASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSPKKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKISYVMSPNLKATDEPICLGCHKPLNPNLADNARCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKSLSRAYLDHQQVRSWTQSSDNVFGCP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query541 2.2.26 [Sep-21-2011]
O46040462 Protein msta, isoform A O no N/A 0.513 0.601 0.284 3e-19
P83501448 Protein msta, isoform B O no N/A 0.508 0.613 0.273 8e-18
Q7XJS0480 Histone-lysine N-methyltr yes N/A 0.476 0.537 0.216 2e-07
Q6FTT0515 Potential protein lysine yes N/A 0.144 0.151 0.321 1e-05
>sp|O46040|MSTAA_DROME Protein msta, isoform A OS=Drosophila melanogaster GN=msta PE=2 SV=3 Back     alignment and function desciption
 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 92/323 (28%), Positives = 131/323 (40%), Gaps = 45/323 (13%)

Query: 56  YEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAE-PICLGCHKPLNPNLADNA 114
           + I SS + GR + AT D+  G+ I +E  L+ GP     +   C+ CH+ L P      
Sbjct: 57  WTISSSTVAGRGVFATRDIAAGELIFQERALVTGPTARKGQLSSCICCHETL-PQTGFLC 115

Query: 115 RCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRS 174
           R  RC  P C       SD+  H  EC   +      +   D + E + P+   IL    
Sbjct: 116 R-HRCTLPVCET----CSDSEEHQAECEHFRRWQPKDV---DAEQEQVNPMSLRILTAVR 167

Query: 175 ----PKKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLH 230
                K+ + L D     ++R    E+ +       +              D      L 
Sbjct: 168 VFHLGKEQRHLVDAMQANAERAYRREIIQAAQCFRNF-----------PTTDRVFMDQLF 216

Query: 231 WICGVIEVNGVDI-----GRYT--QGLYSVICLMEHNCLPNAKHSNMMQSKLFVFRDTH- 282
            I GV+  N  +      G  T  +GL+ +  +M H C PNA H      +L V R    
Sbjct: 217 RIVGVLNTNAFEAPCRSGGHETLLRGLFPLTAIMNHECTPNASHY-FENGRLAVVRAARD 275

Query: 283 ------ISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQ 336
                 I+T YT  LWG   R   L +TK+F C C RC D TE GTY SA+ C    ++Q
Sbjct: 276 IPKGGEITTTYTKILWGNLTRNIFLKMTKHFACDCVRCHDNTENGTYLSALFC----REQ 331

Query: 337 G-DCWILPVNPLDNDSDWTCGSC 358
           G    ++PV       DW C +C
Sbjct: 332 GCRGLVIPVQTRTLQPDWRCITC 354

Drosophila melanogaster (taxid: 7227)
>sp|P83501|MSTAB_DROME Protein msta, isoform B OS=Drosophila melanogaster GN=msta PE=4 SV=2 Back     alignment and function description
>sp|Q7XJS0|ASHR1_ARATH Histone-lysine N-methyltransferase ASHR1 OS=Arabidopsis thaliana GN=ASHR1 PE=2 SV=2 Back     alignment and function description
>sp|Q6FTT0|SET5_CANGA Potential protein lysine methyltransferase SET5 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SET5 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query541
242007168563 conserved hypothetical protein [Pediculu 0.798 0.767 0.408 3e-95
193683766533 PREDICTED: protein msta, isoform A-like 0.789 0.801 0.405 1e-94
91088857563 PREDICTED: similar to CG14590 CG14590-PA 0.774 0.744 0.432 1e-92
270011596575 hypothetical protein TcasGA2_TC005638 [T 0.774 0.728 0.432 1e-92
357620844517 hypothetical protein KGM_13877 [Danaus p 0.698 0.731 0.418 1e-86
170034227548 conserved hypothetical protein [Culex qu 0.772 0.762 0.384 7e-82
157135679565 hypothetical protein AaeL_AAEL003295 [Ae 0.778 0.745 0.391 3e-79
198461482549 GA13100 [Drosophila pseudoobscura pseudo 0.765 0.754 0.390 2e-75
350413549480 PREDICTED: protein msta, isoform B-like 0.704 0.793 0.386 2e-74
340710128480 PREDICTED: protein msta, isoform B-like 0.704 0.793 0.383 4e-74
>gi|242007168|ref|XP_002424414.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507814|gb|EEB11676.1| conserved hypothetical protein [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  355 bits (911), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 193/472 (40%), Positives = 291/472 (61%), Gaps = 40/472 (8%)

