Psyllid ID: psy6266
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | 2.2.26 [Sep-21-2011] | |||||||
| Q5R691 | 413 | Aspartate aminotransferas | yes | N/A | 0.871 | 0.460 | 0.5 | 5e-51 | |
| Q4R5L1 | 413 | Aspartate aminotransferas | N/A | N/A | 0.871 | 0.460 | 0.504 | 6e-51 | |
| P00503 | 413 | Aspartate aminotransferas | yes | N/A | 0.871 | 0.460 | 0.495 | 7e-51 | |
| A5A6K8 | 413 | Aspartate aminotransferas | yes | N/A | 0.871 | 0.460 | 0.5 | 8e-51 | |
| P17174 | 413 | Aspartate aminotransferas | yes | N/A | 0.871 | 0.460 | 0.5 | 8e-51 | |
| P08906 | 413 | Aspartate aminotransferas | yes | N/A | 0.889 | 0.469 | 0.480 | 1e-49 | |
| P13221 | 413 | Aspartate aminotransferas | yes | N/A | 0.871 | 0.460 | 0.485 | 4e-49 | |
| P05201 | 413 | Aspartate aminotransferas | yes | N/A | 0.871 | 0.460 | 0.480 | 5e-48 | |
| Q22067 | 408 | Probable aspartate aminot | yes | N/A | 0.706 | 0.377 | 0.587 | 7e-48 | |
| P00504 | 412 | Aspartate aminotransferas | yes | N/A | 0.871 | 0.461 | 0.466 | 4e-47 |
| >sp|Q5R691|AATC_PONAB Aspartate aminotransferase, cytoplasmic OS=Pongo abelii GN=GOT1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 200 bits (509), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 133/206 (64%), Gaps = 16/206 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ EKR +D G+ DL NAP+ S+++LHACAHNPT +Q+A ++ H
Sbjct: 159 YRYWDAEKRGLDLQGLLNDLENAPEFSIVVLHACAHNPTGTDPTPEQWKQIASVM--KHR 216
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIH 208
+L G + NL+ A AI
Sbjct: 217 FLFPFFDSAYQGFASGNLERDAWAIR 242
|
Plays a key role in amino acid metabolism. Pongo abelii (taxid: 9601) EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1 |
| >sp|Q4R5L1|AATC_MACFA Aspartate aminotransferase, cytoplasmic OS=Macaca fascicularis GN=GOT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 200 bits (509), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/206 (50%), Positives = 132/206 (64%), Gaps = 16/206 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ EKR +D G DL NAP+ S+I+LHACAHNPT +Q+A ++ H
Sbjct: 159 YRYWDAEKRGLDLQGFLNDLENAPEFSIIVLHACAHNPTGTDPTPEQWKQIASVM--KHR 216
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIH 208
+L G + NL+ A AI
Sbjct: 217 FLFPFFDSAYQGFASGNLERDAWAIR 242
|
Plays a key role in amino acid metabolism. Macaca fascicularis (taxid: 9541) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00503|AATC_PIG Aspartate aminotransferase, cytoplasmic OS=Sus scrofa GN=GOT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 200 bits (508), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 102/206 (49%), Positives = 130/206 (63%), Gaps = 16/206 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C+PWVLPVVR+ E+ +A D SLNHEYLP+LGL F + A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCQPWVLPVVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDD-SPALQE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GAEFL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ EKR +D G DL NAP+ S+ +LHACAHNPT +Q+A ++ + +
Sbjct: 159 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL 218
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIH 208
+ G + NL+ A AI
Sbjct: 219 FPFFDSAYQ--GFASGNLEKDAWAIR 242
|
Plays a key role in amino acid metabolism. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|A5A6K8|AATC_PANTR Aspartate aminotransferase, cytoplasmic OS=Pan troglodytes GN=GOT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 132/206 (64%), Gaps = 16/206 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ EKR +D G DL NAP+ S+++LHACAHNPT +Q+A ++ H
Sbjct: 159 YRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVM--KHR 216
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIH 208
+L G + NL+ A AI
Sbjct: 217 FLFPFFDSAYQGFASGNLERDAWAIR 242
|
Plays a key role in amino acid metabolism. Pan troglodytes (taxid: 9598) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P17174|AATC_HUMAN Aspartate aminotransferase, cytoplasmic OS=Homo sapiens GN=GOT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 199 bits (507), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 132/206 (64%), Gaps = 16/206 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ EKR +D G DL NAP+ S+++LHACAHNPT +Q+A ++ H
Sbjct: 159 YRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPTGIDPTPEQWKQIASVM--KHR 216
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIH 208
+L G + NL+ A AI
Sbjct: 217 FLFPFFDSAYQGFASGNLERDAWAIR 242
|
Plays a key role in amino acid metabolism. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P08906|AATC_HORSE Aspartate aminotransferase, cytoplasmic OS=Equus caballus GN=GOT1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 196 bits (498), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 101/210 (48%), Positives = 131/210 (62%), Gaps = 16/210 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C+PWVLPVVR+ E+++A + SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCQPWVLPVVRKVEQKIANNSSLNHEYLPILGLAEFRSCASRLALGDD-SPALQE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GAEFL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGAEFLSRWYNGTNNKNTPVYVSSPTWENHNGVFSGAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
Y YW+ KR +D G DL NAP+ S+ +LHACAHNPT +Q+A ++ + +
Sbjct: 159 YHYWDATKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL 218
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIHDAVT 212
+ G + NLD A A+ V+
Sbjct: 219 FPFFDSAYQ--GFASGNLDRDAWAVRYFVS 246
|
Equus caballus (taxid: 9796) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P13221|AATC_RAT Aspartate aminotransferase, cytoplasmic OS=Rattus norvegicus GN=Got1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 194 bits (492), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 100/206 (48%), Positives = 131/206 (63%), Gaps = 16/206 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++ +PWVLPVVR+ E+++A D SLNHEYLP+LGL F S A++++LG D SP LRE
Sbjct: 40 AYRTDDSQPWVLPVVRKVEQKIANDHSLNHEYLPILGLAEFRSCASQLVLG-DNSPALRE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILN-----YTTFYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 NRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPVYVSSPTWENHNGVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ EKR +D G DL NAP+ S+ +LHACAHNPT +Q+A ++ + +
Sbjct: 159 YRYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTEEEWKQIAAVMKRRFL 218
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIH 208
+ G + +L+ A AI
Sbjct: 219 FPFFDSAYQ--GFASGDLEKDAWAIR 242
|
Plays a key role in amino acid metabolism. Rattus norvegicus (taxid: 10116) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P05201|AATC_MOUSE Aspartate aminotransferase, cytoplasmic OS=Mus musculus GN=Got1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 190 bits (483), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 99/206 (48%), Positives = 130/206 (63%), Gaps = 16/206 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E +PWVLPVVR+ E+++A D+SLNHEYLP+LGL F S A+R++LG D S +RE
Sbjct: 40 AYRTDESQPWVLPVVRKVEQKIANDNSLNHEYLPILGLAEFRSCASRLVLG-DNSLAIRE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILN-----YTTFYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 NRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPIYVSSPTWENHNAVFSAAGFKDIRP 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
Y YW+ EKR +D G DL NAP+ S+ +LHACAHNPT +Q+A ++ + +
Sbjct: 159 YCYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIAAVMQRRFL 218
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIH 208
+ G + +L+ A AI
Sbjct: 219 FPFFDSAYQ--GFASGDLEKDAWAIR 242
|
Plays a key role in amino acid metabolism. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q22067|AATC_CAEEL Probable aspartate aminotransferase, cytoplasmic OS=Caenorhabditis elegans GN=T01C8.5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 190 bits (482), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 91/155 (58%), Positives = 109/155 (70%), Gaps = 1/155 (0%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRTEE +PWVLPVV + E E+A D SLNHEYLPVLG E F AAT ++LG + SP ++E
Sbjct: 37 AYRTEEGQPWVLPVVHETEVEIANDTSLNHEYLPVLGHEGFRKAATELVLGAE-SPAIKE 95
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R+FGVQ LSGTGALR GAEFL + N T Y S PTW NH+LVF AGFT +Y +W+
Sbjct: 96 ERSFGVQCLSGTGALRAGAEFLASVCNMKTVYVSNPTWGNHKLVFKKAGFTTVADYTFWD 155
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170
+ + V DL +AP+ SVIILH CAHNPT
Sbjct: 156 YDNKRVHIEKFLSDLESAPEKSVIILHGCAHNPTG 190
|
Plays a key role in amino acid metabolism. Caenorhabditis elegans (taxid: 6239) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
| >sp|P00504|AATC_CHICK Aspartate aminotransferase, cytoplasmic OS=Gallus gallus GN=GOT1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 187 bits (475), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/206 (46%), Positives = 128/206 (62%), Gaps = 16/206 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E +PWVLPVVR+ E+ +A D SLNHEYLP+LGL F + A+R+ LG D SP + +
Sbjct: 39 AYRTDEGQPWVLPVVRKVEQLIAGDGSLNHEYLPILGLPEFRANASRIALGDD-SPAIAQ 97
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILN-----YTTFYYSKPTWENHRLVFLNAGFTEARE 130
R VQ L GTGALR+GAEFL R N T Y S PTWENH VF++AGF + R
Sbjct: 98 KRVGSVQGLGGTGALRIGAEFLRRWYNGNNNTATPVYVSSPTWENHNSVFMDAGFKDIRT 157
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ KR +D G+ +D+ AP+ S+ ILHACAHNPT +Q+A ++ + +
Sbjct: 158 YRYWDAAKRGLDLQGLLDDMEKAPEFSIFILHACAHNPTGTDPTPDEWKQIAAVMKRRCL 217
Query: 183 YLLRSGRINMCGLTTQNLDHVAQAIH 208
+ G + +LD A A+
Sbjct: 218 FPFFDSAYQ--GFASGSLDKDAWAVR 241
|
Plays a key role in amino acid metabolism. Gallus gallus (taxid: 9031) EC: 2 EC: . EC: 6 EC: . EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | ||||||
| 332376935 | 408 | unknown [Dendroctonus ponderosae] | 0.866 | 0.463 | 0.62 | 4e-63 | |
| 372477536 | 374 | aspartate aminotransferase, partial [All | 0.766 | 0.446 | 0.659 | 7e-63 | |
| 372477544 | 374 | aspartate aminotransferase, partial [All | 0.706 | 0.411 | 0.735 | 9e-63 | |
| 372477540 | 374 | aspartate aminotransferase, partial [All | 0.706 | 0.411 | 0.735 | 9e-63 | |
| 372477546 | 374 | aspartate aminotransferase, partial [All | 0.706 | 0.411 | 0.729 | 2e-62 | |
| 156554459 | 406 | PREDICTED: aspartate aminotransferase, c | 0.866 | 0.465 | 0.6 | 3e-62 | |
| 372477542 | 374 | aspartate aminotransferase, partial [All | 0.706 | 0.411 | 0.722 | 3e-61 | |
| 340726366 | 415 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.706 | 0.371 | 0.716 | 7e-61 | |
| 350424062 | 415 | PREDICTED: probable aspartate aminotrans | 0.706 | 0.371 | 0.709 | 2e-60 | |
| 307180800 | 1089 | Aspartate aminotransferase, cytoplasmic | 0.720 | 0.144 | 0.677 | 4e-60 |
| >gi|332376935|gb|AEE63607.1| unknown [Dendroctonus ponderosae] | Back alignment and taxonomy information |
|---|
Score = 246 bits (628), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 124/200 (62%), Positives = 148/200 (74%), Gaps = 11/200 (5%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E KPWVLPVVR AEK LA D++LN EYLPVLGLE+FS+A++RMLLG D S + E
Sbjct: 37 AYRTDEGKPWVLPVVRTAEKALANDETLNKEYLPVLGLETFSAASSRMLLGAD-SAAIAE 95
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
RAFGVQTLSGTGALRVGAEFL R L+ T FY+SKPTWENHRLVFLNAGF EAREYRYW+
Sbjct: 96 NRAFGVQTLSGTGALRVGAEFLARHLDKTVFYFSKPTWENHRLVFLNAGFKEAREYRYWH 155
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHVYLLRS 187
PE RA+D G+ EDL NAP+ +V+ILHACAHNPT Q+A +V + ++
Sbjct: 156 PESRALDIEGLLEDLRNAPEGAVVILHACAHNPTGCDPSHEQWAQIADVVKQKRLFPFFD 215
Query: 188 GRINMCGLTTQNLDHVAQAI 207
G + +LD A A+
Sbjct: 216 SAYQ--GFASGDLDKDAWAV 233
|
Source: Dendroctonus ponderosae Species: Dendroctonus ponderosae Genus: Dendroctonus Family: Curculionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|372477536|gb|AEX97003.1| aspartate aminotransferase, partial [Allonemobius fasciatus] gi|372477538|gb|AEX97004.1| aspartate aminotransferase, partial [Allonemobius fasciatus] | Back alignment and taxonomy information |
|---|
Score = 245 bits (626), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 116/176 (65%), Positives = 141/176 (80%), Gaps = 9/176 (5%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E KPW+LPVV + EKE+AA+++LNHEYLPVLGLE+ SSAAT MLLG + S + E
Sbjct: 18 AYRTDEGKPWILPVVGKTEKEMAANETLNHEYLPVLGLETLSSAATTMLLGSNCSA-IVE 76
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GRAFGVQTLSGTGALR+GAEFL R L Y TFY+S+PTWENHRLVFLNAGFT+AREYRYW+
Sbjct: 77 GRAFGVQTLSGTGALRLGAEFLARHLGYKTFYFSQPTWENHRLVFLNAGFTDAREYRYWD 136
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVY 183
+ R +DF G+ EDL AP+NSVIILHACAHNPT ++A ++ K ++
Sbjct: 137 SKNRGIDFNGLIEDLNTAPENSVIILHACAHNPTGSDPTREQWAEIAEVMKKKKLF 192
|
Source: Allonemobius fasciatus Species: Allonemobius fasciatus Genus: Allonemobius Family: Gryllidae Order: Orthoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|372477544|gb|AEX97007.1| aspartate aminotransferase, partial [Allonemobius sp. Tex] gi|372477548|gb|AEX97009.1| aspartate aminotransferase, partial [Allonemobius sp. Tex] gi|372477550|gb|AEX97010.1| aspartate aminotransferase, partial [Allonemobius sp. Tex] gi|372477552|gb|AEX97011.1| aspartate aminotransferase, partial [Allonemobius sp. Tex] gi|372477554|gb|AEX97012.1| aspartate aminotransferase, partial [Allonemobius sp. Tex] | Back alignment and taxonomy information |
|---|
Score = 245 bits (625), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 114/155 (73%), Positives = 133/155 (85%), Gaps = 1/155 (0%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E KPW+LPVV + EKE+AA+++LNHEYLPVLGLE+ SSAAT MLLG + S + E
Sbjct: 18 AYRTDEGKPWILPVVGKTEKEMAANETLNHEYLPVLGLETLSSAATTMLLGSNCSA-IVE 76
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GRAFGVQTLSGTGALR+GAEFL R L Y TFY+S+PTWENHRLVFLNAGFT+AREYRYW+
Sbjct: 77 GRAFGVQTLSGTGALRLGAEFLARHLGYKTFYFSQPTWENHRLVFLNAGFTDAREYRYWD 136
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170
+ R +DF G+ EDL AP+NSVIILHACAHNPT
Sbjct: 137 SKNRGIDFNGLIEDLNTAPENSVIILHACAHNPTG 171
|
Source: Allonemobius sp. Tex Species: Allonemobius sp. Tex Genus: Allonemobius Family: Gryllidae Order: Orthoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|372477540|gb|AEX97005.1| aspartate aminotransferase, partial [Allonemobius socius] | Back alignment and taxonomy information |
|---|
Score = 245 bits (625), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 114/155 (73%), Positives = 133/155 (85%), Gaps = 1/155 (0%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E KPW+LPVV + EKE+AA+++LNHEYLPVLGLE+ SSAAT MLLG + S + E
Sbjct: 18 AYRTDEGKPWILPVVGKTEKEMAANETLNHEYLPVLGLETLSSAATTMLLGSNCSA-IVE 76
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GRAFGVQTLSGTGALR+GAEFL R L Y TFY+S+PTWENHRLVFLNAGFT+AREYRYW+
Sbjct: 77 GRAFGVQTLSGTGALRLGAEFLARHLGYKTFYFSQPTWENHRLVFLNAGFTDAREYRYWD 136
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170
+ R +DF G+ EDL AP+NSVIILHACAHNPT
Sbjct: 137 SKNRGIDFNGLIEDLNTAPENSVIILHACAHNPTG 171
|
Source: Allonemobius socius Species: Allonemobius socius Genus: Allonemobius Family: Gryllidae Order: Orthoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|372477546|gb|AEX97008.1| aspartate aminotransferase, partial [Allonemobius sp. Tex] | Back alignment and taxonomy information |
|---|
Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 113/155 (72%), Positives = 133/155 (85%), Gaps = 1/155 (0%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E KPW+LPVV + EK++AA+++LNHEYLPVLGLE+ SSAAT MLLG + S + E
Sbjct: 18 AYRTDEGKPWILPVVGKTEKDMAANETLNHEYLPVLGLETLSSAATTMLLGSNCSA-IVE 76
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GRAFGVQTLSGTGALR+GAEFL R L Y TFY+S+PTWENHRLVFLNAGFT+AREYRYW+
Sbjct: 77 GRAFGVQTLSGTGALRLGAEFLARHLGYKTFYFSQPTWENHRLVFLNAGFTDAREYRYWD 136
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170
+ R +DF G+ EDL AP+NSVIILHACAHNPT
Sbjct: 137 SKNRGIDFNGLIEDLNTAPENSVIILHACAHNPTG 171
|
Source: Allonemobius sp. Tex Species: Allonemobius sp. Tex Genus: Allonemobius Family: Gryllidae Order: Orthoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156554459|ref|XP_001601449.1| PREDICTED: aspartate aminotransferase, cytoplasmic-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 120/200 (60%), Positives = 147/200 (73%), Gaps = 11/200 (5%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT E KPWVLPVVR+ E LAAD++LNHEYLPVLGL+SFS AAT M+LG D SP + E
Sbjct: 38 AYRTNEGKPWVLPVVRKVESALAADETLNHEYLPVLGLDSFSQAATAMVLGKD-SPAISE 96
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GR GVQTLSGTGALRV AEFL RIL++ TFYYSKPTWENHRLVFLN GF + EYRYW+
Sbjct: 97 GRVIGVQTLSGTGALRVAAEFLARILHFDTFYYSKPTWENHRLVFLNGGFKKNCEYRYWD 156
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHVYLLRS 187
P R ++ GM EDL NAP+NSVIILH+CAHNPT +++A ++++ ++ L
Sbjct: 157 PNTRGINLDGMLEDLKNAPENSVIILHSCAHNPTGCDPTHEQWKKIADVIEEKRLFPLFD 216
Query: 188 GRINMCGLTTQNLDHVAQAI 207
G + +LD+ A A+
Sbjct: 217 SAYQ--GFASGDLDYDAYAV 234
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|372477542|gb|AEX97006.1| aspartate aminotransferase, partial [Allonemobius sp. Tex] | Back alignment and taxonomy information |
|---|
Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/155 (72%), Positives = 132/155 (85%), Gaps = 1/155 (0%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E KPW+LPVV + EK++AA+++LNHEYLPVL LE+ SSAAT MLLG + S + E
Sbjct: 18 AYRTDEGKPWILPVVGKTEKDMAANETLNHEYLPVLVLETLSSAATTMLLGSNCSA-IVE 76
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GRAFGVQTLSGTGALR+GAEFL R L Y TFY+S+PTWENHRLVFLNAGFT+AREYRYW+
Sbjct: 77 GRAFGVQTLSGTGALRLGAEFLARHLGYKTFYFSQPTWENHRLVFLNAGFTDAREYRYWD 136
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170
+ R +DF G+ EDL AP+NSVIILHACAHNPT
Sbjct: 137 SKNRGIDFNGLIEDLNTAPENSVIILHACAHNPTG 171
|
Source: Allonemobius sp. Tex Species: Allonemobius sp. Tex Genus: Allonemobius Family: Gryllidae Order: Orthoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340726366|ref|XP_003401530.1| PREDICTED: LOW QUALITY PROTEIN: probable aspartate aminotransferase, cytoplasmic-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 239 bits (609), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 111/155 (71%), Positives = 128/155 (82%), Gaps = 1/155 (0%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT E KPWVLPVVR+ EK LAAD+ NHEYLPVLGL++FS AATRMLLG D SP + +
Sbjct: 38 AYRTSEGKPWVLPVVRKVEKSLAADELQNHEYLPVLGLDAFSQAATRMLLGAD-SPIIAQ 96
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GRAFG+QTLSGTG LR+ AEFL +L+Y TFYYSKPTWENH+LVF+N GF +A EY YWN
Sbjct: 97 GRAFGIQTLSGTGGLRIIAEFLSHVLHYDTFYYSKPTWENHKLVFVNGGFKKACEYTYWN 156
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170
PE R+VD GM +DL +AP+NSVIILH CAHNPT
Sbjct: 157 PETRSVDIEGMLKDLRDAPENSVIILHTCAHNPTG 191
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350424062|ref|XP_003493676.1| PREDICTED: probable aspartate aminotransferase, cytoplasmic-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 110/155 (70%), Positives = 128/155 (82%), Gaps = 1/155 (0%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT E KPWVLPVVR+ EK LAAD+ NHEYLPVLGL++FS AATRMLLG D SP + +
Sbjct: 38 AYRTSEGKPWVLPVVRKVEKSLAADELQNHEYLPVLGLDAFSQAATRMLLGAD-SPIIAQ 96
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GRAFG+QTLSGTG LR+ AEFL +L+Y TFYYSKPTWENH+LVF+N GF +A EY YWN
Sbjct: 97 GRAFGIQTLSGTGGLRIIAEFLSHVLHYDTFYYSKPTWENHKLVFVNGGFKKACEYTYWN 156
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170
PE R+VD GM +DL +AP+N+VIILH CAHNPT
Sbjct: 157 PETRSVDVEGMLKDLRDAPENAVIILHTCAHNPTG 191
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307180800|gb|EFN68664.1| Aspartate aminotransferase, cytoplasmic [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats.
Identities = 107/158 (67%), Positives = 130/158 (82%), Gaps = 1/158 (0%)
Query: 13 IRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPP 72
I AYRT E KPWVLPVVR+ EK LAAD+ NHEYLPVLGL++FS+AAT MLLG + SP
Sbjct: 35 IIGAYRTSEGKPWVLPVVRKVEKLLAADELQNHEYLPVLGLDAFSAAATSMLLGPN-SPV 93
Query: 73 LREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYR 132
+ +GRAFG+Q+LSGTGALRV AEFL RIL+Y TFYYS P+WENH+LVF+N GF AREYR
Sbjct: 94 IAQGRAFGIQSLSGTGALRVAAEFLSRILHYDTFYYSIPSWENHKLVFINGGFKHAREYR 153
Query: 133 YWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170
YW+ + R V+ GM +DL +AP+N++IILH+CAHNPT
Sbjct: 154 YWDEKTRGVNLEGMLDDLRDAPENAIIILHSCAHNPTG 191
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 218 | ||||||
| UNIPROTKB|P00503 | 413 | GOT1 "Aspartate aminotransfera | 0.701 | 0.370 | 0.591 | 4.8e-62 | |
| ZFIN|ZDB-GENE-040426-2003 | 410 | got1 "glutamic-oxaloacetic tra | 0.701 | 0.373 | 0.578 | 1.6e-61 | |
| UNIPROTKB|Q5R691 | 413 | GOT1 "Aspartate aminotransfera | 0.701 | 0.370 | 0.584 | 6.9e-61 | |
| UNIPROTKB|B7Z7E9 | 392 | GOT1 "Aspartate aminotransfera | 0.701 | 0.390 | 0.584 | 8.8e-61 | |
| UNIPROTKB|P17174 | 413 | GOT1 "Aspartate aminotransfera | 0.701 | 0.370 | 0.584 | 8.8e-61 | |
| UNIPROTKB|A5A6K8 | 413 | GOT1 "Aspartate aminotransfera | 0.701 | 0.370 | 0.584 | 8.8e-61 | |
| UNIPROTKB|Q4R5L1 | 413 | GOT1 "Aspartate aminotransfera | 0.701 | 0.370 | 0.591 | 1.1e-60 | |
| FB|FBgn0001124 | 448 | Got1 "Glutamate oxaloacetate t | 0.701 | 0.341 | 0.616 | 2.3e-60 | |
| MGI|MGI:95791 | 413 | Got1 "glutamate oxaloacetate t | 0.701 | 0.370 | 0.578 | 2.9e-60 | |
| RGD|2721 | 413 | Got1 "glutamic-oxaloacetic tra | 0.701 | 0.370 | 0.584 | 9.9e-60 |
| UNIPROTKB|P00503 GOT1 "Aspartate aminotransferase, cytoplasmic" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 4.8e-62, Sum P(2) = 4.8e-62
Identities = 94/159 (59%), Positives = 113/159 (71%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C+PWVLPVVR+ E+ +A D SLNHEYLP+LGL F + A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCQPWVLPVVRKVEQRIANDSSLNHEYLPILGLAEFRTCASRLALGDD-SPALQE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GAEFL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
YRYW+ EKR +D G DL NAP+ S+ +LHACAHNPT
Sbjct: 159 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPT 197
|
|
| ZFIN|ZDB-GENE-040426-2003 got1 "glutamic-oxaloacetic transaminase 1, soluble" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 491 (177.9 bits), Expect = 1.6e-61, Sum P(2) = 1.6e-61
Identities = 92/159 (57%), Positives = 114/159 (71%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+EC+PWVLPVVR+ EK +A D SLNHEYLP+LGL F S+A+++ LG D SP ++E
Sbjct: 37 AYRTDECQPWVLPVVRKVEKMIADDHSLNHEYLPILGLPEFRSSASKIALGED-SPAIKE 95
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILN-----YTTFYYSKPTWENHRLVFLNAGFTEARE 130
R VQ L GTGAL++GAEFL R N T Y S PTWENH VF NAGF + R
Sbjct: 96 NRVGAVQCLGGTGALKIGAEFLRRWYNGTDNTKTPVYVSAPTWENHNAVFSNAGFEDIRP 155
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
Y+YW+P KR +D G D+ +APD+S+ +LHACAHNPT
Sbjct: 156 YKYWDPVKRGLDLAGFLGDMESAPDHSIFVLHACAHNPT 194
|
|
| UNIPROTKB|Q5R691 GOT1 "Aspartate aminotransferase, cytoplasmic" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 6.9e-61, Sum P(2) = 6.9e-61
Identities = 93/159 (58%), Positives = 116/159 (72%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
YRYW+ EKR +D G+ DL NAP+ S+++LHACAHNPT
Sbjct: 159 YRYWDAEKRGLDLQGLLNDLENAPEFSIVVLHACAHNPT 197
|
|
| UNIPROTKB|B7Z7E9 GOT1 "Aspartate aminotransferase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 93/159 (58%), Positives = 115/159 (72%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 19 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 77
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 78 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 137
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
YRYW+ EKR +D G DL NAP+ S+++LHACAHNPT
Sbjct: 138 YRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPT 176
|
|
| UNIPROTKB|P17174 GOT1 "Aspartate aminotransferase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 93/159 (58%), Positives = 115/159 (72%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
YRYW+ EKR +D G DL NAP+ S+++LHACAHNPT
Sbjct: 159 YRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPT 197
|
|
| UNIPROTKB|A5A6K8 GOT1 "Aspartate aminotransferase, cytoplasmic" [Pan troglodytes (taxid:9598)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
Identities = 93/159 (58%), Positives = 115/159 (72%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
YRYW+ EKR +D G DL NAP+ S+++LHACAHNPT
Sbjct: 159 YRYWDAEKRGLDLQGFLNDLENAPEFSIVVLHACAHNPT 197
|
|
| UNIPROTKB|Q4R5L1 GOT1 "Aspartate aminotransferase, cytoplasmic" [Macaca fascicularis (taxid:9541)] | Back alignment and assigned GO terms |
|---|
Score = 494 (179.0 bits), Expect = 1.1e-60, Sum P(2) = 1.1e-60
Identities = 94/159 (59%), Positives = 115/159 (72%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C PWVLPVV++ E+++A D+SLNHEYLP+LGL F S A+R+ LG D SP L+E
Sbjct: 40 AYRTDDCHPWVLPVVKKVEQKIANDNSLNHEYLPILGLAEFRSCASRLALGDD-SPALKE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTT-----FYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 KRVGGVQSLGGTGALRIGADFLARWYNGTNNKNTPVYVSSPTWENHNAVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
YRYW+ EKR +D G DL NAP+ S+I+LHACAHNPT
Sbjct: 159 YRYWDAEKRGLDLQGFLNDLENAPEFSIIVLHACAHNPT 197
|
|
| FB|FBgn0001124 Got1 "Glutamate oxaloacetate transaminase 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 519 (187.8 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
Identities = 95/154 (61%), Positives = 117/154 (75%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+ PWVLPVVR+ E +A+D+ +NHEYLPV GLE+F++AAT ++LG D SP ++E
Sbjct: 69 AYRTDAGVPWVLPVVRKTEISIASDEQVNHEYLPVTGLETFTNAATELVLGAD-SPAIKE 127
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
RAFGVQT+SGTGALRV A+FLH LN YYS PTWENH +F +AGFT + YRYW+
Sbjct: 128 NRAFGVQTISGTGALRVAADFLHTQLNRNVVYYSNPTWENHHKIFCDAGFTTVKSYRYWD 187
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
KR +DF M DL +AP +VIILHACAHNPT
Sbjct: 188 QNKRELDFKNMLADLNDAPPGAVIILHACAHNPT 221
|
|
| MGI|MGI:95791 Got1 "glutamate oxaloacetate transaminase 1, soluble" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
Identities = 92/159 (57%), Positives = 113/159 (71%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT+E +PWVLPVVR+ E+++A D+SLNHEYLP+LGL F S A+R++LG D S +RE
Sbjct: 40 AYRTDESQPWVLPVVRKVEQKIANDNSLNHEYLPILGLAEFRSCASRLVLG-DNSLAIRE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILN-----YTTFYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 NRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPIYVSSPTWENHNAVFSAAGFKDIRP 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
Y YW+ EKR +D G DL NAP+ S+ +LHACAHNPT
Sbjct: 159 YCYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPT 197
|
|
| RGD|2721 Got1 "glutamic-oxaloacetic transaminase 1, soluble (aspartate aminotransferase 1)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 93/159 (58%), Positives = 114/159 (71%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++ +PWVLPVVR+ E+++A D SLNHEYLP+LGL F S A++++LG D SP LRE
Sbjct: 40 AYRTDDSQPWVLPVVRKVEQKIANDHSLNHEYLPILGLAEFRSCASQLVLG-DNSPALRE 98
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILN-----YTTFYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GA+FL R N T Y S PTWENH VF AGF + R
Sbjct: 99 NRVGGVQSLGGTGALRIGADFLGRWYNGTDNKNTPVYVSSPTWENHNGVFSAAGFKDIRS 158
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
YRYW+ EKR +D G DL NAP+ S+ +LHACAHNPT
Sbjct: 159 YRYWDAEKRGLDLQGFLNDLENAPEFSIFVLHACAHNPT 197
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q22067 | AATC_CAEEL | 2, ., 6, ., 1, ., 1 | 0.5870 | 0.7064 | 0.3774 | yes | N/A |
| P33097 | AATC_BOVIN | 2, ., 6, ., 1, ., 1 | 0.5027 | 0.7660 | 0.4043 | yes | N/A |
| P37833 | AATC_ORYSJ | 2, ., 6, ., 1, ., 1 | 0.5128 | 0.7064 | 0.3783 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 218 | |||
| PLN02397 | 423 | PLN02397, PLN02397, aspartate transaminase | 3e-66 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 4e-62 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 7e-59 | |
| PRK09257 | 396 | PRK09257, PRK09257, aromatic amino acid aminotrans | 3e-50 | |
| pfam00155 | 357 | pfam00155, Aminotran_1_2, Aminotransferase class I | 1e-23 | |
| PTZ00376 | 404 | PTZ00376, PTZ00376, aspartate aminotransferase; Pr | 2e-16 | |
| PLN02397 | 423 | PLN02397, PLN02397, aspartate transaminase | 3e-14 | |
| COG1448 | 396 | COG1448, TyrB, Aspartate/tyrosine/aromatic aminotr | 8e-11 | |
| PRK09257 | 396 | PRK09257, PRK09257, aromatic amino acid aminotrans | 1e-10 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 1e-05 |
| >gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase | Back alignment and domain information |
|---|
Score = 209 bits (534), Expect = 3e-66
Identities = 81/154 (52%), Positives = 102/154 (66%), Gaps = 3/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRTEE KP VL VVR+AE+ L S N EYLP+ GL F+ + ++ G D SP ++E
Sbjct: 57 AYRTEEGKPVVLNVVRKAEQRLL-AGSRNKEYLPIEGLAEFNKLSAKLAYGAD-SPAIKE 114
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R VQ LSGTG+LR+GAEFL R +T Y PTW NH +F +AG R YRY++
Sbjct: 115 NRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGV-PVRTYRYYD 173
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
P+ R +DF G+ EDL APD S ++LHACAHNPT
Sbjct: 174 PKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPT 207
|
Length = 423 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 198 bits (506), Expect = 4e-62
Identities = 94/203 (46%), Positives = 124/203 (61%), Gaps = 16/203 (7%)
Query: 15 NAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLR 74
AYR E KP+VL VR+AEK +A + +L+ EYLP+ GL+SF AA ++L G +AS L
Sbjct: 37 GAYRDENGKPYVLESVRKAEKIIA-EKNLDKEYLPIEGLQSFIEAAQKLLFG-EASYALA 94
Query: 75 EGRAFGVQTLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRY 133
E R VQ LSGTGALR+G EFL R L TT Y S PTW NH +F +AG +EYRY
Sbjct: 95 EKRIATVQALSGTGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGL-NVKEYRY 153
Query: 134 WNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAH-MVDKHHVYL 184
++P+ + +DF GM EDL AP+ SV++LHACAHNPT +++A M K+ +
Sbjct: 154 YDPKTKGLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPF 213
Query: 185 LRSGRINMCGLTTQNLDHVAQAI 207
G + +LD A AI
Sbjct: 214 FDMAYQ---GFASGDLDKDAYAI 233
|
Length = 404 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 189 bits (483), Expect = 7e-59
Identities = 71/154 (46%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ E+ K VL V++AEK L + YLP+ GL F A + LL G SP L E
Sbjct: 35 VYKDEDGKTPVLRAVKKAEKRLLEQE-KTKNYLPIEGLPEFLEAVQK-LLFGADSPALAE 92
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R VQTL GTGALRV A+FL R T + S PTW NH+ +F AG E Y Y++
Sbjct: 93 DRVATVQTLGGTGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGL-EVETYPYYD 151
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
E + +DF GM DL AP+ SV++LH C HNPT
Sbjct: 152 AETKGLDFDGMLADLKTAPEGSVVLLHGCCHNPT 185
|
Length = 396 |
| >gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 3e-50
Identities = 65/153 (42%), Positives = 86/153 (56%), Gaps = 3/153 (1%)
Query: 17 YRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG 76
Y+ E+ + VL V++AE L ++ YLP+ GL ++ A +L G D SP L G
Sbjct: 36 YKDEQGRTPVLRAVKKAEARLLETET-TKNYLPIEGLAAYRQAVQELLFGAD-SPALAAG 93
Query: 77 RAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP 136
R VQT GTGALRVGA+FL R + S PTW NHR +F AG E + Y Y++
Sbjct: 94 RVATVQTPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGL-EVKTYPYYDA 152
Query: 137 EKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+ +DF M DL AP V++LH C HNPT
Sbjct: 153 ATKGLDFDAMLADLSQAPAGDVVLLHGCCHNPT 185
|
Length = 396 |
| >gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 1e-23
Identities = 48/179 (26%), Positives = 75/179 (41%), Gaps = 16/179 (8%)
Query: 15 NAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLR 74
N Y + LP V +AEK+ A + + Y P GL A + LG SP L+
Sbjct: 9 NEYLGDS---GTLPAVAKAEKDALAGGTR-NLYGPTDGLPELREALAK-FLGR--SPVLK 61
Query: 75 EGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW 134
R V SG GA FL R+ PT+ ++ +F AG E Y +
Sbjct: 62 LDREAAVVFGSGAGANIEALIFLLRLNPGDAILVPAPTYPSYIRIFRLAGG-EVVRYPLY 120
Query: 135 NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHVYLL 185
+ +DF + L A + + ++LH HNPT +++ + +H++ LL
Sbjct: 121 SSNDFHLDFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEELEKLLDLAKEHNILLL 179
|
Length = 357 |
| >gnl|CDD|240390 PTZ00376, PTZ00376, aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-16
Identities = 23/48 (47%), Positives = 39/48 (81%)
Query: 167 NPTAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
T +QV +++K+H+YLL +GRI++ GLT++N+D+VA+AIHD V ++
Sbjct: 357 GLTKEQVERLIEKYHIYLLDNGRISVAGLTSKNVDYVAEAIHDVVRNV 404
|
Length = 404 |
| >gnl|CDD|215222 PLN02397, PLN02397, aspartate transaminase | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 3e-14
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSIP 215
+QV M ++H+Y+ R GRI+M GL+++N+ ++A AIH VT+
Sbjct: 377 NKEQVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHAVVTNAS 423
|
Length = 423 |
| >gnl|CDD|224365 COG1448, TyrB, Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 8e-11
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+ +QV + ++ +YL+ SGRIN+ GL T N+D+VA+AI +
Sbjct: 354 SPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAVL 396
|
Length = 396 |
| >gnl|CDD|181731 PRK09257, PRK09257, aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 1e-10
Identities = 18/39 (46%), Positives = 27/39 (69%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAI 207
T +QV + ++ VY + SGRIN+ GL N+D+VA+AI
Sbjct: 354 TPEQVDRLREEFGVYAVGSGRINVAGLNESNIDYVAEAI 392
|
Length = 396 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-05
Identities = 16/108 (14%), Positives = 31/108 (28%), Gaps = 3/108 (2%)
Query: 73 LREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYR 132
L+ G V SGTGA L + + V +
Sbjct: 13 LQPGNDKAVFVPSGTGANEAALLAL--LGPGDEVIVDANGHGSRYWVAAELAGAKPVPVP 70
Query: 133 YWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDKH 180
+ +D + E+L P+ ++I++ + + K
Sbjct: 71 VDDAGYGGLDVAIL-EELKAKPNVALIVITPNTTSGGVLVPLKEIRKI 117
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 100.0 | |
| KOG1412|consensus | 410 | 100.0 | ||
| KOG1411|consensus | 427 | 100.0 | ||
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 100.0 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 100.0 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 100.0 | |
| PLN02397 | 423 | aspartate transaminase | 100.0 | |
| KOG0257|consensus | 420 | 99.97 | ||
| PLN02368 | 407 | alanine transaminase | 99.97 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.96 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.96 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.96 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.96 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.96 | |
| PLN02187 | 462 | rooty/superroot1 | 99.95 | |
| PLN02656 | 409 | tyrosine transaminase | 99.95 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.95 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.95 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.95 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.95 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.95 | |
| PRK07324 | 373 | transaminase; Validated | 99.95 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.94 | |
| KOG0259|consensus | 447 | 99.94 | ||
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.94 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.94 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.94 | |
| PLN02231 | 534 | alanine transaminase | 99.94 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.94 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.94 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.94 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.94 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.93 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.93 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.93 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.93 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.93 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.93 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.93 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.92 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.92 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.92 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.92 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.92 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.92 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.92 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.92 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.92 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.92 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.91 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.91 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.91 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.91 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.91 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.9 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.9 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.9 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.89 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.89 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.89 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.89 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.89 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.89 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.88 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.88 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.88 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.87 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.87 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.87 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.87 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.87 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.86 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.84 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.84 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.84 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.82 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.82 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.81 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.8 | |
| KOG0258|consensus | 475 | 99.8 | ||
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.79 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.76 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.74 | |
| KOG0256|consensus | 471 | 99.73 | ||
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.72 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.72 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.71 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.71 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.69 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.69 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.68 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.66 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.62 | |
| KOG0634|consensus | 472 | 99.61 | ||
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 99.61 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.6 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.59 | |
| PLN02721 | 353 | threonine aldolase | 99.57 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.56 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 99.54 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.53 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 99.52 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.52 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.49 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.47 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 99.47 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 99.46 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.46 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 99.45 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 99.44 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.44 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.44 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.43 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.43 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.43 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.43 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 99.42 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.42 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.42 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.42 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 99.4 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.4 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 99.4 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.39 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.39 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.38 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.38 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 99.38 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.36 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.36 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.36 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.35 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 99.35 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.35 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 99.35 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.34 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.34 | |
| KOG1412|consensus | 410 | 99.33 | ||
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.33 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.33 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.33 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 99.32 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 99.32 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.32 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.31 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.31 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.31 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.3 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 99.3 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.29 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.29 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.28 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.28 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.27 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.27 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 99.27 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.27 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.27 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.27 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.27 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.23 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.23 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.23 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.22 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.21 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.2 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.2 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.2 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.19 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.19 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.19 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.19 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.18 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.17 | |
| PLN02651 | 364 | cysteine desulfurase | 99.17 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.16 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.16 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.15 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.15 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.15 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.14 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.13 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.13 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.12 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.12 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.11 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.1 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.1 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.08 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.06 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.04 | |
| KOG0633|consensus | 375 | 99.01 | ||
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 99.01 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.0 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 98.98 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 98.93 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 98.91 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 98.89 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 98.88 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 98.86 | |
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 98.8 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 98.79 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 98.78 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 98.77 | |
| KOG1411|consensus | 427 | 98.76 | ||
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 98.74 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 98.74 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 98.73 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 98.71 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 98.7 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.69 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 98.68 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 98.66 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 98.64 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 98.64 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 98.62 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 98.62 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 98.54 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 98.53 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 98.46 | |
| KOG1549|consensus | 428 | 98.45 | ||
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 98.45 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 98.42 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 98.41 | |
| PLN02263 | 470 | serine decarboxylase | 98.37 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 98.37 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 98.36 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 98.36 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 98.33 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 98.33 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 98.31 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 98.27 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 98.26 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 98.23 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 98.16 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 98.15 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 98.15 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 98.12 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 98.11 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 98.04 | |
| PLN00144 | 382 | acetylornithine transaminase | 98.03 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 97.99 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 97.91 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 97.88 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 97.86 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 97.85 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 97.81 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 97.8 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 97.79 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 97.78 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 97.77 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 97.75 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 97.73 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 97.67 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 97.64 | |
| PLN02880 | 490 | tyrosine decarboxylase | 97.6 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 97.57 | |
| KOG0053|consensus | 409 | 97.54 | ||
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 97.54 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 97.52 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 97.49 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 97.47 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 97.47 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 97.45 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 97.44 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 97.43 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 97.43 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 97.42 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 97.41 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 97.39 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 97.37 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 97.37 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 97.36 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 97.35 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 97.34 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 97.33 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 97.32 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 97.29 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 97.25 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 97.24 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 97.24 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 97.04 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 97.03 | |
| KOG1368|consensus | 384 | 96.98 | ||
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 96.92 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 96.91 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 96.9 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 96.86 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 96.86 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 96.85 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 96.75 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 96.61 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 96.6 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 96.57 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 96.56 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 96.53 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 96.52 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 96.5 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 96.5 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 96.42 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 96.42 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 96.29 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 96.29 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.21 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 96.16 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 96.14 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 96.09 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 96.06 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 96.05 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 96.01 | |
| PRK07046 | 453 | aminotransferase; Validated | 95.95 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 95.94 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 95.88 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 95.83 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 95.79 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 95.79 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 95.75 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 95.74 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.7 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 95.66 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 95.62 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 95.61 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.59 | |
| PRK07678 | 451 | aminotransferase; Validated | 95.56 | |
| KOG2862|consensus | 385 | 95.56 | ||
| PRK07480 | 456 | putative aminotransferase; Validated | 95.52 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 95.51 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.28 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 95.26 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.26 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 95.22 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 95.2 | |
| PRK06105 | 460 | aminotransferase; Provisional | 95.2 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 95.19 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 95.06 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 95.05 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 94.92 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 94.83 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 94.76 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 94.59 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 94.54 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 94.42 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 93.98 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 93.64 | |
| PLN02397 | 423 | aspartate transaminase | 93.17 | |
| KOG1401|consensus | 433 | 92.92 | ||
| PRK06148 | 1013 | hypothetical protein; Provisional | 92.47 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 92.45 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 92.21 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 91.58 | |
| KOG1383|consensus | 491 | 91.57 | ||
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 91.25 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 90.39 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 88.53 | |
| PLN02452 | 365 | phosphoserine transaminase | 84.65 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 84.04 | |
| KOG1404|consensus | 442 | 83.49 | ||
| KOG0628|consensus | 511 | 82.79 | ||
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 81.6 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 80.32 |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=289.41 Aligned_cols=201 Identities=38% Similarity=0.630 Sum_probs=188.5
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
...|||+||+|+|++|++|++++|++|.+.+.++ ...+.|.|+.|+++|++++++.+|| .+.+.+..+|+..++|+||
T Consensus 26 ~~KVNLgIGvY~de~Gk~pvl~aV~~Ae~~l~~~-~~~k~Yl~i~G~~~f~~~~~~llFG-~d~~~l~~~Rv~t~Qt~GG 103 (396)
T COG1448 26 PNKVNLGIGVYKDEDGKTPVLRAVKKAEKRLLEQ-EKTKNYLPIEGLPEFLEAVQKLLFG-ADSPALAEDRVATVQTLGG 103 (396)
T ss_pred cCeeeeeeeeeeCCCCCcchhHHHHHHHHHhhcc-ccccccCCcCCcHHHHHHHHHHhcC-CCcHHHHhhhHhheecCCc
Confidence 3789999999999999999999999999998866 4678999999999999999999999 9888788899999999999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
|||+++++.++....|...||+++|+|++|.++|+.+|+ ++..||+|+.+...+||+.|.++|++++++++++++.|||
T Consensus 104 TGAL~~~A~fl~~~~~~~~vwis~PtW~NH~~If~~aGl-~v~~Y~Yyd~~~~~~df~~mla~L~~a~~~~vvLLH~CcH 182 (396)
T COG1448 104 TGALRVAADFLARFFPDATVWISDPTWPNHKAIFEAAGL-EVETYPYYDAETKGLDFDGMLADLKTAPEGSVVLLHGCCH 182 (396)
T ss_pred chHHHHHHHHHHHhCCCceEEeCCCCcHhHHHHHHhcCC-ceeeeeccccccccccHHHHHHHHHhCCCCCEEEEecCCC
Confidence 999999999998877888899999999999999999999 9999999999888999999999999998999999999999
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHHc
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTS 213 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~~ 213 (218)
||||. +|.++.+++++..+.| ++|.||..+ ++.+|++++..+..
T Consensus 183 NPTG~D~t~~qW~~l~~~~~~r~lip~~D--~AYQGF~~G-leeDa~~lR~~a~~ 234 (396)
T COG1448 183 NPTGIDPTEEQWQELADLIKERGLIPFFD--IAYQGFADG-LEEDAYALRLFAEV 234 (396)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCeeeee--hhhhhhccc-hHHHHHHHHHHHHh
Confidence 99997 6888899999999999 999999888 99999999988653
|
|
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=258.25 Aligned_cols=202 Identities=50% Similarity=0.876 Sum_probs=190.1
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
..+||++|.||+++|+||+.|.|+++...+.++...+|+|.|..|++.|+++.++.++| .+.+.+.++|+..+++.+|+
T Consensus 31 ~KvnL~igAYRtd~g~PWvLPvVk~~e~~i~~d~s~NHEYLpi~Gl~~F~~~A~el~lg-~~s~a~kE~Rv~~vQslsGT 109 (410)
T KOG1412|consen 31 VKVNLGIGAYRTDDGKPWVLPVVKKAEKKIANDQSLNHEYLPILGLPTFTKAATELLLG-ADSPAIKEDRVFGVQSLSGT 109 (410)
T ss_pred ceeecccceEEcCCCCeeEehhhhhhhhhccCchhccchhccccCchhhhhhhHHHhcC-CCchhhhhccccceeecccc
Confidence 46899999999999999999999999888876645679999999999999999999999 99988999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
||+++++.++.++.+-..|++++|+|++|..+++.+|++++..|++|+.+..++|++.+..+|+.++++++++++.|.||
T Consensus 110 GAl~~~A~Fl~~~~~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~APe~si~iLhaCAhN 189 (410)
T KOG1412|consen 110 GALRIAADFLATFYNKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESAPEGSIIILHACAHN 189 (410)
T ss_pred chhhhhHHHHHHhcccceeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhCCCCcEEeeeccccC
Confidence 99999999998877789999999999999999999998789999999999899999999999999999999999999999
Q ss_pred CcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHH
Q psy6266 168 PTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVT 212 (218)
Q Consensus 168 PTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~ 212 (218)
|||. ||++..++++++.+.| ++|.|+..+++|.+|||++..|.
T Consensus 190 PTGmDPT~EQW~qia~vik~k~lf~fFD--iAYQGfASGD~~~DawAiR~fV~ 240 (410)
T KOG1412|consen 190 PTGMDPTREQWKQIADVIKSKNLFPFFD--IAYQGFASGDLDADAWAIRYFVE 240 (410)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCceeeee--hhhcccccCCccccHHHHHHHHh
Confidence 9997 7888889999999999 99999999999999999999886
|
|
| >KOG1411|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=257.36 Aligned_cols=200 Identities=45% Similarity=0.773 Sum_probs=187.9
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
..|||++|.|||++|+|.++++|++|.++++.. ....+|.|+.|+++|++..+++.+| .+.+.+.++||..++|.+|+
T Consensus 53 ~KiNLgvGaYRdd~gKp~vL~~VrkAE~ql~~~-~ldKEYlpI~Gl~eF~k~sakLa~G-~~s~~ik~~Ri~tvQ~lSGT 130 (427)
T KOG1411|consen 53 KKINLGVGAYRDDNGKPYVLPSVRKAEQQLASL-SLDKEYLPITGLAEFNKLSAKLALG-DNSPVIKEKRIVTVQTLSGT 130 (427)
T ss_pred ceeeecccceecCCCCeeeeHHHHHHHHHHhhh-cccchhccccchHHHHHHHHHHhhc-CCchhhhccceeEEEeccCc
Confidence 467999999999999999999999999988763 5678999999999999999999999 99988999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
||+++++.+|.+..|+..|++|+|+|+||..+++.+|+ .+..|.++.....++|++.+.++|.+.+++++++++.|+||
T Consensus 131 GaLriga~Fl~~f~~~~~I~ip~PTWgNh~~if~~ag~-~~~~yrYyd~~t~gld~~g~ledl~~~p~gs~ilLhaCaHN 209 (427)
T KOG1411|consen 131 GALRVGAEFLARFYPSRDIYIPDPTWGNHKNIFKDAGL-PVKFYRYYDPKTRGLDFKGMLEDLGEAPEGSIILLHACAHN 209 (427)
T ss_pred chhhHHHHHHHhhccccceeecCCcccccCccccccCc-ceeeeeeccccccccchHHHHHHHhcCCCCcEEEeehhhcC
Confidence 99999999998888999999999999999999999999 89999999888899999999999999889999999999999
Q ss_pred CcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHH
Q psy6266 168 PTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVT 212 (218)
Q Consensus 168 PTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~ 212 (218)
|||. +|.++.++++.+.+.| ++|.||..+++|.+|++++-.+.
T Consensus 210 PTGvDPt~eqw~ki~~~~~~k~~~pffD--mAYQGfaSG~~d~DA~avR~F~~ 260 (427)
T KOG1411|consen 210 PTGVDPTKEQWEKISDLIKEKNLLPFFD--MAYQGFASGDLDKDAQAVRLFVE 260 (427)
T ss_pred CCCCCccHHHHHHHHHHhhhccccchhh--hhhcccccCCchhhHHHHHHHHH
Confidence 9997 5778889999999999 99999999999999999987765
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-36 Score=263.19 Aligned_cols=176 Identities=12% Similarity=0.042 Sum_probs=152.8
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
+++|||++|. +++++|+++++|+.+++.+ +.. +|+|+.|+++||+++++++.+ +++..+++++ .+++|.|+
T Consensus 28 ~~vi~l~iG~-----Pd~~~p~~i~~a~~~a~~~-~~~-~Y~~~~G~~~LReaia~~~~~-~~~~~~~~~~-eiivt~Ga 98 (393)
T COG0436 28 EDVIDLSIGE-----PDFPTPEHIIEAAIEALEE-GGT-HYTPSAGIPELREAIAEKYKR-RYGLDVDPEE-EIIVTAGA 98 (393)
T ss_pred CCEEEeCCCC-----CCCCCCHHHHHHHHHHHhc-ccC-CCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCC-eEEEeCCH
Confidence 5799999994 4668999999998887754 223 788999999999999999987 7765566665 13699999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC-cCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP-EKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++|+.++++++ ++|||+|++|+|+|++|..+++++|+ +++.+++... +.+.+|++.+++++. +++++++.|+|
T Consensus 99 ~~al~~~~~a~--~~pGDeVlip~P~Y~~y~~~~~~~gg-~~v~v~l~~~~~~f~~d~~~l~~~i~---~ktk~i~ln~P 172 (393)
T COG0436 99 KEALFLAFLAL--LNPGDEVLIPDPGYPSYEAAVKLAGG-KPVPVPLDEEENGFKPDLEDLEAAIT---PKTKAIILNSP 172 (393)
T ss_pred HHHHHHHHHHh--cCCCCEEEEeCCCCcCHHHHHHhcCC-EEEEEeCCcCccCCcCCHHHHHhhcC---ccceEEEEeCC
Confidence 99999999988 89999999999999999999999999 9999987433 368889999998885 46777888999
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
|||||. +|+++|++|++|||+| |+|++|.|+.
T Consensus 173 ~NPTGav~~~~~l~~i~~~a~~~~i~ii~D--EiY~~l~yd~ 212 (393)
T COG0436 173 NNPTGAVYSKEELKAIVELAREHDIIIISD--EIYEELVYDG 212 (393)
T ss_pred CCCcCcCCCHHHHHHHHHHHHHcCeEEEEe--hhhhhcccCC
Confidence 999998 7999999999999999 9999999985
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=246.42 Aligned_cols=187 Identities=36% Similarity=0.641 Sum_probs=158.6
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..+|||++|.+.+++++++..+.+++|..++.++ +...+|.+..|.++||+++++++.+ .++..+++++|.+++|.|+
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~-~~~~~Y~~~~G~~~lR~aia~~~~~-~~~~~~~~~~i~v~iT~Ga 103 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLET-ETTKNYLPIEGLAAYRQAVQELLFG-ADSPALAAGRVATVQTPGG 103 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhccc-ccCCCcCCCCCCHHHHHHHHHHhcC-CCCcccccCeEEEEecCCc
Confidence 3689999999877777666568999998887643 2455799999999999999999987 7655456777656799999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++|+.++++++..++|||+|++++|+|+.|..+++..|+ +++.+|+...+.+++|++.+++.+.+..++++++++++||
T Consensus 104 ~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~~~~~~~~g~-~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~~~i~~~p~ 182 (396)
T PRK09257 104 TGALRVGADFLKRAFPDAKVWVSDPTWPNHRAIFEAAGL-EVKTYPYYDAATKGLDFDAMLADLSQAPAGDVVLLHGCCH 182 (396)
T ss_pred cHHHHHHHHHHHHhCCCCeEEECCCCcccHHHHHHHcCC-cEEEEeccccccCccCHHHHHHHHHhCCCCCEEEEeCCCC
Confidence 999999988765468999999999999999999999999 9999998544457899999999887544556788889999
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||. +|+++|++|+++||+| ++|.++.++
T Consensus 183 NPTG~~~s~~~~~~l~~~a~~~~~~ii~D--e~Y~~l~~~ 220 (396)
T PRK09257 183 NPTGADLTPEQWDELAELLKERGLIPFLD--IAYQGFGDG 220 (396)
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCcEEEEe--ccccccccc
Confidence 99997 7899999999999999 999999864
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-32 Score=241.06 Aligned_cols=189 Identities=46% Similarity=0.771 Sum_probs=157.4
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.++|||++|.+.+++++..+.+.+++|..++... ...++|+|+.|+++||+++++++.+ .++..+++++|...+|.|+
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~~~-~~~~~Y~~~~G~~~lR~aia~~~~~-~~~~~~~~~~v~~~~t~G~ 106 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIAEK-NLDKEYLPIEGLQSFIEAAQKLLFG-EASYALAEKRIATVQALSG 106 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhccc-cCCCCCCCCCCCHHHHHHHHHHhcC-CCccccccCeEEEeeccCc
Confidence 5789999999876777666677888887665532 3457899999999999999999987 6655567777754579999
Q ss_pred hhHHHHHHHHHHH-hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHR-ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~-l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++|+.++++++.. ++|||+|++++|+|+.|..+++..|+ +++.+|+..++.+++|++.+++.+++.++++.++++++|
T Consensus 107 ~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~~~~~~~~G~-~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~p 185 (404)
T PTZ00376 107 TGALRLGFEFLKRFLPAGTTVYVSNPTWPNHVNIFKSAGL-NVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLLHACA 185 (404)
T ss_pred chHHHHHHHHHHHhcCCCCEEEEcCCCchhHHHHHHHcCC-ceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEEeCCC
Confidence 9999998765432 58999999999999999999999999 999999854445789999999998754345677888999
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCH
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNL 200 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni 200 (218)
|||||. +|+++|++|+++||+| ++|.++.++..
T Consensus 186 ~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D--e~Y~~~~~~~~ 226 (404)
T PTZ00376 186 HNPTGVDPTEEQWKEIADVMKRKNLIPFFD--MAYQGFASGDL 226 (404)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCcEEEEe--hhhcCccCCCH
Confidence 999997 7889999999999999 99999999754
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=239.13 Aligned_cols=189 Identities=44% Similarity=0.747 Sum_probs=155.9
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
+..+|||++|.+.++++.++..+.++++...++.. +..++|+|+.|+++||+++++++++ .+.....+++|...++.+
T Consensus 47 ~~~~l~l~~g~~p~~~~~p~~~~~~~~a~~~~~~~-~~~~~Y~~~~G~~~LR~aia~~~~~-~~~~~~~~~~i~~~~i~~ 124 (423)
T PLN02397 47 SPVKLNLGVGAYRTEEGKPVVLNVVRKAEQRLLAG-SRNKEYLPIEGLAEFNKLSAKLAYG-ADSPAIKENRVATVQCLS 124 (423)
T ss_pred CcceEecccceeeCCCCCcccchHHHHHHHHhhcc-CCCCCCCCcCCCHHHHHHHHHHHcC-CCCchhhcCeeEeeeccc
Confidence 45789999999888888777889999988776533 3455899999999999999999987 665444445564456778
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++|+..+++.++..++|||+|++++|+|++|..+++..|+ +++.+++...+.+++|++.+.+.+++.+++++++++++|
T Consensus 125 g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~g~-~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P 203 (423)
T PLN02397 125 GTGSLRLGAEFLARFYPGSTIYIPNPTWGNHHNIFRDAGV-PVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACA 203 (423)
T ss_pred chHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHcCC-eEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCC
Confidence 7788766665555467999999999999999999999999 999998854445788999999888754456788888999
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
|||||. +|+++|++|+++||+| ++|.+|.+++
T Consensus 204 ~NPTG~v~s~e~l~~i~~~a~~~~~~vI~D--e~Y~~l~~~~ 243 (423)
T PLN02397 204 HNPTGVDPTPEQWEQISDLIKSKNHLPFFD--SAYQGFASGD 243 (423)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCcEEEEe--cccCCccCCc
Confidence 999997 7889999999999999 9999999875
|
|
| >KOG0257|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=230.12 Aligned_cols=179 Identities=15% Similarity=0.073 Sum_probs=150.9
Q ss_pred ceee-eeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEecc
Q psy6266 8 IHCC-EIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQTLS 85 (218)
Q Consensus 8 ~~i~-l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t~G 85 (218)
.+.+ |++|. +++++|+.|.+|++.++.+ ...++|++..|+|+||+++++.+.. .++....+ ++| +||.|
T Consensus 31 ~~~~~LgqGf-----p~~~~P~fv~ea~~~~~~~-~~~~qYt~~~G~p~L~~aL~k~~se-~~~~~~~~~~eV--lVT~G 101 (420)
T KOG0257|consen 31 KVPNPLGQGF-----PDFPPPKFVTEAAKNAAKE-PSTNQYTRGYGLPQLRKALAKAYSE-FYGGLLDPDDEV--LVTAG 101 (420)
T ss_pred CCCCcccCCC-----CCCCCcHHHHHHHHHHhcc-chhccccccCCchHHHHHHHHHHHH-HhccccCCcccE--EEecC
Confidence 3445 99994 4668899999999998876 3578999999999999999998854 34433444 444 69999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEecc------CCcCccccHHHHHHHHhcCCCCcEE
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW------NPEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~------~~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
+.+++..+++.+ +++||+|++.+|+|++|...++++|+ +++.++.. ..+.+.+|++.++.++. +++.+
T Consensus 102 A~~ai~~~~~~l--~~~GDeVii~eP~fd~Y~~~~~maG~-tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t---~kTk~ 175 (420)
T KOG0257|consen 102 ANEAISSALLGL--LNPGDEVIVFEPFFDCYIPQVVMAGG-TPVFVPLKPKEGNVSSSDWTLDPEELESKIT---EKTKA 175 (420)
T ss_pred chHHHHHHHHHH--cCCCCEEEEecCcchhhhhHHhhcCC-cceeeccccccccccCccccCChHHHHhhcc---CCccE
Confidence 999999888887 89999999999999999999999999 89999885 34567779999988885 56777
Q ss_pred EEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHH
Q psy6266 160 ILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHV 203 (218)
Q Consensus 160 il~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~ 203 (218)
|+.|+||||||. +|+++|++|++++|+| ++|+.+.|+.-+.+
T Consensus 176 Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisD--evYe~~v~d~~~h~ 225 (420)
T KOG0257|consen 176 IILNTPHNPTGKVFSREELERIAELCKKHGLLVISD--EVYEWLVYDGNKHI 225 (420)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEh--hHhHHHhhCCCcce
Confidence 888999999998 7999999999999999 99999998864443
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.7e-30 Score=227.26 Aligned_cols=184 Identities=12% Similarity=0.038 Sum_probs=148.6
Q ss_pred CCCceeeeeeeEEeCCCCC------c----------------------cCchHHHHHHHHHhhcCCCCccCcCCCCcHHH
Q psy6266 5 SGEIHCCEIRNAYRTEECK------P----------------------WVLPVVRQAEKELAADDSLNHEYLPVLGLESF 56 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~------~----------------------~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~l 56 (218)
.|.++|+|++|.+ |.. + .+++.+++|.+.+....+..++|+++.|+++|
T Consensus 36 ~g~~vi~l~iG~P---d~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~p~~~i~~a~~~l~~~~~~~~~Y~~~~G~~~L 112 (407)
T PLN02368 36 EGKKIIFTNVGNP---HALGQKPLTFPRQVVALCQAPFLLDDPNVGLLFPADAIARAKHYLSLTSGGLGAYSDSRGLPGV 112 (407)
T ss_pred HhhhhhcccCCCh---hHcCCCCchHHHHHHHHhcCchhcCCccccccCCHHHHHHHHHHHhcCCCCCCCCCCCCCCHHH
Confidence 5889999999974 321 2 26778888766543221235689999999999
Q ss_pred HHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh-cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccC
Q psy6266 57 SSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI-LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135 (218)
Q Consensus 57 r~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l-~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~ 135 (218)
|+++++++.+ .++..+++++| ++|.|+++++.++++++ + +|||+|++++|+|+.|..+++..|+ +++.+++..
T Consensus 113 R~aia~~~~~-~~g~~~~~~~I--~it~Ga~~al~~~~~~l--~~~pGd~Vli~~P~Y~~y~~~~~~~g~-~~v~v~~~~ 186 (407)
T PLN02368 113 RKEVAEFIER-RDGYPSDPELI--FLTDGASKGVMQILNAV--IRGEKDGVLVPVPQYPLYSATISLLGG-TLVPYYLEE 186 (407)
T ss_pred HHHHHHHHHH-hcCCCCChhhE--EEcccHHHHHHHHHHHH--cCCCCCEEEEeCCCCccHHHHHHHcCC-EEEEEeccc
Confidence 9999999976 54545677776 59999999999998876 5 6999999999999999999999999 999999854
Q ss_pred CcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 136 PEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 136 ~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++.+++|++.+++.++.. ..++.+++.++||||||. +|.++|++|+++||+| |+|.+++|++
T Consensus 187 ~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~D--E~Y~~l~y~~ 259 (407)
T PLN02368 187 SENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGD--EVYQQNIYQD 259 (407)
T ss_pred ccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE--ccccccccCC
Confidence 445788999999988642 114555666789999998 7889999999999999 9999999864
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.9e-29 Score=220.96 Aligned_cols=183 Identities=13% Similarity=0.072 Sum_probs=150.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.+|.++|+|++|.+ |+.+.+++++.+++|..+.++. ....+|.|..|.++||+++++++.+ .++..+++++| ++|
T Consensus 29 ~~~~~~i~l~~G~p-~~~~~~~~p~~~~~a~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~g~~~~~~~I--~it 103 (409)
T PLN00143 29 DDHRLAISFGFGDP-SCFECFRTTNIAEDAIVEAVRS-AKFNSYAPTGGILPARRAIADYLSN-DLPYQLSPDDV--YLT 103 (409)
T ss_pred CCCCceeeCCCCCC-CCCCCCCCCHHHHHHHHHHHhC-cCCCCCCCCCCCHHHHHHHHHHHHh-hcCCCCCHhhE--EEe
Confidence 36789999999963 2225578899999998877754 2346799999999999999999976 65555777776 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++..++.+.+|++.+++.+. +++.+++.+
T Consensus 104 ~G~~~al~~~~~~l--~~~gd~v~v~~P~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~~~~~ 177 (409)
T PLN00143 104 LGCKHAAEIIIKVL--ARPEANILLPRPGFPDVETYAIFHHL-EIRHFDLLPEKGWEVDLDAVEAIAD---ENTIAMVII 177 (409)
T ss_pred cChHHHHHHHHHHH--cCCCCEEEEcCCCCcCHHHHHHHcCC-EEEEEeccCCCCCcCCHHHHHHhcc---cCCEEEEEE
Confidence 99999999999887 68999999999999999999999999 8999887434456789999987664 234445556
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|++|+++||+| ++|.++.+++
T Consensus 178 nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D--e~Y~~l~~~~ 219 (409)
T PLN00143 178 NPGNPCGSVYSYEHLNKIAETARKLGILVIAD--EVYGHIVFGS 219 (409)
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCeEEEE--ccccccccCC
Confidence 89999998 6889999999999999 9999998864
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-29 Score=225.70 Aligned_cols=180 Identities=13% Similarity=0.056 Sum_probs=148.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|.++|+|++|.+ ++.+ +++|+.+.++..+.+.. .++|++..|+++||+++++++.. +++..+++++| ++|
T Consensus 143 ~~g~~~i~l~~G~p-~~~~-~~~p~~~~~~~~~~~~~---~~~Y~~~~G~~~lReaia~~~~~-~~~~~~~~~~I--~it 214 (517)
T PRK13355 143 AAGTHILKLNIGNP-APFG-FRTPDEVVYDMAQQLTD---TEGYSDSKGLFSARKAIMQYAQL-KGLPNVDVDDI--YTG 214 (517)
T ss_pred HcCCCeEEecCcCC-CcCC-CCCCHHHHHHHHHHhhc---CCCCCCCcChHHHHHHHHHHHHh-cCCCCCChhHE--EEe
Confidence 36889999999963 1212 56788888887766532 45799999999999999999965 55544677776 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ ++|||+|++++|+|+.|...+++.|+ +++.+++..++.+.+|++.+++.+. +++.+++.+
T Consensus 215 ~G~~eal~~~~~~l--~~~Gd~Vli~~P~y~~y~~~~~~~g~-~~v~~~~~~~~~~~~d~~~l~~~~~---~~~k~i~i~ 288 (517)
T PRK13355 215 NGVSELINLSMSAL--LDDGDEVLIPSPDYPLWTACVNLAGG-TAVHYRCDEQSEWYPDIDDIRSKIT---SRTKAIVII 288 (517)
T ss_pred CcHHHHHHHHHHHh--CCCCCEEEEcCCCCcCHHHHHHHCCC-EEEEeecCcccCCCCCHHHHHHhcC---cCceEEEEE
Confidence 99999999999887 78999999999999999999999999 9999987544457789999988774 345556567
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|+++|++|+++||+| |+|.+|.|++
T Consensus 289 nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~D--E~Y~~~~~~~ 330 (517)
T PRK13355 289 NPNNPTGALYPREVLQQIVDIAREHQLIIFSD--EIYDRLVMDG 330 (517)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEe--hhhhhhcCCC
Confidence 89999997 6889999999999999 9999998874
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-29 Score=224.50 Aligned_cols=185 Identities=11% Similarity=0.007 Sum_probs=145.7
Q ss_pred CCCceeeeeeeEEeCCCCC------------ccC-------------chHHHHHHHHHhhc-CCCCccCcCCCCcHHHHH
Q psy6266 5 SGEIHCCEIRNAYRTEECK------------PWV-------------LPVVRQAEKELAAD-DSLNHEYLPVLGLESFSS 58 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~------------~~~-------------~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~ 58 (218)
.|.+||+|++|.+.+- |+ +.+ |..+.++..++.+. ......|+++.|+++||+
T Consensus 44 ~~~~vi~~~~G~p~~~-~~~~~~~~~~~~~~~~~p~~i~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~ 122 (481)
T PTZ00377 44 PFDSIVYCNIGNPQAL-GQKPLTFYRQVLSLVEYPFLLEDPSVSSLFPADVVARAKEYLNAIGGGTGAYTDSAGYPFVRK 122 (481)
T ss_pred CcceeEEcCCCChhhc-CCCCchHHHHHHHHccChhhhcCccccccCCHHHHHHHHHHHHhCCCcccCcCcccCCHHHHH
Confidence 3589999999974210 00 222 44677766655543 123467999999999999
Q ss_pred HHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh-cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc
Q psy6266 59 AATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI-LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE 137 (218)
Q Consensus 59 aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l-~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~ 137 (218)
++++++.. .++..+++++| ++|.|+++++.++++++ + +|||+|++++|+|+.|..+++..|+ +++.+++..++
T Consensus 123 aia~~~~~-~~g~~~~~~~I--~it~Ga~~al~~~~~~l--~~~~gD~Vlv~~P~y~~y~~~~~~~g~-~~v~v~~~~~~ 196 (481)
T PTZ00377 123 AVAAFIER-RDGVPKDPSDI--FLTDGASSGIKLLLQLL--IGDPSDGVMIPIPQYPLYSAAITLLGG-KQVPYYLDEEK 196 (481)
T ss_pred HHHHHHHH-hcCCCCChhhE--EEcCCHHHHHHHHHHHh--ccCCCCEEEECCCCchhHHHHHHHcCC-EEEEEEecccc
Confidence 99999976 55555777876 59999999999999887 6 6999999999999999999999999 99999885445
Q ss_pred CccccHHHHHHHHhcC-C--CCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 138 KRAVDFTGMYEDLVNA-P--DNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 138 ~~~~d~~~~~~~l~~~-~--~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+.+|++.+++.+... . .++.+++.++||||||. +|+++|++|+++||+| ++|.++.|+
T Consensus 197 ~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~D--e~Y~~l~~~ 266 (481)
T PTZ00377 197 GWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMAD--EVYQENIYD 266 (481)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe--hhhHhhccC
Confidence 5788999999988642 0 13444444689999998 7889999999999999 999998884
|
|
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=217.63 Aligned_cols=181 Identities=15% Similarity=0.087 Sum_probs=149.9
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|.++|+|++|.+ +.-+++++++.++++..++++. +....|.+..|+++||+++++++.. ..+..+++++| ++|.|
T Consensus 51 ~~~~i~l~~G~P-~~~~~~~~~~~~~~a~~~al~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~~~~~~~~~v--~it~G 125 (430)
T PLN00145 51 PRPVLPLGHGDP-SAFPCFRTAPEAEDAVAAALRS-GKYNSYSTCVGLLPARRAIAEYLSR-DLPYELSTDDI--YLTAG 125 (430)
T ss_pred CCCeeeCCCCCC-CCCCCCCCCHHHHHHHHHHHHc-CcCCCCCCCccCHHHHHHHHHHHhh-ccCCCCChhhE--EEeCC
Confidence 889999999953 1123467888999998877754 3345799999999999999999976 65555777776 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.+++.++ ++|||+|++++|+|+.|.......|+ +++.+++...+.+.+|++.+++.+. +++.+++.++|
T Consensus 126 ~~~al~l~~~~l--~~~Gd~Vlv~~P~y~~y~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~P 199 (430)
T PLN00145 126 CAQAIEIIMSVL--AQPGANILLPRPGYPLYEARAVFSGL-EVRHFDLLPERGWEVDLEGVEALAD---ENTVAMVIINP 199 (430)
T ss_pred HHHHHHHHHHHh--cCCCCEEEEcCCCCccHHHHHHHcCC-EEEEeeCCcccCCcCCHHHHHHHhC---cCceEEEEeCC
Confidence 999999999887 68999999999999999999999999 8999987544567789999987664 34455666789
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
|||||. +|.++|++++++||+| ++|.++.|++
T Consensus 200 ~NPtG~v~~~~~l~~i~~~a~~~~i~ii~D--e~Y~~~~~~~ 239 (430)
T PLN00145 200 NNPCGSVYSYEHLAKIAETARKLGILVIAD--EVYDHLTFGS 239 (430)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEe--ccchhhccCC
Confidence 999997 6888899999999999 9999998864
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-28 Score=213.57 Aligned_cols=179 Identities=12% Similarity=0.088 Sum_probs=144.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~ 82 (218)
+.|..+|+|++|. +++++++.++++..+...+ ....+|.+..|.++||+++++++.. ..+..++++ +| ++
T Consensus 27 ~~~~~~i~l~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~g~~~~~~~~I--~i 97 (388)
T PRK07366 27 AAGKELIDLSLGS-----SDLPAPAHALEAIAQSLHD-PSTHGYLLFHGTLDFREAAAQWYEQ-RFGLAVDPETEV--LP 97 (388)
T ss_pred hcCCCeEEeCCCC-----CCCCCCHHHHHHHHHHHhC-cccCCCCCCCCCHHHHHHHHHHHHH-hhCCcCCCcCeE--EE
Confidence 3578899999995 3356688888888776643 2456799999999999999999965 555446676 45 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++..++.+.+|++.+.+.+.. ++.+++.
T Consensus 98 t~Gs~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~i~l 171 (388)
T PRK07366 98 LIGSQEGTAHLPLAV--LNPGDFALLLDPGYPSHAGGVYLAGG-QIYPMPLRAENDFLPVFADIPTEVLA---QARLMVL 171 (388)
T ss_pred CCCcHHHHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHhcCC-EEEEEECCCccCCCCCHHHHHHhhcc---cceEEEE
Confidence 999999999999877 68999999999999999999999999 99999984333456688888776642 3344555
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|+++|++|+++||+| ++|.++.+++
T Consensus 172 ~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D--e~Y~~~~~~~ 214 (388)
T PRK07366 172 SYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHD--FPYVDLVFDG 214 (388)
T ss_pred eCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEe--cchhhcccCC
Confidence 689999998 6888999999999999 9999998753
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=217.45 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=145.6
Q ss_pred CCCCceeeeeeeEEeCCCC-CccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEEC-KPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|.++|+|++|. +++ ++.+|+.++++..++..+ ....+|+|..|.++||+++++++.. .++..+++++| ++
T Consensus 29 ~~g~~~~~~~~G~---p~~~~~~~p~~~~~a~~~~~~~-~~~~~Y~~~~G~~~LReaia~~~~~-~~g~~~~~~~I--~i 101 (433)
T PRK06855 29 KLGVKITWENIGD---PIAKGEKIPDWMKEIVAELVMD-DKSYGYCPTKGVLETREFLAELNNK-RGGAQITPDDI--IF 101 (433)
T ss_pred hccccccccccCC---CcccCCCCCHHHHHHHHHHhhc-CCCCCCCCCCCCHHHHHHHHHHHHh-ccCCCCCHhHE--EE
Confidence 4578999999995 332 467899999988877643 3456899999999999999999966 55555777876 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH-HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
|.|+++|+.+++. + ++|||+|++++|+|+.|... ....|+ +++.+++...+.+.+|++.+++.+.+. ++..+++
T Consensus 102 t~G~~~al~~~~~-l--~~~Gd~Vlv~~P~Y~~~~~~~~~~~g~-~~v~v~~~~~~~~~~d~~~l~~~~~~~-~~~~~i~ 176 (433)
T PRK06855 102 FNGLGDAIAKIYG-L--LRREARVIGPSPAYSTHSSAEAAHAGY-PPVTYRLDPENNWYPDLDDLENKVKYN-PSIAGIL 176 (433)
T ss_pred cCcHHHHHHHHHH-h--cCCCCeEEEeCCCCchHHHHHHHhcCC-eEEEEecccccCCCCCHHHHHHHHhcC-CCceEEE
Confidence 9999999998875 4 57999999999999999754 345587 888888743345678999999888642 2334455
Q ss_pred cccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 162 HACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 162 ~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
.++||||||. +|.++|++|+++||+| ++|.++.|++
T Consensus 177 l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~D--e~Y~~l~~~~ 220 (433)
T PRK06855 177 LINPDNPTGAVYPKEILREIVDIAREYDLFIICD--EIYNNIVYNG 220 (433)
T ss_pred EECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccccccCC
Confidence 5689999998 7889999999999999 9999998864
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-27 Score=216.01 Aligned_cols=180 Identities=13% Similarity=0.094 Sum_probs=149.0
Q ss_pred CCCceeeeeeeEEeCCC--CCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 5 SGEIHCCEIRNAYRTEE--CKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~--~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
.+.++|+|++|. ++ +.+.+++.+.++..++++. +...+|.|..|.++||+++++++.. ..+..+++++| ++
T Consensus 64 ~~~~vi~l~~Gd---p~~~p~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lR~aiA~~~~~-~~~~~~~~~~I--~i 136 (462)
T PLN02187 64 VNKTILPLGHGD---PSVYPCFRTCIEAEDAVVDVLRS-GKGNSYGPGAGILPARRAVADYMNR-DLPHKLTPEDI--FL 136 (462)
T ss_pred CCCCeEECCCCC---CCCCCCCCCCHHHHHHHHHHHhC-CCCCCCCCCCChHHHHHHHHHHHHH-hcCCCCCcccE--EE
Confidence 466999999994 44 3356778888888777654 3456899999999999999999965 54445777876 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++...+.+++|++.+++.+. +++.+++.
T Consensus 137 t~G~~~al~~~~~~l--~~pGd~Vlv~~P~y~~y~~~~~~~g~-~~~~~~l~~~~~~~~d~~~l~~~~~---~~~~~v~i 210 (462)
T PLN02187 137 TAGCNQGIEIVFESL--ARPNANILLPRPGFPHYDARAAYSGL-EVRKFDLLPEKEWEIDLEGIEAIAD---ENTVAMVV 210 (462)
T ss_pred eCCHHHHHHHHHHHh--cCCCCEEEEeCCCCccHHHHHHHcCC-EEEEEeCccccCCccCHHHHHHhcC---CCcEEEEE
Confidence 999999999999987 68999999999999999999999999 9999988544567889999987764 34555666
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|+++|++|+++||+| ++|.++.|++
T Consensus 211 ~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~D--E~Y~~l~f~~ 253 (462)
T PLN02187 211 INPNNPCGNVYSHDHLKKVAETARKLGIMVISD--EVYDRTIFGD 253 (462)
T ss_pred eCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEe--ccccccccCC
Confidence 789999997 6889999999999999 9999998863
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-27 Score=210.64 Aligned_cols=183 Identities=16% Similarity=0.107 Sum_probs=149.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.+|.++|+|++|.+ +....+++++.++++..+++.+ ...++|+|..|.++||+++++++.. ..+..+++++| ++|
T Consensus 28 ~~~~~~i~l~~G~p-~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~-~~g~~~~~~~i--~~t 102 (409)
T PLN02656 28 ENGKRVISLGMGDP-TAYSCFHTTHVAQEAVVDALQS-NKFNGYAPTVGLPQARRAIAEYLSR-DLPYKLSLDDV--FIT 102 (409)
T ss_pred ccCCeeeecCCCCC-CcCCCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCHHHHHHHHHHHHH-hcCCCCCcccE--EEe
Confidence 37899999999963 1113468899999998887754 3456899999999999999999965 55545677775 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.+++.++ ++|||+|++++|+|+.|....+..|+ +++.+++...+.+.+|++.+++.+.. ++.+++.+
T Consensus 103 ~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~i~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~ 176 (409)
T PLN02656 103 SGCTQAIDVALSML--ARPGANILLPRPGFPIYELCAAFRHL-EVRYVDLLPEKGWEVDLDAVEALADQ---NTVALVII 176 (409)
T ss_pred CChHHHHHHHHHHH--hCCCCeEEEeCCCCCcHHHHHHHcCC-EEEEEeCCCcCCCCCCHHHHHHHhcc---CceEEEEE
Confidence 99999999998877 67999999999999999999999999 89999885344567899999887743 34455556
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|++|+++||+| ++|.++.|++
T Consensus 177 ~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~~ 218 (409)
T PLN02656 177 NPGNPCGNVYSYQHLKKIAETAEKLKILVIAD--EVYGHLAFGS 218 (409)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe--hhhhhcccCC
Confidence 89999996 6889999999999999 9999998864
|
|
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=209.81 Aligned_cols=176 Identities=15% Similarity=0.069 Sum_probs=145.5
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t 83 (218)
.+..+|||++|.+ + +++++.++++..+++++ ..++|.+..|.++||+++++++.. ..+..++++ +| ++|
T Consensus 52 ~~~~~i~l~~G~P---~--~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~Lr~aia~~~~~-~~g~~~~~~~~I--~vt 121 (413)
T PLN00175 52 IKHGAINLGQGFP---N--FDGPDFVKEAAIQAIRD--GKNQYARGFGVPELNSAIAERFKK-DTGLVVDPEKEV--TVT 121 (413)
T ss_pred hcCCeEecCCCCC---C--CCCCHHHHHHHHHHHhc--CCCCcCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCCE--EEe
Confidence 3457899999963 3 45688899998887754 357899999999999999999965 545446665 45 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++.. +.+.+|++.+++.+.. ++.+++.+
T Consensus 122 ~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~-~~~~~~~~~l~~~~~~---~~k~i~i~ 194 (413)
T PLN00175 122 SGCTEAIAATILGL--INPGDEVILFAPFYDSYEATLSMAGA-KIKTVTLRP-PDFAVPEDELKAAFTS---KTRAILIN 194 (413)
T ss_pred CCHHHHHHHHHHHh--CCCCCEEEEeCCCchhHHHHHHHcCC-EEEEEECCc-ccCCCCHHHHHHhcCc---CceEEEec
Confidence 99999999988876 68999999999999999999999999 999999853 3467899999888753 34556668
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|++|+++||+| ++|.++.++.
T Consensus 195 ~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~D--e~Y~~l~~~~ 236 (413)
T PLN00175 195 TPHNPTGKMFTREELELIASLCKENDVLAFTD--EVYDKLAFEG 236 (413)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEe--cccCccccCC
Confidence 99999998 6889999999999999 9999998763
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-27 Score=208.62 Aligned_cols=176 Identities=14% Similarity=0.054 Sum_probs=144.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCC-cCCC-ceEEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPP-LREG-RAFGVQ 82 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~-~~~~-~v~~~~ 82 (218)
.|..+|+|++|. +++++++.++++..+.+. ...+|.+..|.++||+++++++.. .++.. ++++ +| ++
T Consensus 27 ~~~~~i~l~~~~-----p~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~-~~g~~~~~~~~~i--~i 95 (396)
T PRK09147 27 ADLPPISLSIGE-----PKHPTPAFIKDALAANLD---GLASYPTTAGLPALREAIAAWLER-RYGLPALDPATQV--LP 95 (396)
T ss_pred cCCCeEecCCCC-----CCCCCCHHHHHHHHHHhh---hhcCCCCCCCCHHHHHHHHHHHHH-HhCCCcCCccceE--EE
Confidence 588999999995 234568889988877653 356799999999999999999965 54444 5554 55 59
Q ss_pred eccChhHHHHHHHHHHHhcC---CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEE
Q psy6266 83 TLSGTGALRVGAEFLHRILN---YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~---gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
|.|+++++.++++++ ++| ||+|++++|+|+.|..+++..|+ +++.+|+..++.+.+|++.+++.+.. +..+
T Consensus 96 t~G~~~al~~~~~~l--~~~~~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~vp~~~~~~~~~d~~~l~~~~~~---~~k~ 169 (396)
T PRK09147 96 VNGSREALFAFAQTV--IDRDGPGPLVVCPNPFYQIYEGAALLAGA-EPYFLNCDPANNFAPDFDAVPAEVWA---RTQL 169 (396)
T ss_pred CCChHHHHHHHHHHH--cCCCCCCCEEEEcCCCccchHHHHHhcCC-EEEEeccCccccCccCHHHHHHHHhh---ccEE
Confidence 999999999999877 678 99999999999999999999999 99999985444567899999877742 3444
Q ss_pred EEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 160 ILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 160 il~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++.++||||||. +|+++|++|+++||+| ++|..+.+++
T Consensus 170 i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D--e~y~~~~~~~ 215 (396)
T PRK09147 170 LFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASD--ECYSEIYFDE 215 (396)
T ss_pred EEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEee--ccccccccCC
Confidence 555799999997 7889999999999999 9999988764
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-27 Score=206.91 Aligned_cols=181 Identities=15% Similarity=0.140 Sum_probs=142.0
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t 83 (218)
.|..+++|+.|. +++ ++++.+.++..+.... ....+|.+..|.++||+++++++.. ..+..++++ +| ++|
T Consensus 31 ~~~~~~~l~~g~---p~~--~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lR~~ia~~l~~-~~~~~~~~~~~I--~it 101 (403)
T PRK08636 31 AGEDIIDFSMGN---PDG--PTPQHIIDKLCESAQK-PKTHGYSVSKGIYKLRLAICNWYKR-KYNVDLDPETEV--VAT 101 (403)
T ss_pred cCCCEEEcCCcC---CCC--CCCHHHHHHHHHHhcC-CccCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCeE--EEC
Confidence 467899999995 444 3466666665554432 2357899999999999999999965 444445665 55 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHH----hcCCCCcEE
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDL----VNAPDNSVI 159 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l----~~~~~~~~i 159 (218)
.|+++|+.++++++ ++|||+|++++|+|+.|..+++..|+ +++.+++...+.+++|++.+.+.+ ++..++..+
T Consensus 102 ~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~ 178 (403)
T PRK08636 102 MGSKEGYVHLVQAI--TNPGDVAIVPDPAYPIHSQAFILAGG-NVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKY 178 (403)
T ss_pred CChHHHHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHhcCC-EEEEEeccccccCccChhhhhhHHHHHHhhccCCceE
Confidence 99999999999987 68999999999999999999999999 999998732334688887654444 332345666
Q ss_pred EEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 160 ILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 160 il~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++.++||||||. +|.++|++|+++||+| ++|..+.++.