Query: 1   MASIIEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYEIKS 60
           M+++ E  D+ L +C +C     +KC++CK+V YC K+HQKE WK HK +C+  P+++KS
Sbjct: 1   MSTVGEEIDKLLEKCKICDVQTTNKCTSCKKVNYCCKEHQKEDWKNHKIQCR--PFQMKS 58

Query: 61  SPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCF 120
           S  LGR+L+AT  ++ G+ +  E P++ GP+    E +CLGC+K          +CP+C 
Sbjct: 59  SLELGRFLEATRRINAGEILFTEYPIVFGPRPE--EIVCLGCYK-----TEPEEKCPKCL 111

Query: 121 WPACSARCSGLSDAHTHAPECAILKLGC-----ETLLAYNDYKYEAILPLRCLILQRRSP 175
           WPACS+ C GL++   H  EC +L+L       ++ +  + ++++ I PLRCL+LQ+++P
Sbjct: 112 WPACSSSCPGLTNPDHHGSECFLLRLYTRNNQQQSYVTDDYFRFDVIFPLRCLLLQKKNP 171

Query: 176 KKYQELKDMEAHMSKRGPGTEVYEEI-DSIVKYLRSNFLEKLPGD-----------VLDD 223
             ++ +  ME+HM KRGP TE+Y++  + IVKYL  NF + L              + D+
Sbjct: 172 NGWKIITGMESHMKKRGPNTEIYKQTNEKIVKYLNDNFFKFLNDSGNREPDTEMILLPDE 231

Query: 224 TSAKCLHWICGVIEVNGVDI----GRYTQGLYSVICLMEHNCLPNAKH----SNMMQSKL 275
            + + LH ICG+I+VN ++I    G     LY    LMEHNCLPN +H    S   + K+
Sbjct: 232 RTPEILHKICGIIDVNSLEIQSPKGGTLNALYETAFLMEHNCLPNTRHIFQPSRRFKIKV 291

Query: 276 FVFRD----THISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLN 331
           F   D     HISTMYT+ALWGTQ R++HL  TK+F C C RC DP+E+GT  S +KCL 
Sbjct: 292 FANNDIQPGNHISTMYTHALWGTQQRQDHLRSTKHFICRCRRCGDPSEMGTNLSGLKCLA 351

Query: 332 EHKDQGDCW--ILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVK 389
              DQ  C    LP+ PLD+ + W C  C   L +  V    + +G++VD+++ + P ++
Sbjct: 352 PTVDQKICGGTQLPMAPLDSITVWQCDKCPTSLTSGQVSDFVNMIGDEVDRILNKQPKIE 411

Query: 390 SLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKIS 441
           SLE +L+KL+ + H +HYHCY+V HSL+QLYG QPGY   Q++  +LE+KI 
Sbjct: 412 SLETLLSKLKKLLHKNHYHCYSVMHSLVQLYGRQPGYLPHQMNDLMLEKKIG 463

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|193683766|ref|XP_001950081.1| PREDICTED: protein msta, isoform A-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|91088857|ref|XP_971416.1| PREDICTED: similar to CG14590 CG14590-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270011596|gb|EFA08044.1| hypothetical protein TcasGA2_TC005638 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|357620844|gb|EHJ72885.1| hypothetical protein KGM_13877 [Danaus plexippus] Back     alignment and taxonomy information
>gi|170034227|ref|XP_001844976.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167875488|gb|EDS38871.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|157135679|ref|XP_001663543.1| hypothetical protein AaeL_AAEL003295 [Aedes aegypti] gi|108881205|gb|EAT45430.1| AAEL003295-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|198461482|ref|XP_001362030.2| GA13100 [Drosophila pseudoobscura pseudoobscura] gi|198137355|gb|EAL26610.2| GA13100 [Drosophila pseudoobscura pseudoobscura] Back     alignment and taxonomy information
>gi|350413549|ref|XP_003490027.1| PREDICTED: protein msta, isoform B-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340710128|ref|XP_003393648.1| PREDICTED: protein msta, isoform B-like [Bombus terrestris] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query541
FB|FBgn0033061553 CG14590 [Drosophila melanogast 0.765 0.748 0.354 6.5e-67
FB|FBgn0036839530 CG18136 [Drosophila melanogast 0.776 0.792 0.316 1e-59
FB|FBgn0030257532 CG11160 [Drosophila melanogast 0.722 0.734 0.303 3.5e-52
FB|FBgn0033917513 CG8503 [Drosophila melanogaste 0.706 0.744 0.302 8.3e-51
FB|FBgn0034182488 CG9640 [Drosophila melanogaste 0.628 0.696 0.275 8.4e-26
FB|FBgn0034183498 CG9642 [Drosophila melanogaste 0.670 0.728 0.253 2.6e-21
FB|FBgn0053548462 msta "msta" [Drosophila melano 0.515 0.603 0.304 2.6e-20
FB|FBgn0030102500 CG12119 [Drosophila melanogast 0.652 0.706 0.253 8.7e-12
TAIR|locus:2827831480 SDG37 "SET domain group 37" [A 0.622 0.702 0.218 1.3e-08
UNIPROTKB|G4MYV3542 MGG_15522 "Uncharacterized pro 0.449 0.448 0.246 5.3e-07
FB|FBgn0033061 CG14590 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 161/454 (35%), Positives = 239/454 (52%)