T Consensus 179 i~~~~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~D--e~Y~~l~~~~ 224 (403)
T PRK08636 179 VVVNFPHNPTTATVEKSFYERLVALAKKERFYIISD--IAYADITFDG 224 (403)
T ss_pred EEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEe--ccchhhccCC
Confidence 666789999997 7899999999999999 9999988763
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=204.67 Aligned_cols=180 Identities=18% Similarity=0.249 Sum_probs=142.6
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC---CceEEEEe
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE---GRAFGVQT 83 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~---~~v~~~~t 83 (218)
++.+|+++|.+.++.+ +.+.+.++++..+... ...++|++..|.++||+++++++.+ .+.. ..+ ++ +++|
T Consensus 3 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~Y~~~~G~~~lr~~ia~~~~~-~~~~-~~~~~~~~--I~it 75 (388)
T PRK08637 3 ATKYNATIGMATEKGG-PMYLSSLQDLLNDLTP--DEIFPYAPPQGIPELRDLWQEKMLR-ENPS-LSGKKMSL--PIVT 75 (388)
T ss_pred ccceecceeeEecCCC-cchHHHHHHHHHhhcc--ccccCCCCCCCCHHHHHHHHHHHhc-cCcc-ccccccce--eeEc
Confidence 4678999999966554 6778888887766432 3567899999999999999999876 5432 322 34 3699
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-HhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCCcEEEE
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDNSVIIL 161 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~iil 161 (218)
.|+++++.+++.++ ++|||+|++++|+|+.|...+. ..|+ +++.+|+.. +.+++|++.+++.++.. .+.+.+++
T Consensus 76 ~G~~~al~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~~g~-~vv~v~~~~-~~~~~d~~~l~~~~~~~~~~~~~~~~ 151 (388)
T PRK08637 76 NALTHGLSLVADLF--VDQGDTVLLPDHNWGNYKLTFNTRRGA-EIVTYPIFD-EDGGFDTDALKEALQAAYNKGKVIVI 151 (388)
T ss_pred cchHHHHHHHHHHh--cCCCCEEEEcCCCCccHHHHHHHhcCC-EEEEecccC-CCCcCCHHHHHHHHHhhccCCCEEEE
Confidence 99999999999887 6799999999999999998765 5798 899998842 34578999998888621 24456677
Q ss_pred cccCCCCcHH--------HHHHHhhc-----CeEEEeeCCceeeccCCCCC
Q psy6266 162 HACAHNPTAQ--------QVAHMVDK-----HHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 162 ~~~p~NPTG~--------~l~~l~~~-----~~i~ii~D~r~~y~~l~~~n 199 (218)
+++||||||. +|+++|++ |+++||+| ++|.++.|+.
T Consensus 152 ~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~D--e~Y~~l~~~~ 200 (388)
T PRK08637 152 LNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVD--DAYFGLFYED 200 (388)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEec--ccchhcccCC
Confidence 7899999997 67776653 89999999 9999998864
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=204.66 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=143.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~ 82 (218)
.+|.++|+|+.|. ++. ++++.++++..+.... ....+|.|..|.++||+++++++.. ..+..++++ +| ++
T Consensus 29 ~~~~~~i~l~~~~---p~~--~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~lr~aia~~~~~-~~g~~~~~~~~i--~i 99 (389)
T PRK08068 29 AEGHDVINLGQGN---PDQ--PTPEHIVEALQEAAEN-PANHKYSPFRGYPFLKEAAADFYKR-EYGVTLDPETEV--AI 99 (389)
T ss_pred hcCCCeEEecCCC---CCC--CCCHHHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCccE--EE
Confidence 4677899999995 343 5567788887776643 2356899999999999999999864 444445666 55 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++++.++++++ +.+||+|++++|+|+.|...++..|+ +++.+|+..++.+.+|++.+++.+.. +..+++.
T Consensus 100 t~G~~~~l~~~~~~~--~~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~i~~~~~~~~~~d~~~l~~~~~~---~~~~v~l 173 (389)
T PRK08068 100 LFGGKAGLVELPQCL--MNPGDTILVPDPGYPDYLSGVALARA-QFETMPLIAENNFLPDYTKIPEEVAE---KAKLMYL 173 (389)
T ss_pred cCCcHHHHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHhcCC-EEEEeecccccCCCCCHHHHHHhccc---cceEEEE
Confidence 999999999988876 67999999999999999999999999 99999984333566789999887742 3445555
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|.++|++++++||.| ++|..+.+++
T Consensus 174 ~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~D--eay~~~~~~~ 216 (389)
T PRK08068 174 NYPNNPTGAVATKAFFEETVAFAKKHNIGVVHD--FAYGAIGFDG 216 (389)
T ss_pred ECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEe--hhhhhhccCC
Confidence 689999997 7888999999999999 9999887763
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=206.56 Aligned_cols=173 Identities=15% Similarity=0.073 Sum_probs=142.4
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
|.-+|..+++|++|.+ ++.+++++ +|..++..+ ...+|++..|.++||+++++++.+ +++++| +
T Consensus 21 ~~~~~~~~~~~~~~e~-----~~~~~~~~-~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~------~~~~~v--i 84 (373)
T PRK07324 21 YDIAESCIDSLTLEEL-----LALAGKNP-EAFYQELGQ--KKLTYGWIEGSPEFKEAVASLYQN------VKPENI--L 84 (373)
T ss_pred cccccCCCCCCcHHHH-----HhccCcch-HHHHHHHhc--CCccCCCCCCCHHHHHHHHHHhcC------CChhhE--E
Confidence 4457889999999953 45677788 776666543 456899999999999999998854 455665 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
+|.|+++|+.++++++ ++|||+|+++.|+|+.|..+++..|+ +++.+++..++.+.+|++.+.+.+. +++.+++
T Consensus 85 ~t~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~~~~g~-~v~~v~~~~~~~~~~d~~~l~~~~~---~~~kli~ 158 (373)
T PRK07324 85 QTNGATGANFLVLYAL--VEPGDHVISVYPTYQQLYDIPESLGA-EVDYWQLKEENGWLPDLDELRRLVR---PNTKLIC 158 (373)
T ss_pred EcCChHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCC-EEEEEecccccCCCCCHHHHHHhCC---CCCcEEE
Confidence 9999999999999877 78999999999999999999999999 9999988543445678988877664 3445666
Q ss_pred cccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 162 HACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 162 ~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.++||||||. +|+++|++|+++||+| ++|.++.++
T Consensus 159 i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~D--e~y~~l~~~ 201 (373)
T PRK07324 159 INNANNPTGALMDRAYLEEIVEIARSVDAYVLSD--EVYRPLDED 201 (373)
T ss_pred EeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE--ccccccccC
Confidence 6899999996 6888999999999999 999998875
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=202.34 Aligned_cols=179 Identities=13% Similarity=0.095 Sum_probs=142.8
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
+|..+|+|++|. + .+.+++.+.++..+.+.. ...++|.+..|.++||+++++++.. ..+...++++. +++|.
T Consensus 27 ~~~~~~~l~~~~---~--~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~-~~~~~~~~~~~-vi~t~ 98 (383)
T TIGR03540 27 EGVDVISLGIGD---P--DLPTPKHIVEALCKAAEN-PENHRYPSYEGMLAYRQAVADWYKR-RFGVELDPETE-VLSLI 98 (383)
T ss_pred cCCCeEEeCCCC---C--CCCCCHHHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHHHHHHH-hhCCCCCCCCe-EEECC
Confidence 678999999995 2 345678888888776543 2357899999999999999999864 43333444421 35889
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ +++||+|++++|+|+.|..+++..|+ +++.+|+..++.+.+|++.+++.+.. +..+++.++
T Consensus 99 G~~~~l~~~~~~~--~~~gd~vlv~~P~y~~~~~~~~~~G~-~v~~v~~~~~~g~~~d~~~l~~~~~~---~~~~v~i~~ 172 (383)
T TIGR03540 99 GSKEGIAHIPLAF--VNPGDIVLVPDPGYPVYRIGTLFAGG-EPYEMPLKEENGFLPDFDAIPEDIAK---KAKLMFINY 172 (383)
T ss_pred CcHHHHHHHHHHh--CCCCCEEEEeCCCCcchHHHHHhcCC-EEEEEecCcccCCccCHHHHHhhccc---cceEEEEeC
Confidence 9999999998877 68999999999999999999999999 99999885333456689998887742 344555568
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. +|.++|++|+++||+| ++|.++.+++
T Consensus 173 P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D--e~y~~l~~~~ 213 (383)
T TIGR03540 173 PNNPTGAVAPLKFFKELVEFAKEYNIIVCHD--NAYSEITFDG 213 (383)
T ss_pred CCCCcCccCCHHHHHHHHHHHHHcCEEEEEe--cchhhhccCC
Confidence 9999997 7889999999999999 9999887653
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >KOG0259|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=196.27 Aligned_cols=187 Identities=15% Similarity=0.103 Sum_probs=160.5
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.++++|-|+.|.+ +.-+.+.+.+...+|...+++. +..+.|+|+.|++.-|+|+|+++.+ .-...++++.| ++|.
T Consensus 59 ~~k~iipl~~GDP-sv~~~~~ts~~a~~Av~~al~S-gk~N~Yaps~G~~~AR~AVAeYl~~-~l~~kl~a~DV--~lts 133 (447)
T KOG0259|consen 59 KKKPILPLGHGDP-SVYPCFRTSQEAEQAVVDALRS-GKGNGYAPSVGILPARRAVAEYLNR-DLPNKLTADDV--VLTS 133 (447)
T ss_pred cCceeccCCCCCC-CccccccCCHHHHHHHHHHHhc-CCCCCcCCccccHHHHHHHHHHhhc-CCCCccCcCce--EEec
Confidence 3458999999976 3467788888888998887765 5678999999999999999999765 43344677775 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|.++|+.+++.+| .+||..|++|.|+||-|....+..|+ +++.|.+..++++++|++.+++.+. +.++.+++++
T Consensus 134 GC~qAIe~~i~~L--A~p~aNILlPrPGfp~Y~~~a~~~~l-EVR~ydlLPe~~weIDL~~veal~D---ENT~AivviN 207 (447)
T KOG0259|consen 134 GCSQAIELAISSL--ANPGANILLPRPGFPLYDTRAIYSGL-EVRYYDLLPEKDWEIDLDGVEALAD---ENTVAIVVIN 207 (447)
T ss_pred cchHHHHHHHHHh--cCCCCceecCCCCCchHHHhhhhcCc-eeEeecccCcccceechHHHHHhhc---cCeeEEEEeC
Confidence 9999999999988 47999999999999999999999999 9999999888889999999988774 5677777789
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHH
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVA 204 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~ 204 (218)
||||+|. +|+++|++++|.||+| |+|.++.|++-..+.
T Consensus 208 P~NPcGnVys~~HL~kiae~A~klgi~vIaD--EVY~~~vfg~~pfvp 253 (447)
T KOG0259|consen 208 PNNPCGNVYSEDHLKKIAETAKKLGIMVIAD--EVYGHTVFGDKPFVP 253 (447)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhCCeEEeh--hhcceeecCCCCccc
Confidence 9999997 8999999999999999 999999998654443
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-26 Score=203.80 Aligned_cols=179 Identities=18% Similarity=0.141 Sum_probs=140.0
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
++|..+|+|+.|. +++ ++++.+.++..+.+.. ...+.|.+..|.++||+++++++.. ..+..+++++. +++|
T Consensus 32 ~~g~~~i~l~~g~---p~~--~~p~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~~~~~~~~~~-i~vt 103 (394)
T PRK05942 32 EQGLDLIDLGMGN---PDG--AAPQPVIEAAIAALAD-PQNHGYPPFEGTASFRQAITDWYHR-RYGVELDPDSE-ALPL 103 (394)
T ss_pred hcCCCeEEcCCCC---CCC--CCCHHHHHHHHHHHhC-CCCccCCCCCCCHHHHHHHHHHHHH-HHCCCcCCCCe-EEEc
Confidence 3688899999994 444 3455566554443332 2357899999999999999999964 43433556532 3589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.+++.++ ++|||+|++++|+|+.|...++..|+ +++.+++..++.+.+|++.+++.+. +++.+++.+
T Consensus 104 ~G~~~al~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~i~l~ 177 (394)
T PRK05942 104 LGSKEGLTHLALAY--VNPGDVVLVPSPAYPAHFRGPLIAGA-QIYPIILKPENDWLIDLSSIPEEVA---QQAKILYFN 177 (394)
T ss_pred cChHHHHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHHcCC-EEEEeecCCccCCccCHHHHHHhcc---ccceEEEEc
Confidence 99999999998876 68999999999999999998999999 8999987433446789999988774 344555556
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|++++++||+| ++|..+.++
T Consensus 178 ~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~D--e~y~~~~~~ 218 (394)
T PRK05942 178 YPSNPTTATAPREFFEEIVAFARKYEIMLVHD--LCYAELAFD 218 (394)
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEe--ccchhhccC
Confidence 89999997 6888999999999999 999988765
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-26 Score=203.96 Aligned_cols=177 Identities=12% Similarity=0.100 Sum_probs=142.0
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t 83 (218)
.|+.+|||++|. ++ +.+++.++++..+.... .....|. ..|.++||+++++++.. .++..+++ ++| ++|
T Consensus 30 ~~~~~i~l~~g~---p~--~~~~~~~~~~~~~~~~~-~~~~~y~-~~G~~~lr~aia~~~~~-~~g~~~~~~~~I--~it 99 (399)
T PRK07681 30 AGHKMIDLSIGN---PD--MPPADFVREEMVHTANQ-KESYGYT-LSGIQEFHEAVTEYYNN-THNVILNADKEV--LLL 99 (399)
T ss_pred cCCCeEEeCCCC---CC--CCCCHHHHHHHHHHHhc-cccCCCC-CCCcHHHHHHHHHHHHH-HhCCCCCCCCeE--EEC
Confidence 577899999995 22 45688899888876643 2234565 48999999999999965 54544666 565 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+|+..++.+.+|++.+.+.+. ++..+++.+
T Consensus 100 ~G~~~al~~~~~~~--~~~Gd~Vlv~~P~y~~~~~~~~~~G~-~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~v~l~ 173 (399)
T PRK07681 100 MGSQDGLVHLPMVY--ANPGDIILVPDPGYTAYETGIQMAGA-TSYYMPLKKENDFLPDLELIPEEIA---DKAKMMILN 173 (399)
T ss_pred CCcHHHHHHHHHHh--CCCCCEEEECCCCccchHHHHHhcCC-EEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEe
Confidence 99999999998877 68999999999999999999999999 9999998433345679999988774 234555567
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|+++|++++++||+| ++|.++.+++
T Consensus 174 ~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~D--e~y~~~~~~~ 215 (399)
T PRK07681 174 FPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHD--FAYAEFYFDG 215 (399)
T ss_pred CCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEe--ccchhheeCC
Confidence 89999997 6889999999999999 9999987753
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-26 Score=204.37 Aligned_cols=183 Identities=12% Similarity=0.103 Sum_probs=148.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCC------CCCcCCCc
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDA------SPPLREGR 77 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~------~~~~~~~~ 77 (218)
+.|.++|+|++|.+ +.+++..+++.++++..+.++. ....+|.+..|.++||+++++++.. .. +..+++++
T Consensus 30 ~~~~~~i~l~~g~p-~~~~~~~p~~~~~~a~~~~~~~-~~~~~Y~~~~G~~~Lr~aia~~~~~-~~~~~~~~~~~~~~~~ 106 (412)
T PTZ00433 30 PSPKSIIKLSVGDP-TLDGNLLTPAIQTKALVEAVDS-QECNGYPPTVGSPEAREAVATYWRN-SFVHKESLKSTIKKDN 106 (412)
T ss_pred CCCCCeeecCCcCC-CCcCCCCCCHHHHHHHHHHhhc-CCCCCCCCCCCcHHHHHHHHHHHHh-hccccccccCCCChhh
Confidence 57889999999964 2223456789999998876653 2356899999999999999999863 32 23356677
Q ss_pred eEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 78 AFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 78 v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
| ++|.|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++...+.+++|++.+++.+.. +.
T Consensus 107 i--~it~G~~~al~~~~~~~--~~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~i~~~~~~~~~~d~~~l~~~~~~---~~ 178 (412)
T PTZ00433 107 V--VLCSGVSHAILMALTAL--CDEGDNILVPAPGFPHYETVCKAYGI-EMRFYNCRPEKDWEADLDEIRRLVDD---RT 178 (412)
T ss_pred E--EEeCChHHHHHHHHHHh--cCCCCEEEEccCCcccHHHHHHHcCC-EEEEEecCccccCcCCHHHHHHHhcc---Cc
Confidence 6 59999999999999887 67999999999999999999999999 89999874334568899999877753 34
Q ss_pred EEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 158 VIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 158 ~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
.+++.++||||||. +|+++|++++++||+| ++|.++.+++
T Consensus 179 ~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~D--e~y~~~~~~~ 226 (412)
T PTZ00433 179 KALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISD--EIYAGMVFNG 226 (412)
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEe--ccccccccCC
Confidence 44556789999996 6788999999999999 9999998764
|
|
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-26 Score=201.33 Aligned_cols=175 Identities=16% Similarity=0.067 Sum_probs=141.8
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCC--cCCC-ceEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPP--LREG-RAFGV 81 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~--~~~~-~v~~~ 81 (218)
+|.++|+|++|. +++.+++.+++|.++... ....|.+..|.++||+++++++.+ .++.. ++++ +| +
T Consensus 26 ~~~~~i~l~~~~-----p~~~~~~~~~~a~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~-~~~~~~~~~~~~~i--~ 94 (393)
T TIGR03538 26 ASKPPIALSIGE-----PKHPTPAFVLEALRENLH---GLSTYPTTKGLPELRQAIARWLER-RFDLPTGVDPERHV--L 94 (393)
T ss_pred cCCCeEEecCCC-----CCCCCCHHHHHHHHHHhh---ccCCCCCCCCCHHHHHHHHHHHHH-hhCCcccCCCCceE--E
Confidence 578999999995 234568889998877653 356799999999999999999965 53332 4554 44 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCe--EEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTT--FYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~--V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
+|.|+++++.++++++ ++|||+ |++++|+|+.|..+++..|+ +++.+++..++.+.+|++.+++.+.+ ++.+
T Consensus 95 it~Ga~~al~~~~~~l--~~~gd~~~vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~~---~~k~ 168 (393)
T TIGR03538 95 PVNGTREALFAFAQAV--INPGQAPLVVMPNPFYQIYEGAALLAGA-EPYFLNCTAENGFLPDFDAVPESVWR---RCQL 168 (393)
T ss_pred ECCCcHHHHHHHHHHH--cCCCCcceEEecCCCCcchHHHHHhcCC-eEEEeeccccCCCCCCHHHHHHHHhh---cceE
Confidence 9999999999999877 689986 99999999999999999999 99999884343466789999887753 3344
Q ss_pred EEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 160 ILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 160 il~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++.++||||||. +|+++|++|+++||+| ++|..+.++
T Consensus 169 i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~D--e~Y~~~~~~ 213 (393)
T TIGR03538 169 LFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASD--ECYSELYFD 213 (393)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEC--cchhhcccC
Confidence 444799999997 7889999999999999 999998775
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=210.00 Aligned_cols=177 Identities=12% Similarity=0.039 Sum_probs=139.6
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC-CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD-SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.+|||+.|. ..++ .+.+++|.+.+.+.. ....+|+++.|.++||+++++++.+ +++..+++++| ++|.|+
T Consensus 130 ~~i~~~~~~-----~~fp-~~~i~~a~~~l~~~~~~~~~~Y~~s~G~~~lReaIA~~~~~-r~g~~~~pe~I--~iT~Ga 200 (534)
T PLN02231 130 SLLDKSETH-----GLFS-ADAIERAWQILDQIPGRATGAYSHSQGIKGLRDAIAAGIEA-RDGFPADPNDI--FLTDGA 200 (534)
T ss_pred ccCCCCCcc-----ccCC-HHHHHHHHHHHHhcCCccccCcCCCCCcHHHHHHHHHHHHh-ccCCCCCcccE--EEeCCH
Confidence 567777652 2232 355566554333221 2356799999999999999999977 66666777876 599999
Q ss_pred hhHHHHHHHHHHHh-cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC---CCcEEEEc
Q psy6266 87 TGALRVGAEFLHRI-LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP---DNSVIILH 162 (218)
Q Consensus 87 ~~al~~~~~~l~~l-~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~~~iil~ 162 (218)
++|+.++++++ + .+||+|+++.|+|+.|...++..|+ +++.+++..++.+++|++.+++.+++.. .+..+++.
T Consensus 201 ~~ai~~~~~~l--~~~~gd~Vli~~P~Y~~y~~~~~~~g~-~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl 277 (534)
T PLN02231 201 SPAVHMMMQLL--IRSEKDGILCPIPQYPLYSASIALHGG-TLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVV 277 (534)
T ss_pred HHHHHHHHHHh--ccCCCCEEEEeCCCChhHHHHHHHcCC-EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEE
Confidence 99999999887 4 4799999999999999999999999 8999988544457899999999886531 13445555
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++||||||. +|+++|++++++||+| |+|.++.|+
T Consensus 278 ~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~D--EvY~~l~y~ 319 (534)
T PLN02231 278 INPGNPTGQVLAEENQRDIVEFCKQEGLVLLAD--EVYQENVYV 319 (534)
T ss_pred eCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE--ccchhcccC
Confidence 789999998 7899999999999999 999999884
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-26 Score=200.44 Aligned_cols=178 Identities=12% Similarity=0.072 Sum_probs=141.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|+|+.|. +++.+++.++++..+.... ....+|.+..|.++||+++++++.+ ..+..+++++. +++|.
T Consensus 29 ~~~~~i~l~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~g~~~~~~~~-ii~t~ 100 (385)
T PRK09276 29 RGVDVISLGIGD-----PDLPTPDHIIEAMCKAVED-PENHQYPSYEGMLEFRKAVADWYKR-RFGVELDPETE-VISLI 100 (385)
T ss_pred cCCCEEEecCCC-----CCCCCCHHHHHHHHHHHhC-CCCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCCCCc-EEEcc
Confidence 467899999994 2346678889888877643 2356899999999999999999964 43433555532 35789
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++..++.+.+|++.+++.+. +++.+++.++
T Consensus 101 G~~~~i~~~~~~~--~~~gd~Vl~~~P~y~~~~~~~~~~g~-~~~~v~~~~~~g~~~d~~~l~~~~~---~~~~~v~l~~ 174 (385)
T PRK09276 101 GSKEGIAHIPLAF--VNPGDVVLVPDPGYPVYKIGTIFAGG-EPYFMPLKEENGFLPDLDAIPEDVA---KKAKLMFINY 174 (385)
T ss_pred CcHHHHHHHHHHh--CCCCCEEEEcCCCCcChHHHHHHcCC-EEEEEecCCCCCCcCCHHHHHHhcc---ccceEEEEeC
Confidence 9999999998877 68999999999999999999999999 9999988433345678888877664 2344555568
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|+++|++|+++||.| ++|.++.++
T Consensus 175 p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~D--e~y~~~~~~ 214 (385)
T PRK09276 175 PNNPTGAVADLEFFEEVVDFAKKYDIIVCHD--AAYSEIAYD 214 (385)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCcEEEEe--cchhheecC
Confidence 9999997 6888899999999999 999988765
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=202.40 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=140.5
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCC-cCCC-ceEEEEe
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPP-LREG-RAFGVQT 83 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~-~~~~-~v~~~~t 83 (218)
|..+|||++|. +++.+++.+++++.+.+.. .....|.+ .|.++||+++++++.. ..+.. ++++ +| ++|
T Consensus 43 ~~~~i~L~~g~-----p~~~~~~~~~~~l~~~~~~-~~~~~Y~~-~G~~~lr~aia~~~~~-~~g~~~~~~~~~I--~it 112 (410)
T PRK06290 43 DMELIDMGVGE-----PDEMADESVVEVLCEEAKK-PENRGYAD-NGIQEFKEAAARYMEK-VFGVKDIDPVTEV--IHS 112 (410)
T ss_pred CCCeEEcCCCC-----CCCCCCHHHHHHHHHHHhC-CCCCCCCC-CCcHHHHHHHHHHHHH-HcCCCcCCCcceE--EEc
Confidence 66799999995 2345677888887765533 23456875 8999999999999965 44444 5554 55 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ +++||+|++++|+|+.|...++..|+ +++.+++..+..+.+|++.+++.+.. +..+++.+
T Consensus 113 ~Gs~~al~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~~~~g~-~v~~v~~~~~~~~~~d~~~l~~~~~~---~~k~i~l~ 186 (410)
T PRK06290 113 IGSKPALAMLPSCF--INPGDVTLMTVPGYPVTGTHTKYYGG-EVYNLPLLEENNFLPDLDSIPKDIKE---KAKLLYLN 186 (410)
T ss_pred cCHHHHHHHHHHHh--CCCCCEEEEeCCCCccHHHHHHHcCC-EEEEEecCCCcCCcCCHHHHHHhhcc---cceEEEEE
Confidence 99999999999877 68999999999999999999999999 99999985433456689888887743 34455556
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|++|+++||+| ++|.++.+++
T Consensus 187 nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~D--EaY~~~~~~~ 228 (410)
T PRK06290 187 YPNNPTGAVATKEFYEEVVDFAKENNIIVVQD--AAYAALTFDG 228 (410)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEe--cchhhceeCC
Confidence 89999998 7888999999999999 9999987753
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=200.63 Aligned_cols=176 Identities=15% Similarity=0.077 Sum_probs=144.2
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|+|+.|.+ .+++++.++++..+.+.. ...+|.+..|.++||+++++++.. ..+..+++++| ++|.
T Consensus 30 ~~~~~i~l~~g~~-----~~~~~~~v~~a~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~i--~it~ 99 (387)
T PRK08960 30 AGHDVIHLEIGEP-----DFTTAEPIVAAGQAALAA--GHTRYTAARGLPALREAIAGFYAQ-RYGVDVDPERI--LVTP 99 (387)
T ss_pred cCCCeEEeCCCCC-----CCCCCHHHHHHHHHHHhc--CCCccCCCCCCHHHHHHHHHHHHH-HhCCCCChhhE--EEcc
Confidence 4678999999952 345689999998877753 345799999999999999999854 44444667776 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ ++|||+|++++|+|+.|...++..|. +++.+++..+..+.+|++.+++.+. +++.+++.++
T Consensus 100 G~~~al~~~~~~~--~~~gd~vlv~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~i~~ 173 (387)
T PRK08960 100 GGSGALLLASSLL--VDPGKHWLLADPGYPCNRHFLRLVEG-AAQLVPVGPDSRYQLTPALVERHWN---ADTVGALVAS 173 (387)
T ss_pred CcHHHHHHHHHHh--cCCCCEEEEcCCCCcchHHHHHhcCC-eEEEEecCcccCCCCCHHHHHHHhC---ccceEEEEEC
Confidence 9999999999877 68999999999999999999999999 8999987433345688999888775 3345555678
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|+++|++|++++|.| ++|.++.++
T Consensus 174 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~D--e~Y~~~~~~ 213 (387)
T PRK08960 174 PANPTGTLLSRDELAALSQALRARGGHLVVD--EIYHGLTYG 213 (387)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCEEEEE--ccccccccC
Confidence 9999998 6888899999999999 999998775
|
|
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=201.29 Aligned_cols=181 Identities=12% Similarity=0.097 Sum_probs=147.9
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|.++|+|++|.+ +..+++++++.++++..+.+.+ .....|.|..|.++||+++++++.. .+. .+.+++| ++|.
T Consensus 29 ~~~~~i~l~~g~p-~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~lr~aia~~~~~-~~~-~~~~~~i--~~t~ 102 (401)
T TIGR01264 29 PEKPMIKLSIGDP-TVFGNLPTDPEVMQAMKDSLDS-GKYNGYAPTVGALSAREAIASYYHN-PDG-PIEADDV--VLCS 102 (401)
T ss_pred cCCCeeecCCCCC-CCcCCCCCCHHHHHHHHHHHhc-cCCCCCCCCCCCHHHHHHHHHHHhh-cCC-CCCHHHE--EECc
Confidence 3678899999975 2234567789999988877654 2345799999999999999999975 544 3667775 5899
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ +++||+|++++|+|+.|..+++..|+ +++.+++...+.+++|++.+++.+.. ++.+++.++
T Consensus 103 G~~~al~~~~~~l--~~~gd~v~i~~P~y~~~~~~~~~~g~-~v~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~~~~ 176 (401)
T TIGR01264 103 GCSHAIEMCIAAL--ANAGQNILVPRPGFPLYETLAESMGI-EVKLYNLLPDKSWEIDLKQLESLIDE---KTAALIVNN 176 (401)
T ss_pred ChHHHHHHHHHHh--CCCCCEEEEeCCCChhHHHHHHHcCC-EEEEeecCCccCCCCCHHHHHHHhcc---CceEEEEcC
Confidence 9999999999887 67999999999999999999999999 89898875444568899999887753 234455578
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. +|+++|++++++||+| ++|.+|.+++
T Consensus 177 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~D--e~y~~~~~~~ 217 (401)
T TIGR01264 177 PSNPCGSVFSRQHLEEILAVAERQCLPIIAD--EIYGDMVFSG 217 (401)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE--hhhhhhccCC
Confidence 9999996 6888999999999999 9999998764
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.2e-26 Score=200.98 Aligned_cols=177 Identities=11% Similarity=0.034 Sum_probs=140.8
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t~G 85 (218)
.++|||++|.+ +. ..+++.++++..+.+.. ....+|.+..|.++||+++++++.+ ..+..+++ ++| ++|.|
T Consensus 39 ~~~i~l~~g~~---~~-~~p~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~LR~aia~~l~~-~~g~~~~~~~~I--~it~G 110 (405)
T PRK06207 39 GRPVDFSHGDV---DA-HEPTPGAFELFSAGVER-GGVQAYTEYRGDADIRELLAARLAA-FTGAPVDAADEL--IITPG 110 (405)
T ss_pred CCceecCCcCC---CC-CCCCHHHHHHHHHHHhc-CCCccCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCCE--EEeCC
Confidence 36789999963 42 34567777776666543 2356799999999999999999854 43433555 665 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccC---CcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN---PEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~---~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
+++++.++++++ ++|||+|++++|+|+.|..+++..|+ +++.+++.. .+.+++|++.+++.+.+ +..+++.
T Consensus 111 a~~al~~~~~~l--~~~Gd~Vlv~~P~y~~~~~~~~~~g~-~v~~v~~~~~~~~~~~~~d~~~l~~~~~~---~~k~v~l 184 (405)
T PRK06207 111 TQGALFLAVAAT--VARGDKVAIVQPDYFANRKLVEFFEG-EMVPVQLDYLSADKRAGLDLDQLEEAFKA---GVRVFLF 184 (405)
T ss_pred cHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHHcCC-EEEEEeccccCcccCCCcCHHHHHHhhhh---cCeEEEE
Confidence 999999999877 68999999999999999999999999 898888631 22467899999888753 3445556
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|.++|++|+++||+| ++|..+.++.
T Consensus 185 ~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~D--e~Y~~~~~~~ 227 (405)
T PRK06207 185 SNPNNPAGVVYSAEEIAQIAALARRYGATVIVD--QLYSRLLYDG 227 (405)
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccccccCC
Confidence 789999998 6888999999999999 9999988753
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-26 Score=199.09 Aligned_cols=176 Identities=8% Similarity=0.032 Sum_probs=139.6
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
+..+|||++|. ++ +++++.+.++..+.... ...+|.+..|.++||+++++++.+ ..+..+++++| ++|.|
T Consensus 28 ~~~~i~l~~g~---p~--~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~-~~~~~~~~~~i--~it~G 97 (384)
T PRK06348 28 FPDIIDLSLGD---PD--LITDESIINAAFEDAKK--GHTRYTDSGGDVELIEEIIKYYSK-NYDLSFKRNEI--MATVG 97 (384)
T ss_pred cCCcEEcCCCC---CC--CCCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCChhhE--EEcCC
Confidence 35689999995 23 45566666654433322 356799999999999999999965 54444677776 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++...+.+.+|++.+++.++. +..+++.++|
T Consensus 98 ~~~al~~~~~~~--~~~gd~vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~p 171 (384)
T PRK06348 98 ACHGMYLALQSI--LDPGDEVIIHEPYFTPYKDQIEMVGG-KPIILETYEEDGFQINVKKLEALITS---KTKAIILNSP 171 (384)
T ss_pred hHHHHHHHHHHh--cCCCCEEEEeCCCCcchHHHHHHcCC-EEEEecCCcCcCCcCCHHHHHHhhCc---CccEEEEeCC
Confidence 999999999887 68999999999999999999999999 88888875444567899999887753 3333444689
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
|||||. +|.++|++++++||+| ++|.++.++.
T Consensus 172 ~NPtG~~~s~~~~~~l~~~a~~~~~~ii~D--e~y~~~~~~~ 211 (384)
T PRK06348 172 NNPTGAVFSKETLEEIAKIAIEYDLFIISD--EVYDGFSFYE 211 (384)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCeEEEEe--cccccceeCC
Confidence 999997 6888999999999999 9999998763
|
|
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=197.36 Aligned_cols=178 Identities=15% Similarity=0.059 Sum_probs=144.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
+.|.++|+|+.|. +++++++.+.++..+.... ....|.+..|.++||+++++++.. ..+..+++++| ++|
T Consensus 27 ~~~~~~i~l~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~~i--~~t 96 (388)
T PRK07337 27 RAGRDIIHMGIGE-----PDFTAPEPVVEAAARALRR--GVTQYTSALGLAPLREAIAAWYAR-RFGLDVAPERI--VVT 96 (388)
T ss_pred hcCCCEEEeCCcC-----CCCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCChHhE--EEe
Confidence 3577899999995 2345678888887776643 356799999999999999999854 44444667775 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.+++.++ +++||+|++++|+|+++...++..|+ +++.+++..++.+.+|++.+++.+. +++.+++.+
T Consensus 97 ~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~ 170 (388)
T PRK07337 97 AGASAALLLACLAL--VERGDEVLMPDPSYPCNRHFVAAAEG-RPVLVPSGPAERFQLTAADVEAAWG---ERTRGVLLA 170 (388)
T ss_pred cCcHHHHHHHHHHh--cCCCCEEEEeCCCchhhHHHHHHcCC-EEEEeecCCccCCcCCHHHHHhhcC---ccceEEEEE
Confidence 99999999998877 68999999999999999999999999 8999988433456789999888774 344555558
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|+++++++|.| ++|.++.++.
T Consensus 171 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~~ 212 (388)
T PRK07337 171 SPSNPTGTSIAPDELRRIVEAVRARGGFTIVD--EIYQGLSYDA 212 (388)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEe--ccccccccCC
Confidence 89999997 6888899999999999 9999887753
|
|
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-25 Score=198.40 Aligned_cols=179 Identities=16% Similarity=0.150 Sum_probs=138.5
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~ 81 (218)
...|..+|+|+.|. + ++++++.+.++..+.... ....+|.+..|.++||+++++++.. ..+..++++ +| +
T Consensus 26 ~~~~~~~i~l~~~~---p--~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~g~~~~~~~~I--~ 96 (405)
T PRK09148 26 RAAGADIIDLGMGN---P--DLPTPQHIVDKLCETAQD-PRTHRYSASKGIPGLRRAQAAYYAR-RFGVKLNPDTQV--V 96 (405)
T ss_pred HhcCCCeEEcCCCC---C--CCCCCHHHHHHHHHHHcC-cccCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCcE--E
Confidence 34688999999995 2 345577888877766533 2357899999999999999999853 333335555 55 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
+|.|+++++.++++++ +++||+|++++|+|+.|...++..|+ +++.+++..+..+ ...+.+.++...+++.+++
T Consensus 97 it~G~~~al~~~~~~l--~~~gd~Vl~~~P~y~~~~~~~~~~g~-~v~~v~~~~~~~~---~~~l~~~~~~~~~~~~~v~ 170 (405)
T PRK09148 97 ATLGSKEGFANMAQAI--TAPGDVILCPNPSYPIHAFGFIMAGG-VIRSVPAEPDEEF---FPALERAVRHSIPKPIALI 170 (405)
T ss_pred EcCChHHHHHHHHHHh--cCCCCEEEEcCCCCcccHHHHHhcCC-EEEEEeCCCCCCC---ccCHHHHHhhccccceEEE
Confidence 9999999999999887 68999999999999999999999999 8999987432222 2334444443334556666
Q ss_pred cccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 162 HACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 162 ~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.++||||||. +|.++|++|+++||+| ++|.++.++
T Consensus 171 l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~D--e~Y~~~~~~ 213 (405)
T PRK09148 171 VNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSD--LAYSEIYFD 213 (405)
T ss_pred EeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEe--ccchhhhcC
Confidence 6789999997 6889999999999999 999998775
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-25 Score=193.02 Aligned_cols=173 Identities=15% Similarity=0.080 Sum_probs=137.4
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G 85 (218)
..+|||+.|.+ +. +.++.+.++..+.+.+ ...+|.+..|.++||+++++++.. ..+...+++ +| ++|.|
T Consensus 26 ~~~i~l~~g~p---~~--~~p~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~-~~g~~~~~~~~i--~~t~G 95 (387)
T PRK08912 26 HGAINLGQGFP---DD--PGPEDVRRAAADALLD--GSNQYPPMMGLPELRQAVAAHYAR-FQGLDLDPETEV--MVTSG 95 (387)
T ss_pred CCeEEccCCCC---CC--CCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCCcccE--EEeCC
Confidence 57899999973 33 3355666665555533 356799999999999999999864 444445665 55 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.+++.++ ++|||+|++++|+|++|..+++..|+ +++.+++. .+.+++|++.+++.+.. +..+++.++|
T Consensus 96 ~~~al~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~l~~~~~~---~~~~v~l~~p 168 (387)
T PRK08912 96 ATEALAAALLAL--VEPGDEVVLFQPLYDAYLPLIRRAGG-VPRLVRLE-PPHWRLPRAALAAAFSP---RTKAVLLNNP 168 (387)
T ss_pred cHHHHHHHHHHh--cCCCCEEEEeCCCchhhHHHHHHcCC-EEEEEecC-cccCcCCHHHHHHHhCc---cceEEEEeCC
Confidence 999999888876 67999999999999999999999999 89999873 33567899999887743 3344445689
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|++|+++||.| ++|..+.++
T Consensus 169 ~NPtG~~~s~~~~~~i~~~~~~~~~~ii~D--e~y~~~~~~ 207 (387)
T PRK08912 169 LNPAGKVFPREELALLAEFCQRHDAVAICD--EVWEHVVFD 207 (387)
T ss_pred CCCcCcccCHHHHHHHHHHHHHCCeEEEEh--hhhhhcccC
Confidence 999997 5889999999999999 999988775
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-25 Score=194.02 Aligned_cols=181 Identities=14% Similarity=0.048 Sum_probs=144.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|.++|+|+.|.+.. .++.+++.++++..+++.. ....|.+..|.++||+++++++.. .++..+++++| ++|
T Consensus 27 ~~~~~~i~l~~g~p~~--~~~~p~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~i--~it 99 (398)
T PRK08363 27 KKGIKVIRLNIGDPVK--FDFQPPEHMKEAYCRAIKE--GHNYYGPSEGLPELREAIVKREKR-KNGVDITPDDV--RVT 99 (398)
T ss_pred hcCCCeEEEeCCCCCc--CCCCCCHHHHHHHHHHHHc--CCCCCCCCCCcHHHHHHHHHHHHH-hcCCCCChhhE--EEe
Confidence 3678999999996421 1345688899988877643 345799999999999999999865 55544677775 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ +++||+|++++|+|+.|...++..|+ +++.++...++.+.+|++.+++.+.. ++.+++.+
T Consensus 100 ~G~~~al~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~v~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~ 173 (398)
T PRK08363 100 AAVTEALQLIFGAL--LDPGDEILIPGPSYPPYTGLVKFYGG-VPVEYRTIEEEGWQPDIDDIRKKITE---KTKAIAVI 173 (398)
T ss_pred CCHHHHHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHHcCC-EEEEeccccccCCcCCHHHHHhhCCc---ceEEEEEE
Confidence 99999999999877 68999999999999999999999998 88887432344456788888877742 34445557
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|+++++++|.| ++|.++.++.
T Consensus 174 ~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~D--eay~~~~~~~ 215 (398)
T PRK08363 174 NPNNPTGALYEKKTLKEILDIAGEHDLPVISD--EIYDLMTYEG 215 (398)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEh--hhhhhhccCC
Confidence 99999996 6888899999999999 9999887753
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-25 Score=196.48 Aligned_cols=171 Identities=9% Similarity=-0.017 Sum_probs=131.1
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC---CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD---SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
|..+|+|++|. .++.+++.+.++..+.+.+. ....+|.|..|.++||+++++++++ ..+..+++++| ++
T Consensus 33 ~~~~i~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~-~~g~~~~~~~I--~i 104 (409)
T PRK07590 33 EAKIIRLGIGD-----VTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQ-ARGCDISADEI--FI 104 (409)
T ss_pred CCceEEecCcC-----CCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHH-hcCCcCChhhE--EE
Confidence 67899999995 33466788888877766431 1346899999999999999999865 55555777876 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCc-----------ceeEeccCCcCccccHHHHHHHHh
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTE-----------AREYRYWNPEKRAVDFTGMYEDLV 151 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~-----------~~~~~~~~~~~~~~d~~~~~~~l~ 151 (218)
|.|+++++.++.. + ++|||+|++++|+|+.|..+++..|. + ++.+++..++.+.+|+ .
T Consensus 105 t~Ga~~al~~l~~-~--~~~gd~V~v~~P~Y~~~~~~~~~~g~-~~~~~~~~~~~~~~~v~~~~~~~~~~d~-------~ 173 (409)
T PRK07590 105 SDGAKCDTGNILD-I--FGPDNTIAVTDPVYPVYVDTNVMAGR-TGEANEDGRYSGIVYLPCTAENNFVPEL-------P 173 (409)
T ss_pred CCCHHHHHHHHHH-h--cCCCCEEEEeCCCCcchHHHHHHcCC-cccccccccccceeEeecccccCCcccC-------c
Confidence 9999999998643 3 57999999999999999999999998 6 7777763222222232 1
Q ss_pred cCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+ ++..+++.++||||||. +|+++|++|+++||+| ++|.++.++.
T Consensus 174 ~--~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~D--e~Y~~~~~~~ 225 (409)
T PRK07590 174 E--EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFD--AAYEAFISDP 225 (409)
T ss_pred c--cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEE--ccchhhccCC
Confidence 1 23344444699999997 7889999999999999 9999987753
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.4e-25 Score=191.78 Aligned_cols=175 Identities=17% Similarity=0.086 Sum_probs=139.9
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G 85 (218)
..+|+|+.|.+ ++.+++.++++..+...+ ...+|.+..|.++||+++++++.. ..+..++++ +| ++|.|
T Consensus 20 ~~~i~l~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~~i--~~t~G 89 (378)
T PRK07682 20 EGVISLGVGEP-----DFVTPWNVREASIRSLEQ--GYTSYTANAGLLELRQEIAKYLKK-RFAVSYDPNDEI--IVTVG 89 (378)
T ss_pred CCeEEeCCCCC-----CCCCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCCCCcE--EEeCC
Confidence 36899999963 234577788887766643 356799999999999999999965 434335554 55 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.++....+.+++|++.+++.+.. +..+++.++|
T Consensus 90 ~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~~~~p 163 (378)
T PRK07682 90 ASQALDVAMRAI--INPGDEVLIVEPSFVSYAPLVTLAGG-VPVPVATTLENEFKVQPAQIEAAITA---KTKAILLCSP 163 (378)
T ss_pred hHHHHHHHHHHh--CCCCCEEEEeCCCchhhHHHHHHcCC-EEEEeecCCccCCCCCHHHHHhhcCc---ccEEEEEECC
Confidence 999999998877 68999999999999999999999999 88888863233567899999887743 3444545689
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
|||||. +|+++|++|++++|+| ++|.++.++.
T Consensus 164 ~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D--e~y~~~~~~~ 203 (378)
T PRK07682 164 NNPTGAVLNKSELEEIAVIVEKHDLIVLSD--EIYAELTYDE 203 (378)
T ss_pred CCCcCcCcCHHHHHHHHHHHHHcCcEEEEe--hhhhhcccCC
Confidence 999997 6889999999999999 9999998763
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=192.50 Aligned_cols=174 Identities=13% Similarity=0.147 Sum_probs=140.1
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t~G 85 (218)
.++|+|+.|.+ .+++++.+.++..++..+ ...+|.|..|.++||+++++++.. ..+...++ ++| ++|.|
T Consensus 29 ~~~i~l~~g~p-----~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~-~~g~~~~~~~~i--~it~g 98 (384)
T PRK12414 29 HDALNLSQGAP-----NFAPDPALVEGVARAMRD--GHNQYAPMAGIAALREALAEKTER-LYGARYDPASEV--TVIAS 98 (384)
T ss_pred CCeEEcCCCCC-----CCCCCHHHHHHHHHHHHh--CCCCcCCCCCcHHHHHHHHHHHHH-HhCCCCCCCCcE--EEECC
Confidence 46899999952 345688889888776643 356799999999999999998744 33332333 455 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.++++++ ++|||+|++++|+|+.|..+++..|+ +++.++.. .+.+.+|++.+++.+. ++..+++.++|
T Consensus 99 ~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~i~~p 171 (384)
T PRK12414 99 ASEGLYAAISAL--VHPGDEVIYFEPSFDSYAPIVRLQGA-TPVAIKLS-PEDFRVNWDEVAAAIT---PRTRMIIVNTP 171 (384)
T ss_pred hHHHHHHHHHHh--cCCCCEEEEeCCCccchHHHHHHcCC-EEEEEecC-ccccccCHHHHHhhcC---cccEEEEEcCC
Confidence 999999998877 68999999999999999999999999 89999873 3456789999988775 23445555789
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
|||||. +|.++|++|++++|.| ++|..+.|++
T Consensus 172 ~NPTG~~~s~~~~~~i~~~a~~~~~~ii~D--e~Y~~~~~~~ 211 (384)
T PRK12414 172 HNPSATVFSAADLARLAQLTRNTDIVILSD--EVYEHVVFDG 211 (384)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHCCeEEEEh--hhhhhccCCC
Confidence 999997 6788899999999999 9999988764
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-25 Score=200.85 Aligned_cols=171 Identities=8% Similarity=-0.021 Sum_probs=128.6
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCC-CCCc-C--CCceEEEEe
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDA-SPPL-R--EGRAFGVQT 83 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~-~~~~-~--~~~v~~~~t 83 (218)
++|||++|. +++++++.|.++...+. + . .|+++.|+++||+++++++.. +. .... . +++| ++|
T Consensus 101 ~~i~l~~g~-----p~~~~~~~v~e~~~~~~---~-~-~Y~~~~g~~~lreaia~~~~~-~~~~~~~~~~~~~~I--~vT 167 (527)
T PRK09275 101 DAVSYVRDQ-----LGFDADEFVYELVDGII---G-D-NYPVPDRMLKHTEKIVKDYLR-QEMCGGRPPKGEFDL--FAV 167 (527)
T ss_pred HHHhhcCCC-----CCCCCCHHHHHHHHHHh---c-C-CCCCCCCCHHHHHHHHHHHHH-hhccCCCCCCCcCeE--EEe
Confidence 679999995 34677999999665553 2 2 499999999999999996643 31 1111 2 2344 699
Q ss_pred ccChhHHHHHHHHHH---HhcCCCeEEecCCCchhHHHHHHHhCCCcceeEec--cCCcCccccHHHHHHHHhcCCCCcE
Q psy6266 84 LSGTGALRVGAEFLH---RILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRY--WNPEKRAVDFTGMYEDLVNAPDNSV 158 (218)
Q Consensus 84 ~G~~~al~~~~~~l~---~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~--~~~~~~~~d~~~~~~~l~~~~~~~~ 158 (218)
.|+++|+..+++++. .++|||+|++++|+|+.|..++++.|+ .++.+++ ..++.+.+|.+.+++.+. ++++
T Consensus 168 ~Ga~~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~Y~~~~~l~g~-~~~~v~v~~~~~~~f~~d~~~l~~~~~---~~tk 243 (527)
T PRK09275 168 EGGTAAMCYIFDSLKENGLLKAGDKIALMTPIFTPYLEIPELPRY-DLEVVHINADEENEWQYPDSELEKLRD---PSIK 243 (527)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCCCEEEEeCCChHHHHHHHHHcCC-CeEEEEeecCcccCCCCCHHHHHhhcC---CCCC
Confidence 999999999888642 278999999999999999999988865 5544444 223446778888877553 4455
Q ss_pred EEEcccCCCCcHH--------HHHHHhhc--CeEEEeeCCceeeccCCC
Q psy6266 159 IILHACAHNPTAQ--------QVAHMVDK--HHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 159 iil~~~p~NPTG~--------~l~~l~~~--~~i~ii~D~r~~y~~l~~ 197 (218)
+++.++||||||. +|+++|++ ++++||+| ++|..+.+
T Consensus 244 ai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~D--EvY~~f~~ 290 (527)
T PRK09275 244 ALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITD--DVYGTFVD 290 (527)
T ss_pred EEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEEC--CCChhhcc
Confidence 5555789999997 68888854 59999999 99999875
|
|
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-24 Score=193.12 Aligned_cols=177 Identities=11% Similarity=0.026 Sum_probs=141.0
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||++|.+ .+++++.++++..++... ...+|.+..|.++||+++++++.. ..+..+.+++| ++|.
T Consensus 31 ~~~~~i~l~~g~p-----~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~l~~-~~g~~~~~~~i--~~t~ 100 (402)
T PRK06107 31 AGRSIVDLTVGEP-----DFDTPDHIKQAAVAAIER--GETKYTLVNGTPALRKAIIAKLER-RNGLHYADNEI--TVGG 100 (402)
T ss_pred ccCCEEEcCCCCC-----CCCCCHHHHHHHHHHHHc--CCCCCCCCCCCHHHHHHHHHHHHH-hcCCCCChhhE--EEeC
Confidence 4678899999962 345578888888887753 346799999999999999999854 44444566765 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ +++||+|++++|+|+.|...+...++ .++.+++..++.+.+|++.+++.+. ++..+++.++
T Consensus 101 G~~~al~~~~~~~--~~~gd~vl~~~p~y~~y~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~ 174 (402)
T PRK06107 101 GAKQAIFLALMAT--LEAGDEVIIPAPYWVSYPDMVLANDG-TPVIVACPEEQGFKLTPEALEAAIT---PRTRWLILNA 174 (402)
T ss_pred CHHHHHHHHHHHh--cCCCCEEEEecCCCcCHHHHHHHcCC-EEEEecCCcccCCCCCHHHHHhhcC---cCceEEEEEC
Confidence 9999999998766 68999999999999999999999998 8888876323345678888888774 3344445568
Q ss_pred CCCCcHH--------HHHHHhhcC-eEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKH-HVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~-~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. +++++|++| ++++|+| ++|..+.|++
T Consensus 175 p~NPtG~~~s~~~~~~l~~~a~~~~~~~iI~D--e~y~~l~~~~ 216 (402)
T PRK06107 175 PSNPTGAVYSRAELRALADVLLRHPHVLVLTD--DIYDHIRFDD 216 (402)
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHcCCeEEEEe--hhccccccCC
Confidence 9999996 688889997 9999999 9999887753
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-24 Score=189.26 Aligned_cols=172 Identities=14% Similarity=0.100 Sum_probs=138.9
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEeccCh
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLSGT 87 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G~~ 87 (218)
+|+|+.|. +.+++++.+++++++... ...+|.+..|.++||+++++++.. ..+..++++ +| ++|.|++
T Consensus 2 ~~~~~~g~-----p~~~~~~~~~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~-~~g~~~~~~~~I--iit~Gs~ 70 (350)
T TIGR03537 2 LFDFGTGD-----PKEPTPPFIRKALIDAVP---EVSQYPSALGTKALREAISGWFER-RFGVKLDPDAQV--LPSAGSK 70 (350)
T ss_pred eEeccCCC-----CCCCCCHHHHHHHHHHHh---ccCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCcE--EEcCChH
Confidence 68999995 235668889988877653 356799999999999999999865 544446665 65 5999999
Q ss_pred hHHHHHHHHHHHhcCC---CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 88 GALRVGAEFLHRILNY---TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 88 ~al~~~~~~l~~l~~g---d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++.++++++ +++| |+|++++|+|+.|...++..|+ +++.+++..++.+.+|++.+++++.+ ++.+++.++
T Consensus 71 ~ai~~~~~~~--~~~g~~~d~Vl~~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~~---~~~~i~i~~ 144 (350)
T TIGR03537 71 EAIFHFPLVF--IDPEEDRRRVIFGTPGYPVYERGALFAGG-EPTAVKLKKEDGFLLRLEKVEKSILE---ETKIVWINY 144 (350)
T ss_pred HHHHHHHHHH--cCCCCCCceEEEcCCCCcchHHHHHhcCC-EEEEcccCcccCCccCHHHHHHhhhh---ccEEEEEeC
Confidence 9999998876 5677 6999999999999999999999 99999874334456799999887753 344555567
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. +|.++|++++++||+| ++|..+.++.
T Consensus 145 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~D--e~y~~~~~~~ 185 (350)
T TIGR03537 145 PHNPTGATAPRSYLKETIAMCREHGIILCSD--ECYTEIYFGE 185 (350)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHcCcEEEEe--ccccccccCC
Confidence 9999996 6888899999999999 9998876653
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=190.36 Aligned_cols=174 Identities=16% Similarity=0.076 Sum_probs=141.6
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..+|+|++|. +++++++.++++..+.+.+ ....|.+..|.++||+++++++.. ..+..+++++| ++|.|+
T Consensus 24 ~~~i~l~~g~-----~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~la~~~~~-~~~~~~~~~~i--~~t~g~ 93 (382)
T PRK06108 24 EGVLPLWFGE-----SDLPTPDFIRDAAAAALAD--GETFYTHNLGIPELREALARYVSR-LHGVATPPERI--AVTSSG 93 (382)
T ss_pred CCeEEecCCC-----CCCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-HhCCCcCcceE--EEeCCh
Confidence 3689999995 3356788999998877754 345699999999999999999854 44434666775 589999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC-cCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP-EKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++++.+++.++ ++|||+|++++|+|+.|...++..|+ +++.+++... +.+.+|++.+++.+. +++.+++.++|
T Consensus 94 ~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~~~l~~~~~---~~~~~i~l~~p 167 (382)
T PRK06108 94 VQALMLAAQAL--VGPGDEVVAVTPLWPNLVAAPKILGA-RVVCVPLDFGGGGWTLDLDRLLAAIT---PRTRALFINSP 167 (382)
T ss_pred HHHHHHHHHHh--cCCCCEEEEeCCCccchHHHHHHCCC-EEEEeeCCCCCCCccCCHHHHHHhcC---ccceEEEEECC
Confidence 99999998877 67999999999999999999999999 8999988432 235679999988774 34445555689
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|+++++++|.| ++|.++.++
T Consensus 168 ~NPtG~~~~~~~~~~l~~~~~~~~~~li~D--e~y~~~~~~ 206 (382)
T PRK06108 168 NNPTGWTASRDDLRAILAHCRRHGLWIVAD--EVYERLYYA 206 (382)
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCcEEEEe--hhhhhhccC
Confidence 999996 6889999999999999 999998775
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-24 Score=190.38 Aligned_cols=178 Identities=15% Similarity=0.043 Sum_probs=141.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
++|...|+|+.|.+ +..+++.+.++..++..+ .....|.+..|.++||+++++++.. ..+..+++++| ++|
T Consensus 26 ~~~~~~i~l~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~-~~g~~~~~~~i--~~t 96 (386)
T PRK07550 26 GADGPLIDLSQAVP-----GYPPPPELLRALAEAAAD-PAAHLYGPVEGLPELREAYAAHYSR-LYGAAISPEQV--HIT 96 (386)
T ss_pred hcCCCeEEeCCCCC-----CCCCCHHHHHHHHHHHhC-cCCcCCCCCCCCHHHHHHHHHHHHH-HhCCCCCcceE--EEe
Confidence 35678999999952 234578888887776543 2456799999999999999999865 54444667775 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.+++.++ +.|||+|++++|+|+.|..+++..|+ +++.+++..++.+.+|.+.+++.+.. ++.+++..
T Consensus 97 ~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~l~~~~~~---~~~~v~~~ 170 (386)
T PRK07550 97 SGCNQAFWAAMVTL--AGAGDEVILPLPWYFNHKMWLDMLGI-RPVYLPCDEGPGLLPDPAAAEALITP---RTRAIALV 170 (386)
T ss_pred cCcHHHHHHHHHHh--cCCCCEEEEcCCCCcchHHHHHhcCC-EEEEEecCCCcCCCCCHHHHHHHhcc---cCcEEEEe
Confidence 99999999998887 67999999999999999999999999 99999985334455688888887753 23333335
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|++|+++||+| ++|.++.++
T Consensus 171 ~P~NPtG~~~~~~~~~~i~~~~~~~~~~iI~D--d~y~~~~~~ 211 (386)
T PRK07550 171 TPNNPTGVVYPPELLHELYDLARRHGIALILD--ETYRDFDSG 211 (386)
T ss_pred CCCCCCCcccCHHHHHHHHHHHHHcCeEEEEe--ccchhhccC
Confidence 79999996 6889999999999999 999988654
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=190.39 Aligned_cols=176 Identities=14% Similarity=0.096 Sum_probs=141.6
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t~G 85 (218)
..+|+|+.|.+ ++.+++.++++..+.... ....|.|..|.++||+++++++.. .++..+.+ ++| ++|.|
T Consensus 30 ~~~i~l~~~~~-----~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~~~i--~it~G 99 (391)
T PRK07309 30 PGILKLTLGEP-----DFTTPDHVKEAAKRAIDA--NQSHYTGMAGLLELRQAAADFVKE-KYNLDYAPENEI--LVTIG 99 (391)
T ss_pred CCeEEcCCCCC-----CCCCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCCCCcE--EEeCC
Confidence 56899999962 245678888888776643 345699999999999999999965 54443443 555 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.++++++ +.+||+|++++|+|+.|..+++..|+ +++.++. +.+.+.+|++.+++.+.+.+++..+++.++|
T Consensus 100 ~~~al~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~~i~l~~P 175 (391)
T PRK07309 100 ATEALSASLTAI--LEPGDKVLLPAPAYPGYEPIVNLVGA-EIVEIDT-TENDFVLTPEMLEKAILEQGDKLKAVILNYP 175 (391)
T ss_pred hHHHHHHHHHHh--cCCCCEEEEeCCCCcchHHHHHHcCC-EEEEEec-CCcCCcCCHHHHHHHhhccCCCeEEEEEECC
Confidence 999999998876 67999999999999999999999999 8988886 2334568999999888653334445555689
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|++|++++|.| ++|..+.++
T Consensus 176 ~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D--~~y~~~~~~ 214 (391)
T PRK07309 176 ANPTGVTYSREQIKALADVLKKYDIFVISD--EVYSELTYT 214 (391)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCcEEEEE--ccccceeeC
Confidence 999996 6888999999999999 999998874
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-24 Score=190.68 Aligned_cols=179 Identities=10% Similarity=0.015 Sum_probs=141.0
Q ss_pred CCCCceeeeeeeEEeCCCC-CccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEEC-KPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~-~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|..+|+|++|.+ +. .+++++.+.++..+... ...+|.+..|.++||+++++++.. .+...+++++| ++
T Consensus 30 ~~~~~~i~l~~g~p---~~~~~~~~~~i~~~~~~~~~---~~~~Y~~~~G~~~lr~~ia~~~~~-~~~~~~~~~~i--~~ 100 (404)
T PRK09265 30 EEGHKILKLNIGNP---APFGFEAPDEILRDVIRNLP---TAQGYSDSKGLFSARKAIMQYYQQ-KGIPDVDVDDI--YI 100 (404)
T ss_pred HcCCCeEEecCCCC---CcCCCCCCHHHHHHHHHHhh---cCCCCCCCCCcHHHHHHHHHHHhc-cCCCCCCcccE--EE
Confidence 35789999999963 22 23467778777665443 246799999999999999999965 54434667776 58
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.++...++.+.+|++.+++.+. +++.+++.
T Consensus 101 t~G~~~~l~~~~~~~--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~l 174 (404)
T PRK09265 101 GNGVSELIVMAMQAL--LNNGDEVLVPAPDYPLWTAAVSLSGG-KPVHYLCDEEAGWFPDLDDIRSKIT---PRTKAIVI 174 (404)
T ss_pred eCChHHHHHHHHHHh--CCCCCEEEEeCCCCcChHHHHHHcCC-EEEEEecccccCCCCCHHHHHHhcc---ccceEEEE
Confidence 999999999988877 67999999999999999999999998 8888876323345678888888774 23444555
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|.++|++++++||+| ++|.++.+++
T Consensus 175 ~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~~ 217 (404)
T PRK09265 175 INPNNPTGAVYSKELLEEIVEIARQHNLIIFAD--EIYDKILYDG 217 (404)
T ss_pred ECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe--hhhhhccCCC
Confidence 689999996 6888899999999999 9999988753
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=189.18 Aligned_cols=172 Identities=14% Similarity=0.092 Sum_probs=133.3
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|..+|+|++|.+ .+++++.++++..+... ....|.+..|.++||+++++++.. .++..+++++| ++|.|
T Consensus 23 ~~~~i~l~~~~p-----~~~~~~~~~~a~~~~~~---~~~~Y~~~~G~~~lr~aia~~l~~-~~g~~~~~~~I--~it~G 91 (374)
T PRK05839 23 EYKGLDLTIGEP-----QFETPKFIQDALKNNAH---LLNKYPKSAGEESLREAQRGFFKR-RFKIELKENEL--IPTFG 91 (374)
T ss_pred CCCeEEcCCCCC-----CCCCCHHHHHHHHHHhh---ccCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCcceE--EEecC
Confidence 669999999952 34567888888776542 356799999999999999999865 54544677876 59999
Q ss_pred ChhHHHHHHHHHHHh-cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 86 GTGALRVGAEFLHRI-LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 86 ~~~al~~~~~~l~~l-~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++++.++++++. . .+||.|++++|+|+.|...++..|+ +++.+++..++.+.+|+... .+. +..+++.++
T Consensus 92 ~~~al~~~~~~~~-~~~~gd~vlv~~P~y~~~~~~~~~~g~-~v~~v~~~~~~~~~~d~~~~--~~~----~~k~v~i~n 163 (374)
T PRK05839 92 TREVLFNFPQFVL-FDKQNPTIAYPNPFYQIYEGAAIASRA-KVLLMPLTKENDFTPSLNEK--ELQ----EVDLVILNS 163 (374)
T ss_pred cHHHHHHHHHHHh-cCCCCCEEEECCCCchhhHHHHHhcCC-EEEEeecccccCCcCCcchh--hhc----cccEEEEeC
Confidence 9999998877652 2 3699999999999999999999999 99999874333344454332 232 233444469
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|+++|++++++||+| |+|.++.++
T Consensus 164 P~NPTG~~~s~~~l~~i~~~~~~~~~~ii~D--E~Y~~~~~~ 203 (374)
T PRK05839 164 PNNPTGRTLSLEELIEWVKLALKHDFILIND--ECYSEIYEN 203 (374)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHcCCEEEec--cchhhcccC
Confidence 9999998 6888899999999999 999998654
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=188.99 Aligned_cols=174 Identities=14% Similarity=0.098 Sum_probs=139.8
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEec
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTL 84 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~ 84 (218)
++.+|||++|. ++ +++++.+.++.++..+. ...+|.+..|.++||+++++++.. ..+....++ +| ++|.
T Consensus 29 ~~~~i~l~~g~---~~--~~~~~~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~~a~~l~~-~~~~~~~~~~~i--~~t~ 98 (386)
T PRK09082 29 EHGAINLSQGF---PD--FDGPPYLVEALAYAMAA--GHNQYPPMTGVAALREAIAAKTAR-LYGRQYDADSEI--TVTA 98 (386)
T ss_pred hCCEEEecCCC---CC--CCCCHHHHHHHHHHHHc--CCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCCCCcE--EEeC
Confidence 45789999995 23 34577888887777643 356799999999999999998754 433334443 44 5899
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.+++.++ ++|||+|++++|+|++|...++..|+ +++.++.. .+.+.+|++.+++.+. ++..+++.++
T Consensus 99 G~~~al~~~~~~~--~~~gd~Vli~~p~y~~~~~~~~~~g~-~~~~~~~~-~~~~~~d~~~l~~~~~---~~~~~v~l~~ 171 (386)
T PRK09082 99 GATEALFAAILAL--VRPGDEVIVFDPSYDSYAPAIELAGG-RAVRVALQ-PPDFRVDWQRFAAAIS---PRTRLIILNT 171 (386)
T ss_pred CHHHHHHHHHHHH--cCCCCEEEEeCCCchhhHHHHHHcCC-EEEEEecC-cccccCCHHHHHHhcC---ccceEEEEeC
Confidence 9999999988876 68999999999999999999999999 99999883 3356789999988875 2344455578
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 172 p~NPtG~~~~~~~~~~i~~~a~~~~i~li~D--e~y~~~~~~ 211 (386)
T PRK09082 172 PHNPSGTVWSAADMRALWQLIAGTDIYVLSD--EVYEHIVFD 211 (386)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHCCEEEEEe--hhhhhhccC
Confidence 9999995 7889999999999999 999988875
|
|
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-24 Score=189.03 Aligned_cols=174 Identities=13% Similarity=0.046 Sum_probs=140.5
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..+|||++|. +++++++.++++.+++..+ ....|.|..|.++||+++++++.. ..+..+++++| ++|.|+
T Consensus 33 ~~~i~l~~~~-----~~~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~i--~~t~G~ 102 (391)
T PRK08361 33 ENVISLGIGE-----PDFDTPKNIKEAAKRALDE--GWTHYTPNAGIPELREAIAEYYKK-FYGVDVDVDNV--IVTAGA 102 (391)
T ss_pred cCeEEcCCCC-----CCCCCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCcccE--EEeCCh
Confidence 4689999995 2344578889888877653 345799999999999999999854 33333666765 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++++.++++++ +.|||+|++++|+|++|...++..|+ +++.+++..+..+.+|++.+++.+.. ++.+++.++||
T Consensus 103 ~~al~~~~~~l--~~~g~~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~i~~---~~~~v~i~~p~ 176 (391)
T PRK08361 103 YEATYLAFESL--LEEGDEVIIPDPAFVCYVEDAKIAEA-KPIRIPLREENEFQPDPDELLELITK---RTRMIVINYPN 176 (391)
T ss_pred HHHHHHHHHHh--cCCCCEEEEcCCCCcccHHHHHHcCC-EEEEEecCCccCCCCCHHHHHHhccc---ccEEEEEeCCC
Confidence 99999998877 67999999999999999999999999 89999885433467899999888753 33445556899
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||. +|.++|++++++||.| ++|.++.++
T Consensus 177 NPtG~~~~~~~~~~l~~~~~~~~~~ii~D--e~y~~~~~~ 214 (391)
T PRK08361 177 NPTGATLDKEVAKAIADIAEDYNIYILSD--EPYEHFLYE 214 (391)
T ss_pred CCCCcCcCHHHHHHHHHHHHHcCeEEEEE--cccccceeC
Confidence 99997 6888899999999999 999988765
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.7e-24 Score=188.58 Aligned_cols=177 Identities=15% Similarity=0.133 Sum_probs=137.4
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t 83 (218)
.|..+|+|+.|. +++ .+++.+.++..+...+ ....+|.+..|.++||+++++++.. .++...+++ ++ ++|
T Consensus 27 ~~~~~i~l~~g~---p~~--~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~g~~~~~~~~i--~~t 97 (395)
T PRK08175 27 RGEDIIDFSMGN---PDG--PTPPHIVEKLCEVAQR-PDTHGYSTSRGIPRLRRAISRWYQD-RYDVDIDPESEA--IVT 97 (395)
T ss_pred cCCCeEEcCCCC---CCC--CCCHHHHHHHHHHHhC-CCcCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCcE--EEc
Confidence 477899999995 454 3466677666555433 2457899999999999999999865 544445555 44 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++. .+ +.+++.+++.+++..+++.+++.+
T Consensus 98 ~G~~~~l~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~~-~~--~~~~~~l~~~l~~~~~~~~~v~i~ 171 (395)
T PRK08175 98 IGSKEGLAHLMLAT--LDHGDTVLVPNPSYPIHIYGAVIAGA-QVRSVPLV-EG--VDFFNELERAIRESYPKPKMMILG 171 (395)
T ss_pred cCcHHHHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHHcCC-eEEEEecc-cC--CCcHHHHHHHHhhccCCceEEEEe
Confidence 99999999988776 68999999999999999999999999 89888873 22 224666777675432344555556
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|++|+++||.| ++|.++.++
T Consensus 172 ~p~NPtG~~~~~~~~~~i~~~a~~~~i~ii~D--e~y~~l~~~ 212 (395)
T PRK08175 172 FPSNPTAQCVELEFFEKVVALAKRYDVLVVHD--LAYADIVYD 212 (395)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEe--cchHhhccC
Confidence 89999996 6889999999999999 999988775
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=188.09 Aligned_cols=173 Identities=11% Similarity=0.102 Sum_probs=140.7
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G 85 (218)
..+|+|++|. +.+++++.++++..++... ....|.+..|.++||+++++++.. +++..++++ +| ++|.|
T Consensus 28 ~~~i~l~~~~-----p~~~~~~~~~~a~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~l~~-~~g~~~~~~~~I--~~t~G 97 (387)
T PRK07683 28 DNLISLTIGQ-----PDFPTPSHVKEAAKRAITE--NYTSYTHNAGLLELRKAACNFVKD-KYDLHYSPESEI--IVTIG 97 (387)
T ss_pred CCeEEecCCC-----CCCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCcE--EEeCC
Confidence 5679999995 2345678889988887753 356799999999999999999965 444445666 65 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.++++++ +.+||+|++++|+|++|...++..|+ +++.++.. .+.+.+|.+.+++.+.. ++.+++.++|
T Consensus 98 ~~~al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~l~~~~~~---~~~~i~i~~p 170 (387)
T PRK07683 98 ASEAIDIAFRTI--LEPGTEVILPAPIYPGYEPIIRLCGA-KPVFIDTR-STGFRLTAEALENAITE---KTRCVVLPYP 170 (387)
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCccchHHHHHHcCC-EEEEeecC-cccCCCCHHHHHHhcCc---CceEEEEeCC
Confidence 999999998876 67999999999999999999999999 89988773 34455677888877743 3445556799
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|++++++||.| ++|..+.++
T Consensus 171 ~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D--e~y~~~~~~ 209 (387)
T PRK07683 171 SNPTGVTLSKEELQDIADVLKDKNIFVLSD--EIYSELVYE 209 (387)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCeEEEEe--cccccceeC
Confidence 999998 6889999999999999 999998775
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-24 Score=188.99 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=146.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.+|.++|+|++|.+. ..+++++++.+.++..+.+.. .....|.+..|.++||+++++++.. ..+..+.+++| ++|
T Consensus 28 ~~~~~~i~l~~g~p~-~~~~~~~~~~~~~~~~~~l~~-~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~~~i--i~t 102 (403)
T TIGR01265 28 NPEKPIIPLSHGDPS-VFGNLRTDPEAEEAVKDALRS-GKFNGYAPSVGALAAREAVAEYLSS-DLPGKLTADDV--VLT 102 (403)
T ss_pred hcCCCeEEeCCCCCC-ccCCCCCCHHHHHHHHHHHhc-CCCCCCCCCCCCHHHHHHHHHHHHh-hcCCCCCHHHE--EEe
Confidence 358899999999631 124567788899988776643 2335799999999999999999865 44444566775 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ +.+||+|++++|+|+.|...++..|+ +++.++....+.+++|++.+++.+.. ++.+++.+
T Consensus 103 ~G~t~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~i~ 176 (403)
T TIGR01265 103 SGCSQAIEICIEAL--ANPGANILVPRPGFPLYDTRAAFSGL-EVRLYDLLPEKDWEIDLDGLEALADE---KTVAIVVI 176 (403)
T ss_pred cChHHHHHHHHHHh--CCCCCEEEEeCCCchhHHHHHHHcCC-EEEEecCCcccCCccCHHHHHHHhCc---CccEEEEe
Confidence 99999999999987 57999999999999999999999999 88888774333467899999887743 34445556
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|+++++++|.| ++|.++.++.
T Consensus 177 ~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~~ 218 (403)
T TIGR01265 177 NPSNPCGSVFSRDHLQKIAEVARKLGIPIIAD--EIYGHMVFGD 218 (403)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE--ccccccccCC
Confidence 89999996 6888999999999999 9999998764
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.8e-24 Score=192.06 Aligned_cols=169 Identities=17% Similarity=0.106 Sum_probs=135.1
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
+..+++|+.|. ++ +++++.+.++..+... ....|.+..|.++||+++++++.. .. ..+++| ++|.|
T Consensus 84 ~~~~i~L~~g~---p~--~~~~p~~~~~~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~-~~---~~~~~I--iit~G 149 (431)
T PRK15481 84 GTPLHDLAGGN---PD--PQRLPDLSRYFARLSR---TPRLYGDAPVSPELHAWAARWLRD-DC---PVAFEI--DLTSG 149 (431)
T ss_pred cchhhhhhcCC---CC--hhHhHHHHHHHHHhhh---hhhhcCCcCCCHHHHHHHHHHHhh-cc---CCcCeE--EEecC
Confidence 34678999994 33 3455667777766543 245799999999999999999753 21 123454 69999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++. + .++|++.+++.+.. ..+.++++++|
T Consensus 150 ~~~al~~~~~~l--~~pgd~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~~-~--~g~~~~~l~~~~~~--~~k~i~~~p~p 221 (431)
T PRK15481 150 AIDAIERLLCAH--LLPGDSVAVEDPCFLSSINMLRYAGF-SASPVSVD-A--EGMQPEKLERALAQ--GARAVILTPRA 221 (431)
T ss_pred cHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHHHHHcCC-eEEeeccC-C--CCCCHHHHHHHHhc--CCCEEEECCCC
Confidence 999999999887 68999999999999999999999999 99999873 3 35899999888853 23455666699
Q ss_pred CCCcHH--------HHHHHhhcC-eEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKH-HVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~-~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|+++ +++||+| ++|.+|.++
T Consensus 222 ~NPTG~~~s~~~~~~l~~la~~~~~~~ii~D--e~Y~~~~~~ 261 (431)
T PRK15481 222 HNPTGCSLSARRAAALRNLLARYPQVLVIID--DHFALLSSS 261 (431)
T ss_pred CCCCCccCCHHHHHHHHHHHHhcCCceEEec--CchhhhccC
Confidence 999997 788999998 9999999 999988764
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=185.29 Aligned_cols=174 Identities=17% Similarity=0.144 Sum_probs=140.0
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcC-CCceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLR-EGRAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-~~~v~~~~t~G 85 (218)
..+|+|++|.+ ++++++.+++|..+.... .....|.+..|.++||+++++++.. ..+.... +++| ++|.|
T Consensus 27 ~~~~~l~~g~~-----~~~~~~~~~~a~~~~~~~-~~~~~Y~~~~G~~~lr~~~~~~l~~-~~g~~~~~~~~i--~~t~G 97 (389)
T PRK05957 27 PGTISLGQGVV-----SYPPPPEAIEALNNFLAN-PENHKYQAVQGIPPLLEAITQKLQQ-DNGIELNNEQAI--VVTAG 97 (389)
T ss_pred CCeEEccCCCC-----CCCCCHHHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCeE--EEeCC
Confidence 46799999962 256788899988776643 2346799999999999999999854 4333334 4554 58999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++..+++++ ++|||+|++++|+|+.|...++..|+ +++.++. .+.+++|++.+++.+.. ++.+++.++|
T Consensus 98 ~~~~l~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~--~~~~~~d~~~l~~~i~~---~~klv~~~~p 169 (389)
T PRK05957 98 SNMAFMNAILAI--TDPGDEIILNTPYYFNHEMAITMAGC-QPILVPT--DDNYQLQPEAIEQAITP---KTRAIVTISP 169 (389)
T ss_pred hHHHHHHHHHHh--cCCCCEEEEeCCCCcCHHHHHHhcCC-EEEEeec--CCCCCcCHHHHHHhcCc---CceEEEEeCC
Confidence 999999888876 67999999999999999999999999 8999886 33467899999988853 3445555789
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
|||||. +|.++|+++++++|+| ++|.++.+++
T Consensus 170 ~NPtG~~~~~~~~~~i~~~a~~~~~~li~D--e~y~~~~~~~ 209 (389)
T PRK05957 170 NNPTGVVYPEALLRAVNQICAEHGIYHISD--EAYEYFTYDG 209 (389)
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCcEEEEe--ccchhccCCC
Confidence 999996 6888999999999999 9999998874
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-23 Score=183.78 Aligned_cols=174 Identities=11% Similarity=0.038 Sum_probs=137.9
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..|+|++|. .++++++.+++++.+.+.+ ....+.| |..|.++||+++++++.. .++..+++++| ++|.|+
T Consensus 27 ~~i~l~~~~-----~~~~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~-~~~~~~~~~~I--~it~G~ 97 (368)
T PRK03317 27 VPVRLNTNE-----NPYPPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTA-QTGVGLTVENV--WAANGS 97 (368)
T ss_pred ceeEecCCC-----CCCCCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhh-hccCCCChhhE--EECCCH
Confidence 458999995 2357788999988776532 1234678 457999999999999966 55545677776 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++++.++++++ ++|||+|+++.|+|+.|...++..|. +++.++. .+.+++|++.+++.+.+. +..+++.++||
T Consensus 98 ~~~l~~~~~~~--~~~gd~v~v~~P~y~~~~~~~~~~g~-~~~~~~~--~~~~~~d~~~l~~~~~~~--~~~~i~l~~p~ 170 (368)
T PRK03317 98 NEILQQLLQAF--GGPGRTALGFVPSYSMHPIIARGTHT-EWVEGPR--AADFTLDVDAAVAAIAEH--RPDVVFLTSPN 170 (368)
T ss_pred HHHHHHHHHHh--cCCCCEEEEeCCChHHHHHHHHhcCC-eeEEccc--CCCCCCCHHHHHHHHhcc--CCCEEEEeCCC
Confidence 99999999887 68999999999999999999999988 7877765 335688999999888642 23334446899
Q ss_pred CCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 167 NPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 167 NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||. ++.++++..++++|+| |+|.++.+..
T Consensus 171 NPtG~~~~~~~l~~l~~~~~~~lI~D--E~y~~~~~~~ 206 (368)
T PRK03317 171 NPTGTALPLDDVEAILDAAPGIVVVD--EAYAEFRRSG 206 (368)
T ss_pred CCCCCCCCHHHHHHHHHHCCceEEEe--CCchhhcccC
Confidence 99998 7888888778999999 9999986543
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=192.11 Aligned_cols=180 Identities=11% Similarity=0.021 Sum_probs=135.8
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc----------CCCCccCcCCCCcHHHHHHHHHHhcCCCCC--CCc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD----------DSLNHEYLPVLGLESFSSAATRMLLGGDAS--PPL 73 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~----------~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~--~~~ 73 (218)
..-+|+|+++. +. ...+.+.+..+..... ......|.+..|.++||+++++++.. ..+ ..+
T Consensus 37 p~g~i~L~~~E----n~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~-~~~~~~~v 109 (468)
T PLN02450 37 PSGIIQMGLAE----NQ--LSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSE-IRGNKVTF 109 (468)
T ss_pred CCeeEEeehhH----hH--hhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHH-hhCCCCCc
Confidence 34589999995 22 2335555554443210 01234599999999999999999954 322 225
Q ss_pred CCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-HhCCCcceeEeccCCcCccccHHHHHHHHhc
Q psy6266 74 REGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-NAGFTEAREYRYWNPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 74 ~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 152 (218)
++++| ++|.|+++++.+++.++ ++|||.|++++|+|+.|...+. ..|+ +++.+++..++.+.++++.+++.+.+
T Consensus 110 ~~~~I--iit~Ga~~al~~l~~~l--~~pGd~Vlv~~P~Y~~~~~~~~~~~g~-~~v~v~~~~~~~~~~~~~~le~~~~~ 184 (468)
T PLN02450 110 DPNKL--VLTAGATSANETLMFCL--AEPGDAFLLPTPYYPGFDRDLKWRTGV-EIVPIHCSSSNGFQITESALEEAYQQ 184 (468)
T ss_pred ChHHe--EEccChHHHHHHHHHHh--CCCCCEEEECCCCCCchHHHHhhcCCc-EEEEEecCCccCCcCCHHHHHHHHHH
Confidence 67776 59999999999998877 6899999999999999998888 4788 89999874345567788888887764
Q ss_pred C---CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 153 A---PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 153 ~---~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
. ..+..+++.++||||||. +|.++|++|+++||+| |+|.++.|++
T Consensus 185 ~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~D--E~Y~~~~f~~ 240 (468)
T PLN02450 185 AQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISD--EIYSGTVFDS 240 (468)
T ss_pred HHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEE--ccccccccCC
Confidence 2 223444555689999997 6889999999999999 9999988764
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=183.16 Aligned_cols=174 Identities=14% Similarity=0.095 Sum_probs=135.4
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G 85 (218)
..+|||++|.+ +. +.++.+.++..+.+.. ...+|.+..|.++||+++++++.. ..+....++ +| ++|.|
T Consensus 24 ~~~i~l~~g~p---~~--~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~~i--~~t~G 93 (387)
T PRK07777 24 TGAVNLGQGFP---DE--DGPPEMLEAAQEAIAG--GVNQYPPGPGIPELRAAIAAQRRR-RYGLEYDPDTEV--LVTVG 93 (387)
T ss_pred CCeEEccCCCC---CC--CCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCcE--EEeCC
Confidence 47899999973 32 3345567666665543 346799999999999999998754 333334444 55 58999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC-cCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP-EKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++|+.+++.++ +++||+|++++|+|+.|..+++..|+ +++.+++... ..+.+|++.+++.+.+ +..+++.++
T Consensus 94 ~~~al~~~~~~~--~~~gd~vli~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~~ 167 (387)
T PRK07777 94 ATEAIAAAVLGL--VEPGDEVLLIEPYYDSYAAVIAMAGA-HRVPVPLVPDGRGFALDLDALRAAVTP---RTRALIVNS 167 (387)
T ss_pred cHHHHHHHHHHh--cCCCCEEEEeCCCchhhHHHHHHCCC-EEEEeecCCccCCCcCCHHHHHHhcCc---ccEEEEEcC
Confidence 999999888766 67999999999999999999999999 8988888533 2356799999887743 344455568
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|+++++++|+| ++|.++.++
T Consensus 168 p~NPtG~~~~~~~~~~l~~~~~~~~~~li~D--e~y~~~~~~ 207 (387)
T PRK07777 168 PHNPTGTVLTAAELAAIAELAVEHDLLVITD--EVYEHLVFD 207 (387)
T ss_pred CCCCCCccCCHHHHHHHHHHHHhcCcEEEEe--ccchhcccC
Confidence 9999997 6889999999999999 999988774
|
|
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=188.59 Aligned_cols=178 Identities=16% Similarity=0.129 Sum_probs=148.7
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCC-CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSL-NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
..+|+++.|. ++.+..+....+++..++.+. ... ...|.+..|.++||+++++++.. ..+...++++| ++|.
T Consensus 89 ~~~i~f~~g~---p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~-~~g~~~~~~~I--iiT~ 162 (459)
T COG1167 89 PSVIDFAGGL---PDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLA-RRGISCEPEQI--VITS 162 (459)
T ss_pred CceecCCCCC---CCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHH-hcCCccCcCeE--EEeC
Confidence 6789999996 344445566777777766643 223 46899999999999999999984 44445677765 6999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ ++|||.|++.+|+|+....+++..|+ +++.+|+. ..++|++.+++.+++. +...++++++
T Consensus 163 G~q~al~l~~~~l--~~pGd~v~vE~PtY~~~~~~~~~~g~-~~~~vp~d---~~G~~~e~le~~~~~~-~~k~~y~~P~ 235 (459)
T COG1167 163 GAQQALDLLLRLL--LDPGDTVLVEDPTYPGALQALEALGA-RVIPVPVD---EDGIDPEALEEALAQW-KPKAVYVTPT 235 (459)
T ss_pred CHHHHHHHHHHHh--CCCCCEEEEcCCCcHHHHHHHHHcCC-cEEecCCC---CCCCCHHHHHHHHhhc-CCcEEEECCC
Confidence 9999999999987 68999999999999999999999999 99999873 3589999999999764 3457788999
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+|||||. +|.++|++|++|||+| ..|+.|.++.
T Consensus 236 ~qNPtG~tms~~rR~~Ll~lA~~~~~~IIED--D~y~el~~~~ 276 (459)
T COG1167 236 FQNPTGVTMSLERRKALLALAEKYDVLIIED--DYYGELRYDG 276 (459)
T ss_pred CCCCCCCccCHHHHHHHHHHHHHcCCeEEee--CcchhhhcCC
Confidence 9999997 7999999999999999 9999988873
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.1e-23 Score=182.60 Aligned_cols=176 Identities=17% Similarity=0.175 Sum_probs=142.2
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC-CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD-SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
++++|||+.|. + ++++++.++++..+..++. ....+|.+..|.++||+++++++.. .++..+++++| ++|.
T Consensus 32 ~~~~~~l~~g~---p--~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~-~~~~~~~~~~i--~~t~ 103 (394)
T PRK06836 32 ADNVFDFSLGN---P--SVPPPAAVKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNR-RFGTPLTADHI--VMTC 103 (394)
T ss_pred CCCeEEecCcC---C--CCCCCHHHHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHH-HhCCCCCcCcE--EEeC
Confidence 35789999994 2 3456888999887766431 1246899999999999999999865 44444667776 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ +.+||+|++++|+|+.|..+++..|+ +++.++.. ++.+++|++.+++.+.. ++.+++.++
T Consensus 104 G~~~al~~~~~~l--~~~gd~Vli~~p~~~~~~~~~~~~g~-~v~~v~~~-~~~~~~d~~~l~~~~~~---~~~~v~~~~ 176 (394)
T PRK06836 104 GAAGALNVALKAI--LNPGDEVIVFAPYFVEYRFYVDNHGG-KLVVVPTD-TDTFQPDLDALEAAITP---KTKAVIINS 176 (394)
T ss_pred ChHHHHHHHHHHh--cCCCCEEEEcCCCCccHHHHHHHcCC-EEEEEecC-CccCcCCHHHHHhhcCc---CceEEEEeC
Confidence 9999999988877 67999999999999999999999999 99999884 44467899999888853 344455568
Q ss_pred CCCCcHH--------HHHHHhhc------CeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDK------HHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~------~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|+++|++ |+++||.| ++|.++.++
T Consensus 177 p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~D--e~y~~~~~~ 222 (394)
T PRK06836 177 PNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISD--EPYREIVYD 222 (394)
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEe--ccccccccC
Confidence 9999998 68888988 89999999 999988775
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=191.26 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=120.9
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCC--CCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDAS--PPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL- 121 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~--~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~- 121 (218)
..|.+..|.++||+++++++.. ..+ ..+++++| ++|.|+++|+.++++++ ++|||.|++++|+|+.|...++
T Consensus 88 ~~y~~~~G~~~LR~aiA~~l~~-~~g~~v~v~pe~I--vit~Ga~~al~~l~~~l--~~pGD~Vlv~~P~Y~~~~~~~~~ 162 (496)
T PLN02376 88 ANFQDYHGLKKFRQAIAHFMGK-ARGGKVTFDPERV--VMSGGATGANETIMFCL--ADPGDVFLIPSPYYAAFDRDLRW 162 (496)
T ss_pred hccCCCCCcHHHHHHHHHHHHH-HhCCCCcCChhhE--EEccchHHHHHHHHHHh--CCCCCEEEECCCCccchHHHHHh
Confidence 4699999999999999999964 433 33677876 59999999999999887 6899999999999999998887
Q ss_pred HhCCCcceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCce
Q psy6266 122 NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRI 190 (218)
Q Consensus 122 ~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~ 190 (218)
..|+ +++.+++...+.++++++.++++++++ ..+..+++.++||||||. +|+++|++|+++||+| |
T Consensus 163 ~~G~-~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~D--E 239 (496)
T PLN02376 163 RTGV-EIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVD--E 239 (496)
T ss_pred hCCC-EEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE--c
Confidence 4798 899999854455788999987765431 234455555799999998 6889999999999999 9
Q ss_pred eeccCCCCC
Q psy6266 191 NMCGLTTQN 199 (218)
Q Consensus 191 ~y~~l~~~n 199 (218)
+|..+.|++
T Consensus 240 iY~~~~f~~ 248 (496)
T PLN02376 240 IYAATVFAG 248 (496)
T ss_pred CccccccCC
Confidence 999988764
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6e-23 Score=181.00 Aligned_cols=175 Identities=14% Similarity=0.095 Sum_probs=141.3
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|..+|||+.|. ++ +++++.++++..+.+.. ...+|.+..|.+.||+++++++.. .++..+.+++| ++|.|
T Consensus 30 ~~~~~~l~~~~---~~--~~~~~~~~~~~~~~~~~--~~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~~i--~~~~g 99 (393)
T PRK05764 30 GRDVISLGAGE---PD--FDTPEHIKEAAIEALDD--GKTKYTPAAGIPELREAIAAKLKR-DNGLDYDPSQV--IVTTG 99 (393)
T ss_pred cCCEEEeCCCC---CC--CCCCHHHHHHHHHHHhc--CCCCcCCCCChHHHHHHHHHHHHH-HhCCCCCHHHE--EEeCC
Confidence 56789999995 23 45678899888776643 345699999999999999999854 43333566765 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.+++.++ +.+||.|++++|+|+.|..+++..|+ +++.++....+.+.+|++.+++.+.. +..+++.++|
T Consensus 100 ~~~a~~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~p 173 (393)
T PRK05764 100 AKQALYNAFMAL--LDPGDEVIIPAPYWVSYPEMVKLAGG-VPVFVPTGEENGFKLTVEQLEAAITP---KTKALILNSP 173 (393)
T ss_pred cHHHHHHHHHHh--cCCCCEEEecCCCCcchHHHHHHcCC-EEEEEecCcccCCcCCHHHHHHhhCc---cceEEEEECC
Confidence 999999988876 67999999999999999999999999 99999885334567789999887742 3444455789
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|++|+++++.| ++|..+.++
T Consensus 174 ~NPtG~~~~~~~~~~l~~~a~~~~~~ii~D--e~y~~~~~~ 212 (393)
T PRK05764 174 SNPTGAVYSPEELEAIADVAVEHDIWVLSD--EIYEKLVYD 212 (393)
T ss_pred CCCCCcccCHHHHHHHHHHHHHCCcEEEEe--ccccceeeC
Confidence 999997 6888999999999999 999988774
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-24 Score=185.87 Aligned_cols=184 Identities=17% Similarity=0.079 Sum_probs=143.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHH-HhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEecc
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKE-LAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLS 85 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G 85 (218)
.+|||+.|.+....++ ++++.+.++..+ .... ...+.|.++.|.++||+++++++.+ ..+...+++ .| ++|.|
T Consensus 2 ~~I~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~~~i--~~~~G 76 (363)
T PF00155_consen 2 DVINLGSNAPLLLSQN-PPPPAAIKAAIRGAATS-SSFLGYPPPQGYPELREAIADFLGR-RYGVPVDPEANI--LVTSG 76 (363)
T ss_dssp TEEESSSSSTSSTTSS-HHHHHHHHHHHHHHHHH-TGCTSSTCTTHHHHHHHHHHHHHHH-HHTHHTTGGEGE--EEESH
T ss_pred CEEEEECCCCCCcccc-cchHHHHHHHHHHhhcc-cccccCCCchhhHHHHHHHHHHhhh-ccCcccccceEE--EEecc
Confidence 6899999987554444 345555555443 2222 3577899999999999999999974 344335555 54 58888
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCC---CcEEEEc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD---NSVIILH 162 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~~iil~ 162 (218)
+++++.++..++. .++||.|++++|+|+.|...++..|+ +++.+++...+.+.+|++.+++.+++... +..+++.
T Consensus 77 ~~~~~~~~~~~~~-~~~~~~vlv~~P~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~ 154 (363)
T PF00155_consen 77 AQAALFLLLRLLK-INPGDTVLVPDPCYPSYIEAARLLGA-EVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLI 154 (363)
T ss_dssp HHHHHHHHHHHHH-SSTTSEEEEEESSSTHHHHHHHHTTS-EEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEE
T ss_pred cccchhhhhhccc-ccccccceecCCccccccccccccCc-eeeeccccccccccccccccccccccccccccccceeee
Confidence 8888888776552 45899999999999999999999999 89999975456678899999999986421 2346666
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCH
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNL 200 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni 200 (218)
++||||||. +|+++|++++++||+| ++|..+.+++-
T Consensus 155 ~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~D--e~y~~~~~~~~ 198 (363)
T PF00155_consen 155 CNPNNPTGSVLSLEELRELAELAREYNIIIIVD--EAYSDLIFGDP 198 (363)
T ss_dssp ESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEE--ETTTTGBSSSS
T ss_pred cccccccccccccccccchhhhhcccccceeee--eceeccccCCC
Confidence 899999997 5777799999999999 99999999965
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.6e-23 Score=178.49 Aligned_cols=167 Identities=16% Similarity=0.113 Sum_probs=126.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.+|..+|||++|. .++.+++.+.+++++... ...+|. ..|.++||+++++++ + +++++| ++|
T Consensus 27 ~~~~~~i~l~~~~-----~~~~~~~~~~~~~~~~~~---~~~~Y~-~~~~~~lr~~ia~~~-~------~~~~~I--~it 88 (357)
T PRK14809 27 LDPDDLVKLSSNE-----NPHGPSPAAVEAIREAAE---RVHSYP-KASHADLTAALADRW-D------VSPEQV--WLA 88 (357)
T ss_pred CCccceeEecCCC-----CCCCCCHHHHHHHHHHHh---hhhcCC-CCCHHHHHHHHHHHh-C------CCcceE--EEC
Confidence 3567899999995 234567788888776653 246785 479999999999987 3 456665 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ ++|||+|++++|+|+.|....+..|+ .++.+++...+.+.++.+.+.+... ..+.+++ +
T Consensus 89 ~G~~~al~~~~~~~--~~~gd~V~v~~P~y~~~~~~~~~~g~-~~~~~~l~~~~~~~~~~~~~~~~~~---~~k~i~l-~ 161 (357)
T PRK14809 89 NGGDGALDYLARAM--LDPGDTVLVPDPGFAYYGMSARYHHG-EVREYPVSKADDFEQTADTVLDAYD---GERIVYL-T 161 (357)
T ss_pred CCHHHHHHHHHHHh--cCCCCEEEEeCCChHHHHHHHHHcCC-eEEEEecccCcCCCcCHHHHHHhhc---CCcEEEE-e
Confidence 99999999998877 68999999999999999988898998 8988887433345566666655432 2234444 6
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +++++++ ++++||+| ++|.++.++
T Consensus 162 ~p~NPTG~~~s~~~~~~l~~~~~-~~~~iI~D--e~y~~~~~~ 201 (357)
T PRK14809 162 SPHNPTGSEIPLDEVEALAERTD-EETLVVVD--EAYGEFAER 201 (357)
T ss_pred CCCCCCCcCCCHHHHHHHHHhCc-cCcEEEEe--chhhhccCC
Confidence 89999998 3444444 37899999 999998765
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9e-23 Score=179.26 Aligned_cols=175 Identities=12% Similarity=0.104 Sum_probs=131.0
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCC--CCCcCCCceEEEEeccC
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDA--SPPLREGRAFGVQTLSG 86 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~~v~~~~t~G~ 86 (218)
+++|+.|. ..+++++.+++++.+.+.......+| |..|.++||+++++++.. .. +..+++++| ++|.|+
T Consensus 30 ~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~-~~~~~~~v~~~~I--~it~Ga 100 (374)
T PRK02610 30 LDRLDTNE-----FPYDLPPDLKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNE-SAAGSSQITPANI--SVGNGS 100 (374)
T ss_pred eeEecCCC-----CCCCCCHHHHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCc-cccccCCCCHHHE--EEcCCh
Confidence 78899995 24577889999887766431113568 457999999999999865 43 233667776 599999
Q ss_pred hhHHHHHHHHHHHhcCCC-eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCCcEEEEccc
Q psy6266 87 TGALRVGAEFLHRILNYT-TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDNSVIILHAC 164 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd-~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~iil~~~ 164 (218)
++++..++.++ +.+|| .|++++|+|+.|...++..|+ +++.+++ ..+.+++|++.+++.+++. .++..+++.++
T Consensus 101 ~~al~~~~~~~--~~~g~~~Vlv~~P~y~~~~~~~~~~g~-~~~~~~~-~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~ 176 (374)
T PRK02610 101 DELIRSLLIAT--CLGGEGSILVAEPTFSMYGILAQTLGI-PVVRVGR-DPETFEIDLAAAQSAIEQTQNPPVRVVFVVH 176 (374)
T ss_pred HHHHHHHHHHH--cCCCCCeEEEcCCChHHHHHHHHHcCC-EEEEecC-CcccCCCCHHHHHHHHHhhcCCCceEEEEeC
Confidence 99998776655 45786 899999999999999999999 9999986 3445789999999888641 12344444457
Q ss_pred CCCCcHH-----HHHHHhh-cCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ-----QVAHMVD-KHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~-~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. ++.++++ .++++||+| ++|.+|.+.
T Consensus 177 P~NPTG~~~s~~~l~~l~~~~~~~~iI~D--e~Y~~~~~~ 214 (374)
T PRK02610 177 PNSPTGNPLTAAELEWLRSLPEDILVVID--EAYFEFSQT 214 (374)
T ss_pred CCCCCCCCCCHHHHHHHHhccCCcEEEEe--ccccccCcc
Confidence 9999998 3333332 258999999 999998654
|
|
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=179.10 Aligned_cols=175 Identities=14% Similarity=0.042 Sum_probs=136.7
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|+|+.|. +++++++.++++..+... ...+|.+..|.++||+++++++.. .+ ...++++| ++|.
T Consensus 28 ~~~~~i~l~~~~-----~~~~~~~~~~~a~~~~~~---~~~~Y~~~~g~~~lr~~ia~~~~~-~~-~~~~~~~i--~~t~ 95 (397)
T PRK07568 28 RGIKVYHLNIGQ-----PDIKTPEVFFEAIKNYDE---EVLAYSHSQGIPELREAFAKYYKK-WG-IDVEPDEI--LITN 95 (397)
T ss_pred hCCCEEEecCCC-----CCCCCCHHHHHHHHHHhc---CCcCcCCCCCCHHHHHHHHHHHHH-hC-CCCCcceE--EEcC
Confidence 356789999995 234557888888776542 356799999999999999998853 32 23566665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccc-cHHHHHHHHhcCCCCcEEEEcc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAV-DFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~-d~~~~~~~l~~~~~~~~iil~~ 163 (218)
|+++|+.+++.++ ++|||+|++++|+|++|..+++..|+ +++.++....+.+.. +++.+++.+. ++..+++.+
T Consensus 96 G~~~al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~v~~~~~~g~~~~~~~~l~~~~~---~~~~~v~i~ 169 (397)
T PRK07568 96 GGSEAILFAMMAI--CDPGDEILVPEPFYANYNGFATSAGV-KIVPVTTKIEEGFHLPSKEEIEKLIT---PKTKAILIS 169 (397)
T ss_pred ChHHHHHHHHHHh--cCCCCEEEEecCCCccHHHHHHHcCC-EEEEeecCcccCCCCCCHHHHHHhcC---ccceEEEEE
Confidence 9999999998876 67999999999999999999999998 888888742232332 5677877764 234455556
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|++++++||.| ++|.++.+++
T Consensus 170 ~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~D--e~y~~~~~~~ 211 (397)
T PRK07568 170 NPGNPTGVVYTKEELEMLAEIAKKHDLFLISD--EVYREFVYDG 211 (397)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHCCcEEEEe--ccchhcccCC
Confidence 89999996 6888999999999999 9999987653
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-23 Score=184.11 Aligned_cols=165 Identities=12% Similarity=0.015 Sum_probs=133.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCch---HHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLP---VVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~---~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
..|..+|+|++|. ++.++.++. ++.+|+.+++.. +.++|+++.|+++||+++++++.. + . +
T Consensus 33 ~~g~~~~~L~~g~---p~~D~~tds~t~a~~~a~~~a~~~--g~~~Y~~~~g~~~Lreaia~~~~~-~--------~--v 96 (460)
T PRK13238 33 EAGYNPFLLKSED---VFIDLLTDSGTGAMSDRQWAAMMR--GDEAYAGSRSYYRLEDAVKDIFGY-P--------Y--T 96 (460)
T ss_pred HcCCCEEeCCCCC---CCCCCCCCCCchhhhHHHHHHHHh--CCcccCCCCCHHHHHHHHHHHhCC-C--------c--E
Confidence 3588999999996 333455555 678777666643 467899999999999999998743 2 2 3
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC------cCcc--ccHHHHHHHHhc
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP------EKRA--VDFTGMYEDLVN 152 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~------~~~~--~d~~~~~~~l~~ 152 (218)
++|.|+++|+.++++++ ++||| |++++|.|++|...++.+|+ +++.+++... +.+. +|++.+++.+.+
T Consensus 97 v~t~ggt~A~~~~~~al--l~pGD-Vii~~p~~~~~~~~i~~~G~-~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~ 172 (460)
T PRK13238 97 IPTHQGRAAEQILFPVL--IKKGD-VVPSNYHFDTTRAHIELNGA-TAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEE 172 (460)
T ss_pred EECCCHHHHHHHHHHHh--CCCCC-EEccCCcccchHHHHHHcCC-EEEEEeccccccccccccccCCcCHHHHHHHHhh
Confidence 69999999999998877 78999 99999999999999999999 9999987321 2343 899999999875
Q ss_pred CC-CCcEEEEcccCCCCcH-H--------HHHHHhhcCeEEEeeCC
Q psy6266 153 AP-DNSVIILHACAHNPTA-Q--------QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 153 ~~-~~~~iil~~~p~NPTG-~--------~l~~l~~~~~i~ii~D~ 188 (218)
.. +++.+++.++|||||| . +|.++|++|++++|+|+
T Consensus 173 ~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 173 VGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred cCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEC
Confidence 32 3566777789999998 2 79999999999999994
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-22 Score=178.12 Aligned_cols=163 Identities=13% Similarity=0.110 Sum_probs=128.0
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
++.+|+|+.|. .++.+++.++++..+...+ ...| |..|.++||+++++++ + +++++| ++|.|
T Consensus 28 ~~~~i~l~~ne-----n~~~~~~~v~~a~~~~~~~---~~~Y-p~~g~~~Lr~aia~~~-~------~~~~~I--~vt~G 89 (366)
T PRK01533 28 DHSFVKLASNE-----NPFGCSPRVLDELQKSWLD---HALY-PDGGATTLRQTIANKL-H------VKMEQV--LCGSG 89 (366)
T ss_pred CCceEEeCCCC-----CCCCCCHHHHHHHHHHHHh---cCcC-CCCCHHHHHHHHHHHh-C------CCcceE--EECCC
Confidence 45789999995 3467788899887765532 2335 7789999999999987 4 456665 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++ . .+.+|++.+++.+.+ ++.+++.++|
T Consensus 90 s~e~i~~~~~~l--~~~gd~vlv~~P~y~~~~~~~~~~g~-~v~~v~~-~--~~~~d~~~l~~~~~~---~~~~v~i~~P 160 (366)
T PRK01533 90 LDEVIQIISRAV--LKAGDNIVTAGATFPQYRHHAIIEGC-EVKEVAL-N--NGVYDLDEISSVVDN---DTKIVWICNP 160 (366)
T ss_pred HHHHHHHHHHHh--cCCCCEEEEcCCcHHHHHHHHHHcCC-EEEEeec-C--CCCcCHHHHHHHhCc---CCcEEEEeCC
Confidence 999999999877 67999999999999999999999999 8999987 2 346899999887753 3344445689
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +++++|+++++ +|.| ++|.++.++
T Consensus 161 ~NPTG~~~~~~~l~~l~~~~~~~~~-~iiD--e~y~~~~~~ 198 (366)
T PRK01533 161 NNPTGTYVNDRKLTQFIEGISENTL-IVID--EAYYEYVTA 198 (366)
T ss_pred CCCCCCCcCHHHHHHHHHhCCCCCE-EEEE--ccHHHhhcc
Confidence 999998 56666666665 4558 899888764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-22 Score=194.17 Aligned_cols=176 Identities=9% Similarity=-0.048 Sum_probs=139.7
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~ 81 (218)
-+.|.++|+|++|. .++++|+.|++|+.+.... . .| ..|.+++|+++++++.. .++...++ ++| +
T Consensus 693 ~~~g~~vI~LsinE-----~d~ppPp~V~eAi~eal~~--~--~~--s~g~pdlr~aLa~~la~-~~Gv~~d~~e~I--I 758 (1082)
T PLN02672 693 GSQESSLIHMDVDE-----SFLPVPSAVKASIFESFVR--Q--NI--SESETDPRPSILQFIKS-NYGFPTDSCTEF--V 758 (1082)
T ss_pred ccCCCCEEEEeCCC-----CCCCCCHHHHHHHHHHHhh--c--CC--CCCChHHHHHHHHHHHH-HhCcCCCCCCEE--E
Confidence 34688999999994 3467899999998776532 1 12 56789999999999866 55554543 344 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
+|.|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+|+...+.+.+|++.+.+.+.+. ++..+++
T Consensus 759 vt~Gs~elL~lll~aL--l~pGD~VLVp~PtY~~Y~~~a~~~Ga-~vv~Vpl~~e~gf~lD~d~Le~al~~~-~~~~I~L 834 (1082)
T PLN02672 759 YGDTSLALFNKLVLCC--VQEGGTLCFPAGSNGTYVSAAKFLKA-NFRRIPTKSSDGFKLTAKTLASTLETV-KKPWVYI 834 (1082)
T ss_pred EeCCHHHHHHHHHHHH--cCCCCEEEEeCCChHHHHHHHHHcCC-EEEEEecccccCCCCCHHHHHHHhccC-CCCEEEE
Confidence 8999999999888877 68999999999999999999999999 999999853456778999998888532 2234444
Q ss_pred cccCC-CCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 162 HACAH-NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 162 ~~~p~-NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++|| ||||. +|.++|++|+++||+| ++|.++.|++
T Consensus 835 -~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsD--EaYsdL~Fd~ 878 (1082)
T PLN02672 835 -SGPTINPTGLLYSNSEIEEILSVCAKYGARVIID--TSFSGLEYDT 878 (1082)
T ss_pred -ECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEe--CCCCccccCC
Confidence 5675 99998 7889999999999999 9999988864
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.4e-23 Score=185.08 Aligned_cols=174 Identities=9% Similarity=-0.053 Sum_probs=123.6
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCC-CcCCCceEEEEeccC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASP-PLREGRAFGVQTLSG 86 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~-~~~~~~v~~~~t~G~ 86 (218)
.+|+|++|. ++ +++++.+.++...++ . . .|.+..|.+++|+++++.+.....+. ...++...+++|.|+
T Consensus 95 ~~i~l~~g~---p~--~~~~~~~~~~~~~~~-~---~-~Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Ga 164 (521)
T TIGR03801 95 DIISYVIDQ---LG--FDPDAFLYEMCDGII-G---D-NYPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGG 164 (521)
T ss_pred HHHhhcCCC---CC--CCCCHHHHHHHHHhh-c---C-CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCH
Confidence 578999995 33 455666665555443 2 2 49888888888888886553302121 123331124699999
Q ss_pred hhHHHHHHHHHH---HhcCCCeEEecCCCchhHHHHHHHh--CCCcceeEeccCCcC-----ccccHHHHHHHHhcCCCC
Q psy6266 87 TGALRVGAEFLH---RILNYTTFYYSKPTWENHRLVFLNA--GFTEAREYRYWNPEK-----RAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 87 ~~al~~~~~~l~---~l~~gd~V~i~~P~y~~y~~~~~~~--g~~~~~~~~~~~~~~-----~~~d~~~~~~~l~~~~~~ 156 (218)
++|+..+++++. .++|||+|++++|+|++|..++++. |+ +++.++....+. +.+|++.+++.+. ++
T Consensus 165 t~al~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y~~~~~l~~~g~-~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~---~~ 240 (521)
T TIGR03801 165 TAAMCYIFDSLKANELLKKGDKIALMTPIFTPYLEIPELPRYDF-EVVRIKADEMTEDGTHTWQYPDKELEKLRD---PS 240 (521)
T ss_pred HHHHHHHHHHHhHhhcCCCCCEEEEeCCCcHHHHHHHHHhcCCc-EEEEeecccccccccccCCCCHHHHHHhcC---CC
Confidence 999999887632 2689999999999999999998887 56 677776632222 5668888876543 44
Q ss_pred cEEEEcccCCCCcHH--------HHHHHhhcC--eEEEeeCCceeeccCCC
Q psy6266 157 SVIILHACAHNPTAQ--------QVAHMVDKH--HVYLLRSGRINMCGLTT 197 (218)
Q Consensus 157 ~~iil~~~p~NPTG~--------~l~~l~~~~--~i~ii~D~r~~y~~l~~ 197 (218)
+.+++.++||||||. +|+++|++| +++||+| ++|..|.+
T Consensus 241 ~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~D--EvY~~f~~ 289 (521)
T TIGR03801 241 IKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTD--DVYGTFVD 289 (521)
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEEC--CCchhhcc
Confidence 555555689999998 678889876 9999999 99998875
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=182.81 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=119.9
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCC--CCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDAS--PPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL- 121 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~--~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~- 121 (218)
..|.+..|.++||+++|+++.. ..+ ..+++++| ++|.|+++|+.+++.++ ++|||.|++++|+|++|...+.
T Consensus 89 ~~y~~~~G~~~LR~aiA~~l~~-~~~~~~~v~p~~I--vit~G~t~al~~l~~~l--~~pGD~Vlv~~P~Y~~f~~~~~~ 163 (447)
T PLN02607 89 ALFQDYHGLKSFRQAMASFMEQ-IRGGKARFDPDRI--VLTAGATAANELLTFIL--ADPGDALLVPTPYYPGFDRDLRW 163 (447)
T ss_pred hccCCCcchHHHHHHHHHHHHH-hcCCCCCcCHHHe--EEcCChHHHHHHHHHHh--CCCCCEEEEcCCCCcchHHHHHh
Confidence 3588899999999999999964 433 23677776 59999999999988877 6899999999999999998887
Q ss_pred HhCCCcceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCce
Q psy6266 122 NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRI 190 (218)
Q Consensus 122 ~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~ 190 (218)
..|+ +++.+++...+.+.++++.++++++++ ..+.+++++++||||||. ++.++|++|++++|+| |
T Consensus 164 ~~g~-~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~D--E 240 (447)
T PLN02607 164 RTGV-KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSD--E 240 (447)
T ss_pred cCCc-EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEe--c
Confidence 4687 888888743445668999999888652 223455666899999997 7889999999999999 9
Q ss_pred eeccCCCCC
Q psy6266 191 NMCGLTTQN 199 (218)
Q Consensus 191 ~y~~l~~~n 199 (218)
+|..+.|++
T Consensus 241 iYa~~~f~~ 249 (447)
T PLN02607 241 IYSGSVFSA 249 (447)
T ss_pred cccccccCC
Confidence 999988764
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-22 Score=176.32 Aligned_cols=165 Identities=12% Similarity=0.041 Sum_probs=126.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCC-cCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPP-LREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~-~~~~~v~~~~ 82 (218)
.+|..+|||++|. ++ ++.++.++++..++.. ..+|.+..|.++||+++++++.. ..+.. +++++| ++
T Consensus 24 ~~~~~~i~l~~~~---p~--~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~l~~-~~~~~~~~~~~I--~i 91 (364)
T PRK07865 24 AHPDGIVDLSVGT---PV--DPVPPVIQEALAAAAD----APGYPTTAGTPELREAIVGWLAR-RRGVTGLDPAAV--LP 91 (364)
T ss_pred hcCCCEEEcCCCC---CC--CCCCHHHHHHHHHHHh----hCCCCCccCCHHHHHHHHHHHHH-HcCCCCCCcccE--EE
Confidence 3567899999995 33 3457788888766542 24799999999999999999965 54443 567765 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++++.+++.++. +.+||+|++++|+|+.|...++..|+ +++.++. + +++.. .+..+++.
T Consensus 92 t~G~~~~i~~~~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~~~~---------~----~~l~~--~~~~~v~~ 154 (364)
T PRK07865 92 VIGSKELVAWLPTLLG-LGPGDVVVIPELAYPTYEVGARLAGA-TVVRADS---------L----TELGP--QRPALIWL 154 (364)
T ss_pred ccChHHHHHHHHHHHc-CCCCCEEEECCCCcccHHHHHHhcCC-EEEecCC---------h----hhCCc--ccceEEEE
Confidence 9999999998776552 47999999999999999999999998 7777631 1 12222 23344444
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|.++|++++++||+| ++|.++.+++
T Consensus 155 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~~ 197 (364)
T PRK07865 155 NSPSNPTGRVLGVDHLRKVVAWARERGAVVASD--ECYLELGWDA 197 (364)
T ss_pred cCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--cchhhhccCC
Confidence 689999995 7888999999999999 9999887753
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=177.53 Aligned_cols=170 Identities=11% Similarity=0.006 Sum_probs=125.5
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC---CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD---SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
|..+|+|+.|. +.+++++.+.++..+.+.+. ....+|.|..|.++||+++++++++ .. +++++| ++
T Consensus 32 ~~~~i~l~~~~-----~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~-~~---~~~d~I--~i 100 (402)
T TIGR03542 32 SADIIRLGIGD-----TTQPLPASVIEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYR-GR---IDPEEI--FI 100 (402)
T ss_pred CCCeEEcCCCC-----CCCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHh-cC---CCHHHE--EE
Confidence 67899999994 33466888888877766431 1234699999999999999998754 33 566776 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCC----------CcceeEeccCCcCccccHHHHHHHHhc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGF----------TEAREYRYWNPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~----------~~~~~~~~~~~~~~~~d~~~~~~~l~~ 152 (218)
|.|+++++.++.. + +.+||+|++++|+|+.|..+++..|+ ++++.+++..++.+..++. +
T Consensus 101 t~Ga~~al~~l~~-l--~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~ 170 (402)
T TIGR03542 101 SDGAKCDVFRLQS-L--FGSDNTVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLP-------E 170 (402)
T ss_pred CCCcHHHHHHHHH-h--cCCCCEEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCCcc-------c
Confidence 9999999998643 3 46899999999999999999999886 1355555422222222321 1
Q ss_pred CCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 153 APDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
. ++..+++.++||||||. +|.++|++|+++||+| ++|.++.++.
T Consensus 171 ~-~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~D--e~y~~~~~~~ 222 (402)
T TIGR03542 171 E-PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFD--AAYSAFISDP 222 (402)
T ss_pred c-CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEE--chhhhhccCC
Confidence 1 23344444689999997 7889999999999999 9999988764
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-22 Score=174.41 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=126.5
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.++.+|+|+.|. ..+++++.+++|..+...+ ...+|.+ .|.++||+++++++ + +++++| ++|.
T Consensus 22 ~~~~~i~l~~~~-----~~~~~~~~~~~a~~~~~~~--~~~~y~~-~~~~~lr~aia~~~-~------~~~~~I--~it~ 84 (353)
T PRK05387 22 KLAKLIKLNTNE-----NPYPPSPKVLEAIRAALGD--DLRLYPD-PNADALRQAIAAYY-G------LDPEQV--FVGN 84 (353)
T ss_pred cccceeeccCCC-----CCCCCCHHHHHHHHHHhhh--hhhcCCC-CcHHHHHHHHHHHh-C------CCHHHE--EEcC
Confidence 345789999995 2345678899988876643 3457854 47799999999987 3 455665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++. +.+.+|++.+++ .... ++.++
T Consensus 85 G~~~al~~~~~~l--~~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~------~~~~-v~~~~ 152 (353)
T PRK05387 85 GSDEVLAHAFLAF--FNHDRPLLFPDITYSFYPVYAGLYGI-PYEEIPLD--DDFSIDVEDYLR------PNGG-IIFPN 152 (353)
T ss_pred CHHHHHHHHHHHh--cCCCCEEEEeCCCHHHHHHHHHHcCC-EEEEeecC--CCCCCCHHHHHh------cCCE-EEEeC
Confidence 9999999999887 68999999999999999999999999 89999872 346788887752 2233 45578
Q ss_pred CCCCcHH-----HHHHHhhcC-eEEEeeCCceeeccCC
Q psy6266 165 AHNPTAQ-----QVAHMVDKH-HVYLLRSGRINMCGLT 196 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~-~i~ii~D~r~~y~~l~ 196 (218)
||||||. ++.++++++ ++++|.| ++|..+.
T Consensus 153 P~NPtG~~~~~~~~~~l~~~~~~~~livD--e~y~~~~ 188 (353)
T PRK05387 153 PNAPTGIALPLAEIERILAANPDSVVVID--EAYVDFG 188 (353)
T ss_pred CCCCCCCCCCHHHHHHHHHhCCCcEEEEe--CcccccC
Confidence 9999998 677777654 9999999 9998764
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.6e-22 Score=169.06 Aligned_cols=175 Identities=13% Similarity=0.109 Sum_probs=146.8
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
++++|-|-+- |-+|+++|.|.+|+++.++. +..+|+ .+.++|-+++++|... +++-.+.++-| +.++|
T Consensus 24 ~~DvlPmWVA-----DMDf~~pp~i~~Al~~rvdh--GvfGY~--~~~~~~~~ai~~w~~~-r~~~~i~~e~i--~~~p~ 91 (388)
T COG1168 24 NEDVLPMWVA-----DMDFPTPPEIIEALRERVDH--GVFGYP--YGSDELYAAIAHWFKQ-RHQWEIKPEWI--VFVPG 91 (388)
T ss_pred CCCcceeeee-----cccCCCCHHHHHHHHHHHhc--CCCCCC--CCCHHHHHHHHHHHHH-hcCCCCCcceE--EEcCc
Confidence 3688888887 56789999999999888754 567887 7889999999999988 77766777754 58889
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc-CccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE-KRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
.--++.++.+++. .|||.|++..|.|++....++..|- +++..|+-.++ ...+|++.+++++.. ++..++++|+
T Consensus 92 VVpgi~~~I~~~T--~~gd~Vvi~tPvY~PF~~~i~~n~R-~~i~~pL~~~~~~y~iD~~~LE~~~~~--~~vkl~iLCn 166 (388)
T COG1168 92 VVPGISLAIRALT--KPGDGVVIQTPVYPPFYNAIKLNGR-KVIENPLVEDDGRYEIDFDALEKAFVD--ERVKLFILCN 166 (388)
T ss_pred chHhHHHHHHHhC--cCCCeeEecCCCchHHHHHHhhcCc-EEEeccccccCCcEEecHHHHHHHHhc--CCccEEEEeC
Confidence 9999999999884 5999999999999999999999997 89998885332 346699999999975 3345566689
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. +|.++|++|++.|||| |+-+.+++.+
T Consensus 167 PHNP~Grvwt~eeL~~i~elc~kh~v~VISD--EIHaDlv~~g 207 (388)
T COG1168 167 PHNPTGRVWTKEELRKIAELCLRHGVRVISD--EIHADLVLGG 207 (388)
T ss_pred CCCCCCccccHHHHHHHHHHHHHcCCEEEee--cccccccccC
Confidence 9999997 7999999999999999 8888887776
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.4e-22 Score=172.51 Aligned_cols=169 Identities=11% Similarity=0.030 Sum_probs=131.7
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
+..+|+|+.|. .++++++.++++..+.+.. ...+.|.+ .|.++||+++++++.- . ..++| ++|.|
T Consensus 25 ~~~~i~l~~~~-----~~~~~~~~~~~~~~~~~~~-~~~~~Y~~-~~~~~lr~~ia~~~~~--~----~~~~I--~~t~G 89 (356)
T PRK04870 25 ATGMVKLDAME-----NPYRLPAELRAELGERLAE-VALNRYPD-PRAAALKAALRAAMGV--P----AGADV--LLGNG 89 (356)
T ss_pred CCCceeCcCCC-----CCCCCCHHHHHHHHHHhhc-cccccCCC-CCHHHHHHHHHHHhCc--C----CCCcE--EEcCC
Confidence 45899999994 2467899999998876643 23567877 6899999999998732 1 12344 69999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++. +.+++|++.+++.+.+. ++.+++.++|
T Consensus 90 ~~~~i~~~~~~~--~~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~i~~~--~~~~~d~~~l~~~~~~~--~~~~v~l~~p 162 (356)
T PRK04870 90 SDELIQLLALAC--AKPGATVLAPEPGFVMYRMSAKLAGL-EFVGVPLT--ADFTLDLPAMLAAIAEH--RPALVFLAYP 162 (356)
T ss_pred HHHHHHHHHHHh--cCCCCEEEECCCCHHHHHHHHHHcCC-EEEEecCC--CCCCCCHHHHHHHhhcC--CCCEEEEcCC
Confidence 999999998876 68999999999999999999999999 99999873 34678999999888642 3333444689
Q ss_pred CCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. ++.++++..++++|.| ++|..+.++
T Consensus 163 ~NPtG~~~~~~~~~~i~~~~~~~ii~D--e~y~~~~~~ 198 (356)
T PRK04870 163 NNPTGNLFDDADVERIIEAAPGLVVVD--EAYQPFAGD 198 (356)
T ss_pred CCCCCCCCCHHHHHHHHHHCCCEEEEE--CCchhhcCc
Confidence 999998 4555555447889999 999988764
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-22 Score=174.65 Aligned_cols=165 Identities=15% Similarity=0.058 Sum_probs=127.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCC-cCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPP-LREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~-~~~~~v~~~~ 82 (218)
+++..+|||+.|. ++ +++++.++++.+++.. ..+|.+..|.++||+++++++.. ..+.. +.+++| ++
T Consensus 18 ~~~~~~i~l~~~~---p~--~~~~~~~~~~~~~~~~----~~~Y~~~~G~~~lr~~ia~~~~~-~~~~~~~~~~~I--~i 85 (357)
T TIGR03539 18 SHPDGIVDLSVGT---PV--DPVPPLIRAALAAAAD----APGYPQTWGTPELREAIVDWLER-RRGVPGLDPTAV--LP 85 (357)
T ss_pred hCCCCeEEccCCC---CC--CCCCHHHHHHHHHHHh----hCCCCcccCCHHHHHHHHHHHHH-hcCCCCCCcCeE--EE
Confidence 5688899999995 33 3557788888766542 45799999999999999999965 54443 667776 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++++.+++.++. +.|||+|++++|+|+.|...++..|+ +++.++ +++ .+.. .++.+++.
T Consensus 86 t~G~~~~i~~~~~~l~-~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~v~---------~~~----~l~~--~~~~~v~~ 148 (357)
T TIGR03539 86 VIGTKELVAWLPTLLG-LGPGDTVVIPELAYPTYEVGALLAGA-TPVAAD---------DPT----ELDP--VGPDLIWL 148 (357)
T ss_pred ccChHHHHHHHHHHHc-CCCCCEEEECCCCcHHHHHHHHhcCC-EEeccC---------Chh----hcCc--cCccEEEE
Confidence 9999999998877552 47999999999999999999999998 777662 111 2221 23444555
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|.++|++|+++||.| ++|.++.+++
T Consensus 149 ~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~~ 191 (357)
T TIGR03539 149 NSPGNPTGRVLSVDELRAIVAWARERGAVVASD--ECYLELGWEG 191 (357)
T ss_pred eCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEe--cchhhhccCC
Confidence 689999997 6889999999999999 9999887653
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-21 Score=171.47 Aligned_cols=166 Identities=13% Similarity=0.088 Sum_probs=127.4
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|.++|+|++|. ..+.+++.+.+|..+.... ..+|.+ .|.++||+++++++ + +++++| ++|.
T Consensus 18 ~~~~~i~l~~~~-----~~~~~p~~~~~a~~~~~~~---~~~y~~-~~~~~lr~~ia~~~-~------~~~~~i--~it~ 79 (356)
T PRK08056 18 SPDQLLDFSANI-----NPLGMPVSLKRAIIDNLDC---AERYPD-VEYRHLHQALARHH-Q------VPASWI--LAGN 79 (356)
T ss_pred ChhhEEEecccc-----CCCCCCHHHHHHHHHHHHh---cccCcC-ccHHHHHHHHHHHh-C------cChhhE--EECC
Confidence 367899999995 2256788899887766543 346865 57999999999986 4 455665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ .+|+ +++++|+|+.|..+++..|+ +++.+|+..++.+.+| ..+.+.+. +++.+++.++
T Consensus 80 Ga~~~l~~~~~~l---~~g~-viv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~-~~~~~~~~---~~~k~v~l~~ 150 (356)
T PRK08056 80 GETESIFAVVSGL---KPRR-AMIVTPGFAEYRRALQQVGC-EIRRYSLREADGWQLT-DAILEALT---PDLDCLFLCT 150 (356)
T ss_pred CHHHHHHHHHHHh---CCCC-EEEeCCCcHHHHHHHHHcCC-eEEEEecccccCCCcc-HHHHHhcc---CCCCEEEEeC
Confidence 9999999888764 5775 78889999999999999999 9999988533334445 23444443 3344555689
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. +|+++|++++++||+| ++|.++.+++
T Consensus 151 p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~~ 191 (356)
T PRK08056 151 PNNPTGLLPERQLLQAIAERCKSLNIALILD--EAFIDFIPDE 191 (356)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHhcCCEEEEe--cchhccCCcc
Confidence 9999997 6788899999999999 9999998765
|
|
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=169.77 Aligned_cols=163 Identities=10% Similarity=0.026 Sum_probs=124.2
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
|...|.++|+|++|+ .++++++.++++..+.+.. +..+.|.+ .|.++||+++++++.. .+ +++++| +
T Consensus 14 ~~~~~~~~i~l~~~~-----~~~~~p~~~~~~~~~~~~~-~~~~~Y~~-~~~~~Lr~aia~~~~~-~~---~~~~~i--~ 80 (335)
T PRK14808 14 YETEKRDRTYLALNE-----NPFPFPEDLVDEVFRRLNS-DTLRIYYD-SPDEELIEKILSYLDT-DF---LSKNNV--S 80 (335)
T ss_pred CCCCCCceeEecCCC-----CCCCCCHHHHHHHHHHhhh-hhhhcCCC-CChHHHHHHHHHHhCC-CC---CCcceE--E
Confidence 456778999999994 3467788899887765533 22344755 4999999999999965 43 556765 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
+|.|+++++.++++++ |+|++++|+|+.|..+++..|+ +++.+|+. . .+.++.. .+. + +.+++
T Consensus 81 it~Ga~~~i~~~~~~~------d~v~v~~P~y~~~~~~~~~~g~-~~~~v~~~-~-~~~~~~~----~~~---~-~~~i~ 143 (335)
T PRK14808 81 VGNGADEIIYVMMLMF------DRSVFFPPTYSCYRIFAKAVGA-KFLEVPLT-K-DLRIPEV----NVG---E-GDVVF 143 (335)
T ss_pred EcCCHHHHHHHHHHHh------CcEEECCCCHHHHHHHHHHcCC-eEEEecCC-C-cCCCChh----Hcc---C-CCEEE
Confidence 9999999999988754 7899999999999999999999 99999873 2 2333322 121 2 34555
Q ss_pred cccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 162 HACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 162 ~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+++||||||. ++.+++ +++++||+| |+|.+|..
T Consensus 144 i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~D--E~Y~~f~~ 181 (335)
T PRK14808 144 IPNPNNPTGHVFEREEIERIL-KTGAFVALD--EAYYEFHG 181 (335)
T ss_pred EeCCCCCCCCCcCHHHHHHHH-hcCCEEEEE--CchhhhcC
Confidence 6899999998 677777 589999999 99999853
|
|
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.5e-22 Score=175.50 Aligned_cols=173 Identities=13% Similarity=0.048 Sum_probs=123.7
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC---CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD---SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..+|||+.|. ++..+.+.+.++++.++++.+. ....+|.+..|.++||+++++++.. ..+..+++++| ++|
T Consensus 30 ~~~i~l~~g~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~-~~g~~v~~~~I--~it 103 (416)
T PRK09440 30 PGAIMLGGGN---PAHIPEMEDYFRDLLADLLASGKLTEALGNYDGPQGKDELIEALAALLNE-RYGWNISPQNI--ALT 103 (416)
T ss_pred CCceeccCCC---CCccCCHHHHHHHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHH-HhCCCCChhhE--EEc
Confidence 4579999996 3322233456777777665431 1235799999999999999999965 44444777876 599
Q ss_pred ccChhHHHHHHHHHHHhc-----CCCeEEe-cCCCchhHHHHHHHhCCC---cceeEeccCCc--CccccHHHHHHHHhc
Q psy6266 84 LSGTGALRVGAEFLHRIL-----NYTTFYY-SKPTWENHRLVFLNAGFT---EAREYRYWNPE--KRAVDFTGMYEDLVN 152 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-----~gd~V~i-~~P~y~~y~~~~~~~g~~---~~~~~~~~~~~--~~~~d~~~~~~~l~~ 152 (218)
.|+++|+.++++++ ++ +||+|++ ++|+|+.|.......+.. .+..++. ..+ .+++|++.++ +
T Consensus 104 ~Ga~~al~~~~~~l--~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~l~--~-- 176 (416)
T PRK09440 104 NGSQSAFFYLFNLF--AGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELL-PEGQFKYHVDFEHLH--I-- 176 (416)
T ss_pred cChHHHHHHHHHHH--hccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccc-cccccccCCCHHHcc--c--
Confidence 99999999999877 43 5899999 699999998755433310 2222333 122 2457777775 2
Q ss_pred CCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 153 APDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.++..+++.++||||||. +|+++|++++++||+| ++|..+
T Consensus 177 -~~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~D--e~Y~~~ 224 (416)
T PRK09440 177 -DEDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPLLID--NAYGPP 224 (416)
T ss_pred -CCCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEe--CCcccc
Confidence 234456666899999998 7889999999999999 999754
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=169.32 Aligned_cols=163 Identities=11% Similarity=0.061 Sum_probs=124.7
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+|||+.|. ++ +.+++.++++..+... ...+|.+. |.++||+++++++ + +++++| ++|.|++
T Consensus 23 ~~i~l~~~~----n~-~~~~~~~~~a~~~~~~---~~~~Y~~~-~~~~Lr~aia~~~-~------v~~~~I--~it~G~~ 84 (360)
T PRK07392 23 AILDFSASI----NP-LGPPESVIAAIQSALS---ALRHYPDP-DYRELRLALAQHH-Q------LPPEWI--LPGNGAA 84 (360)
T ss_pred cEEEeCCcC----CC-CCCCHHHHHHHHHHHH---HhhcCCCc-CHHHHHHHHHHHh-C------cChhhE--EECCCHH
Confidence 679999995 33 5678888888776653 24679775 5689999999988 4 456665 5999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCc---cccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKR---AVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~---~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++.++++++ .+||+|++++|+|+.|...++..|+ +++.+++...... ..+++.+.+.. +++.++++++
T Consensus 85 ~~i~~~~~~l---~~g~~vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~n 156 (360)
T PRK07392 85 ELLTWAGREL---AQLRAVYLITPAFGDYRRALRAFGA-TVKELPLPLDQPSPGLTLRLQTLPPQL----TPNDGLLLNN 156 (360)
T ss_pred HHHHHHHHHh---CCCCeEEEECCCcHHHHHHHHHcCC-eEEEEecccccCCcccccCHHHHHHhc----cCCCEEEEeC
Confidence 9999988765 3789999999999999999999999 9999987432221 13455544322 2345566679
Q ss_pred CCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. +|.+++++++++|+ | |+|.++.++.
T Consensus 157 P~NPTG~~~~~~~l~~l~~~~~~~Ii-D--E~y~~~~~~~ 193 (360)
T PRK07392 157 PHNPTGKLWSREAILPLLEQFALVVV-D--EAFMDFLPPD 193 (360)
T ss_pred CCCCCCCCcCHHHHHHHHHHCCEEEE-E--CchhhhccCc
Confidence 9999998 79999999987555 9 9999998753
|
|
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.1e-21 Score=169.30 Aligned_cols=163 Identities=16% Similarity=0.143 Sum_probs=129.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+|+|+.|.+ .+.+++.+++|..+..+. ..|.|..|.++||+++++++ + +++++| ++|.|++
T Consensus 30 ~~i~l~~n~~-----~~~~~~~v~~a~~~~~~~----~~~~p~~g~~~lr~~ia~~~-~------~~~~~i--~~t~G~~ 91 (359)
T PRK03158 30 KIVKLASNEN-----PYGPSPKVKEAIAAHLDE----LALYPDGYAPELRTKVAKHL-G------VDEEQL--LFGAGLD 91 (359)
T ss_pred ceEEecCCCC-----CCCCCHHHHHHHHHHHHH----hhcCCCCcHHHHHHHHHHHh-C------CCHHHE--EECCCHH
Confidence 6899999963 234577899888776632 45778899999999999987 3 344665 5999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++.++++++ +++||+|++++|+|+.|...+...|+ +++.+|+. .+++|++.+++.+.. +..+++.++|||
T Consensus 92 ~~l~~~~~~~--~~~gd~v~~~~p~y~~~~~~~~~~g~-~~~~~~~~---~~~~d~~~l~~~~~~---~~~~v~i~~p~N 162 (359)
T PRK03158 92 EVIQMISRAL--LNPGTNTVMAEPTFSQYRHNAIIEGA-EVREVPLK---DGGHDLEAMLKAIDE---QTKIVWICNPNN 162 (359)
T ss_pred HHHHHHHHHH--hCCCCEEEEcCCCHHHHHHHHHHcCC-eEEEEecC---CCCcCHHHHHHhcCC---CCCEEEEeCCCC
Confidence 9999988876 67999999999999999999999999 89999874 356899998877742 333444478999
Q ss_pred CcHH-----HHHHHhhc--CeEEEeeCCceeeccCCCCC
Q psy6266 168 PTAQ-----QVAHMVDK--HHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 168 PTG~-----~l~~l~~~--~~i~ii~D~r~~y~~l~~~n 199 (218)
|||. ++.++++. ++++||.| ++|.++.+++
T Consensus 163 PtG~~~~~~~l~~~~~~~~~~~~ii~D--e~y~~~~~~~ 199 (359)
T PRK03158 163 PTGTYVNHEELLSFLESVPSHVLVVLD--EAYYEYVTAE 199 (359)
T ss_pred CCCCCCCHHHHHHHHHhCCCCcEEEEE--CchHhhcCCc
Confidence 9998 56666654 69999999 9999988753
|
|
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=169.70 Aligned_cols=171 Identities=15% Similarity=0.110 Sum_probs=135.5
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.+..+|+|+.|. ..+++++.+.+|+.+...+ .....|.+..|.++||+++++++ + .++++| ++|.
T Consensus 26 ~~~~~i~l~~~~-----~~~~~~~~~~~a~~~~~~~-~~~~~y~~~~g~~~lr~~ia~~l-~------~~~~~v--~~~~ 90 (380)
T PRK06225 26 KDKEMIWMGQNT-----NHLGPHEEVREAMIRCIEE-GEYCKYPPPEGFPELRELILKDL-G------LDDDEA--LITA 90 (380)
T ss_pred hcCCeEEccCCC-----CCCCCCHHHHHHHHHHHhc-CCCCCCCCCcchHHHHHHHHHhc-C------CCCCcE--EEeC
Confidence 456789999984 3456788899988877754 33467999999999999999986 3 334554 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC-cCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP-EKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
|+++++.++++++ +.+||+|++++|+|..|...++..|+ +++.+++... +.+.+|++.+++.+.. ++.+++.+
T Consensus 91 g~t~al~~~~~~~--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~~~l~~~~~~---~~~~v~l~ 164 (380)
T PRK06225 91 GATESLYLVMRAF--LSPGDNAVTPDPGYLIIDNFASRFGA-EVIEVPIYSEECNYKLTPELVKENMDE---NTRLIYLI 164 (380)
T ss_pred CHHHHHHHHHHHh--cCCCCEEEEcCCCCcchHHHHHHhCc-eEEeeccccccCCccCCHHHHHhhcCC---CceEEEEe
Confidence 9999999999876 67899999999999999988999999 8988886422 2356899998887753 34444445
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|+++++++|.| ++|.++..+
T Consensus 165 ~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~ 205 (380)
T PRK06225 165 DPLNPLGSSYTEEEIKEFAEIARDNDAFLLHD--CTYRDFARE 205 (380)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEe--hhHHHHhcc
Confidence 89999997 6888899999999999 998766443
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3e-21 Score=168.53 Aligned_cols=163 Identities=13% Similarity=0.058 Sum_probs=125.6
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
+++||+.|.. + ..+++.+++++.+... ...+|.+ .|.++||+++++++ + +++++| ++|.|++
T Consensus 20 ~~~~l~~~~~--~---~~~p~~~~~a~~~~~~---~~~~Y~~-~~~~~lr~~ia~~~-~------~~~~~i--~it~Ga~ 81 (354)
T PRK06358 20 MILDFSANIN--P---LGVPESLKQAITENLD---KLVEYPD-PDYLELRKRIASFE-Q------LDLENV--ILGNGAT 81 (354)
T ss_pred ceEEecCCCC--C---CCCCHHHHHHHHHHHH---hhhcCCC-ccHHHHHHHHHHHh-C------CChhhE--EECCCHH
Confidence 4799999952 2 2347888888777653 2456854 57999999999987 4 456776 5999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++.++++++ . +++|++++|+|+.|...++..|+ +++.+++..++.+.+| +.+++.+.. +..+++.++|||
T Consensus 82 ~~l~~~~~~~---~-~~~v~i~~P~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d-~~~~~~~~~---~~~~v~~~~P~N 152 (354)
T PRK06358 82 ELIFNIVKVT---K-PKKVLILAPTFAEYERALKAFDA-EIEYAELTEETNFAAN-EIVLEEIKE---EIDLVFLCNPNN 152 (354)
T ss_pred HHHHHHHHHh---C-CCcEEEecCChHHHHHHHHHcCC-eeEEEeCccccCCCcc-HHHHHhhcc---CCCEEEEeCCCC
Confidence 9999988764 3 47899999999999999999999 8999987433345677 555555532 334444468999
Q ss_pred CcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 168 PTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 168 PTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
|||. +|.++|++++++||+| ++|.++.+++
T Consensus 153 PtG~~~~~~~~~~l~~~a~~~~~~ii~D--e~Y~~~~~~~ 190 (354)
T PRK06358 153 PTGQLISKEEMKKILDKCEKRNIYLIID--EAFMDFLEEN 190 (354)
T ss_pred CCCCccCHHHHHHHHHHHHhcCCEEEEe--CcccccCCCc
Confidence 9997 6888899999999999 9999998874
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-21 Score=168.48 Aligned_cols=165 Identities=12% Similarity=0.046 Sum_probs=128.3
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
+|+.+|+|+.|. ..+.+++.++++..... ..+.|. ..|.++||+++++++ + +++++| ++|.
T Consensus 50 ~~~~~i~l~~n~-----~p~~~~~~v~~a~~~~~----~~~~Yp-~~~~~~lr~~ia~~~-~------~~~~~I--~~t~ 110 (380)
T PLN03026 50 KPEDIVKLDANE-----NPYGPPPEVLEALGNMK----FPYVYP-DPESRRLRAALAEDS-G------LESENI--LVGC 110 (380)
T ss_pred CccceEEccCCC-----CCCCCCHHHHHHHHhhH----hhccCC-CCCHHHHHHHHHHHh-C------cChhhE--EEcC
Confidence 367899999995 22456677888765421 234574 468999999999986 3 445665 5899
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.+++.++ ++|||+|++++|+|+.|...++..|+ +++.++.. +.+.+|++.+++.+.. +++.+++.++
T Consensus 111 Ga~~~i~~~~~~~--~~~gd~Vlv~~P~y~~y~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~~~~--~~~~~v~l~~ 183 (380)
T PLN03026 111 GADELIDLLMRCV--LDPGDKIIDCPPTFGMYVFDAAVNGA-EVIKVPRT--PDFSLDVPRIVEAVET--HKPKLLFLTS 183 (380)
T ss_pred CHHHHHHHHHHHh--cCCCCEEEEcCCChHHHHHHHHHcCC-EEEEeecC--CCCCcCHHHHHHHHhc--cCCcEEEEeC
Confidence 9999999998876 67999999999999999999999999 89898872 3467899999888742 2334444468
Q ss_pred CCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. ++.++++.. +++|.| ++|.+|.+.
T Consensus 184 P~NPTG~~~~~~~l~~l~~~~-~~vi~D--eaY~~~~~~ 219 (380)
T PLN03026 184 PNNPDGSIISDDDLLKILELP-ILVVLD--EAYIEFSTQ 219 (380)
T ss_pred CCCCCCCCCCHHHHHHHHhcC-CEEEEE--CcchhhcCC
Confidence 9999998 677887654 999999 999998765
|
|
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.6e-21 Score=164.28 Aligned_cols=163 Identities=10% Similarity=0.074 Sum_probs=125.3
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|..+|+|+.|.. .+++++.+.++..+...+ ....+|. ..|.++||+++++++ + +++++| ++|.|
T Consensus 17 ~~~~i~l~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~Y~-~~g~~~lr~~ia~~~-~------~~~~~I--~~t~G 80 (337)
T PRK03967 17 GNYRIWLDKNEN-----PFDLPEELKEEIFEELKR-VPFNRYP-HITSDPLREAIAEFY-G------LDAENI--AVGNG 80 (337)
T ss_pred CCceEEecCCCC-----CCCCCHHHHHHHHHHhhc-CccccCC-CCCHHHHHHHHHHHh-C------cCcceE--EEcCC
Confidence 346799999952 245677888887766533 2356785 579999999999987 3 455665 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.+++.++ +||+|++++|+|+.|..+++..|+ +++.+++. +.+++|++.+++.+. +..+++.++|
T Consensus 81 ~~~~l~~~~~~~----~gd~V~v~~P~y~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~~~----~~~~v~~~~P 149 (337)
T PRK03967 81 SDELISYLVKLF----EGKHIVITPPTFGMYSFYAKLNGI-PVIDVPLK--EDFTIDGERIAEKAK----NASAVFICSP 149 (337)
T ss_pred HHHHHHHHHHHh----CCCeEEEeCCChHHHHHHHHHcCC-eEEEeecC--CCCCcCHHHHHHhcc----CCCEEEEeCC
Confidence 999998776543 799999999999999999999999 89999873 236788888876542 2234445799
Q ss_pred CCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. ++.+++ ++++++|+| ++|.++...
T Consensus 150 ~NPtG~~~~~~~l~~i~-~~~~~ii~D--e~y~~~~~~ 184 (337)
T PRK03967 150 NNPTGNLQPEEEILKVL-ETGKPVVLD--EAYAEFSGK 184 (337)
T ss_pred CCCCCCCCCHHHHHHHH-hcCCEEEEE--Cchhhhccc
Confidence 999997 677777 479999999 999988644
|
|
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-21 Score=167.12 Aligned_cols=165 Identities=14% Similarity=0.073 Sum_probs=126.9
Q ss_pred CCCce-eeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIH-CCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~-i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|..+ |+|++|. ..+.+++.+.+|..+... ...+|.+. +.++||+++++++ + +++++| ++|
T Consensus 29 ~g~~~~~~l~~~~-----~~~~~~~~~~~a~~~~~~---~~~~Y~~~-~~~~Lr~~ia~~~-~------~~~~~I--~it 90 (369)
T PRK08153 29 RGRPFRARIGANE-----SGFGPSPSVIAAMREAAA---EIWKYGDP-ENHDLRHALAAHH-G------VAPENI--MVG 90 (369)
T ss_pred cCCcceeEecCCC-----CCCCCCHHHHHHHHHHHH---HhhcCCCC-ccHHHHHHHHHHh-C------CCHHHE--EEc
Confidence 45544 6999995 235778889988776553 23568876 5899999999987 3 455665 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ ++|||.|++++|+|+.|...++..|+ +++.+|+. . ...|++.+.+.+.. .+..+++.+
T Consensus 91 ~G~~~~l~~~~~~~--~~~gd~vlv~~p~y~~~~~~~~~~g~-~~~~vp~~-~--~~~~~~~l~~~~~~--~~~~~i~l~ 162 (369)
T PRK08153 91 EGIDGLLGLIVRLY--VEPGDPVVTSLGAYPTFNYHVAGFGG-RLVTVPYR-D--DREDLDALLDAARR--ENAPLVYLA 162 (369)
T ss_pred CCHHHHHHHHHHHh--cCCCCEEEECCCcchHHHHHHHHcCC-eEEEeeCC-C--CCCCHHHHHHHhcc--cCCcEEEEe
Confidence 99999999998876 67999999999999999999999999 89999872 2 25788888776643 233344447
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. ++.+.++ ++++||.| |+|..+.++
T Consensus 163 ~P~NPtG~~~~~~~l~~l~~~~~-~~~~lI~D--E~y~~~~~~ 202 (369)
T PRK08153 163 NPDNPMGSWHPAADIVAFIEALP-ETTLLVLD--EAYCETAPA 202 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHhCC-CCcEEEEe--CchhhhcCc
Confidence 89999997 4455544 48999999 999998765
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.4e-21 Score=167.75 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=128.7
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
++.+|||+.|.. + ..+++.+++++.+... ...+|.+..| .+||+++++++ + .++++| ++|.|
T Consensus 35 ~~~~i~l~~~~~--~---~~~~~~~~~al~~~~~---~~~~Y~~~~g-~~lr~~ia~~~-~------~~~~~i--~~t~G 96 (371)
T PRK05166 35 VPRIAKLGSNEN--P---LGPSPAVRRAFADIAE---LLRLYPDPQG-RALREAIAART-G------VPADRI--ILGNG 96 (371)
T ss_pred CcceEEcCCCCC--C---CCCCHHHHHHHHHHHH---HhhcCCCCcH-HHHHHHHHHHh-C------cCHHHE--EEcCC
Confidence 568899999962 1 3457788888776543 2457999999 49999999876 3 345665 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.++++++ +++||+|++++|+|+.|...++..|+ +++.+++. +.+++|++.+++.+.. ++.+++.++|
T Consensus 97 ~~~~l~~~~~~~--~~~gd~vli~~P~y~~~~~~~~~~g~-~~~~v~~~--~~~~~~~~~l~~~~~~---~~~~v~l~~p 168 (371)
T PRK05166 97 SEDLIAVICRAV--LRPGDRVVTLYPSFPLHEDYPTMMGA-RVERVTVT--PDLGFDLDALCAAVAR---APRMLMFSNP 168 (371)
T ss_pred HHHHHHHHHHHh--cCCCCEEEEcCCChHHHHHHHHHcCC-eEEEeecC--CCCCCCHHHHHHhhhc---CCCEEEEeCC
Confidence 999999988876 67999999999999999999999999 89998873 2367899999888753 2334445899
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|+++++ ++++||.| ++|..+.++
T Consensus 169 ~NPtG~~~~~~~~~~l~~~~~-~~~~ii~D--e~y~~~~~~ 206 (371)
T PRK05166 169 SNPVGSWLTADQLARVLDATP-PETLIVVD--EAYAEYAAG 206 (371)
T ss_pred CCCCCCCCCHHHHHHHHHhCC-CCcEEEEE--CcHHHhcCC
Confidence 999997 3444443 47899999 999998865
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-21 Score=167.31 Aligned_cols=162 Identities=16% Similarity=0.099 Sum_probs=125.1
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.++|+|+.|. ..+++++.+.+|+.+...+ ...|.+. +.++||+++++++ + +++++| ++|.|+
T Consensus 43 ~~~i~l~~~~-----~~~~~~~~~~~a~~~~~~~---~~~Y~~~-~~~~Lr~aia~~~-~------v~~e~I--~it~Gs 104 (370)
T PRK09105 43 EGAVFLNANE-----CPLGPSPAARDAAARSAAL---SGRYDLE-LEDDLRTLFAAQE-G------LPADHV--MAYAGS 104 (370)
T ss_pred CCcEEecCCC-----CCCCCCHHHHHHHHHHHHH---hcCCCCc-hHHHHHHHHHHHh-C------cChhhE--EEcCCh
Confidence 3578999995 2356788888887766533 2358765 4999999999875 3 456776 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++++.++++++ +++||+|++++|+|+.|...++..|+ +++.+++. . .+.+|++.+.+.. +++.+++.++||
T Consensus 105 ~~ai~~~~~~l--~~~gd~Vli~~P~y~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~~----~~~~~v~l~nP~ 175 (370)
T PRK09105 105 SEPLNYAVLAF--TSPTAGLVTADPTYEAGWRAADAQGA-PVAKVPLR-A-DGAHDVKAMLAAD----PNAGLIYICNPN 175 (370)
T ss_pred HHHHHHHHHHH--cCCCCEEEEeCCChHHHHHHHHHcCC-eEEEecCC-C-CCCCCHHHHHhcC----CCCCEEEEeCCC
Confidence 99999999877 67999999999999999999999999 89999873 2 4567888886542 234455557899
Q ss_pred CCcHH-----HHHHHhh--cCeEEEeeCCceeeccCCC
Q psy6266 167 NPTAQ-----QVAHMVD--KHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 167 NPTG~-----~l~~l~~--~~~i~ii~D~r~~y~~l~~ 197 (218)
||||. ++.++++ ++++++|.| ++|..+..
T Consensus 176 NPTG~~~~~~~l~~l~~~~~~~~~lIvD--EaY~~f~~ 211 (370)
T PRK09105 176 NPTGTVTPRADIEWLLANKPAGSVLLVD--EAYIHFSD 211 (370)
T ss_pred CCCCcCcCHHHHHHHHHhCCCCcEEEEE--CchHHhcc
Confidence 99998 4555443 358999999 99987754
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-20 Score=164.09 Aligned_cols=164 Identities=11% Similarity=0.053 Sum_probs=129.3
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
..++|+.|. .++++|+.+.+|..+.... ....+|.+. +.++||+++++++ + +++++| ++|.|++
T Consensus 23 ~~~~l~~~~-----~~~~~p~~~~~a~~~~~~~-~~~~~y~~~-~~~~lr~~ia~~~-~------~~~~~i--~it~G~~ 86 (351)
T PRK14807 23 YKYKMDANE-----TPFELPEEVIKNIQEIVKS-SQVNIYPDP-TAEKLREELARYC-S------VVPTNI--FVGNGSD 86 (351)
T ss_pred ceeEccCCC-----CCCCCCHHHHHHHHHHhhc-CcccCCCCc-cHHHHHHHHHHHh-C------CCcccE--EEecCHH
Confidence 457888884 3467788999987776643 245678754 5799999999986 3 445665 5999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++.+++.++ ++|||+|++++|+|+.|...++..|+ +++.++.. +.+++|++.+.+.+... ++.+++.++|||
T Consensus 87 ~~l~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~~~~~--~~k~v~l~~p~N 159 (351)
T PRK14807 87 EIIHLIMLAF--INKGDVVIYPHPSFAMYSVYSKIAGA-VEIPVKLK--EDYTYDVGSFIKVIEKY--QPKLVFLCNPNN 159 (351)
T ss_pred HHHHHHHHHh--cCCCCEEEEeCCChHHHHHHHHHcCC-eEEEeecC--CCCCCCHHHHHHHhhcc--CCCEEEEeCCCC
Confidence 9999998877 68999999999999999999999999 89888773 34678999998888632 333444468999
Q ss_pred CcHH-----HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 168 PTAQ-----QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 168 PTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
|||. ++.+++++++.++|.| ++|.++.
T Consensus 160 PtG~~~~~~~l~~l~~~~~~~~ivD--e~y~~~~ 191 (351)
T PRK14807 160 PTGSVIEREDIIKIIEKSRGIVVVD--EAYFEFY 191 (351)
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEe--Ccchhhc
Confidence 9997 7888888878888899 9998874
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-20 Score=160.88 Aligned_cols=165 Identities=10% Similarity=0.074 Sum_probs=128.7
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
+..+|||++|.+ +.++++.+.+|+.+... ..++|.+..| ++||+++++++. .++++| +.|.|
T Consensus 18 ~~~~i~l~~~~~-----~~~~~~~~~~a~~~~~~---~~~~y~~~~~-~~lr~~ia~~~~-------~~~~~i--~~~~G 79 (346)
T TIGR01141 18 GKEVIKLNSNEN-----PFGPPPKAKEALRAEAD---KLHRYPDPDP-AELKQALADYYG-------VDPEQI--LLGNG 79 (346)
T ss_pred CCceEEccCCCC-----CCCCCHHHHHHHHHhHH---HhhcCCCCCH-HHHHHHHHHHhC-------cChHHE--EEcCC
Confidence 457999999963 35667888888777653 2467887776 999999998873 334555 48999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++..++.++ +++||+|++++|+|+.|..+++..|+ +++.+++. . .+.+|++.+++.+. +++.+++.++|
T Consensus 80 ~~~~l~~~~~~l--~~~gd~v~~~~p~y~~~~~~~~~~g~-~~~~~~~~-~-~~~~d~~~l~~~~~---~~~~~v~l~~p 151 (346)
T TIGR01141 80 SDEIIELLIRAF--LEPGDAVLVPPPTYSMYEISAKIHGA-EVVKVPLD-E-DGQLDLEDILVAID---DKPKLVFLCSP 151 (346)
T ss_pred HHHHHHHHHHHh--cCCCCEEEEcCCCHHHHHHHHHHcCC-eEEEeccC-C-CCCCCHHHHHHhcC---CCCCEEEEeCC
Confidence 999998888776 57999999999999999989999999 89998874 3 35679999988653 34444555689
Q ss_pred CCCcHH-----HHHHHhhcC--eEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ-----QVAHMVDKH--HVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~--~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. ++.++++.+ ++++|.| ++|..+.+.
T Consensus 152 ~NptG~~~~~~~~~~l~~~~~~~~~ii~D--~~y~~~~~~ 189 (346)
T TIGR01141 152 NNPTGNLLSRSDIEAVLERTPEDALVVVD--EAYGEFSGE 189 (346)
T ss_pred CCCCCCCCCHHHHHHHHHhCCCCcEEEEE--CchhhhcCC
Confidence 999997 566666655 9999999 999987664
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.3e-20 Score=160.67 Aligned_cols=164 Identities=16% Similarity=0.149 Sum_probs=128.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+|+|+.|. +.+.+++.+++|+.+.... ...| |..|.++||+++++++. .++++| ++|.|++
T Consensus 23 ~~i~l~~~~-----~~~~~~~~~~~a~~~~~~~---~~~y-~~~g~~~lr~~ia~~~~-------~~~~~I--~~~~G~~ 84 (352)
T PRK03321 23 GAIKLSSNE-----TPFGPLPSVRAAIARAAAG---VNRY-PDMGAVELRAALAEHLG-------VPPEHV--AVGCGSV 84 (352)
T ss_pred cceeccCCC-----CCCCCCHHHHHHHHHHHHh---cCcC-CCCcHHHHHHHHHHHhC-------cCHHHE--EECCCHH
Confidence 578999995 2344677899988776642 3457 56899999999999872 345565 4899999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++.+++.++ +.|||+|+++.|+|+.|...++..|+ +++.+++. + ..++|++.+++.+.. +.+.+++ ++|||
T Consensus 85 ~~l~~~~~~~--~~~gd~Vli~~p~y~~~~~~~~~~g~-~~~~v~~~-~-~~~~~~~~l~~~~~~--~~~~v~l-~~p~N 156 (352)
T PRK03321 85 ALCQQLVQAT--AGPGDEVIFAWRSFEAYPILVQVAGA-TPVQVPLT-P-DHTHDLDAMAAAITD--RTRLIFV-CNPNN 156 (352)
T ss_pred HHHHHHHHHh--cCCCCEEEeCCCCHHHHHHHHHHcCC-EEEEccCC-C-CCCCCHHHHHHhhcc--CCCEEEE-eCCCC
Confidence 9999888766 67999999999999999999999999 89998873 2 357899999887753 2234444 58999
Q ss_pred CcHH-----HHHHHhhc--CeEEEeeCCceeeccCCCCC
Q psy6266 168 PTAQ-----QVAHMVDK--HHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 168 PTG~-----~l~~l~~~--~~i~ii~D~r~~y~~l~~~n 199 (218)
|||. ++.+++++ ++++||.| ++|.++.++.
T Consensus 157 PtG~~~~~~~l~~l~~~~~~~~~ii~D--e~y~~~~~~~ 193 (352)
T PRK03321 157 PTGTVVTPAELARFLDAVPADVLVVLD--EAYVEYVRDD 193 (352)
T ss_pred CcCCCcCHHHHHHHHHhCCCCeEEEEe--chHHHhccCc
Confidence 9997 67777765 69999999 9999988764
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.7e-20 Score=159.08 Aligned_cols=164 Identities=11% Similarity=0.081 Sum_probs=127.7
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE-ec
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ-TL 84 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~-t~ 84 (218)
++.+|||++|. ..+.+++.+++++.+.... .+.|.+..+ ++||+++++++ + .+++++ ++ |.
T Consensus 33 ~~~~i~l~~~~-----~~~~~~~~~~~~~~~~~~~---~~~y~~~~~-~~lr~~ia~~~-~------~~~~~i--~~~~~ 94 (361)
T PRK00950 33 PESIIKLGSNE-----NPLGPSPKAVEAIEKELSK---IHRYPEPDA-PELREALSKYT-G------VPVENI--IVGGD 94 (361)
T ss_pred ccceEEccCCC-----CCCCCCHHHHHHHHHHHHh---hcCCCCCCH-HHHHHHHHHHh-C------CCHHHE--EEeCC
Confidence 44789999995 2244677788877665532 456876655 99999999986 3 345565 36 78
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ +.|||+|++++|+|+.|...++..|+ +++.++. .+.+.+|++.+++.+.. ++.+++.++
T Consensus 95 Ga~~~i~~~~~~~--~~~gd~vlv~~p~y~~~~~~~~~~g~-~~~~~~~--~~~~~~~~~~l~~~~~~---~~~~v~~~~ 166 (361)
T PRK00950 95 GMDEVIDTLMRTF--IDPGDEVIIPTPTFSYYEISAKAHGA-KPVYAKR--EEDFSLDVDSVLNAITE---KTKVIFLCT 166 (361)
T ss_pred CHHHHHHHHHHHh--cCCCCEEEEcCCChHHHHHHHHHcCC-EEEEeec--CCCCCcCHHHHHHHhcc---CCCEEEEeC
Confidence 8999998888766 57999999999999999999999999 8888874 33457899999887742 333444468
Q ss_pred CCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 165 AHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
||||||. ++.++++++++++|.| ++|.++..
T Consensus 167 p~nptG~~~~~~~l~~l~~~~~~~li~D--e~y~~~~~ 202 (361)
T PRK00950 167 PNNPTGNLIPEEDIRKILESTDALVFVD--EAYVEFAE 202 (361)
T ss_pred CCCCCCCCcCHHHHHHHHHHCCcEEEEE--CchhhhCc
Confidence 9999998 7899999999999999 99988763
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=155.68 Aligned_cols=151 Identities=13% Similarity=0.047 Sum_probs=115.2
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
+.+|+|+.|. ++ .+|+.+++|+.++.. ..++|.. ...||+++++++. ++| ++|.|+
T Consensus 8 ~~~i~l~~~~----np--~~p~~~~~a~~~~~~---~~~~yp~---~~~l~~~ia~~~~----------~~I--~vt~G~ 63 (311)
T PRK08354 8 EGLIDFSASV----NP--YPPEWLDEMFERAKE---ISGRYTY---YEWLEEEFSKLFG----------EPI--VITAGI 63 (311)
T ss_pred cceeEecCCC----CC--CCCHHHHHHHHHHHH---HhhcCCC---hHHHHHHHHHHHC----------CCE--EECCCH
Confidence 3689999995 32 235788888776653 2446754 4679999998762 134 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++++.+++.++ .+||+|++++|+|+.|..+++..|+ +++.+ .+|++.+++.+. +... ++.++||
T Consensus 64 ~~al~~~~~~~---~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~~--------~~d~~~l~~~~~---~~~~-vi~~~P~ 127 (311)
T PRK08354 64 TEALYLIGILA---LRDRKVIIPRHTYGEYERVARFFAA-RIIKG--------PNDPEKLEELVE---RNSV-VFFCNPN 127 (311)
T ss_pred HHHHHHHHHhh---CCCCeEEEeCCCcHHHHHHHHHcCC-EEeec--------CCCHHHHHHhhc---CCCE-EEEecCC
Confidence 99999877543 4899999999999999999999998 77654 246777776664 2234 4447899
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||. +|.++|+++++++|+| ++|.++.+++
T Consensus 128 NPTG~~~~~~~l~~l~~~a~~~~~~li~D--e~y~~f~~~~ 166 (311)
T PRK08354 128 NPDGKFYNFKELKPLLDAVEDRNALLILD--EAFIDFVKKP 166 (311)
T ss_pred CCCCCccCHHHHHHHHHHhhhcCcEEEEe--Ccchhccccc
Confidence 99997 6788889999999999 9999998763
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-19 Score=157.22 Aligned_cols=166 Identities=14% Similarity=0.107 Sum_probs=127.9
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.. + ..+++.++++..+.... ..+|.+..| ++||+++++++ + .++++| ++|.
T Consensus 30 ~~~~~i~l~~~~~--~---~~~~~~~~~a~~~~~~~---~~~y~~~~~-~~lr~~ia~~~-~------~~~~~i--~~t~ 91 (367)
T PRK02731 30 GIADIIKLASNEN--P---LGPSPKAIEAIRAAADE---LHRYPDGSG-FELKAALAEKF-G------VDPERI--ILGN 91 (367)
T ss_pred CCCceEEecCCCC--C---CCCCHHHHHHHHHHHHh---hcCCCCCcH-HHHHHHHHHHh-C------cCHHHE--EEcC
Confidence 3567899999952 1 23467788887776632 456876654 79999999986 3 344565 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ +++||+|++++|+|+.|...++..|+ +++.++. +.+++|++.+++.+.. ++.+++.++
T Consensus 92 G~~~~l~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~~~~---~~~~~~~~~l~~~~~~---~~~~v~l~~ 162 (367)
T PRK02731 92 GSDEILELLARAY--LGPGDEVIYSEHGFAVYPIAAQAVGA-KPVEVPA---KDYGHDLDAMLAAVTP---RTRLVFIAN 162 (367)
T ss_pred CHHHHHHHHHHHh--cCCCCEEEEecCCHHHHHHHHHHcCC-eEEEecc---cCCCCCHHHHHHHhCC---CCcEEEEeC
Confidence 9999999888876 67899999999999999988899999 8888876 2467899999888852 334444579
Q ss_pred CCCCcHH-----HHHHHhhc--CeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ-----QVAHMVDK--HHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~--~~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. ++.++++. +++++|.| ++|..+.++.
T Consensus 163 p~nptG~~~~~~~l~~l~~~~~~~~~li~D--e~y~~~~~~~ 202 (367)
T PRK02731 163 PNNPTGTYLPAEEVERFLAGVPPDVLVVLD--EAYAEYVRRK 202 (367)
T ss_pred CCCCCCcCCCHHHHHHHHHhCCCCcEEEEE--CcHHHhccCc
Confidence 9999998 56666654 48999999 9999887653
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-19 Score=154.47 Aligned_cols=158 Identities=13% Similarity=0.048 Sum_probs=122.3
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
+..+|||++|. ..+.+++.+++++.+...+ ...|.+..|.++||+++++++ + +++++| ++|.|
T Consensus 21 ~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~---~~~Y~~~~g~~~lr~aia~~~-~------~~~~~I--~it~G 83 (349)
T PRK07908 21 GPGLLDFAVNV-----RHDTPPEWLRERLAARLGD---LAAYPSTEDERRARAAVAARH-G------RTPDEV--LLLAG 83 (349)
T ss_pred CCCeEEecCCC-----CCCCCCHHHHHHHHHHhhH---hhcCCCccchHHHHHHHHHHh-C------cChhhE--EECCC
Confidence 56899999995 2356788899988876643 457999999999999999986 3 456666 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.++++ + .| +.++++.|+|+.|...++..|+ +++.+++. . .+.+|++.+ . ++..+++.++|
T Consensus 84 a~~al~~~~~-l---~~-~~viv~~P~y~~~~~~~~~~G~-~i~~v~~~-~-~~~~d~~~l----~---~~~~~i~l~np 148 (349)
T PRK07908 84 AAEGFALLAR-L---RP-RRAAVVHPSFTEPEAALRAAGI-PVHRVVLD-P-PFRLDPAAV----P---DDADLVVIGNP 148 (349)
T ss_pred HHHHHHHHHh-c---CC-CeEEEeCCCChHHHHHHHHcCC-EEEeeccC-c-ccCcChhHh----c---cCCCEEEEcCC
Confidence 9999998876 3 46 5677899999999999999999 99999873 2 256677633 2 23335555899
Q ss_pred CCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.+++++ +.++|.| ++|..+..+
T Consensus 149 ~NPTG~~~~~~~l~~l~~~-~~~iIvD--e~y~~~~~~ 183 (349)
T PRK07908 149 TNPTSVLHPAEQLLALRRP-GRILVVD--EAFADAVPG 183 (349)
T ss_pred CCCCCCCcCHHHHHHHHhc-CCEEEEE--CcchhhccC
Confidence 999997 78888865 6778889 999887544
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.5e-19 Score=156.84 Aligned_cols=164 Identities=12% Similarity=0.030 Sum_probs=125.4
Q ss_pred CCCceeeeeeeEEeCCCCCccCc---hHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVL---PVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~---~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
.|..+|+|..|.. --++.++ ..+.++..+++.. +...|+++.|+++||+++++++.. +. ++
T Consensus 9 ~g~n~~~l~~~~v---~iDlltds~t~ams~~~~~a~~~--gd~~Y~~~~g~~~Leeaia~~~g~---------~~--vv 72 (431)
T cd00617 9 AGYNVFLLRSEDV---YIDLLTDSGTGAMSDYQWAAMML--GDEAYAGSKSFYDLEDAVQDLFGF---------KH--II 72 (431)
T ss_pred cCCCEEeCCCCCc---CCCCCCCCCcHHHHHHHHHHHHh--CCCccCCCCCHHHHHHHHHHHHCC---------Ce--EE
Confidence 5778889988852 2234444 3555544444433 345699999999999999998743 22 46
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc--------CccccHHHHHHHHhcC
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE--------KRAVDFTGMYEDLVNA 153 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~--------~~~~d~~~~~~~l~~~ 153 (218)
.|.||++|+.++++++ ++|||+| +++|+|+.|...+...|+ +++.++..... .+.+|++.+++.+.+.
T Consensus 73 ~t~~Gt~Al~la~~al--~~pGD~V-~~~~~f~~~~~~i~~~Ga-~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~ 148 (431)
T cd00617 73 PTHQGRGAENILFSIL--LKPGRTV-PSNMHFDTTRGHIEANGA-VPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV 148 (431)
T ss_pred EcCCHHHHHHHHHHHh--CCCCCEE-ccCCcccchHHHHHhCCC-EeEEEecccccccccccCCCCCcCHHHHHHHhCcc
Confidence 9999999999999887 7899988 799999999999999999 99999884221 1348999999999753
Q ss_pred -CCCcEEEEcccCCCCc-HH--------HHHHHhhcCeEEEeeCC
Q psy6266 154 -PDNSVIILHACAHNPT-AQ--------QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 154 -~~~~~iil~~~p~NPT-G~--------~l~~l~~~~~i~ii~D~ 188 (218)
.++..+++.++||||| |. +|.++|++|+|+||+|+
T Consensus 149 ~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~Da 193 (431)
T cd00617 149 GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDA 193 (431)
T ss_pred cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 2234556667999999 54 67899999999999995
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >KOG0258|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=148.20 Aligned_cols=180 Identities=12% Similarity=0.088 Sum_probs=139.9
Q ss_pred chHHHHHHHHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCe
Q psy6266 27 LPVVRQAEKELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTT 105 (218)
Q Consensus 27 ~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~ 105 (218)
.+.+++|. +++++ .+..-.|+.++|++-.|+.+|++..+ +++...+++.| ..|.|++.|+..++.++.. .+.+-
T Consensus 89 ~Dai~RA~-~~L~~~gGs~GaYS~SqGv~~vR~~VA~~I~r-RDG~p~~p~dI--~LT~GAS~ai~~il~l~~~-~~~~G 163 (475)
T KOG0258|consen 89 TDAIKRAK-RILNDCGGSLGAYSDSQGVPGVRKHVAEFIER-RDGIPADPEDI--FLTTGASPAIRSILSLLIA-GKKTG 163 (475)
T ss_pred HHHHHHHH-HHHHhcCCcccccccccCChhHHHHHHHHHHh-ccCCCCCHHHe--eecCCCcHHHHHHHHHHhc-CCCCc
Confidence 44555554 44444 33455799999999999999999988 88766677876 5999999999999887743 57899
Q ss_pred EEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCC--CcEEEEcccCCCCcHH--------HHHH
Q psy6266 106 FYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD--NSVIILHACAHNPTAQ--------QVAH 175 (218)
Q Consensus 106 V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~--~~~iil~~~p~NPTG~--------~l~~ 175 (218)
|++|-|.||-|.+.+...|+ ..+.|-+.+++.|.+|++.+++.+.++.+ +..++++.+|.||||. +|..