Query:    15 CAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKCKKLPYE----------IKSSPLL 64
             C VC   A   C+ CK V YC ++HQK+HW  HK +C+    E          +  +   
Sbjct:     7 CPVCGVAASQACTRCKMVRYCDREHQKQHWPQHKRRCRPFSEEQDAELGRYLKVTQNIAA 66

Query:    65 GRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWPAC 124
             G+ +     L  G +      L    K A   P C+GC+ P    L  + +C RC WP C
Sbjct:    67 GQIVFIEEPLVVGPKWY----LSDADKEASNVP-CVGCYTPCR--LGKH-QCRRCRWPVC 118

Query:   125 SARCS--GLSDAHTHAPECAILKLGCETLLAYNDY-KYEAILPLRCLILQRRSPKKYQEL 181
             SA C    +  +       +  +    +L   NDY + +A+L L+CL+LQR+SP K+  L
Sbjct:   119 SAGCKHESMECSVLSLGSGSPTRADARSL---NDYFRGDALLVLKCLLLQRQSPTKWSAL 175

Query:   182 KDMEAHMSKRGPGTEVYEEIDS-IVKYLRSNFLEKLPG---DVLDDTSAKCLHWICGVIE 237
              +M++H  +R  GT++YEE +  +V YL+  FL +L     ++L D   + LH +CG+IE
Sbjct:   176 LEMQSHEEER-KGTDLYEEAEKRVVTYLQKRFLCRLKQTNPNLLTDCGPEMLHRLCGIIE 234

Query:   238 VNGVDI----GRYTQGLYSVICLMEHNCLPNA--KHSNMMQSKLF-----VFRDTHISTM 286
              N + I    G    GL+   C+MEH C PN   +  N  Q         + +  H+   
Sbjct:   235 TNFMVIELPSGVELSGLFRQACMMEHACQPNCDFQFDNKTQQVAVRAGCDLRKGDHLRIT 294

Query:   287 YTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNP 346
             YTN LWGTQ R+ HL +TK+F+C C RC DPTE GTY SA+ CL +         LPV+P
Sbjct:   295 YTNILWGTQLRQHHLRLTKHFSCRCSRCLDPTEYGTYISALTCLGDVNQTCGGTHLPVDP 354

Query:   347 LDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHH 406
             LD ++ W C +C   ++   V  + S + EQV+ L+   P+   +E +L +L  M HP+H
Sbjct:   355 LDENTQWKCDTCPMIVDGAYVAELQSHMTEQVEGLLAGCPSANQVELLLARLTHMLHPNH 414

Query:   407 YHCYAVKHSLIQLYGTQPGYAYTQLSSSLLERKI 440
             +H + +KH+LIQLYG + G     LS++ LERK+
Sbjct:   415 FHTFNLKHTLIQLYGNEAGLELGVLSNTQLERKL 448
GO:0008270 "zinc ion binding" evidence=IEA
GO:0010629 "negative regulation of gene expression" evidence=ISS
GO:0042826 "histone deacetylase binding" evidence=ISS
FB|FBgn0036839 CG18136 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030257 CG11160 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0033917 CG8503 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0034182 CG9640 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0034183 CG9642 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0053548 msta "msta" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0030102 CG12119 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
TAIR|locus:2827831 SDG37 "SET domain group 37" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4MYV3 MGG_15522 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
pfam0175339 pfam01753, zf-MYND, MYND finger 6e-08
>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger Back     alignment and domain information 
 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 19/39 (48%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 15 CAVC--RETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
          CAVC      L +CS CK V YC K+ QK  W  HK +C
Sbjct: 1  CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 541
KOG2084|consensus482 99.91
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 99.02
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 98.77
KOG1710|consensus396 98.3
smart00317116 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) 98.17
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 97.72
KOG2589|consensus453 96.94
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 96.17
KOG2061|consensus362 95.98
COG2940480 Proteins containing SET domain [General function p 95.84
KOG4442|consensus 729 95.52
KOG1080|consensus1005 95.51
KOG3612|consensus588 95.37
PF1382455 zf-Mss51: Zinc-finger of mitochondrial splicing su 93.33
KOG1710|consensus396 93.25
KOG1337|consensus472 90.11
KOG1141|consensus1262 90.08
KOG1082|consensus364 89.47
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 89.26
PLN03158396 methionine aminopeptidase; Provisional 88.11
PF00856162 SET: SET domain; InterPro: IPR001214 The SET domai 86.62
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 86.61
KOG2857|consensus157 83.46
>KOG2084|consensus Back     alignment and domain information 
Probab=99.91  E-value=1.7e-23  Score=226.63  Aligned_cols=390  Identities=22%  Similarity=0.308  Sum_probs=240.8