T Consensus 164 vliPiPQYPLYsAti~l~~~-~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~ 242 (475)
T KOG0258|consen 164 VLIPIPQYPLYSATISLLGG-TQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIIC 242 (475)
T ss_pred eEeecCCCchhHHHHHHhCC-cccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHH
Confidence 99999999999999999999 77777776667789999999988876521 1233333469999998 6889
Q ss_pred HhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHHcCC
Q psy6266 176 MVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSIP 215 (218)
Q Consensus 176 l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~~~~ 215 (218)
+|.+++++++.| |+|.+-.|.+-- ==+++++++.+.+
T Consensus 243 fa~~~~l~llaD--EVYQ~Nvy~~~s-kFhSfKKvl~emg 279 (475)
T KOG0258|consen 243 FAAEEGLVLLAD--EVYQDNVYTTGS-KFHSFKKVLHEMG 279 (475)
T ss_pred HHHHcCeEEech--HHHHhhccCCCc-chHhHHHHHHHhc
Confidence 999999999999 999987666422 2256666665443
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-18 Score=151.17 Aligned_cols=162 Identities=10% Similarity=0.056 Sum_probs=129.3
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+++|+... ++ +.+++.++++.++.++ ..++|... ...+||+++++++.. .++++| +++.|++
T Consensus 23 ~~i~LssNe----nP-~gp~~~~~~~~~~~~~---~~~rYPd~-~~~~l~~a~a~~~~~------~~~~~V--~~gnGsd 85 (356)
T COG0079 23 GIIKLSSNE----NP-YGPPPKVIEAIRAALD---KLNRYPDP-DYRELRAALAEYYGV------VDPENV--LVGNGSD 85 (356)
T ss_pred cceeecCCC----CC-CCCCHHHHHHHHHHHH---hhccCCCC-cHHHHHHHHHHHhCC------CCcceE--EEcCChH
Confidence 478888884 33 4456888887777663 36778766 889999999998753 445655 5899999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+.+.++.+++ +.|||+|+++.|+|+.|...++..|+ +++.+++. + +.+|++.+.+.+.+ +..+++.++|||
T Consensus 86 e~i~~l~~~~--~~~gd~vl~~~Ptf~~Y~~~a~~~g~-~~~~v~~~--~-~~~d~~~~~~~~~~---~~~lv~i~nPNN 156 (356)
T COG0079 86 ELIELLVRAF--VEPGDTVLIPEPTFSMYEIAAQLAGA-EVVKVPLK--E-FRLDLDAILAAIRD---KTKLVFLCNPNN 156 (356)
T ss_pred HHHHHHHHHh--hcCCCEEEEcCCChHHHHHHHHhcCC-eEEEeccc--c-cccCHHHHHHhhhc---CCCEEEEeCCCC
Confidence 9999999987 67999999999999999999999999 99999873 2 78899999988864 334555578999
Q ss_pred CcHH-----HHHHHhhc--CeEEEeeCCceeeccCCC
Q psy6266 168 PTAQ-----QVAHMVDK--HHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 168 PTG~-----~l~~l~~~--~~i~ii~D~r~~y~~l~~ 197 (218)
|||. +|.++++. .+.++|-| |+|.+|..
T Consensus 157 PTG~~~~~~~l~~l~~~~~~~~~vVvD--EAY~eF~~ 191 (356)
T COG0079 157 PTGTLLPREELRALLEALPEGGLVVID--EAYIEFSP 191 (356)
T ss_pred CCCCCCCHHHHHHHHHhCCCCcEEEEe--CchhhcCC
Confidence 9998 55555543 28899999 99999877
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-18 Score=147.42 Aligned_cols=157 Identities=8% Similarity=0.043 Sum_probs=115.8
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|+..|+|+.+. .+ ..+++.+ . . ...++|.+. +.++||+++++++ + +++++| ++|.|
T Consensus 30 ~~~~~~l~~ne----~~-~~~~~~~-----~-~---~~~~~Yp~~-~~~~Lr~aia~~~-~------~~~~~I--~it~G 85 (354)
T PRK04635 30 GRGDIWINANE----SP-FNNEYKL-----D-L---ARLNRYPEC-QPPELINAYSAYA-G------VAPEQI--LTSRG 85 (354)
T ss_pred CCCcEEeeCCC----CC-CCCChhh-----h-h---HHhccCCCC-CHHHHHHHHHHHh-C------cCHHHE--EEeCC
Confidence 44568999985 22 2233322 1 1 124568776 6899999999875 4 566776 59999
Q ss_pred ChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 86 GTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++++.++++++ +.|| |+|++++|+|+.|...++..|+ +++.+|+. +.+.+|++.++ .+ +++.+++.++
T Consensus 86 s~~~i~~~~~~~--~~~g~d~vlv~~P~y~~y~~~~~~~g~-~v~~v~~~--~~~~~~~~~l~-~~----~~~~li~i~n 155 (354)
T PRK04635 86 ADEAIELLIRAF--CEPGQDSIACFGPTYGMYAISAETFNV-GVKALPLT--ADYQLPLDYIE-QL----DGAKLVFICN 155 (354)
T ss_pred HHHHHHHHHHHh--cCCCCCeEEEcCCChHHHHHHHHHcCC-EEEEEecC--CCCCCCHHHHH-hc----cCCCEEEEeC
Confidence 999999999877 5688 9999999999999999999999 99999873 24567887775 23 2344455579
Q ss_pred CCCCcHH-----HHHHHhhc-CeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ-----QVAHMVDK-HHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~-~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. ++.++++. ++++||.| ++|..+...
T Consensus 156 P~NPTG~~~~~~~l~~l~~~~~~~~vivD--eay~~~~~~ 193 (354)
T PRK04635 156 PNNPTGTVIDRADIEQLIEMTPDAIVVVD--EAYIEFCPE 193 (354)
T ss_pred CCCCCCccCCHHHHHHHHHhCCCcEEEEe--CchHhhccC
Confidence 9999998 55666543 35999999 999987643
|
|
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-17 Score=144.33 Aligned_cols=134 Identities=10% Similarity=0.160 Sum_probs=104.1
Q ss_pred CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHHHHHH
Q psy6266 44 NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 44 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~~~~ 122 (218)
..+|... -..+||+++++++ + +++++| ++|.|+++++.++++++ +.+| |+|++++|+|+.|...++.
T Consensus 51 ~~~Yp~~-~~~~l~~~~a~~~-g------~~~~~I--~~~~Gs~e~i~~~~~~~--~~~g~~~vli~~P~y~~y~~~~~~ 118 (351)
T PRK01688 51 LNRYPEC-QPKAVIENYAAYA-G------VKPEQV--LVSRGADEGIELLIRAF--CEPGKDAILYCPPTYGMYSVSAET 118 (351)
T ss_pred cccCCCC-ChHHHHHHHHHHh-C------CCHHHE--EEcCCHHHHHHHHHHHh--cCCCCCEEEEcCCCHHHHHHHHHH
Confidence 4568554 3589999999874 4 556776 59999999999999876 5787 9999999999999999999
Q ss_pred hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhc--CeEEEeeCCceeeccC
Q psy6266 123 AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDK--HHVYLLRSGRINMCGL 195 (218)
Q Consensus 123 ~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~--~~i~ii~D~r~~y~~l 195 (218)
.|+ +++.+++. + .+.+|++.+.+.+. ++.+++.++||||||. ++.++++. .+.+||.| |+|.+|
T Consensus 119 ~G~-~~~~v~~~-~-~~~~d~~~l~~~~~----~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivD--Eay~~f 189 (351)
T PRK01688 119 IGV-EIRTVPTL-D-NWQLDLPAIADNLD----GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVAD--EAYIEF 189 (351)
T ss_pred cCC-EEEEeecC-C-CCCCCHHHHHHhcc----CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEE--Cchhhc
Confidence 999 89999873 3 47889999988762 2334445799999998 44444432 26789999 999988
Q ss_pred CCC
Q psy6266 196 TTQ 198 (218)
Q Consensus 196 ~~~ 198 (218)
...
T Consensus 190 ~~~ 192 (351)
T PRK01688 190 CPQ 192 (351)
T ss_pred CCC
Confidence 743
|
|
| >KOG0256|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-17 Score=142.20 Aligned_cols=149 Identities=14% Similarity=0.096 Sum_probs=120.0
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCC-CCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGG-DASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA 123 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~-~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~ 123 (218)
..|.+..|+++||+++|+++-.. .+...++++++ ++|.|++.|...++-.| .+|||..++|.|+||....-++.-
T Consensus 115 a~fqdy~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~--Vv~~G~T~ane~l~fcL--adpgdafLvPtPyY~gfdrdl~~r 190 (471)
T KOG0256|consen 115 AMFQDYHGLPSFRQAVAEFMERARGNRVKFDPERV--VVTNGATSANETLMFCL--ADPGDAFLVPTPYYPGFDRDLRWR 190 (471)
T ss_pred hhcccccCchHHHHHHHHHHHHHhCCCCccCccce--EEecccchhhHHHHHHh--cCCCceeeecCCCCCcccccceec
Confidence 46999999999999999998221 33345788986 59999999999887766 689999999999999987655543
Q ss_pred -CCCcceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCcee
Q psy6266 124 -GFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRIN 191 (218)
Q Consensus 124 -g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~ 191 (218)
|. +++++.+..++.+.++.+++++++.++ ..+-.-+++.+|+||-|. .+.+++++++|-+|+| |+
T Consensus 191 Tgv-eivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~D--EI 267 (471)
T KOG0256|consen 191 TGV-EIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISD--EI 267 (471)
T ss_pred cCc-eEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEee--hh
Confidence 66 888888887777888999999998764 122233444679999997 5788999999999999 99
Q ss_pred eccCCCCCH
Q psy6266 192 MCGLTTQNL 200 (218)
Q Consensus 192 y~~l~~~ni 200 (218)
|++=+|+.-
T Consensus 268 ya~sVF~~~ 276 (471)
T KOG0256|consen 268 YAGSVFDKS 276 (471)
T ss_pred hcccccCcc
Confidence 999888854
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-17 Score=141.98 Aligned_cols=138 Identities=9% Similarity=0.095 Sum_probs=104.6
Q ss_pred CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHHHHHH
Q psy6266 44 NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 44 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~~~~ 122 (218)
..+|... +.++||+++++++ + +++++| ++|.|+++++.++++++ +.+| |.|++++|+|+.|...++.
T Consensus 53 ~~~Y~~~-~~~~lr~~ia~~~-~------~~~~~I--~~t~G~~~~l~~~~~~~--~~~g~~~vlv~~p~y~~~~~~~~~ 120 (364)
T PRK04781 53 TRRYPDP-QPPGLRSALAALY-G------CAPEQL--LIGRGSDEAIDLLVRAL--CVPGRDAVLVTPPVFGMYAVCARL 120 (364)
T ss_pred hccCCCC-CHHHHHHHHHHHh-C------cChHHE--EEeCCHHHHHHHHHHHh--cCCCCCeEEEcCCChHHHHHHHHH
Confidence 3458655 4799999999886 3 445665 59999999999999877 5788 8999999999999998899
Q ss_pred hCCCcceeEeccCC-cCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhh--cCeEEEeeCCceeecc
Q psy6266 123 AGFTEAREYRYWNP-EKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVD--KHHVYLLRSGRINMCG 194 (218)
Q Consensus 123 ~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~--~~~i~ii~D~r~~y~~ 194 (218)
.|+ +++.+|+... +.+.+|++.+.+.+.. +++.+++.++||||||. ++.++++ +++++||.| ++|.+
T Consensus 121 ~g~-~~~~v~~~~~~~~~~~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~D--eay~~ 195 (364)
T PRK04781 121 QNA-PLVEVPLVDGADGFHADVPAIVAAALA--SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVD--EAYGE 195 (364)
T ss_pred cCC-EEEEEecCCCccCCCcCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEe--Ccchh
Confidence 999 9999987422 2345688887665533 23444444689999998 4444443 247899999 99999
Q ss_pred CCCC
Q psy6266 195 LTTQ 198 (218)
Q Consensus 195 l~~~ 198 (218)
|.+.
T Consensus 196 f~~~ 199 (364)
T PRK04781 196 FSDV 199 (364)
T ss_pred hcCC
Confidence 8764
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=139.07 Aligned_cols=160 Identities=13% Similarity=0.009 Sum_probs=124.7
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCC---Cc----HHHHHHHHHHhcCCCCCCCcCCCc
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVL---GL----ESFSSAATRMLLGGDASPPLREGR 77 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~---G~----~~lr~aia~~~~~~~~~~~~~~~~ 77 (218)
.|.++|||+.|.|- | +.+++.++++..+..++ ....|+++. |. .+||+++++++.. ++
T Consensus 36 ~g~~~i~~~~~~~l---g-~~~~~~v~~~~~~~~~~--~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~---------~~ 100 (393)
T TIGR01822 36 DGREVLNFCANNYL---G-LSSHPDLIQAAKDALDE--HGFGMSSVRFICGTQDIHKELEAKIAAFLGT---------ED 100 (393)
T ss_pred CCceEEEeeCCCcc---c-cCCCHHHHHHHHHHHHH--hCCCCCCcCcccCChHHHHHHHHHHHHHhCC---------Cc
Confidence 68899999999752 2 45677888887776654 224688887 97 8999999988743 22
Q ss_pred eEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC---C
Q psy6266 78 AFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---P 154 (218)
Q Consensus 78 v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~ 154 (218)
+ +++.|+++|+..++.++ ++|||+|++++|.|+++...++..++ +++.++ ..|++.+++.+++. .
T Consensus 101 ~--ii~~~~~~a~~~~~~~l--~~~gd~vi~~~~~~~s~~~~~~~~~~-~~~~~~-------~~d~~~l~~~i~~~~~~~ 168 (393)
T TIGR01822 101 T--ILYASCFDANGGLFETL--LGAEDAIISDALNHASIIDGVRLCKA-KRYRYA-------NNDMADLEAQLKEARAAG 168 (393)
T ss_pred E--EEECchHHHHHHHHHHh--CCCCCEEEEeccccHHHHHHHHhcCC-ceEEeC-------CCCHHHHHHHHHhhhhcC
Confidence 2 57789999999888776 68999999999999999998888887 664432 35788888888642 1
Q ss_pred CCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 155 DNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 155 ~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.++++++....+||||. +|.++|++|++++|.| ++|.
T Consensus 169 ~~~~~v~~~~v~~~tG~~~~l~~i~~la~~~~~~li~D--e~~~ 210 (393)
T TIGR01822 169 ARHRLIATDGVFSMDGVIAPLDEICDLADKYDALVMVD--ECHA 210 (393)
T ss_pred CCceEEEEeCCccCCCCcCCHHHHHHHHHHcCCEEEEE--CCcc
Confidence 25666666778999997 8999999999999999 8884
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.6e-17 Score=139.89 Aligned_cols=143 Identities=12% Similarity=0.079 Sum_probs=102.0
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
+++|+|+.+. .+.+ ++++.+.+ ... ..|.. |..+||+++++++.. ++| ++|.|+
T Consensus 20 ~~~i~l~~ne--~p~~--~~~~~~~~---~~~------~~yp~--~~~~Lr~~ia~~~~~---------~~I--~it~Gs 73 (330)
T PRK05664 20 ADWLDLSTGI--APWP--WPVPAIPA---DAW------ARLPE--TDDGLEAAARAYYGA---------PQL--LPVAGS 73 (330)
T ss_pred HHheeecCCc--CCCC--CCCcccCH---HHH------HhCCC--ChHHHHHHHHHHhCC---------CCE--EECcCH
Confidence 3578999996 2333 22222322 111 23643 448999999998731 344 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++++.+++. +.|||+|++++|+|+.|...++..|+ +++.++.. .+.+.+. ++.+++.++||
T Consensus 74 ~~al~~~~~----~~~gd~v~v~~P~y~~~~~~~~~~g~-~~~~v~~~----------~~~~~~~----~~~~v~l~nP~ 134 (330)
T PRK05664 74 QAAIQALPR----LRAPGRVGVLSPCYAEHAHAWRRAGH-QVRELDEA----------EVEAALD----SLDVLVVVNPN 134 (330)
T ss_pred HHHHHHHHH----ccCCCEEEEcCCChHHHHHHHHHcCC-eEEEechh----------hHhhhhc----CCCEEEEeCCc
Confidence 999998753 46999999999999999999999999 89888641 2333342 12234446899
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
||||. +|++++++++++||+| |+|.++.
T Consensus 135 NPTG~~~s~~~l~~l~~~~~~~~~~iI~D--E~y~~~~ 170 (330)
T PRK05664 135 NPTGRRFDPARLLAWHARLAARGGWLVVD--EAFMDNT 170 (330)
T ss_pred CCCCCccCHHHHHHHHHHHHhcCCEEEEE--CCcccCC
Confidence 99998 5777788999999999 9998765
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=138.59 Aligned_cols=129 Identities=9% Similarity=0.073 Sum_probs=98.4
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhC
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAG 124 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g 124 (218)
.+| |..-..+||+++++++. +.+++| ++|.|+++++.+++++ ++|| +|++++|+|+.|..+++..|
T Consensus 35 ~~Y-p~~~~~~lr~~ia~~~~-------~~~~~I--~it~Gs~~~l~~~~~~---~~~~-~vv~~~P~y~~y~~~~~~~G 100 (332)
T PRK06425 35 SIY-PEISYTDIEDQIKIYTQ-------GLKIKV--LIGPGLTHFIYRLLSY---INVG-NIIIVEPNFNEYKGYAFTHG 100 (332)
T ss_pred ccC-cCcCHHHHHHHHHHHhC-------CCcceE--EECCCHHHHHHHHHHH---hCCC-cEEEeCCChHHHHHHHHHcC
Confidence 457 44457999999998863 334554 6999999999998863 4576 57788999999999999999
Q ss_pred CCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 125 FTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+ +++.+|+. . .++|.+.+ ++. +.+.+++ ++||||||. +|+++|++++++||+| |+|.++.
T Consensus 101 ~-~v~~vp~~-~--~~~~~~~l----~~~-~~k~v~l-~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~D--E~Y~~~~ 168 (332)
T PRK06425 101 I-RISALPFN-L--INNNPEIL----NNY-NFDLIFI-VSPDNPLGNLISRDSLLTISEICRKKGALLFID--EAFIDFV 168 (332)
T ss_pred C-eEEEEeCC-c--ccCcHHHH----hhc-CCCEEEE-eCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEe--cchhccc
Confidence 9 99999873 2 23454333 221 2234444 589999998 6888889999999999 9999998
Q ss_pred CCC
Q psy6266 197 TQN 199 (218)
Q Consensus 197 ~~n 199 (218)
++.
T Consensus 169 ~~~ 171 (332)
T PRK06425 169 PNR 171 (332)
T ss_pred ccc
Confidence 764
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.4e-16 Score=135.78 Aligned_cols=171 Identities=8% Similarity=-0.045 Sum_probs=125.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|.++|||+.|.+ ..+.+++.++++..+..++ ......|.+..|.+++|+++++++.. ..+. ++. +++
T Consensus 30 ~~g~~~id~~~~~~----~g~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~-~~g~---~~~--i~~ 99 (385)
T TIGR01825 30 VNGKEVINLSSNNY----LGFADHPRLKEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAK-FKKT---EAA--LVF 99 (385)
T ss_pred ECCceEEEeeccCc----cCCCCCHHHHHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHH-HhCC---CcE--EEE
Confidence 46889999999853 2355677888877666543 11234688899999999999999864 3221 222 356
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCCcEEEE
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDNSVIIL 161 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~iil 161 (218)
|.| +++..+++.++ ++|||+|++++|+|+++...++..|+ ++..++ .+|++.+++.+.+. .+++.+++
T Consensus 100 ~sG-~~a~~~a~~~~--~~~gd~vi~~~~~~~~~~~~~~~~g~-~~~~~~-------~~d~~~l~~~l~~~~~~~~~~v~ 168 (385)
T TIGR01825 100 QSG-FNTNQGVLSAL--LRKGDIVLSDELNHASIIDGLRLTKA-TKKIYK-------HADMDDLDRVLRENPSYGKKLIV 168 (385)
T ss_pred CcH-HHHHHHHHHHh--CCCCCEEEEEccccHHHHHHHHhcCC-ceEEeC-------CCCHHHHHHHHHhhccCCCeEEE
Confidence 666 55666666655 68999999999999999888888887 665542 35777777777643 23566777
Q ss_pred cccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 162 HACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 162 ~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
.+..+||||. +|.++|++|++++|.| ++|..+.+
T Consensus 169 ~~~v~~~tG~~~~~~~i~~l~~~~~~~li~D--e~~~~~~~ 207 (385)
T TIGR01825 169 TDGVFSMDGDVAPLPEIVELAERYGAVTYVD--DAHGSGVM 207 (385)
T ss_pred EecCCcCCCCccCHHHHHHHHHHhCCEEEEE--CcccccCc
Confidence 7788999996 8999999999999999 99976544
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=136.14 Aligned_cols=151 Identities=18% Similarity=0.130 Sum_probs=112.5
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.++.+|+|+.|.. +.+ ++ +.+ ... ...++|.+..| ++||+++++++ + .++++| ++|.
T Consensus 15 ~~~~~~~~~~~~~--~~~----~~-~~~---~~~---~~~~~y~~~~~-~~lr~~la~~~-~------~~~~~i--~~t~ 71 (330)
T TIGR01140 15 PPEDWLDFSTGIN--PLG----PP-VPP---IPA---SAWARYPDPEY-DELRAAAAAYY-G------LPAASV--LPVN 71 (330)
T ss_pred ChhheeEccccCC--CCC----CC-hhh---cch---HHHhhCCCccH-HHHHHHHHHHh-C------CChhhE--EECC
Confidence 3567899999962 222 12 221 111 13467877776 99999999986 3 345665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.+++.++ .+| .|++++|+|..|..+++..|. +++.++ |++.+++.+.+ .+. ++.++
T Consensus 72 G~~~~i~~~~~~l---~~g-~vl~~~p~y~~~~~~~~~~g~-~~~~~~---------d~~~l~~~~~~---~~~-v~i~~ 133 (330)
T TIGR01140 72 GAQEAIYLLPRLL---APG-RVLVLAPTYSEYARAWRAAGH-EVVELP---------DLDRLPAALEE---LDV-LVLCN 133 (330)
T ss_pred CHHHHHHHHHHHh---CCC-eEEEeCCCcHHHHHHHHHcCC-EEEEeC---------CHHHHHhhccc---CCE-EEEeC
Confidence 9999999976553 577 699999999999999999998 787774 66777776632 233 44478
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|+++|++|+++||.| ++|.++.++
T Consensus 134 p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~D--e~y~~~~~~ 173 (330)
T TIGR01140 134 PNNPTGRLIPPETLLALAARLRARGGWLVVD--EAFIDFTPD 173 (330)
T ss_pred CCCCCCCCCCHHHHHHHHHHhHhcCCEEEEE--CcccccCCc
Confidence 9999997 6788889999999999 999988765
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.6e-16 Score=136.33 Aligned_cols=165 Identities=12% Similarity=-0.010 Sum_probs=122.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccC---cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEY---LPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y---~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
..|.++|||+.|.| ..+.+++.+.++.++..++ ....| ....|.+++|+++++++.. ..+. +++ +
T Consensus 39 ~~g~~~i~l~~~~~----~~~~~~~~i~~a~~~~~~~--~~~~~~~~~~~~G~~~l~~~l~~~la~-~~g~---~~~--i 106 (397)
T PRK06939 39 ADGKEVINFCANNY----LGLANHPELIAAAKAALDS--HGFGMASVRFICGTQDLHKELEEKLAK-FLGT---EDA--I 106 (397)
T ss_pred cCCCeEEEeeccCc----cccCCCHHHHHHHHHHHHH--cCCCCcccccccCCcHHHHHHHHHHHH-HhCC---CcE--E
Confidence 46899999999964 2345788888887776643 12234 3357999999988888754 3321 233 3
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC---CCCc
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNS 157 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~ 157 (218)
++|.| ++++..+++++ ++|||+|++++|+|+++...++..|+ +++.++. .|++.+++.+++. ..++
T Consensus 107 ~~tsG-~~a~~~~~~~l--~~~gd~vi~~~~~~~~~~~~~~~~~~-~~~~~~~-------~d~~~l~~~i~~~~~~~~~~ 175 (397)
T PRK06939 107 LYSSC-FDANGGLFETL--LGKEDAIISDALNHASIIDGVRLCKA-KRYRYAN-------NDMADLEAQLKEAKEAGARH 175 (397)
T ss_pred EEcCh-HHHHHHHHHHh--CCCCCEEEEEhhhhHHHHHHHHhcCC-ceEEeCC-------CCHHHHHHHHHhhhccCCCC
Confidence 46666 77887777766 78999999999999999999999998 7776643 3677777777542 1255
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++++....+||||. +|.++|++|+++||+| ++|+
T Consensus 176 ~~v~~~~v~~~~G~~~~~~~l~~la~~~~~~li~D--e~~~ 214 (397)
T PRK06939 176 KLIATDGVFSMDGDIAPLPEICDLADKYDALVMVD--DSHA 214 (397)
T ss_pred eEEEEecCcCCCCCcCCHHHHHHHHHHhCCEEEEE--Cccc
Confidence 66665567899996 8999999999999999 9995
|
|
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.1e-15 Score=127.76 Aligned_cols=170 Identities=16% Similarity=0.061 Sum_probs=120.2
Q ss_pred eeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhH
Q psy6266 10 CCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGA 89 (218)
Q Consensus 10 i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~a 89 (218)
|||+.|.+ .+.+++.+..+..+.... .....|.+..|+.+|++++++++.. ..+.....++ +++|.|++++
T Consensus 1 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~~~~~~--~~~~~~~t~a 71 (350)
T cd00609 1 IDLSIGEP-----DFPPPPEVLEALAAAALR-AGLLGYYPDPGLPELREAIAEWLGR-RGGVDVPPEE--IVVTNGAQEA 71 (350)
T ss_pred CCCCCCCC-----CCCCCHHHHHHHHHHhhc-cCCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCcce--EEEecCcHHH
Confidence 58888964 344555555554432211 2456799999999999999999865 4332122333 4689999999
Q ss_pred HHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccH--HHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 90 LRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDF--TGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 90 l~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~--~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+..++.++ ..+||+|++++|+|+++..+++..|. +++.++... ....+. +.+.... .++..+++..+++|
T Consensus 72 ~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~-~~~~i~~~~--~~~~~~~~~~~~~~~---~~~~~~v~i~~~~~ 143 (350)
T cd00609 72 LSLLLRAL--LNPGDEVLVPDPTYPGYEAAARLAGA-EVVPVPLDE--EGGFLLDLELLEAAK---TPKTKLLYLNNPNN 143 (350)
T ss_pred HHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHCCC-EEEEEeccc--ccCCccCHHHHHhhc---CccceEEEEECCCC
Confidence 99988877 56899999999999999999999998 899998742 223332 3333322 23333344445999
Q ss_pred CcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 168 PTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 168 PTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||. +|.++|+++++++|.| ++|.++.+.
T Consensus 144 ~tG~~~~~~~l~~l~~~~~~~~~~~ivD--~a~~~~~~~ 180 (350)
T cd00609 144 PTGAVLSEEELEELAELAKKHGILIISD--EAYAELVYD 180 (350)
T ss_pred CCCcccCHHHHHHHHHHHHhCCeEEEEe--cchhhceeC
Confidence 9998 4558999999999999 888876543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.1e-14 Score=124.40 Aligned_cols=167 Identities=13% Similarity=-0.040 Sum_probs=116.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCC----cHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLG----LESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
..|..+|||+.|. +-| ++.++.|+++.++.+++ ......|....| ..+||+++++++.. ++.
T Consensus 13 ~~g~~~id~~~~~---~~g-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~--------~~~- 79 (360)
T TIGR00858 13 RDGRRLLNFSSND---YLG-LASHPEVIQAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGT--------EAA- 79 (360)
T ss_pred ECCceEEecccCC---ccc-CCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCC--------CCE-
Confidence 5799999999994 223 45577788887776643 111112322334 45588888877521 232
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC-CCc
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP-DNS 157 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~ 157 (218)
++.|.| ++++..+++++ +.|||+|++++|+|+.+...++..|+ +++.++. +|++.+++.+++.. +++
T Consensus 80 -i~~~~G-~~~~~~~l~~~--~~~gd~v~~~~~~~~~~~~~~~~~g~-~~~~~~~-------~d~~~l~~~~~~~~~~~~ 147 (360)
T TIGR00858 80 -LLFSSG-YLANVGVISAL--VGKGDLILSDALNHASLIDGCRLSGA-RVRRYRH-------NDVEHLERLLEKNRGERR 147 (360)
T ss_pred -EEECch-HHHHHHHHHHh--CCCCCEEEEEccccHHHHHHHHhcCC-ceEEecC-------CCHHHHHHHHHHcccCCC
Confidence 345666 45544455554 57999999999999999999999998 7776643 47788888776532 345
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
.+++..+++||||. +|.++|+++++++|.| ++|....+
T Consensus 148 ~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~li~D--e~~~~~~~ 190 (360)
T TIGR00858 148 KLIVTDGVFSMDGDIAPLPQLVALAERYGAWLMVD--DAHGTGVL 190 (360)
T ss_pred eEEEEeCCccCCCCCcCHHHHHHHHHHcCcEEEEE--CcccccCc
Confidence 66666788999995 7999999999999999 89875433
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >KOG0634|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.1e-15 Score=127.61 Aligned_cols=146 Identities=14% Similarity=0.039 Sum_probs=118.5
Q ss_pred CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH
Q psy6266 43 LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 43 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~ 122 (218)
...+|.++.|+++|+..+.++..-..+.+ ...+ .-+++|.|.+.+++.+++.+ +|+||.|++..++|++.....+.
T Consensus 92 ~alQYg~s~G~peLl~fik~h~~~~ih~p-~~~~-wdiiit~G~t~~l~~~l~~~--~N~gd~vlie~~ty~~AL~s~~a 167 (472)
T KOG0634|consen 92 RALQYGQSSGIPELLLFIKDHNRPTIHAP-PYKN-WDIIITNGNTDGLFKVLRTL--INRGDHVLIEEYTYPSALQSMEA 167 (472)
T ss_pred hhhccccccCcHHHHHHHHHhccccccCC-CCCC-ceEEEecCCchHHHHHHHHh--hcCCCceEEecccchHHHHhccc
Confidence 34689999999999999998764102222 2222 33579999999999999987 79999999999999999999999
Q ss_pred hCCCcceeEeccCCcCccccHHHHHHHHhcCC------C-CcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeC
Q psy6266 123 AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP------D-NSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 123 ~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~------~-~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D 187 (218)
.|+ +++.+++ +..+++.+.+++.+.+.. + ..+++.+++.|||||. +|.+||++|++.||+|
T Consensus 168 ~gv-~~ipv~m---d~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeD 243 (472)
T KOG0634|consen 168 LGV-KIIPVKM---DQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVED 243 (472)
T ss_pred cCc-eEEeccc---cCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEec
Confidence 998 8888876 345899999998886531 1 2467888999999997 7999999999999999
Q ss_pred CceeeccCCCC
Q psy6266 188 GRINMCGLTTQ 198 (218)
Q Consensus 188 ~r~~y~~l~~~ 198 (218)
+.|.-|.+.
T Consensus 244 --dpYy~Lq~~ 252 (472)
T KOG0634|consen 244 --DPYYFLQMN 252 (472)
T ss_pred --Cccceeecc
Confidence 888866655
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=127.01 Aligned_cols=156 Identities=13% Similarity=0.009 Sum_probs=113.7
Q ss_pred CCccCchHHHHHHHHHhhcCCCCccCcCC-------CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHH
Q psy6266 22 CKPWVLPVVRQAEKELAADDSLNHEYLPV-------LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGA 94 (218)
Q Consensus 22 ~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-------~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~ 94 (218)
+--+.|+.|.+|..+..+.......+.+. ..++++|+++++++.. . ++++| +.|.|+++++.+++
T Consensus 24 ~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~-~-----~~~~i--~~t~g~t~~l~~~~ 95 (398)
T TIGR03392 24 ATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNA-P-----DAENI--VWTRGTTESINLVA 95 (398)
T ss_pred cccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhCC-C-----CCCeE--EEeCChHHHHHHHH
Confidence 33367888999887766431122223332 2356799999987632 1 23554 58999999999998
Q ss_pred HHHH--HhcCCCeEEecCCCchh----HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCC
Q psy6266 95 EFLH--RILNYTTFYYSKPTWEN----HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNP 168 (218)
Q Consensus 95 ~~l~--~l~~gd~V~i~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NP 168 (218)
+++. .+.+||+|++++|.|++ +....+..|+ +++.++.. . .+.+|++.+++.+. +++.++..+.+|||
T Consensus 96 ~~~~~~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~-~v~~v~~~-~-~~~~~~~~l~~~i~---~~t~lv~i~~~~n~ 169 (398)
T TIGR03392 96 QSYARPRLQPGDEIIVSEAEHHANLIPWLMVAQQTGA-KVVKLPIG-A-DLLPDIRQLPELLT---PRTRILALGQMSNV 169 (398)
T ss_pred HHhhhccCCCCCEEEECCcchhHHHHHHHHHHHHcCc-EEEEEecC-C-CCCcCHHHHHHHhc---cCceEEEEECcccc
Confidence 8763 14689999999999876 4455677898 89998873 2 35678999988885 34556666789999
Q ss_pred cHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 169 TAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 169 TG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
||. +|.++|++++++++.| ++|.
T Consensus 170 tG~~~~~~~i~~~~~~~~~~~ivD--~a~~ 197 (398)
T TIGR03392 170 TGGCPDLARAITLAHQYGAVVVVD--GAQG 197 (398)
T ss_pred ccccCCHHHHHHHHHHcCCEEEEE--hhhh
Confidence 998 7899999999999999 7875
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=128.50 Aligned_cols=162 Identities=14% Similarity=0.084 Sum_probs=116.1
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC-----CCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP-----VLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~-----~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
+..+++|++|.+ ++++|+.+.++..++ . ..+.|++ +.|.+++|+++++++.. ..+ .+.+++.
T Consensus 19 ~~~~~~l~~g~~-----~~~~p~~~~~~~~~~--~--~~~~~~~~~~~~~~g~~~~~~~~~~~la~-~~g--~~~~~v~- 85 (398)
T cd00613 19 DQSMSFLGSGTY-----KHNPPAVIKRNILEN--E--FYTAYTPYQPEISQGRLQALFELQTMLCE-LTG--MDVANAS- 85 (398)
T ss_pred ccCccccccccc-----CCcCcHHHHHHhccc--c--CcccCCCCChhhhhhHHHHHHHHHHHHHH-HHC--CCcccee-
Confidence 456799999953 357788888766655 2 2456777 89999999999998854 332 2223442
Q ss_pred EEec-cChhHHHHHHHHHHHhcC--CCeEEecCCCchhHHHHHHHhC----CCcceeEeccCCcCccccHHHHHHHHhcC
Q psy6266 81 VQTL-SGTGALRVGAEFLHRILN--YTTFYYSKPTWENHRLVFLNAG----FTEAREYRYWNPEKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 81 ~~t~-G~~~al~~~~~~l~~l~~--gd~V~i~~P~y~~y~~~~~~~g----~~~~~~~~~~~~~~~~~d~~~~~~~l~~~ 153 (218)
++. |++++...+..++ +++ ||+|++++|.|+.|...+...| + +++.++.. +.+.+|++.+++.+.
T Consensus 86 -~~~~g~~~~~~~~~~~~--~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~i~-- 157 (398)
T cd00613 86 -LQDEATAAAEAAGLAAI--RAYHKRNKVLVPDSAHPTNPAVARTRGEPLGI-EVVEVPSD--EGGTVDLEALKEEVS-- 157 (398)
T ss_pred -ccCchHHHHHHHHHHHH--hcccCCCEEEEcCccCcchHHHHHHhcccCCc-EEEEeccC--CCCCcCHHHHHHhcC--
Confidence 444 5555544444443 455 9999999999999999988888 8 78888762 234678888888774
Q ss_pred CCCcEEEEcccCCCCcHH------HHHHHhhcCeEEEeeCCceee
Q psy6266 154 PDNSVIILHACAHNPTAQ------QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~------~l~~l~~~~~i~ii~D~r~~y 192 (218)
+++.+++.++| ||||. +|.++|++|++++|.| +++
T Consensus 158 -~~t~~viv~~~-~~~G~~~~~l~~i~~la~~~g~~livD--~~~ 198 (398)
T cd00613 158 -EEVAALMVQYP-NTLGVFEDLIKEIADIAHSAGALVYVD--GDN 198 (398)
T ss_pred -CCeEEEEEECC-CCCceecchHHHHHHHHHhcCCEEEEE--ecc
Confidence 34555555566 49996 7889999999999999 554
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-15 Score=128.71 Aligned_cols=120 Identities=10% Similarity=0.061 Sum_probs=87.6
Q ss_pred cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCC
Q psy6266 46 EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGF 125 (218)
Q Consensus 46 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~ 125 (218)
+|... - .+||+++++++.- ..+++| ++|.|+++++.++..+ +++|| |++++|+|+.|...++..|+
T Consensus 50 ~Yp~~-~-~~L~~~ia~~~~~------~~~~~I--~i~~Gs~e~i~~l~~~---~~~g~-v~v~~P~y~~y~~~~~~~g~ 115 (339)
T PRK06959 50 RLPED-D-DGLAACAARYYGA------PDAAHV--LPVAGSQAAIRALPAL---LPRGR-VGIAPLAYSEYAPAFARHGH 115 (339)
T ss_pred hCCCc-h-HHHHHHHHHHhCC------CCcccE--EECcCHHHHHHHHHHh---cCCCe-EEEcCCCcHHHHHHHHHCCC
Confidence 47644 3 8999999988732 223565 5999999999876543 46776 88999999999999999999
Q ss_pred CcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 126 TEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+++.++.. . + .+.+ ...+++.++||||||. ++++.++++++++|.| |+|.++.+
T Consensus 116 -~~~~v~~~-~-------~----~~~~---~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~D--Eay~~~~~ 177 (339)
T PRK06959 116 -RVVPLDEA-A-------D----TLPA---ALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVD--EAFADTLP 177 (339)
T ss_pred -EEEeeccc-c-------h----hccc---cCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE--CCCccCCC
Confidence 88877541 1 1 1211 1123445789999998 3445556788999999 99999865
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=123.93 Aligned_cols=158 Identities=12% Similarity=0.036 Sum_probs=108.4
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+|||+-+.. . .+++.+++|+.....+ .....|.|. ..+||+++++++.. . .+ +++.+|+
T Consensus 6 ~~~~~~~~~~-----~-~~~~~~~~a~~~~~~~-~~~~~~~~~--~~~l~~~la~~~~~-~--------~~--~~~~~Gs 65 (353)
T PLN02721 6 RVVDLRSDTV-----T-KPTDAMRAAMANAEVD-DDVLGYDPT--ALRLEEEMAKIFGK-E--------AA--LFVPSGT 65 (353)
T ss_pred hhhhhhcccc-----c-CCCHHHHHHHHhccCC-CcccCCCHH--HHHHHHHHHHHhCC-c--------ee--EEecCcc
Confidence 4678888863 1 3578888887654211 223445444 79999999998843 1 22 3555566
Q ss_pred hHHHHHHHHHHHhc-CCCeEEecCCCch-hHHH--HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC----CCCc-E
Q psy6266 88 GALRVGAEFLHRIL-NYTTFYYSKPTWE-NHRL--VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA----PDNS-V 158 (218)
Q Consensus 88 ~al~~~~~~l~~l~-~gd~V~i~~P~y~-~y~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~----~~~~-~ 158 (218)
++..+++.++ +. +||+|++++|+|. .|.. .....|+ +++.++. .+.+.+|++.+++.+++. .+++ .
T Consensus 66 ~a~~~~l~~~--~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~v~~--~~~~~~d~~~l~~~i~~~~~~~~~~~~~ 140 (353)
T PLN02721 66 MGNLISVLVH--CDVRGSEVILGDNSHIHLYENGGISTLGGV-HPRTVKN--NEDGTMDLDAIEAAIRPKGDDHFPTTRL 140 (353)
T ss_pred HHHHHHHHHH--ccCCCCeEEEcCccceehhcccchhhhcCc-eeEecCC--CcCCCcCHHHHHHHHHhccCCCCCcceE
Confidence 6655555544 45 8999999999975 4442 5667788 8888876 234568999999988632 0233 4
Q ss_pred EEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceee
Q psy6266 159 IILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 159 iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y 192 (218)
+++.+.+|||||. +|.++|++++++++.| ++|
T Consensus 141 v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD--~a~ 180 (353)
T PLN02721 141 ICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHID--GAR 180 (353)
T ss_pred EEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEE--chh
Confidence 5555678999995 6888899999999999 655
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=121.23 Aligned_cols=167 Identities=15% Similarity=-0.002 Sum_probs=112.9
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|..+|||+.|.+ -| +.+++.|.+|.++.+.. ......|....|...+++.+.+.+.. ..+ .++. +++
T Consensus 37 ~g~~~id~~~~~~---~g-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~-~~~----~~~~--i~~ 105 (385)
T PRK05958 37 DGRRMLNFASNDY---LG-LARHPRLIAAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAE-WFG----AERA--LLF 105 (385)
T ss_pred CCceEEEeeCCCc---cc-CCCCHHHHHHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHH-HhC----CCcE--EEE
Confidence 7899999999952 12 34577888887766643 11122344555654444444443322 111 1222 345
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.+++++...+++++ ++|||+|++++|+|+.+...++..|+ +++.++. .|++.+++.++...+++.+++..
T Consensus 106 ~~g~~~~~~~l~~~--~~~gd~V~~~~~~~~~~~~~~~~~g~-~~~~~~~-------~d~~~l~~~i~~~~~~~~lvi~~ 175 (385)
T PRK05958 106 SSGYAANLAVLTAL--AGKGDLIVSDKLNHASLIDGARLSRA-RVRRYPH-------NDVDALEALLAKWRAGRALIVTE 175 (385)
T ss_pred CcHHHHHHHHHHHh--CCCCCEEEEeCccCHHHHHHHHhcCC-ceEEeCC-------CCHHHHHHHHHhccCCCeEEEEE
Confidence 55566665555554 67999999999999999999898888 7777643 26778888776432235566667
Q ss_pred cCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 164 CAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 164 ~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
.++||||. +|.++|++|++++|.| ++|..
T Consensus 176 ~~~~~~G~~~~l~~i~~ia~~~~~~li~D--e~~~~ 209 (385)
T PRK05958 176 SVFSMDGDLAPLAELVALARRHGAWLLVD--EAHGT 209 (385)
T ss_pred ecccCCCCcCCHHHHHHHHHHhCCEEEEE--Ccccc
Confidence 78999996 8999999999999999 89864
|
|
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=120.26 Aligned_cols=161 Identities=13% Similarity=0.056 Sum_probs=114.8
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCCC-ccCcC------CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSLN-HEYLP------VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGA 89 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~Y~~------~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~a 89 (218)
|-|..+..+.++.|.+|..+..++.... ++... ..-++++|+++++++.. .++++| +.|.|++++
T Consensus 22 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~------~~~~~i--~~~~~~t~~ 93 (401)
T PRK10874 22 YLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLLNA------PDAKNI--VWTRGTTES 93 (401)
T ss_pred EEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHcCC------CCCCEE--EEECCHHHH
Confidence 3334444467889999987776431111 11110 12267899999887632 134554 589999999
Q ss_pred HHHHHHHHH--HhcCCCeEEecCCCchh----HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 90 LRVGAEFLH--RILNYTTFYYSKPTWEN----HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 90 l~~~~~~l~--~l~~gd~V~i~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
+.++++++. .+.|||+|++++|.|++ +....+..|+ +++.++.. +.+.+|++.+++.+. +++.++..+
T Consensus 94 i~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~-~v~~v~~~--~~~~~d~~~l~~~i~---~~t~lv~i~ 167 (401)
T PRK10874 94 INLVAQSYARPRLQPGDEIIVSEAEHHANLVPWLMVAQQTGA-KVVKLPLG--ADRLPDVDLLPELIT---PRTRILALG 167 (401)
T ss_pred HHHHHHHhhhccCCCcCEEEECCcchHHHHHHHHHHHHHhCC-EEEEEecC--CCCcCCHHHHHHhcC---cCcEEEEEe
Confidence 999888763 24689999999999875 4455677788 88888872 235678999988884 345666668
Q ss_pred cCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 164 CAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 164 ~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++|||||. +|.++|++++++++.| +++.
T Consensus 168 ~~~n~tG~~~~~~~i~~l~~~~g~~~ivD--~a~~ 200 (401)
T PRK10874 168 QMSNVTGGCPDLARAITLAHQAGMVVMVD--GAQG 200 (401)
T ss_pred CCcccccCcCCHHHHHHHHHHcCCEEEEE--CCcc
Confidence 89999998 7999999999999999 7774
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-14 Score=124.43 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=98.6
Q ss_pred cCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH---
Q psy6266 46 EYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF--- 120 (218)
Q Consensus 46 ~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~--- 120 (218)
.|+ +..+..+|+++++++..+ +. .+++.+|++|+..++.++ ++|||+|++++|.|+.+...+
T Consensus 57 ~Y~r~~~p~~~~Le~~iA~~~g~---------~~--~l~~~sG~~Ai~~al~~l--l~~Gd~Vl~~~~~y~~~~~~~~~~ 123 (400)
T PRK06234 57 IYSRLGNPTSTEVENKLALLEGG---------EA--AVVAASGMGAISSSLWSA--LKAGDHVVASDTLYGCTFALLNHG 123 (400)
T ss_pred cccCCCCccHHHHHHHHHHHhCC---------Cc--EEEEcCHHHHHHHHHHHH--hCCCCEEEEecCccchHHHHHHHH
Confidence 377 888999999999998743 12 358899999998887766 689999999999998766543
Q ss_pred -HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcC--eEEEeeCCceee
Q psy6266 121 -LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKH--HVYLLRSGRINM 192 (218)
Q Consensus 121 -~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~--~i~ii~D~r~~y 192 (218)
+..|+ +++.++. .|++.+++.+. +++.+++.++|+||||. +|.++|+++ +++++.| ++|
T Consensus 124 ~~~~G~-~v~~vd~-------~d~e~l~~~i~---~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livD--ea~ 190 (400)
T PRK06234 124 LTRYGV-EVTFVDT-------SNLEEVRNALK---ANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVD--NTF 190 (400)
T ss_pred HhhCCe-EEEEECC-------CCHHHHHHHhc---cCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEE--CCC
Confidence 56787 7777643 26778887775 34556666799999997 799999997 9999999 888
Q ss_pred ccCCC
Q psy6266 193 CGLTT 197 (218)
Q Consensus 193 ~~l~~ 197 (218)
....+
T Consensus 191 ~~~~~ 195 (400)
T PRK06234 191 CTPYI 195 (400)
T ss_pred Cchhc
Confidence 76543
|
|
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.2e-13 Score=119.26 Aligned_cols=151 Identities=11% Similarity=0.073 Sum_probs=109.2
Q ss_pred cCchHHHHHHHHHhhcCCCCc---cCcC----CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNH---EYLP----VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFL 97 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~---~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l 97 (218)
++|+.+.++..+..++..... .|.. ..+..++|+.+++++.. . ..++| +.|.|+++++.+++..+
T Consensus 11 ~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~-----~~~~v--~~~~g~t~al~~~~~~~ 82 (376)
T TIGR01977 11 PKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNA-P-----SSAHV--VFTNNATTALNIALKGL 82 (376)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCc-C-----CCCeE--EEeCCHHHHHHHHHHhc
Confidence 567889988877665411111 2332 26678999999887632 1 22344 58899999999888765
Q ss_pred HHhcCCCeEEecCCCchhHHH----HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--
Q psy6266 98 HRILNYTTFYYSKPTWENHRL----VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-- 171 (218)
Q Consensus 98 ~~l~~gd~V~i~~P~y~~y~~----~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-- 171 (218)
+.+||+|+++++.|+++.. +.+..|+ +++.++.. ..+.+|.+.+++.+. +++.+++.++||||||.
T Consensus 83 --~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~~~---~~~~~v~~~~~~n~tG~~~ 154 (376)
T TIGR01977 83 --LKEGDHVITTPMEHNSVARPLECLKEQIGV-EITIVKCD--NEGLISPERIKRAIK---TNTKLIVVSHASNVTGTIL 154 (376)
T ss_pred --cCCCCEEEECcchhhHHHHHHHHHHHHcCc-EEEEEecC--CCCCcCHHHHHHhcC---CCCeEEEEECCCCCccccC
Confidence 6799999999999988754 3344488 88888762 235678999988884 34455556789999998
Q ss_pred ---HHHHHhhcCeEEEeeCCceeec
Q psy6266 172 ---QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 172 ---~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+|.++|++++++++.| ++..
T Consensus 155 ~~~~i~~l~~~~~~~livD--~a~~ 177 (376)
T TIGR01977 155 PIEEIGELAQENGIFFILD--AAQT 177 (376)
T ss_pred CHHHHHHHHHHcCCEEEEE--hhhc
Confidence 7999999999999999 5543
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.3e-13 Score=118.45 Aligned_cols=161 Identities=12% Similarity=0.064 Sum_probs=120.3
Q ss_pred CCCC-ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGE-IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~-~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
+.|- ++||.+ |.+ ..-|-..+++.|.+|+.+..++ |. +.+++++++.+++.. ..+ .++ ++.
T Consensus 4 ~~~~~~~ina~-g~~-t~~g~s~~~~~v~~a~~~~~~~------~~---~~~~~~~~~~~~~a~-~~g----~~~--~~~ 65 (363)
T TIGR01437 4 KYGLKKVINAS-GKM-TILGVSTVSDEVADAQKRGAQN------YF---EIKELVNKTGEYIAN-LLG----VED--AVI 65 (363)
T ss_pred cCCCceEEECC-cEe-ecCCCCCCCHHHHHHHHHHHhc------CC---CHHHHHHHHHHHHHH-hhC----CCe--EEE
Confidence 4454 788876 444 3445556899999988876532 43 567888887777643 222 133 369
Q ss_pred eccChhHHHHHHHHHHHhcCCC---------------eEEecCCCchhH----HHHHHHhCCCcceeEeccCCcCccccH
Q psy6266 83 TLSGTGALRVGAEFLHRILNYT---------------TFYYSKPTWENH----RLVFLNAGFTEAREYRYWNPEKRAVDF 143 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd---------------~V~i~~P~y~~y----~~~~~~~g~~~~~~~~~~~~~~~~~d~ 143 (218)
|.|++.|+.++++++ +.+|| +|+++.|.|.+| ...+...|+ +++.++. .+.+|+
T Consensus 66 ~~g~t~al~~al~al--~~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~-~~v~v~~----~~~~d~ 138 (363)
T TIGR01437 66 VSSASAGIAQSVAAV--ITRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGG-KVVEAGY----ANECSA 138 (363)
T ss_pred EcCHHHHHHHHHHHH--hcCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCC-eEEEEcC----CCCCCH
Confidence 999999999999887 67888 999999999887 467788899 8988864 245899
Q ss_pred HHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 144 TGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 144 ~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.+++++.+. ...+++.++||||||. +|.++|++|+++++.| ++++
T Consensus 139 ~~le~ai~~~--t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD--~a~~ 189 (363)
T TIGR01437 139 EQLEAAITEK--TAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVD--AAAE 189 (363)
T ss_pred HHHHHhcChh--ceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEE--CCCC
Confidence 9999988632 1234445789999996 7999999999999999 7775
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.3e-13 Score=117.72 Aligned_cols=143 Identities=9% Similarity=-0.015 Sum_probs=107.2
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCC
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYT 104 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd 104 (218)
...+.-+++..+++.. +.. .+.....+|++++++++.. . . ++.|.|+++|+.+++.++. +.|||
T Consensus 11 ~~~~~e~~~~~~~l~~--~~~--~~g~~~~~le~~la~~~g~-~--------~--~v~~~sgt~al~lal~al~-~~~Gd 74 (379)
T PRK11658 11 AMGDEELAAVKEVLRS--GWI--TTGPKNQALEQAFCQLTGN-Q--------H--AIAVSSATAGMHITLMALG-IGPGD 74 (379)
T ss_pred CCCHHHHHHHHHHHHc--CCc--cCCHhHHHHHHHHHHHhCC-C--------e--EEEECCHHHHHHHHHHHcC-CCCCC
Confidence 3345556666665543 222 2344589999999987743 1 2 3578899999999887652 46899
Q ss_pred eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhc
Q psy6266 105 TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDK 179 (218)
Q Consensus 105 ~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~ 179 (218)
+|++++|+|+.+...+...|+ +++.++.. .+.+.+|++.+++.+. +++.+++ |+||||. +|.++|++
T Consensus 75 ~Viv~~~~~~~~~~~~~~~G~-~~v~vd~~-~~~~~~d~~~l~~~i~---~~tkav~---~~~~~G~~~d~~~i~~~a~~ 146 (379)
T PRK11658 75 EVITPSLTWVSTLNMIVLLGA-TPVMVDVD-RDTLMVTPEAIEAAIT---PRTKAII---PVHYAGAPADLDAIRAIGER 146 (379)
T ss_pred EEEECCCcHHHHHHHHHHcCC-EEEEEecC-CCcCCcCHHHHHHhcc---cCCeEEE---EeCCCCCcCCHHHHHHHHHH
Confidence 999999999999999999999 99999873 4455679999988875 3445444 5677886 79999999
Q ss_pred CeEEEeeCCceeec
Q psy6266 180 HHVYLLRSGRINMC 193 (218)
Q Consensus 180 ~~i~ii~D~r~~y~ 193 (218)
+++++|.| .+++
T Consensus 147 ~gi~vi~D--~a~a 158 (379)
T PRK11658 147 YGIPVIED--AAHA 158 (379)
T ss_pred cCCeEEEE--CCCc
Confidence 99999999 6665
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.6e-13 Score=114.88 Aligned_cols=148 Identities=7% Similarity=-0.058 Sum_probs=109.3
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
..+++.+++|..+.... ...|.+..+..+|++.+++++.. +. .++|.||++++.++++++ +.+|
T Consensus 8 ~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~l~~~~a~~~g~---------~~--~~~~~~gt~a~~~~~~~l--~~~g 71 (338)
T cd06502 8 TGPTPEMLEAMAAANVG---DDVYGEDPTTAKLEARAAELFGK---------EA--ALFVPSGTAANQLALAAH--TQPG 71 (338)
T ss_pred CCCCHHHHHHHHhcccC---CcccCCCHHHHHHHHHHHHHhCC---------Ce--EEEecCchHHHHHHHHHh--cCCC
Confidence 34688899887765422 23687888889999998887521 22 347788889999888876 6799
Q ss_pred CeEEecCCCchhHHH---HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC----CCcEEEEcccCCCCcHH-----
Q psy6266 104 TTFYYSKPTWENHRL---VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP----DNSVIILHACAHNPTAQ----- 171 (218)
Q Consensus 104 d~V~i~~P~y~~y~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~----~~~~iil~~~p~NPTG~----- 171 (218)
|+|++++|+|+.+.. .....|+ +++.++. . .+.+|++.+++.+.+.. +++.+++.++||||+|.
T Consensus 72 d~v~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~--~-~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~~~ 147 (338)
T cd06502 72 GSVICHETAHIYTDEAGAPEFLSGV-KLLPVPG--E-NGKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPLDE 147 (338)
T ss_pred CeEEEecCcceeeecCCcHHHHcCc-eEEeecC--C-CCcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCHHH
Confidence 999999999876432 3455788 8888875 2 25689999999886421 24556666789998653
Q ss_pred --HHHHHhhcCeEEEeeCCceeec
Q psy6266 172 --QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 172 --~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+|.++|++++++++.| ++|.
T Consensus 148 l~~i~~~~~~~~~~livD--ea~~ 169 (338)
T cd06502 148 LKAISALAKENGLPLHLD--GARL 169 (338)
T ss_pred HHHHHHHHHHcCCeEeec--hHHH
Confidence 5888999999999999 7763
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=99.47 E-value=1e-12 Score=114.97 Aligned_cols=157 Identities=11% Similarity=0.009 Sum_probs=111.3
Q ss_pred CCCCCccCchHHHHHHHHHhhcCCCC-ccC----c--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHH
Q psy6266 19 TEECKPWVLPVVRQAEKELAADDSLN-HEY----L--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALR 91 (218)
Q Consensus 19 ~~~~~~~~~~~v~~a~~~~~~~~~~~-~~Y----~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~ 91 (218)
|-.+..++++.+.+|..+...+.... ++. . -..+..++|+.+++++.. . +++++ +.|.|+++++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~-----~~~~v--~~~~g~t~a~~ 75 (373)
T cd06453 4 DNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINA-P-----SPDEI--IFTRNTTEAIN 75 (373)
T ss_pred cCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCC-C-----CCCeE--EEeCCHHHHHH
Confidence 33444577888998887766431111 111 1 023456788888877632 1 13444 58999999999
Q ss_pred HHHHHHHHhc---CCCeEEecCCCchhHH----HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 92 VGAEFLHRIL---NYTTFYYSKPTWENHR----LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 92 ~~~~~l~~l~---~gd~V~i~~P~y~~y~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++.++ .. +||+|++++|.|++.. ...+..|+ +++.++.. +...+|.+.+++.+.+ ++.+++...
T Consensus 76 ~~~~~l--~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~l~~---~~~~v~~~~ 147 (373)
T cd06453 76 LVAYGL--GRANKPGDEIVTSVMEHHSNIVPWQQLAERTGA-KLKVVPVD--DDGQLDLEALEKLLTE---RTKLVAVTH 147 (373)
T ss_pred HHHHHh--hhcCCCCCEEEECcchhHHHHHHHHHHHhhcCc-EEEEeecC--CCCCcCHHHHHHHhcC---CceEEEEeC
Confidence 988877 34 8999999999999842 23446788 88888873 3456899999988853 344555678
Q ss_pred CCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 165 AHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++||||. +|.++|++++++++.| .++.
T Consensus 148 ~~~~tG~~~~~~~i~~~~~~~~~~li~D--~a~~ 179 (373)
T cd06453 148 VSNVLGTINPVKEIGEIAHEAGVPVLVD--GAQS 179 (373)
T ss_pred cccccCCcCCHHHHHHHHHHcCCEEEEE--hhhh
Confidence 9999998 7999999999999999 6654
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-12 Score=115.06 Aligned_cols=162 Identities=12% Similarity=0.075 Sum_probs=112.7
Q ss_pred EEeCCCCCccCchHHHHHHHHHhhcCCCC-c--cCc----CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChh
Q psy6266 16 AYRTEECKPWVLPVVRQAEKELAADDSLN-H--EYL----PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTG 88 (218)
Q Consensus 16 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~--~Y~----~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~ 88 (218)
+|-|..+..+.++.|.++..+..++.... + .|. -..-++++|+++++++.. .++++| +.|.|+++
T Consensus 25 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~------~~~~~v--~~t~g~t~ 96 (406)
T PRK09295 25 AYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFINA------RSAEEL--VFVRGTTE 96 (406)
T ss_pred EEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHcCc------CCCCeE--EEeCCHHH
Confidence 34444444567889999887766431111 0 110 012267888999887632 134554 58999999
Q ss_pred HHHHHHHHHH--HhcCCCeEEecCCCchh----HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 89 ALRVGAEFLH--RILNYTTFYYSKPTWEN----HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 89 al~~~~~~l~--~l~~gd~V~i~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
++.++++++. .+.+||+|+++++.|++ +..+.+..|+ +++.++.. . .+.+|++.+++.+. +++.++..
T Consensus 97 ~l~~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~-~v~~v~~~-~-~~~~d~~~l~~~i~---~~t~lv~l 170 (406)
T PRK09295 97 GINLVANSWGNSNVRAGDNIIISEMEHHANIVPWQMLCARVGA-ELRVIPLN-P-DGTLQLETLPALFD---ERTRLLAI 170 (406)
T ss_pred HHHHHHHHhhhhcCCCcCEEEECcchhhHHHHHHHHHHHHcCc-EEEEEecC-C-CCCCCHHHHHHhcC---CCcEEEEE
Confidence 9998887642 25789999999987764 4445566788 88888763 2 35578999988874 34556666
Q ss_pred ccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 163 ACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 163 ~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.++||||. +|.++|++++++++.| +++.
T Consensus 171 ~~~~n~tG~~~~~~~i~~~~~~~~~~vivD--~a~~ 204 (406)
T PRK09295 171 THVSNVLGTENPLAEMIALAHQHGAKVLVD--GAQA 204 (406)
T ss_pred ecchhcccccCCHHHHHHHHHHcCCEEEEE--cccc
Confidence 789999998 7899999999999999 6664
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-13 Score=113.75 Aligned_cols=162 Identities=9% Similarity=0.042 Sum_probs=117.9
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH-h-c-
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR-I-L- 101 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~-l-~- 101 (218)
.++..+.+.+....+. ....|..+.|..++++++++++.+ ..+....++. ++.|.|+++|+.++++++.. . .
T Consensus 10 ~~~~~~~~~~~~~~n~--~~~~y~~~~~~~~le~~~~~~~~~-~~g~~~~~~~--~~~t~ggt~a~~~al~~~~~~~~~~ 84 (345)
T cd06450 10 DPPALLLEMLTSAKNA--IDFTWDESPAATEMEAEVVNWLAK-LFGLPSEDAD--GVFTSGGSESNLLALLAARDRARKR 84 (345)
T ss_pred cHHHHHHHHHHHhcCC--CCcccccCchhHHHHHHHHHHHHH-HhCCCCCCCC--EEEeCChhHHHHHHHHHHHHHhhhh
Confidence 3345555666665543 334599999999999999888743 2221112233 35899999999998887632 1 1
Q ss_pred -------C--CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCc
Q psy6266 102 -------N--YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPT 169 (218)
Q Consensus 102 -------~--gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPT 169 (218)
+ +++|++++|+|+++...++..|+ +++.++.. + ...+|++.+++.+.+. ..++.+++.+.++|||
T Consensus 85 ~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~t 161 (345)
T cd06450 85 LKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDV-KVRLVPVD-E-DGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDT 161 (345)
T ss_pred hhcccccccCCeEEEEcCcchhHHHHHHHHHhc-CeEEeeeC-C-CCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCC
Confidence 2 34889999999999888888898 89999873 3 3478999999988641 1144556667899999
Q ss_pred HH-----HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 170 AQ-----QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 170 G~-----~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
|. +|.++|++++++++.| .+|....
T Consensus 162 G~~~~~~~i~~~~~~~~~~l~vD--~a~~~~~ 191 (345)
T cd06450 162 GAIDPLEEIADLAEKYDLWLHVD--AAYGGFL 191 (345)
T ss_pred CCCCCHHHHHHHHHHhCCeEEEe--chhhHHH
Confidence 98 8999999999999999 7877654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.8e-12 Score=114.42 Aligned_cols=160 Identities=10% Similarity=0.019 Sum_probs=112.7
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCC--CccCcCCCC----cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSL--NHEYLPVLG----LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGAL 90 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al 90 (218)
|-|-.+..++++.+++|..+...+... ...|....| ..++|+++++++.. .+++| +.+.|+++++
T Consensus 20 yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ia~~~~~-------~~~~v--~~~~~~t~~l 90 (397)
T TIGR01976 20 FFDNPAGTQIPQSVADAVSAALTRSNANRGGAYESSRRADQVVDDAREAVADLLNA-------DPPEV--VFGANATSLT 90 (397)
T ss_pred EecCCccCCCCHHHHHHHHHHHHhcCCCCCCCchHHHHHHHHHHHHHHHHHHHcCC-------CCCeE--EEeCCHHHHH
Confidence 444445456788999988776643111 123655545 46888888877632 22333 5788999998
Q ss_pred HHHHHHHHH-hcCCCeEEecCCCchhHH----HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 91 RVGAEFLHR-ILNYTTFYYSKPTWENHR----LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 91 ~~~~~~l~~-l~~gd~V~i~~P~y~~y~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
.+++.++.. ++|||+|++++|.|++.. ...+..|+ +++.++.. .+.+.++.+.+++.+. +++.+++.++|
T Consensus 91 ~~~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~~~~~l~~~i~---~~~~lv~i~~~ 165 (397)
T TIGR01976 91 FLLSRAISRRWGPGDEVIVTRLDHEANISPWLQAAERAGA-KVKWARVD-EATGELHPDDLASLLS---PRTRLVAVTAA 165 (397)
T ss_pred HHHHHHHHhcCCCCCEEEEcCCchHhHHHHHHHHHHhcCC-EEEEEecc-ccCCCcCHHHHHHhcC---CCceEEEEeCC
Confidence 877665532 578999999999987643 34566798 88888763 3235678888888874 34556666789
Q ss_pred CCCcHH-----HHHHHhhcCeEEEeeCCceee
Q psy6266 166 HNPTAQ-----QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~~i~ii~D~r~~y 192 (218)
+||||. +|.++|++|+++++.| ++.
T Consensus 166 ~n~tG~~~~~~~i~~~~~~~~~~~ivD--~a~ 195 (397)
T TIGR01976 166 SNTLGSIVDLAAITELVHAAGALVVVD--AVH 195 (397)
T ss_pred CCCCCccCCHHHHHHHHHHcCCEEEEe--hhh
Confidence 999998 7999999999999999 554
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=113.55 Aligned_cols=167 Identities=12% Similarity=0.065 Sum_probs=117.7
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC-cc--Cc----CCCCcHHHHHHHHHHhcCCCCCCCcCCCc
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN-HE--YL----PVLGLESFSSAATRMLLGGDASPPLREGR 77 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~--Y~----~~~G~~~lr~aia~~~~~~~~~~~~~~~~ 77 (218)
.|..++.|--|. .| ++|+.|.+|..+..++.... +. |. ...+++++|+++++++.. . .+++
T Consensus 15 ~~~~~~yld~~~----~~--~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~-~-----~~~~ 82 (403)
T TIGR01979 15 NGKPLVYLDSAA----TS--QKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINA-A-----SDEE 82 (403)
T ss_pred CCCceEEEeCcc----cc--CCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCc-C-----CCCe
Confidence 366777777774 23 56888888887765431111 10 11 123577999999987632 1 1344
Q ss_pred eEEEEeccChhHHHHHHHHHH--HhcCCCeEEecCCCchhH----HHHHHHhCCCcceeEeccCCcCccccHHHHHHHHh
Q psy6266 78 AFGVQTLSGTGALRVGAEFLH--RILNYTTFYYSKPTWENH----RLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLV 151 (218)
Q Consensus 78 v~~~~t~G~~~al~~~~~~l~--~l~~gd~V~i~~P~y~~y----~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~ 151 (218)
| +.|.|+++++.+++.++. .+.+||+|++++|.|++. ....+..|+ +++.++.. +.+.++.+.+++.+.
T Consensus 83 v--~~~~g~t~~l~~~~~~~~~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~-~~~~v~~~--~~~~~~~~~l~~~i~ 157 (403)
T TIGR01979 83 I--VFTRGTTESINLVAYSWGDSNLKAGDEIVISEMEHHANIVPWQLLAERTGA-TLKFIPLD--DDGTLDLDDLEKLLT 157 (403)
T ss_pred E--EEeCCHHHHHHHHHHHhhhhcCCCCCEEEECcchhhHHHHHHHHHHHhcCc-EEEEEecC--CCCCCCHHHHHHHhc
Confidence 4 588999999998887652 146899999999987763 345566788 88888763 345678899988885
Q ss_pred cCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 152 NAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.+++.++++||||. +|.++|++++++++.| .++.
T Consensus 158 ---~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD--~a~~ 199 (403)
T TIGR01979 158 ---EKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVD--GAQA 199 (403)
T ss_pred ---cCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEE--chhh
Confidence 34556666789999998 7899999999999999 6664
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=114.96 Aligned_cols=124 Identities=15% Similarity=0.141 Sum_probs=92.6
Q ss_pred ccCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH--
Q psy6266 45 HEYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF-- 120 (218)
Q Consensus 45 ~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~-- 120 (218)
+.|+.. .+...|+++++++..+ +. +++|.|+++|+..++.++ ++|||+|++++|.|++....+
T Consensus 53 ~~Y~r~~npt~~~Le~~iA~le~~---------~~--~~~~~sG~~Ai~~~l~al--l~~GD~Vvv~~~~Y~~t~~l~~~ 119 (394)
T PRK09028 53 MFYGRRGTPTHFAFQAAIVELEGG---------AG--TALYPSGAAAISNALLSF--LKAGDHLLMVDSCYEPTRDLCDK 119 (394)
T ss_pred ceecCCCCchHHHHHHHHHHHhCC---------Cc--EEEECCHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHH
Confidence 558874 4557999999988633 12 358999999999988876 789999999999998876544
Q ss_pred --HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 121 --LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 121 --~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+..|. ++..+ +.. +.+.+++.+. +++++++.++|+||||. +|.++|++++++++.| ++|.
T Consensus 120 ~l~~~Gi-~v~~v---~~~----~~e~l~~~l~---~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD--~t~a 186 (394)
T PRK09028 120 ILKGFGI-ETTYY---DPM----IGEGIRELIR---PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLD--NTWA 186 (394)
T ss_pred hhhhcce-EEEEE---CCC----CHHHHHHhcC---cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE--CCcc
Confidence 33455 44443 211 3455666663 45667777899999997 7889999999999999 8886
Q ss_pred c
Q psy6266 194 G 194 (218)
Q Consensus 194 ~ 194 (218)
.
T Consensus 187 ~ 187 (394)
T PRK09028 187 S 187 (394)
T ss_pred c
Confidence 3
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.44 E-value=9.2e-13 Score=117.66 Aligned_cols=128 Identities=11% Similarity=0.080 Sum_probs=96.9
Q ss_pred cCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH--
Q psy6266 46 EYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-- 121 (218)
Q Consensus 46 ~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-- 121 (218)
-|+ +..-..+|.+.++++..+ +. +++|+||++|+.++++++ +.+||+|++++|.|+.+...+.
T Consensus 69 ~Y~r~~~Pt~~~LE~~lA~l~g~---------~~--~l~~~sG~~Ai~~al~al--~~~GD~Vl~~~~~Y~~~~~~~~~~ 135 (418)
T PLN02242 69 IYSRHFNPTVLNLGRQMAALEGT---------EA--AYCTASGMSAISSVLLQL--CSSGGHVVASNTLYGGTHALLAHF 135 (418)
T ss_pred cccCCCChhHHHHHHHHHHHhCC---------Ce--EEEEccHHHHHHHHHHHH--hCCCCEEEEcCCcHHHHHHHHHHh
Confidence 465 345578888888877633 22 358999999999988877 6799999999999999977653
Q ss_pred ---HhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 122 ---NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 122 ---~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
..|+ +++.++. .|++.+++.+.. .++.+++.++|+||||. +|.++|+++++++|.| ++|.
T Consensus 136 ~~~~~G~-~~~~~d~-------~d~e~l~~~i~~--~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livD--ea~~ 203 (418)
T PLN02242 136 LPRKCNI-TTTFVDI-------TDLEAVKKAVVP--GKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVD--NTFA 203 (418)
T ss_pred hhhccCc-eEEEcCC-------CCHHHHHHhcCc--CCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEE--CCCC
Confidence 3565 5544422 277888877742 13556666799999998 8999999999999999 8998
Q ss_pred cCCCC
Q psy6266 194 GLTTQ 198 (218)
Q Consensus 194 ~l~~~ 198 (218)
.+.++
T Consensus 204 ~~~~~ 208 (418)
T PLN02242 204 PMVLS 208 (418)
T ss_pred ccCCC
Confidence 77654
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-12 Score=114.67 Aligned_cols=124 Identities=13% Similarity=0.086 Sum_probs=97.2
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHH-------HhcCCCeEEecCCCchhHHHHHHHhCC
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLH-------RILNYTTFYYSKPTWENHRLVFLNAGF 125 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~-------~l~~gd~V~i~~P~y~~y~~~~~~~g~ 125 (218)
..+|++++++++.. +. ++.|.++++|+.+++.++. .+.|||+|++++|+|+.+...+...|+
T Consensus 65 ~~~fe~~lA~~~g~---------~~--~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~ 133 (438)
T PRK15407 65 NDAFEKKLAEFLGV---------RY--ALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGL 133 (438)
T ss_pred HHHHHHHHHHHhCC---------Ce--EEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCC
Confidence 48899999988743 12 3578888999988877652 257899999999999999999999999
Q ss_pred CcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-HHHHHhhcCeEEEeeCCceeec
Q psy6266 126 TEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.++.. .+.+.+|++.+++.+.. ....+++.+.++||+.. +|.++|++|+++||+| .+++
T Consensus 134 -~pv~vdvd-~~~~~id~~~le~~i~~--~tkaVi~~~~~G~p~dl~~I~~la~~~gi~vIeD--aa~a 196 (438)
T PRK15407 134 -VPVFVDVE-LPTYNIDASLLEAAVSP--KTKAIMIAHTLGNPFDLAAVKAFCDKHNLWLIED--NCDA 196 (438)
T ss_pred -EEEEEecC-CCcCCcCHHHHHHHcCc--CCeEEEEeCCCCChhhHHHHHHHHHHCCCEEEEE--Cccc
Confidence 89998773 34567899999888753 22345555667888776 8999999999999999 5543
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.43 E-value=2e-12 Score=117.38 Aligned_cols=170 Identities=6% Similarity=-0.082 Sum_probs=118.4
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC-----CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL-----NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~-----~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.|..+|||+.|.|.+ +..++.|++|..+.+++.+. ...|.+..+..+|++++++++-. ++.|
T Consensus 107 ~G~~~id~~s~~~lg----l~~~~~i~ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~--------~~~i- 173 (481)
T PLN02822 107 NGKDVVNFASANYLG----LIGNEKIKESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGT--------PDSI- 173 (481)
T ss_pred CCceEEEeECCCcCC----CCCCHHHHHHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCC--------CCEE-
Confidence 588999999997632 34588888887777754110 11466777799999999998743 2333
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC---CCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDN 156 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~ 156 (218)
+.+.|.+ ++..++.++ .++||.|++...++.++...+.+.|. +++.++..+. -+++...+.++.. .++
T Consensus 174 -~~s~G~~-a~~sai~a~--~~~gd~Ii~d~~~H~s~~~~~~ls~~-~~~~~~~nd~----~~l~~~l~~~~~~~~~~~~ 244 (481)
T PLN02822 174 -LYSYGLS-TIFSVIPAF--CKKGDIIVADEGVHWGIQNGLYLSRS-TIVYFKHNDM----ESLRNTLEKLTAENKRKKK 244 (481)
T ss_pred -EECCHHH-HHHHHHHHh--CCCCCEEEEeCCccHHHHHHHHHcCC-eEEEECCCCH----HHHHHHHHHHhhhhcccCC
Confidence 4666766 455566655 57999999988888888778888888 8888765211 1333333333321 122
Q ss_pred -cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 157 -SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 157 -~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.+++..+++|+||. +|.++|++|++++|.| |+|+...++
T Consensus 245 ~~~~Ivve~i~~~~G~i~~L~~i~~l~~k~~~~LIvD--Ea~s~gvlG 290 (481)
T PLN02822 245 LRRYIVVEAIYQNSGQIAPLDEIVRLKEKYRFRVLLD--ESNSFGVLG 290 (481)
T ss_pred CcEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEE--CCccccccC
Confidence 245666789999997 8999999999999999 999844433
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=111.58 Aligned_cols=144 Identities=15% Similarity=0.064 Sum_probs=99.4
Q ss_pred chHHHHHHHHHhhcCCC-CccCcCCCC----cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhc
Q psy6266 27 LPVVRQAEKELAADDSL-NHEYLPVLG----LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRIL 101 (218)
Q Consensus 27 ~~~v~~a~~~~~~~~~~-~~~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~ 101 (218)
++.|.+|+++.++.... ...|....| ..+|++++++++ + . +.. +++.++++++.++++++ ++
T Consensus 17 ~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~-~-------~~~--iv~~sg~~a~~~~~~~~--~~ 83 (349)
T cd06454 17 HPEVIEAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFH-G-K-------EAA--LVFSSGYAANDGVLSTL--AG 83 (349)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHh-C-C-------CCE--EEeccHHHHHHHHHHHh--cC
Confidence 47788888877753111 122333334 356666666654 2 1 122 35555677777766655 57
Q ss_pred CCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC--CCCcEEEEcccCCCCcHH-----HHH
Q psy6266 102 NYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA--PDNSVIILHACAHNPTAQ-----QVA 174 (218)
Q Consensus 102 ~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~iil~~~p~NPTG~-----~l~ 174 (218)
|||+|++++|+|+++...++..|+ +++.++. .|.+.+++.+++. ++++.+++.++++||||. +|.
T Consensus 84 ~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~~~~-------~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~ 155 (349)
T cd06454 84 KGDLIISDSLNHASIIDGIRLSGA-KKRIFKH-------NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAPLPELV 155 (349)
T ss_pred CCCEEEEehhhhHHHHHHHHHcCC-ceEEecC-------CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccCHHHHH
Confidence 999999999999999888888898 7776642 3556666666542 134566666789999998 789
Q ss_pred HHhhcCeEEEeeCCceeec
Q psy6266 175 HMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 175 ~l~~~~~i~ii~D~r~~y~ 193 (218)
++|+++++++|.| ++|.
T Consensus 156 ~~~~~~~~~livD--~a~~ 172 (349)
T cd06454 156 DLAKKYGAILFVD--EAHS 172 (349)
T ss_pred HHHHHcCCEEEEE--cccc
Confidence 9999999999999 7775
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-12 Score=113.45 Aligned_cols=147 Identities=8% Similarity=-0.018 Sum_probs=102.3
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
+.+++.+++|..+... ....|.|..+..+|++++++++ + . +.+ +++.|++++..+.+.++ +.||
T Consensus 10 ~~p~~~~~~a~~~~~~---~~~~Y~~~~~~~~L~~~la~~~-g------~--~~~--~v~~~g~~a~~~~l~~~--~~~g 73 (333)
T PRK10534 10 TRPSRAMLEAMMAAPV---GDDVYGDDPTVNALQDYAAELS-G------K--EAA--LFLPTGTQANLVALLSH--CERG 73 (333)
T ss_pred CCCCHHHHHHHHhccC---CCcccCCCHHHHHHHHHHHHHh-C------C--CeE--EEeCchHHHHHHHHHHh--cCCC
Confidence 3478899988766442 3567999999999999999885 3 1 122 47888888877777655 6799
Q ss_pred CeEEecCCCchh-HHHH-HHHhC-CCcceeEeccCCcCccccHHHHHHHHhcCC---CCcEEEEcccCCCCcHH------
Q psy6266 104 TTFYYSKPTWEN-HRLV-FLNAG-FTEAREYRYWNPEKRAVDFTGMYEDLVNAP---DNSVIILHACAHNPTAQ------ 171 (218)
Q Consensus 104 d~V~i~~P~y~~-y~~~-~~~~g-~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~~~iil~~~p~NPTG~------ 171 (218)
|+|+++.|+|.. |... ....+ + +++.++. .+.+.+|++.+++++.... .++.+++.+ |||||.
T Consensus 74 d~vi~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~--np~~G~v~~~~~ 148 (333)
T PRK10534 74 EEYIVGQAAHNYLYEAGGAAVLGSI-QPQPIDA--AADGTLPLDKVAAKIKPDDIHFARTRLLSLE--NTHNGKVLPREY 148 (333)
T ss_pred CeeEEechhhhhHhcCCchHHhcCc-eEEeecC--CCCCCCCHHHHHHhhcccCcCcccceEEEEe--cCCCCeecCHHH
Confidence 999999998863 5321 23333 5 6666655 2356789999988874310 134444444 455687
Q ss_pred --HHHHHhhcCeEEEeeCCceeec
Q psy6266 172 --QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 172 --~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++.++|++|+++++.| |+|.
T Consensus 149 l~~i~~~~~~~~~~lvvD--EA~~ 170 (333)
T PRK10534 149 LKQAWEFTRERNLALHVD--GARI 170 (333)
T ss_pred HHHHHHHHHHcCCeEEee--HHHH
Confidence 5677889999999999 7765
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-12 Score=114.19 Aligned_cols=166 Identities=14% Similarity=0.068 Sum_probs=115.6
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC-cc---CcC---CCCcHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN-HE---YLP---VLGLESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~---Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
|..+|.|.-+. ..++++.|.+|..+...+.... ++ |.. ...++++|+++++++.. . ++++|
T Consensus 30 ~~~~iyLd~a~------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~-~-----~~~~v 97 (424)
T PLN02855 30 GSKLVYLDNAA------TSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFINA-S-----TSREI 97 (424)
T ss_pred CCCeEEeeCcc------ccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcCC-C-----CCCEE
Confidence 44566666664 2357888999887765431111 11 211 12357899999987632 1 23454
Q ss_pred EEEEeccChhHHHHHHHHHH--HhcCCCeEEecCCCchh----HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhc
Q psy6266 79 FGVQTLSGTGALRVGAEFLH--RILNYTTFYYSKPTWEN----HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~--~l~~gd~V~i~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 152 (218)
+.|.|+++++.++++.+. .+.+||+|++++|.|++ +..+.+..|+ +++.++.. . ...+|++.+++.+.
T Consensus 98 --~~t~g~t~al~~i~~~~~~~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~-~v~~v~~~-~-~~~~~~~~l~~~i~- 171 (424)
T PLN02855 98 --VFTRNATEAINLVAYTWGLANLKPGDEVILSVAEHHSNIVPWQLVAQKTGA-VLKFVGLT-P-DEVLDVEQLKELLS- 171 (424)
T ss_pred --EEeCCHHHHHHHHHHHhhhhcCCCcCEEEECCCccHHHHHHHHHHHHHcCC-EEEEEecC-C-CCCcCHHHHHHHhc-
Confidence 588999999998877531 25789999999997764 4445566788 88888763 2 24578999988885
Q ss_pred CCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 153 APDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.+++.+.++||||. +|.++|++++++++.| .++.
T Consensus 172 --~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD--~a~~ 213 (424)
T PLN02855 172 --EKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVD--ACQS 213 (424)
T ss_pred --cCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEE--hhhh
Confidence 34556666789999998 7899999999999999 6664
|
|
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=115.83 Aligned_cols=167 Identities=16% Similarity=0.105 Sum_probs=114.4
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-C----CCCccCcCCCCcHHHHHHHHHHh---cCCCCCCCcCCCceE
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-D----SLNHEYLPVLGLESFSSAATRML---LGGDASPPLREGRAF 79 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~----~~~~~Y~~~~G~~~lr~aia~~~---~~~~~~~~~~~~~v~ 79 (218)
..|||.-|. -.+++.|++|+...... . .+...|....+.+++++++.+++ ++ . +...
T Consensus 20 ~~~~~~~~~-------~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g-~-----~~~~-- 84 (402)
T cd00378 20 ETLELIASE-------NFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFG-A-----EYAN-- 84 (402)
T ss_pred hCeeeeccC-------CcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhC-C-----Ccee--
Confidence 356776662 24688999987653311 0 12344777888889988765443 44 2 2222
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH-----HHHhCCCcceeEeccCC-cCccccHHHHHHHHhcC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-----FLNAGFTEAREYRYWNP-EKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-----~~~~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~ 153 (218)
+.+.+|++|+.++++++ ++|||+|++++|.|+.|... ++..|+ ++..+++... +.+.+|++.+++.+.+
T Consensus 85 -v~~~sgt~a~~~~l~~l--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~id~~~l~~~i~~- 159 (402)
T cd00378 85 -VQPHSGSQANLAVYFAL--LEPGDTIMGLDLSHGGHLTHGSFTKVSASGK-LFESVPYGVDPETGLIDYDALEKMALE- 159 (402)
T ss_pred -eecCCcHHHHHHHHHHh--cCCCCEEEEecCccCccccccccccccccce-eEEEecCCcCcccCCcCHHHHHHHHHh-
Confidence 23346789999888877 68999999999999987543 566777 6666665322 2578899999998854
Q ss_pred CCCcEEEEcccCCCCcHH---HHHHHhhcCeEEEeeCCcee-eccCCC
Q psy6266 154 PDNSVIILHACAHNPTAQ---QVAHMVDKHHVYLLRSGRIN-MCGLTT 197 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~---~l~~l~~~~~i~ii~D~r~~-y~~l~~ 197 (218)
+++.+++.++++||+.. +|.++|++++++++.| ++ |.++.+
T Consensus 160 -~~~~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D--~a~~~g~~~ 204 (402)
T cd00378 160 -FKPKLIVAGASAYPRPIDFKRFREIADEVGAYLLVD--MAHVAGLVA 204 (402)
T ss_pred -CCCCEEEecCcccCCCcCHHHHHHHHHhcCCEEEEE--ccchhhhhh
Confidence 23344455567898875 8999999999999999 77 455543
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-12 Score=112.27 Aligned_cols=147 Identities=15% Similarity=0.068 Sum_probs=107.8
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
|...+.-+++..+++.. . .|....+..+||+++++++.. + .. +.+.++++|+.+++.++. +.||
T Consensus 6 ~~~~~~~~~~v~~~~~~--~--~~~~g~~~~~le~~la~~~g~-~--------~~--v~~~sgt~al~~~l~al~-~~~G 69 (380)
T TIGR03588 6 QSIDQDDIDAVVEVLKS--D--FLTQGPTVPAFEEALAEYVGA-K--------YA--VAFNSATSALHIACLALG-VGPG 69 (380)
T ss_pred CCCCHHHHHHHHHHHhc--C--CccCChhHHHHHHHHHHHHCC-C--------eE--EEEcCHHHHHHHHHHHcC-CCCC
Confidence 33445556666665533 2 255566789999999988743 2 12 356688999999887652 4689
Q ss_pred CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCCcEEEEcccCCCCcHH-----HHHHHh
Q psy6266 104 TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDNSVIILHACAHNPTAQ-----QVAHMV 177 (218)
Q Consensus 104 d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~iil~~~p~NPTG~-----~l~~l~ 177 (218)
|+|++++|+|+.+...++..|+ +++.++.. .+.+.+|++.+++.+.+. .+++.+++ +.||+|. +|.++|
T Consensus 70 d~Viv~~~~~~~~~~~~~~~G~-~~~~~~~~-~~~~~~d~~~l~~~i~~~~~~~t~~v~---~~~~~G~~~~~~~i~~l~ 144 (380)
T TIGR03588 70 DRVWTTPITFVATANCALYCGA-KVDFVDID-PDTGNIDEDALEKKLAAAKGKLPKAIV---PVDFAGKSVDMQAIAALA 144 (380)
T ss_pred CEEEeCCcchHHHHHHHHHcCC-EEEEEecC-CCcCCcCHHHHHHHhhcccCCCceEEE---EeCCCCccCCHHHHHHHH
Confidence 9999999999999999999999 99999873 345678999999988632 12344444 3567885 899999
Q ss_pred hcCeEEEeeCCceeec
Q psy6266 178 DKHHVYLLRSGRINMC 193 (218)
Q Consensus 178 ~~~~i~ii~D~r~~y~ 193 (218)
++|+++||+| .+.+
T Consensus 145 ~~~~~~lI~D--~a~a 158 (380)
T TIGR03588 145 KKHGLKIIED--ASHA 158 (380)
T ss_pred HHcCCEEEEE--CCCc
Confidence 9999999999 5543
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.9e-12 Score=110.56 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=96.3
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEe
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYR 132 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~ 132 (218)
..+|++++++++ + . +++ +.|.|+++++.++++++ +.|||+|++++|+|.+....++..|+ +++.++
T Consensus 46 ~~~l~~~la~~~-g------~--~~i--~~~~g~t~al~~~l~~~--~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~v~ 111 (361)
T cd06452 46 IKDFHHDLAEFL-G------M--DEA--RVTPGAREGKFAVMHSL--CEKGDWVVVDGLAHYTSYVAAERAGL-NVREVP 111 (361)
T ss_pred HHHHHHHHHHHc-C------C--ceE--EEeCCHHHHHHHHHHHh--cCCCCEEEEcCCcchHHHHHHHhcCC-EEEEEe
Confidence 458888888764 3 2 344 58999999999988876 67999999999986665567788899 899988
Q ss_pred ccCCcCccccHHHHHHHHhcCC----CCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 133 YWNPEKRAVDFTGMYEDLVNAP----DNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 133 ~~~~~~~~~d~~~~~~~l~~~~----~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
......+.+|++.+++.+++.. +++.+++.++|+||||. +|.+++++++++++.| ++|.