Q ss_pred             hhcccccccCCCCCCcc-ccCCcccchhhccccCCCCCccccccCCeeeccccCCCCcccccccCCCCCCCCCCcCCCCC
Q psy6242          41 KEHWKLHKPKCKKLPYE-IKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRC  119 (541)
Q Consensus        41 ~~~w~~Hk~~C~~~~~~-i~~s~~~GR~l~A~~~i~~Ge~I~~e~plv~~p~~~~~~~~C~~C~~~~~~~~~~~~~C~~C  119 (541)
                      ..+|..++....  .+. +...+..||+++|+++|+.|++|+.|.|++.+|...    .|..|+...      ...|.+|
T Consensus         2 ~~~~~~~~~~~~--~~~~~~~~~~~Gr~~~a~~~i~~g~~i~~e~p~~~~p~~~----~~~~c~~~~------~~~C~~~   69 (482)
T KOG2084|consen    2 TKDLKSDPRNGL--NVEEVANSPELGRGLVATQAIEAGEVILEEEPLVVGPASK----SCSRCLGCS------CDHCRRC   69 (482)
T ss_pred             cchhccCccccC--CcccccCccccCcceeeecccCCCceEEecCcceeeeccc----CCccccccc------hhhhhcC
Confidence            456666444332  222 223358899999999999999999999999999983    344444321      3467777


Q ss_pred             Ccc-ccChhhhccccCCCCHhhhhhhhhcchhhhccCccchhcHHHHHHHHHhcC---ChhhH--HHHHHhhhhhccCCC
Q psy6242         120 FWP-ACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRR---SPKKY--QELKDMEAHMSKRGP  193 (541)
Q Consensus       120 ~~~-yCS~~C~~~~~~~~H~~EC~~l~~~~~~~~~~~~~~~~~~l~lR~l~~~~~---~~~~~--~~v~~L~sh~~~~~~  193 (541)
                      ..+ +|+. |.+..++.-+..+|.. ........    ........-++......   .++.+  ..+..+....+.. +
T Consensus        70 ~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  142 (482)
T KOG2084|consen   70 LEAIECNK-CQQRGWALCGKFACSA-DLAKLECE----PLKLVGAPEECLALSSLHEESREAIVLLSLLEECSLSAEK-P  142 (482)
T ss_pred             CccHhhhh-hhccCccccchhhcch-hhcccccc----chhhccchHHHHHhhcCCccccchHHHHHHHHHhhhhccc-c
Confidence            766 7764 4443556666666655 22211100    00000111111111111   11111  1111111111111 1


Q ss_pred             CchhHHHHHHHHHHHHHHHhhhCCCCCCCcCCHHHHHHHHhhhhcccccc-----C----CceeEEecccccccCCCCCC
Q psy6242         194 GTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDI-----G----RYTQGLYSVICLMEHNCLPN  264 (541)
Q Consensus       194 ~~~~~~~~~~i~~~L~~~~~~~l~~~~l~~~~~~~i~~i~~~l~~Naf~i-----~----~~g~glYp~~Sl~NHSC~PN  264 (541)
                      ....+....  -.......  ...  .........+..+...+..|++.+     .    ..+.|+||..+++||||.||
T Consensus       143 ~~~~~~~~~--~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~hsC~pn  216 (482)
T KOG2084|consen  143 RLRLDLSYL--EHGATEDD--QSH--LLLVLAADCISKLFPSLLCNSITNASSLRVPEPLFLGRGLFPGSSLFNHSCFPN  216 (482)
T ss_pred             cHhHHHhhH--HHHhhHHh--hcc--ccchhHHHHHHHHHHHHHHhhhhhhhhhhccccccceeeecccchhcccCCCCC
Confidence            100000000  00000000  000  000012223333344444444444     2    48999999999999999999