T Consensus 112 ~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD--~a~~ 179 (361)
T cd06452 112 NTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLN--GAYT 179 (361)
T ss_pred cCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEE--CCcc
Confidence 7322234789999988886321 23445555789999998 7899999999999999 8886
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.6e-12 Score=112.16 Aligned_cols=161 Identities=10% Similarity=0.072 Sum_probs=114.0
Q ss_pred CCCCCccCchHHHHHHHHHhhc----CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHH
Q psy6266 19 TEECKPWVLPVVRQAEKELAAD----DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGA 94 (218)
Q Consensus 19 ~~~~~~~~~~~v~~a~~~~~~~----~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~ 94 (218)
|..+..++++.|.++..+..++ +...+.|. ..+.+.|+++++++... .+. .++++| +.|.|+++++.+++
T Consensus 4 d~aa~~~~~~~v~~~~~~~~~~~~~n~~~~~~~~-~~~~~~l~~a~~~~~~~-~~~--~~~~~i--~~t~g~teal~~~~ 77 (382)
T TIGR03403 4 DNNATTMLDPKVKELMDPFFCDIYGNPNSLHQFG-TATHPAIAEALDKLYKG-INA--RDLDDI--IITSCATESNNWVL 77 (382)
T ss_pred cCcCCCCCCHHHHHHHHHHHHhcCcCCccccHHH-HHHHHHHHHHHHHHHHH-cCc--CCCCeE--EEeCCHHHHHHHHH
Confidence 4445557788999998776643 11222333 35678999999888743 321 134554 58999999999988
Q ss_pred HHHHH---hcC-CCeEEecCCCchhHHHH---HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 95 EFLHR---ILN-YTTFYYSKPTWENHRLV---FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 95 ~~l~~---l~~-gd~V~i~~P~y~~y~~~---~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++.. +.+ +|+|+++++.||++... ++..|+ +++.++.. . .+.+|++.+++.+.. ++.+++.++|||
T Consensus 78 ~~~~~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~-~v~~v~~~-~-~g~~d~~~l~~~i~~---~t~lv~~~~~~n 151 (382)
T TIGR03403 78 KGVYFDEILKGGKNHIITTEVEHPAVRATCAFLESLGV-EVTYLPIN-E-QGTITAEQVREAITE---KTALVSVMWANN 151 (382)
T ss_pred HHHHHhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCC-EEEEEecC-C-CCCCCHHHHHHhccc---CCeEEEEEcccC
Confidence 76521 145 47899998877776644 456788 88888873 2 356788888888753 345566678999
Q ss_pred CcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 168 PTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 168 PTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
|||. +|.+++++++++++.| .++.
T Consensus 152 ~tG~~~~~~~I~~la~~~g~~~ivD--~a~~ 180 (382)
T TIGR03403 152 ETGMIFPIKEIGEICKERGVLFHTD--AVQA 180 (382)
T ss_pred CCccccCHHHHHHHHHHcCCEEEEe--chhh
Confidence 9998 7999999999999999 5544
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-12 Score=110.95 Aligned_cols=146 Identities=16% Similarity=0.132 Sum_probs=104.9
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
|...+..++|..+++.. +. + .|...+++++.+++.. .. ..+. ++.|.|+++|+.+++.++. +.||
T Consensus 7 p~~~~~e~~a~~~~~~~--~~--~---~~~g~~~~~~e~~la~-~~----g~~~--~v~~~sgt~aL~~~l~al~-~~pG 71 (376)
T TIGR02379 7 PPVTGQELEYIAEAISE--GK--L---SGDGPFSRRCETWLEN-RT----GTKK--ALLTPSCTAALEMAALLLD-IQPG 71 (376)
T ss_pred CCCCHHHHHHHHHHHHc--CC--c---cCCcHHHHHHHHHHHH-Hh----CCCe--EEEeCCHHHHHHHHHHHcC-CCCc
Confidence 34455666676666643 12 2 2334556666655532 21 1233 3688999999998877652 5799
Q ss_pred CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhh
Q psy6266 104 TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVD 178 (218)
Q Consensus 104 d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~ 178 (218)
|+|++++|+|+.+...+...|+ +++.++.. .+.+.+|++.+++.++ +++.+++ |+||||. +|.++|+
T Consensus 72 d~Viv~~~t~~~~~~~~~~~G~-~~v~vd~d-~~~~~~d~~~le~~i~---~~tk~Ii---p~~~~G~~~d~~~I~~la~ 143 (376)
T TIGR02379 72 DEVIMPSYTFVSTANAFVLRGA-KIVFVDIR-PDTMNIDETLIESAIT---HRTKAIV---PVHYAGVACDMDTIMALAN 143 (376)
T ss_pred CEEEECCCCcHHHHHHHHHcCC-EEEEEecC-CCcCCCCHHHHHHhcC---cCceEEE---EeCCCCCccCHHHHHHHHH
Confidence 9999999999999999999999 99999883 4446789888888775 3445554 5788997 8999999
Q ss_pred cCeEEEeeCCceeecc
Q psy6266 179 KHHVYLLRSGRINMCG 194 (218)
Q Consensus 179 ~~~i~ii~D~r~~y~~ 194 (218)
+|+++||+| .+++.
T Consensus 144 ~~~i~vIeD--aa~~~ 157 (376)
T TIGR02379 144 KHQLFVIED--AAQGV 157 (376)
T ss_pred HCCCEEEEE--Ccccc
Confidence 999999999 66543
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-12 Score=110.79 Aligned_cols=149 Identities=14% Similarity=0.035 Sum_probs=104.7
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCC-CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhc
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPV-LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRIL 101 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~ 101 (218)
..++++.|.+|..+... .++|... .=.+++|+.+++++ + .+++++ ++.|.|+++++.++++++ +.
T Consensus 7 ~~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~~~~~la~~~-g------~~~~~~-~~~~~~~t~al~~~~~~~--~~ 72 (356)
T cd06451 7 PSNVPPRVLKAMNRPML----GHRSPEFLALMDEILEGLRYVF-Q------TENGLT-FLLSGSGTGAMEAALSNL--LE 72 (356)
T ss_pred CcCCCHHHHHHhCCCcc----CCCCHHHHHHHHHHHHHHHHHh-c------CCCCCE-EEEecCcHHHHHHHHHHh--CC
Confidence 45678888887654321 2223211 01456677666655 3 222333 357788899999988877 67
Q ss_pred CCCeEEecCCCchh--HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHH
Q psy6266 102 NYTTFYYSKPTWEN--HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVA 174 (218)
Q Consensus 102 ~gd~V~i~~P~y~~--y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~ 174 (218)
+||+|++++|++++ +...++..|+ +++.++.. . ...+|.+.+++.+++ .++.+++.+.++||||. +|.
T Consensus 73 ~g~~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~~~~i~ 147 (356)
T cd06451 73 PGDKVLVGVNGVFGDRWADMAERYGA-DVDVVEKP-W-GEAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNPLEGIG 147 (356)
T ss_pred CCCEEEEecCCchhHHHHHHHHHhCC-CeEEeecC-C-CCCCCHHHHHHHHhc--cCCCEEEEeccCCCcccccCHHHHH
Confidence 99999999987665 5667788899 89999873 2 356899999998864 13344444678999998 788
Q ss_pred HHhhcCeEEEeeCCceee
Q psy6266 175 HMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 175 ~l~~~~~i~ii~D~r~~y 192 (218)
++|++++++++.| +++
T Consensus 148 ~~a~~~~~~li~D--~~~ 163 (356)
T cd06451 148 ALAKKHDALLIVD--AVS 163 (356)
T ss_pred HHHHhcCCEEEEe--eeh
Confidence 9999999999999 654
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.8e-12 Score=114.41 Aligned_cols=153 Identities=14% Similarity=0.108 Sum_probs=106.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC-----CCCcHHHHHHHHHHh---cCCCCCCCcCCCceE
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP-----VLGLESFSSAATRML---LGGDASPPLREGRAF 79 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~-----~~G~~~lr~aia~~~---~~~~~~~~~~~~~v~ 79 (218)
+.++|+.|.+ +..++..++++..... ..++|+| ..| +|+++.++. .. ..+ .+.++
T Consensus 69 ~~~~lg~g~~-----~~~~p~~~~~~~~~~~----~~~~y~~~~~~~~~g---~~~~~~e~~~~la~-l~g--~~~~~-- 131 (447)
T PRK00451 69 YPSFLGAGAY-----DHYIPAVVDHIISRSE----FYTAYTPYQPEISQG---TLQAIFEYQTMICE-LTG--MDVAN-- 131 (447)
T ss_pred CcccCccccc-----CCcCcHHHHHHHhchh----HHHhcCCCCCccchH---HHHHHHHHHHHHHH-HhC--CCcce--
Confidence 5778999964 3466777776543321 2345777 444 555554322 11 111 23344
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH----hCCCcceeEeccCCcCccccHHHHHHHHhcCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN----AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~----~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 155 (218)
+..|.|+++++..++.++. +.+||+|++++|.|++|...++. .|+ +++.+++. + . .+|.+.+++.+. +
T Consensus 132 v~~~~g~t~~~~~~~~a~~-~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~-~~~~v~~~-~-~-~~d~~~l~~~i~---~ 203 (447)
T PRK00451 132 ASMYDGATALAEAALMAVR-ITKRKKVLVSGAVHPEYREVLKTYLKGQGI-EVVEVPYE-D-G-VTDLEALEAAVD---D 203 (447)
T ss_pred EEecCcHHHHHHHHHHHHH-hcCCCEEEEeCccCHHHHHHHHHHHHhCCc-EEEEecCC-C-C-CCCHHHHHHhcC---C
Confidence 3588999999888777652 36899999999999999987765 588 88888863 3 3 689999988885 3
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhhcCeEEEee
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLR 186 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~ 186 (218)
++.+++.++| ||||. +|.++|++++++++.
T Consensus 204 ~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv 238 (447)
T PRK00451 204 DTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIV 238 (447)
T ss_pred CeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEE
Confidence 4455555678 99998 799999999999887
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.3e-12 Score=112.13 Aligned_cols=123 Identities=11% Similarity=0.089 Sum_probs=90.2
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH-hCCCcc
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN-AGFTEA 128 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~-~g~~~~ 128 (218)
..-..+|+++++++..+ +. +++|.|+++|+.+++.++ +.+||+|++++|+|+.....+.. .+. ..
T Consensus 50 ~p~~~~le~~lA~l~g~---------~~--v~~~~gg~~Ai~~~l~al--l~~GD~Vl~~~p~y~~~~~~~~~~~~~-~~ 115 (382)
T TIGR02080 50 NPTRDLLQQALAELEGG---------AG--AVVTNTGMSAIHLVTTAL--LGPDDLLVAPHDCYGGTYRLLNALAKK-GC 115 (382)
T ss_pred CchHHHHHHHHHHHhCC---------Cc--EEEEcCHHHHHHHHHHHH--cCCCCEEEEcCCCcHHHHHHHHHHHhh-cC
Confidence 34467888988887632 23 369999999999999877 68999999999999965544433 222 22
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..+...+ ..|.+.+++++. +++.+++.++|+||||. +|.++|++++++++.| ++|...
T Consensus 116 ~~v~~~d----~~d~~~l~~ai~---~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD--~a~~~~ 178 (382)
T TIGR02080 116 FRVLFVD----QGDEQALRAALA---QKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVD--NTFLSP 178 (382)
T ss_pred eEEEEEC----CCCHHHHHHhcC---cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE--CCCccc
Confidence 3333322 237788888775 34556666799999997 8999999999999999 888744
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=109.03 Aligned_cols=153 Identities=12% Similarity=0.024 Sum_probs=112.4
Q ss_pred cCchHHHHHHHHHhhcCCC------CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSL------NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLH 98 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~ 98 (218)
++++.+.+|..+....... ...+.....+.+||+.+++++.. +.+ +.|.|+++++.+++.++
T Consensus 31 p~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~---------~~~--~~~~g~t~a~~~al~~l- 98 (387)
T PRK09331 31 ILTPEARKALIEYGDGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGM---------DEA--RVTHGAREGKFAVMHSL- 98 (387)
T ss_pred CCCHHHHHHHHHHHhccCCCcccccccccccChHHHHHHHHHHHHhCC---------CcE--EEeCCHHHHHHHHHHHh-
Confidence 5678888887776532111 11122233579999999987632 223 47899999999888876
Q ss_pred HhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC----CCCcEEEEcccCCCCcHH---
Q psy6266 99 RILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA----PDNSVIILHACAHNPTAQ--- 171 (218)
Q Consensus 99 ~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~----~~~~~iil~~~p~NPTG~--- 171 (218)
+.+||+|+++++++.+-...++..|+ +++.++....+.+.+|.+.+++.+++. .++..+++..+|+||||.
T Consensus 99 -~~~gd~Vlv~~~~h~s~~~~~~~~G~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~ 176 (387)
T PRK09331 99 -CKKGDYVVLDGLAHYTSYVAAERAGL-NVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD 176 (387)
T ss_pred -cCCCCEEEECCCchHHHHHHHHHcCC-EEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc
Confidence 67999999999997776666788899 899987621224568999999988642 124455555689999998
Q ss_pred --HHHHHhhcCeEEEeeCCceeec
Q psy6266 172 --QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 172 --~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+|.++|++++++++.| ++|.
T Consensus 177 l~~I~~la~~~g~~livD--~a~~ 198 (387)
T PRK09331 177 AKKVAKVAHEYGIPFLLN--GAYT 198 (387)
T ss_pred HHHHHHHHHHcCCEEEEE--CCcc
Confidence 7999999999999999 7876
|
|
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.3e-12 Score=111.82 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=91.0
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH----HHhCC
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF----LNAGF 125 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~----~~~g~ 125 (218)
..-...|+++++++... +. ++++.||++|+..++.++ ++|||.|++++|+|+.|...+ +..|+
T Consensus 82 ~Pt~~~Le~~lA~leg~---------~~--~iv~~sG~~Ai~~~l~al--~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi 148 (427)
T PRK07049 82 HPNSEIVEDRLAVYEGA---------ES--AALFSSGMSAIATTLLAF--VRPGDVILHSQPLYGGTETLLAKTFRNFGV 148 (427)
T ss_pred CcCHHHHHHHHHHHhCC---------Cc--EEEEccHHHHHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHhcCc
Confidence 44568999999987632 22 358899999999888776 689999999999999997764 45677
Q ss_pred CcceeEeccCCcCccccHHHHHHHHhcC--CCCcEEEEcccCCCCcHH-----HHHHHhhc------CeEEEeeCCceee
Q psy6266 126 TEAREYRYWNPEKRAVDFTGMYEDLVNA--PDNSVIILHACAHNPTAQ-----QVAHMVDK------HHVYLLRSGRINM 192 (218)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~iil~~~p~NPTG~-----~l~~l~~~------~~i~ii~D~r~~y 192 (218)
+++.++. ..|++.+++.+.+. .+++.+++..+|+||||. ++.+++++ ++++++.| +.|
T Consensus 149 -~~v~~~~------~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvD--ety 219 (427)
T PRK07049 149 -GAVGFAD------GLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACD--NTL 219 (427)
T ss_pred -EEEEEeC------CCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEE--CCc
Confidence 6666642 24666676666432 234556666799999998 66677665 78999999 887
Q ss_pred ccC
Q psy6266 193 CGL 195 (218)
Q Consensus 193 ~~l 195 (218)
.+.
T Consensus 220 ~~~ 222 (427)
T PRK07049 220 LGP 222 (427)
T ss_pred ccc
Confidence 653
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.1e-13 Score=103.02 Aligned_cols=94 Identities=12% Similarity=0.046 Sum_probs=72.3
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCC--CCcCCCceEEEEecc
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDAS--PPLREGRAFGVQTLS 85 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~--~~~~~~~v~~~~t~G 85 (218)
++|++.+|. .+++++.+++.+.++...+ ..|++..|.++||+++++++.+ ..+ ..+++++| ++|.|
T Consensus 58 dli~~~i~~--~p~~d~~~~~~i~~~~~~~-------a~Y~~~~G~~~lR~AiA~~l~~-~~g~~v~~~pd~I--vvt~G 125 (153)
T PLN02994 58 DLIEEWIEE--NPHADICTAEGTIDSFKDI-------ALFQDYHGLANFRKAIANFMAE-ARGGRVKFDADMI--VLSAG 125 (153)
T ss_pred HHHHHHHhC--CCccccCCcHHHHHHHHHH-------hcCCCCCCcHHHHHHHHHHHHH-HhCCCCccchhhe--EEcCC
Confidence 556666774 1234566777767665543 2399999999999999999965 544 34667775 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchh
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWEN 115 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~ 115 (218)
+++|+.++++++ ++|||+|++++|+|+.
T Consensus 126 a~~al~~l~~~l--~dpGD~VlVp~P~Y~~ 153 (153)
T PLN02994 126 ATAANEIIMFCI--ADPGDAFLVPTPYYAA 153 (153)
T ss_pred HHHHHHHHHHHH--cCCCCEEEEeCCCCCC
Confidence 999999999887 7899999999999973
|
|
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.9e-12 Score=111.06 Aligned_cols=124 Identities=11% Similarity=0.074 Sum_probs=91.6
Q ss_pred cCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH-
Q psy6266 46 EYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN- 122 (218)
Q Consensus 46 ~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~- 122 (218)
.|. +..+..+|+++++++... .. .+++.+|++|+.+++.++ +++||+|++++|+|+.....+..
T Consensus 54 ~Y~r~~~p~~~~Le~~lA~~~g~-~~----------~i~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~t~~~~~~~ 120 (388)
T PRK07811 54 EYARTGNPTRTALEEQLAALEGG-AY----------GRAFSSGMAATDCLLRAV--LRPGDHIVIPNDAYGGTFRLIDKV 120 (388)
T ss_pred cccCCCCccHHHHHHHHHHHhCC-Cc----------eEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchHHHHHHHHh
Confidence 355 557889999999998743 21 135567789999998877 68999999999999954333332
Q ss_pred ---hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 123 ---AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 123 ---~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
.|+ ++..++. .|++.+++.+. +++.+++..+|+||||. +|.++|+++++++|.| ++|..
T Consensus 121 ~~~~gi-~~~~~d~-------~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD--~a~a~ 187 (388)
T PRK07811 121 FTRWGV-EYTPVDL-------SDLDAVRAAIT---PRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVD--NTFAS 187 (388)
T ss_pred CcCCCe-EEEEeCC-------CCHHHHHHhcC---cCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEE--CCCCc
Confidence 355 4444421 37788887775 34556666799999997 7999999999999999 88864
Q ss_pred C
Q psy6266 195 L 195 (218)
Q Consensus 195 l 195 (218)
.
T Consensus 188 ~ 188 (388)
T PRK07811 188 P 188 (388)
T ss_pred c
Confidence 4
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-11 Score=108.44 Aligned_cols=125 Identities=15% Similarity=0.058 Sum_probs=95.9
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCC-chhHHHHHHHhCCCcceeE
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPT-WENHRLVFLNAGFTEAREY 131 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~-y~~y~~~~~~~g~~~~~~~ 131 (218)
+.++++++++++.. +.+ +++.|+++++..+++++ +.+||.|+++.|. ++.| ..++..|+ +++.+
T Consensus 53 ~~~~~e~lA~~~g~---------~~~--~i~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~h~s~~-~~~~~~g~-~~~~~ 117 (370)
T TIGR02539 53 IHDFLEDLAEFLGM---------DEA--RVTHGAREGKFAVMHAL--CKEGDWVVLDGLAHYTSY-VAAERAGL-NVKEV 117 (370)
T ss_pred HHHHHHHHHHHhCC---------Cce--EEECChHHHHHHHHHHh--hCCCCEEEECCcccHHHH-HHHHHcCC-EEEEE
Confidence 46778887776532 122 36899999999988877 5799999998777 6656 56788999 89999
Q ss_pred eccCCcCccccHHHHHHHHhcCC----CCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 132 RYWNPEKRAVDFTGMYEDLVNAP----DNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 132 ~~~~~~~~~~d~~~~~~~l~~~~----~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+....+.+.+|++.+++.+.+.+ ++..+++.++|+||||. +|.++|++++++++.| ++|..
T Consensus 118 ~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~~~~~livD--ea~~~ 187 (370)
T TIGR02539 118 PHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCREKGVPLLLN--CAYTV 187 (370)
T ss_pred ecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHHcCCeEEEE--Ccccc
Confidence 87533346789999999886321 23445555789999998 7999999999999999 88874
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=109.11 Aligned_cols=126 Identities=16% Similarity=0.153 Sum_probs=93.5
Q ss_pred CcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeE
Q psy6266 52 GLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREY 131 (218)
Q Consensus 52 G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~ 131 (218)
|..++++++.+++.. ..+ .++ ++.|.|+++|+.+++.++. +.|||+|++++|+|+++...+...|+ +++.+
T Consensus 28 g~~~~~~~~e~~la~-~~g----~~~--~v~~~sgt~al~~~l~~~~-~~~Gd~Viv~~~t~~~~~~~~~~~G~-~~v~~ 98 (375)
T PRK11706 28 GDGGFTRRCQQWLEQ-RFG----SAK--VLLTPSCTAALEMAALLLD-IQPGDEVIMPSYTFVSTANAFVLRGA-KIVFV 98 (375)
T ss_pred CCCHHHHHHHHHHHH-HhC----CCe--EEEECCHHHHHHHHHHHhC-CCCCCEEEECCCCcHHHHHHHHHcCC-EEEEE
Confidence 444666666665532 211 134 3588999999988776542 57899999999999999999999999 99999
Q ss_pred eccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 132 RYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 132 ~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.. .+.+.+|++.+++.+.+ ++.+++. .||||. +|.++|++++++||+| .+++..
T Consensus 99 d~d-~~~~~~d~~~le~~i~~---~tk~i~~---~~~~G~~~~~~~i~~la~~~~i~vIeD--~a~a~g 158 (375)
T PRK11706 99 DIR-PDTMNIDETLIEAAITP---KTRAIVP---VHYAGVACEMDTIMALAKKHNLFVVED--AAQGVM 158 (375)
T ss_pred ecC-CCcCCcCHHHHHHhcCC---CCeEEEE---eCCCCCccCHHHHHHHHHHcCCEEEEE--Cccccc
Confidence 873 44467899999888753 3444442 357885 7999999999999999 776543
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.3e-11 Score=109.47 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH----HHHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL----VFLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~----~~~~~g~~~~ 128 (218)
..+|++.++++.-. +. +++|.||++|+.+++.++ +.+||+|+++++.|++... .++..|+ ++
T Consensus 63 ~~~le~~la~l~g~---------~~--~v~~ssG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~-~v 128 (390)
T PRK08133 63 VTMFQERLAALEGA---------EA--CVATASGMAAILAVVMAL--LQAGDHVVSSRSLFGSTVSLFEKIFARFGI-ET 128 (390)
T ss_pred HHHHHHHHHHHhCC---------Cc--EEEECCHHHHHHHHHHHH--hCCCCEEEEccCcchhHHHHHHHHHHHcCc-EE
Confidence 56888888876532 22 358899999999888776 6799999999998876443 4556788 78
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+.++.. |.+.+++.+. +++++++..+|+||||. +|.++|+++++++|.| ++|..
T Consensus 129 ~~vd~~-------d~~~l~~~i~---~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD--~t~~~ 187 (390)
T PRK08133 129 TFVDLT-------DLDAWRAAVR---PNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVD--NCFCT 187 (390)
T ss_pred EEECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEE--CCCcc
Confidence 777541 5677777774 34556666789999997 7999999999999999 77643
|
|
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.7e-11 Score=107.57 Aligned_cols=158 Identities=10% Similarity=0.053 Sum_probs=111.4
Q ss_pred EEeCCCCCccCchHHHHHHHHHhh--c-CCCCcc------CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 16 AYRTEECKPWVLPVVRQAEKELAA--D-DSLNHE------YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 16 ~~~~~~~~~~~~~~v~~a~~~~~~--~-~~~~~~------Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
+|-|..+..++++.|.++..+... . ....+. +.....+.++|+.+++++ + .+++++ +.|.|+
T Consensus 5 iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~-g------~~~~~v--~~~~g~ 75 (404)
T PRK14012 5 IYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLI-G------ADPREI--VFTSGA 75 (404)
T ss_pred EEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHc-C------cCcCeE--EEeCCH
Confidence 455555656788899998766553 1 011111 111134677888888765 3 233444 588999
Q ss_pred hhHHHHHHHHHHH--hcCCCeEEecCCCchhHHHHHHH---hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 87 TGALRVGAEFLHR--ILNYTTFYYSKPTWENHRLVFLN---AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 87 ~~al~~~~~~l~~--l~~gd~V~i~~P~y~~y~~~~~~---~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
++++.+++.++.. +.+||+|+++++.|++....++. .|+ +++.++.. +.+.+|.+.+++.+. +++.+++
T Consensus 76 t~al~~~l~~l~~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~-~~~~v~~~--~~g~~d~~~l~~~i~---~~t~lv~ 149 (404)
T PRK14012 76 TESDNLAIKGAAHFYQKKGKHIITSKTEHKAVLDTCRQLEREGF-EVTYLDPQ--SNGIIDLEKLEAAMR---DDTILVS 149 (404)
T ss_pred HHHHHHHHHHHHHhhcCCCCEEEEecCccHHHHHHHHHHHhCCC-EEEEEccC--CCCcCCHHHHHHhcC---CCCEEEE
Confidence 9999988776532 35799999999999887654443 588 88888762 345679999988885 3455666
Q ss_pred cccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 162 HACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 162 ~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
...++||||. +|.++|++++++++.|+
T Consensus 150 ~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~ 181 (404)
T PRK14012 150 IMHVNNEIGVIQDIAAIGEICRERGIIFHVDA 181 (404)
T ss_pred EECcCCCccchhhHHHHHHHHHHcCCEEEEEc
Confidence 6789999998 79999999999999993
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=105.57 Aligned_cols=125 Identities=14% Similarity=0.127 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh----cCCCeEEecCCCchhHHHHHHHhCCCcce
Q psy6266 54 ESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI----LNYTTFYYSKPTWENHRLVFLNAGFTEAR 129 (218)
Q Consensus 54 ~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l----~~gd~V~i~~P~y~~y~~~~~~~g~~~~~ 129 (218)
.++|+.+++++ + .+++.+ +++.|+++++.+++.++..+ .+||+|++++|.|.+|...++..|+ +++
T Consensus 62 ~~~~~~la~~~-g------~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~g~~vl~~~~~h~~~~~~~~~~G~-~~~ 131 (373)
T TIGR03812 62 EEVVGSLGNLL-H------LPDAYG--YIVSGGTEANIQAVRAAKNLAREEKRTPNIIVPESAHFSFEKAAEMLGL-ELR 131 (373)
T ss_pred HHHHHHHHHHh-C------CCCCCe--EEeccHHHHHHHHHHHHHHHHhccCCCcEEEECCcchHHHHHHHHHcCC-eEE
Confidence 45666666554 3 222333 47889999988776655322 3679999999999999998999999 899
Q ss_pred eEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 130 EYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 130 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.++.. +.+.+|++.+++.+.+ ++..++..+|+||||. +|.++|++++++++.| ++|.++
T Consensus 132 ~v~~~--~~~~~d~~~l~~~l~~---~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD--~a~~~~ 195 (373)
T TIGR03812 132 YAPLD--EDYTVDVKDVEDLIDD---NTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVD--AAFGGF 195 (373)
T ss_pred EEeeC--CCCCcCHHHHHHHHhh---CcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEE--cCchhH
Confidence 88872 3456799999988853 2332333357999998 8999999999999999 788643
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2e-11 Score=107.39 Aligned_cols=156 Identities=12% Similarity=0.054 Sum_probs=106.5
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCC------CcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVL------GLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGAL 90 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~------G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al 90 (218)
|-|..+..++++.|.+|+.+..++.....+..... =+.++|+.+++++. .++++| +.|.|+++++
T Consensus 3 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g-------~~~~~i--~~~~g~t~a~ 73 (381)
T PRK02948 3 YLDYAATTPMSKEALQTYQKAASQYFGNESSLHDIGGTASSLLQVCRKTFAEMIG-------GEEQGI--YFTSGGTESN 73 (381)
T ss_pred eccCCCCCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHhC-------CCCCeE--EEeCcHHHHH
Confidence 33444545678899999877664311111111111 14577788877653 234554 5889999999
Q ss_pred HHHHHHHHH--hcCCCeEEecCCCchhHH---HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 91 RVGAEFLHR--ILNYTTFYYSKPTWENHR---LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 91 ~~~~~~l~~--l~~gd~V~i~~P~y~~y~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
..+++++.. ..+||.|+++++.|+++. ..++..|+ +++.++.. +.+.+|++.+++.+. +++.+++..+|
T Consensus 74 ~~~~~~~~~~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~-~v~~v~~~--~~~~~d~~~l~~~l~---~~~~lv~~~~~ 147 (381)
T PRK02948 74 YLAIQSLLNALPQNKKHIITTPMEHASIHSYFQSLESQGY-TVTEIPVD--KSGLIRLVDLERAIT---PDTVLASIQHA 147 (381)
T ss_pred HHHHHHHHHhccCCCCEEEECCcccHHHHHHHHHHHhCCC-EEEEEeeC--CCCCCCHHHHHHhcC---CCCEEEEEECC
Confidence 888776632 146899999996666554 44566788 88888763 235679999988775 34556666789
Q ss_pred CCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 166 HNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
+||||. +|.++|++++++++.|
T Consensus 148 ~n~tG~~~~~~~I~~l~~~~~~~vivD 174 (381)
T PRK02948 148 NSEIGTIQPIAEIGALLKKYNVLFHSD 174 (381)
T ss_pred cCCcEeehhHHHHHHHHHHcCCEEEEE
Confidence 999998 7899999999999999
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.9e-12 Score=110.62 Aligned_cols=116 Identities=16% Similarity=0.167 Sum_probs=84.7
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchh----HHHHHHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWEN----HRLVFLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~----y~~~~~~~g~~~~ 128 (218)
..+|++.++++... ++. +++.+|++|+.++++++ +.|||+|+++.|.|+. +....+..|. ++
T Consensus 62 ~~~Le~~lA~l~g~--------~~~---v~~~sG~~Ai~~~l~al--l~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~-~v 127 (405)
T PRK08776 62 RDLLGEALAELEGG--------AGG---VITATGMGAINLVLNAL--LQPGDTLVVPHDAYGGSWRLFNALAKKGHF-AL 127 (405)
T ss_pred HHHHHHHHHHHhCC--------Cce---EEEcCHHHHHHHHHHHH--hCCCCEEEEccCCchHHHHHHHHHHHhcCc-EE
Confidence 45677777765422 122 46777789999988877 6899999999999997 3344444565 55
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+.++. .|++.+++.+. +++.+++.++||||||. +|.++|+++++++|.| ++|..
T Consensus 128 ~~v~~-------~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD--~a~a~ 186 (405)
T PRK08776 128 ITADL-------TDPRSLADALA---QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVD--NTFLS 186 (405)
T ss_pred EEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEE--CCCcc
Confidence 55532 36777877774 34455666799999998 7899999999999999 88863
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.3e-11 Score=105.26 Aligned_cols=130 Identities=5% Similarity=-0.074 Sum_probs=97.7
Q ss_pred CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCC
Q psy6266 47 YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT 126 (218)
Q Consensus 47 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~ 126 (218)
+.|..=+.++++.+++++ + . ++. .++|.|+++++..++.++ +.|||+|++++|+|.+....+...|+
T Consensus 55 ~~~~g~i~~~~~~~A~~~-g-a-------~~~-~~~~~Gst~a~~~~l~al--~~~gd~Vlv~~~~h~s~~~~~~~~g~- 121 (294)
T cd00615 55 LDPTGPIKEAQELAARAF-G-A-------KHT-FFLVNGTSSSNKAVILAV--CGPGDKILIDRNCHKSVINGLVLSGA- 121 (294)
T ss_pred CCCChHHHHHHHHHHHHh-C-C-------CCE-EEEcCcHHHHHHHHHHHc--CCCCCEEEEeCCchHHHHHHHHHCCC-
Confidence 334433778888888765 3 2 222 356899999998888776 68999999999999999988999999
Q ss_pred cceeEeccCCcC----ccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 127 EAREYRYWNPEK----RAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 127 ~~~~~~~~~~~~----~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.++....+. ..+|.+.+++.+++. ++..+++.++| ||||. +|.++|++++++++.| +++.
T Consensus 122 ~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livD--eA~~ 193 (294)
T cd00615 122 VPVYLKPERNPYYGIAGGIPPETFKKALIEH-PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVD--EAHG 193 (294)
T ss_pred EEEEecCccCcccCcCCCCCHHHHHHHHHhC-CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEE--Ccch
Confidence 888876522221 257999999998653 23344444567 79997 7999999999999999 8875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >KOG1412|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=3e-13 Score=113.41 Aligned_cols=162 Identities=23% Similarity=0.366 Sum_probs=114.5
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHH--HHHHHHHHHhcCCCeEEecCCCchhHHHHHHH
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGAL--RVGAEFLHRILNYTTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al--~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~ 122 (218)
-+|+...|++.|..+...+.|| ++.||+..+..++...+. .+.+|+.. + -+.-+..+|.|+. .++..
T Consensus 235 iR~fV~~g~e~fv~QSFaKNfG------lYneRvGnltvv~~n~a~i~~v~SQl~l-v--iR~~~SNPPAyGA--rIV~k 303 (410)
T KOG1412|consen 235 IRYFVEQGFELFVCQSFAKNFG------LYNERVGNLTVVVNNPAVIAGVKSQLTL-V--IRSNWSNPPAYGA--RIVHK 303 (410)
T ss_pred HHHHHhcCCeEEEEhhhhhhcc------cccccccceEEEecChhHHHHHHHHHHH-H--HhhccCCCcchhh--HHHHH
Confidence 3677788999999999999998 666777655444443332 23344321 2 2444677888776 34444
Q ss_pred hCCCcceeEeccCCcCccc--cHHHHHHHHhcC-----CCCc--EEEEc---ccCCCCcHHHHHHHhhcCeEEEeeCCce
Q psy6266 123 AGFTEAREYRYWNPEKRAV--DFTGMYEDLVNA-----PDNS--VIILH---ACAHNPTAQQVAHMVDKHHVYLLRSGRI 190 (218)
Q Consensus 123 ~g~~~~~~~~~~~~~~~~~--d~~~~~~~l~~~-----~~~~--~iil~---~~p~NPTG~~l~~l~~~~~i~ii~D~r~ 190 (218)
. +++|.....|..+-..+ ++..|+.+|+.. ++++ +|+-| +|+..-|-.|+..+.++|+||+++|||+
T Consensus 304 v-L~tP~lre~W~~sik~MssRI~~MR~aLrd~L~aL~TPGtWDHI~~QiGMFSyTGLtp~qV~~li~~h~vyLl~~GRI 382 (410)
T KOG1412|consen 304 V-LSTPELREQWIQSIKTMSSRIKKMRTALRDHLVALKTPGTWDHITQQIGMFSYTGLTPAQVDHLIENHKVYLLSDGRI 382 (410)
T ss_pred H-hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHhhccceeecCCCHHHHHHHHHhceEEEecCCcE
Confidence 4 44788887886654444 777788777642 4553 33332 2444555569999999999999999999
Q ss_pred eeccCCCCCHHHHHHHHHHHHHcCCCCC
Q psy6266 191 NMCGLTTQNLDHVAQAIHDAVTSIPSHL 218 (218)
Q Consensus 191 ~y~~l~~~ni~~~~~a~~~~~~~~~~~~ 218 (218)
+.+|++-+|+||+|+||+++||..++|.
T Consensus 383 nisGLN~~NveyVAkAIde~Vr~~~~~~ 410 (410)
T KOG1412|consen 383 NISGLNMKNVEYVAKAIDETVRAIKSNA 410 (410)
T ss_pred eeeccccccHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999999999998873
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.6e-11 Score=108.74 Aligned_cols=124 Identities=11% Similarity=0.104 Sum_probs=89.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH-hCCCc
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN-AGFTE 127 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~-~g~~~ 127 (218)
+......|+++++++..+ +. +++|.|+++|+.+++.++ +.|||+|++++|+|+.....+.. ... .
T Consensus 50 ~~pt~~~L~~~lA~l~g~---------~~--~i~~~sg~~Ai~~~l~~l--~~~GD~Vl~~~~~y~~~~~~~~~~~~~-~ 115 (386)
T PRK08045 50 GNPTRDVVQRALAELEGG---------AG--AVLTNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKR-G 115 (386)
T ss_pred CCccHHHHHHHHHHHhCC---------Ce--EEEECCHHHHHHHHHHHH--cCCCCEEEEcCCCcHHHHHHHHHHHhh-C
Confidence 345678999999987532 12 468999999999988876 68999999999999964433332 211 1
Q ss_pred ceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 128 AREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 128 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.+.+...+ ..|.+.+++.+. +++.+++.++|+||||. +|.++|+++++++|.| ++|...
T Consensus 116 gi~v~~vd----~~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivD--eay~~~ 179 (386)
T PRK08045 116 CYRVLFVD----QGDEQALRAALA---EKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVD--NTFLSP 179 (386)
T ss_pred CeEEEEeC----CCCHHHHHHhcc---cCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE--CCCCcc
Confidence 12222222 247788887774 34455566899999997 7999999999999999 888754
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.9e-11 Score=107.14 Aligned_cols=177 Identities=11% Similarity=0.028 Sum_probs=112.7
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC-CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL-NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
+...|...||+..|...+.-| ...+.|.+|..+.+++... ...| +..-..+|.+.+++++ + . ++ +
T Consensus 22 ~~~~g~~~id~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g------~--~~--~ 87 (379)
T TIGR00707 22 YDVNGKEYLDFVAGIAVNSLG--HAHPKLVEALKEQLEKLVHVSNLY-YTEPQEELAEKLVEHS-G------A--DR--V 87 (379)
T ss_pred EeCCCCEEEEcCcchhhccCC--CCCHHHHHHHHHHHhhcccccccc-CCHHHHHHHHHHHhhC-C------C--CE--E
Confidence 346788899999986655666 3568888887776643111 1223 2222344444444432 2 1 23 4
Q ss_pred EEeccChhHHHHHHHHHHHh-c----CCCeEEecCCCchhHHHHHHHhCCCccee----EeccCCcCcc--ccHHHHHHH
Q psy6266 81 VQTLSGTGALRVGAEFLHRI-L----NYTTFYYSKPTWENHRLVFLNAGFTEARE----YRYWNPEKRA--VDFTGMYED 149 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l-~----~gd~V~i~~P~y~~y~~~~~~~g~~~~~~----~~~~~~~~~~--~d~~~~~~~ 149 (218)
+.+.||++|+.++++++... . ++|+|++++|+|..|.......++ .+.. .+...+..+. .|++.+++.
T Consensus 88 ~~~~sg~~a~~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 166 (379)
T TIGR00707 88 FFCNSGAEANEAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATG-QPKYQKGFEPLVPGFSYAPYNDIESLKKA 166 (379)
T ss_pred EEeCCcHHHHHHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcC-ChhhhccCCCCCCCceeeCCCCHHHHHHH
Confidence 68899999999988765322 2 379999999999988876666665 4322 1221110111 177888877
Q ss_pred HhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.+ +..+++.+..+||+|. +|.++|+++++++|.| ++|.++.+.
T Consensus 167 ~~~---~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~D--e~~~~~~~~ 219 (379)
T TIGR00707 167 IDD---ETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFD--EVQTGIGRT 219 (379)
T ss_pred hhh---CeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCcc
Confidence 753 3344444555666663 6889999999999999 999987654
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-11 Score=110.73 Aligned_cols=167 Identities=10% Similarity=-0.023 Sum_probs=114.0
Q ss_pred CCCCceeeeeeeEEeCCC-CCccCchHHHHHHHHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEE-CKPWVLPVVRQAEKELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~-~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..+...|||+-=.|-... .++.+.+.+.+|..+.-.. ....+.|....+..+|++++|+++.. ++.+ +
T Consensus 97 ~~~~~~~n~~s~~YLgl~~~~~~~~~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~--------~~ai--~ 166 (489)
T PLN02483 97 TKTRRCLNLGSYNYLGFAAADEYCTPRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGK--------PAAI--V 166 (489)
T ss_pred CCCceEEEeecCCccCcCCCCHHHHHHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCC--------CcEE--E
Confidence 345678898877765443 2344566777776554311 02234588899999999999998743 2222 3
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC----CC--
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA----PD-- 155 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~----~~-- 155 (218)
.+.| ..+...++.++ +.|||+|++++|+|+++...++..|+ +++.++.. |.+.+++.|++. .+
T Consensus 167 ~~~G-~~an~~~i~al--~~~Gd~Vi~d~~~h~s~~~~~~~~Ga-~v~~~~~~-------d~~~le~~l~~~i~~~~p~t 235 (489)
T PLN02483 167 FGMG-YATNSTIIPAL--IGKGGLIISDSLNHNSIVNGARGSGA-TIRVFQHN-------TPSHLEEVLREQIAEGQPRT 235 (489)
T ss_pred ECCH-HHHHHHHHHHh--CCCCCEEEEcchhhHHHHHHHHHcCC-eEEEEeCC-------CHHHHHHHHHhhhhcccccc
Confidence 4554 44444555555 68999999999999999999999999 88888642 233333333321 11
Q ss_pred ----CcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 156 ----NSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 156 ----~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.++++.....|++|. +|.++|+++++++|.| ++|+
T Consensus 236 ~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~livD--Ea~s 280 (489)
T PLN02483 236 HRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYVYLD--EAHS 280 (489)
T ss_pred ccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEEEEE--CcCc
Confidence 2345665666799986 8999999999999999 8886
|
|
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.6e-11 Score=107.70 Aligned_cols=154 Identities=10% Similarity=-0.047 Sum_probs=108.0
Q ss_pred CCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhc
Q psy6266 22 CKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRIL 101 (218)
Q Consensus 22 ~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~ 101 (218)
|...+++.|++|+.+-. ..|. +.+.+++++++.+++.. ..+ ...+++ ++++.++++++..++..+ ++
T Consensus 16 GP~~~~~~V~~a~~~~~------~~~~-~~~~~~~~~~~~~~l~~-~~g--~~~~~~-vi~~~~gt~a~~~a~~~~--~~ 82 (401)
T PLN02409 16 GPVNIPERVLRAMNRPN------EDHR-SPAFPALTKELLEDVKY-IFK--TKSGTP-FIFPTTGTGAWESALTNT--LS 82 (401)
T ss_pred CCCCCCHHHHHHhcCCC------CCCC-CHHHHHHHHHHHHHHHH-HhC--CCCCCE-EEEeCCcHHHHHHHHHhc--CC
Confidence 34567888888754321 1122 55778888888776633 222 223333 467778899988877655 68
Q ss_pred CCCeEEecCCCchhH--HHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC-CCcEEEEcccCCCCcHH-----HH
Q psy6266 102 NYTTFYYSKPTWENH--RLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP-DNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 102 ~gd~V~i~~P~y~~y--~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~~iil~~~p~NPTG~-----~l 173 (218)
|||+|++++|.|+++ ..+++..|+ +++.++.. . ...++++.+++.+++.+ +++.+++.+.++||||. +|
T Consensus 83 ~Gd~Vlv~~~~~~~~~~~~~~~~~g~-~v~~v~~~-~-~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~~~~i 159 (401)
T PLN02409 83 PGDKVVSFRIGQFSLLWIDQMQRLNF-DVDVVESP-W-GQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTNDLAGV 159 (401)
T ss_pred CCCEEEEeCCCchhHHHHHHHHHcCC-ceEEEECC-C-CCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCCHHHH
Confidence 999999999988766 356777898 89988763 2 23578999999887421 24455555678999998 68
Q ss_pred HHH--hhcCeEEEeeCCceeec
Q psy6266 174 AHM--VDKHHVYLLRSGRINMC 193 (218)
Q Consensus 174 ~~l--~~~~~i~ii~D~r~~y~ 193 (218)
.++ |++++++++.| .+++
T Consensus 160 ~~l~~~~~~g~~~vvD--~v~s 179 (401)
T PLN02409 160 RKLLDCAQHPALLLVD--GVSS 179 (401)
T ss_pred HHHHhhhccCcEEEEE--cccc
Confidence 888 99999999999 5543
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.4e-11 Score=106.14 Aligned_cols=157 Identities=12% Similarity=0.105 Sum_probs=109.6
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCCC-cc------CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSLN-HE------YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGA 89 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~------Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~a 89 (218)
|-|..+..++++.|.++..+..+..... +. +.....++++|+.+++++ + .++++| +.|.|++++
T Consensus 6 yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-g------~~~~~v--~~~~g~t~a 76 (402)
T TIGR02006 6 YLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELI-G------ADSREI--VFTSGATES 76 (402)
T ss_pred EeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHh-C------CCCCeE--EEeCCHHHH
Confidence 4444444577889999876655321111 11 111234677788888765 3 234454 588999999
Q ss_pred HHHHHHHHHH--hcCCCeEEecCCCchhHHHHH---HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 90 LRVGAEFLHR--ILNYTTFYYSKPTWENHRLVF---LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 90 l~~~~~~l~~--l~~gd~V~i~~P~y~~y~~~~---~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+.+++.++.. ..+||+|+++++.|+++...+ +..|+ +++.++.. +.+.+|.+.+++.+. +++.+++.++
T Consensus 77 ~~~~l~~l~~~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~-~v~~v~~~--~~~~~d~~~l~~~l~---~~~~lv~v~~ 150 (402)
T TIGR02006 77 NNLAIKGIAHFYKSKGNHIITSKTEHKAVLDTCRYLEREGF-EVTYLPPK--SNGLIDLEELKAAIR---DDTILVSIMH 150 (402)
T ss_pred HHHHHHHHHHhhcCCCCEEEECCCccHHHHHHHHHHHhcCC-EEEEEccC--CCCcCCHHHHHHhcC---CCCEEEEEEC
Confidence 9988766532 257999999999999866544 34588 88888763 345679999988875 3355666678
Q ss_pred CCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 165 AHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
++||||. +|.++|++++++++.|+
T Consensus 151 ~~n~tG~~~~~~~I~~l~~~~g~~livD~ 179 (402)
T TIGR02006 151 VNNEIGVIQDIAAIGEICRERKVFFHVDA 179 (402)
T ss_pred CCcCceecccHHHHHHHHHHcCCEEEEEc
Confidence 9999998 79999999999999993
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=109.37 Aligned_cols=123 Identities=12% Similarity=0.034 Sum_probs=90.6
Q ss_pred ccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH----
Q psy6266 45 HEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL---- 118 (218)
Q Consensus 45 ~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~---- 118 (218)
..|+- .....+|+++++++... +. ++.|.|+++|+.+++.++ +.|||+|++++|+|+.+..
T Consensus 57 ~~Y~r~~~pt~~~Le~~lA~l~g~---------~~--~l~~~sgt~Ai~~~l~al--~~~GD~Vl~~~~~y~~~~~~~~~ 123 (394)
T PRK07050 57 WRYGLHATPTSLALAQRLAEIEGG---------RH--ALLQPSGLAAISLVYFGL--VKAGDDVLIPDNAYGPNRDHGEW 123 (394)
T ss_pred cccCCCCCHHHHHHHHHHHHHhCC---------Ce--EEEeccHHHHHHHHHHHH--hCCCCEEEEecCCcccHHHHHHH
Confidence 34544 33456777777765422 23 468999999999999877 6899999999999998764
Q ss_pred HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 119 VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 119 ~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
..+..|+ ++..++. . +.+.+++.++ +++.+++.++|+||||. +|.++|++++++++.| ++|.
T Consensus 124 ~~~~~Gi-~v~~vd~---~----~~~~l~~~i~---~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD--~a~a 190 (394)
T PRK07050 124 LARDFGI-TVRFYDP---L----IGAGIADLIQ---PNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAID--NTYS 190 (394)
T ss_pred HHHhcCe-EEEEECC---C----CHHHHHHhcC---CCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEE--CCcc
Confidence 4456687 7776632 1 2345666554 45566677899999997 7889999999999999 7775
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=108.25 Aligned_cols=122 Identities=10% Similarity=0.086 Sum_probs=91.6
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhC
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAG 124 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g 124 (218)
+..-..+|++.++++.-+ +. .+++.+|+.|+.+++.++ +.|||+|++++|.|++.... ++..|
T Consensus 62 ~~p~~~~le~~lA~l~g~---------~~--~i~~ssG~~Ai~~~l~al--l~~GD~Vi~~~~~y~~~~~~~~~~~~~~G 128 (398)
T PRK08249 62 TNPTVQAFEEKVRILEGA---------EA--ATAFSTGMAAISNTLYTF--LKPGDRVVSIKDTYGGTNKIFTEFLPRMG 128 (398)
T ss_pred CChHHHHHHHHHHHHhCC---------Ce--EEEeCChHHHHHHHHHHh--cCCCCEEEEcCCchHHHHHHHHHHHhhCC
Confidence 344568899999887633 22 357788899999888766 67999999999999986543 34556
Q ss_pred CCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 125 FTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+ ++..++ ..|++.+++.++ +++.+++..+|+||||. +|.++|+++++++|.| ++|....
T Consensus 129 i-~v~~vd-------~~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD--~t~a~~~ 192 (398)
T PRK08249 129 V-DVTLCE-------TGDHEQIEAEIA---KGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVD--NTFATPI 192 (398)
T ss_pred e-EEEEcC-------CCCHHHHHHhcC---CCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEE--CCcCccc
Confidence 6 555442 247888888875 34556666789999997 8999999999999999 8887543
|
|
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.6e-11 Score=103.41 Aligned_cols=151 Identities=13% Similarity=0.066 Sum_probs=104.6
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcC
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILN 102 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~ 102 (218)
...+++.|++++...... ....|. .-...+|+.+++++.. +++.+.+++|.|+++++..++..+ +.+
T Consensus 7 p~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~la~~~~~-------~~~~~~i~~~~~gt~~l~~~~~~~--~~~ 73 (355)
T TIGR03301 7 PLSTSATVRDAMLVDWCH--WDSEFN--DVTDQVRDRLLALAGG-------DDNHTCVLLQGSGTFAVEATIGSL--VPR 73 (355)
T ss_pred CCCCCHHHHHHhhhhccC--CCHHHH--HHHHHHHHHHHHHhcC-------CCCCcEEEEeCCcHHHHHHHHHhc--cCC
Confidence 356788899887663211 112343 3357788888886643 223233457889999999988876 567
Q ss_pred CCeEEec-CCCchh-HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHH
Q psy6266 103 YTTFYYS-KPTWEN-HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAH 175 (218)
Q Consensus 103 gd~V~i~-~P~y~~-y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~ 175 (218)
+|+|++. +++|+. +...++..|+ +++.++. .+...+|++.+++.+++. ++..+++.+.++||||. +|.+
T Consensus 74 ~~~vi~~~~~~~~~~~~~~a~~~g~-~~~~i~~--~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~~~~~i~~ 149 (355)
T TIGR03301 74 DGKLLVLINGAYGERLAKICEYLGI-PHTDLNF--SEYEPPDLNRIEEALAAD-PDITHVATVHHETTTGILNPLEAIAK 149 (355)
T ss_pred CCeEEEECCCchhhHHHHHHHHcCC-ceEEEec--CCCCCCCHHHHHHHHHhC-CCceEEEEEecCCcccchhHHHHHHH
Confidence 8876654 555665 5567788898 8888876 224578999999988753 33344444568899998 7999
Q ss_pred HhhcCeEEEeeCCceee
Q psy6266 176 MVDKHHVYLLRSGRINM 192 (218)
Q Consensus 176 l~~~~~i~ii~D~r~~y 192 (218)
+|++|+++++.| ..+
T Consensus 150 l~~~~~~~livD--~~~ 164 (355)
T TIGR03301 150 VARSHGAVLIVD--AMS 164 (355)
T ss_pred HHHHcCCEEEEE--ecc
Confidence 999999999999 544
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=110.28 Aligned_cols=161 Identities=12% Similarity=0.004 Sum_probs=110.1
Q ss_pred eeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccC---cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChh
Q psy6266 12 EIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEY---LPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTG 88 (218)
Q Consensus 12 l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y---~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~ 88 (218)
+++|.+ ...+++.|.++....... ...|.| ..++|..+++.++.+++.. ..+. + ++....+.|+++
T Consensus 73 ~g~G~~-----~~~~~p~i~~~~~~~~~~-~~~tpYq~e~~sqG~lel~~~~~~~la~-l~G~--~--~~~l~~~~GA~a 141 (481)
T PRK04366 73 YPLGSC-----TMKYNPKINEKVARLPGF-AELHPLQPEETVQGALELMYELQEWLKE-ITGM--D--AVTLQPAAGAHG 141 (481)
T ss_pred ecCccc-----CCCCCHHHHHHHHhCcch-hcCCCCCChhhhhHHHHHHHHHHHHHHH-HhCC--C--ceEEEeCcHHHH
Confidence 566643 346678888776553211 245678 5688999999999988854 3332 2 333334455555
Q ss_pred HHHHHHHHH-HHhcCCC----eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 89 ALRVGAEFL-HRILNYT----TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 89 al~~~~~~l-~~l~~gd----~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.+..++.+. ..+++|| +|++++|.|+.|...++..|+ +++.+++ + +.+.+|++.+++.+.. ++.+++.+
T Consensus 142 ~~~~l~~~r~~~~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~-~vv~v~~-~-~~~~~D~e~L~~~i~~---~t~~V~v~ 215 (481)
T PRK04366 142 ELTGLLMIRAYHEARGDTKRTEVIVPDSAHGTNPASAAMAGF-KVVEIPS-N-EDGLVDLEALKAAVGE---DTAALMLT 215 (481)
T ss_pred HHHHHHHHHHHhhccCcCCCCEEEEcCCccHhHHHHHHHcCC-EEEEeec-C-CCCCcCHHHHHhhccc---CCeEEEEe
Confidence 544322111 1146777 999999999999999999999 9999987 2 3467899999888753 34444445
Q ss_pred cCCCCcHH------HHHHHhhcCeEEEeeCCceee
Q psy6266 164 CAHNPTAQ------QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 164 ~p~NPTG~------~l~~l~~~~~i~ii~D~r~~y 192 (218)
+|+ |||. +|+++|++++.+++.| .+.
T Consensus 216 ~Pn-~tG~~~~dl~eI~~~a~~~gal~iVD--~a~ 247 (481)
T PRK04366 216 NPN-TLGLFERNILEIAEIVHEAGGLLYYD--GAN 247 (481)
T ss_pred CCC-CccccchHHHHHHHHHHHcCCEEEEE--ecC
Confidence 676 9997 5778899999999999 553
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-11 Score=92.93 Aligned_cols=131 Identities=16% Similarity=0.095 Sum_probs=95.1
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH-HHHHHhCCCcceeE
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR-LVFLNAGFTEAREY 131 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~-~~~~~~g~~~~~~~ 131 (218)
+.++++.+++++.. ..+++ +++.|+++|+.++++++ ..++++|++++|.|+++. ..++..|+ +++.+
T Consensus 2 ~~~~~~~l~~~~~~-------~~~~~--~~~~~~t~a~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~g~-~~~~v 69 (170)
T cd01494 2 LEELEEKLARLLQP-------GNDKA--VFVPSGTGANEAALLAL--LGPGDEVIVDANGHGSRYWVAAELAGA-KPVPV 69 (170)
T ss_pred HHHHHHHHHHHcCC-------CCCcE--EEeCCcHHHHHHHHHHh--CCCCCEEEEeecccceehhhHHHhcCC-EEEEe
Confidence 35788888877621 22343 47779999999999887 467999999999999998 78888898 88888
Q ss_pred eccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 132 RYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 132 ~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+.........+++.+++... .++..+++.+.++||+|. ++.++|++++++++.| ++|..+....
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D--~a~~~~~~~~ 138 (170)
T cd01494 70 PVDDAGYGGLDVAILEELKA--KPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVD--AASAGGASPA 138 (170)
T ss_pred ccCCCCccchhhhhhhhccc--cCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEe--cccccccccc
Confidence 76432211123324433222 234455666778999996 7999999999999999 8888766653
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.2e-11 Score=103.39 Aligned_cols=155 Identities=11% Similarity=0.096 Sum_probs=106.7
Q ss_pred CCCCCccCchHHHHHHHHHhhcCCCCccCcCC---------CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhH
Q psy6266 19 TEECKPWVLPVVRQAEKELAADDSLNHEYLPV---------LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGA 89 (218)
Q Consensus 19 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~---------~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~a 89 (218)
|..+..++++.|.+|..+...+ ...|... .-+.++|+.+++++ + .++++| +.|.|++++
T Consensus 4 d~aa~~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-g------~~~~~i--~~t~~~t~a 71 (379)
T TIGR03402 4 DNNATTRVDPEVLEAMLPYFTE---YFGNPSSMHSFGGEVGKAVEEAREQVAKLL-G------AEPDEI--IFTSGGTES 71 (379)
T ss_pred CCcCCCCCCHHHHHHHHHHHHh---cCCCCCcccHHHHHHHHHHHHHHHHHHHHh-C------CCCCeE--EEeCcHHHH
Confidence 3344457788999998776543 1112111 12456777777665 3 234554 588999999
Q ss_pred HHHHHHHHHH-hcCCCeEEecCCCchhHHHHH---HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 90 LRVGAEFLHR-ILNYTTFYYSKPTWENHRLVF---LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 90 l~~~~~~l~~-l~~gd~V~i~~P~y~~y~~~~---~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+.+++.++.. ..+||+|++.+..|+++.... +..|. +++.++.. +.+.+|.+.+++.+. +++.+++.+.+
T Consensus 72 ~~~al~~~~~~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~-~v~~v~~~--~~g~~~~~~l~~~i~---~~~~lv~i~~~ 145 (379)
T TIGR03402 72 DNTAIKSALAAQPEKRHIITTAVEHPAVLSLCQHLEKQGY-KVTYLPVD--EEGRLDLEELRAAIT---DDTALVSVMWA 145 (379)
T ss_pred HHHHHHHHHHhcCCCCeEEEcccccHHHHHHHHHHHHcCC-EEEEEccC--CCCcCCHHHHHHhcC---CCcEEEEEEcc
Confidence 9988776522 235789999998888765433 34588 88888762 234679999988885 34566666789
Q ss_pred CCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 166 HNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+||||. +|.++|++++++++.| .++.
T Consensus 146 ~n~tG~~~~~~~I~~l~~~~g~~vivD--~~~~ 176 (379)
T TIGR03402 146 NNETGTIFPIEEIGEIAKERGALFHTD--AVQA 176 (379)
T ss_pred cCCeeecccHHHHHHHHHHcCCEEEEE--Cccc
Confidence 999998 7999999999999999 5543
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-11 Score=107.12 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=89.3
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH----HHhCC
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF----LNAGF 125 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~----~~~g~ 125 (218)
..-...|+++++++..+ +. +++|.|+++|+.++++++ +.+||+|++++|+|+.....+ ...|.
T Consensus 52 npt~~~Le~~lA~leg~---------e~--ivvt~gg~~Ai~~~l~al--l~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi 118 (388)
T PRK08861 52 NPNRGLLEQTLSELESG---------KG--AVVTNCGTSALNLWVSAL--LGPDDLIVAPHDCYGGTYRLFNTRANKGDF 118 (388)
T ss_pred CchHHHHHHHHHHHhCC---------Ce--EEEECCHHHHHHHHHHHH--cCCCCEEEEcCCchHHHHHHHHHHHhcCCe
Confidence 34578888998887632 33 469999999999999877 679999999999999643333 22344
Q ss_pred CcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 126 TEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
++..++ ..|++.+++.+. +++.+++..+|+||||. +|.++|+++++++|.| ++|..
T Consensus 119 -~v~~vd-------~~d~e~l~~~i~---~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvD--ea~~~ 179 (388)
T PRK08861 119 -KVQFVD-------QSDAAALDAALA---KKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVD--NTFLT 179 (388)
T ss_pred -EEEEEC-------CCCHHHHHHhcC---cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE--CCccc
Confidence 444442 137788877774 34556666799999998 7899999999999999 88874
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.4e-11 Score=106.52 Aligned_cols=117 Identities=13% Similarity=0.096 Sum_probs=88.9
Q ss_pred CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH---hCCCc
Q psy6266 51 LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN---AGFTE 127 (218)
Q Consensus 51 ~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~---~g~~~ 127 (218)
....+|++.++++.-. +. ++++.+|+.|+..++.++ +.|||+|++++|.|+++...++. .|+ +
T Consensus 53 p~~~~lE~~lA~l~g~---------~~--~l~~~sG~~Ai~~~l~~l--l~~GD~Vlv~~~~y~~~~~~~~~~~~~g~-~ 118 (385)
T PRK08574 53 PTLRPLEEALAKLEGG---------VD--ALAFNSGMAAISTLFFSL--LKAGDRVVLPMEAYGTTLRLLKSLEKFGV-K 118 (385)
T ss_pred ccHHHHHHHHHHHhCC---------Cc--EEEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHhhccCc-E
Confidence 4678999999988743 22 357889999999888766 67999999999999998776644 354 4
Q ss_pred ceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 128 AREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 128 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+..+ . +|.+.+++.+.+ .++.+++.++|+||||. +|.++|+++++++|.| ++|.
T Consensus 119 v~~~---~-----~d~~~l~~~i~~--~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD--~t~a 177 (385)
T PRK08574 119 VVLA---Y-----PSTEDIIEAIKE--GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVD--NTFA 177 (385)
T ss_pred EEEE---C-----CCHHHHHHhcCc--cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEE--CCCC
Confidence 4332 1 356777777753 14555666899999997 8999999999999999 7774
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.9e-11 Score=105.40 Aligned_cols=116 Identities=16% Similarity=0.169 Sum_probs=89.0
Q ss_pred CcH---HHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH---HHHHhCC
Q psy6266 52 GLE---SFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL---VFLNAGF 125 (218)
Q Consensus 52 G~~---~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~---~~~~~g~ 125 (218)
|.| .|.++++++.-+ . . .+.+.+|+.|+..++.++ +.|||+|+++++.|+++.. .++..|+
T Consensus 45 g~p~~~~lE~~la~leg~-~-------~---~v~~ssG~~Ai~~~l~al--l~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~ 111 (397)
T PRK05939 45 GTPTTAALEAKITKMEGG-V-------G---TVCFATGMAAIAAVFLTL--LRAGDHLVSSQFLFGNTNSLFGTLRGLGV 111 (397)
T ss_pred CCHHHHHHHHHHHHHhCC-C-------e---EEEeCCHHHHHHHHHHHH--cCCCCEEEECCCccccHHHHHHHHHhcCC
Confidence 777 888888887643 2 1 246666789999888776 6899999999999987654 4556687
Q ss_pred CcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 126 TEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.++. .|++.+++.+. +++++++..+|+||||. +|.++|++++++++.| ..|.
T Consensus 112 -~v~~v~~-------~d~e~l~~~l~---~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD--~t~a 171 (397)
T PRK05939 112 -EVTMVDA-------TDVQNVAAAIR---PNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVD--NTMT 171 (397)
T ss_pred -EEEEECC-------CCHHHHHHhCC---CCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEE--CCcc
Confidence 7777643 26788887774 45566666799999996 7899999999999999 7664
|
|
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.8e-11 Score=103.85 Aligned_cols=147 Identities=14% Similarity=0.036 Sum_probs=104.2
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
..+++.+++|+.+-. . .....|. .-..++|+.+++++.. .++...+++|.++++++..++..+ +.+|
T Consensus 14 ~~~~~~~~~a~~~~~-~-~~~~~~~--~~~~~~~~~l~~l~~~-------~~~~~~i~~~~~gt~~l~~~~~~l--~~~~ 80 (368)
T PRK13479 14 LTTSRTVREAMLRDW-G-SWDDDFN--ALTASVRAKLVAIATG-------EEGYTCVPLQGSGTFSVEAAIGSL--VPRD 80 (368)
T ss_pred CCCCHHHHHHhCCCC-C-CCChHHH--HHHHHHHHHHHHHhCC-------CCCceEEEEcCCcHHHHHHHHHhc--cCCC
Confidence 456788887654322 1 1111233 2467788888876632 222223458889999999998877 5689
Q ss_pred CeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHH
Q psy6266 104 TTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHM 176 (218)
Q Consensus 104 d~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l 176 (218)
|+|+++++++.... ..++..|+ +++.++.. ....+|++.+++.+++. ++..++..++++||||. +|.++
T Consensus 81 ~~vlv~~~~~~~~~~~~~~~~~g~-~~~~i~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~~~~i~~l 156 (368)
T PRK13479 81 GKVLVPDNGAYGARIAQIAEYLGI-AHVVLDTG--EDEPPDAAEVEAALAAD-PRITHVALVHCETTTGILNPLDEIAAV 156 (368)
T ss_pred CeEEEEeCCchHHHHHHHHHHcCC-cEEEEECC--CCCCCCHHHHHHHHHhC-CCCcEEEEEcccCccccccCHHHHHHH
Confidence 99999888776653 66788898 89988873 23568999999888643 33334445689999998 79999
Q ss_pred hhcCeEEEeeC
Q psy6266 177 VDKHHVYLLRS 187 (218)
Q Consensus 177 ~~~~~i~ii~D 187 (218)
|++++++++.|
T Consensus 157 ~~~~~~~livD 167 (368)
T PRK13479 157 AKRHGKRLIVD 167 (368)
T ss_pred HHHcCCEEEEE
Confidence 99999999999
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.5e-11 Score=106.13 Aligned_cols=120 Identities=11% Similarity=0.059 Sum_probs=85.9
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCc----hhHHHHHHHhCC
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTW----ENHRLVFLNAGF 125 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y----~~y~~~~~~~g~ 125 (218)
.....+|+++++++... . . .+++.+|++|+..++.++ +.|||+|++++|.| ..|...++..|+
T Consensus 44 ~p~~~~L~~~lA~l~g~-~-------~---~v~~~sG~~ai~~~l~al--~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~ 110 (376)
T PRK06460 44 NPTVLELTKKIVELENA-E-------M---GVAFSSGMGAISTTALAL--LKPGNSVLVHRDMFGRSYRFFTDYLKNWGV 110 (376)
T ss_pred CccHHHHHHHHHHHhCC-C-------c---EEEeCCHHHHHHHHHHHH--hCCCCEEEEecCCcCcHHHHHHHHHHhhCc
Confidence 46789999999988643 1 1 135566688998887766 67999999998654 445567777888
Q ss_pred CcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 126 TEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
++..++.. +...++ .+. .+++.+++.++||||||. +|.++|+++++++|.| ++|...
T Consensus 111 -~v~~~~~~-------~~~~l~-~~~--~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivD--ea~~~~ 172 (376)
T PRK06460 111 -NVDASNPG-------SDNIIE-KAK--SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVD--ATFSTP 172 (376)
T ss_pred -EEEEECCC-------CHHHHH-Hhc--CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE--CCcCcc
Confidence 77666431 112232 232 244556666899999997 7999999999999999 888753
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=8.6e-11 Score=103.67 Aligned_cols=176 Identities=12% Similarity=0.077 Sum_probs=115.3
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
...|...||+..|.....-| +..+.|.+|.++.++. .. +....+..++++++++++.. ..+ .+++ +.
T Consensus 35 d~dg~~~iD~~~g~~~~~lG--~~~p~v~~a~~~~~~~--~~--~~~~~~~~~~~~~la~~l~~-~~~----~~~v--~~ 101 (396)
T PRK02627 35 DDDGKEYLDFLAGIAVNNLG--HCHPKLVEAIQEQAAK--LI--HTSNLYYIEPQEELAEKLVE-LSG----MDKV--FF 101 (396)
T ss_pred eCCCCEEEECCccHHhccCC--CCCHHHHHHHHHHHhh--cc--ccccccCCHHHHHHHHHHHh-hcC----CCEE--EE
Confidence 35688889998886544445 2357788887776643 11 22233457888999988865 322 2454 69
Q ss_pred eccChhHHHHHHHHHHHhcC-----CCeEEecCCCchhHHHHHHHhCCCccee-EeccCCcCccc------cHHHHHHHH
Q psy6266 83 TLSGTGALRVGAEFLHRILN-----YTTFYYSKPTWENHRLVFLNAGFTEARE-YRYWNPEKRAV------DFTGMYEDL 150 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~-----gd~V~i~~P~y~~y~~~~~~~g~~~~~~-~~~~~~~~~~~------d~~~~~~~l 150 (218)
|.||++|+.++++++..... .++|++++|+|..+.......+. .+.. .... .-..++ |++.+++.+
T Consensus 102 ~~gg~eA~~~al~~a~~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~d~~~l~~~i 179 (396)
T PRK02627 102 CNSGAEANEAAIKLARKYGHKKGIEKPEIITAENSFHGRTLATLSATG-QPKYQEGFE-PLVEGFIYVPFNDIEALKAAI 179 (396)
T ss_pred CCCcHHHHHHHHHHHHHHhcccCCCCCeEEEECCCcCcccHHHHHhcC-CccccccCC-CCCCCceEeCCCCHHHHHHhc
Confidence 99999999999886633211 17899999999887655544443 2211 1110 000122 778888777
Q ss_pred hcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 151 VNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 151 ~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
. ++..+++..+++||||. +|.++|++|++++|.| |+|.++.+.
T Consensus 180 ~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~D--E~~~g~g~~ 231 (396)
T PRK02627 180 T---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILD--EVQTGMGRT 231 (396)
T ss_pred C---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhcCCCcc
Confidence 3 33444444567999983 7999999999999999 999987543
|
|
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=101.69 Aligned_cols=152 Identities=13% Similarity=0.110 Sum_probs=104.2
Q ss_pred CCccCchHHHHHHHHHhhc-CCCCccCcCCCC------cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHH
Q psy6266 22 CKPWVLPVVRQAEKELAAD-DSLNHEYLPVLG------LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGA 94 (218)
Q Consensus 22 ~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G------~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~ 94 (218)
+..++++.|++|..+.+.. ...........| ++++|+.+++++ + .++++| +.|.|+++++.+++
T Consensus 6 ~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-g------~~~~~v--~~~~g~t~a~~~~l 76 (353)
T TIGR03235 6 ATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEAL-G------ADTEEV--IFTSGATESNNLAI 76 (353)
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHh-C------CCCCeE--EEeCCHHHHHHHHH
Confidence 3346788999998776532 111111111112 467888888765 3 234454 58899999999888
Q ss_pred HHHHHh--cCC-CeEEecCCCchhHHH---HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCC
Q psy6266 95 EFLHRI--LNY-TTFYYSKPTWENHRL---VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNP 168 (218)
Q Consensus 95 ~~l~~l--~~g-d~V~i~~P~y~~y~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NP 168 (218)
.++... .+| +.|++.+..++++.. .++..|+ +++.++.. +.+.+|++.+++.+. +++.+++.+.++||
T Consensus 77 ~~l~~~~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~-~v~~v~~~--~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~ 150 (353)
T TIGR03235 77 LGLARAGEQKGKKHIITSAIEHPAVLEPIRALERNGF-TVTYLPVD--ESGRIDVDELADAIR---PDTLLVSIMHVNNE 150 (353)
T ss_pred HHHHHhcccCCCCeeeEcccccHHHHHHHHHHHhcCC-EEEEEccC--CCCcCCHHHHHHhCC---CCCEEEEEEcccCC
Confidence 766321 256 788888777776543 3455688 88888763 245689999988874 34556666789999
Q ss_pred cHH-----HHHHHhhcCeEEEeeCC
Q psy6266 169 TAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 169 TG~-----~l~~l~~~~~i~ii~D~ 188 (218)
||. +|.++|++++++++.|+
T Consensus 151 tG~~~~~~~I~~l~~~~~~~~ivD~ 175 (353)
T TIGR03235 151 TGSIQPIREIAEVLEAHEAFFHVDA 175 (353)
T ss_pred ceeccCHHHHHHHHHHcCCEEEEEc
Confidence 998 79999999999999994
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.2e-11 Score=105.49 Aligned_cols=123 Identities=14% Similarity=0.140 Sum_probs=90.3
Q ss_pred cCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH----HH
Q psy6266 46 EYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR----LV 119 (218)
Q Consensus 46 ~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~----~~ 119 (218)
.|.- ..-..+|+++++++.-. . . .+++.+|+.|+.+++.++ +.|||+|+++.|.|+... ..
T Consensus 58 ~y~r~~~p~~~~le~~lA~l~g~-~--------~--~i~~~sG~~Al~~~l~~l--l~~Gd~Viv~~~~y~~t~~~~~~~ 124 (403)
T PRK07503 58 FYSRISNPTLALLEQRMASLEGG-E--------A--AVALASGMGAITATLWTL--LRPGDEVIVDQTLYGCTFAFLHHG 124 (403)
T ss_pred eeeCCCCchHHHHHHHHHHHhCC-C--------c--EEEEcCHHHHHHHHHHHH--cCCCCEEEEccCccchHHHHHHHH
Confidence 3553 33478999999877533 1 1 247778889999888766 689999999999887533 33
Q ss_pred HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 120 FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 120 ~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
++..|+ ++..++. .|++.+++.+.. ++.+++..+|+||||. +|.++|+++++++|.| ++|..
T Consensus 125 ~~~~G~-~v~~vd~-------~d~~~l~~~i~~---~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD--~a~a~ 191 (403)
T PRK07503 125 LGEFGV-TVRHVDL-------TDPAALKAAISD---KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVD--NTYCT 191 (403)
T ss_pred HhhCCE-EEEEeCC-------CCHHHHHHhcCc---cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEE--CCCcc
Confidence 455677 7766643 256777777743 3445555789999998 8999999999999999 88864
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.27 E-value=8e-11 Score=105.17 Aligned_cols=177 Identities=12% Similarity=-0.014 Sum_probs=119.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ..+|.|.+|.++.+++ ..+.+.++.|.++|++++++++.+ . ++| +.|
T Consensus 45 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~~~~~~~~~~~~lae~l~~~~~~-~-------~~v--~~~ 110 (423)
T TIGR00713 45 VDGNEYIDYVLSWGPLILG--HAHPRVVEAVKEALER--GTSYGAPTEAEILLAKEIISRVPS-V-------EMV--RFV 110 (423)
T ss_pred CCCCEEEEccccccccccC--CCCHHHHHHHHHHHHh--CCcCCCCCHHHHHHHHHHHHhCCc-c-------cEE--EEe
Confidence 4678888988886433445 5678888887776654 334345788999999999987643 1 344 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh---CCCcceeEeccCC-------cCc---cccHHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA---GFTEAREYRYWNP-------EKR---AVDFTGMYEDL 150 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~---g~~~~~~~~~~~~-------~~~---~~d~~~~~~~l 150 (218)
.||++|+..++++.+.....++|+..+|+|..+...+... +. ....++.... ... ..|++.+++.+
T Consensus 111 ~sGseA~e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i 189 (423)
T TIGR00713 111 NSGTEATMSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGA-ATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVF 189 (423)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcc-cccCCCCCCCCCcccccceEEeCCCCHHHHHHHH
Confidence 9999999998886544445799999999999986433321 11 1111111100 000 01678888888
Q ss_pred hcCCCC-cEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 151 VNAPDN-SVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 151 ~~~~~~-~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+...+ ..+++.+.++| ||. +|.++|++|++++|.| |+|.++.++
T Consensus 190 ~~~~~~~aavi~ep~~~~-~G~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~~g~r~g 244 (423)
T TIGR00713 190 EEYGEEIAGVIVEPVAGN-MGVVPPKPEFLAGLRALTEEYGSLLIFD--EVMTGFRVA 244 (423)
T ss_pred HHcCCcEEEEEEeCCCCC-CCCcCCCHHHHHHHHHHHHHhCCEEEEE--ccccccccC
Confidence 643223 34555578888 453 7999999999999999 999998654
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.3e-11 Score=104.86 Aligned_cols=119 Identities=14% Similarity=0.154 Sum_probs=88.9
Q ss_pred CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH----HhCCC
Q psy6266 51 LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL----NAGFT 126 (218)
Q Consensus 51 ~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~----~~g~~ 126 (218)
.-..+|++.++++.-. . . .+++.+|+.|+..++.++ +.|||+|++++|.|+.+...++ ..|+
T Consensus 65 p~~~~Le~~lA~l~G~-~--------~--~~~~~sG~~Ai~~~l~~~--l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~- 130 (398)
T PRK07504 65 PTVDMFEKRMCALEGA-E--------D--ARATASGMAAVTAAILCQ--VKAGDHVVAARALFGSCRYVVETLLPRYGI- 130 (398)
T ss_pred chHHHHHHHHHHHhCC-C--------e--eeEecCHHHHHHHHHHHH--hCCCCEEEEcCCchhHHHHHHHHHHhhcCe-
Confidence 3468899999987532 1 1 135677888887766554 6799999999999998765543 3466
Q ss_pred cceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 127 EAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+++.++ .+|++.+++++. +++.+++..+|+||||. +|.++|+++++++|.| ++|...
T Consensus 131 ~v~~vd-------~~d~e~l~~ai~---~~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD--~a~a~~ 192 (398)
T PRK07504 131 ESTLVD-------GLDLDNWEKAVR---PNTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVD--NVFATP 192 (398)
T ss_pred EEEEEC-------CCCHHHHHHhcC---cCceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEE--CCcccc
Confidence 555552 257888888774 45566666899999997 8999999999999999 888743
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.8e-11 Score=105.53 Aligned_cols=116 Identities=16% Similarity=0.171 Sum_probs=87.7
Q ss_pred CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhH----HHHHHHhCCC
Q psy6266 51 LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENH----RLVFLNAGFT 126 (218)
Q Consensus 51 ~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y----~~~~~~~g~~ 126 (218)
.-..+|+++++++... . . .+++.||++|+.+++. + +.+||+|++++|.|+.. ...++..|+
T Consensus 52 pt~~~le~~la~l~g~-~--------~--~~~~~sG~~ai~~~~~-l--l~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~- 116 (366)
T PRK08247 52 PTRGVLEQAIADLEGG-D--------Q--GFACSSGMAAIQLVMS-L--FRSGDELIVSSDLYGGTYRLFEEHWKKWNV- 116 (366)
T ss_pred chHHHHHHHHHHHhCC-C--------c--EEEEcCHHHHHHHHHH-H--hCCCCEEEEecCCcCcHHHHHHHHhhccCc-
Confidence 3567899999887643 1 1 2578888999987653 3 57999999999999974 334455788
Q ss_pred cceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 127 EAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.++. .|++.+++.+. +++.+++.++|+||||. +|.++|+++++++|.| ++|.
T Consensus 117 ~v~~vd~-------~d~~~l~~~i~---~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD--~t~~ 176 (366)
T PRK08247 117 RFVYVNT-------ASLKAIEQAIT---PNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVD--NTFY 176 (366)
T ss_pred eEEEECC-------CCHHHHHHhcc---cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE--CCCc
Confidence 7777643 26788887775 34556666799999986 7899999999999999 8884
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.4e-11 Score=104.95 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=77.6
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
+.+.+|++|+..++.++ ++|||+|++++|.|+++... ++..|. ++..++. + +.+.++++++ ++
T Consensus 83 v~~sSG~aAi~~~l~al--l~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi-~v~~vd~---~----~~e~l~~al~---~~ 149 (395)
T PRK05967 83 ILVPSGLAAVTVPFLGF--LSPGDHALIVDSVYYPTRHFCDTMLKRLGV-EVEYYDP---E----IGAGIAKLMR---PN 149 (395)
T ss_pred EEECcHHHHHHHHHHHh--cCCCCEEEEccCCcHHHHHHHHHHHHhcCe-EEEEeCC---C----CHHHHHHhcC---cC
Confidence 46677899999988776 78999999999999998753 466677 6655532 1 3356777664 44
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+++++..+|+|||+. +|+++|++++++++.| +.|...
T Consensus 150 TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD--~t~a~p 191 (395)
T PRK05967 150 TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMD--NTWATP 191 (395)
T ss_pred ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEE--CCccCc
Confidence 667777899999997 7899999999999999 887653
|
|
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.5e-11 Score=105.26 Aligned_cols=116 Identities=12% Similarity=0.154 Sum_probs=89.9
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g~~~~ 128 (218)
...|.+.++++.-+ .+ ++.|.+|+.|+.+++.++ +.+||+|++++++|.+-... +...|+ ++
T Consensus 63 v~~lE~~la~leg~-~~----------av~~~SG~aAi~~al~al--l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi-~v 128 (432)
T PRK06702 63 LAAFEQKLAELEGG-VG----------AVATASGQAAIMLAVLNI--CSSGDHLLCSSTVYGGTFNLFGVSLRKLGI-DV 128 (432)
T ss_pred HHHHHHHHHHHhCC-Cc----------EEEECCHHHHHHHHHHHh--cCCCCEEEECCCchHHHHHHHHHHHHHCCC-EE
Confidence 57777888877643 21 358999999999988876 68999999999999855444 567788 77
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
..+.. .+|.+.++++|+ +++++++..+|+|||+. +|.++|++|++++|.| ..|.
T Consensus 129 ~~vd~------~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD--~T~~ 187 (432)
T PRK06702 129 TFFNP------NLTADEIVALAN---DKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVD--NTLA 187 (432)
T ss_pred EEECC------CCCHHHHHHhCC---cCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEE--CCCC
Confidence 77632 357788888885 34555556789999986 8999999999999999 6653
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-10 Score=103.12 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=115.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ..++.|.+|..+.++. ...|....|..++...+++.+.. ..+ ...+++ +.+
T Consensus 33 ~dG~~~id~~~~~~~~~lG--~~~p~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~l~~-~~~--~~~~~v--~~~ 102 (413)
T cd00610 33 VDGNRYLDFLSGIGVLNLG--HNHPEVVEALKEQLAK---LTHFSLGFFYNEPAVELAELLLA-LTP--EGLDKV--FFV 102 (413)
T ss_pred CCCCEEEEcCccHHhhccC--CCCHHHHHHHHHHHHh---CcCccCcccCCHHHHHHHHHHHH-hCC--CCCCEE--EEc
Confidence 4678889998764223455 3577888887776643 23454433455555556655543 221 123554 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCC------------cceeEeccCC----cCccccHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT------------EAREYRYWNP----EKRAVDFTGMY 147 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~------------~~~~~~~~~~----~~~~~d~~~~~ 147 (218)
.|+++|+..++.++..+.+++.|++.+|+|..+.......+.. +++.+|.... +.+..|++.++
T Consensus 103 ~sgsea~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~ 182 (413)
T cd00610 103 NSGTEAVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALE 182 (413)
T ss_pred CcHHHHHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHH
Confidence 9999999998887654567999999999999866544433220 1334433100 11234778888
Q ss_pred HHHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 148 EDLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 148 ~~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+.+++...+..+++....+|+||. +|.++|++|++++|.| |+|.++.
T Consensus 183 ~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D--ev~~g~g 238 (413)
T cd00610 183 EALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIAD--EVQTGFG 238 (413)
T ss_pred HHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCC
Confidence 887653223444554455666675 6889999999999999 9999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-10 Score=102.87 Aligned_cols=121 Identities=12% Similarity=0.027 Sum_probs=92.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecC----CCchhHHHHHHHhC
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSK----PTWENHRLVFLNAG 124 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~----P~y~~y~~~~~~~g 124 (218)
+..-..+|.++++++..+ +. ++.+.+|+.|+..++.++ +.+||+|++++ |+|..+...++..|
T Consensus 68 ~~p~~~~le~~lA~l~g~---------~~--al~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G 134 (403)
T PRK07810 68 GNPTVSMFEERLRLIEGA---------EA--CFATASGMSAVFTALGAL--LGAGDRLVAARSLFGSCFVVCNEILPRWG 134 (403)
T ss_pred CCchHHHHHHHHHHHhCC---------Cc--EEEECChHHHHHHHHHHH--hCCCCEEEEccCCcchHHHHHHHHHHHcC
Confidence 444578899999887643 12 358889999998887766 67999999887 44555556677788
Q ss_pred CCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 125 FTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+ +++.++. .|++.+++++. +++.+++..+|+||||. +|.++|+++++++|.| ++|...
T Consensus 135 ~-~v~~vd~-------~d~~~l~~ai~---~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD--~a~a~~ 197 (403)
T PRK07810 135 V-ETVFVDG-------EDLSQWEEALS---VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLD--NVFATP 197 (403)
T ss_pred c-EEEEECC-------CCHHHHHHhcC---cCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE--CCCCcc
Confidence 8 7877742 27788888775 34556666799999996 8999999999999999 888743
|
|
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-10 Score=100.99 Aligned_cols=119 Identities=14% Similarity=0.176 Sum_probs=89.2
Q ss_pred CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhH----HHHHHHhCCC
Q psy6266 51 LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENH----RLVFLNAGFT 126 (218)
Q Consensus 51 ~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y----~~~~~~~g~~ 126 (218)
.-..+|++.++++. + . +. ++.+.+|+.|+.+++.++ +.+||+|+++++.|+.. ...++..|+
T Consensus 54 p~~~~le~~la~l~-g-~-------~~--~~~~~sG~~Ai~~al~al--~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~- 119 (380)
T TIGR01325 54 PTVAAFEERIAALE-G-A-------ER--AVATATGMSAIQAALMTL--LQAGDHVVASRSLFGSTVGFISEILPRFGI- 119 (380)
T ss_pred chHHHHHHHHHHHh-C-C-------Cc--EEEECCHHHHHHHHHHHH--hCCCCEEEEecCCcchHHHHHHHHHHHhCC-
Confidence 34788999998865 3 1 22 257899999999888776 67999999999988753 335566787
Q ss_pred cceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 127 EAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
++..++. .|++.+++.+. +++.+++..+|+||||. +|.++|+++++++|.| ++|...
T Consensus 120 ~v~~v~~-------~d~~~l~~~i~---~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD--~a~~~~ 181 (380)
T TIGR01325 120 EVSFVDP-------TDLNAWEAAVK---PNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVD--NVFATP 181 (380)
T ss_pred EEEEECC-------CCHHHHHHhcC---CCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEE--CCCccc
Confidence 7766643 15677777664 34555666789999997 7999999999999999 888643
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.6e-10 Score=101.93 Aligned_cols=122 Identities=12% Similarity=0.091 Sum_probs=89.9
Q ss_pred ccCcCCCCcH---HHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH-
Q psy6266 45 HEYLPVLGLE---SFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF- 120 (218)
Q Consensus 45 ~~Y~~~~G~~---~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~- 120 (218)
..|+- .|.| .|.++++++.-+ +. +++|.|+++|+..++.++ +.|||+|++++|.|++....+
T Consensus 42 ~~Y~r-~gnPt~~~lE~~lA~l~g~---------~~--~~~~~sG~~Ai~~al~al--l~~GD~Vl~~~~~y~~t~~~~~ 107 (377)
T TIGR01324 42 LTYGR-RGTLTHFALQDAMCELEGG---------AG--CYLYPSGLAAVTNSILAF--VKAGDHVLMVDSAYEPTRYFCD 107 (377)
T ss_pred CcccC-CCCccHHHHHHHHHHHhCC---------Cc--EEEECcHHHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHH
Confidence 45774 5764 899999977633 22 358899999999988877 689999999999998765433
Q ss_pred ---HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceee
Q psy6266 121 ---LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 121 ---~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y 192 (218)
+..|. ++..++ .. +.+.+++.+. +++++++..+|+||||. +|.++|+++++++|.| ++|
T Consensus 108 ~~~~~~gi-~v~~~d---~~----~~e~l~~~i~---~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD--~t~ 174 (377)
T TIGR01324 108 IVLKRMGV-DITYYD---PL----IGEDIATLIQ---PNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMID--NTW 174 (377)
T ss_pred HHHHhcCc-EEEEEC---CC----CHHHHHHhcC---CCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE--CCC
Confidence 44566 554442 11 1155555553 45667777899999997 7899999999999999 787
Q ss_pred c
Q psy6266 193 C 193 (218)
Q Consensus 193 ~ 193 (218)
.
T Consensus 175 a 175 (377)
T TIGR01324 175 A 175 (377)
T ss_pred c
Confidence 5
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-10 Score=100.37 Aligned_cols=175 Identities=16% Similarity=0.114 Sum_probs=111.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-|. ..|.|.+|.++.++. ..+ ... ...-+....+++++.. .. ..+++ +.+
T Consensus 28 ~dG~~~lD~~~g~~~~~lGh--~~p~v~~a~~~~~~~--~~~-~~~-~~~~~~~~~la~~l~~-~~----~~~~v--~~~ 94 (389)
T PRK01278 28 EDGERYLDFASGIAVNSLGH--AHPHLVEALKEQAEK--LWH-VSN-LYRIPEQERLAERLVE-NS----FADKV--FFT 94 (389)
T ss_pred CCCCEEEECCccHhhccCCC--CCHHHHHHHHHHHHh--cCc-ccc-ccCChHHHHHHHHHHh-hC----CCCEE--EEc
Confidence 46777888877654344563 567888777665542 111 111 1122333445555543 21 12444 588
Q ss_pred ccChhHHHHHHHHHHH--hcCCC----eEEecCCCchhHHHHHHHhCCCcceeEeccCC--cCcc----ccHHHHHHHHh
Q psy6266 84 LSGTGALRVGAEFLHR--ILNYT----TFYYSKPTWENHRLVFLNAGFTEAREYRYWNP--EKRA----VDFTGMYEDLV 151 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~--l~~gd----~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~--~~~~----~d~~~~~~~l~ 151 (218)
.+|++|+..++++... .++|| +|++.+|+|+.+.......+. .+.....+.+ +.+. .|++.+++.+.
T Consensus 95 ~sGseA~~~al~~ar~~~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 173 (389)
T PRK01278 95 NSGAEAVECAIKTARRYHYGKGHPERYRIITFEGAFHGRTLATIAAGG-QEKYLEGFGPLVPGFDQVPFGDIEALKAAIT 173 (389)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCcHHHHhccC-ChhhcccCCCCCCCceEeCCCCHHHHHHhhC
Confidence 9999999998886543 34677 999999999998876666655 4433221111 1111 37888888774
Q ss_pred cCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
. +..+++....+||+|. +|.++|++|++++|.| |+|.++.+
T Consensus 174 ~---~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~D--Ev~~g~g~ 223 (389)
T PRK01278 174 P---NTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFD--EVQCGMGR 223 (389)
T ss_pred C---CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCc
Confidence 2 3445555567888882 7999999999999999 99998754
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.3e-10 Score=104.86 Aligned_cols=125 Identities=15% Similarity=0.173 Sum_probs=90.6
Q ss_pred CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----
Q psy6266 44 NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV---- 119 (218)
Q Consensus 44 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~---- 119 (218)
.+.|+.. |.| .++++.+++.. ..+ .+. .+.+.+++.|+.+++. + +.+||+|++++|.|+.+...
T Consensus 124 ~~~Y~r~-gnp-t~~aLE~~lA~-leg----~e~--ai~~~SG~aAi~~il~-l--l~~GD~VI~~~~~y~~t~~ll~~~ 191 (464)
T PLN02509 124 PYDYTRS-GNP-TRDALESLLAK-LDK----ADR--AFCFTSGMAALSAVTH-L--IKNGEEIVAGDDVYGGSDRLLSQV 191 (464)
T ss_pred CCccCCC-CCH-HHHHHHHHHHH-HhC----CCE--EEEeCcHHHHHHHHHH-H--hCCCCEEEEcCCchhhHHHHHHHH
Confidence 4678877 876 57777777644 211 122 3466777888866553 3 57999999999999998744
Q ss_pred HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 120 FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 120 ~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+...|+ +++.++. .|++.+++.+. +++++++..+|+||||. +|.++|++|++++|.| ++|.
T Consensus 192 l~~~G~-~v~~vd~-------~d~e~l~~ai~---~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD--~A~a 257 (464)
T PLN02509 192 VPRSGV-VVKRVNT-------TNLDEVAAAIG---PQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVD--NSIM 257 (464)
T ss_pred HHHCCe-EEEEeCC-------CCHHHHHHhCC---cCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEE--CCcc
Confidence 345677 6766632 25677777774 45566666899999997 7889999999999999 7764
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.2e-10 Score=97.16 Aligned_cols=152 Identities=14% Similarity=0.120 Sum_probs=104.8
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCc----HHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGL----ESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~----~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
++.+.+.+++.+..+.......+. .|. .++|+.+++++ + .+++.+ +.|.|++++...++.++...
T Consensus 31 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~-g------~~~~~~--~~~~ggt~a~~~a~~~~~~~ 99 (371)
T PRK13520 31 EPHPIARKAHEMFLETNLGDPGLF--PGTAKLEEEAVEMLGELL-H------LPDAYG--YITSGGTEANIQAVRAARNL 99 (371)
T ss_pred CchHHHHHHHHHHHhcCCCCcccC--ccHHHHHHHHHHHHHHHh-C------CCCCCe--EEecCcHHHHHHHHHHHHhh
Confidence 456666777766554311122211 233 35666666554 3 222333 57899999988887665332
Q ss_pred --cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HH
Q psy6266 101 --LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 101 --~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l 173 (218)
.++|+|+++++.++++...++..|+ +++.+|.. +.+.+|++.+++.+.+ ++..++...++||||. +|
T Consensus 100 ~~~~~~~vl~~~~~h~s~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~vi~~~~~~~tG~~~~l~~I 173 (371)
T PRK13520 100 AKAEKPNIVVPESAHFSFDKAADMLGV-ELRRAPLD--DDYRVDVKAVEDLIDD---NTIGIVGIAGTTELGQVDPIPEL 173 (371)
T ss_pred ccCCCceEEecCcchHHHHHHHHHcCc-eEEEecCC--CCCcCCHHHHHHHHhh---CCEEEEEEcCCcCCcccCCHHHH
Confidence 2579999999999999988888898 88888762 2356799999998863 2333333457899998 89
Q ss_pred HHHhhcCeEEEeeCCceeeccC
Q psy6266 174 AHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.++|++++++++.| ++|.++
T Consensus 174 ~~l~~~~g~~livD--~a~~~~ 193 (371)
T PRK13520 174 SKIALENGIFLHVD--AAFGGF 193 (371)
T ss_pred HHHHHHcCCCEEEE--ecchhH
Confidence 99999999999999 888754
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.8e-10 Score=99.75 Aligned_cols=163 Identities=12% Similarity=-0.008 Sum_probs=104.6
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC----C-ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL----N-HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~----~-~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|.+.++++--.| .| +..++.|++|..+.++..+. . ..|....-..+|++++++++-. ++. +
T Consensus 45 ~~~~~~~~sn~y---l~-l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~--------~~~--i 110 (410)
T PRK13392 45 PRRVTIWCSNDY---LG-MGQHPDVIGAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGK--------ESA--L 110 (410)
T ss_pred CceEEEEECCCc---cC-CCCCHHHHHHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCC--------CCE--E
Confidence 345667766544 22 45678888887776643110 0 1122222467888888887622 122 2
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCCcEE
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDNSVI 159 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~i 159 (218)
+.+.| +.|...++.++..+.+||.|+++.+.+..+...++..|+ ++..++. .|++.+.+.+++. ++++.+
T Consensus 111 ~~~sG-~~a~~~~i~~l~~~~~g~~vi~~~~~h~s~~~~~~~~g~-~~~~~~~-------~d~~~l~~~l~~~~~~~t~~ 181 (410)
T PRK13392 111 LFTSG-YVSNDAALSTLGKLLPGCVILSDALNHASMIEGIRRSGA-EKQVFRH-------NDLADLEEQLASVDPDRPKL 181 (410)
T ss_pred EECcH-HHHHHHHHHHHhcCCCCCEEEEehhhhHHHHHHHHHcCC-eEEEEeC-------CCHHHHHHHHHhccCCCCEE
Confidence 35555 556555555443234899888887788877777777887 6655421 1445555555543 245666
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++.++|+||||. +|.++|+++++++|.| ++|.
T Consensus 182 v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livD--ea~~ 218 (410)
T PRK13392 182 IAFESVYSMDGDIAPIEAICDLADRYNALTYVD--EVHA 218 (410)
T ss_pred EEEeCCCCCCcccccHHHHHHHHHHcCCEEEEE--CCcc
Confidence 777899999996 7999999999999999 9988
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.9e-10 Score=99.15 Aligned_cols=123 Identities=11% Similarity=0.086 Sum_probs=87.3
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcc
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEA 128 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~ 128 (218)
+..-..+|++.++++.-. . + .+.+.+|+.|+..++.++ +.|||+|++++|.|+.....+..... ..
T Consensus 59 ~~pt~~~Le~~lA~l~G~-~-------~---al~~~sG~~Ai~~~l~al--~~~Gd~Vv~~~~~y~~~~~~~~~~~~-~~ 124 (386)
T PRK06767 59 GNPTVKLFEERMAVLEGG-E-------E---ALAFGSGMAAISATLIGF--LKAGDHIICSNGLYGCTYGFLEVLEE-KF 124 (386)
T ss_pred CCcchHHHHHHHHHHhCC-C-------c---EEEECCHHHHHHHHHHHH--hCCCCEEEEcCCcHHHHHHHHHHHHh-hc
Confidence 445578999999987633 1 2 246677788888877766 67999999999999987766554422 11
Q ss_pred -eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 129 -REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 129 -~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+.+.... ..|++.+++++. +++.+++..+|+||||. +|.++|++++++++.| ++|..
T Consensus 125 gi~~~~~~----~~d~~~l~~~i~---~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD--~a~a~ 187 (386)
T PRK06767 125 MITHSFCD----METEADIENKIR---PNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVD--NTFCS 187 (386)
T ss_pred CeEEEEeC----CCCHHHHHHhhC---cCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEE--CCCcc
Confidence 1111111 236777877774 34556666799999997 8999999999999999 88763
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=103.51 Aligned_cols=115 Identities=12% Similarity=0.126 Sum_probs=86.8
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH----HHHHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR----LVFLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~----~~~~~~g~~~~ 128 (218)
...|.++++++..+ . . .++|.+|++|+..++..+ +.+||+|++++|.|+.-. ..++..|+ ++
T Consensus 66 ~~~Le~~lA~leg~-~--------~--al~~~sG~~Ai~~al~~l--l~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv-~v 131 (431)
T PRK08248 66 TDVFEKRIAALEGG-I--------G--ALAVSSGQAAITYSILNI--ASAGDEIVSSSSLYGGTYNLFAHTLPKLGI-TV 131 (431)
T ss_pred HHHHHHHHHHHhCC-C--------c--EEEECCHHHHHHHHHHHH--hCCCCEEEEccCchhhHHHHHHHHHHhCCE-EE
Confidence 56777777776533 1 1 358999999999888766 679999999999886532 34566788 78
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.++. .|++.+++++.. ++.+++..+|+||||. +|.++|+++++++|.| .+|.
T Consensus 132 ~~vd~-------~d~e~l~~ai~~---~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD--~t~a 189 (431)
T PRK08248 132 KFVDP-------SDPENFEAAITD---KTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVD--NTFA 189 (431)
T ss_pred EEECC-------CCHHHHHHhcCC---CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEe--CCCC
Confidence 77754 267788877753 3444555689999998 7999999999999999 7765
|
|
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.4e-10 Score=102.76 Aligned_cols=116 Identities=13% Similarity=0.118 Sum_probs=86.9
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g~~~~ 128 (218)
..+|+++++++... . . .+++.+|+.|+.+++.++ +.|||+|++++|.|+..... +...|+ ++
T Consensus 61 ~~~le~~lA~l~g~-~--------~--av~~~sG~~Ai~~~l~al--~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~-~~ 126 (391)
T TIGR01328 61 VSNLEGRIAFLEGT-E--------A--AVATSSGMGAIAATLLTI--LKAGDHLISDECLYGCTFALLEHALTKFGI-QV 126 (391)
T ss_pred HHHHHHHHHHHhCC-C--------c--EEEECCHHHHHHHHHHHH--hCCCCEEEEecCcchHHHHHHHHHHhcCCe-EE
Confidence 56699999988643 1 1 257888888998887766 67999999999988754433 344677 66
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+.++. .|.+.+++.+. +++.+++..+|+||||. +|.++|+++++++|.| ++|..
T Consensus 127 ~~vd~-------~d~e~l~~~i~---~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD--~a~a~ 185 (391)
T TIGR01328 127 DFINM-------AIPEEVKAHIK---DNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVD--NTFAT 185 (391)
T ss_pred EEECC-------CCHHHHHHhhc---cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE--CCCch
Confidence 66643 16777777774 34556666799999997 7999999999999999 77763
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-10 Score=100.55 Aligned_cols=116 Identities=13% Similarity=0.121 Sum_probs=83.9
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchh-HH---HHHHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWEN-HR---LVFLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~-y~---~~~~~~g~~~~ 128 (218)
..+|+++++++.-. . +. +.+..|+.|+.+++. + +.+||+|++++|.|+. |. ..++..|+ ++
T Consensus 56 ~~~le~~lA~l~g~-~-------~~---v~~~sG~~ai~~~l~-~--l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~-~v 120 (390)
T PRK08064 56 REALEDIIAELEGG-T-------KG---FAFASGMAAISTAFL-L--LSKGDHVLISEDVYGGTYRMITEVLSRFGI-EH 120 (390)
T ss_pred HHHHHHHHHHHhCC-C-------Ce---EEECCHHHHHHHHHH-H--hCCCCEEEEccCccchHHHHHHHHHHHcCC-EE
Confidence 57888888887632 1 22 245555778776664 3 5789999999999984 32 34455788 77
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.++. .|++.+++.+. +++.+++..+|+||||. +|.++|++++++++.| ++|...
T Consensus 121 ~~v~~-------~d~~~l~~~l~---~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD--~a~~~~ 180 (390)
T PRK08064 121 TFVDM-------TNLEEVAQNIK---PNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVD--NTFLTP 180 (390)
T ss_pred EEECC-------CCHHHHHHhcC---CCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEE--CCCCcc
Confidence 77754 15677777774 34566666899999997 7899999999999999 777653
|
|
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.1e-10 Score=97.09 Aligned_cols=154 Identities=10% Similarity=0.093 Sum_probs=102.7
Q ss_pred CCCCccCchHHHHHHHHHhhc-CCCCccCcCCCC------cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHH
Q psy6266 20 EECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLG------LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRV 92 (218)
Q Consensus 20 ~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G------~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~ 92 (218)
..+..++++.|.+|..+.... ...........+ +.++|+.+++++ + .++++| +.|.|+++++.+
T Consensus 5 ~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-g------~~~~~v--~~t~~~t~a~~~ 75 (364)
T PLN02651 5 MQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALI-G------ADPKEI--IFTSGATESNNL 75 (364)
T ss_pred CcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHh-C------CCCCeE--EEeCCHHHHHHH
Confidence 344446788999987765532 000000000111 456677777655 3 233444 588999999888
Q ss_pred HHHHHHH--hcCCCeEEecCCCchhHHHH---HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 93 GAEFLHR--ILNYTTFYYSKPTWENHRLV---FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 93 ~~~~l~~--l~~gd~V~i~~P~y~~y~~~---~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
++..+.. +.+||+|++++-.++++... ++..|+ +++.++.. +.+.+|.+.+++.++ +++.++....++|
T Consensus 76 ~l~~~~~~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~-~v~~v~~~--~~~~~d~~~l~~~i~---~~t~lv~v~~~~n 149 (364)
T PLN02651 76 AIKGVMHFYKDKKKHVITTQTEHKCVLDSCRHLQQEGF-EVTYLPVK--SDGLVDLDELAAAIR---PDTALVSVMAVNN 149 (364)
T ss_pred HHHHHHHhccCCCCEEEEcccccHHHHHHHHHHHhcCC-EEEEEccC--CCCcCCHHHHHHhcC---CCcEEEEEECCCC
Confidence 7765422 35799999999777765433 344577 77777762 235678999988885 3455666678999
Q ss_pred CcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 168 PTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 168 PTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
|||. +|.++|++++++++.|+
T Consensus 150 ~tG~~~~l~~I~~~~~~~g~~~~vD~ 175 (364)
T PLN02651 150 EIGVIQPVEEIGELCREKKVLFHTDA 175 (364)
T ss_pred CceecccHHHHHHHHHHcCCEEEEEc
Confidence 9998 79999999999999994
|
|
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.7e-10 Score=99.72 Aligned_cols=116 Identities=13% Similarity=0.129 Sum_probs=83.0
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCch-hHHH---HHHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWE-NHRL---VFLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~-~y~~---~~~~~g~~~~ 128 (218)
...|++.++++.-. . . .+++..|+.++.+++. + +.|||+|++++|.|+ .|.. .++..|+ ++
T Consensus 52 ~~~Le~~lA~l~g~-~--------~--~~~~~sG~aai~~~~~-~--l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~-~v 116 (377)
T PRK07671 52 RAALEELIAVLEGG-H--------A--GFAFGSGMAAITAVMM-L--FSSGDHVILTDDVYGGTYRVMTKVLNRFGI-EH 116 (377)
T ss_pred HHHHHHHHHHHhCC-C--------c--eEEeCCHHHHHHHHHH-H--hCCCCEEEECCCccchHHHHHHHHHhcCCe-EE
Confidence 67888888887532 1 1 1345555677765543 3 579999999999999 5543 2334577 67
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.++. .|++.+++++. +++.+++..+|+||||. +|.++|++++++++.| ++|...
T Consensus 117 ~~v~~-------~d~~~l~~ai~---~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD--~a~~~~ 176 (377)
T PRK07671 117 TFVDT-------SNLEEVEEAIR---PNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVD--NTFMTP 176 (377)
T ss_pred EEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEE--CCCCcc
Confidence 66632 26788887774 34556666799999997 7999999999999999 888653
|
|
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.16 E-value=4.4e-10 Score=97.36 Aligned_cols=125 Identities=14% Similarity=0.063 Sum_probs=95.8
Q ss_pred CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCC
Q psy6266 47 YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT 126 (218)
Q Consensus 47 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~ 126 (218)
|.......+|++++++++.. ++ ++.|.++++|+..++.++. +.+||+|+++.|+|..+...+...|+
T Consensus 14 ~~~~~~~~~~~~~la~~~~~---------~~--~~~~~sgt~al~~~l~~l~-~~~gd~vl~~~~~~~~~~~~~~~~g~- 80 (352)
T cd00616 14 LTLGPKVREFEKAFAEYLGV---------KY--AVAVSSGTAALHLALRALG-IGPGDEVIVPSFTFVATANAILLLGA- 80 (352)
T ss_pred ccCCHHHHHHHHHHHHHhCC---------Ce--EEEECCHHHHHHHHHHHcC-CCCCCEEEeCCcchHHHHHHHHHcCC-
Confidence 34445689999999988632 22 2467788999998887652 46899999999999999999999999
Q ss_pred cceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 127 EAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.++.. .+.+.+|++.+++.+. +++.+++. .||||. +|.++|+++++++|.| .+++
T Consensus 81 ~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~~---~~~~G~~~~~~~i~~l~~~~~i~li~D--~a~~ 143 (352)
T cd00616 81 TPVFVDID-PDTYNIDPELIEAAIT---PRTKAIIP---VHLYGNPADMDAIMAIAKRHGLPVIED--AAQA 143 (352)
T ss_pred eEEEEecC-CCcCCcCHHHHHHhcC---cCCeEEEE---ECCCCCcCCHHHHHHHHHHcCCeEEEE--CCCC
Confidence 89999873 3356779999988774 33444442 357885 7999999999999999 6554
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.6e-10 Score=97.71 Aligned_cols=161 Identities=12% Similarity=0.004 Sum_probs=111.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC-CCC---ccC-cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD-SLN---HEY-LPVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~---~~Y-~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.|..+||++--.|-+- ...|.|++|..+.+++. ... ..| ....-..+|.+.+++++.. +.+
T Consensus 52 ~g~~~~~~~~~~YL~l----~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---------~~~- 117 (407)
T PRK07179 52 PGPDAIILQSNDYLNL----SGHPDIIKAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGF---------ESC- 117 (407)
T ss_pred CCCcEEEeecCCccCC----CCCHHHHHHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCC---------CcE-
Confidence 4567788876666433 34566777766655331 111 111 1112357777877776522 233
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEE
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
+.|.||++|..++++++ ..+||.|++..+.+++....++..|+ +++.++ ..|++.+++.+++. ++.+
T Consensus 118 -~~~~sG~~An~~~l~~l--~~~g~~v~~~~~~h~s~~~~~~~~g~-~~~~~~-------~~d~~~l~~~l~~~--~~~l 184 (407)
T PRK07179 118 -LLCQSGWAANVGLLQTI--ADPNTPVYIDFFAHMSLWEGVRAAGA-QAHPFR-------HNDVDHLRRQIERH--GPGI 184 (407)
T ss_pred -EEECCHHHHHHHHHHHh--CCCCCEEEEECCcCHHHHHHHHHCCC-eEEEec-------CCCHHHHHHHHHhc--CCeE
Confidence 47899999999888877 56899999999998888777777787 665542 24788888888642 2455
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
++..+++||||. +|.++|+++++++|.| ++|..
T Consensus 185 V~v~~v~n~tG~i~pl~~I~~l~~~~~~~livD--ea~~~ 222 (407)
T PRK07179 185 IVVDSVYSTTGTIAPLADIVDIAEEFGCVLVVD--ESHSL 222 (407)
T ss_pred EEECCCCCCCCccccHHHHHHHHHHcCCEEEEE--Ccccc
Confidence 556789999997 8999999999999999 88863
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=101.50 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=88.8
Q ss_pred CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH----HHHHHhCCC
Q psy6266 51 LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR----LVFLNAGFT 126 (218)
Q Consensus 51 ~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~----~~~~~~g~~ 126 (218)
.-..+|++.++++.-. +. .+.|.+|+.|+..++.++ +.+||+|++++|.|+... ..++..|+
T Consensus 57 p~~~~le~~lA~l~g~---------~~--~v~~~sG~~Ai~~al~~l--~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~- 122 (418)
T TIGR01326 57 PTTDVLEQRIAALEGG---------VA--ALAVASGQAAITYAILNL--AQAGDNIVSSSYLYGGTYNLFKHTLKRLGI- 122 (418)
T ss_pred hhHHHHHHHHHHHhCC---------Ce--EEEEccHHHHHHHHHHHH--hCCCCEEEEECCCcHHHHHHHHHHHHHcCc-
Confidence 3467888988887632 12 358899999999888766 679999999999987533 34566788
Q ss_pred cceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 127 EAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.++. .|++.+++.+. +++.+++..+|+||||. +|.++|+++++++|.| ++|.
T Consensus 123 ~v~~v~~-------~d~~~l~~~l~---~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD--~t~~ 182 (418)
T TIGR01326 123 EVRFVDP-------DDPEEFEKAID---ENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVD--NTFA 182 (418)
T ss_pred EEEEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE--CCCc
Confidence 7777743 16788887774 33445555789999997 7999999999999999 7775
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=96.14 Aligned_cols=141 Identities=16% Similarity=0.057 Sum_probs=107.5
Q ss_pred chHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeE
Q psy6266 27 LPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTF 106 (218)
Q Consensus 27 ~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V 106 (218)
-+...++..+.++. +. ++.-.=..+|-+++++++-- ++ ++.+..+|.|+++++.++. +.|||+|
T Consensus 14 ~~~e~~~v~~vl~s--g~--i~~G~~v~~FE~~~ae~~G~-k~----------ava~~sgT~AL~laL~al~-ig~GDeV 77 (374)
T COG0399 14 GEEELAAVQEVLKS--GW--LTGGPFVRRFEQAFAEYLGV-KY----------AVAVSSGTAALHLALLALA-IGPGDEV 77 (374)
T ss_pred chHHHHHHHHHHHc--CC--eecChHHHHHHHHHHHHhCC-Ce----------EEEecChHHHHHHHHHhcC-CCCCCEE
Confidence 34555555565543 22 22322247788888877643 22 3588899999999998775 6899999
Q ss_pred EecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-HHHHHhhcCeEEEe
Q psy6266 107 YYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-QVAHMVDKHHVYLL 185 (218)
Q Consensus 107 ~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-~l~~l~~~~~i~ii 185 (218)
++|+=+|..-.+.+...|+ +|+.+.. +.+++.+|.+.++++|+.. .| .|+......||.-. +|.++|++|+|+||
T Consensus 78 I~ps~TfvATan~i~~~Ga-~PVFvDi-d~~T~nid~~~ie~aIt~~-tK-AIipVhl~G~~~dm~~i~~la~~~~l~vI 153 (374)
T COG0399 78 IVPSFTFVATANAVLLVGA-KPVFVDI-DPDTLNIDPDLIEAAITPR-TK-AIIPVHLAGQPCDMDAIMALAKRHGLPVI 153 (374)
T ss_pred EecCCchHHHHHHHHHcCC-eEEEEec-CCcccCCCHHHHHHHcccC-Ce-EEEEehhccCCCCHHHHHHHHHHcCCeEE
Confidence 9999999999999999999 9999998 4667889999999999743 22 33444567888766 89999999999999
Q ss_pred eC
Q psy6266 186 RS 187 (218)
Q Consensus 186 ~D 187 (218)
+|
T Consensus 154 ED 155 (374)
T COG0399 154 ED 155 (374)
T ss_pred EE
Confidence 99
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.5e-10 Score=99.21 Aligned_cols=140 Identities=18% Similarity=0.110 Sum_probs=99.4
Q ss_pred HHHHHHHHHhhcCCCCccCcC-CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEE
Q psy6266 29 VVRQAEKELAADDSLNHEYLP-VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFY 107 (218)
Q Consensus 29 ~v~~a~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~ 107 (218)
...++..++++. + .++. ..=..+|-+++++++-. + . ++.+..|+.|+.+++.++. +.+||+|+
T Consensus 6 e~~~~v~~~l~s-~---~~~~~g~~~~~fE~~~a~~~g~-~--------~--~~~~~sgt~Al~~al~~l~-~~~gdeVi 69 (363)
T PF01041_consen 6 EEIDAVLEVLRS-G---WLSTYGPYVEEFEKEFAEYFGV-K--------Y--AVAVSSGTSALHLALRALG-LGPGDEVI 69 (363)
T ss_dssp HHHHHHHHHHHH-T---CCSSSSHHHHHHHHHHHHHHTS-S--------E--EEEESSHHHHHHHHHHHTT-GGTTSEEE
T ss_pred HHHHHHHHHHHh-C---CccCCCHHHHHHHHHHHHHhCC-C--------e--EEEeCChhHHHHHHHHhcC-CCcCceEe
Confidence 344555555544 2 2332 23357888888887743 2 2 3578888999999998864 67999999
Q ss_pred ecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-HHHHHhhcCeEEEee
Q psy6266 108 YSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-QVAHMVDKHHVYLLR 186 (218)
Q Consensus 108 i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-~l~~l~~~~~i~ii~ 186 (218)
+|.=+|+.....+..+|+ +|+.++.. ++++.+|++.+++.+.+. .+.+++.....+|.-. +|.++|++|+|+||+
T Consensus 70 ~p~~t~~~~~~ai~~~G~-~pv~~Di~-~~~~~id~~~~~~~i~~~--t~ai~~~h~~G~~~d~~~i~~~~~~~~i~lIe 145 (363)
T PF01041_consen 70 VPAYTFPATASAILWAGA-EPVFVDID-PETLNIDPEALEKAITPK--TKAILVVHLFGNPADMDAIRAIARKHGIPLIE 145 (363)
T ss_dssp EESSS-THHHHHHHHTT--EEEEE-BE-TTTSSB-HHHHHHHHHTT--EEEEEEE-GGGB---HHHHHHHHHHTT-EEEE
T ss_pred cCCCcchHHHHHHHHhcc-EEEEEecc-CCcCCcCHHHHHHHhccC--ccEEEEecCCCCcccHHHHHHHHHHcCCcEEE
Confidence 999999999999999999 99999984 567899999999999743 2345555667777665 799999999999999
Q ss_pred CC
Q psy6266 187 SG 188 (218)
Q Consensus 187 D~ 188 (218)
|-
T Consensus 146 D~ 147 (363)
T PF01041_consen 146 DA 147 (363)
T ss_dssp E-
T ss_pred cc
Confidence 93
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-10 Score=101.45 Aligned_cols=120 Identities=10% Similarity=0.077 Sum_probs=87.0
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcc
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEA 128 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~ 128 (218)
+.....+|+++++++..+ +. ++.+.||++|+.+++.+ +.|||+|+++.+.|+.-...+...-- +
T Consensus 52 ~~p~~~~le~~lA~leg~---------~~--~v~~~sG~aAi~~~l~~---l~~GD~VI~~~~~yg~~~~~~~~~~~-~- 115 (364)
T PRK07269 52 KNPTRAKLEETLAAIESA---------DY--ALATSSGMSAIVLAFSV---FPVGSKVVAVRDLYGGSFRWFNQQEK-E- 115 (364)
T ss_pred CCccHHHHHHHHHHHhCC---------Ce--EEEeCCHHHHHHHHHHH---hCCCCEEEEecCCcCchHHHHHHHHh-c-
Confidence 345678999999988743 22 46899999999988743 57999999999999865544433211 1
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
..+.. .+..|.+.++++++ +++.+++..+|+||||. +|+++|++++++++.| ++|.
T Consensus 116 ~~~~~----~~~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD--~t~~ 176 (364)
T PRK07269 116 GRFHF----TYANTEEELIAAIE---EDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVD--NTFY 176 (364)
T ss_pred CcEEE----EecCCHHHHHHhcC---cCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEE--CCCc
Confidence 01110 12347788888775 34566777899999996 8999999999999999 7764
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.13 E-value=4.6e-10 Score=100.64 Aligned_cols=122 Identities=13% Similarity=0.132 Sum_probs=90.0
Q ss_pred cCcCCC--CcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH----HH
Q psy6266 46 EYLPVL--GLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR----LV 119 (218)
Q Consensus 46 ~Y~~~~--G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~----~~ 119 (218)
.|+-.. -...|.+.++++.-+ . . .+.+.+|+.|+.+++.++ +.|||+|++++|.|+.-. ..
T Consensus 56 ~y~r~~~p~~~~le~~lA~l~g~-~--------~--al~~~SG~~Ai~~al~al--l~pGd~VIv~~~~y~~t~~~~~~~ 122 (427)
T PRK05994 56 IYTRITNPTNAVLEERVAALEGG-T--------A--ALAVASGHAAQFLVFHTL--LQPGDEFIAARKLYGGSINQFGHA 122 (427)
T ss_pred ceECCCCccHHHHHHHHHHHhCC-C--------c--EEEEcCHHHHHHHHHHHH--hCCCCEEEEecCcchhHHHHHHHH
Confidence 355542 246778888877633 1 1 357888899999888876 679999999999998643 33
Q ss_pred HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 120 FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 120 ~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++..|+ +++.++. .|.+.+++.+. +++.+++..+|+||||. +|.++|+++++++|.| +++.
T Consensus 123 ~~~~G~-~v~~vd~-------~d~~~l~~ai~---~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD--~a~a 188 (427)
T PRK05994 123 FKSFGW-QVRWADA-------DDPASFERAIT---PRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVD--NTLA 188 (427)
T ss_pred HHhcCc-EEEEECC-------CCHHHHHHhcC---cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE--CCcc
Confidence 566787 7776642 26777777774 34555666799999997 7999999999999999 6765
|
|
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.8e-10 Score=100.04 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=85.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH----HHhC
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF----LNAG 124 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~----~~~g 124 (218)
+.....+|+++++++. + . + . +++.+|+.|+.+++.++ +.|||+|++++|.|+.+...+ +..|
T Consensus 49 ~~p~~~~Le~~lA~l~-~-~-------~-~--v~~~sG~~Ai~~~l~al--l~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G 114 (366)
T PRK07582 49 SNPTWRALEAALGELE-G-A-------E-A--LVFPSGMAAITAVLRAL--LRPGDTVVVPADGYYQVRALAREYLAPLG 114 (366)
T ss_pred CCccHHHHHHHHHHHc-C-C-------C-E--EEECCHHHHHHHHHHHh--cCCCCEEEEeCCCcHhHHHHHHHHHhcCe
Confidence 6778999999999876 5 2 2 2 36677778998887766 689999999999999987654 3457
Q ss_pred CCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 125 FTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+ +++.++.. . +.. . +. +++.+++..+|+||||. +|.++|++++++++.| ++|.
T Consensus 115 ~-~v~~v~~~-~-----~~~---~-~~---~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD--~t~~ 172 (366)
T PRK07582 115 V-TVREAPTA-G-----MAE---A-AL---AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVD--NTTA 172 (366)
T ss_pred E-EEEEECCC-C-----hHH---H-hc---cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEE--CCCC
Confidence 7 77777542 1 111 1 11 23445555799999995 8999999999999999 7774
|
|
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.4e-10 Score=98.04 Aligned_cols=176 Identities=12% Similarity=0.077 Sum_probs=108.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| +..+.|.+|.++.+++.+ ....|....+ .+|.+.++++. + . ...+++ +.
T Consensus 40 ~dg~~~lD~~s~~~~~~lG--~~~p~v~~ai~~~~~~~~~~~~~~~~~~~-~~la~~l~~~~-~-~----~~~~~v--~~ 108 (398)
T PRK03244 40 VDGKEYLDLLGGIAVNALG--HAHPAVVEAVTRQLATLGHVSNLFATEPQ-IALAERLVELL-G-A----PEGGRV--FF 108 (398)
T ss_pred CCCCEEEECCcCHhhccCC--CCCHHHHHHHHHHHHhccCccCccCCHHH-HHHHHHHHHhC-C-C----CCCCEE--EE
Confidence 4688888998876444455 346788888777665411 1234654443 35555555443 2 1 122444 69
Q ss_pred eccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHHHHHHhCCCcceeEec--cCCcCc---cccHHHHHHHHhcCCCC
Q psy6266 83 TLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRY--WNPEKR---AVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~--~~~~~~---~~d~~~~~~~l~~~~~~ 156 (218)
|.||++|+..++++... +| +.|+..+++|..+.......+.......++ ...+.. ..|++.+++.+. ++
T Consensus 109 ~~sgsea~~~al~~~~~--~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~ 183 (398)
T PRK03244 109 CNSGAEANEAAFKLARL--TGRTKIVAAEGGFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD---DD 183 (398)
T ss_pred eCchHHHHHHHHHHHHH--HCCCeEEEECCCcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc---CC
Confidence 99999999999886643 55 577788899988754333332201111100 000000 126777777663 23
Q ss_pred cEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 157 SVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 157 ~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
..+++..+++||||. +|.++|++|++++|.| |+|.++-.
T Consensus 184 ~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~~g~gr 231 (398)
T PRK03244 184 TAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLD--EVQTGIGR 231 (398)
T ss_pred eEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCCcc
Confidence 344444678999997 6889999999999999 99988643
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.1e-09 Score=97.17 Aligned_cols=150 Identities=10% Similarity=0.038 Sum_probs=102.5
Q ss_pred ccCchHHHHHHHHHhhc-C----CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHH
Q psy6266 24 PWVLPVVRQAEKELAAD-D----SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLH 98 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~-~----~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~ 98 (218)
....|.++++..+++++ . .....|+...+..+|++++++++.+ . +. .+.+.|.+... .+++++
T Consensus 11 l~~~~~~~~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~-e-------~a--l~~~sG~~a~~-~~i~~l- 78 (392)
T PLN03227 11 TSSSPTLRQTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGT-E-------SA--ILYSDGASTTS-STVAAF- 78 (392)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCC-C-------cE--EEecCcHHHHH-HHHHHh-
Confidence 34566777776666543 0 0122377777899999999998743 1 22 23445544444 555555
Q ss_pred HhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC--------CCCcEEEEcccCCCCcH
Q psy6266 99 RILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA--------PDNSVIILHACAHNPTA 170 (218)
Q Consensus 99 ~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~--------~~~~~iil~~~p~NPTG 170 (218)
+.|||.|+++++.|++....+.+.++ +++.++.- + ..+++.+.+.+... ++++++++..+++||+|
T Consensus 79 -~~~GD~Vl~~~~~h~s~~~~~~l~~~-~~~~~~~~--d--~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G 152 (392)
T PLN03227 79 -AKRGDLLVVDRGVNEALLVGVSLSRA-NVRWFRHN--D--MKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTG 152 (392)
T ss_pred -CCCCCEEEEeccccHHHHHHHHHcCC-eEEEeCCC--C--HHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCC
Confidence 68999999999999999887777777 66666431 1 12455555555321 13456676778999999
Q ss_pred H-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 171 Q-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 171 ~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
. ++.++|++|++++|.| +++.
T Consensus 153 ~i~~l~~i~~l~~~~g~~livD--e~~~ 178 (392)
T PLN03227 153 TLAPLKELVALKEEFHYRLILD--ESFS 178 (392)
T ss_pred cccCHHHHHHHHHHcCCEEEEE--Cccc
Confidence 7 7899999999999999 8875
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.1e-10 Score=97.23 Aligned_cols=122 Identities=16% Similarity=0.181 Sum_probs=86.9
Q ss_pred CccCcCCCC--cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH-
Q psy6266 44 NHEYLPVLG--LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF- 120 (218)
Q Consensus 44 ~~~Y~~~~G--~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~- 120 (218)
.+.|+...+ ..+|++.++++. + . +.+ +++.+++.|+.+++. + +.+||+|++++|.|+.....+
T Consensus 38 ~~~Y~r~~~p~~~~le~~la~l~-g-~-------~~~--l~~~sG~~al~~~l~-l--l~~Gd~Vl~~~~~y~~~~~~~~ 103 (378)
T TIGR01329 38 PYDYTRSGNPTRTALESLLAKLD-K-A-------DRA--FAFSSGMAALDVITR-L--LNNGDEIIAGDDLYGGTDRLLT 103 (378)
T ss_pred CCccCCCCChHHHHHHHHHHHHh-C-C-------CcE--EEECCHHHHHHHHHH-H--hCCCCEEEEcCCCchHHHHHHH
Confidence 356876522 456666666654 2 1 222 466777778877654 3 579999999999999876543
Q ss_pred ---HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceee
Q psy6266 121 ---LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 121 ---~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y 192 (218)
+..|+ +++.++. .|++.+++.++ +++.+++..+|+||||. +|+++|+++++++|.| .++
T Consensus 104 ~~~~~~G~-~v~~vd~-------~d~~~le~~i~---~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD--~a~ 170 (378)
T TIGR01329 104 QVVPRSGV-VVVHVDT-------TDLDKVKAALG---PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVD--NTM 170 (378)
T ss_pred HHHHHcCc-EEEEeCC-------CCHHHHHHhcC---cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEE--CCC
Confidence 44687 7777643 26777877774 45566666799999997 7899999999999999 665
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.3e-10 Score=99.67 Aligned_cols=116 Identities=12% Similarity=0.126 Sum_probs=84.0
Q ss_pred CcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH----hCCCc
Q psy6266 52 GLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN----AGFTE 127 (218)
Q Consensus 52 G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~----~g~~~ 127 (218)
-..+|.++++++..+ . . .+.+.+|++|+.++++++ +.+||+|++++|.|+.-...+.. .|. +
T Consensus 59 t~~~Le~~lA~l~g~-~--------~--~l~~ssG~~Ai~~al~al--~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi-~ 124 (425)
T PRK06084 59 TNDVLEQRVAALEGG-V--------G--ALAVASGMAAITYAIQTI--AEAGDNIVSVAKLYGGTYNLLAHTLPRIGI-E 124 (425)
T ss_pred hHHHHHHHHHHHhCC-C--------c--eeEehhHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHHhccccee-E
Confidence 356888888877532 1 1 247788889999998876 67999999999999854433332 233 3
Q ss_pred ceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 128 AREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 128 ~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+..++ ..|++.+++.+.+ ++.+++..+|+||||. +|.++|+++++++|.| ++|.
T Consensus 125 v~~~d-------~~d~e~le~ai~~---~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD--~a~a 183 (425)
T PRK06084 125 TRFAA-------HDDIAALEALIDE---RTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVD--NTVA 183 (425)
T ss_pred EEEEC-------CCCHHHHHHHhcc---CCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEE--CCCc
Confidence 33331 2378888888853 3444555789999998 7999999999999999 7776
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.6e-09 Score=95.21 Aligned_cols=124 Identities=14% Similarity=0.120 Sum_probs=91.7
Q ss_pred ccCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH--
Q psy6266 45 HEYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF-- 120 (218)
Q Consensus 45 ~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~-- 120 (218)
+.|. +..-..+|.++++++.-+ +. .+++.+|++|+.+++.++ +.+||+|++++|.|+.....+
T Consensus 32 ~~y~r~~~p~~~~le~~la~l~g~---------~~--a~~~~sG~~Ai~~~l~~l--~~~gd~Vl~~~~~y~~~~~~~~~ 98 (369)
T cd00614 32 YIYSRIGNPTVDALEKKLAALEGG---------EA--ALAFSSGMAAISTVLLAL--LKAGDHVVASDDLYGGTYRLFER 98 (369)
T ss_pred ceeECCCChhHHHHHHHHHHHHCC---------CC--EEEEcCHHHHHHHHHHHH--cCCCCEEEECCCCcchHHHHHHH
Confidence 4465 556678999999887532 12 357788899999988876 679999999999998865433
Q ss_pred --HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 121 --LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 121 --~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+..|+ ++..++. .|++.+++.++ +++.+++..+|+||||. +|.++|++++++++.| ++|.
T Consensus 99 ~~~~~g~-~~~~v~~-------~d~~~l~~~i~---~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD--~t~~ 165 (369)
T cd00614 99 LLPKLGI-EVTFVDP-------DDPEALEAAIK---PETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVD--NTFA 165 (369)
T ss_pred HHhhcCe-EEEEeCC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE--CCCc
Confidence 35566 6666533 15677777774 24455556789999997 8999999999999999 7775
Q ss_pred c
Q psy6266 194 G 194 (218)
Q Consensus 194 ~ 194 (218)
.
T Consensus 166 ~ 166 (369)
T cd00614 166 T 166 (369)
T ss_pred c
Confidence 4
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.1e-09 Score=92.81 Aligned_cols=136 Identities=14% Similarity=0.061 Sum_probs=89.5
Q ss_pred CchHHHHHHHHHhhcCCCCccCc-CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCC
Q psy6266 26 VLPVVRQAEKELAADDSLNHEYL-PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYT 104 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd 104 (218)
-.|.|++|..+.+++ |. +..=..+|++.+++++ + .+++++ ++++|+++|+..++.++ ++|||
T Consensus 34 ~~~~~~~~~~~~~~~------~~g~~~~~~~Le~~lA~~~-g------~~~e~i--lv~~gg~~a~~~~~~al--~~~gd 96 (346)
T TIGR03576 34 GGFKIDEEDLELLET------YVGPAIFEEKVQELGREHL-G------GPEEKI--LVFNRTSSAILATILAL--EPPGR 96 (346)
T ss_pred CChhHHHHHHHHHHH------hcCCHHHHHHHHHHHHHHc-C------CCcceE--EEECCHHHHHHHHHHHh--CCCCC
Confidence 355677766665533 31 1122344444554443 2 334554 69999999999999887 68999
Q ss_pred eEEec---CCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--------HH
Q psy6266 105 TFYYS---KPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--------QV 173 (218)
Q Consensus 105 ~V~i~---~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--------~l 173 (218)
+|+++ .|+|++|...+++.|+ +++.+ . +++.+ +.. +++.+++. +++||+|. +|
T Consensus 97 ~Vli~~~d~p~~~s~~~~~~l~ga-~~~~~----~-----~l~~l----~~~-~~~~lIii-tg~s~~G~v~~~~~L~~i 160 (346)
T TIGR03576 97 KVVHYLPEKPAHPSIPRSCKLAGA-EYFES----D-----ELSEL----KKI-DGTSLVVI-TGSTMDLKVVSEEDLKRV 160 (346)
T ss_pred EEEECCCCCCCchhHHHHHHHcCC-EEecc----C-----CHHHH----hhC-cCceEEEE-ECCCCCCcccCHHHHHHH
Confidence 99975 4799999999999998 65322 1 23332 211 23333333 56788885 67
Q ss_pred HHHhhcCeEEEeeCCceeeccCC
Q psy6266 174 AHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
++++++++++++.| ++|....
T Consensus 161 ~~la~~~~~~livD--EAy~~~~ 181 (346)
T TIGR03576 161 IKQAKSKEAIVLVD--DASGARV 181 (346)
T ss_pred HHHHHHcCCEEEEE--CCccccc
Confidence 78889999999999 9998654
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=95.11 Aligned_cols=116 Identities=11% Similarity=0.138 Sum_probs=82.3
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g~~~~ 128 (218)
...|+++++++.-. . . .+.+..|+.|+.+++. + +.|||+|++++|.|++.... ++..|+ ++
T Consensus 52 ~~~Le~~la~l~g~-~--------~--al~~~SG~~Al~~~l~-~--l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi-~v 116 (380)
T PRK06176 52 RFALEELIADLEGG-V--------K--GFAFASGLAGIHAVFS-L--FQSGDHVLLGDDVYGGTFRLFDKVLVKNGL-SC 116 (380)
T ss_pred HHHHHHHHHHHhCC-C--------C--EEEECCHHHHHHHHHH-H--cCCCCEEEEcCCChhHHHHHHHHHHHhcCe-EE
Confidence 67788888877533 1 1 2355666778876553 3 57999999999999865433 344566 55
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..++. .|.+.+++++. +++.+++..+|+||||. +|.++|+++++++|.| .+|...
T Consensus 117 ~~vd~-------~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD--~t~a~~ 176 (380)
T PRK06176 117 TIIDT-------SDLSQIKKAIK---PNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVD--NTFATP 176 (380)
T ss_pred EEcCC-------CCHHHHHHhcC---cCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEE--CCcccc
Confidence 55432 36777877774 34555666789999997 7999999999999999 887643
|
|
| >KOG0633|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.9e-10 Score=91.89 Aligned_cols=115 Identities=10% Similarity=0.048 Sum_probs=91.0
Q ss_pred cCCCceEEEEeccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHh
Q psy6266 73 LREGRAFGVQTLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLV 151 (218)
Q Consensus 73 ~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~ 151 (218)
+++++++ +.+|+.+.+.++.++. +.|| +.++..+|+|+-|.--....++ .++.+|+. . .|.++.+.+.+.++
T Consensus 84 Lt~dnic--~GvGsDE~ID~iiR~~--c~PGkeKIl~cPPtysMY~v~A~iNd~-eVvkvpl~-p-dF~lnvdai~evl~ 156 (375)
T KOG0633|consen 84 LTSDNIC--VGVGSDELIDLIIRCV--CDPGKEKILDCPPTYSMYVVDAAINDA-EVVKVPLN-P-DFSLNVDAIAEVLE 156 (375)
T ss_pred CCccceE--EecCcHHHHHHHHhhe--ecCCccceeecCCcceeEEEEeecCCc-eEEEecCC-C-CccccHHHHHHHHh
Confidence 6777764 8899999999998865 6799 9999999999999866666777 88999883 3 68999999999887
Q ss_pred cCCCCcEEEEcccCCCCcHH-----HHHHHhhcC-eEEEeeCCceeeccCCC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ-----QVAHMVDKH-HVYLLRSGRINMCGLTT 197 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~-~i~ii~D~r~~y~~l~~ 197 (218)
.. .+.++++..||+||||. .|.++.+.. +..++.| |+|-+|+-
T Consensus 157 ~d-s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvD--EAYidFsg 205 (375)
T KOG0633|consen 157 LD-SKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVD--EAYIDFSG 205 (375)
T ss_pred cc-ccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEe--eeeEeecc
Confidence 53 34556777899999998 455555432 5788888 99988755
|
|
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.01 E-value=5.3e-09 Score=91.38 Aligned_cols=146 Identities=12% Similarity=-0.053 Sum_probs=96.6
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
...+.+.|.+|+..-. .+ +.+ ..=+.++|+.+++++ + .+++...+++|.|+++++..++..+ +
T Consensus 11 p~~~~~~v~~~~~~~~-----~~-~~~~~~~~~~~~r~~la~l~-~------~~~~~~~i~~t~~~t~al~~~~~~l--~ 75 (363)
T TIGR02326 11 PLTTSRTVKEAMLFDW-----CT-WDSDYNIVVEQIRQQLLALA-T------AEEGYTSVLLQGSGTFAVEAVIGSA--V 75 (363)
T ss_pred CCCCCHHHHHHhCCCC-----CC-CChHHHHHHHHHHHHHHHHh-C------CCCCceEEEEcCCCHHHHHHHHHhc--C
Confidence 3566778887643211 11 111 001345566666554 3 2222112468999999999988776 5
Q ss_pred cCCCeEEecCCCchhH--HHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HH
Q psy6266 101 LNYTTFYYSKPTWENH--RLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~y--~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l 173 (218)
.+||.+++..+.+.+. ..+++..|+ +++.++.. +...+|++.+++.+++. ++..++....++||||. +|
T Consensus 76 ~~~~~vlv~~~~~~~~~~~~~a~~~g~-~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~i~~I 151 (363)
T TIGR02326 76 PKDGKLLVVINGAYGARIVQIAEYLGI-PHHVVDTG--EVEPPDVVEVEAILAAD-PAITHIALVHCETTTGILNPIEAV 151 (363)
T ss_pred CCCCeEEEEeCChhhHHHHHHHHHcCC-ceEEEeCC--CCCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccCcHHHH
Confidence 6888877766655443 355677898 88888762 34568999999988753 22333444567999998 79
Q ss_pred HHHhhcCeEEEeeC
Q psy6266 174 AHMVDKHHVYLLRS 187 (218)
Q Consensus 174 ~~l~~~~~i~ii~D 187 (218)
.++|++++++++.|
T Consensus 152 ~~l~~~~g~~livD 165 (363)
T TIGR02326 152 AKLAHRHGKVTIVD 165 (363)
T ss_pred HHHHHHcCCEEEEE
Confidence 99999999999999
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.00 E-value=3.2e-09 Score=95.33 Aligned_cols=122 Identities=18% Similarity=0.210 Sum_probs=90.5
Q ss_pred ccCcCCCC--cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH--
Q psy6266 45 HEYLPVLG--LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF-- 120 (218)
Q Consensus 45 ~~Y~~~~G--~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~-- 120 (218)
+.|+-..+ ..+|++.++++.-+ . . .+.|.+++.|+.+++.++ +.+||+|++++..|+.-...+
T Consensus 56 ~~y~R~~~p~~~~le~~lA~l~g~-~--------~--av~~sSGt~Al~~al~~l--l~~Gd~Vi~~~~~y~~t~~~~~~ 122 (433)
T PRK08134 56 HVYSRISNPTVAVLEERVAALEGG-V--------G--AIATASGQAALHLAIATL--MGAGSHIVASSALYGGSHNLLHY 122 (433)
T ss_pred ceeecCcChHHHHHHHHHHHHhCC-C--------c--EEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCccHHHHHHHHH
Confidence 34543322 67888888877643 2 1 257899999999988776 679999999999998654444
Q ss_pred --HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceee
Q psy6266 121 --LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 121 --~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y 192 (218)
+..|+ +++.++. + |.+.+++.|. +++++++..+++||||. +|.++|+++++++|.| .++
T Consensus 123 ~l~~~Gi-~v~~vd~---~----d~~~l~~~i~---~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD--~t~ 188 (433)
T PRK08134 123 TLRRFGI-ETTFVKP---G----DIDGWRAAIR---PNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVD--STF 188 (433)
T ss_pred HHhhCCe-EEEEECC---C----CHHHHHHhcC---CCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEE--CCC
Confidence 34677 7777643 1 6778888775 34555566689999997 7999999999999999 554
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.7e-09 Score=93.42 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=71.1
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH-----HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcE
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL-----VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSV 158 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 158 (218)
.+|+.|+.+++.++ +.|||+|++++|+|+.|.. .+...|+ +++.++.. .+.+.+|++.+++.+++. ++.
T Consensus 94 ~sgt~al~~~l~~l--~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~d~~~l~~~i~~~--~~k 167 (416)
T PRK00011 94 HSGSQANAAVYFAL--LKPGDTILGMDLAHGGHLTHGSPVNFSGKLY-NVVSYGVD-EETGLIDYDEVEKLALEH--KPK 167 (416)
T ss_pred CCchHHHHHHHHHh--cCCCCEEEEeccccCCcccccccccccccee-eEeecCcC-cccCCcCHHHHHHHHHhc--CCC
Confidence 35678888888776 6899999999999987532 1233356 66666652 234678999999988642 233
Q ss_pred EEEcccCCCCcHH---HHHHHhhcCeEEEeeCCceee
Q psy6266 159 IILHACAHNPTAQ---QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 159 iil~~~p~NPTG~---~l~~l~~~~~i~ii~D~r~~y 192 (218)
+++.+.++||+.. +|.++|+++++++|.| +++
T Consensus 168 ~v~~~~~~~~~~~~~~~I~~la~~~~~~livD--~a~ 202 (416)
T PRK00011 168 LIIAGASAYSRPIDFKRFREIADEVGAYLMVD--MAH 202 (416)
T ss_pred EEEECCCcCCCccCHHHHHHHHHHcCCEEEEE--Ccc
Confidence 3333445666543 7899999999999999 764
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.1e-08 Score=90.58 Aligned_cols=117 Identities=9% Similarity=0.079 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhH----HHHHHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENH----RLVFLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y----~~~~~~~g~~~~ 128 (218)
..+|+++++++..+ . . .+++.+|+.|+.+++.++ +.|||+|++++|.|+.- ...++..|+ ++
T Consensus 65 ~~~le~~lA~l~g~-~--------~--av~~~sG~~Ai~~al~al--~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~-~v 130 (389)
T PRK05968 65 VRAFEEMLAKLEGA-E--------D--ARGFASGMAAISSTVLSF--VEPGDRIVAVRHVYPDAFRLFETILKRMGV-EV 130 (389)
T ss_pred HHHHHHHHHHHhCC-C--------c--EEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHHcCc-eE
Confidence 57899999887533 1 1 236677788988877665 67999999999999863 345566788 77
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+.++. .|.+.+++.+. + +.+++..+|+||++. +|.++|++++++++.| .+|....
T Consensus 131 ~~vd~-------~d~~~l~~~i~---~-tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD--~a~a~~~ 190 (389)
T PRK05968 131 DYVDG-------RDEEAVAKALP---G-AKLLYLESPTSWVFELQDVAALAALAKRHGVVTMID--NSWASPV 190 (389)
T ss_pred EEeCC-------CCHHHHHHhcc---c-CCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEE--CCCcchh
Confidence 76632 26677777662 2 234444679999986 7899999999999999 7776543
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-08 Score=87.38 Aligned_cols=163 Identities=13% Similarity=-0.003 Sum_probs=101.2
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC-c----cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN-H----EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~----~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|.++||++--.|- | ....|.|++|..+.++..+.. . .|....-..+|.+.++++... +. .
T Consensus 44 ~~~~~~~~sn~yl---g-l~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~---------~~--~ 108 (402)
T TIGR01821 44 AKDVTVWCSNDYL---G-MGQHPEVLQAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGK---------ES--A 108 (402)
T ss_pred CeeEEEeEccCcC---C-CCCCHHHHHHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCC---------Ce--E
Confidence 3677888777663 3 455777888877666431111 1 122223356788888776521 12 2
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC-CCcEE
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP-DNSVI 159 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~~i 159 (218)
+.+..|++|...++.++....+++.|+.....++.....++..|. ++..++. .|++.+++.+.... +++.+
T Consensus 109 l~~~sG~~an~~ai~~l~~~~~~~~v~~~~~~h~s~~~~~~~~g~-~~~~~~~-------~d~~~l~~~l~~~~~~~~~~ 180 (402)
T TIGR01821 109 LVFTSGYVANDATLATLAKIIPGCVIFSDELNHASMIEGIRHSGA-EKFIFRH-------NDVAHLEKLLQSVDPNRPKI 180 (402)
T ss_pred EEECchHHHHHHHHHHhhCCCCCCEEEEcchHhHHHHHHHHHcCC-eEEEECC-------CCHHHHHHHHHhccCCCCeE
Confidence 355556777777666553223677776665566555555565665 4443321 25566666665332 24556
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++..+++||||. +|.++|++|++++|.| ++|.
T Consensus 181 v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livD--ea~~ 217 (402)
T TIGR01821 181 IAFESVYSMDGDIAPIEEICDLADKYGALTYLD--EVHA 217 (402)
T ss_pred EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEe--Cccc
Confidence 666789999997 7999999999999999 8877
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=9.3e-09 Score=92.35 Aligned_cols=112 Identities=10% Similarity=0.096 Sum_probs=86.1
Q ss_pred EEEeccChh-HHHHHHHHHHHhc-CCCeEEecCCCchhHHHHHHHhCCCcceeEec-cCCcCccccHHHHHHHHhcCCCC
Q psy6266 80 GVQTLSGTG-ALRVGAEFLHRIL-NYTTFYYSKPTWENHRLVFLNAGFTEAREYRY-WNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 80 ~~~t~G~~~-al~~~~~~l~~l~-~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~-~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
.+.++|+++ ++.+++.++.... +||+|++|.=+|.+-...+..+|+ +|+.++. .+++.+.+|.+.++++|++.+++
T Consensus 126 a~~v~~~Tg~al~laL~alr~~~~~gd~VI~p~~th~S~~kAi~~~G~-~pv~Vd~~~d~~~~~iD~e~Le~aIt~~~~k 204 (444)
T TIGR03531 126 AFVVPLATGMSLSLCLSALRHKRPKAKYVIWPRIDQKSCIKAISTAGF-EPRVIETVLDGDELTTDVEDIERAIEEIGPD 204 (444)
T ss_pred EEEECCHHHHHHHHHHHHcCCcCCCCCEEEEECcChHHHHHHHHHcCC-eEEEeeeeecCcCCCcCHHHHHHHHHhccCC
Confidence 457888885 7777665543111 589999999999999999999999 9999985 34556788999999999754335
Q ss_pred cEEEEcccCC-CCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 157 SVIILHACAH-NPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 157 ~~iil~~~p~-NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
.+++++++|+ .++|. +|+++|++|+||++.| .+|..
T Consensus 205 ai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvD--aAyg~ 246 (444)
T TIGR03531 205 NILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVN--NAYGL 246 (444)
T ss_pred CEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEE--CcCcC
Confidence 5555555554 44443 8999999999999999 99985
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.6e-08 Score=86.69 Aligned_cols=177 Identities=12% Similarity=0.093 Sum_probs=103.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++.......+.++.-..+|-+.++++. + .++ ++.+
T Consensus 38 ~~g~~~lD~~~~~~~~~~G--h~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~--------~~~--~~~~ 104 (401)
T PRK00854 38 TDGNRYLDCLSAYSAVNQG--HCHPKILAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALT-G--------SHK--VLPM 104 (401)
T ss_pred CCCCEEEEcCcchhhccCC--CCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhhC-C--------CCE--EEEe
Confidence 4566777765553222233 3367788877666543111112233333445555555432 2 133 3588
Q ss_pred ccChhHHHHHHHHHHHh-------cCC-CeEEecCCCchhHHHHHHHhCCCcceeEeccC---CcC---ccccHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRI-------LNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRYWN---PEK---RAVDFTGMYED 149 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l-------~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~---~~~---~~~d~~~~~~~ 149 (218)
.+|++|...++.++... .+| ++|++.+-+|......+...+. .+.....+. ... ...|++.+++.
T Consensus 105 ~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~HG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 183 (401)
T PRK00854 105 NSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFHGRTLSIVGFST-DPDARGGFGPFTPGFRVVPFGDAEALEAA 183 (401)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcCCccHHHHhccC-CccccccCCCCCCCeEEeCCCCHHHHHHH
Confidence 89999999988876432 124 6777777776553322223333 222110000 000 01377888877
Q ss_pred HhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+. +++.+++.++++||||. +|.++|++|++++|.| |+|.++.+..
T Consensus 184 i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~D--Ev~~g~g~~g 237 (401)
T PRK00854 184 IT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILD--EIQTGLGRTG 237 (401)
T ss_pred hC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--chhhCCCCCc
Confidence 74 34566777899999996 6889999999999999 9999875543
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=9.3e-09 Score=86.42 Aligned_cols=164 Identities=14% Similarity=0.068 Sum_probs=107.8
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHH----HhhcC---CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKE----LAADD---SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~----~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
.|+|+-|. |...|.+.+..+. ++.+. +....|..++|...|.+++++.+.+ +++-.+++++|.
T Consensus 32 ~imLggGN-------Pa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~-~ygwnit~~NIa-- 101 (417)
T COG3977 32 AIMLGGGN-------PARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRR-EYGWNITAQNIA-- 101 (417)
T ss_pred ceeeCCCC-------cccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHH-HhCCCCccceee--
Confidence 77888773 4556666665543 33320 1234799999999999999999977 777668888774
Q ss_pred EeccChhHHHHHHHHHHH-hcCC--CeEEec-CCCchhHHHHHHHhCCCcceeEecc------CCcCc--cccHHHHHHH
Q psy6266 82 QTLSGTGALRVGAEFLHR-ILNY--TTFYYS-KPTWENHRLVFLNAGFTEAREYRYW------NPEKR--AVDFTGMYED 149 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~-l~~g--d~V~i~-~P~y~~y~~~~~~~g~~~~~~~~~~------~~~~~--~~d~~~~~~~ 149 (218)
.|.|++.+++-++.++.- ...| ..|++| .|-|-.|.. +|+..-..+.+. .+..| ..||+.+.-
T Consensus 102 lTnGSQs~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d----~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~i- 176 (417)
T COG3977 102 LTNGSQSAFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYAD----AGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLHI- 176 (417)
T ss_pred ecCCccchHHHHHHHhcCccCCCcceeEeeccChhhccccc----cccCccceeeccCCcccccccceeeccCHHHccc-
Confidence 999999999988876532 1123 345554 777877763 344112222221 11111 225555432
Q ss_pred HhcCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeec
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.+..-.++.+-|.||||- ++.++|++|+|.+|-| -+|.
T Consensus 177 ----~e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliID--nAYg 222 (417)
T COG3977 177 ----GESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIID--NAYG 222 (417)
T ss_pred ----ccccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEe--cccC
Confidence 233445667899999996 6889999999999999 7775
|
|
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-07 Score=82.55 Aligned_cols=158 Identities=17% Similarity=0.115 Sum_probs=111.5
Q ss_pred EeCCCCCccCchHHHHHHHHHhhc-CCCCc--cCcCC----CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAAD-DSLNH--EYLPV----LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGA 89 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~--~Y~~~----~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~a 89 (218)
|-|.-.....|..|.+|..+.... ....+ .|... .-+++.|+++++++.. . +.++| +-|.|.|++
T Consensus 25 ylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~a-~-----~~~eI--vft~~tT~a 96 (405)
T COG0520 25 YLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLNA-D-----SSDEI--VFTRGTTEA 96 (405)
T ss_pred EecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhCC-C-----CCCeE--EEeCChhHH
Confidence 434444445688888887765532 11122 12221 1357888888887753 1 12444 599999999
Q ss_pred HHHHHHHHHH-hcCCCeEEecCCCchhHH----HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 90 LRVGAEFLHR-ILNYTTFYYSKPTWENHR----LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 90 l~~~~~~l~~-l~~gd~V~i~~P~y~~y~----~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+.+++..+.. +.+||+|++.+=-+++-. ...+..|+ +++.+|.. +...++.+.++..+ +++++++..+.
T Consensus 97 ln~va~~l~~~~~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga-~v~~i~~~--~~g~~~~~~~~~~i---~~~Tklvais~ 170 (405)
T COG0520 97 LNLVARGLGRSLKPGDEIVVSDLEHHSNIVPWQELAKRTGA-KVRVIPLD--DDGLLDLDALEKLI---TPKTKLVALSH 170 (405)
T ss_pred HHHHHHHhhhhhcCCCEEEEccCcchhhHHHHHHHHHhcCc-EEEEEecC--CCCCcCHHHHHHhc---CCCceEEEEEC
Confidence 9999887643 568999999988776644 23344588 89999874 34677888888866 36677777788
Q ss_pred CCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 165 AHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
-+|-||. +|+++|++++++++.|+
T Consensus 171 vSn~tG~~~pv~~I~~la~~~ga~v~VDa 199 (405)
T COG0520 171 VSNVTGTVNPVKEIAELAHEHGALVLVDA 199 (405)
T ss_pred ccccccccchHHHHHHHHHHcCCEEEEEC
Confidence 8999998 89999999999999995
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=85.20 Aligned_cols=180 Identities=14% Similarity=0.031 Sum_probs=114.3
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
...|...||++-|.....-| ...|.|.+|..+.+++ ..+.|.+..+..+|++.++++.-+ .+++ +.
T Consensus 46 d~dG~~~lD~~~g~~~~~lG--h~~p~i~~a~~~~~~~--~~~~~~~~~~~~~la~~L~~~~~~--------~~~v--~~ 111 (426)
T PRK00062 46 DVDGNEYIDYVGSWGPMILG--HAHPEVVEAVIEAAEK--GLSFGAPTELEVELAELVIELVPS--------IEMV--RM 111 (426)
T ss_pred eCCCCEEEEcccchhhhhcC--CCCHHHHHHHHHHHHh--CCcCCCCCHHHHHHHHHHHHhCCC--------CCEE--EE
Confidence 46788999999886433455 3678888887776654 345577888888888888876422 2344 58
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh-CCC-----------cceeEeccCCcCccccHHHHHHHH
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA-GFT-----------EAREYRYWNPEKRAVDFTGMYEDL 150 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~-g~~-----------~~~~~~~~~~~~~~~d~~~~~~~l 150 (218)
|.+|++|...++++.......++|+..+++|..+...+... |.. .+..++.........|.+.+++.+
T Consensus 112 ~~sGseA~e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i 191 (426)
T PRK00062 112 VNSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELF 191 (426)
T ss_pred ecCHHHHHHHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHH
Confidence 89999999998887544444789999999999986333221 100 000000000000012677777777
Q ss_pred hcCCCC-cEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 151 VNAPDN-SVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 151 ~~~~~~-~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+...+ ..+++-+-++| |.+. ++.++|++|++++|.| |+|.|+-++
T Consensus 192 ~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~~G~r~g 246 (426)
T PRK00062 192 EEYGDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFD--EVMTGFRVA 246 (426)
T ss_pred HhCCCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--echhccccC
Confidence 542222 23444444554 1222 7999999999999999 999988443
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-07 Score=83.19 Aligned_cols=113 Identities=18% Similarity=0.278 Sum_probs=88.4
Q ss_pred ceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 77 RAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 77 ~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
++....|.|||++...++.+.+.+.++++|++++-..++-...++..|. +.+.++.. + ...+|.+.+++.|.+...+
T Consensus 84 ~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H~Sv~ka~~~lg~-~~~~V~~~-~-~g~id~~~L~~~i~~~~~~ 160 (380)
T PRK02769 84 ESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTHYSVSKIARLLRI-KSRVITSL-P-NGEIDYDDLISKIKENKNQ 160 (380)
T ss_pred CCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCceehHHHHHHHcCC-CCceeccC-C-CCcCcHHHHHHHHHhCCCC
Confidence 3334689999999766554333346789999999998888888888898 78888773 3 4568999999999764344
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCe---EEEeeCCceeecc
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHH---VYLLRSGRINMCG 194 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~---i~ii~D~r~~y~~ 194 (218)
++++..+..+|+||. +|.++|++++ +|+..| -++.+
T Consensus 161 t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVD--aA~gg 204 (380)
T PRK02769 161 PPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHAD--AALSG 204 (380)
T ss_pred cEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEE--ecccc
Confidence 667777789999998 8999999997 799999 66665
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=82.62 Aligned_cols=163 Identities=13% Similarity=0.022 Sum_probs=98.0
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC-----ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN-----HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-----~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|.+++|++-=.| -| ....|.|++|..+.++..+.. ..|.+..-..+|++.++++. + . ++ .
T Consensus 45 ~~~~~~~~s~dy---lg-l~~~p~v~~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~-g-~------~~-~-- 109 (407)
T PRK09064 45 EREVTVWCSNDY---LG-MGQHPKVIEAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLH-G-K------EA-A-- 109 (407)
T ss_pred CceEEEEECCCC---cC-CCCCHHHHHHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHh-C-C------Cc-E--
Confidence 357788776655 23 345677888877655431111 11333444677888888764 2 1 12 2
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC-CCcEE
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP-DNSVI 159 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~~i 159 (218)
++...|.++...++.++....+++.|+.....+.+....++..+. +...++. .|++.+++.++... +++.+
T Consensus 110 ~~~~sG~~an~~ai~~l~~~~~~~~i~~~~~~h~s~~~~~~~~~~-~~~~~~~-------~d~~~le~~l~~~~~~~~~~ 181 (407)
T PRK09064 110 LVFTSGYVSNDATLSTLAKLIPDCVIFSDELNHASMIEGIRRSRC-EKHIFRH-------NDVAHLEELLAAADPDRPKL 181 (407)
T ss_pred EEECcHHHHHHHHHHHHhCCCCCCEEEEeCcchHHHHHHHHHcCC-cEEEECC-------CCHHHHHHHHHhccCCCCeE
Confidence 243444455454444442223666666665555555455565666 5444322 25666666665332 34556
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++..+++||||. +|.++|+++++++|.| |+|.
T Consensus 182 v~~~~v~s~~G~~~~l~~i~~l~~~~~~~livD--Ea~~ 218 (407)
T PRK09064 182 IAFESVYSMDGDIAPIAEICDLADKYNALTYLD--EVHA 218 (407)
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHcCCEEEEE--CCCc
Confidence 666789999996 8999999999999999 9987
|
|
| >KOG1411|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=4e-09 Score=89.94 Aligned_cols=151 Identities=23% Similarity=0.322 Sum_probs=102.9
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceE--EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCc
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAF--GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTE 127 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~--~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~ 127 (218)
..|.+-|..+...++.| ++.|||. .+++..+.+|..+-+|+... -+-++..+|.++... ...-+++
T Consensus 260 ~~g~~~~laQSyAKNMG------LYgERvGa~svvc~~ad~A~rV~SQlk~l---iRpmYSnPP~hGArI---v~~Il~d 327 (427)
T KOG1411|consen 260 EDGHEILLAQSYAKNMG------LYGERVGALSVVCKDADEAKRVESQLKIL---IRPMYSNPPLHGARI---VATILSD 327 (427)
T ss_pred HcCCceEeehhhhhhcc------hhhhccceeEEEecCHHHHHHHHHHHHHH---hcccccCCCccchhh---hhhccCC
Confidence 33444444455555555 5567774 45778888899999886533 366788888877632 3333446
Q ss_pred ceeEeccCCcCccc--cHHHHHHHHhcC-----CCC-------cEEEEcccCCCCcHHHHHHHhhcCeEEEeeCCceeec
Q psy6266 128 AREYRYWNPEKRAV--DFTGMYEDLVNA-----PDN-------SVIILHACAHNPTAQQVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 128 ~~~~~~~~~~~~~~--d~~~~~~~l~~~-----~~~-------~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+..+..|..+...+ ++..++..|.+. .+. .+-++..+.-|| .|+..+.++++||+-.|||+.++
T Consensus 328 ~~l~~~W~~evk~MadRi~~mR~~L~d~L~~~gs~~~W~hI~~QIGMF~fTgl~p--eQv~~l~ke~~iYmT~dGRiS~a 405 (427)
T KOG1411|consen 328 PDLKNQWLGEVKGMADRIISMRQQLFDALEKEGSPGNWSHITKQIGMFCFTGLNP--EQVDWLTKEYHIYLTKDGRISMA 405 (427)
T ss_pred hHHHHHHHHHHHHHHHhhhhhHHHHhHHhhcCCCCccHHHHHHhhheeeecCCCH--HHHHHHHhhheeeeccCceEeec
Confidence 77777775544333 555666666542 111 123343444555 68889999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHcC
Q psy6266 194 GLTTQNLDHVAQAIHDAVTSI 214 (218)
Q Consensus 194 ~l~~~ni~~~~~a~~~~~~~~ 214 (218)
|++..|++|+|.||+++.++.
T Consensus 406 G~ss~nV~yLa~aih~vtk~~ 426 (427)
T KOG1411|consen 406 GLSSSNVPYLADAIHAVTKNT 426 (427)
T ss_pred cccccCCcccchhhHhHhcCC
Confidence 999999999999999997654
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-07 Score=81.32 Aligned_cols=177 Identities=12% Similarity=0.071 Sum_probs=107.6
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
...|...||+.-|.....-| ...|.|.+|..+.++. ..+ ....+..+++..+++++.. ... .++ ++.
T Consensus 25 d~~G~~~lD~~s~~~~~~lG--~~~p~v~~a~~~~~~~--~~~--~~~~~~~~~~~~la~~l~~-~~~----~~~--~~~ 91 (377)
T PRK02936 25 DNNGKTYLDFTSGIAVCNLG--HCHPTVTKAVQEQLDD--IWH--VSNLFTNSLQEEVASLLAE-NSA----GDL--VFF 91 (377)
T ss_pred eCCCCEEEECCcchhhccCC--CCCHHHHHHHHHHHHh--ccc--cccccCCHHHHHHHHHHHh-cCC----CCE--EEE
Confidence 35678888887775222345 3578888887776643 111 2234567899999998865 321 133 458
Q ss_pred eccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHH-HHHHhCCCcce---eEeccCCcCc--cccHHHHHHHHhcCCC
Q psy6266 83 TLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRL-VFLNAGFTEAR---EYRYWNPEKR--AVDFTGMYEDLVNAPD 155 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~-~~~~~g~~~~~---~~~~~~~~~~--~~d~~~~~~~l~~~~~ 155 (218)
+.+|++|...++++... .+| ++|++.+++|..... .....+. ... ..+....-.. ..|++.+++.+. +
T Consensus 92 ~~sG~~a~~~A~~~a~~-~~g~~~vi~~~~~~Hg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~ 166 (377)
T PRK02936 92 CNSGAEANEAALKLARK-HTGKSKIVTFEQSFHGRTFGTMSATGQ-EKIKEGFGPLLPGFTHVPFNDIKALKEVMN---E 166 (377)
T ss_pred eCCcHHHHHHHHHHHHH-hcCCCeEEEECCCcCCCcHHhhhccCC-ccccccCCCCCCCceEeCCCCHHHHHHhcc---C
Confidence 89999999988875432 345 679999999874321 1222221 111 0111000000 116777777664 2
Q ss_pred CcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 156 NSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+..+++..+.+|++|. +|.++|++|++++|.| |+|.++.+..
T Consensus 167 ~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~D--Ev~~g~g~~g 217 (377)
T PRK02936 167 EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIID--EVQTGIGRTG 217 (377)
T ss_pred CeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCcCc
Confidence 3344444455565543 7999999999999999 9999886553
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.9e-07 Score=83.36 Aligned_cols=157 Identities=12% Similarity=0.056 Sum_probs=107.7
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCC---C--cHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVL---G--LESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~---G--~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
++||.+--++.+.-|..+.++.+.+|..+.... ....+|.... | ...+++.++++.-. +. .++
T Consensus 80 ~vinatg~v~~tNlg~s~l~~~v~eav~~~~~~-~~~le~~l~~g~~g~r~~~~e~~lA~l~Ga---------e~--a~v 147 (464)
T PRK04311 80 PVINATGVVLHTNLGRALLSEAAIEAVTEAARG-YSNLEYDLATGKRGSRDRALAALLCALTGA---------ED--ALV 147 (464)
T ss_pred ceecCCccEEeccCCCCCCCHHHHHHHHHHHhc-ccccccchhhcccchHHHHHHHHHHHHhCC---------Ce--EEE
Confidence 789988777888888888889999998877643 1222333221 2 25777777766532 22 357
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchh------HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWEN------HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~------y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
+.+++.|+.+++.+ +.+||+|++++..+.. ....++..|+ +++.+... ...+.+.++++|. ++
T Consensus 148 v~sgtaAl~l~l~~---l~~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~-~l~~v~~~----~~t~~~dle~aI~---~~ 216 (464)
T PRK04311 148 VNNNAAAVLLALNA---LAAGKEVIVSRGELVEIGGAFRIPDVMRQAGA-RLVEVGTT----NRTHLRDYEQAIN---EN 216 (464)
T ss_pred ECCHHHHHHHHHHH---hCCCCEEEEcchhhhhcCcchhhHHHHHHCCc-EEEEECCC----CCCCHHHHHHhcC---cc
Confidence 77888888877754 4689999999864331 1234567788 88887542 1346777777775 34
Q ss_pred cEEEEcccCCCCc--H--H-----HHHHHhhcCeEEEeeC
Q psy6266 157 SVIILHACAHNPT--A--Q-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 157 ~~iil~~~p~NPT--G--~-----~l~~l~~~~~i~ii~D 187 (218)
+.+++...++||+ | . +|+++|++|+++++.|
T Consensus 217 TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD 256 (464)
T PRK04311 217 TALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYD 256 (464)
T ss_pred CeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEE
Confidence 5555556789993 4 2 7899999999999999
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.5e-07 Score=81.99 Aligned_cols=175 Identities=11% Similarity=0.100 Sum_probs=97.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++.......+....-..+|-+.++++. + .+++ +.+
T Consensus 37 ~~G~~~lD~~~g~~~~~lG--h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~--------~~~~--~~~ 103 (396)
T PRK04073 37 PEGNRYMDMLSAYSAVNQG--HRHPKIIQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLT-G--------KDMV--LPM 103 (396)
T ss_pred CCCCEEEEcCCCHHhccCC--CCCHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHhcC-C--------CCeE--EEc
Confidence 4566777776553222334 3467777776665543111111222222233333333321 1 1343 577
Q ss_pred ccChhHHHHHHHHHHHh-------cCC-CeEEecCCCchhHH-HHHHHhCCCcceeE---eccCCcCc---cccHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRI-------LNY-TTFYYSKPTWENHR-LVFLNAGFTEAREY---RYWNPEKR---AVDFTGMYE 148 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l-------~~g-d~V~i~~P~y~~y~-~~~~~~g~~~~~~~---~~~~~~~~---~~d~~~~~~ 148 (218)
.+|++|...++.+.+.. .+| ++|+..+-+|.... ..+...+. ..... +.. .... -.|++.+++
T Consensus 104 ~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~HG~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~d~~~l~~ 181 (396)
T PRK04073 104 NTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSE-EEYKRGFGPML-PGIKKIPYGDLEALKA 181 (396)
T ss_pred CChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcCCCCHHHHhhcCC-cccccCCCCCC-CCceEeCCCCHHHHHH
Confidence 88899988887765432 134 67777766665433 23332221 11100 000 0000 116777777
Q ss_pred HHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 149 DLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 149 ~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+. ++..+++.++++||||. +|.++|++|++++|.| |+|.++...
T Consensus 182 ~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D--Ev~~g~g~~ 235 (396)
T PRK04073 182 AIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIAD--EIQTGLGRT 235 (396)
T ss_pred hcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--cchhCCCcC
Confidence 664 34566667789999996 6889999999999999 999987554
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.4e-07 Score=81.94 Aligned_cols=132 Identities=16% Similarity=0.188 Sum_probs=83.8
Q ss_pred ccC-cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH--hc--C----------CCeEEec
Q psy6266 45 HEY-LPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR--IL--N----------YTTFYYS 109 (218)
Q Consensus 45 ~~Y-~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~--l~--~----------gd~V~i~ 109 (218)
..| .-..|+|+.|+-.++.+ + +++++| ..|++..+.+...++.. +. + .-+.+.|
T Consensus 62 RNY~G~l~Gipe~r~l~a~ll-g------v~~~~v----iv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCP 130 (425)
T PF12897_consen 62 RNYPGGLDGIPEARELFAELL-G------VPPENV----IVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCP 130 (425)
T ss_dssp TSS-S-SS--HHHHHHHHHHH-T------S-GGGE----EE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEE
T ss_pred cCCCCccCChHHHHHHHHHHh-C------CCHHHE----EEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEec
Confidence 369 89999999999888776 4 455664 35566666554443322 11 1 2467999
Q ss_pred CCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--------HHHHH-hhcC
Q psy6266 110 KPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--------QVAHM-VDKH 180 (218)
Q Consensus 110 ~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--------~l~~l-~~~~ 180 (218)
.|+|--|..+.+..|. +.+.+|+. + .++|++.+++.+.+-+..+-+++++.++||||. +++.+ ....
T Consensus 131 vPGYDRHFai~E~~Gi-emi~VpM~-~--dGPDmD~Ve~LV~~D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~ 206 (425)
T PF12897_consen 131 VPGYDRHFAITEHFGI-EMIPVPMT-E--DGPDMDMVEELVAEDPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAP 206 (425)
T ss_dssp ES--HHHHHHHHHCT--EEEEEEEE-T--TEE-HHHHHHHTHTSTTEEEEEE-SSS-TTT-----HHHHHHHHHS--SST
T ss_pred CCCchHHHHHHHhhCc-EEEecCCC-C--CCCCHHHHHHHHhcCCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCc
Confidence 9999999999999999 99999995 3 379999999988654444557888999999998 34444 1468
Q ss_pred eEEEeeCCceeec
Q psy6266 181 HVYLLRSGRINMC 193 (218)
Q Consensus 181 ~i~ii~D~r~~y~ 193 (218)
++-|+.| .+|.
T Consensus 207 DFRI~WD--NAY~ 217 (425)
T PF12897_consen 207 DFRIFWD--NAYA 217 (425)
T ss_dssp T-EEEEE---TTT
T ss_pred CeEEEee--cCce
Confidence 9999999 8886
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.7e-09 Score=89.74 Aligned_cols=132 Identities=26% Similarity=0.324 Sum_probs=90.3
Q ss_pred cCCCceEEEE--eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccc--cHHHHHH
Q psy6266 73 LREGRAFGVQ--TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAV--DFTGMYE 148 (218)
Q Consensus 73 ~~~~~v~~~~--t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~--d~~~~~~ 148 (218)
++.|||..+. +.-...+-.+..|+... -+..|..+|.|+... +... ++++.....|..+..++ ++..|+.