Q ss_pred             ceeeeeCCeEEEE-e----cC-CeeeeeccCCCCChHHHHHHHhcCCCeEEeccCCCCCCccccccccccccccCCCCCc
Q psy6242         265 AKHSNMMQSKLFV-F----RD-THISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGD  338 (541)
Q Consensus       265 ~~~~f~~~~~i~v-r----~G-eEItisY~d~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~e~~~~l~~~~C~~~~~~~C~  338 (541)
                      +...|++...+.+ .    ++ +||+++|++.++++..||.+|+..|+|.|.|+||.|+++.++++++++|...   +|.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~~~~~~~~~~~c~~~---~~~  293 (482)
T KOG2084|consen  217 ISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPTELGTFLSSLRCENC---TCG  293 (482)
T ss_pred             eEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCCccccchhhhhhcCC---CCC
Confidence            9999988643322 2    44 4999999999999999999999999999999999999999999999999884   366


Q ss_pred             eeeecCCCCCCCCCcccCcCcCccCHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhcccCCCChhHHHHHHHHHH
Q psy6242         339 CWILPVNPLDNDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQ  418 (541)
Q Consensus       339 g~~lp~~~~~~~~~w~C~~C~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~le~~l~~~~~~Lhp~h~~~~~~~~~L~~  418 (541)
                      +.+.+..+..+...|.|..|........+....+....++..   ........+.+..+...+++++|+........+..
T Consensus       294 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~  370 (482)
T KOG2084|consen  294 GLLGTSFLDKEDLQWPCTECALVRLKAYVVESREELQNELLD---AFSDLLIEELLLLRQESLELPNDFEVLLLKLHLLF  370 (482)
T ss_pred             CccCCCcccccCCCccccccccchhHHHHHHHHHHHHhhccc---cCChhhhHHHHHHHHHhhhCcchHHHHHHHHHHHH
Confidence            655555443356799999999998888787776666544111   12344556677778889999999999999999999


Q ss_pred             HHhcCCCCccccCCHHHHHhhcce-----------eeccccccCcccccccccc
Q psy6242         419 LYGTQPGYAYTQLSSSLLERKISY-----------VMSPNLKATDEPICLGCHK  461 (541)
Q Consensus       419 ly~~~~~~~~~~~~~~~l~rk~~~-----------~~~Pg~~~~~~~~c~ec~~  461 (541)
                      +++...+..+...+...+.++..+           .+.||.....+...++...
T Consensus       371 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (482)
T KOG2084|consen  371 ILGSLLGAFLSCSPNAELERLLNLFECRELLKALRDVKPGEEPLIAYLDYELGK  424 (482)
T ss_pred             HHHHHHhhhhccchhhHHHHHHHhhhhhHHHHHHHhhcchhhhhhHHHHHHHHH
Confidence            999876654566666666666655           7888877666666655544

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>KOG1710|consensus Back     alignment and domain information
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2589|consensus Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>KOG2061|consensus Back     alignment and domain information
>COG2940 Proteins containing SET domain [General function prediction only] Back     alignment and domain information
>KOG4442|consensus Back     alignment and domain information
>KOG1080|consensus Back     alignment and domain information
>KOG3612|consensus Back     alignment and domain information
>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51 Back     alignment and domain information
>KOG1710|consensus Back     alignment and domain information
>KOG1337|consensus Back     alignment and domain information
>KOG1141|consensus Back     alignment and domain information
>KOG1082|consensus Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>KOG2857|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query541
3qww_A433 SET and MYND domain-containing protein 2; methyltr 2e-36
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 9e-36
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 3e-33
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 2e-13
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 4e-13
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 4e-13
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 7e-13
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 7e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 Back     alignment and structure
 Score =  140 bits (352), Expect = 2e-36
 Identities = 53/373 (14%), Positives = 115/373 (30%), Gaps = 35/373 (9%)

Query: 55  PYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNA 114
             E   S   GR L+A    H GD +           +      C  C            
Sbjct: 8   GLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLS---- 63

Query: 115 RCPRCFWPACSARCSGLSDAHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRS 174
           +C RC             D   H  EC+ + +  E        +  A +  +  I   R+
Sbjct: 64  KCGRCKQAFYCDVECQKEDWPLHKLECSSMVVLGENWNPSETVRLTARILAKQKIHPERT 123

Query: 175 PK-KYQELKDMEAHMSKRGPGTEVYEEIDSIVKYLRSNFLEKLPGDVLDDTSAKCLHWIC 233
           P  K   +++ E+H+ K     E  + I S +  L   + + L                C
Sbjct: 124 PSEKLLAVREFESHLDKLDN--EKKDLIQSDIAALHQFYSKYLEFPDHSSLVVLFAQVNC 181

Query: 234 GVIEVNGVDIGRYTQGLYSVICLMEHNCLPNAKHS-NMMQSKLFVFRD----THISTMYT 288
               +   ++      ++  + LM H+C PN   +     +++   ++      + T Y 
Sbjct: 182 NGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYI 241