T Consensus 250 LYgERVGa~~vva~~~~~a~~v~sqlk~~---iR~~ySnPP~~Ga~v--va~I-L~~p~Lra~W~~El~~Mr~Ri~~mR~ 323 (396)
T COG1448 250 LYGERVGALSVVAEDAEEADRVLSQLKAI---IRTNYSNPPAHGAAV--VATI-LNNPELRAEWEQELEEMRQRILEMRQ 323 (396)
T ss_pred hhhhccceeEEEeCCHHHHHHHHHHHHHH---HHhccCCCchhhHHH--HHHH-hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778886543 33344455555554332 378899999988754 3333 44788888887665444 5555555
Q ss_pred HHhcC-----CCCc--EEEEc---ccCCCCcHHHHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHH
Q psy6266 149 DLVNA-----PDNS--VIILH---ACAHNPTAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDA 210 (218)
Q Consensus 149 ~l~~~-----~~~~--~iil~---~~p~NPTG~~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~ 210 (218)
.+.+. ++++ ++.-| ++...-|-.|+.++.++|+||++.+||++.+|++.+|++++|+||.++
T Consensus 324 ~lv~~L~~~~~~~~f~~i~~Q~GMFsy~Gls~~QV~rLree~~IY~v~sGRi~vaGl~~~ni~~va~ai~~v 395 (396)
T COG1448 324 ALVDALKALGAPRNFDFIISQRGMFSYTGLSPEQVDRLREEFGIYLVASGRINVAGLNTSNIDYVAKAIAAV 395 (396)
T ss_pred HHHHHHHhhCCCcccchHhhcCceeecCCCCHHHHHHHHHhccEEEecCCeeeeccCChhhHHHHHHHHHhh
Confidence 44321 2222 22222 244455666999999999999999999999999999999999999876
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.5e-07 Score=84.67 Aligned_cols=119 Identities=15% Similarity=0.097 Sum_probs=84.8
Q ss_pred cCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH---
Q psy6266 46 EYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF--- 120 (218)
Q Consensus 46 ~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~--- 120 (218)
.|+.. .-...|.+.++++..+ +. .+.+.+|+.|+..++.++ +.+||+|++++..|+.-...+
T Consensus 62 ~Ysr~~~p~~~~Le~~lA~l~g~---------~~--av~~sSG~aAi~~al~al--l~~Gd~Vv~~~~~y~~t~~~~~~~ 128 (436)
T PRK07812 62 IYTRIMNPTQDVVEQRIAALEGG---------VA--ALLLASGQAAETFAILNL--AGAGDHIVSSPRLYGGTYNLFHYT 128 (436)
T ss_pred cccCCCCchHHHHHHHHHHHhCC---------Ce--EEEEccHHHHHHHHHHHH--hCCCCEEEEeCCcchHHHHHHHHH
Confidence 46642 2346788888776533 11 357788899998888766 679999999998887754433
Q ss_pred -HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 121 -LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 121 -~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
...|+ +++.++ + ..|++.+++.+. +++.+++.-+|+||||. +|.++|+++++++|.|
T Consensus 129 l~~~Gi-~v~~vd----d--~~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD 191 (436)
T PRK07812 129 LPKLGI-EVSFVE----D--PDDLDAWRAAVR---PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVD 191 (436)
T ss_pred hhcCeE-EEEEEC----C--CCCHHHHHHhCC---CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE
Confidence 33565 555552 1 127788877774 44556666789999998 7999999999999999
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.1e-07 Score=80.81 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=97.0
Q ss_pred hHHHHH-HHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeE
Q psy6266 28 PVVRQA-EKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTF 106 (218)
Q Consensus 28 ~~v~~a-~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V 106 (218)
..+.++ ...+. . +...|..+....+|.+++++++-. +. ++.|.+|+.|+.+++.+. +.|||+|
T Consensus 50 ~aMs~~q~a~~~-~--GDe~yag~~s~~~lE~~va~~~G~---------~~--av~v~sGT~Al~ll~~l~--l~pGDeV 113 (450)
T TIGR02618 50 NAMSDKQWAGLM-M--GDEAYAGSRNFYHLERTVRELYGF---------KY--VVPTHQGRGAENLLSQIA--IKPGDYV 113 (450)
T ss_pred HHHHHHHHHHhh-h--cchhhcCCCcHHHHHHHHHHHHCC---------Ce--EEEcCCHHHHHHHHHHhC--CCCcCEE
Confidence 566665 22222 1 234699999999999999987632 22 468899999999876443 6799987
Q ss_pred EecCCCc-hhHHHHHHHhCCCcceeEecc--------CCcCccccHHHHHHHHhcCC-CC-cEEEEcccCCCCc-HH---
Q psy6266 107 YYSKPTW-ENHRLVFLNAGFTEAREYRYW--------NPEKRAVDFTGMYEDLVNAP-DN-SVIILHACAHNPT-AQ--- 171 (218)
Q Consensus 107 ~i~~P~y-~~y~~~~~~~g~~~~~~~~~~--------~~~~~~~d~~~~~~~l~~~~-~~-~~iil~~~p~NPT-G~--- 171 (218)
++|+| ..+...++..|+ .++.++.. .+..+.+|++.+++.|+... ++ +.+.+ ..++|-. |.
T Consensus 114 --psn~~f~Tt~ahIe~~Ga-v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~-e~t~N~~GG~pvs 189 (450)
T TIGR02618 114 --PGNMYFTTTRYHQEKNGA-TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICL-AVTVNLAGGQPVS 189 (450)
T ss_pred --CCceeHHHHHHHHHhCCe-EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEE-EEecccCCCeeCC
Confidence 77887 556666788888 77776431 12335679999999997531 12 22233 3356644 43
Q ss_pred -----HHHHHhhcCeEEEeeCC
Q psy6266 172 -----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 172 -----~l~~l~~~~~i~ii~D~ 188 (218)
++.++|++|++.++.|+
T Consensus 190 ~~~l~~I~elA~~~Gl~vi~Da 211 (450)
T TIGR02618 190 MANMREVRELCEAHGIKVFYDA 211 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEEEc
Confidence 78999999999999998
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.8e-07 Score=79.73 Aligned_cols=157 Identities=10% Similarity=0.036 Sum_probs=106.4
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC---CC--cHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV---LG--LESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~---~G--~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
.+||.+--++.+.-|..+.++.+.+|..+..+. ....+|.-. .| ...+++.++++.-. +. .++
T Consensus 75 ~vinatg~v~~tNlg~s~l~~~vieAv~~~~~~-y~~l~~~l~~g~~g~r~~~le~~lA~l~ga---------e~--alv 142 (454)
T TIGR00474 75 RVINATGVVLHTNLGRAPLAEEAIEAVTDAARG-YSNLEYDLETGKRGSRYSHVEGLLCELTGA---------ED--ALV 142 (454)
T ss_pred ceeCCCCcEEeccCCCCCCCHHHHHHHHHHHhc-ccchhccccccccchHHHHHHHHHHHHhCC---------Cc--EEE
Confidence 678877556777777777789999998877643 122233221 12 36788888876533 11 246
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhH------HHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENH------RLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y------~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
+.+++.|+.+++.+ +.+||+|++++-.++.| ...++..|+ +++.++.. ...+.+.+++++. ++
T Consensus 143 v~sg~aAi~l~l~~---l~~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~-~~~~v~~~----~~~~l~dle~aI~---~~ 211 (454)
T TIGR00474 143 VNNNAAAVLLALNT---LAKGKEVIVSRGELVEIGGSFRIPDVMEQSGA-KLVEVGTT----NRTHLKDYEDAIT---EN 211 (454)
T ss_pred ECCHHHHHHHHHHH---hCCcCEEEECCChhhhhcchhhHHHHHHHcCC-EEEEeCCC----CCCCHHHHHHhcC---cC
Confidence 67777788776644 46899999998765433 234566788 78777542 1246777877774 44
Q ss_pred cEEEEcccCCCCc--HH-------HHHHHhhcCeEEEeeC
Q psy6266 157 SVIILHACAHNPT--AQ-------QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 157 ~~iil~~~p~NPT--G~-------~l~~l~~~~~i~ii~D 187 (218)
+.+++...++||+ |. +|+++|++|+++++.|
T Consensus 212 T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD 251 (454)
T TIGR00474 212 TALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMED 251 (454)
T ss_pred CEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEE
Confidence 5555556789996 42 7999999999999999
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.1e-07 Score=82.67 Aligned_cols=121 Identities=17% Similarity=0.133 Sum_probs=85.0
Q ss_pred ccCcCCC--CcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH----H
Q psy6266 45 HEYLPVL--GLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR----L 118 (218)
Q Consensus 45 ~~Y~~~~--G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~----~ 118 (218)
..|+-.. -...|++.++++..+ . . .+.+.+|+.|+.+++..+ +.+||+|++++..|++.. .
T Consensus 61 ~~Y~r~~~pt~~~le~~la~l~g~-~-------~---~v~fsSG~~Ai~~al~~l--l~~Gd~VI~~~~~y~~t~~~~~~ 127 (437)
T PRK05613 61 PIYSRLTNPTVEALENRIASLEGG-V-------H---AVAFASGQAAETAAILNL--AGAGDHIVTSPRLYGGTETLFLV 127 (437)
T ss_pred ceeeCccChHHHHHHHHHHHHhCC-C-------e---EEEeCCHHHHHHHHHHHh--cCCCCEEEECCCccHHHHHHHHH
Confidence 3465432 246777777776532 1 1 346677778887766655 678999999999999764 3
Q ss_pred HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 119 VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 119 ~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
.++..|+ +++.++. . .|.+.+++.|+ +++.+++..++.||||. +|.++|+++++.++.|+
T Consensus 128 ~l~~~Gi-~v~~vd~--~----~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~ 192 (437)
T PRK05613 128 TLNRLGI-EVTFVEN--P----DDPESWQAAVQ---PNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDN 192 (437)
T ss_pred HHHhcCe-EEEEECC--C----CCHHHHHHhCC---ccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEEC
Confidence 3466788 7777741 1 26777887775 34545555689999996 79999999999999993
|
|
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.8e-07 Score=78.48 Aligned_cols=116 Identities=14% Similarity=0.152 Sum_probs=87.5
Q ss_pred CCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC
Q psy6266 74 REGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 74 ~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~ 153 (218)
+++++..+.|.|||+|...++.+.+...++..|+++.-..++....++..|. .+..+|.. . ...+|++.+++.|++.
T Consensus 82 ~~~~~~G~fTsGGTEaNl~al~~ar~~~~~~~vi~s~~~H~Sv~kaa~~lg~-~~~~V~~d-~-~g~id~~~L~~~i~~~ 158 (374)
T PLN03032 82 EKDEYWGYITTCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRM-EAVKVPTL-P-SGEIDYDDLERALAKN 158 (374)
T ss_pred CCccCCEEEeCchHHHHHHHHHHHHHhCCCcEEEeCCCceeHHHHHHHHcCC-CCeEeeeC-C-CCcCcHHHHHHHHHHc
Confidence 3444434689999999887766543233566888888888888888888888 88888873 3 4678999999999754
Q ss_pred CCCcEEEEcccCCCCcHH-----HHHHHhhcCe-----EEEeeCCceeecc
Q psy6266 154 PDNSVIILHACAHNPTAQ-----QVAHMVDKHH-----VYLLRSGRINMCG 194 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~-----~l~~l~~~~~-----i~ii~D~r~~y~~ 194 (218)
+.++++++.+..+|+||. +|+++|++++ +|+..| -++.+
T Consensus 159 ~~~~~lvv~tagtt~tG~idpi~eI~~i~~~~g~~~~~~~lHvD--aA~gg 207 (374)
T PLN03032 159 RDKPAILNVNIGTTVKGAVDDLDRILRILKELGYTEDRFYIHCD--GALFG 207 (374)
T ss_pred CCCCEEEEEEecCcCCccCCCHHHHHHHHHHhCCCCCCeeEEEE--ccchh
Confidence 334566666678999998 8999999985 699999 66554
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=8.2e-07 Score=78.58 Aligned_cols=177 Identities=15% Similarity=0.111 Sum_probs=98.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|..+.++......+.....-..++++.+++. ++ . +++ +.+
T Consensus 28 ~dg~~~lD~~~~~~~~~~G--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~------~--~~~--~~~ 94 (400)
T PTZ00125 28 VEGKKYYDFLSAYSAVNQG--HCHPKILAALINQAQKLTLTSRAFYNDVLGLAEKYITDL-FG------Y--DKV--LPM 94 (400)
T ss_pred CCCCEEEEcccCHhhccCC--cCCHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHhC-CC------C--CEE--EEe
Confidence 4577778886664322233 357788888776654311111111122223333333322 12 1 333 477
Q ss_pred ccChhHHHHHHHHHHHh--------cCCCeEEecCCCchhHHHHHHHhCCCcceeEec---cCCc---CccccHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRI--------LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRY---WNPE---KRAVDFTGMYED 149 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l--------~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~---~~~~---~~~~d~~~~~~~ 149 (218)
.+|++|...++.+.... ...+.|++.+-+|............ ....+.. +... ....|++.+++.
T Consensus 95 ~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~Hg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~ 173 (400)
T PTZ00125 95 NSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFSGRTIGACSAST-DPKCYNNFGPFVPGFELVDYNDVEALEKL 173 (400)
T ss_pred CCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcCCccHHHHhhcC-CcchhccCCCCCCCceEeCCCCHHHHHHH
Confidence 78888888877755321 1247788888776664422222211 1111110 0000 001278888888
Q ss_pred HhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.. ++..+++..+++||||. +|.++|++|++++|.| ++|.++.+.
T Consensus 174 l~~--~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~D--ev~~g~g~~ 227 (400)
T PTZ00125 174 LQD--PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVD--EIQTGLGRT 227 (400)
T ss_pred hCC--CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCcc
Confidence 752 33445555678999996 6889999999999999 999887543
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-06 Score=77.07 Aligned_cols=163 Identities=12% Similarity=-0.003 Sum_probs=101.3
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCC----cHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLG----LESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|.+.|+++--.|- | +...|.|++|.++.++.-+ ....+....| ..+|.+.+++++-. +..
T Consensus 44 ~~~~~~~~sn~yl---g-l~~~p~v~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~---------~~~-- 108 (406)
T PRK13393 44 PREVTVWCSNDYL---G-MGQHPAVLAAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGK---------EAA-- 108 (406)
T ss_pred CccEEEeeccccc---C-CCCCHHHHHHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCC---------CcE--
Confidence 3577888777663 2 3446778877766664311 1111112223 35666666665421 222
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCCcEE
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDNSVI 159 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~i 159 (218)
+.+++|+.|...++.++....+||.|+..+..++.....++..|+ +++.++. .|.+.+++.+... ++++.+
T Consensus 109 ~~~~SG~~An~~ai~~l~~~~~g~~I~~~~~~H~s~~~~~~~~g~-~~~~~~~-------~d~~~l~~~l~~~~~~~~~~ 180 (406)
T PRK13393 109 LLFTSGYVSNWAALSTLGSRLPGCVILSDELNHASMIEGIRHSRA-EKRIFRH-------NDPADLERKLSDLDPHRPKL 180 (406)
T ss_pred EEeCCcHHHHHHHHHHhhcCCCCCEEEEccchhHHHHHHHHHcCC-eEEEeCC-------CCHHHHHHHHHhccCCCCEE
Confidence 344555567777666553233688777777777777767777777 6655532 2555666656433 234556
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++..+++||||. +|.++|++++++++.| +++.
T Consensus 181 v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livD--ea~~ 217 (406)
T PRK13393 181 VAFESVYSMDGDIAPIAEICDVAEKHGAMTYLD--EVHA 217 (406)
T ss_pred EEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEE--CCcc
Confidence 666789999997 7999999999999999 8876
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-06 Score=77.47 Aligned_cols=174 Identities=13% Similarity=0.076 Sum_probs=102.5
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++. ..+... ......+|.+.+++.. + .+++
T Consensus 35 d~dG~~~lD~~~g~~~~~lG--h~~p~v~~A~~~~~~~--~~~~~~~~~~~~~~~la~~l~~~~-~--------~~~v-- 99 (406)
T PRK12381 35 DQQGKEYIDFAGGIAVNALG--HAHPALREALNEQASK--FWHTGNGYTNEPVLRLAKKLIDAT-F--------ADRV-- 99 (406)
T ss_pred eCCCCEEEEcCcCHhhccCC--CCCHHHHHHHHHHHhh--cccccCccCCHHHHHHHHHHHhhC-C--------CCeE--
Confidence 35677888886664333455 3367788777665532 111111 1111233444444322 1 1344
Q ss_pred EEeccChhHHHHHHHHHHHhc------CCCeEEecCCCchhHHHHHHHhCCCcceeEecc---CCc---CccccHHHHHH
Q psy6266 81 VQTLSGTGALRVGAEFLHRIL------NYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW---NPE---KRAVDFTGMYE 148 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~------~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~---~~~---~~~~d~~~~~~ 148 (218)
+.+.+|++|...++++.+... +.+.|+..+++|.........++. .+....-+ .+. ....|++.+++
T Consensus 100 ~~~~sGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 178 (406)
T PRK12381 100 FFCNSGAEANEAALKLARKYAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGG-QPKYSQDFAPLPPDIRHAAYNDLNSASA 178 (406)
T ss_pred EEcCCcHHHHHHHHHHHHHHHhhcCCCCCCeEEEECCCcCCcchhHHhhcC-CcccccCCCCCCCCeeEeCCCCHHHHHH
Confidence 588899999998888654331 357899999999887654333333 22111000 000 01126777777
Q ss_pred HHhcCCCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 149 DLVNAPDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 149 ~l~~~~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+. ++..+++. .|.||+|. +|.++|++|++++|.| |+|.++.+.
T Consensus 179 ~l~---~~~aavii-EPv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~tG~gr~ 232 (406)
T PRK12381 179 LID---DQTCAVIV-EPIQGEGGVIPADKAFLQGLRELCDRHNALLIFD--EVQTGVGRT 232 (406)
T ss_pred hcc---CCeeEEEE-eCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEc--chhhCCCCC
Confidence 774 23334443 58999874 7999999999999999 999988443
|
|
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=75.52 Aligned_cols=108 Identities=10% Similarity=0.067 Sum_probs=77.3
Q ss_pred CCCceEEEEeccChhHHHHHHHHHHHhcCC---CeEEecCCCchhHHH----HHHHhCCCcc----eeEeccCCcCcccc
Q psy6266 74 REGRAFGVQTLSGTGALRVGAEFLHRILNY---TTFYYSKPTWENHRL----VFLNAGFTEA----REYRYWNPEKRAVD 142 (218)
Q Consensus 74 ~~~~v~~~~t~G~~~al~~~~~~l~~l~~g---d~V~i~~P~y~~y~~----~~~~~g~~~~----~~~~~~~~~~~~~d 142 (218)
++++| +.|.|+++++.+++..+ +.++ +.|++.+..|++-.. ..+..|+ ++ +.++. .+...++
T Consensus 85 ~~~~v--~~~~~~t~~l~~~~~~~--~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~-~~~~~~~~~~~--~~~g~~~ 157 (406)
T TIGR01814 85 KEDEV--VVMNTLTINLHLLLASF--YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGL-TVEESMVQIEP--REEETLR 157 (406)
T ss_pred CCCcE--EEeCCchHHHHHHHHHh--cCCcCCccEEEecCCCCChHHHHHHHHHHhcCC-CcccceEEecc--CCCCccC
Confidence 45665 58899999999988765 4554 368888899987222 2345677 66 23332 2234568
Q ss_pred HHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 143 FTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 143 ~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
++.+++.++..++++.++.....+|.||. +|.++|++++++++.|+
T Consensus 158 ~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~ 208 (406)
T TIGR01814 158 LEDILDTIEKNGDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDL 208 (406)
T ss_pred HHHHHHHHHhcCCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEc
Confidence 88888877644456666666789999998 79999999999999995
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-06 Score=72.89 Aligned_cols=157 Identities=18% Similarity=0.116 Sum_probs=104.2
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCCCc---cCcC----CCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEeccChh
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSLNH---EYLP----VLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQTLSGTG 88 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~---~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t~G~~~ 88 (218)
|-|..|.-+.|+.|.++..+...+..... .|.. ..-+.+.|+.+++++.. ++ ++| +.|.+++.
T Consensus 2 Yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~-------~~~~~v--~~~~~~t~ 72 (371)
T PF00266_consen 2 YLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGA-------PPDEEV--VFTSNGTE 72 (371)
T ss_dssp EEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTS-------STTEEE--EEESSHHH
T ss_pred EeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCC-------cccccc--ccccccch
Confidence 44555556789999998877654310100 0111 11245777888877643 22 343 58889999
Q ss_pred HHHHHHHHHHH-hcCCCeEEecCCCchhHHH----HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 89 ALRVGAEFLHR-ILNYTTFYYSKPTWENHRL----VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 89 al~~~~~~l~~-l~~gd~V~i~~P~y~~y~~----~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
++..++..+.. +.+||+|++.+=.|++-.. +.+..|+ ++..++.. . ...+|.+.+.+.|. +++.++...
T Consensus 73 a~~~~~~~l~~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~-~v~~i~~~-~-~~~~~~~~~~~~l~---~~~~lv~~~ 146 (371)
T PF00266_consen 73 ALNAVASSLLNPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGA-EVRVIPAD-P-GGSLDLEDLEEALN---PDTRLVSIS 146 (371)
T ss_dssp HHHHHHHHHHHHGTTTCEEEEEESSHHHHHHHHHHHHHHTTE-EEEEEEEG-T-TSSCSHHHHHHHHH---TTESEEEEE
T ss_pred hhhhhhhccccccccccccccccccccccccccccccccchh-hhcccccc-c-cchhhhhhhhhhhc---cccceEEee
Confidence 99998887632 5789999999999888662 2234577 78778763 2 34679999999996 334444444
Q ss_pred cCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 164 CAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 164 ~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
-.+|-||. +|.++|++++++++.|+
T Consensus 147 ~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~ 176 (371)
T PF00266_consen 147 HVENSTGVRNPIEEIAKLAHEYGALLVVDA 176 (371)
T ss_dssp SBETTTTBBSSHHHHHHHHHHTTSEEEEE-
T ss_pred cccccccEEeeeceehhhhhccCCceeEec
Confidence 55678887 79999999999999994
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >KOG1549|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=8.7e-06 Score=71.95 Aligned_cols=161 Identities=11% Similarity=0.028 Sum_probs=115.9
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCC-Ccc-C--cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSL-NHE-Y--LPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~-~~~-Y--~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|.+.+.|-.|. ..+.++.|-+|+...... -+. +.. | -+-.+++.-|+.+|+++.. . +.+|
T Consensus 41 ~~~~vyld~~a------t~p~~~~Vldam~~~~~~~~~nPh~~~y~w~~~~~~E~aR~~VAklInA-d------~~dI-- 105 (428)
T KOG1549|consen 41 GTRPVYLDNQA------TGPMDPRVLDAMLPYLLEYLGNPHSRSYGWKAEDAVEAAREQVAKLINA-D------PSDI-- 105 (428)
T ss_pred CCccEEEecCc------CCCCCHHHHHHHHHHHHHhhcCCCccccchhhhHHHHHHHHHHHHHhCC-C------CCcE--
Confidence 34566666664 347789999998876644 111 111 2 2234488899999988865 2 2344
Q ss_pred EEeccChhHHHHHHHHHHHhcCCC----eEEecCCCchhHHH---HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYT----TFYYSKPTWENHRL---VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd----~V~i~~P~y~~y~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~ 153 (218)
+-|.|+|+++.++++... +.++| .|+...--+++... ..+..|+ +++.+|.- +..-.|.+.+++.|+
T Consensus 106 iFts~ATEs~Nlvl~~v~-~~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~-~Vt~lpv~--~~~~~d~~~~~~~i~-- 179 (428)
T KOG1549|consen 106 VFTSGATESNNLVLKGVA-RFFGDKTKKHIITLQTEHPCVLDSCRALQEEGL-EVTYLPVE--DSGLVDISKLREAIR-- 179 (428)
T ss_pred EEeCCchHHHHHHHHHhh-ccccccccceEEEecccCcchhHHHHHHHhcCe-EEEEeccC--ccccccHHHHHHhcC--
Confidence 599999999999988764 44678 89999888888664 3455688 89999883 345569999999996
Q ss_pred CCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 154 PDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
++++++.+..-+|=+|. +|.++|++++|+++.|.
T Consensus 180 -~~T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~Da 218 (428)
T KOG1549|consen 180 -SKTRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDA 218 (428)
T ss_pred -CCceEEEEEecccCccccccHHHHHHHhCcCCcEEEeeh
Confidence 45555555566777887 89999999999999993
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.6e-06 Score=76.31 Aligned_cols=124 Identities=19% Similarity=0.111 Sum_probs=89.4
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
.+++.+|+.++..+...+ +.|||+|++..=++..+. .+++..|+ +++.+.. +-...++++.+++.|++.++.+
T Consensus 59 ~ll~gsGt~amEAav~sl--~~pgdkVLv~~nG~FG~R~~~ia~~~g~-~v~~~~~--~wg~~v~p~~v~~~L~~~~~~~ 133 (383)
T COG0075 59 VLLSGSGTLAMEAAVASL--VEPGDKVLVVVNGKFGERFAEIAERYGA-EVVVLEV--EWGEAVDPEEVEEALDKDPDIK 133 (383)
T ss_pred EEEcCCcHHHHHHHHHhc--cCCCCeEEEEeCChHHHHHHHHHHHhCC-ceEEEeC--CCCCCCCHHHHHHHHhcCCCcc
Confidence 467778888888877655 679999999988877754 68899999 8888765 2234679999999998544444
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHH
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVT 212 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~ 212 (218)
.+.+. -+--+||. .|++++++|+.++|.| +.+.+--..++-+.|-++-+++
T Consensus 134 ~V~~v-H~ETSTGvlnpl~~I~~~~k~~g~l~iVD---aVsS~Gg~~~~vd~wgiDv~it 189 (383)
T COG0075 134 AVAVV-HNETSTGVLNPLKEIAKAAKEHGALLIVD---AVSSLGGEPLKVDEWGIDVAIT 189 (383)
T ss_pred EEEEE-eccCcccccCcHHHHHHHHHHcCCEEEEE---ecccCCCcccchhhcCccEEEe
Confidence 44433 12336676 8999999999999999 5555555566666665554444
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.9e-06 Score=73.89 Aligned_cols=159 Identities=10% Similarity=0.011 Sum_probs=89.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC------CCCcHHHHHHHHHHhcCCCCCCCcCCCc
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP------VLGLESFSSAATRMLLGGDASPPLREGR 77 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~~~~~~~~~~ 77 (218)
..|...||++-..| -| ....|.|.+|.++.++.. ....+.. ..-..+|++.++++. + . +
T Consensus 43 ~~g~~~ld~~s~~~---lg-l~~~p~v~~A~~~~l~~~-g~~~~~~~~~~~~~~~~~~l~~~la~~~-~------~--~- 107 (402)
T PRK07505 43 ADGHTFVNFVSCSY---LG-LDTHPAIIEGAVDALKRT-GSLHLSSSRTRVRSQILKDLEEALSELF-G------A--S- 107 (402)
T ss_pred cCCceEEEeecCCc---cC-CCCCHHHHHHHHHHHHHh-CCCCCCccchhhhhHHHHHHHHHHHHHh-C------C--C-
Confidence 45788889865432 23 255777888876655431 1111111 223456666666553 2 1 2
Q ss_pred eEEEEeccChhHHHHHHHHHHH-hcC-CC-eEEecCCCchh----HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHH
Q psy6266 78 AFGVQTLSGTGALRVGAEFLHR-ILN-YT-TFYYSKPTWEN----HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDL 150 (218)
Q Consensus 78 v~~~~t~G~~~al~~~~~~l~~-l~~-gd-~V~i~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l 150 (218)
. +.++++++|...++.++.. +.+ |+ .|++.+..|.. +....+ .+. +++.+|. .|++.+++.+
T Consensus 108 ~--~~~~sG~~a~~~ai~~~~~~~~~~~~~~vi~~~~~~H~s~~~~~~~~~-~~~-~v~~~~~-------~d~~~l~~~~ 176 (402)
T PRK07505 108 V--LTFTSCSAAHLGILPLLASGHLTGGVPPHMVFDKNAHASLNILKGICA-DET-EVETIDH-------NDLDALEDIC 176 (402)
T ss_pred E--EEECChHHHHHHHHHHHHhcccCCCCCCEEEEchhhhHhHHhhhhhhh-cCC-eEEEeCC-------CCHHHHHHHH
Confidence 2 2344455566555543321 112 33 36677755432 111111 234 4555543 2778888777
Q ss_pred hcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 151 VNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 151 ~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.. ++.+++.++|+||||. +|.++|+++++++|.| |+|.
T Consensus 177 ~~---~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~D--Ea~~ 219 (402)
T PRK07505 177 KT---NKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYID--DAHG 219 (402)
T ss_pred hc---CCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEE--Cccc
Confidence 53 2233444679999997 8999999999999999 8874
|
|
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=3e-06 Score=75.29 Aligned_cols=96 Identities=7% Similarity=0.035 Sum_probs=73.0
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 155 (218)
++.+.+|+.|+..++..+ +.+||+|++++..|++-...+ +..|. ++..++. .|.+.+++.|+ +
T Consensus 80 a~~~~SGmaAi~~~~~~l--l~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi-~v~~vd~-------~d~~~l~~~l~---~ 146 (395)
T PRK08114 80 CALYPCGAAAVANAILAF--VEQGDHVLMTGTAYEPTQDFCSKILSKLGV-TTTWFDP-------LIGADIAKLIQ---P 146 (395)
T ss_pred EEEEhHHHHHHHHHHHHH--cCCCCEEEEeCCCcHHHHHHHHHHHHhcCc-EEEEECC-------CCHHHHHHhcC---C
Confidence 468888999999888766 689999999988886655444 44576 6666532 25677887775 3
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhhcC--eEEEeeCC
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVDKH--HVYLLRSG 188 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~~~--~i~ii~D~ 188 (218)
+++++..-+|.||||. +|+++|+++ +++++.|+
T Consensus 147 ~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDn 186 (395)
T PRK08114 147 NTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDN 186 (395)
T ss_pred CceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEEC
Confidence 4566666799999997 789999997 49999993
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.2e-06 Score=73.75 Aligned_cols=137 Identities=13% Similarity=0.085 Sum_probs=99.1
Q ss_pred CcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeE
Q psy6266 52 GLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREY 131 (218)
Q Consensus 52 G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~ 131 (218)
+..++=+.+.+|+.. --+ +.++.....+|.|||++.-.++.+-+...+.-.+++++-+..+....++..|+ +++.+
T Consensus 130 ~s~~~E~~Vi~wla~-L~g--~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy~S~~aH~Sv~KAa~llgi-~~~~V 205 (470)
T PLN02263 130 HSRQFEVGVLDWFAR-LWE--IEKNEYWGYITNCGTEGNLHGILVGREVFPDGILYASRESHYSVFKAARMYRM-ECVKV 205 (470)
T ss_pred hHHHHHHHHHHHHHH-HhC--CCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEEEcCCccHHHHHHHHhcCC-cceEe
Confidence 344555555555522 111 22323335789999999887776544433445789999999999999999999 89999
Q ss_pred eccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeE-----EEeeCCceeeccCC
Q psy6266 132 RYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHV-----YLLRSGRINMCGLT 196 (218)
Q Consensus 132 ~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i-----~ii~D~r~~y~~l~ 196 (218)
|.. +.+.+|.+.++++|.+...+.++++-+.+.-+||. +|.++|+++++ |+-.| -+|.|+.
T Consensus 206 p~d--~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVD--AA~GG~~ 276 (470)
T PLN02263 206 DTL--VSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCD--GALFGLM 276 (470)
T ss_pred ccC--CCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEe--ccchhhH
Confidence 873 35689999999999764444566665667779998 89999999886 99999 7887753
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.1e-05 Score=72.60 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=84.1
Q ss_pred ceEEEEeccChhHHHHHHHHHHH-h-----cCC-----CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHH
Q psy6266 77 RAFGVQTLSGTGALRVGAEFLHR-I-----LNY-----TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTG 145 (218)
Q Consensus 77 ~v~~~~t~G~~~al~~~~~~l~~-l-----~~g-----d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 145 (218)
++...+|.|||+|..+++.+.+. . ..| ..|++++-..++....++..|+ +++.+|.. ++...+|.+.
T Consensus 101 ~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~-~v~~i~~d-~~~~~vd~~~ 178 (431)
T TIGR01788 101 EAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDV-ELREVPMD-PGRYVIDPEQ 178 (431)
T ss_pred CCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCc-eeEEEecC-CCceeeCHHH
Confidence 45556799999998887654321 1 112 3688888888888888888898 88888873 3334679999
Q ss_pred HHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcC------eEEEeeCCceeecc
Q psy6266 146 MYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKH------HVYLLRSGRINMCG 194 (218)
Q Consensus 146 ~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~------~i~ii~D~r~~y~~ 194 (218)
+++.|.+ .++++...-.+|.||. +|+++|+++ ++|+..| -+|.+
T Consensus 179 L~~~i~~---~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvD--aaq~g 233 (431)
T TIGR01788 179 VVEAVDE---NTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVD--AASGG 233 (431)
T ss_pred HHHHHhh---CCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEe--cccHH
Confidence 9999964 3455655678999998 899999999 9999999 78775
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-05 Score=71.77 Aligned_cols=183 Identities=13% Similarity=0.097 Sum_probs=102.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...+.|.+|..+.+++ ..+.+.+..+.+... ++++++.. ..+... .+++ .+.+
T Consensus 38 ~dG~~~lD~~~g~~~~~lG--h~~~~i~~a~~~~~~~--~~~~~~~~~~~~~~~-~la~~l~~-~~~~~~-~~~~-~f~~ 109 (425)
T PRK08088 38 VEGREYLDFAGGIAVLNTG--HLHPKVVAAVEAQLKK--LSHTCFQVLAYEPYL-ELCEKMNQ-KVPGDF-AKKT-LLVT 109 (425)
T ss_pred CCCCEEEEcCCchhhcCCC--CCCHHHHHHHHHHHhh--CCCccccccCCHHHH-HHHHHHHH-hCCCCC-CCEE-EEeC
Confidence 4577778887764333344 4477888887776643 223344444555554 56776644 221111 1344 2344
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEe--c-----------cCCcCccc----cHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYR--Y-----------WNPEKRAV----DFTGM 146 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~--~-----------~~~~~~~~----d~~~~ 146 (218)
. |++|...++.+...+.....|+..+|+|......+...+. ....+. + +..+..+. +++.+
T Consensus 110 s-Gsea~e~Alklar~~~~r~~iv~~~~~yHG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l 187 (425)
T PRK08088 110 T-GSEAVENAVKIARAATKRSGVIAFTGAYHGRTHYTLALTG-KVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASI 187 (425)
T ss_pred C-cHHHHHHHHHHHHHHhCCCeEEEECCccCCccHHHHHhhC-CCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHH
Confidence 4 4566555555443333445677779999887765555544 221100 0 00000011 14556
Q ss_pred HHHHhcC---CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 147 YEDLVNA---PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 147 ~~~l~~~---~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++.+.+. ..-..+++-+..+||+.. +|.++|++|++++|.| ++|.++.+.
T Consensus 188 ~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~D--ev~~g~g~~ 248 (425)
T PRK08088 188 ERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIAD--EVQTGAGRT 248 (425)
T ss_pred HHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCcC
Confidence 6666421 122345555667776443 7999999999999999 999987443
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=70.03 Aligned_cols=156 Identities=15% Similarity=0.077 Sum_probs=110.0
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcC----CCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADD----SLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGAL 90 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~----~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al 90 (218)
|-|..-..++.+.|.+++.....+. ...|.|.- ..-+++-|+++++.+.. ++++| +-|.|++++.
T Consensus 4 YlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS~H~~G~~A~~~ve~AR~~iA~llga-------~~~eI--iFTSG~TEsn 74 (386)
T COG1104 4 YLDNAATTPVDPEVLEAMLPYLTEVFGNPSSLHSFGREARKAVEEAREQIAKLLGA-------DPEEI--IFTSGATESN 74 (386)
T ss_pred cccccccCCCCHHHHHHHHHHHHhhcCCccchhHhHHHHHHHHHHHHHHHHHHhCC-------CCCeE--EEecCCcHHH
Confidence 4455556678899999988766541 11122211 12267788888887743 34554 5999999999
Q ss_pred HHHHHH--HHHhc--CCCeEEecCCCchhHHHHHHHh---CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 91 RVGAEF--LHRIL--NYTTFYYSKPTWENHRLVFLNA---GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 91 ~~~~~~--l~~l~--~gd~V~i~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.++... ...-+ .|..++++.-=.+.-...++.. |+ ++.++|.. ....+|.+.++++|+ +++.++-+.
T Consensus 75 NlaI~g~~~a~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~-~Vtyl~V~--~~G~v~~e~L~~al~---~~T~LVSim 148 (386)
T COG1104 75 NLAIKGAALAYRNAQKGKHIITSAIEHPAVLNTCRYLERQGF-EVTYLPVD--SNGLVDLEQLEEALR---PDTILVSIM 148 (386)
T ss_pred HHHHHhhHHhhhcccCCCeEEEcccccHHHHHHHHHHHhcCC-eEEEeCCC--CCCeEcHHHHHHhcC---CCceEEEEE
Confidence 887774 21111 4788988877777666655555 88 88888763 245669999999996 456666666
Q ss_pred cCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 164 CAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 164 ~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
.-||=||. +|.++|+++++++..|
T Consensus 149 ~aNnE~G~IQpI~ei~~i~k~~~i~fHvD 177 (386)
T COG1104 149 HANNETGTIQPIAEIGEICKERGILFHVD 177 (386)
T ss_pred ecccCeeecccHHHHHHHHHHcCCeEEEe
Confidence 78999998 7999999999999999
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.9e-06 Score=73.78 Aligned_cols=122 Identities=16% Similarity=0.205 Sum_probs=86.1
Q ss_pred ccCcCCCCc---HHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH
Q psy6266 45 HEYLPVLGL---ESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL 121 (218)
Q Consensus 45 ~~Y~~~~G~---~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~ 121 (218)
..|+-. |. ..|.+++++...+ +. ++.++.|+.|+..++.++ +.+||.|++++..|+.-...++
T Consensus 47 ~~Y~R~-gnPt~~~le~~la~Le~g---------~~--a~~~~SGmaAi~~~l~~l--l~~Gd~iv~~~~~Y~~t~~~~~ 112 (386)
T PF01053_consen 47 YIYSRY-GNPTVRALEQRLAALEGG---------ED--ALLFSSGMAAISAALLAL--LKPGDHIVASDDLYGGTYRLLE 112 (386)
T ss_dssp CSBTTT-C-HHHHHHHHHHHHHHT----------SE--EEEESSHHHHHHHHHHHH--S-TTBEEEEESSSSHHHHHHHH
T ss_pred cceecc-ccccHHHHHHHHHHhhcc---------cc--eeeccchHHHHHHHHHhh--cccCCceEecCCccCcchhhhh
Confidence 445543 44 4566666665533 22 468899999998888776 6799999999999998776665
Q ss_pred H----hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCe-EEEeeCCcee
Q psy6266 122 N----AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHH-VYLLRSGRIN 191 (218)
Q Consensus 122 ~----~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~-i~ii~D~r~~ 191 (218)
. .|. ++..+ +. .|.+.++++++ +++.+++.-+|.||+.. .++++|++++ +.++.| -.
T Consensus 113 ~~l~~~gv-~v~~~---d~----~d~~~l~~~l~---~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVD--nT 179 (386)
T PF01053_consen 113 ELLPRFGV-EVTFV---DP----TDLEALEAALR---PNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVD--NT 179 (386)
T ss_dssp HCHHHTTS-EEEEE---ST----TSHHHHHHHHC---TTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEE--CT
T ss_pred hhhcccCc-EEEEe---Cc----hhHHHHHhhcc---ccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEee--cc
Confidence 3 355 44444 22 37888988886 35666666799999986 7899999998 999999 55
Q ss_pred ec
Q psy6266 192 MC 193 (218)
Q Consensus 192 y~ 193 (218)
+.
T Consensus 180 ~a 181 (386)
T PF01053_consen 180 FA 181 (386)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-05 Score=71.58 Aligned_cols=174 Identities=13% Similarity=0.081 Sum_probs=96.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.-.+.-| ...|.|.+|..+.++. ..+ +....+.+. ...+++++.. .. ..+++ +.+
T Consensus 37 ~dG~~~iD~~~~~~~~~lG--h~~p~v~~a~~~~~~~--~~~-~~~~~~~~~-~~~l~~~l~~-~~----~~~~~--~~~ 103 (403)
T PRK05093 37 QQGKEYIDFAGGIAVTALG--HCHPALVKALKEQGEK--LWH-ISNVFTNEP-ALRLAKKLID-AT----FAERV--FFA 103 (403)
T ss_pred CCCCEEEEcCcCHHhccCC--CCCHHHHHHHHHHHHh--cCc-ccCccCCHH-HHHHHHHHHh-hC----CCCEE--EEe
Confidence 4578888987663223456 3677888887766543 111 222222233 2344555533 21 11343 477
Q ss_pred ccChhHHHHHHHHHHHhc-----C-CCeEEecCCCchhHH-HHHHHhCCCcceeEe-cc--CCcCc---cccHHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRIL-----N-YTTFYYSKPTWENHR-LVFLNAGFTEAREYR-YW--NPEKR---AVDFTGMYEDL 150 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-----~-gd~V~i~~P~y~~y~-~~~~~~g~~~~~~~~-~~--~~~~~---~~d~~~~~~~l 150 (218)
.+|++|...++.+..... + -+.|+..+-+|-... ..+... . .+...+ +. ..... -.|++.+++.+
T Consensus 104 ~sGseA~e~a~klar~~~~~~~~~~~~~ii~~~~~~HG~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 181 (403)
T PRK05093 104 NSGAEANEAAFKLARRYACDRHGPEKTEIIAFHNSFHGRTLFTVSVG-G-QPKYSDGFGPKPADITHVPFNDLAAVKAVI 181 (403)
T ss_pred CchHHHHHHHHHHHHHHHhhcCCCCCCeEEEEcCCcCCchhhhHhhc-C-ChhhhhcCCCCCCCcEEeCCCCHHHHHHHh
Confidence 788888887777543321 2 346777777665533 222221 1 111000 00 00000 11677787777
Q ss_pred hcCCCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 151 VNAPDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 151 ~~~~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
. ++..+++. .|.||+|. +|.++|++|++++|.| |+|.++.+.
T Consensus 182 ~---~~~aaiii-ep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~D--Ev~~g~g~~ 233 (403)
T PRK05093 182 D---DHTCAVVV-EPIQGEGGVIPATPEFLQGLRELCDQHNALLIFD--EVQTGMGRT 233 (403)
T ss_pred c---CCeEEEEE-ecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhhCCCCC
Confidence 4 33444444 38888864 7899999999999999 999998554
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.9e-05 Score=69.47 Aligned_cols=170 Identities=14% Similarity=0.130 Sum_probs=105.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| . .|.|++|..+.++. .. .| +..-..++++++++++.+ . ++.+ ++.+
T Consensus 26 ~dg~~~lD~~s~~~~~~lG--~-~p~v~~a~~~~~~~--~~-~~-~~~~~~~~~~~la~~l~~-~------~~~~-~~~~ 90 (375)
T PRK04260 26 TDGKKYLDFSSGIGVTNLG--F-HPQVQQALQKQAGL--IW-HS-PNLYLNSLQEEVAQKLIG-D------KDYL-AFFC 90 (375)
T ss_pred CCCCEEEECCCCcccccCC--C-CHHHHHHHHHHHHh--cC-cc-cCccCCHHHHHHHHHHhc-C------cCCE-EEEc
Confidence 4577788886653222334 2 45688887776643 11 12 223456788889987744 2 1222 3578
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH-HHHHHhCCCcce---------eEeccCCcCccccHHHHHHHHhcC
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR-LVFLNAGFTEAR---------EYRYWNPEKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~-~~~~~~g~~~~~---------~~~~~~~~~~~~d~~~~~~~l~~~ 153 (218)
.++++|...++++.....++++|++.+++|.... ......|. +.. .++.. .-.|++.+++.+.
T Consensus 91 ~SGseA~~~Al~~ar~~~~~~~vv~~~~~yHg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~dl~~l~~~l~-- 163 (375)
T PRK04260 91 NSGAEANEAAIKIARKATGKQEIITFQNSFHGRTFGSMSATGQ-DKIKDGFGDGVPHFSYA----IFNDLNSVKALVN-- 163 (375)
T ss_pred CccHHHHHHHHHHHHHhcCCCeEEEECCCcCcccHHHHhccCC-cccCCCCCCCCCCeEEe----CCCCHHHHHHhcC--
Confidence 8999999988886644445788999999887533 22222222 111 11110 0126777777663
Q ss_pred CCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 154 PDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++..+++.-.++|++|. ++.++|+++++++|.| ++|.++...
T Consensus 164 -~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~D--e~~~g~g~~ 214 (375)
T PRK04260 164 -KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVD--EVQTGMGRT 214 (375)
T ss_pred -CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--chhhCCCcc
Confidence 23344555567888876 7889999999999999 999887443
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.2e-06 Score=73.61 Aligned_cols=108 Identities=17% Similarity=0.184 Sum_probs=73.0
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH----HHHHHhCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR----LVFLNAGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~----~~~~~~g~~~~ 128 (218)
..+|-+.++++.-+ +. ++.+.+|+.|+.+++.++ +.|||+|+++.+.|++.. ..+...|+ ++
T Consensus 66 ~~~lE~~la~leg~---------~~--av~~sSG~aAi~~al~al--l~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi-~v 131 (384)
T PRK06434 66 VQAFEEKYAVLENA---------EH--ALSFSSGMGAITSAILSL--IKKGKRILSISDLYGQTFYFFNKVLKTLGI-HV 131 (384)
T ss_pred HHHHHHHHHHHhCC---------Cc--EEEeCCHHHHHHHHHHHH--hCCCCEEEEecCccchHHHHHHHHHHhcCc-EE
Confidence 45566666665432 11 358888999999988876 689999999987655544 55566788 78
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
+.++....+ .++ +. ++++.+++..+|.|||+. +|.++|+++++++ |
T Consensus 132 ~fvd~~~~~--~~~-------l~--~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~lvV--D 182 (384)
T PRK06434 132 DYIDTDRLN--SLD-------FD--PSNYDLIYAESITNPTLKVPDIKNVSSFCHENDVIV--D 182 (384)
T ss_pred EEECCCChh--hee-------ec--CCCeeEEEEEcCCCCCceeecHHHHHHHHHHcCeEE--E
Confidence 887552111 111 21 123455666789999987 8999999998543 8
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.3e-05 Score=70.40 Aligned_cols=163 Identities=10% Similarity=-0.023 Sum_probs=92.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CC-CCc--cCcCCCC----cHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DS-LNH--EYLPVLG----LESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~-~~~--~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.+|||+--.|-+-.-++++.+.+.+|+.+...+ +. +.+ ...-..| +.++|+.+++++.. +..
T Consensus 5 ~~~~~~s~~YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~---------~~~- 74 (370)
T PRK05937 5 LSIDFVTNDFLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGA---------PEA- 74 (370)
T ss_pred ceEEeECCCccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCC---------CeE-
Confidence 478998888866555555555555554443211 00 011 1111122 67888888887632 122
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC---CCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDN 156 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~ 156 (218)
.+.+.|. .+...+...+ ..+||.|++..=.+++-...++.... ..+.++ ..|++.+++.|+.. .++
T Consensus 75 l~~~sG~-~a~~~~~~~~--~~~~d~ii~d~~~H~sv~~~~~~~~~-~~~~~~-------~~d~~~l~~~l~~~~~~~~~ 143 (370)
T PRK05937 75 FIVPSGY-MANLGLCAHL--SSVTDYVLWDEQVHISVVYSLSVISG-WHQSFR-------HNDLDHLESLLESCRQRSFG 143 (370)
T ss_pred EEECChH-HHHHHHHHHh--CCCCCEEEEEhhhhHHHHHHHHHcCC-ceEEec-------CCCHHHHHHHHHhhhccCCC
Confidence 2344554 3332222222 24677666655554443344444333 233331 24778888877642 123
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.+++...++|+||. +|.++|++++++++.| +++.
T Consensus 144 ~~~v~v~~v~s~~G~i~pl~eI~~l~~~~~~~livD--ea~~ 183 (370)
T PRK05937 144 RIFIFVCSVYSFKGTLAPLEQIIALSKKYHAHLIVD--EAHA 183 (370)
T ss_pred cEEEEEecCCCCCCCccCHHHHHHHHHHcCCEEEEE--CCcc
Confidence 455555689999997 8999999999999999 7876
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.1e-05 Score=70.47 Aligned_cols=178 Identities=12% Similarity=0.114 Sum_probs=99.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++.......+.......+|.+.++++. + . +++ +.+
T Consensus 72 ~dG~~ylD~~sg~~~~~~G--h~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~-~------~--~~~--~f~ 138 (474)
T PLN02624 72 PEGKKYLDFLSAYSAVNQG--HCHPKIIKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMF-G------Y--DMV--LPM 138 (474)
T ss_pred CCCCEEEEcccchhcccCC--CCCHHHHHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhc-C------C--CeE--EEe
Confidence 4577777876664323344 3467788877665543111111233344455666655542 2 1 344 466
Q ss_pred ccChhHHHHHHHHHHHhc-------CCC-eEEecCCCchhHHHHHHHhCCCcce-eEecc--CCcCc---cccHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRIL-------NYT-TFYYSKPTWENHRLVFLNAGFTEAR-EYRYW--NPEKR---AVDFTGMYED 149 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-------~gd-~V~i~~P~y~~y~~~~~~~g~~~~~-~~~~~--~~~~~---~~d~~~~~~~ 149 (218)
.+|++|...++.+..... +++ .|+...-+|-........... ++. ..+++ .+... -.|++.+++.
T Consensus 139 ~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~yHG~t~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 217 (474)
T PLN02624 139 NTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCFHGRTLAAISMSC-DNEATRGFGPLLPGHLKVDFGDLDALEKI 217 (474)
T ss_pred CChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCcCCCCHHHhhcCC-CccccccCCCCCCCceEeCCCCHHHHHHH
Confidence 778888888777543321 133 466666555543222222222 111 11000 00000 1167888888
Q ss_pred HhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
++....+..+++..+++||+|. +|.++|++|++++|.| |+|.|+..
T Consensus 218 l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~D--Ev~tG~Gr 272 (474)
T PLN02624 218 FEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIAD--EIQTGLAR 272 (474)
T ss_pred HHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCcCc
Confidence 8643344455666789999996 7899999999999999 99998643
|
|
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.9e-05 Score=69.04 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=85.1
Q ss_pred CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCC-CchhHHHHHHH
Q psy6266 44 NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKP-TWENHRLVFLN 122 (218)
Q Consensus 44 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P-~y~~y~~~~~~ 122 (218)
.-.|..+....+|.+++++++-. + . ++-|..|+.|+.+++.+. +.|||+| +.- .|......+..
T Consensus 71 Dd~Yagd~s~~~LE~~vAe~lG~-e--------~--aV~v~sGTaAl~ll~~l~--v~pGd~V--p~n~~f~Tt~ahI~~ 135 (460)
T PRK13237 71 DEAYAGSRNFYHLEETVQEYYGF-K--------H--VVPTHQGRGAENLLSRIA--IKPGQYV--PGNMYFTTTRYHQEL 135 (460)
T ss_pred chhhcCCCcHHHHHHHHHHHHCC-C--------e--EEEeCCHHHHHHHHHHhC--CCCcCEE--CCccchHhhHHHHHh
Confidence 44699999999999999987632 1 2 357788899999865433 6789976 444 44444444677
Q ss_pred hCCCcceeEec--------cCCcCccccHHHHHHHHhcCC-CCcEEEEcccCCCCcH---------HHHHHHhhcCeEEE
Q psy6266 123 AGFTEAREYRY--------WNPEKRAVDFTGMYEDLVNAP-DNSVIILHACAHNPTA---------QQVAHMVDKHHVYL 184 (218)
Q Consensus 123 ~g~~~~~~~~~--------~~~~~~~~d~~~~~~~l~~~~-~~~~iil~~~p~NPTG---------~~l~~l~~~~~i~i 184 (218)
.|+ ..+.+.. ..+..+.+|++.+++.|++.. ++..++..-.++|..| .++.++|++|+|.+
T Consensus 136 ~Ga-~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~V 214 (460)
T PRK13237 136 NGG-IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKV 214 (460)
T ss_pred CCc-EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEE
Confidence 887 5554421 113346789999999997532 1111111112456553 28999999999999
Q ss_pred eeCC
Q psy6266 185 LRSG 188 (218)
Q Consensus 185 i~D~ 188 (218)
+.|+
T Consensus 215 i~Da 218 (460)
T PRK13237 215 FFDA 218 (460)
T ss_pred EEEC
Confidence 9998
|
|
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.2e-05 Score=66.82 Aligned_cols=178 Identities=13% Similarity=0.121 Sum_probs=95.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|......| ...|.|.+|.++.++..........+.-..+|.+.++++. + .++ ++.+
T Consensus 34 ~~g~~~lD~~s~~~~~~~G--h~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~--------~~~--~~~~ 100 (401)
T TIGR01885 34 VEGKRYLDFLSAYSAVNQG--HCHPKIVKALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLF-G--------YDK--VLPM 100 (401)
T ss_pred CCCCEEEEcccCHhhccCC--CCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHhhc-C--------CCE--EEEe
Confidence 4567778887663222233 3478888887766543111111111222344444444432 2 133 3578
Q ss_pred ccChhHHHHHHHHHHHh-------cCC-CeEEecCCCchhH-HHHHHHhCCCcceeEeccC---Cc---CccccHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRI-------LNY-TTFYYSKPTWENH-RLVFLNAGFTEAREYRYWN---PE---KRAVDFTGMYE 148 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l-------~~g-d~V~i~~P~y~~y-~~~~~~~g~~~~~~~~~~~---~~---~~~~d~~~~~~ 148 (218)
.+|++|...++.+.... .+| +.|+...-+|... ...+...+ .+.....+. .. -...|++.+++
T Consensus 101 ~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yhg~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~le~ 178 (401)
T TIGR01885 101 NTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFHGRTLGAISMST--DPDSRTNFGPYVPGFKKIPYNNLEALEE 178 (401)
T ss_pred CccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcCcccHHHHhCcC--CcccccccCCCCCCceEeCCCCHHHHHH
Confidence 88888888887764332 133 4555566665432 22223222 110000000 00 00126778887
Q ss_pred HHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 149 DLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 149 ~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+++..++..+++.-+.+|+||. +|.++|++|++++|.| |+|.++.+.
T Consensus 179 ~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~D--Ev~~g~g~~ 235 (401)
T TIGR01885 179 ALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIAD--EIQTGLGRT 235 (401)
T ss_pred HHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhhCCCcc
Confidence 77643333344444567877776 7899999999999999 999887544
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.7e-05 Score=67.65 Aligned_cols=175 Identities=11% Similarity=0.044 Sum_probs=95.9
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
|...|...||+.-|...+.-|. ..|.|.+|.++.++. ..+ ...... .+....+++++.. .. ..+++ .
T Consensus 30 ~d~dG~~ylD~~~g~~~~~lGh--~~p~v~~a~~~~~~~--~~~-~~~~~~-~~~~~~la~~L~~-~~----~~~~~--~ 96 (397)
T TIGR03246 30 WDQQGKEYIDFAGGIAVNALGH--AHPELVKALIEQADK--LWH-IGNGYT-NEPVLRLAKKLVD-AT----FADKV--F 96 (397)
T ss_pred EeCCCCEEEECCcCHhhccCCC--CCHHHHHHHHHHHHh--ccc-ccCccC-CHHHHHHHHHHHh-hC----CCCEE--E
Confidence 3457888899977643345663 478888887766542 111 111111 2233344444433 11 11343 5
Q ss_pred EeccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHH-HHHHHhCCCcceeEec--cCCcC---ccccHHHHHHH
Q psy6266 82 QTLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHR-LVFLNAGFTEAREYRY--WNPEK---RAVDFTGMYED 149 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~-~~~~~~g~~~~~~~~~--~~~~~---~~~d~~~~~~~ 149 (218)
.+.+|++|...++.+.+... +| +.|+..+=+|-... ..+...+. ....-++ ..... ...|++.+++.
T Consensus 97 f~~SGseA~e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 175 (397)
T TIGR03246 97 FCNSGAEANEAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFTVSVGGQ-PKYSQGFAPLPGGIKHAPYNDLAAAKAL 175 (397)
T ss_pred EeCCcHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCC-cccccCCCCCCCceEEeCCCCHHHHHHH
Confidence 78888998888887654331 23 45777776665543 23333332 1110000 00000 01277888877
Q ss_pred HhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+. ++..+++....+++.|. +|.++|++|++++|.| |+|.|+
T Consensus 176 l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~D--Ev~tG~ 225 (397)
T TIGR03246 176 IS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFD--EVQTGV 225 (397)
T ss_pred hc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--chhhcC
Confidence 74 23444444434444442 7999999999999999 999887
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.2e-06 Score=70.02 Aligned_cols=147 Identities=9% Similarity=0.035 Sum_probs=101.2
Q ss_pred CchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCe
Q psy6266 26 VLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTT 105 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~ 105 (218)
+-+.+.+|+.++... ...|....-..+|.+.+++++-. +.. +-+++|+.|-.++++++ +.|++.
T Consensus 7 ~~~~m~~a~~~a~~g---d~~Yg~D~~~~~l~~~i~~l~g~---------e~a--~f~~sGT~An~~al~~~--~~~~~~ 70 (290)
T PF01212_consen 7 PTPAMLEAMAAANVG---DDAYGEDPTTARLEERIAELFGK---------EAA--LFVPSGTMANQLALRAH--LRPGES 70 (290)
T ss_dssp S-HHEEHHHHHTTSB----CCTTSSHHHHHHHHHHHHHHTS---------SEE--EEESSHHHHHHHHHHHH--HHTTEE
T ss_pred CCHHHHHHHHccccC---CcccCCChhHHHHHHHHHHHcCC---------CEE--EEeCCCChHHHHHHHHH--HhcCCc
Confidence 456677776444422 23699888889999998876632 222 36678899998888877 469999
Q ss_pred EEecCCCchh---HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH--------
Q psy6266 106 FYYSKPTWEN---HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ-------- 171 (218)
Q Consensus 106 V~i~~P~y~~---y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~-------- 171 (218)
|+..++++.. ....-...|+ +++.++.. +...++++.+++.+... .+...++...+++|-.|-
T Consensus 71 vi~~~~aHi~~~E~ga~~~~~G~-~~~~l~~~--~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el 147 (290)
T PF01212_consen 71 VICADTAHIHFDETGAIEELSGA-KLIPLPSD--DDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEEL 147 (290)
T ss_dssp EEEETTEHHHHSSTTHHHHHTTC-EEEEEBEC--TGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHH
T ss_pred eeccccceeeeeccchhhHhcCc-EEEECCCc--ccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHH
Confidence 9999997553 2233366788 88888653 22578999999988762 133445555678887543
Q ss_pred -HHHHHhhcCeEEEeeCC-cee
Q psy6266 172 -QVAHMVDKHHVYLLRSG-RIN 191 (218)
Q Consensus 172 -~l~~l~~~~~i~ii~D~-r~~ 191 (218)
+|.++|++|++.+.-|| |..
T Consensus 148 ~ai~~~a~~~gl~lhmDGARl~ 169 (290)
T PF01212_consen 148 RAISELAREHGLPLHMDGARLA 169 (290)
T ss_dssp HHHHHHHHHHT-EEEEEETTHH
T ss_pred HHHHHHHHhCceEEEEehhhHH
Confidence 78999999999999998 544
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.3e-05 Score=75.55 Aligned_cols=103 Identities=7% Similarity=-0.026 Sum_probs=80.5
Q ss_pred EEeccCh----hHHHHHHHHHHHhcC-CC----eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHh
Q psy6266 81 VQTLSGT----GALRVGAEFLHRILN-YT----TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLV 151 (218)
Q Consensus 81 ~~t~G~~----~al~~~~~~l~~l~~-gd----~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~ 151 (218)
..+++++ .++.+++..+ +.+ || +|++|....++....+.+.|+ +++.+++. +...+|++.+++.+.
T Consensus 587 ~f~pnaga~ge~a~~~vi~~~--~~~~Gd~~r~~vli~~~aH~sn~a~a~~~G~-~vv~v~~d--~~G~vDle~L~~~i~ 661 (993)
T PLN02414 587 SLQPNAGAAGEYAGLMVIRAY--HLSRGDHHRNVCIIPVSAHGTNPASAAMCGM-KIVVVGTD--AKGNINIEELRKAAE 661 (993)
T ss_pred EEcCCCcHHHHHHHHHHHHHH--HhccCCCCCCEEEeCCCcCccCHHHHHHCCC-EEEEeccC--CCCCcCHHHHHHHHh
Confidence 3556555 5666666665 445 88 899999999998888888999 99999873 345789999999997
Q ss_pred cCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
..++++.+++...|+|-+|. +|.+++++++.+++.||
T Consensus 662 ~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDg 703 (993)
T PLN02414 662 AHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDG 703 (993)
T ss_pred ccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEe
Confidence 54334556666789999887 68899999999999996
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.6e-05 Score=68.63 Aligned_cols=130 Identities=12% Similarity=0.026 Sum_probs=87.3
Q ss_pred CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCC
Q psy6266 47 YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT 126 (218)
Q Consensus 47 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~ 126 (218)
.....|...=-|..+...|| .+ + ..++|.|+|.++.++++++ +.|||.|+++.=+.=+-...+.+.|+
T Consensus 61 L~~p~G~I~eAe~~aA~~fG-Ad-------~-t~flvnGsT~g~~a~i~a~--~~~gd~VLv~RN~HkSv~~alil~ga- 128 (417)
T PF01276_consen 61 LHDPEGIIKEAEELAARAFG-AD-------K-TFFLVNGSTSGNQAMIMAL--CRPGDKVLVDRNCHKSVYNALILSGA- 128 (417)
T ss_dssp TTTTBTHHHHHHHHHHHHHT-ES-------E-EEEESSHHHHHHHHHHHHH--TTTTCEEEEETT--HHHHHHHHHHTE-
T ss_pred ccCCccHHHHHHHHHHHhcC-CC-------e-EEEEecCchHHHHHHHHHh--cCCCCEEEEcCCcHHHHHHHHHHcCC-
Confidence 33456665555555666666 22 2 2469999999999998877 78999999999998887778889999
Q ss_pred cceeEeccCCcCc----cccH-----HHHHHHHhcCCCCcE---EEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCc
Q psy6266 127 EAREYRYWNPEKR----AVDF-----TGMYEDLVNAPDNSV---IILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGR 189 (218)
Q Consensus 127 ~~~~~~~~~~~~~----~~d~-----~~~~~~l~~~~~~~~---iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r 189 (218)
+|++++.. .+.. .++. +.++++|++.+.... +++. +| +--|. +|+++|.++++.|+.|
T Consensus 129 ~Pvyi~p~-~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt-~P-TY~Gv~~di~~I~~~~h~~~~~llvD-- 203 (417)
T PF01276_consen 129 IPVYIPPE-DNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLT-SP-TYYGVCYDIKEIAEICHKHGIPLLVD-- 203 (417)
T ss_dssp EEEEEEEE-E-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEE-SS--TTSEEE-HHHHHHHHCCTECEEEEE--
T ss_pred eEEEecCC-ccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEe-CC-CCCeEEECHHHHHHHhcccCCEEEEE--
Confidence 89887653 2222 2255 889999987643322 3332 22 22243 8999999999999999
Q ss_pred eeec
Q psy6266 190 INMC 193 (218)
Q Consensus 190 ~~y~ 193 (218)
|+..
T Consensus 204 EAhG 207 (417)
T PF01276_consen 204 EAHG 207 (417)
T ss_dssp -TT-
T ss_pred cccc
Confidence 5543
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=98.03 E-value=8.3e-05 Score=65.82 Aligned_cols=180 Identities=15% Similarity=0.076 Sum_probs=99.2
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
|-..|...||+.-|.....-| ...|.|.+|.++.++. ..+ +... ..-+-...+++++.. .. ..++| .
T Consensus 10 ~D~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~~-~~~~-~~~~~~~~la~~l~~-~~----~~~~v--~ 76 (382)
T PLN00144 10 YDVEGKEYLDMAAGIAVNALG--HGDPDWVKAVAEQAGT--LAH-VSNV-YHTIPQVELAKRLVA-SS----FADRV--F 76 (382)
T ss_pred EeCCCCEEEECCcCHHhccCC--CCCHHHHHHHHHHHHh--cCC-cccc-ccCHHHHHHHHHHHh-cC----CCCeE--E
Confidence 346788888987664333445 4467788776665543 111 1111 112233445555543 21 12444 4
Q ss_pred EeccChhHHHHHHHHHHHhcC-------------CCeEEecCCCchhHHHHHHHhCCCcceeEecc--CCcCc---cccH
Q psy6266 82 QTLSGTGALRVGAEFLHRILN-------------YTTFYYSKPTWENHRLVFLNAGFTEAREYRYW--NPEKR---AVDF 143 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~-------------gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~--~~~~~---~~d~ 143 (218)
-+.+|++|...++.+.+.... ..+|+...-+|-................-++. ..+.. -.|+
T Consensus 77 f~~sGseA~e~AlklAr~~~~~~~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~ 156 (382)
T PLN00144 77 FCNSGTEANEAAIKFARKYQRVRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNL 156 (382)
T ss_pred EeCCcHHHHHHHHHHHHHHHhccCCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCH
Confidence 778888888877775433210 14688888887765433333222011111110 00000 1167
Q ss_pred HHHHHHHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 144 TGMYEDLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 144 ~~~~~~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.+++.+.. .+...+++-+. +||.|. +|.++|++|++++|.| |+|.++-..
T Consensus 157 ~~l~~~~~~-~~~aavi~eP~-q~~gg~~~~~~~~~~~l~~l~~~~g~llI~D--Ev~tg~gr~ 216 (382)
T PLN00144 157 EAARKLIQK-GKTAAVFVEPV-QGEGGIYPATKEFLQGLRALCDEAGALLVFD--EVQCGLGRT 216 (382)
T ss_pred HHHHHhcCC-CCeEEEEEccc-cCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhhCCCcc
Confidence 777776642 12234555555 888554 7999999999999999 999987443
|
|
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00013 Score=64.74 Aligned_cols=119 Identities=13% Similarity=0.143 Sum_probs=82.6
Q ss_pred CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH----HhCCC
Q psy6266 51 LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL----NAGFT 126 (218)
Q Consensus 51 ~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~----~~g~~ 126 (218)
.-...|-++++++--+ +. ++.+++|+.|+..++.++ +.+||.|++++..|+.-...+. ..|.
T Consensus 63 PT~~~lE~~~a~LEg~---------~~--~~afsSGmaAI~~~~l~l--l~~GD~vl~~~~~YG~t~~~~~~~l~~~gi- 128 (396)
T COG0626 63 PTRDALEEALAELEGG---------ED--AFAFSSGMAAISTALLAL--LKAGDHVLLPDDLYGGTYRLFEKILQKFGV- 128 (396)
T ss_pred ccHHHHHHHHHHhhCC---------Cc--EEEecCcHHHHHHHHHHh--cCCCCEEEecCCccchHHHHHHHHHHhcCe-
Confidence 3345666666665433 11 468899999999977666 6789999999999988665543 3444
Q ss_pred cceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 127 EAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
++..+ +. .+.+...+++.+ +++.+++.=+|.|||-. .|+++|+++++.++.| ..+..
T Consensus 129 ~~~~~---d~----~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVD--NTfat 190 (396)
T COG0626 129 EVTFV---DP----GDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVD--NTFAT 190 (396)
T ss_pred EEEEE---CC----CChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEE--CCccc
Confidence 44444 22 134455555542 35666666799999997 7999999999999999 66554
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00029 Score=63.86 Aligned_cols=163 Identities=14% Similarity=0.110 Sum_probs=108.8
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH-hcC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR-ILN 102 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~-l~~ 102 (218)
+++++...++.......--......| +..++=+.+.+++.. --+ .. +......|.|||+|..+++.+.+. +.+
T Consensus 72 ~~~~~~a~~~~~~~~~~nl~d~~~~p--~a~~~E~~~v~~l~~-l~~--~~-~~~~G~~t~GgTean~lal~aar~~~~~ 145 (460)
T COG0076 72 TRVPPVAAELLVSALNKNLGDPDESP--AAAELEERVVNMLSD-LLG--AP-EEASGTFTSGGTEANLLALLAARERWRK 145 (460)
T ss_pred CCCHHHHHHHHHHHHhhcCCCcccCh--hHHHHHHHHHHHHHH-HhC--CC-CCCceEEEcChHHHHHHHHHHHHHHHHH
Confidence 45566666666555533011222333 555665656555522 111 22 333457999999998877765433 211
Q ss_pred --C---C------eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH
Q psy6266 103 --Y---T------TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ 171 (218)
Q Consensus 103 --g---d------~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~ 171 (218)
+ . +|++|.-...+.....+..|+ ....++.- +....+|.+.+++.+.+.+..-. ++-.-+.-|||.
T Consensus 146 ~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~-~~~~v~~~-~~~~~id~~~l~~~i~~~t~~g~-vV~~aGtT~~G~ 222 (460)
T COG0076 146 RALAESGKPGGKPNIVCSETAHFSFEKAARYLGL-GLRRVPTV-PTDYRIDVDALEEAIDENTIGGV-VVGTAGTTDTGS 222 (460)
T ss_pred HhhhcccccCCCCeEEecCcchhHHHHHHHHhCC-CceeEEec-cCccccCHHHHHHHHHhhccCce-EEEEecCCCCCc
Confidence 1 1 689999898888899999999 99999884 32567899999999976532222 333456779998
Q ss_pred -----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 172 -----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 172 -----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+|+++|++++||+..| -+|.|+..
T Consensus 223 iDdi~~ia~ia~~~~i~lHVD--AA~GG~~~ 251 (460)
T COG0076 223 IDDIEELADIAEEYGIWLHVD--AAFGGFLL 251 (460)
T ss_pred cCCHHHHHHHHHHcCCcEEEE--ccccceee
Confidence 8999999999999999 88887654
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=97.88 E-value=7.8e-05 Score=65.25 Aligned_cols=148 Identities=9% Similarity=-0.106 Sum_probs=85.9
Q ss_pred CccCchHHHHHHHHHhhcCCCCc--cCcCC-------CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc-ChhHHHH
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNH--EYLPV-------LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS-GTGALRV 92 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~--~Y~~~-------~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G-~~~al~~ 92 (218)
....|+.|++|+.+...+.+..+ .|..+ .=+.+.|+.+++++.. -.+++| +.|.| +|+++..
T Consensus 7 p~~~p~~V~~a~~~~~~~~~~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~------~~~~~v--vf~~gs~T~a~~~ 78 (355)
T cd00611 7 PAALPEEVLEQAQKELLDFNGLGMSVMEMSHRSKDFEAIVNEAESDLRELLNI------PDNYKV--LFLQGGATGQFAA 78 (355)
T ss_pred CCCCCHHHHHHHHHHHhhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCC------CCCceE--EEEcCCchHHHHH
Confidence 35789999999877552211111 12222 1145667777765532 123444 57777 9999999
Q ss_pred HHHHHHHhc---CCCeEEecCCCchhHH-HHHHHhCCCcceeEeccCCcCccc-c-HHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 93 GAEFLHRIL---NYTTFYYSKPTWENHR-LVFLNAGFTEAREYRYWNPEKRAV-D-FTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 93 ~~~~l~~l~---~gd~V~i~~P~y~~y~-~~~~~~g~~~~~~~~~~~~~~~~~-d-~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++..+ +. +||+|++ -.|.... .+.+..|+ +++.++.. . ...+ + .+.....+ .+++.++......
T Consensus 79 ~~~~l--~~~~~~~~~i~~--g~~~~~~~~~a~~~g~-~~~~~~~~-~-~g~~~~~~~~~~~~~---~~~~~lV~~~h~~ 148 (355)
T cd00611 79 VPLNL--LGDKGTADYVVT--GAWSAKAAKEAKRYGG-VVVIVAAK-E-EGKYTKIPDVETWDL---APDAAYVHYCSNE 148 (355)
T ss_pred HHHhc--CCCCCeEEEEEC--CHHHHHHHHHHHhcCC-CcEEEecc-c-ccCCCCCCCHhhcCC---CCCCCEEEEeCCc
Confidence 98876 44 5666544 2333322 25577788 78877652 1 1112 2 12222222 2344445556678
Q ss_pred CCcHHHHHHHhhcCeEEEeeCC
Q psy6266 167 NPTAQQVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 167 NPTG~~l~~l~~~~~i~ii~D~ 188 (218)
|.||..+.++++.++++++.|+
T Consensus 149 t~tG~~~~~i~~~~g~~~~VDa 170 (355)
T cd00611 149 TIHGVEFDEVPDTGGVPLVADM 170 (355)
T ss_pred ccccEEcceecccCCCeEEEEc
Confidence 8999877778888999999995
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00049 Score=62.18 Aligned_cols=183 Identities=15% Similarity=0.112 Sum_probs=96.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.+.. ..+ +.......+.+..+++.+.. .-. ...+++ .-+
T Consensus 38 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~ql~~--~~~-~~~~~~~~~~~~~la~~L~~-~~p--~~~~~v--~f~ 107 (443)
T PRK08360 38 IEGNEYIDFLSDAAVQNVG--HNNPRVVKAIKEQTDK--LIH-YTPIYGFPVEPLLLAEKLIE-IAP--GDNPKV--SFG 107 (443)
T ss_pred CCCCEEEEccccHhhcccC--CCCHHHHHHHHHHHHh--ccC-ccccccCcHHHHHHHHHHHH-hCC--CCCCEE--EEc
Confidence 5677888887764334455 4577788887665543 121 21111222333444555433 110 111344 578
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH-HHHHHhCCC-----------cceeEeccCCcC--cc--------c
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR-LVFLNAGFT-----------EAREYRYWNPEK--RA--------V 141 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~-~~~~~~g~~-----------~~~~~~~~~~~~--~~--------~ 141 (218)
.+|++|...++++-+....-..|+...-+|-... ......|.. .+..+|+-.... +. .
T Consensus 108 ~sGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (443)
T PRK08360 108 LSGSDANDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKME 187 (443)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHH
Confidence 8899999988886543322345555555554432 222222210 122222211000 00 1
Q ss_pred cHHHHHHHHhcC--CCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 142 DFTGMYEDLVNA--PDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 142 d~~~~~~~l~~~--~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+++.+++.+++. ..+...++...-+||||. ++.++|++|++++|.| |+|.++.+.
T Consensus 188 ~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~~g~gr~ 253 (443)
T PRK08360 188 CVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVD--EVQSGLGRT 253 (443)
T ss_pred HHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCcC
Confidence 234455555431 122333443345699986 7899999999999999 999987543
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00055 Score=60.95 Aligned_cols=173 Identities=11% Similarity=0.002 Sum_probs=98.8
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
...|...||+.-|...+.-| ...|.|.+|.++.++. ..+.+. ....++...+++++.. .. ..+++ +.
T Consensus 32 d~dG~~~lD~~sg~~~~~lG--h~~p~v~~a~~~q~~~--~~~~~~--~~~~~~~~~la~~l~~-~~----~~~~v--~f 98 (395)
T PRK03715 32 DHNGKRYLDFIQGWAVNCLG--HCNPGMVEALAAQAEK--LINPSP--AFYNEPMAKLAGLLTQ-HS----CFDKV--FF 98 (395)
T ss_pred ECCCCEEEECCcChhhccCC--CCCHHHHHHHHHHHHh--cccccc--cccCHHHHHHHHHHhh-cc----CCCEE--EE
Confidence 45688888988764444455 3357788776665532 222221 1234566777887754 21 12444 58
Q ss_pred eccChhHHHHHHHHHHHh----cCC-CeEEecCCCchhHHH-HHHHhCCCcceeEeccC-CcCc----cccHHHHHHHHh
Q psy6266 83 TLSGTGALRVGAEFLHRI----LNY-TTFYYSKPTWENHRL-VFLNAGFTEAREYRYWN-PEKR----AVDFTGMYEDLV 151 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l----~~g-d~V~i~~P~y~~y~~-~~~~~g~~~~~~~~~~~-~~~~----~~d~~~~~~~l~ 151 (218)
+.+|++|...++.+.... .+| +.|+..+.+|..... .+...|. ......++. .... -.|++.+++.+.
T Consensus 99 ~~SGseA~e~Aik~ar~~~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~-~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 177 (395)
T PRK03715 99 ANSGAEANEGAIKLARKWGRKHKNGAYEIITFDHSFHGRTLATMSASGK-PGWDTIFAPQVPGFPKAELNDIASVEKLIT 177 (395)
T ss_pred eCCcHHHHHHHHHHHHHHhhccCCCCcEEEEECCCcCCChHHHHhhcCC-cccccCCCCCCCCceeeCCchHHHHHHHcC
Confidence 899999988888766432 123 578888888876543 2222222 111111100 0001 136677777664
Q ss_pred cCCCCcEEEEcccCCCCc--------HH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 152 NAPDNSVIILHACAHNPT--------AQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPT--------G~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+ +..+++.- |-+.. +. ++.++|++|++++|.| |++.|+
T Consensus 178 ~---~~aavi~E-pv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~tG~ 225 (395)
T PRK03715 178 D---KTVAVMLE-PVQGEGGVIPATREFMQQLRALTKQHGLLLIVD--EVQTGC 225 (395)
T ss_pred C---CceEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCC
Confidence 2 23333332 33322 22 7899999999999999 999985
|
|
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00027 Score=65.04 Aligned_cols=124 Identities=17% Similarity=0.110 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCc--eEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH---------H
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGR--AFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF---------L 121 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~--v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~---------~ 121 (218)
++.|...-+..+|+ -. ..+ +. ++-.+|+.|...++.++ +.|||+|+..+..++.|.... .
T Consensus 195 iE~la~era~~lF~-~~-----~~~~gaN-VQp~SGs~AN~aV~~AL--l~PGD~IL~ldl~~GGHlshg~~~~~g~~vs 265 (586)
T PLN02271 195 IERLCCERALAAFG-LD-----SEKWGVN-VQPYSCTSANFAVYTGL--LLPGDRIMGLDSPSGGHMSHGYYTPGGKKVS 265 (586)
T ss_pred HHHHHHHHHHHHhC-Cc-----ccccccc-eeeccHHHHHHHHHHHh--cCCCCEEEEecCCCCCchhcccccccccccc
Confidence 34445555666676 22 211 22 46678888888888887 789999999999999887532 2
Q ss_pred HhCCCcceeEecc-CCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH---HHHHHhhcCeEEEeeCC
Q psy6266 122 NAGFTEAREYRYW-NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ---QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 122 ~~g~~~~~~~~~~-~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~---~l~~l~~~~~i~ii~D~ 188 (218)
..|. ....++|. +.+...+|++.+++.... .++++++...-.||.-. .+.++|++++++++.|.
T Consensus 266 ~sG~-~~~~vpY~~d~~~g~IDyd~lek~a~~--~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~ 333 (586)
T PLN02271 266 GASI-FFESLPYKVNPQTGYIDYDKLEEKALD--FRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDM 333 (586)
T ss_pred cccc-eEEEEEcccccccCccCHHHHHHHhhh--cCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEEC
Confidence 2233 23333432 234567899999885443 44555655444666433 78899999999999994
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00057 Score=61.13 Aligned_cols=178 Identities=13% Similarity=0.054 Sum_probs=98.3
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++. ..+ +.+.... +....+++++.. .. + . .+++ .-
T Consensus 36 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~~-~~~~~~~-~~~~~la~~L~~-~~-~-~-~~~v--~f 103 (408)
T PRK04612 36 DDQGREYLDLAAGIAVCGLG--HNDPDLVAALTEQAGK--LWH-TSNVFYS-APPLKLAEELVT-AS-R-F-AEKV--FL 103 (408)
T ss_pred ECCCCEEEEcCccHhhccCC--CCCHHHHHHHHHHHHh--ccc-cccccCC-HHHHHHHHHHHh-hC-C-C-CCEE--EE
Confidence 35688888887664333445 4577777776665533 222 2221122 223445566543 21 1 1 1444 57
Q ss_pred eccChhHHHHHHHHHHHhc--CC----C-eEEecCCCchhHHHHHHHhCCCcceeEecc---CCcC---ccccHHHHHHH
Q psy6266 83 TLSGTGALRVGAEFLHRIL--NY----T-TFYYSKPTWENHRLVFLNAGFTEAREYRYW---NPEK---RAVDFTGMYED 149 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~--~g----d-~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~---~~~~---~~~d~~~~~~~ 149 (218)
+.+|++|...++++.+... .| + +|+...-+|-........... .+....-+ .... .-.|.+.+++.
T Consensus 104 ~~sGseA~e~AlklAr~~~~~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 182 (408)
T PRK04612 104 CNSGTEANEAAIKLVRKWASSQGRPADKRVIVTFRGSFHGRTLAAVTATA-QPKYQEGYEPLPGGFRYVDFNDVEALEAA 182 (408)
T ss_pred cCchHHHHHHHHHHHHHHHHhhCCCCCCcEEEEECCCcCCccHHHHHhcC-CcccccCCCCCCCCceEcCCCCHHHHHHh
Confidence 8888898888877654331 22 3 588888887765432222222 12110000 0100 01267777777
Q ss_pred HhcCCCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.. ..+..+...|.+++|. +|.++|++|++++|.| |+|.++-..
T Consensus 183 ~~~---~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~tg~gr~ 236 (408)
T PRK04612 183 MAG---GDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLD--EIQCGMGRT 236 (408)
T ss_pred hCC---CCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCcC
Confidence 742 2232333456776664 7999999999999999 999987543
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00061 Score=61.54 Aligned_cols=183 Identities=12% Similarity=-0.002 Sum_probs=95.7
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| ...|.|.+|.++.+++ .. .+....+..+.+..+++++.. .... ...+++ .-
T Consensus 52 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~-~~~~~~~~~~~~~~la~~l~~-~~p~-~~~~~v--~f 122 (443)
T PRK06058 52 DVDGNRLIDLGSGIAVTSVG--NSAPRVVEAVREQVAR--FT-HTCFMVTPYEGYVAVAEQLNR-LTPG-DHEKRS--AL 122 (443)
T ss_pred eCCCCEEEEcCcchhhhccC--CCCHHHHHHHHHHHHh--cc-CccccccCCHHHHHHHHHHHH-hCCC-CCCCEE--EE
Confidence 34677778887664333455 4577888887766643 22 232223334555566666643 2110 111344 35
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh-CC------------CcceeEeccCC--cC--cccc---
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA-GF------------TEAREYRYWNP--EK--RAVD--- 142 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~-g~------------~~~~~~~~~~~--~~--~~~d--- 142 (218)
+.+|++|...++++.+.....++|+..+++|..+....... +. ..+...|+... +. ...+
T Consensus 123 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (443)
T PRK06058 123 FNSGAEAVENAVKIARSYTGRQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEE 202 (443)
T ss_pred eCCcHHHHHHHHHHHHHhhCCCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHH
Confidence 56668988888775443434578999999998876332221 11 00111111000 00 0000
Q ss_pred -HHHHHHHHhcC--CCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 143 -FTGMYEDLVNA--PDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 143 -~~~~~~~l~~~--~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
.+...+.+++. ..+...++ .-|-+.+|- +|.++|++|++.+|.| |++.|+..
T Consensus 203 ~~~~~~~~l~~~~~~~~iAavi-~EPi~g~gG~~~p~~~yl~~lr~lc~~~gillI~D--EV~tGfgR 267 (443)
T PRK06058 203 AAARAITVIEKQVGADNLAAVI-IEPIQGEGGFIVPAEGFLPALLEWCRENGVVFIAD--EVQTGFAR 267 (443)
T ss_pred HHHHHHHHHHHhhCCCceEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCc
Confidence 01112222221 12222233 345544432 7999999999999999 99999743
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00044 Score=61.97 Aligned_cols=97 Identities=15% Similarity=0.125 Sum_probs=63.3
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcce---------eEeccCCcCccccHHHHHHHHhc
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAR---------EYRYWNPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~---------~~~~~~~~~~~~d~~~~~~~l~~ 152 (218)
.+.+|+.|+..++.++ +.|||+|++++..+.++. ..|+ ++. .+.. +.....+|++.+++.+..
T Consensus 95 ~~~SG~~A~~~~l~al--~~~GD~Vl~~~~~~~~~~----~~g~-~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~ 166 (416)
T PRK13034 95 QPHSGSQANGAVYLAL--LKPGDTILGMSLSHGGHL----THGA-KVSLSGKWYNAVQYGV-DRLTGLIDYDEVEELAKE 166 (416)
T ss_pred ecCCcHHHHHHHHHHh--cCCCCEEEEcCccceeee----ecCC-cceeccceeeeEEccc-ccccCCcCHHHHHHHHhh
Confidence 4578899999888877 689999999999887631 1233 331 2221 122345788888887754
Q ss_pred CCCCcEEEEcccCCCCcHH---HHHHHhhcCeEEEeeCC
Q psy6266 153 APDNSVIILHACAHNPTAQ---QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~---~l~~l~~~~~i~ii~D~ 188 (218)
. ++.+++...+.++.-. .|.++|++|+++++.|+
T Consensus 167 ~--~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~ 203 (416)
T PRK13034 167 H--KPKLIIAGFSAYPRELDFARFREIADEVGALLMVDM 203 (416)
T ss_pred c--CCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeC
Confidence 2 2344443333333221 78899999999999994
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.001 Score=61.54 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=95.3
Q ss_pred cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-----ceEEEEeccChhHHHHHHHHHHH--h-------cCCCeEEecCC
Q psy6266 46 EYLPVLGLESFSSAATRMLLGGDASPPLREG-----RAFGVQTLSGTGALRVGAEFLHR--I-------LNYTTFYYSKP 111 (218)
Q Consensus 46 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-----~v~~~~t~G~~~al~~~~~~l~~--l-------~~gd~V~i~~P 111 (218)
.|..+.+.-++=+.+.+|+.+ .-+ ++++ .-..++|.|+++|...++.+-+. + .|.=.|++++-
T Consensus 161 ~~~~sPa~t~lE~~vi~wl~~-l~g--lp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~ 237 (539)
T PLN02590 161 TWLTSPAATELEIIVLDWLAK-LLQ--LPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQ 237 (539)
T ss_pred CcccCchhHHHHHHHHHHHHH-HhC--CCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCC
Confidence 344455666777777777633 211 2111 12346889999887665543221 1 01125667787
Q ss_pred CchhHHHHHHHhCCC--cceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH-----HHHHHhhcCe
Q psy6266 112 TWENHRLVFLNAGFT--EAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ-----QVAHMVDKHH 181 (218)
Q Consensus 112 ~y~~y~~~~~~~g~~--~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~-----~l~~l~~~~~ 181 (218)
+..+....+..+|+- +++.+|....+.+.+|.+.++++|++. ...+++++-....=.||. +|+++|++|+
T Consensus 238 aH~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g 317 (539)
T PLN02590 238 THSSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYG 317 (539)
T ss_pred chHHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhC
Confidence 877888888888871 367777632234678999999999753 123455555566667887 8999999999
Q ss_pred EEEeeCCceeeccCC
Q psy6266 182 VYLLRSGRINMCGLT 196 (218)
Q Consensus 182 i~ii~D~r~~y~~l~ 196 (218)
+|+..| -+|.|..