Query: 289 NALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLD 348
           + L+ T+ R + L  + +F C C  C+   +        K  +  + +    ++      
Sbjct: 242 DLLYPTEDRNDRLRDSYFFTCECRECTTKDKDKAKVEVRKLSSPPQAEAIRDMV---RYA 298

Query: 349 NDSDWTCGSCSARLNARDVHLVTSQLGEQVDKLVQENPNVKSLEEMLTKLEAMFHPHHYH 408
            +            +  ++                    ++  E    K+ ++F   + +
Sbjct: 299 RNVIEEFRRAKHYKSPSEL--------------------LEICELSQEKMSSVFEDSNVY 338

Query: 409 CYAVKHSLIQLYG 421
              + +  + +  
Sbjct: 339 MLHMMYQAMGVCL 351
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60 Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60 Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query541
3qww_A433 SET and MYND domain-containing protein 2; methyltr 100.0
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 100.0
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 100.0
3rq4_A247 Histone-lysine N-methyltransferase SUV420H2; suppr 99.25
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 99.04
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 99.03
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 98.93
3s8p_A273 Histone-lysine N-methyltransferase SUV420H1; SET d 98.93
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 98.91
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 98.9
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 98.72
2w5y_A192 Histone-lysine N-methyltransferase HRX; transcript 98.47
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 98.34
3smt_A497 Histone-lysine N-methyltransferase SETD3; histone 98.17
3ope_A222 Probable histone-lysine N-methyltransferase ASH1L; 98.11
3f9x_A166 Histone-lysine N-methyltransferase SETD8; methyltr 98.09
3ooi_A232 Histone-lysine N-methyltransferase, H3 lysine-36 l 98.04
3qxy_A449 N-lysine methyltransferase SETD6; epigenetics, pro 98.04
3h6l_A278 Histone-lysine N-methyltransferase SETD2; SET doma 97.85
1ml9_A302 Histone H3 methyltransferase DIM-5; adoMet-depende 97.81
3qww_A433 SET and MYND domain-containing protein 2; methyltr 97.8
3hna_A287 Histone-lysine N-methyltransferase, H3 lysine-9 sp 97.77
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 97.66
2h21_A440 Ribulose-1,5 bisphosphate carboxylase/oxygenase; S 97.62
2f69_A261 Histone-lysine N-methyltransferase, H3 lysine-4 sp 97.58
2r3a_A300 Histone-lysine N-methyltransferase SUV39H2; histon 97.53
1mvh_A299 Cryptic LOCI regulator 4; lysine methyltransferase 97.49
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 97.46
3bo5_A290 Histone-lysine N-methyltransferase setmar; SET dom 97.45
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 97.4
1h3i_A293 Histone H3 lysine 4 specific methyltransferase; 2. 97.25
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 97.24
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 97.17
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 97.09
2qpw_A149 PR domain zinc finger protein 2; methyltransferase 96.86
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 92.51
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 92.49
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 92.08
3db5_A151 PR domain zinc finger protein 4; methyltransferase 88.93
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 88.85
1n3j_A119 A612L, histone H3 lysine methyltransferase; beta b 85.54
3ep0_A170 PR domain zinc finger protein 12; PR domain-contai 85.25
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
Probab=100.00  E-value=6.4e-48  Score=410.28  Aligned_cols=344  Identities=18%  Similarity=0.232  Sum_probs=260.3

Q ss_pred             CccccCCcccchhhccccCCCCCccccccCCeeeccccCCCCcccccccCCCCCCCCCCcCCCCCCcc-ccChhhhcccc
Q psy6242          55 PYEIKSSPLLGRYLQATLDLHPGDRIARESPLIVGPKLALAEPICLGCHKPLNPNLADNARCPRCFWP-ACSARCSGLSD  133 (541)
Q Consensus        55 ~~~i~~s~~~GR~l~A~~~i~~Ge~I~~e~plv~~p~~~~~~~~C~~C~~~~~~~~~~~~~C~~C~~~-yCS~~C~~~~~  133 (541)
                      .+++..+|.+||+++|+++|++|++|+.|.|++.++.......+|.+|++...    .+.+|++|+++ |||++|+..+|
T Consensus         8 ~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~----~~~~C~~C~~~~yCs~~Cq~~~w   83 (433)
T 3qww_A            8 GLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKE----GLSKCGRCKQAFYCDVECQKEDW   83 (433)
T ss_dssp             TEEEEECTTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCS----SCEECTTTSCCEESSHHHHHHHH
T ss_pred             cEEEeecCCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCC----CCCCCCCCcceeecChhhhhhhh
Confidence            67788999999999999999999999999999988876666699999999754    37899999997 99999999654


Q ss_pred             CCCCHhhhhhhhhcchhhhccCccchhcHHHHHHHHHhcCCh-----hhHHHHHHhhhhhccCCCCchhHHHHHHHHHHH
Q psy6242         134 AHTHAPECAILKLGCETLLAYNDYKYEAILPLRCLILQRRSP-----KKYQELKDMEAHMSKRGPGTEVYEEIDSIVKYL  208 (541)
Q Consensus       134 ~~~H~~EC~~l~~~~~~~~~~~~~~~~~~l~lR~l~~~~~~~-----~~~~~v~~L~sh~~~~~~~~~~~~~~~~i~~~L  208 (541)
                       .+|+.||..++.++...    .+...+++++|+++....++     +.+..|..|++|.+++ .+ +....+...+..|
T Consensus        84 -~~Hk~eC~~l~~~~~~~----~p~~~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~-~~-~~~~~~~~~~~~l  156 (433)
T 3qww_A           84 -PLHKLECSSMVVLGENW----NPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKL-DN-EKKDLIQSDIAAL  156 (433)
T ss_dssp             -HHHTTTHHHHHHSSTTC----CCCHHHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGC-CH-HHHHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHhCccC----CCcHHHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhcc-Ch-HHHHHHHHHHHHH
Confidence             79999999999875421    13456899999988753332     2345678999999987 43 2222222223344


Q ss_pred             HHHHhhhCCCCCCCcCCHHHHHHHHhhhhcccccc-C----CceeEEecccccccCCCCCCceeeeeCCeEEEEe-----
Q psy6242         209 RSNFLEKLPGDVLDDTSAKCLHWICGVIEVNGVDI-G----RYTQGLYSVICLMEHNCLPNAKHSNMMQSKLFVF-----  278 (541)
Q Consensus       209 ~~~~~~~l~~~~l~~~~~~~i~~i~~~l~~Naf~i-~----~~g~glYp~~Sl~NHSC~PN~~~~f~~~~~i~vr-----  278 (541)
                      ..+|    +. .+..++.++|..+++++++|+|+| +    ..|+||||.+|+|||||.||+.+.|++. .++||     
T Consensus       157 ~~~~----~~-~~~~~~~~~i~~~~~~~~~N~f~i~~~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~-~~~~~a~r~I  230 (433)
T 3qww_A          157 HQFY----SK-YLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVTYKGT-LAEVRAVQEI  230 (433)
T ss_dssp             HHHH----TT-TCCCCCHHHHHHHHHHHHHHCEEEECTTCCEEEEEECTTGGGSEECSSCSEEEEEETT-EEEEEESSCB
T ss_pred             HHHH----hc-ccCCCCHHHHHHHHHHHcCCceecccCCccceeEEecccccccCCCCCCCceEEEcCC-EEEEEeccCc
Confidence            4544    11 122358899999999999999999 2    4589999999999999999999999986 67776     


Q ss_pred             -cCCeeeeeccCCCCChHHHHHHHhcCCCeEEeccCCCCCCccccccccccccccCCCCCceeeecCCCCCCCCCcccCc
Q psy6242         279 -RDTHISTMYTNALWGTQPRREHLAITKYFNCSCERCSDPTELGTYFSAMKCLNEHKDQGDCWILPVNPLDNDSDWTCGS  357 (541)
Q Consensus       279 -~GeEItisY~d~~~~~~~Rr~~L~~~y~F~C~C~rC~~~~e~~~~l~~~~C~~~~~~~C~g~~lp~~~~~~~~~w~C~~  357 (541)
                       +||||||||++..+|+.+||+.|+++|+|+|.|+||.++++.+..     +..     |.   .+              
T Consensus       231 ~~Geel~i~Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~~d~~~-----~~~-----~~---~~--------------  283 (433)
T 3qww_A          231 HPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKDKDKAK-----VEV-----RK---LS--------------  283 (433)
T ss_dssp             CTTCEEEECCSCTTSCHHHHHHHHHHHHSCCCCSHHHHHCTTHHHH-----TCB-----CC---CS--------------
T ss_pred             CCCCEEEEeecCCcCCHHHHHHHHhCcCCEEeECCCCCCCCcchhh-----hhh-----hh---cC--------------
Confidence             999999999999999999999999999999999999999874322     222     11   01              