T Consensus 318 ~WlHVD--aA~GG~a 330 (539)
T PLN02590 318 IWLHVD--AAYAGNA 330 (539)
T ss_pred CeEEEe--cchhhhh
Confidence 999999 8988854
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00043 Score=66.15 Aligned_cols=126 Identities=8% Similarity=0.012 Sum_probs=87.3
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcce
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAR 129 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~ 129 (218)
..|...=-|..+..+|| .+ + ..++|.|+|.++.++++++ +.+||.|+++.=+.=+-...+.+.|+ +|+
T Consensus 203 p~G~I~eAq~~aA~~fg-A~-------~-t~FlvNGST~gn~a~i~a~--~~~gd~Vlv~RN~HKSv~~al~L~ga-~Pv 270 (755)
T PRK15029 203 HTGAFGESEKYAARVFG-AD-------R-SWSVVVGTSGSNRTIMQAC--MTDNDVVVVDRNCHKSIEQGLILTGA-KPV 270 (755)
T ss_pred CCcHHHHHHHHHHHHhC-CC-------c-EEEEeCChhHHHHHHHHHh--cCCCCEEEeecccHHHHHHHHHHcCC-eEE
Confidence 45655555556666666 22 2 2469999999999888776 68999999999998887788899999 888
Q ss_pred eEeccCCcCccc----c-----HHHHHHHHhcCCCCc--------EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 130 EYRYWNPEKRAV----D-----FTGMYEDLVNAPDNS--------VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 130 ~~~~~~~~~~~~----d-----~~~~~~~l~~~~~~~--------~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
.++-.. +..++ + .+.++++|++.+..+ .+++ .+| +--|. +|+++|.++++.|+.|
T Consensus 271 yl~P~~-~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvl-t~P-TY~Gv~~di~~I~~~~h~~~~~llvD 347 (755)
T PRK15029 271 YMVPSR-NRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVV-TNC-TYDGVCYNAKEAQDLLEKTSDRLHFD 347 (755)
T ss_pred Eecccc-cccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEE-ECC-CCcceeeCHHHHHHHHHhcCCeEEEE
Confidence 874311 12222 3 778888887643222 3333 222 23354 7999999999999999
Q ss_pred Cceee
Q psy6266 188 GRINM 192 (218)
Q Consensus 188 ~r~~y 192 (218)
|+.
T Consensus 348 --EAh 350 (755)
T PRK15029 348 --EAW 350 (755)
T ss_pred --Ccc
Confidence 554
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0013 Score=59.09 Aligned_cols=182 Identities=8% Similarity=0.043 Sum_probs=94.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.+++ .....+. .. ..+....+++.+.. ... ....+++ .-+
T Consensus 37 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~-~~~~~~~-~~-~~~~~~~la~~l~~-~~p-~~~~~~~--~f~ 107 (421)
T PRK09792 37 VEGNEYIDFAAGIAVLNTG--HRHPDLVAAVEQQLQQ-FTHTAYQ-IV-PYESYVTLAEKINA-LAP-VSGQAKT--AFF 107 (421)
T ss_pred CCCCEEEEccCchhhhcCC--CCCHHHHHHHHHHHHh-ccCcccC-cc-CCHHHHHHHHHHHH-hCC-CCCCceE--EEe
Confidence 4567777776553323345 4467777776665543 1111111 11 12223334444432 110 0011344 355
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH-HHHhCCC------------cceeEeccCCcCccc----cHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-FLNAGFT------------EAREYRYWNPEKRAV----DFTGM 146 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-~~~~g~~------------~~~~~~~~~~~~~~~----d~~~~ 146 (218)
.+|++|...++.+.+....-.+|+...-+|-..... +...+.. .+..+|+... ..++ +++.+
T Consensus 108 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~-~~~~~~~~~~~~l 186 (421)
T PRK09792 108 TTGAEAVENAVKIARAHTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSD-LHGISTQDSLDAI 186 (421)
T ss_pred CChHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcc-cccccHHHHHHHH
Confidence 688899888887654332235677778777665322 2211210 0111222110 0111 24566
Q ss_pred HHHHhcC--CCC-cEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 147 YEDLVNA--PDN-SVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 147 ~~~l~~~--~~~-~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++.+++. ..+ ..+++-+ -++|+|. +|.++|++|++++|.| |++.++.+.
T Consensus 187 ~~~~~~~~~~~~iaavi~EP-vq~~~G~~~~~~~~l~~l~~lc~~~g~llI~D--Ev~tg~gr~ 247 (421)
T PRK09792 187 ERLFKSDIEAKQVAAIIFEP-VQGEGGFNVAPKELVAAIRRLCDEHGIVMIAD--EVQSGFART 247 (421)
T ss_pred HHHHHhccCCCceEEEEEcc-ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCCC
Confidence 6666531 122 3444444 4888885 7999999999999999 999998554
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00024 Score=69.63 Aligned_cols=130 Identities=11% Similarity=0.081 Sum_probs=85.9
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH--hcCCC----eEEecCCCchhHHHHHHHh
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR--ILNYT----TFYYSKPTWENHRLVFLNA 123 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~--l~~gd----~V~i~~P~y~~y~~~~~~~ 123 (218)
++|..++-..+.+++.. -.+ . +.+ .++..|+++|-..++.+++. ..+|| .|++++-.+++....+...
T Consensus 537 ~qG~l~~i~e~q~~l~e-ltG--~--d~~-sl~~~~ga~ge~agL~a~r~~~~~~G~~~r~~vlis~~aH~snp~sa~~~ 610 (954)
T PRK05367 537 AAGYRELIDQLEAWLAE-ITG--Y--DAV-SLQPNAGAQGEYAGLLAIRAYHESRGEGHRDVCLIPSSAHGTNPASAVMA 610 (954)
T ss_pred HHHHHHHHHHHHHHHHH-HHC--C--CCE-EECccHHHHHHHHHHHHHHHHhhccCCCCCCEEEEEchhhhhhHHHHHHC
Confidence 35566666656565533 221 1 233 45666776666554444432 24566 5999999998777888999
Q ss_pred CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 124 GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 124 g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
|+ +++.++.. . ...+|++.+++.++....+..+++..+|++-.+. +|.+++++++++++.||
T Consensus 611 G~-~vv~v~~d-~-~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDg 677 (954)
T PRK05367 611 GM-KVVVVACD-E-NGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDG 677 (954)
T ss_pred CC-EEEEECCC-C-CCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEEC
Confidence 99 99999873 2 3578999999988753233444444456555332 78899999999999995
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0011 Score=59.51 Aligned_cols=177 Identities=11% Similarity=0.105 Sum_probs=93.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCc---cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNH---EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~---~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+ .+.++....+|-+.+++..-+ -..+++
T Consensus 37 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~--l~~~~~~~~~~~~~~~la~~l~~~~p~------~~~~~v-- 104 (425)
T PRK07495 37 KEGRRYIDFAAGIAVVNTG--HRHPRVIAAVKAQLDR--FTHTCHQVVPYENYVRLAERLNALVPG------DFAKKT-- 104 (425)
T ss_pred CCCCEEEEccccHHhhccC--CCCHHHHHHHHHHHhh--ccCcccCccCCHHHHHHHHHHHHhCCC------CCCCEE--
Confidence 4577777876664333345 4567788877665543 121 123333333444444333211 011344
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh-CCC------------cceeEeccCCcCcccc----H
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA-GFT------------EAREYRYWNPEKRAVD----F 143 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~-g~~------------~~~~~~~~~~~~~~~d----~ 143 (218)
.-+.+|++|...++.+.+......+|+...-+|-........+ |.. .+..+|+. ....+.+ +
T Consensus 105 ~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~ 183 (425)
T PRK07495 105 IFVTTGAEAVENAVKIARAATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFP-VELHGVSVEQSL 183 (425)
T ss_pred EECCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCC-cccccccHHHHH
Confidence 4778889998888876543333457777777776653222111 110 11122221 1111121 3
Q ss_pred HHHHHHHhcC---CCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 144 TGMYEDLVNA---PDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 144 ~~~~~~l~~~---~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+.+++.+.+. .+-..+++-+..+| +|. +|.++|++|++++|.| |+|.++-
T Consensus 184 ~~l~~~~~~~~~~~~iaavi~EPv~g~-~G~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~tG~g 245 (425)
T PRK07495 184 AALDKLFKADVDPQRVAAIIIEPVQGE-GGFYPAPAAFMKALRELCDQHGILLIAD--EVQTGFA 245 (425)
T ss_pred HHHHHHHHhccCCCceEEEEECCccCC-CCCccCCHHHHHHHHHHHHHcCCEEEEe--chhhcCC
Confidence 3445555421 12234555566666 552 7999999999999999 9998873
|
|
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0023 Score=58.59 Aligned_cols=143 Identities=11% Similarity=0.059 Sum_probs=91.3
Q ss_pred CcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-----ceEEEEeccChhHHHHHHHHHHH--hc-------CCCeEEecCCC
Q psy6266 47 YLPVLGLESFSSAATRMLLGGDASPPLREG-----RAFGVQTLSGTGALRVGAEFLHR--IL-------NYTTFYYSKPT 112 (218)
Q Consensus 47 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-----~v~~~~t~G~~~al~~~~~~l~~--l~-------~gd~V~i~~P~ 112 (218)
|..+.+.-++=+.+.+|+.+ .-+ ++++ .-..++|.|||++...++.+-+. +. +.=.|++++-+
T Consensus 114 ~~~sp~~~~lE~~vi~wl~~-l~g--~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~a 190 (490)
T PLN02880 114 WITSPAATELEMIVLDWLAK-LLN--LPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQT 190 (490)
T ss_pred cccCcccHHHHHHHHHHHHH-HhC--CCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCc
Confidence 44445555666666666532 111 1111 01246889999987665543221 10 11256677777
Q ss_pred chhHHHHHHHhCCCc---ceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH-----HHHHHhhcCe
Q psy6266 113 WENHRLVFLNAGFTE---AREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ-----QVAHMVDKHH 181 (218)
Q Consensus 113 y~~y~~~~~~~g~~~---~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~-----~l~~l~~~~~ 181 (218)
..+....+...|+ . ++.+|....+...+|.+.++++|++. ....++++-....-+||. +|+++|++|+
T Consensus 191 H~Sv~Kaa~~lGl-g~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~ 269 (490)
T PLN02880 191 HSALQKACQIAGI-HPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNG 269 (490)
T ss_pred hHHHHHHHHHcCC-CHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcC
Confidence 7777778888887 4 56777632234578999999998653 122455555566678887 8999999999
Q ss_pred EEEeeCCceeeccC
Q psy6266 182 VYLLRSGRINMCGL 195 (218)
Q Consensus 182 i~ii~D~r~~y~~l 195 (218)
+|+..| -+|.+.
T Consensus 270 iwlHVD--aA~gg~ 281 (490)
T PLN02880 270 MWFHVD--AAYAGS 281 (490)
T ss_pred CEEEEe--hhhHHH
Confidence 999999 788775
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0027 Score=57.31 Aligned_cols=186 Identities=12% Similarity=0.032 Sum_probs=93.7
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCc-cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNH-EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~-~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++.....+ .|.++.-..+|-+.+++..-+ . ....++ ++
T Consensus 35 D~dG~~ylD~~~g~~~~~lG--h~~p~i~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~-~----~~~~~~-~f 106 (442)
T TIGR00709 35 DVEGKEYLDFLAGAGTLALG--HNHPNMKQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPK-R----KMDYKL-QF 106 (442)
T ss_pred eCCCCEEEEccccHhhhcCC--CCCHHHHHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCC-c----CCCccE-EE
Confidence 34677788887665444445 456778877666553310011 123333333333333333211 0 001232 34
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh-CC-----------CcceeEeccCCcCc------cccH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA-GF-----------TEAREYRYWNPEKR------AVDF 143 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~-g~-----------~~~~~~~~~~~~~~------~~d~ 143 (218)
.+.+|++|...++++.+....-.+|+...-+|.......... +. ..+..+++...... ..+.
T Consensus 107 ~~~sGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (442)
T TIGR00709 107 PGPSGADAVEAAIKLAKTYTGRTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGS 186 (442)
T ss_pred eCCCHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHH
Confidence 567889999988886544433356777777777654333222 10 01222222100000 0011
Q ss_pred H----HHHHHHh---cC-CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 144 T----GMYEDLV---NA-PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 144 ~----~~~~~l~---~~-~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+ .+++.+. .. .+...+++-+-++|+... ++.++|++|++++|.| |++.||-..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~D--EV~tGfGRt 255 (442)
T TIGR00709 187 NASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILD--EVQAGFGRS 255 (442)
T ss_pred HHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCCC
Confidence 1 1223332 11 223445554544443222 7999999999999999 999998543
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >KOG0053|consensus | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00051 Score=60.75 Aligned_cols=101 Identities=13% Similarity=0.137 Sum_probs=73.1
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh----CCCcceeEeccCCcCccccHHHHHHHHhcCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA----GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~----g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 155 (218)
++.++.|+.|+..++..| +.+|+.++..+..|..-..+++.. |+ +...+. .-+++.+.++++ +
T Consensus 95 ~l~fsSGmaA~~~al~~L--~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gi-e~~~vd-------~~~~~~~~~~i~---~ 161 (409)
T KOG0053|consen 95 ALLFSSGMAAITVALLHL--LPAGDHIVATGDVYGGTLRILRKFLPKFGG-EGDFVD-------VDDLKKILKAIK---E 161 (409)
T ss_pred EEEecccHHHHHHHHHHh--cCCCCcEEEeCCCcccHHHHHHHHHHHhCc-eeeeec-------hhhHHHHHHhhc---c
Confidence 457888888888887766 567999999999999877766654 32 222221 125566666664 3
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
++.+++.=+|.||+.. .+.++|++++++++-| ..+...
T Consensus 162 ~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVD--nTf~~p 204 (409)
T KOG0053|consen 162 NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVD--NTFGSP 204 (409)
T ss_pred CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEe--CCcCcc
Confidence 4555555799999998 7999999999999999 666554
|
|
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00084 Score=59.36 Aligned_cols=143 Identities=15% Similarity=0.121 Sum_probs=88.3
Q ss_pred cCcCCCCcHHHHHHHHHHh---cCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH-hc-----CC-----C-eEEecC
Q psy6266 46 EYLPVLGLESFSSAATRML---LGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR-IL-----NY-----T-TFYYSK 110 (218)
Q Consensus 46 ~Y~~~~G~~~lr~aia~~~---~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~-l~-----~g-----d-~V~i~~ 110 (218)
.|.-+...-++=+.+.+++ ++ -.........-..+.|.||+++...++.+.+. +. .| + .|++++
T Consensus 70 ~~~~~P~~~~~E~~vi~~l~~l~g-~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~ 148 (373)
T PF00282_consen 70 TWEASPAATEIEREVIRWLADLFG-LPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSE 148 (373)
T ss_dssp STTTSHHHHHHHHHHHHHHHHHTT-GSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEET
T ss_pred ccccccccccchHHHHHHHHHHhC-CcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccc
Confidence 3444444555555565555 33 11000111113467999999988766554322 11 12 2 466666
Q ss_pred CCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC-C--CcEEEEcccCCCCcHH-----HHHHHhhcCeE
Q psy6266 111 PTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP-D--NSVIILHACAHNPTAQ-----QVAHMVDKHHV 182 (218)
Q Consensus 111 P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~--~~~iil~~~p~NPTG~-----~l~~l~~~~~i 182 (218)
=+..+-.......|+ .++.+|.. + ...+|++.+++.|++.. . ..++++-+...-.||. +|.++|+++++
T Consensus 149 ~aH~S~~Kaa~~lGl-g~~~I~~~-~-~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~ 225 (373)
T PF00282_consen 149 QAHYSIEKAARILGL-GVRKIPTD-E-DGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNI 225 (373)
T ss_dssp TS-THHHHHHHHTTS-EEEEE-BB-T-TSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-
T ss_pred ccccHHHHhcceeee-EEEEecCC-c-chhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccce
Confidence 577777788899999 89999884 2 46789999998886531 2 1334444566667786 89999999999
Q ss_pred EEeeCCceeecc
Q psy6266 183 YLLRSGRINMCG 194 (218)
Q Consensus 183 ~ii~D~r~~y~~ 194 (218)
|+-.| -+|.|
T Consensus 226 wlHVD--aA~gg 235 (373)
T PF00282_consen 226 WLHVD--AAYGG 235 (373)
T ss_dssp EEEEE--ETTGG
T ss_pred eeeec--ccccc
Confidence 99999 88888
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.002 Score=56.83 Aligned_cols=176 Identities=12% Similarity=0.038 Sum_probs=94.9
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++.........+..-..+|-+.++++. + .+++ +-
T Consensus 20 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~-~--------~~~v--~~ 86 (364)
T PRK04013 20 DSQGRRYLDLIAGIGVNVLG--HNHPEWVEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWV-N--------YEYV--YM 86 (364)
T ss_pred ECCCCEEEEcccChhhccCC--CCCHHHHHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhc-C--------CCEE--EE
Confidence 35688888886664333445 3456677776665543111111122322334444444332 2 1343 47
Q ss_pred eccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHHHHHHhCCCccee----EeccCCcC---ccccHHHHHHHHhcCC
Q psy6266 83 TLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEARE----YRYWNPEK---RAVDFTGMYEDLVNAP 154 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~----~~~~~~~~---~~~d~~~~~~~l~~~~ 154 (218)
+.+|++|...++.+.... +| ++|+..+-+|.......-.... .+.. -|.+ .+. .-.|.+.+++.+.+
T Consensus 87 ~~SGseA~e~Alklar~~-~gr~~Ii~~~~syHG~t~~~ls~~~-~~~~~~~~~p~~-~~~~~~~~~d~~~l~~~i~~-- 161 (364)
T PRK04013 87 GNSGTEAVEAALKFARLY-TGRKEIIAMTNAFHGRTMGALSATW-KPKYREDFEPLV-PGFKHIPFNDVEAAKEAITK-- 161 (364)
T ss_pred eCchHHHHHHHHHHHHHH-hCCCEEEEECCccccCchhhccCCC-CcccccCCCCCC-CCcEEecCCCHHHHHHHhcC--
Confidence 788999999998876543 56 8999998888775432222111 1100 0110 000 01156667666642
Q ss_pred CCcEEEEcccCC------CCcHH--HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 155 DNSVIILHACAH------NPTAQ--QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 155 ~~~~iil~~~p~------NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+...+++-+-.. -|.+. ++.++|++|++.+|.| |+..|+-.+
T Consensus 162 ~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~D--Ev~tG~RtG 211 (364)
T PRK04013 162 ETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIAD--EVQSGLRTG 211 (364)
T ss_pred CcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--chhhcCCCC
Confidence 222333332222 12233 7999999999999999 998887444
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0015 Score=60.02 Aligned_cols=102 Identities=11% Similarity=0.109 Sum_probs=77.7
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCc----cccHHHHHHHHhcCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKR----AVDFTGMYEDLVNAPD 155 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~----~~d~~~~~~~l~~~~~ 155 (218)
-+++.|.|.|...+.+++ +.+||.|+++..+.=+....+.++|+ +|+++.-.....+ +++.+.+.+++.+.+.
T Consensus 89 yFvvNGTS~ank~vi~a~--~~~GD~VLvdRN~HKSi~~glilaGa-~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~~~ 165 (557)
T COG1982 89 YFVVNGTSTANKAVINAV--LTPGDKVLVDRNCHKSIHHGLILAGA-TPVYLEPSRNPLYGIIGGIPLETFKEALLAHPD 165 (557)
T ss_pred EEEECCccHHHHHHHHhh--cCCCCEEEecCCccHHHHHHHHHcCC-ceEEecCCCCccccccCCCCHHHHHHHHHhChh
Confidence 469999999999988877 67999999999998887777888999 8888754222223 4488999988876544
Q ss_pred C-cEEEEcccCCCCc--HH-----HHHHHhhcCeEEEeeCC
Q psy6266 156 N-SVIILHACAHNPT--AQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 156 ~-~~iil~~~p~NPT--G~-----~l~~l~~~~~i~ii~D~ 188 (218)
. ..+++ .||| |. +|.+.+.+.++|+.-|+
T Consensus 166 ~~k~~vi----tnpTYdGv~~n~~~i~~~~~~~~a~v~~de 202 (557)
T COG1982 166 AEKLAVI----TNPTYDGVCYNLRKIVELLHHYGAWVLYDE 202 (557)
T ss_pred hheeEEE----ecCccceEeecHHHHHHHHhhcCceEEhhh
Confidence 4 34444 3444 33 88999999999999995
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00059 Score=66.41 Aligned_cols=134 Identities=11% Similarity=0.138 Sum_probs=88.5
Q ss_pred ccCcC---CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh------cCCCeEEecCCCchh
Q psy6266 45 HEYLP---VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI------LNYTTFYYSKPTWEN 115 (218)
Q Consensus 45 ~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l------~~gd~V~i~~P~y~~ 115 (218)
|.|.| ++|..++-....+++.. -.+ .+ .+ +++..|+++|-..++++++.. ..-++|++|.-..+.
T Consensus 517 hPyqPe~~sqG~lq~i~elq~~l~e-ltG--md--~~-Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgt 590 (939)
T TIGR00461 517 HPFQPSNQVEGYQELIAQLEKWLCS-ITG--FD--AI-SLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGT 590 (939)
T ss_pred CCCCchHHhHHHHHHHHHHHHHHHH-HHC--CC--Cc-ccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCc
Confidence 44554 35655555555555532 111 22 22 457777777666555554421 123578899888855
Q ss_pred HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH------HHHHHhhcCeEEEeeCC
Q psy6266 116 HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ------QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 116 y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~------~l~~l~~~~~i~ii~D~ 188 (218)
.....+..|+ +++.++.. +...+|++.+++.+.+...++.+++..+|+| +|. +|.+++++++.+++-||
T Consensus 591 nPasa~~~G~-~Vv~V~~d--~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDg 665 (939)
T TIGR00461 591 NPASAAMAGM-QVVPVNCD--QDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDG 665 (939)
T ss_pred CHHHHHHCCC-EEEEeccC--CCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEe
Confidence 5666788999 99999873 3467899999999975323455565667888 786 68899999989999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0035 Score=56.16 Aligned_cols=179 Identities=12% Similarity=0.071 Sum_probs=93.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc--CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE--YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..... ..+. +.+..+++++.. .. + -..+++ .
T Consensus 39 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~-~~~~~~~~~~~----~~~~~la~~l~~-~~-p-~~~~~v--~ 106 (423)
T PRK05964 39 ADGRELIDAISSWWVATHG--HNHPYIDQAIREQLDR-LDHVIFAGFTH----EPAERLAQRLVA-LT-P-GGLDHV--F 106 (423)
T ss_pred CCCCEEEEcchhHHhccCC--CCCHHHHHHHHHHHhh-CCCccccccCC----HHHHHHHHHHHH-hC-C-CCCCEE--E
Confidence 4577778887664433455 4467888887666543 11111 1122 233444555432 11 0 011344 4
Q ss_pred EeccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHHHHHHhCCCc------------ceeEeccCCcCccccH
Q psy6266 82 QTLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRLVFLNAGFTE------------AREYRYWNPEKRAVDF 143 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~~~~~~g~~~------------~~~~~~~~~~~~~~d~ 143 (218)
-+.+|++|...++++.+... +| .+|+...-+|.............. ...+++...+....++
T Consensus 107 f~~sGseA~e~A~klar~~~~~~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 186 (423)
T PRK05964 107 FSDSGSVAVEVALKMALQYWRNRGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATL 186 (423)
T ss_pred EeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHH
Confidence 67888898888877654331 33 478888877776433222222101 1111110000000125
Q ss_pred HHHHHHHhcCCCCc-EEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 144 TGMYEDLVNAPDNS-VIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 144 ~~~~~~l~~~~~~~-~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+.+++.+.+..... .+++-+-.++.+|. +|.++|++|++.+|.| |++.++-
T Consensus 187 ~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~D--Ev~tg~g 247 (423)
T PRK05964 187 DALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFD--EIATGFG 247 (423)
T ss_pred HHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe--chhhCCC
Confidence 66666665332222 23332212444443 7999999999999999 9988773
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0042 Score=56.24 Aligned_cols=185 Identities=8% Similarity=0.015 Sum_probs=91.0
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| .-.|.|.+|.++.++. ..+..... -.-+.+..+++++.. .-.. ...+++ .-
T Consensus 50 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~~~~~~~-~~~~~~~~la~~L~~-~~p~-~~~~~v--~f 120 (451)
T PRK06918 50 DVDGNQYIDFAGAIGTINVG--HSHPKVKEALHKQVDQ--YIHTGFNV-MMYEPYIELAEKLAA-LAPG-SFDKKV--LF 120 (451)
T ss_pred eCCCCEEEEcCCchhhcCCC--CCCHHHHHHHHHHHHh--ccCccccc-cccHHHHHHHHHHHH-hCCC-CCCCEE--EE
Confidence 34677778876665333445 4567788887665543 22111110 112233444455432 1100 011344 57
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCc-------------ceeEeccCC--cCcccc-----
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTE-------------AREYRYWNP--EKRAVD----- 142 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~-------------~~~~~~~~~--~~~~~d----- 142 (218)
+.+|++|...++.+-+....-..|+...-+|-........+.... +..+|+... ...+..
T Consensus 121 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (451)
T PRK06918 121 LNSGAEAVENAVKIARKYTKRQGIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYD 200 (451)
T ss_pred cCCcHHHHHHHHHHHHHHhCCCcEEEECCCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHH
Confidence 888899988888765444333567777777766543222221100 111111000 000110
Q ss_pred ---HHHHHHHHhc-CCCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 143 ---FTGMYEDLVN-APDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 143 ---~~~~~~~l~~-~~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+.+.+.+.. ..+..+.-++.-|-+.+|. +|.++|++|++++|.| |+|.++.+.
T Consensus 201 ~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI~D--EV~tg~gr~ 268 (451)
T PRK06918 201 DFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFVAD--EIQTGFART 268 (451)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCcCcc
Confidence 1122322221 1122232222234444321 7999999999999999 999998654
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00069 Score=60.22 Aligned_cols=124 Identities=19% Similarity=0.176 Sum_probs=74.6
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCce-EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH---H--H-----H
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRA-FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL---V--F-----L 121 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v-~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~---~--~-----~ 121 (218)
++.|....+..+|+ - .++.. .-++..+|+.|...++.+| ++|||+|+..++.-+.|.. . . .
T Consensus 67 iE~la~~ra~~lF~-~-----~~~~w~anvqp~SGs~An~av~~aL--l~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~ 138 (399)
T PF00464_consen 67 IEELAIERAKELFG-A-----EPKEWYANVQPHSGSQANLAVYMAL--LKPGDTIMGLSLPHGGHLSHGSSVNFKKISAS 138 (399)
T ss_dssp HHHHHHHHHHHHHT-------STTTEEEE---SSHHHHHHHHHHHH--T-TT-EEEEEEGGGT--GGGT-TTSHSBSSHH
T ss_pred HHHHHHHHHHHHhC-C-----CcccceEEeecCCchHHHHHHHHHH--HhhcCcEEecChhhcccccccccccccccccc
Confidence 66777777778887 3 22322 2357778888988888887 7899999999999877752 1 1 1
Q ss_pred HhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc-ccCCCCcHH-HHHHHhhcCeEEEeeC
Q psy6266 122 NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH-ACAHNPTAQ-QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 122 ~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~-~~p~NPTG~-~l~~l~~~~~i~ii~D 187 (218)
.... +.+.|+.. ++...+|++.+++.+++..|+ .|++= .++.-|--. .+.++|.+.+.+++.|
T Consensus 139 ~~~~-~~~~y~~d-~~~~~ID~d~l~~~a~~~kPk-lIi~G~S~y~~~~d~~~~reIad~vga~l~~D 203 (399)
T PF00464_consen 139 GLYF-ESVPYPVD-PDTGLIDYDELEKLAKEHKPK-LIICGASSYPRPIDFKRFREIADEVGAYLMAD 203 (399)
T ss_dssp HHHS-EEEEEEB--TTTSSB-HHHHHHHHHHH--S-EEEEE-SSTSS---HHHHHHHHHHTT-EEEEE
T ss_pred cceE-EEEeeeee-cCCCeECHHHHHHHHhhcCCC-EEEECchhccCccCHHHHHHHHHhcCcEEEec
Confidence 1234 56677763 456788999999988765333 33331 122222222 7889999999999999
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0028 Score=55.98 Aligned_cols=175 Identities=13% Similarity=0.097 Sum_probs=104.5
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|-..|...||+..|.--..-| ...|.+.+|.++-.+..- ..+-|. -+.+.++++++-. ... ..++|
T Consensus 37 ~D~~G~~YlDf~~Giav~~lG--H~hP~iv~al~~Q~~kl~h~sn~~~-----~~~~~~la~~L~~-~s~---~~d~v-- 103 (404)
T COG4992 37 WDQQGREYLDFAAGIAVNNLG--HCHPALVEALKEQAEKLWHVSNLFY-----NEPQAELAEKLVE-LSP---FADRV-- 103 (404)
T ss_pred ECCCCCEeeeeccceeeeccC--CCCHHHHHHHHHHHHHhhhcccccC-----ChHHHHHHHHHHh-hCc---cccEE--
Confidence 346788999998887666777 557888888766443210 011121 2345556666643 210 24665
Q ss_pred EEeccChhHHHHHHHHHHHhcC---CCeEEecCCCchhHHHHHHHhCCCcceeEeccCC--cCccc----cHHHHHHHHh
Q psy6266 81 VQTLSGTGALRVGAEFLHRILN---YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP--EKRAV----DFTGMYEDLV 151 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~---gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~--~~~~~----d~~~~~~~l~ 151 (218)
+-+++|++|...++.+-+++-. -.+++...=+|.......-+++. ++++...+.+ ..+.. |++++++++.
T Consensus 104 ff~NSGaEA~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~-~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~ 182 (404)
T COG4992 104 FFCNSGAEANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATG-QPKYRKGFGPLLPGFRHVPFNDIEALEAAID 182 (404)
T ss_pred EEcCCcHHHHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccC-ChhhccCCCCCCCCceecCCCCHHHHHHHhc
Confidence 5889999999999987666532 23677777777665433334444 4533222211 11111 8899999997
Q ss_pred cCCCCcEEEEcccCCC-------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 152 NAPDNSVIILHACAHN-------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 152 ~~~~~~~iil~~~p~N-------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+ .+..++.=.=+- |.|. .+.++|++|++.+|.| |+=.|+
T Consensus 183 ~---~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~D--EVQtG~ 230 (404)
T COG4992 183 E---DTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILD--EVQTGL 230 (404)
T ss_pred c---CeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEe--ccccCC
Confidence 5 333333210111 2233 7999999999999999 887776
|
|
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0013 Score=59.45 Aligned_cols=157 Identities=17% Similarity=0.100 Sum_probs=89.2
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC---CCC------cHH-HHHHHHHHhcCCCCCCCcCCCc
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP---VLG------LES-FSSAATRMLLGGDASPPLREGR 77 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~---~~G------~~~-lr~aia~~~~~~~~~~~~~~~~ 77 (218)
..|||-... + .+++.|++++....... ....|.. ..| +++ -|+.+++++ + .++++
T Consensus 35 ~~l~l~~se----n---~~s~~v~~~~~~~l~~~-y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~lf-~------a~~~~ 99 (452)
T PTZ00094 35 EGLELIASE----N---FTSRAVLECLGSCFTNK-YAEGLPGNRYYGGNEVVDKIENLCQKRALEAF-G------LDPEE 99 (452)
T ss_pred cCeeEeccc----c---cCCHHHHHHhcchhhcc-ccCCCCCccccccchHHHHHHHHHHHHHHHHh-C------CCccc
Confidence 345666663 2 46788888876655321 0001111 233 222 334444443 3 22344
Q ss_pred e-EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh--------C--CCcceeEeccCCcCccccHHHH
Q psy6266 78 A-FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA--------G--FTEAREYRYWNPEKRAVDFTGM 146 (218)
Q Consensus 78 v-~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~--------g--~~~~~~~~~~~~~~~~~d~~~~ 146 (218)
+ ..+++.+++++..+++.++ +.|||.|++.+.-++.+....... + . .+..++. +. ...+|.+.+
T Consensus 100 ~~~~~~~~sgt~an~~v~~al--~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~-~~~~~~~-~~-~g~id~~~L 174 (452)
T PTZ00094 100 WGVNVQPYSGSPANFAVYTAL--LQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYF-ESLPYQV-NE-KGLIDYDKL 174 (452)
T ss_pred ceeecCCCchHHHHHHHHHHh--cCCCCEEEecccccCCcccccccccccccccceeee-eeeeccc-CC-CCCcCHHHH
Confidence 3 2234478888888888877 679999999877766654322110 1 1 1223322 22 356799999
Q ss_pred HHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 147 YEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 147 ~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
++.+++..++ .+++ . ++.+|. +|.++|++++++++.|+
T Consensus 175 ~~~l~~~~~~-lvi~--~-~s~~g~~~di~~I~~i~~~~ga~l~vDa 217 (452)
T PTZ00094 175 EELAKAFRPK-LIIA--G-ASAYPRDIDYKRFREICDSVGAYLMADI 217 (452)
T ss_pred HHHHHHhCCC-EEEE--e-CCCCCCccCHHHHHHHHHHcCCEEEEec
Confidence 9998643232 3333 1 334776 78999999999999994
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0048 Score=55.36 Aligned_cols=180 Identities=12% Similarity=0.070 Sum_probs=91.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccC--cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEY--LPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. .....+ .+.....+|-+.+++..-. -..+++ .
T Consensus 37 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~-~~~~~~~~~~~~~~~~la~~l~~~~p~------~~~~~~--~ 105 (421)
T PRK06777 37 VEGREYIDFAAGIAVLNTG--HRHPKVVAAVRQQLDQ-FTHTAYQIVPYASYVTLAERINALAPI------DGPAKT--A 105 (421)
T ss_pred CCCCEEEEcccCHHhhccC--CCCHHHHHHHHHHHhh-cccccccccCChHHHHHHHHHHHhCCC------CCCceE--E
Confidence 4577777876653322344 4466777777666543 111112 2232233344444332210 011344 3
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcc-------------eeEeccCCcCcc----ccHH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEA-------------REYRYWNPEKRA----VDFT 144 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~-------------~~~~~~~~~~~~----~d~~ 144 (218)
-+.+|++|...++++.+....-..|+...-+|-.............. ..+++. ....+ .+++
T Consensus 106 f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~ 184 (421)
T PRK06777 106 FFTTGAEAVENAVKIARAYTGRPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYP-NELHGVSVEEALS 184 (421)
T ss_pred EeCCcHHHHHHHHHHHHHhhCCCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCC-ccccCcCHHHHHH
Confidence 56788898888887654332234677777777665432222211011 111110 00001 1355
Q ss_pred HHHHHHhc--CCCC-cEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 145 GMYEDLVN--APDN-SVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 145 ~~~~~l~~--~~~~-~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+++.+.+ ...+ ..+++- .-++..|. +|.++|++|++++|.| |+|.++.+.
T Consensus 185 ~l~~~~~~~~~~~~iaavi~E-pv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~D--Ev~tg~gr~ 247 (421)
T PRK06777 185 SVERLFKADIAPDQVAAILLE-PIQGEGGFNVAPPEFMSALRTLCDEHGILLIAD--EVQTGFART 247 (421)
T ss_pred HHHHHHHhccCCCceEEEEEC-CccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhhCCccC
Confidence 56666642 1122 233332 23444442 7999999999999999 999998544
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0016 Score=63.38 Aligned_cols=136 Identities=15% Similarity=0.142 Sum_probs=88.4
Q ss_pred CccCcC---CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh-----cC-CCeEEecCCCch
Q psy6266 44 NHEYLP---VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI-----LN-YTTFYYSKPTWE 114 (218)
Q Consensus 44 ~~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l-----~~-gd~V~i~~P~y~ 114 (218)
.|-|.| ++|..+....+.+++.. +..-.+..++-.++..|-..++++++.. ++ .++|+++.-.++
T Consensus 529 ~hPyqp~e~sQG~lq~i~elq~~l~e------LtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHg 602 (954)
T PRK12566 529 LHPFAPREQAEGYRAMIDELEAWLCA------ITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHG 602 (954)
T ss_pred CCCCCchhhhcCHHHHHHHHHHHHHH------HHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccc
Confidence 367888 88987777666665533 1111223445445566665566665431 12 367788877664
Q ss_pred hHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 115 NHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 115 ~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
.........|+ +++.++.. + ...+|++.+++.+.+..++...+.+.+|++=.+. +|.+++++++..++-||
T Consensus 603 tNpasa~~~Gi-eVv~Vp~D-~-~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDg 678 (954)
T PRK12566 603 TNPASAQMAGM-RVVIVECD-P-DGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDG 678 (954)
T ss_pred cCHHHHHHCCC-EEEEeccC-C-CCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEe
Confidence 44555677899 89999873 3 4578999999999744345555555555554443 68899999999988897
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0072 Score=54.10 Aligned_cols=182 Identities=10% Similarity=-0.001 Sum_probs=93.0
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCC--CCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDA--SPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~--~~~~~~~~v~~~ 81 (218)
..|...||+.-|.....-| ...|.|.+|.++.+++ ..+.+.. .-.-+.+..+++++.. .- .... .+++ .+
T Consensus 32 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~--~~~~~~~-~~~~~~~~~lae~l~~-~~~~~~~~-~~~~-~f 103 (412)
T TIGR02407 32 EDGKEYIDFFAGAGALNYG--HNNPKLKQALIDYLAD--DGIIHSL-DMATEAKREFLETFNE-IILKPRGL-DYKV-QF 103 (412)
T ss_pred CCCCEEEEcccchhhccCC--CCCHHHHHHHHHHHhh--ccceecc-ccCcHHHHHHHHHHHH-hccCccCC-CceE-EE
Confidence 4577778876664333445 4577888887665532 1111111 1112333344444432 10 0001 1233 23
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCc------------ceeEeccCCcC-ccccHHHHHH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTE------------AREYRYWNPEK-RAVDFTGMYE 148 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~------------~~~~~~~~~~~-~~~d~~~~~~ 148 (218)
.+.+|++|...++++.+......+|+...-+|-............. ...+|+..... ..-+++.+++
T Consensus 104 ~~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~ 183 (412)
T TIGR02407 104 PGPTGTNAVESALKLARKVTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEK 183 (412)
T ss_pred eCCCchHHHHHHHHHHhhhcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHH
Confidence 4578899998888865444333578877877776543222221101 11122100000 0013555666
Q ss_pred HHhcCC---CCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 149 DLVNAP---DNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 149 ~l~~~~---~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.+.+.. .....++.-.-+++.|. +|.++|++|++++|.| |++.|+
T Consensus 184 ~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D--EV~tG~ 240 (412)
T TIGR02407 184 LLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVD--DIQAGC 240 (412)
T ss_pred HHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhhCC
Confidence 665321 12233333334554553 7999999999999999 999876
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0029 Score=53.15 Aligned_cols=120 Identities=16% Similarity=0.086 Sum_probs=84.0
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCC-chhHHHHHHHhCCCcceeE
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPT-WENHRLVFLNAGFTEAREY 131 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~-y~~y~~~~~~~g~~~~~~~ 131 (218)
+..|.+-+++++ + - +.+. +|.|+-+|.++++.++ ..+||.|++..-. |.+|. ..+.+|+ ++..+
T Consensus 63 I~~F~~dlaeFl-g-~-------D~~R--~t~GARe~KfavMhal--~~~gd~vV~D~~aHYttyv-AAEragl-~v~eV 127 (382)
T COG1103 63 IKDFLEDLAEFL-G-M-------DEVR--VTAGAREAKFAVMHAL--CKEGDWVVVDSLAHYTTYV-AAERAGL-NVAEV 127 (382)
T ss_pred HHHHHHHHHHHh-C-C-------ceee--ecccchhhHHHHHHHh--ccCCCEEEEcCcchHHHHH-HHHhcCC-eEEec
Confidence 566777777765 2 1 2233 8999999999999988 5689999887554 66665 5578999 89999
Q ss_pred eccCCcCccccHHHHHHHHhcCC-C--C-cE-EEE-c--ccCCCCcHH-HHHHHhhcCeEEEeeC
Q psy6266 132 RYWNPEKRAVDFTGMYEDLVNAP-D--N-SV-IIL-H--ACAHNPTAQ-QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 132 ~~~~~~~~~~d~~~~~~~l~~~~-~--~-~~-iil-~--~~p~NPTG~-~l~~l~~~~~i~ii~D 187 (218)
|-..-....++.+...+.|++.. + . .. +++ + .+..|-+-+ .++++|+++++.++-.
T Consensus 128 p~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN 192 (382)
T COG1103 128 PNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLN 192 (382)
T ss_pred CCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEee
Confidence 86433446678888777776531 1 1 22 222 2 245666555 8999999999999977
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0013 Score=57.36 Aligned_cols=118 Identities=17% Similarity=0.188 Sum_probs=84.9
Q ss_pred cCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH---
Q psy6266 46 EYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF--- 120 (218)
Q Consensus 46 ~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~--- 120 (218)
-|+-. .-...|-+.++.+--| +..+-|.+|+.|+..++.-+ +.+||.|+..+--|+.-...|
T Consensus 55 iYsRi~NPT~~vlE~RiAaLEGG-----------~aa~a~aSG~AA~~~ai~~l--a~aGD~iVss~~LYGGT~~lf~~t 121 (426)
T COG2873 55 IYTRIMNPTTDVLEERIAALEGG-----------VAALAVASGQAAITYAILNL--AGAGDNIVSSSKLYGGTYNLFSHT 121 (426)
T ss_pred eeeeccCchHHHHHHHHHHhhcc-----------hhhhhhccchHHHHHHHHHh--ccCCCeeEeeccccCchHHHHHHH
Confidence 35542 3456677777765433 22356778888888877655 579999999988888755544
Q ss_pred -HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 121 -LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 121 -~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
+..|. ++..+ +. .|.+.+++++. +++++++.=+-.||-+. .|+++|++|++.+|.|
T Consensus 122 l~~~Gi-~v~fv---d~----~d~~~~~~aI~---~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVD 183 (426)
T COG2873 122 LKRLGI-EVRFV---DP----DDPENFEAAID---ENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVD 183 (426)
T ss_pred HHhcCc-EEEEe---CC----CCHHHHHHHhC---cccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEe
Confidence 55677 66665 22 36889999886 45566665678999886 7999999999999999
|
|
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.021 Score=51.97 Aligned_cols=166 Identities=11% Similarity=0.006 Sum_probs=94.5
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCc----HHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGL----ESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~----~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
...+|++-=.|- | ....|.|+++..+.+++-+ +...-....|. .+|=+++++++.. +. ++
T Consensus 102 r~~l~FsSndYL---G-L~~~p~v~~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~---------e~--al 166 (476)
T PLN02955 102 KKLLLFSGNDYL---G-LSSHPTISNAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKK---------ED--CL 166 (476)
T ss_pred ceEEEeeccCcc---C-CCCCHHHHHHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCC---------Cc--EE
Confidence 367888777663 2 4556778877776665411 11111124565 6677788877633 22 23
Q ss_pred EeccChhHHHHHHHHHHH------------hcCCCeEEecCCC-chhHHHHHHHh----CCCcceeEeccCCcCccccHH
Q psy6266 82 QTLSGTGALRVGAEFLHR------------ILNYTTFYYSKPT-WENHRLVFLNA----GFTEAREYRYWNPEKRAVDFT 144 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~------------l~~gd~V~i~~P~-y~~y~~~~~~~----g~~~~~~~~~~~~~~~~~d~~ 144 (218)
+.+.|-.|-..++.+|.. ...+|.| +.|.. ..+-..-+++. ++ +++.|+ ..|++
T Consensus 167 l~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~i-~~D~~~HaSI~dG~~ls~~~~~a-~~~~f~-------HND~~ 237 (476)
T PLN02955 167 VCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVAI-FSDALNHASIIDGVRLAERQGNV-EVFVYR-------HCDMY 237 (476)
T ss_pred EECChHHHHHHHHHHHhhccccccccccccCCCCcEE-EEeccchHHHHHHHHhccccCCc-eEEEeC-------CCCHH
Confidence 555555544444444310 0223444 44554 33333333433 23 333332 23788
Q ss_pred HHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 145 GMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 145 ~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+++.|++.+.+..+++.-.--++.|. +|.+++++|+.++|-| |++.....+
T Consensus 238 ~Le~~L~~~~~~~~~Vv~EgV~SmdGdiapL~eL~~L~~~~ga~LiVD--EAH~~Gv~G 294 (476)
T PLN02955 238 HLNSLLSSCKMKRKVVVTDSLFSMDGDFAPMEELSQLRKKYGFLLVID--DAHGTFVCG 294 (476)
T ss_pred HHHHHHHhCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCcEEEEc--ccccCceec
Confidence 888888765333445555556778885 8999999999999999 888755544
|
|
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0019 Score=59.65 Aligned_cols=112 Identities=10% Similarity=0.016 Sum_probs=77.8
Q ss_pred EEEeccChhHHHHHHHHHHH--hc----------------------CCCeEEecCCCchhHHHHHHHhCC--CcceeEec
Q psy6266 80 GVQTLSGTGALRVGAEFLHR--IL----------------------NYTTFYYSKPTWENHRLVFLNAGF--TEAREYRY 133 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~--l~----------------------~gd~V~i~~P~y~~y~~~~~~~g~--~~~~~~~~ 133 (218)
.+.|.|||.|.-.++.+-+. +. ++..|++++-...+....++..|+ .+++.+|.
T Consensus 162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~ 241 (522)
T TIGR03799 162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKT 241 (522)
T ss_pred eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEe
Confidence 46789999987766554222 11 234688888877777777777775 13667776
Q ss_pred cCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 134 WNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 134 ~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
. +...+|.+.+++.|++. ..+.++++....++.||. +|+++|+++++|+..| -+|.+.
T Consensus 242 d--~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDpl~eIa~i~~~~g~~lHVD--aA~gg~ 307 (522)
T TIGR03799 242 D--ANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDPLDEMADIAQELGCHFHVD--AAWGGA 307 (522)
T ss_pred C--CCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCCHHHHHHHHHHcCCeEEEE--chhhhH
Confidence 2 34678999999988642 223344444455678998 8999999999999999 777753
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0051 Score=55.12 Aligned_cols=182 Identities=10% Similarity=0.075 Sum_probs=89.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccC--cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEY--LPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y--~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..|...||+.-|.....-| ...|.|.+|.++.+++ .....+ .+..-..+|-+.+++..-+ ...+++ .
T Consensus 30 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~a~~~ql~~-~~~~~~~~~~~~~~~~la~~l~~~~p~------~~~~~v--~ 98 (420)
T TIGR00700 30 VDGNRLIDFASGIAVLNIG--HSHPRVVDAVRTQVAE-FTHTCFMVTPYEGYVALAEKLNRIAPG------SGPKKS--V 98 (420)
T ss_pred CCCCEEEECccCHHhccCC--CCCHHHHHHHHHHHHh-ccCccccccCChHHHHHHHHHHHhCCC------CCCCEE--E
Confidence 4577777876664333345 4467788776665543 111111 2222223343333332211 111344 4
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCC-------------cceeEeccCCc-------Cccc
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT-------------EAREYRYWNPE-------KRAV 141 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~-------------~~~~~~~~~~~-------~~~~ 141 (218)
-+.+|++|...++.+-+.......|+...-+|-........+... ....+++.... ....
T Consensus 99 f~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (420)
T TIGR00700 99 FFNSGAEAVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLST 178 (420)
T ss_pred EeCCcHHHHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhH
Confidence 667888988888876544433356777777776654322222110 01111110000 0000
Q ss_pred --cHHHHHHHHh--cCCCC-cEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 142 --DFTGMYEDLV--NAPDN-SVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 142 --d~~~~~~~l~--~~~~~-~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+++.+++.+. ...+. ..+++-+-..+ |-+. +|.++|++|++++|.| |+|.++.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~D--EV~tg~gr~ 246 (420)
T TIGR00700 179 DGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIAD--EVQTGFART 246 (420)
T ss_pred HHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEE--ecccCCccc
Confidence 2445555553 11122 22333221111 2221 7999999999999999 999998654
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0045 Score=56.24 Aligned_cols=181 Identities=12% Similarity=0.043 Sum_probs=90.1
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++. ..+ +......-+.+..+++.+.. ... -..+++ .-
T Consensus 48 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~Av~~q~~~--~~~-~~~~~~~~~~~~~la~~l~~-~~p--~~~~~v--~f 117 (460)
T PRK06541 48 DDRGKRYLDGLAGLFVVQVG--HGRAELAEAAAKQAGT--LAF-FPLWSYAHPPAIELAERLAA-LAP--GDLNRV--FF 117 (460)
T ss_pred eCCCCEEEECCccHHhccCC--CCCHHHHHHHHHHHhh--CcC-ccccccCCHHHHHHHHHHHH-hCC--CCcCEE--EE
Confidence 35677778876664333455 4467788876665543 111 11111111222333444422 110 011454 46
Q ss_pred eccChhHHHHHHHHHHHhc--C----CCeEEecCCCchhHHHH-HHHhCCC-----------cceeEeccCCcC---ccc
Q psy6266 83 TLSGTGALRVGAEFLHRIL--N----YTTFYYSKPTWENHRLV-FLNAGFT-----------EAREYRYWNPEK---RAV 141 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~--~----gd~V~i~~P~y~~y~~~-~~~~g~~-----------~~~~~~~~~~~~---~~~ 141 (218)
+.+|++|...++.+.+... . -.+|+...=+|-..... +...|.. .+..+|....-. ++.
T Consensus 118 ~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 197 (460)
T PRK06541 118 TTGGSEAVESAWKLAKQYFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGD 197 (460)
T ss_pred cCCcHHHHHHHHHHHHHHHHhcCCCCccEEEEEcCcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCC
Confidence 7888898888777544321 1 25677766666554321 1111110 011122100000 001
Q ss_pred c--------HHHHHHHHhcCCCCcEEEEcccC-CCCcHH---------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 142 D--------FTGMYEDLVNAPDNSVIILHACA-HNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 142 d--------~~~~~~~l~~~~~~~~iil~~~p-~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+ .+.+++.+.+..++.+..++..| ++++|. +|.++|+++++.+|.| |++.|+
T Consensus 198 ~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~D--EV~tGf 267 (460)
T PRK06541 198 DPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLLVSD--EVICAF 267 (460)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhhCC
Confidence 1 24455555432123333333345 666554 7999999999999999 999887
|
|
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0029 Score=54.82 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=90.4
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCC
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYT 104 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd 104 (218)
-+-+.+++|+.++-. .....|....=...+-+.+++. ++ + +.++-+++||+|-.+++.+. +.||+
T Consensus 11 g~~~~m~eam~~a~~--~~~~~YG~D~~~~~~e~~~ae~-~g-~---------~a~~Fv~sGT~aN~lal~~~--~~~~~ 75 (342)
T COG2008 11 GPTPEMREALAAANA--VGDDVYGEDPTTNALEQRIAEL-FG-K---------EAALFVPSGTQANQLALAAH--CQPGE 75 (342)
T ss_pred CCCHHHHHHHHhccc--cCCCCCCCCHHHHHHHHHHHHH-hC-C---------ceEEEecCccHHHHHHHHHh--cCCCC
Confidence 356778887766542 2345575554444444433332 33 1 23456778888888888776 57999
Q ss_pred eEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC----CCCcEEEEcccCCCCcHH-------
Q psy6266 105 TFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA----PDNSVIILHACAHNPTAQ------- 171 (218)
Q Consensus 105 ~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~----~~~~~iil~~~p~NPTG~------- 171 (218)
+|++-.-+...-. ...+..+. ...++.-......++++.++..+... .+++.+++.+ .+|=-|.
T Consensus 76 ~vi~~~~aHi~~~E~Ga~~~~~~--~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~-~~te~GtVy~l~el 152 (342)
T COG2008 76 SVICHETAHIYTDECGAPEFFGG--GQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLEN-TATEGGTVYPLDEL 152 (342)
T ss_pred eEEEeccccceecccCcHHHHcC--CceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEee-ccCCCceecCHHHH
Confidence 9998877643311 12233321 23333333355688999999988641 2334444432 3343365
Q ss_pred -HHHHHhhcCeEEEeeCC-ceeec
Q psy6266 172 -QVAHMVDKHHVYLLRSG-RINMC 193 (218)
Q Consensus 172 -~l~~l~~~~~i~ii~D~-r~~y~ 193 (218)
+|.++|+++++.+.-|| |..+.
T Consensus 153 ~~i~~~~k~~~l~LHmDGAR~~nA 176 (342)
T COG2008 153 EAISAVCKEHGLPLHMDGARLANA 176 (342)
T ss_pred HHHHHHHHHhCCceeechHHHHHH
Confidence 78899999999999999 54443
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.008 Score=54.86 Aligned_cols=101 Identities=16% Similarity=0.087 Sum_probs=60.9
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCC---CchhHHHHHHHhC--CCcce--eEec-cCCcCccccHHHHHHHHhcC
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKP---TWENHRLVFLNAG--FTEAR--EYRY-WNPEKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P---~y~~y~~~~~~~g--~~~~~--~~~~-~~~~~~~~d~~~~~~~l~~~ 153 (218)
+...|+.|...++.++ +.|||+|+..+. ++.+|........ ..... .+++ ++.+...+|++.+++.+.+.
T Consensus 105 ~~~SG~~AN~av~~aL--~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~~ 182 (475)
T PLN03226 105 QPLSGSPANFAVYTAL--LQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAMLF 182 (475)
T ss_pred CcCchHHHHHHHHHHh--CCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhhc
Confidence 4466777877777777 789999998553 3444544332211 10111 1122 13345677999999988653
Q ss_pred CCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 154 PDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
.++ .+++ . .++ +|. +|.++|++++.+++.|+
T Consensus 183 ~pk-lIv~-~-~S~-~s~~~D~a~i~~ia~~~ga~LlvD~ 218 (475)
T PLN03226 183 RPK-LIIA-G-ASA-YPRDWDYARMRKIADKVGALLMCDM 218 (475)
T ss_pred CCe-EEEE-e-cCc-CCCccCHHHHHHHHHHcCCEEEEEc
Confidence 222 3333 2 223 333 78899999999999994
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.006 Score=59.22 Aligned_cols=164 Identities=13% Similarity=0.056 Sum_probs=90.3
Q ss_pred EEeCCCCCccCc-hHHHHHHHHHhhcC-CCCc-cCcC----CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChh
Q psy6266 16 AYRTEECKPWVL-PVVRQAEKELAADD-SLNH-EYLP----VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTG 88 (218)
Q Consensus 16 ~~~~~~~~~~~~-~~v~~a~~~~~~~~-~~~~-~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~ 88 (218)
+|-|..+..+.+ ..|.++........ ...+ .|.. ..=+.+.|+.+++++.. +++++.++-|.|+|+
T Consensus 36 iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~~~~s~~~~~~~e~aR~~ia~~lga-------~~~~~~VvFtsnaT~ 108 (805)
T PLN02724 36 VYLDHAGATLYSESQLEAALADFSSNVYGNPHSQSDSSMRSSDTIESARQQVLEYFNA-------PPSDYACVFTSGATA 108 (805)
T ss_pred EeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcCcchhhhHHHHHHHHHHHHHHHhCC-------CccceEEEEeCChHH
Confidence 465555544434 46666655554321 1111 1111 11256778888876532 233333468899999
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH---HhCCCcceeEeccCC------cCccccH--HHHHHHHh----c-
Q psy6266 89 ALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL---NAGFTEAREYRYWNP------EKRAVDF--TGMYEDLV----N- 152 (218)
Q Consensus 89 al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~---~~g~~~~~~~~~~~~------~~~~~d~--~~~~~~l~----~- 152 (218)
|+.+++..+. +.+||+|+++.--+++-....+ ..|+ +++.++.... +...++. +.+.+.++ .
T Consensus 109 alnlva~~l~-~~~gd~Iv~t~~eH~svl~~~~~a~~~G~-~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~ 186 (805)
T PLN02724 109 ALKLVGETFP-WSSESHFCYTLENHNSVLGIREYALEKGA-AAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKR 186 (805)
T ss_pred HHHHHHHHCC-CCCCCeEEEeeccccchHHHHHHHHHcCC-eEEeccchhccccccccccccccchhhhhhhhhhhhccc
Confidence 9999987653 5789999998766666554443 3477 7777665211 1111222 33443321 0
Q ss_pred --CCCCcEEEEcccCCCCcHH-----HHHHHhhcC--------eEEEeeCC
Q psy6266 153 --APDNSVIILHACAHNPTAQ-----QVAHMVDKH--------HVYLLRSG 188 (218)
Q Consensus 153 --~~~~~~iil~~~p~NPTG~-----~l~~l~~~~--------~i~ii~D~ 188 (218)
..+++.++..+--+|-||. .+..+++.+ +++++.|+
T Consensus 187 ~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDa 237 (805)
T PLN02724 187 EDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDA 237 (805)
T ss_pred cccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeeh
Confidence 0134456666678999998 232333322 36788995
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0094 Score=53.59 Aligned_cols=179 Identities=13% Similarity=0.120 Sum_probs=89.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc---CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE---YLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~---Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+. ........+|-+.+++..-+ ..+++
T Consensus 40 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~a~~~q~~~--~~~~~~~~~~~~~~~~la~~L~~~~~~-------~~~~v-- 106 (433)
T PRK08117 40 VDGKEYLDFTSGIAVANVG--HRHPKVVQAIKEQADK--LMHGPSGVIYYESILKLAEELAEITPG-------GLDCF-- 106 (433)
T ss_pred CCCCEEEECCcchhhccCC--CCCHHHHHHHHHHHHh--ccCccccccCCHHHHHHHHHHHHhCCC-------CCCEE--
Confidence 4577777777664333344 4567788887665543 1111 11223334444444443211 11333
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcc-------------eeEeccCCcC--cc-----
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEA-------------REYRYWNPEK--RA----- 140 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~-------------~~~~~~~~~~--~~----- 140 (218)
.-+.+|++|...++.+.+.+..-+.|+..+-+|-........+..+.. ..+|...... .+
T Consensus 107 ~f~~SGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (433)
T PRK08117 107 FFSNSGAEAIEGALKLAKHVTKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEV 186 (433)
T ss_pred EEeCcHHHHHHHHHHHHHHhcCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhH
Confidence 467788888888877543332235677777777553321111111001 1111100000 00
Q ss_pred ---ccHHHHHHHHhcC--CCC-cEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 141 ---VDFTGMYEDLVNA--PDN-SVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 141 ---~d~~~~~~~l~~~--~~~-~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
.+++.+++.+++. ..+ ..+++-+-..+ |.+. +|.++|++|++.+|.| |+|.||..
T Consensus 187 ~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~D--Ev~tG~gr 255 (433)
T PRK08117 187 CFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIFD--EVQTGFGR 255 (433)
T ss_pred HHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--cchhccCc
Confidence 1445555555431 112 22333221111 2232 8999999999999999 99998743
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=56.40 Aligned_cols=147 Identities=18% Similarity=0.214 Sum_probs=93.1
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcC---CCC------cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLP---VLG------LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAE 95 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~---~~G------~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~ 95 (218)
.+.+.|++|.-..+..+ -..+|.- ..| ++.|...-++.+|+ ... -+ ++-.+|++|-..++.
T Consensus 37 ~~S~aV~~A~gS~ltnK-YAEGyPgkRyYgGce~VD~vE~laierak~LFg-a~~-----an---VQPhSGs~AN~av~~ 106 (413)
T COG0112 37 FTSPAVMEAQGSDLTNK-YAEGYPGKRYYGGCEYVDEVEELAIERAKKLFG-AEY-----AN---VQPHSGSQANQAVYL 106 (413)
T ss_pred cCCHHHHHHHhhhhhhc-cccCCCCccccCCCeeHHHHHHHHHHHHHHHhC-CCc-----cc---cCCCCchHHHHHHHH
Confidence 46888998876554321 1112211 122 56777777888888 432 12 366778888888887
Q ss_pred HHHHhcCCCeEEecCCCchhHHHHH---HHhC--CCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc--cCCCC
Q psy6266 96 FLHRILNYTTFYYSKPTWENHRLVF---LNAG--FTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA--CAHNP 168 (218)
Q Consensus 96 ~l~~l~~gd~V~i~~P~y~~y~~~~---~~~g--~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~--~p~NP 168 (218)
+| +.|||+|+-.+-..+.|..-- ...| . +.+.|+. +.++..+|++.+++...+.. +++++.- .+.-|
T Consensus 107 Al--l~pGDtimgm~l~~GGHltHg~~v~~sG~~~-~~v~Y~v-d~et~~IDyD~~~k~a~e~k--PK~ii~G~SaY~r~ 180 (413)
T COG0112 107 AL--LQPGDTIMGLDLSHGGHLTHGSPVNFSGKLF-NVVSYGV-DPETGLIDYDEVEKLAKEVK--PKLIIAGGSAYSRP 180 (413)
T ss_pred HH--cCCCCeEecccCCCCCcccCCCCCCccceeE-EeEeccc-ccccCccCHHHHHHHHHHhC--CCEEEECccccccc
Confidence 77 789999999998888876311 1112 2 4555555 34567789999999887643 3444421 11111
Q ss_pred cHH-HHHHHhhcCeEEEeeC
Q psy6266 169 TAQ-QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 169 TG~-~l~~l~~~~~i~ii~D 187 (218)
--. ++.++|.+-+-|++.|
T Consensus 181 id~~~~reIad~VGA~L~~D 200 (413)
T COG0112 181 IDFKRFREIADEVGAYLMVD 200 (413)
T ss_pred cCHHHHHHHHHHhCceEEeh
Confidence 111 7889999999999999
|
|
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.01 Score=56.47 Aligned_cols=126 Identities=6% Similarity=0.032 Sum_probs=84.5
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcc
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEA 128 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~ 128 (218)
...|...=-|..+..+|+ . ++ .-++|.|+|.+..++++++ +.+||.|+++.=+.=+-...+.+.|+ +|
T Consensus 192 ~~~G~i~eAe~~AA~~fg-A-------d~-tyfvvNGTS~~n~av~~a~--~~~Gd~VLvdRN~HKSv~haLilsga-~P 259 (714)
T PRK15400 192 DHSGPHKEAEEYIARVFN-A-------DR-SYMVTNGTSTANKIVGMYS--APAGSTVLIDRNCHKSLTHLMMMSDV-TP 259 (714)
T ss_pred CCChHHHHHHHHHHHHhC-C-------Cc-EEEEeCchHHHHHHHHHHh--cCCCCEEEeecccHHHHHHHHHHcCC-eE
Confidence 345655555555566666 2 22 2469999999999988876 67999999999997776677888999 88
Q ss_pred eeEeccCCcCccc----c-----HHHHHHHHhcCCCCc---EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCcee
Q psy6266 129 REYRYWNPEKRAV----D-----FTGMYEDLVNAPDNS---VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRIN 191 (218)
Q Consensus 129 ~~~~~~~~~~~~~----d-----~~~~~~~l~~~~~~~---~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~ 191 (218)
++++... +..++ + .+.+++.|++.+..+ .+++.+ | +--|. +|++++.+++ |+.| ++
T Consensus 260 VYl~P~r-n~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~-p-TYdG~~yd~~~I~~~~~~~~--ilvD--EA 332 (714)
T PRK15400 260 IYFRPTR-NAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITN-S-TYDGLLYNTDFIKKTLDVKS--IHFD--SA 332 (714)
T ss_pred EEecccc-cccCCccCCCccccCHHHHHHHHHhCccccCccEEEEEC-C-CCccEecCHHHHHHHhCCCC--EEEE--cc
Confidence 8875321 12222 3 788999997653212 344432 2 34454 7888887776 6889 65
Q ss_pred ec
Q psy6266 192 MC 193 (218)
Q Consensus 192 y~ 193 (218)
..
T Consensus 333 wg 334 (714)
T PRK15400 333 WV 334 (714)
T ss_pred ch
Confidence 54
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0037 Score=57.04 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=77.9
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcC------------------------------
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILN------------------------------ 102 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~------------------------------ 102 (218)
++.+...-++.+|+ ... -+ ++-.+|+.|...++.++ +.|
T Consensus 96 ie~l~~~ra~~lf~-a~~-----an---vqp~Sg~~An~~v~~al--l~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~ 164 (493)
T PRK13580 96 VEWEAAEHAKELFG-AEH-----AY---VQPHSGADANLVAFWAI--LAHKVESPALEKLGAKTVNDLTEEDWEALRAEL 164 (493)
T ss_pred HHHHHHHHHHHHhC-CCc-----cc---ccCCCcHHHHHHHHHHH--hcccccCcchhccccccccccchhhhhhhhccC
Confidence 34555555666776 321 12 37788888888888877 545
Q ss_pred -CCeEEecCCCchhHHHH-----HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH----H
Q psy6266 103 -YTTFYYSKPTWENHRLV-----FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ----Q 172 (218)
Q Consensus 103 -gd~V~i~~P~y~~y~~~-----~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~----~ 172 (218)
||+|+-.++.-+.|... +..... +.+.|++. .+...+|++.+++.+... ++.+++.. .+|-++. +
T Consensus 165 ~gd~i~~l~l~~GGHlthg~~~n~~~~~~-~~~~y~vd-~~~g~iD~d~l~~~~~~~--~plvii~g-~S~~~~~~dl~~ 239 (493)
T PRK13580 165 GNQRLLGMSLDSGGHLTHGFRPNISGKMF-HQRSYGVD-PDTGLLDYDEIAALAREF--KPLILVAG-YSAYPRRVNFAK 239 (493)
T ss_pred CCCEEEeecCCCCCeeecCcccchhhhee-eeEecccC-cccCccCHHHHHHHHhhc--CCEEEEeC-ccccCCCcCHHH
Confidence 79999998887666321 111123 45556553 344578999999988653 34444433 3333444 8
Q ss_pred HHHHhhcCeEEEeeCC
Q psy6266 173 VAHMVDKHHVYLLRSG 188 (218)
Q Consensus 173 l~~l~~~~~i~ii~D~ 188 (218)
+.++|++++.+++.|+
T Consensus 240 i~eia~~~gA~L~VD~ 255 (493)
T PRK13580 240 LREIADEVGAVLMVDM 255 (493)
T ss_pred HHHHHHHcCCEEEEEC
Confidence 9999999999999994
|
|
| >KOG1368|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.018 Score=49.09 Aligned_cols=167 Identities=13% Similarity=0.091 Sum_probs=102.6
Q ss_pred CchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCe
Q psy6266 26 VLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTT 105 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~ 105 (218)
|.+.+++|+..+.- +..-|....-.-.|-+..|+. +| +. -..++++|.+|-+-.+. . ..-.+|-+
T Consensus 34 PTdeMr~am~eA~v---gDdVyGeD~tt~rLE~~vA~l-~G-KE--------AgLFv~SGTmgNllaIm-~-Hc~~rg~e 98 (384)
T KOG1368|consen 34 PTDEMRRAMAEASV---GDDVYGEDPTTNRLEQRVAEL-FG-KE--------AGLFVPSGTMGNLLAIM-V-HCHQRGSE 98 (384)
T ss_pred ChHHHHHHHhhccc---CcccccCCccHHHHHHHHHHH-hC-cc--------ceeeecccccccHHHHH-H-HhcCCCce
Confidence 45567777655442 223366666667787777755 44 31 23457777666543332 2 21348999
Q ss_pred EEecCCCch-hHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-----CCCcEEEEcccCCCCcHH------
Q psy6266 106 FYYSKPTWE-NHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-----PDNSVIILHACAHNPTAQ------ 171 (218)
Q Consensus 106 V~i~~P~y~-~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-----~~~~~iil~~~p~NPTG~------ 171 (218)
|++-+-+.- .|+ .+....|+ .+..+. .+++..++++.++++++.. -+.+.++..-+-||-||-
T Consensus 99 ii~gd~~HI~~~E~gg~s~l~gv-~~~tv~--~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle 175 (384)
T KOG1368|consen 99 IIVGDRAHIHRYEQGGISQLAGV-HVRTVK--NENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLE 175 (384)
T ss_pred EEeccchheeehhccChhhhccc-eeEeee--eCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHH
Confidence 999876522 122 23344455 455543 4556688999999999732 233555655567888883
Q ss_pred ---HHHHHhhcCeEEEeeCCceeeccCCC--CCHHHHHHHHHHH
Q psy6266 172 ---QVAHMVDKHHVYLLRSGRINMCGLTT--QNLDHVAQAIHDA 210 (218)
Q Consensus 172 ---~l~~l~~~~~i~ii~D~r~~y~~l~~--~ni~~~~~a~~~~ 210 (218)
.+.+||++|++-+-.||.-+|..-+. -.+.++|++++-+
T Consensus 176 ~~~~v~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSV 219 (384)
T KOG1368|consen 176 ELDRVKALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSV 219 (384)
T ss_pred HHHHHHHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhh
Confidence 78899999999999999444432222 2577888877655
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.025 Score=51.25 Aligned_cols=177 Identities=16% Similarity=0.103 Sum_probs=93.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...+|+.-|.-...-| ...|.|.+|.++.++.......|.......+|-+.+++..-+ ..+++ +-+
T Consensus 72 ~dG~~ylD~~~g~~~~~lG--h~hp~v~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~-------~~~~v--~f~ 140 (442)
T TIGR03372 72 TQGNEFIDCLGGFGIFNVG--HRNPNVIAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPG-------KLKYS--FFC 140 (442)
T ss_pred CCCCEEEECCccHHhhhcC--CCCHHHHHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCC-------CcCEE--EEe
Confidence 4577777776552212334 446777777666554312223455444444555555443211 11333 467
Q ss_pred ccChhHHHHHHHHHHHhc---CCCeEEecCCCchhHHHHHHHhCCCccee----EeccCCcCc---cccHHHHHHHHhcC
Q psy6266 84 LSGTGALRVGAEFLHRIL---NYTTFYYSKPTWENHRLVFLNAGFTEARE----YRYWNPEKR---AVDFTGMYEDLVNA 153 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~---~gd~V~i~~P~y~~y~~~~~~~g~~~~~~----~~~~~~~~~---~~d~~~~~~~l~~~ 153 (218)
.+|++|...++++.+... ....|+...-+|-........... ++.. .|+. +... -.|.+.+++.+++.
T Consensus 141 ~SGsEA~e~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~t~-~~~~~~~~~p~~-~~~~~~p~~d~~~~~~~l~~~ 218 (442)
T TIGR03372 141 NSGTESVEAALKLAKAYQSPRGKFTFIAASGAFHGKSLGALSATA-KPAFRKPFMPLL-PGFHHVAFGDIEAMLKALNEC 218 (442)
T ss_pred CCchHHHHHHHHHHHHHHhhcCCcEEEEECCCccCCCHHHhhccC-CcccCCCCCCCC-CCCEEeCCCCHHHHHHHHHHH
Confidence 889999988888654331 235788888877765432222222 1111 1110 1000 11566666666431
Q ss_pred ---CCC-cEEEEcccC------CCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 154 ---PDN-SVIILHACA------HNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 154 ---~~~-~~iil~~~p------~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..+ ..+++-+-. .-|.|. .+.++|++|++.+|.| |+..|+
T Consensus 219 ~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~D--EV~tG~ 270 (442)
T TIGR03372 219 KKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILD--EVQTGM 270 (442)
T ss_pred hcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe--ecccCC
Confidence 122 222322211 124444 7999999999999999 998875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0018 Score=56.03 Aligned_cols=139 Identities=13% Similarity=0.126 Sum_probs=75.1
Q ss_pred ccCcC--CCC---cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh--c--CCCeEEecCCCchh
Q psy6266 45 HEYLP--VLG---LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI--L--NYTTFYYSKPTWEN 115 (218)
Q Consensus 45 ~~Y~~--~~G---~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l--~--~gd~V~i~~P~y~~ 115 (218)
..|.. ..+ .++|.++|.++-.- .+ ....+++- +++..|++|.+..++.+|.-- + +--.|+...|+|+.
T Consensus 32 MSY~~~~~~~~f~s~eL~~~Ir~LH~~-VG-NAvt~gr~-IV~GtGsTQL~~AalyALSp~~~~~~~p~~VVa~aPYY~~ 108 (363)
T PF04864_consen 32 MSYFSDSSNGWFISPELERQIRRLHRV-VG-NAVTDGRY-IVFGTGSTQLFNAALYALSPNASPSSSPASVVAAAPYYSS 108 (363)
T ss_dssp -SSSS-TTSSTTS-HHHHHHHHHHHHH-H--SB--TTSE-EEEECHHHHHHHHHHHHHCHHT-TTSSSEEEEE-SS--CH
T ss_pred ceeEEecCCceeccHHHHHHHHHHHHH-hc-cccccCcE-EEEcCCHHHHHHHHHHhcCCCCCCCCCCceeEecCCCccc
Confidence 45766 333 47888888776532 22 23556664 468899999999888877433 1 13578999999999
Q ss_pred HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHHHHHHHhhcCeEEEeeCCceeeccC
Q psy6266 116 HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 116 y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
|..+.... +...+. |..+.. .+. ....+.+.|=++.+||||.|.--..+++.-..-+|.| .+|-.=
T Consensus 109 Y~~qt~~f---~s~~y~-w~Gda~--~~~------~~~~~~~~IElVTSPNNPDG~lr~~V~~g~~~k~I~D--~AYYWP 174 (363)
T PF04864_consen 109 YPEQTDFF---DSRLYK-WAGDAS--NFK------NSDNPSPYIELVTSPNNPDGQLREAVLNGSSGKVIHD--LAYYWP 174 (363)
T ss_dssp HHHHCCCT----BTTEE-EEEECC--CGT------T-S-CCGEEEEEESS-TTT------SSTTTEEEEEEE---TT-ST
T ss_pred hHHHHHhc---cccCcc-ccccHH--hhc------cCCCCCCeEEEEeCCCCCcccccchhcCCCCcceeee--eeeecc
Confidence 99765543 233332 222211 121 1112456777778999999984344556777778899 888755
Q ss_pred CCCCH
Q psy6266 196 TTQNL 200 (218)
Q Consensus 196 ~~~ni 200 (218)
-|..|
T Consensus 175 hyTpI 179 (363)
T PF04864_consen 175 HYTPI 179 (363)
T ss_dssp TTS--
T ss_pred ccccc
Confidence 55543
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.039 Score=49.61 Aligned_cols=175 Identities=13% Similarity=0.028 Sum_probs=92.0
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+.+.++.-..+|-+.+.+..- ..+++ .-+
T Consensus 50 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~~~~~~~~~~~~la~~l~~~~p--------~~~~v--~f~ 115 (428)
T PRK12389 50 VDGNKYIDYLAAYGPIITG--HAHPHITKAITEAAEN--GVLYGTPTELEIEFAKMLKEAIP--------SLEKV--RFV 115 (428)
T ss_pred CCCCEEEEccccccccccC--CCCHHHHHHHHHHHHh--CCccCCCCHHHHHHHHHHHHhCC--------CCcEE--EEe
Confidence 4566777776554323344 3467778776665543 23323344333444444433221 12344 467
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH-HHHHhCCCcceeE-----eccC----CcCc---cccHHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL-VFLNAGFTEAREY-----RYWN----PEKR---AVDFTGMYEDL 150 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~-~~~~~g~~~~~~~-----~~~~----~~~~---~~d~~~~~~~l 150 (218)
.+|++|...++++.+....-..|+...-+|-.... .+...|. .+... +-+. ++.. -.|.+.+++.+
T Consensus 116 ~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l 194 (428)
T PRK12389 116 NSGTEAVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGS-GPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEAL 194 (428)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCChHHHHHhcCC-cccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHH
Confidence 88899988888865443223566666666665432 2222221 11100 0000 0000 11677888777
Q ss_pred hcCCCC-cEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 151 VNAPDN-SVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 151 ~~~~~~-~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.+.... ..+++-+-..+ |.|. +|.++|+++++.+|.| |+..|+
T Consensus 195 ~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~D--EV~tG~ 246 (428)
T PRK12389 195 DKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYD--EVITAF 246 (428)
T ss_pred HhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE--cccccc
Confidence 643222 22333221111 3343 8999999999999999 998887
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.016 Score=55.29 Aligned_cols=127 Identities=9% Similarity=0.059 Sum_probs=80.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH-HHHHhCCCc
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL-VFLNAGFTE 127 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~-~~~~~g~~~ 127 (218)
...|...=-|..+..+|+ . ++ .-++|.|+|.+..++.+++ +.|||.|+++.=+.=+-.. .+.+.|+ +
T Consensus 171 ~~eG~i~eAq~~AA~~fg-A-------d~-tyFlvNGTS~gn~a~i~a~--~~~Gd~VLvdRN~HKSv~hgaLiLsGa-~ 238 (720)
T PRK13578 171 IHEGAAKDAQKHAAKVFN-A-------DK-TYFVLNGTSASNKVVTNAL--LTPGDLVLFDRNNHKSNHHGALIQAGA-T 238 (720)
T ss_pred CCChHHHHHHHHHHHHhC-C-------Cc-eEEEeCChhHHHHHHHHHh--cCCCCEEEeecccHHHHHHHHHHHcCC-e
Confidence 345655445555666666 2 22 2469999999999988876 6799999999999666444 3678899 8
Q ss_pred ceeEeccCCcCccc----cH-----HHHHHHHhcC-CC-------CcEEEEcccCCCCcHH-----HHHHH-hhcCeEEE
Q psy6266 128 AREYRYWNPEKRAV----DF-----TGMYEDLVNA-PD-------NSVIILHACAHNPTAQ-----QVAHM-VDKHHVYL 184 (218)
Q Consensus 128 ~~~~~~~~~~~~~~----d~-----~~~~~~l~~~-~~-------~~~iil~~~p~NPTG~-----~l~~l-~~~~~i~i 184 (218)
|+++.-.. +..++ +. +.++++|++. +. ...+++. + .+--|. +|+++ +..++ +|
T Consensus 239 PVYl~P~~-n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit-~-pTYdG~~ydi~~I~~~~~h~~~-~l 314 (720)
T PRK13578 239 PVYLETAR-NPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQ-L-GTYDGTIYNARQVVDKIGHLCD-YI 314 (720)
T ss_pred EEEeeccc-cccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEE-C-CCCcceeecHHHHHHHhhccCC-cE
Confidence 88864321 12322 43 4488888764 21 1233432 2 223354 67777 56677 99
Q ss_pred eeCCceeec
Q psy6266 185 LRSGRINMC 193 (218)
Q Consensus 185 i~D~r~~y~ 193 (218)
+.| |+..
T Consensus 315 lvD--EAhg 321 (720)
T PRK13578 315 LFD--SAWV 321 (720)
T ss_pred EEe--Ccch
Confidence 999 5543
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.037 Score=49.70 Aligned_cols=183 Identities=15% Similarity=0.130 Sum_probs=91.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc-CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE-YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~-Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| ...|.|.+|.++.++.....+. +....-..+|-+.+++.... .. .. .+++ .+.
T Consensus 36 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~-~~--~~-~~~~-~f~ 108 (425)
T PRK09264 36 EDGKEYIDFFAGAGALNYG--HNNPVLKQALIDYLQRDGITHGLDMHTTAKREFLETFEETILK-PR--GL-DYKV-QFT 108 (425)
T ss_pred CCCCEeeecccchhhccCC--CCCHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcC-Cc--CC-CceE-EEe
Confidence 4577778876664333445 4567777776655432111111 11122223344444443211 10 01 1233 234
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh-CC-----------CcceeEeccCCcCc-cccHHHHHHH
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA-GF-----------TEAREYRYWNPEKR-AVDFTGMYED 149 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~-g~-----------~~~~~~~~~~~~~~-~~d~~~~~~~ 149 (218)
+.+|++|...++++.+....-+.|+...-+|-......-.. |- .....+|+...... .-|++.+++.
T Consensus 109 ~~sGseA~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~ 188 (425)
T PRK09264 109 GPTGTNAVEAALKLARKVTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKL 188 (425)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHH
Confidence 57899999988886544422356777777776654222211 10 01122222100000 0256667777
Q ss_pred HhcCC---CC-cEEEEcccCCC-----C-cHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 150 LVNAP---DN-SVIILHACAHN-----P-TAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 150 l~~~~---~~-~~iil~~~p~N-----P-TG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.+.. +. ..+++=+-..+ | -+. +|.++|++|++++|.| |++.|+
T Consensus 189 l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D--EV~tG~ 244 (425)
T PRK09264 189 LEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVD--DIQAGC 244 (425)
T ss_pred HHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEe--chhhCC
Confidence 75421 11 22333221121 2 233 8999999999999999 999876
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.049 Score=48.75 Aligned_cols=176 Identities=13% Similarity=0.041 Sum_probs=98.8
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC-CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP-VLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|..-||+..|-=..--| ..+|.|++|.++.+++ +. .|.. +.---+|-+.+.+..- .-|.|. .+
T Consensus 51 DGn~YIDy~~~~Gp~ilG--H~~p~V~~Av~~~l~~--G~-~fg~Pte~Ei~~Aell~~~~p--------~~e~vr--fv 115 (432)
T COG0001 51 DGNEYIDYVLGWGPLILG--HAHPAVVEAVQEQLER--GL-SFGAPTELEVELAELLIERVP--------SIEKVR--FV 115 (432)
T ss_pred CCCEeeehhccCcccccC--CCCHHHHHHHHHHHHh--cC-CCCCCCHHHHHHHHHHHHhcC--------cccEEE--Ee
Confidence 355556655552111122 4577899998887754 23 3443 3332333333333221 125554 66
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH-HHHhCCCccee--------Eecc-CCcCcc---ccHHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-FLNAGFTEARE--------YRYW-NPEKRA---VDFTGMYEDL 150 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-~~~~g~~~~~~--------~~~~-~~~~~~---~d~~~~~~~l 150 (218)
..||+|...+..+-+..-.=|.|+..+=+|-.+... +..+|- .+-. +|-- ..+.-. .|++.+++.+
T Consensus 116 nSGTEAtmsAiRlARa~TgR~kIikF~G~YHG~~D~~lv~ags-g~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~ 194 (432)
T COG0001 116 NSGTEATMSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGS-GAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAF 194 (432)
T ss_pred cchhHHHHHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCc-CcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHH
Confidence 777888777766544333457888888888777653 333331 1110 1100 000000 1889999988
Q ss_pred hcC-CCCcEEEEcccCCC-----CcHH---HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 151 VNA-PDNSVIILHACAHN-----PTAQ---QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 151 ~~~-~~~~~iil~~~p~N-----PTG~---~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++. .+-..+|+-+-+.| |.-. .|.++|+++++.+|.| |+..+|-..
T Consensus 195 ~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~D--EViTGFR~~ 249 (432)
T COG0001 195 EEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFD--EVITGFRVA 249 (432)
T ss_pred HHcCCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEe--cchhhcccC
Confidence 765 23345566566677 3322 7999999999999999 777766443
|
|
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.017 Score=51.46 Aligned_cols=132 Identities=13% Similarity=0.112 Sum_probs=91.8
Q ss_pred CccCcC---CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh--cCC----CeEEecCCCch
Q psy6266 44 NHEYLP---VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI--LNY----TTFYYSKPTWE 114 (218)
Q Consensus 44 ~~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l--~~g----d~V~i~~P~y~ 114 (218)
.|-|.| .+|..++...+.+|+.. -.+- +.| +++-..|.++-+..+.+++.. ..| ++|+||+-..+
T Consensus 95 iHP~~pe~~vqG~l~li~~Lq~~L~~-ITG~----Dav-sLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHG 168 (496)
T COG1003 95 IHPFQPEEQVQGYLELIYELQEWLKE-ITGM----DAV-SLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHG 168 (496)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHH-hcCC----cee-eccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccC
Confidence 466776 57888888888888865 3221 334 466666666666665555442 123 68999999999
Q ss_pred hHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH------HHHHHhhcCeEEEeeCC
Q psy6266 115 NHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ------QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 115 ~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~------~l~~l~~~~~i~ii~D~ 188 (218)
.-.....++|. +++.+++. +...+|++.+++.+.+ +...+++.+| |--|. +|+++..+++-.+--||
T Consensus 169 TNPASAam~G~-~VV~V~~~--~~G~VDlddLk~k~~~---~~AalMiTnP-sT~GvFE~~I~ei~~ivH~~Gg~vY~DG 241 (496)
T COG1003 169 TNPASAAMAGF-KVVVVKCD--ENGNVDLDDLRAKAED---NLAALMITNP-STLGVFEEDIREICEIVHEAGGQVYYDG 241 (496)
T ss_pred CChhhHhhcCc-eEEEEecC--CCCCccHHHHHHHhcc---ceeEEEeccC-cccccchhhHHHHHHHHHHcCCEEEecC
Confidence 99999999999 99999883 3457899999998863 3333333333 22344 67777788998999998
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.11 Score=48.77 Aligned_cols=87 Identities=7% Similarity=0.040 Sum_probs=60.8
Q ss_pred eEEecCCCchhHHHHHHHhCCC--cceeEeccCCcCccccHHHHHHHHhcC--CC-CcEEEEcccCCCCcHH-----HHH
Q psy6266 105 TFYYSKPTWENHRLVFLNAGFT--EAREYRYWNPEKRAVDFTGMYEDLVNA--PD-NSVIILHACAHNPTAQ-----QVA 174 (218)
Q Consensus 105 ~V~i~~P~y~~y~~~~~~~g~~--~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~-~~~iil~~~p~NPTG~-----~l~ 174 (218)
.++++.-...+........|+- +++.+|. .+...+|.+.+++.|++. .. ..+.++-....-.||. +|+
T Consensus 224 ~vl~s~~aHyS~~KAa~ilGlG~~~vv~Vpv--D~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~GaiDpl~eI~ 301 (608)
T TIGR03811 224 KWLVPQTKHYSWLKAADIIGIGLDQVIPVPV--DSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEEGAVDGIDKIV 301 (608)
T ss_pred EEEECCCccHHHHHHHHHcCCCcccEEEeec--CCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCCcccCCHHHHH
Confidence 4777777677777777778871 3677877 335689999999988753 12 2233443455566777 788
Q ss_pred HHh---hcCeE--EEeeCCceeeccC
Q psy6266 175 HMV---DKHHV--YLLRSGRINMCGL 195 (218)
Q Consensus 175 ~l~---~~~~i--~ii~D~r~~y~~l 195 (218)
++| +++++ |+..| -+|.|+
T Consensus 302 ~l~~~~~~~gl~~~lHVD--AAyGG~ 325 (608)
T TIGR03811 302 ALRNKLMKEGIYFYLHVD--AAYGGY 325 (608)
T ss_pred HHHHHHHHcCCceeEeee--ccccch
Confidence 887 66887 69999 899985
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.051 Score=49.42 Aligned_cols=