Q ss_pred             CcCccCHHHHHHHHHHHHHHHHHHHhc--CCC----HHHHHHHHHHhhcccCCCChhHHHHHHHHHHHHhcCCCCccccC
Q psy6242         358 CSARLNARDVHLVTSQLGEQVDKLVQE--NPN----VKSLEEMLTKLEAMFHPHHYHCYAVKHSLIQLYGTQPGYAYTQL  431 (541)
Q Consensus       358 C~~~~~~~~v~~~l~~~~~~~~~~~~~--~~~----~~~le~~l~~~~~~Lhp~h~~~~~~~~~L~~ly~~~~~~~~~~~  431 (541)
                        .....+.+..++..+.+.++.+-..  .++    ...+++.|+..+++|+|+|+.++.+...|+.+|...+.|.-.  
T Consensus       284 --~~~~~e~v~~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA--  359 (433)
T 3qww_A          284 --SPPQAEAIRDMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGA--  359 (433)
T ss_dssp             --SCCCHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHH--
T ss_pred             --CCccHHHHHHHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHH--
Confidence              1112355666665555555554111  122    334667788889999999999999999999999998887522  


Q ss_pred             CHHHHHhhcce---eeccc
Q psy6242         432 SSSLLERKISY---VMSPN  447 (541)
Q Consensus       432 ~~~~l~rk~~~---~~~Pg  447 (541)
                       ....++-+.+   ++||.
T Consensus       360 -~~~~~~aL~i~~~~lG~~  377 (433)
T 3qww_A          360 -LKYGQKIIKPYSKHYPVY  377 (433)
T ss_dssp             -HHHHHHHHHHHHHHSCSS
T ss_pred             -HHHHHHHHHHHHHHcCCC
Confidence             3455555555   66654
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens} Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Back     alignment and structure
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens} Back     alignment and structure
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A* Back     alignment and structure
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens} Back     alignment and structure
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Back     alignment and structure
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A* Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Back     alignment and structure
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A* Back     alignment and structure
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Back     alignment and structure
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens} Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A* Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A* Back     alignment and structure
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 541
d2dana147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 8e-11
d2dj8a147 g.85.1.1 (A:8-54) Zinc finger MYND domain-containi 4e-10
d2jw6a138 g.85.1.1 (A:503-540) Zinc finger MYND domain-conta 5e-10
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (132), Expect = 8e-11
 Identities = 17/47 (36%), Positives = 24/47 (51%)

Query: 5  IEIEDEELMRCAVCRETALHKCSACKEVAYCGKQHQKEHWKLHKPKC 51
          +E    E  RCA C   A  +CS C+   YC ++ Q +HW+ H   C
Sbjct: 1  LEAVAPERPRCAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 47
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47 Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query541
d2h2ja2261 RuBisCo LSMT catalytic domain {Garden pea (Pisum s 99.46
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 99.32
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 99.28
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 99.24
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 98.2
d1ml9a_284 Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} 97.8
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 97.73
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 97.43
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 97.4
d2f69a2171 Histone H3 K4-specific methyltransferase SET7/9 ca 97.29
d1mvha_269 SET domain of Clr4 {Fission yeast (Schizosaccharom 96.8
d2g46a1119 Viral histone H3 Lysine 27 Methyltransferase {Para 84.66
d1x4sa146 Zinc finger HIT domain containing protein 2, ZNHIT 82.65
>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.46  E-value=6.9e-14  Score=135.58  Aligned_cols=82  Identities=10%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             cCCHHHHHHHHhhhhcccccc-CCceeEEecccccccCCCCCCceeeeeC----------CeEEEEe------cCCeeee
Q psy6242         223 DTSAKCLHWICGVIEVNGVDI-GRYTQGLYSVICLMEHNCLPNAKHSNMM----------QSKLFVF------RDTHIST  285 (541)
Q Consensus       223 ~~~~~~i~~i~~~l~~Naf~i-~~~g~glYp~~Sl~NHSC~PN~~~~f~~----------~~~i~vr------~GeEIti  285 (541)
                      .++.+.+..++..+..++|.+ +..|.+|||.++|+||||.||+..++++          +..++||      +||||||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~~~~~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~i  236 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYI  236 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC---CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCEE
T ss_pred             ccCHHHHHHHHHHhhcccccccccccccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEEE
Confidence            468889999999999999998 6778999999999999999999998853          1356666      9999999


Q ss_pred             eccCCCCChHHHHHHHhcCCCeEE
Q psy6242         286 MYTNALWGTQPRREHLAITKYFNC  309 (541)
Q Consensus       286 sY~d~~~~~~~Rr~~L~~~y~F~C  309 (541)
                      ||+... +.    ..|...|||..
T Consensus       237 sYG~~~-~n----~~ll~~yGFv~  255 (261)
T d2h2ja2         237 QYDLNK-SN----AELALDYGFIE  255 (261)
T ss_dssp             CSCSSC-CH----HHHHHHSSCCC
T ss_pred             ecCCCC-CH----HHHHHhCCCCC
Confidence            998543 32    23666799974
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Back     information, alignment and structure
>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure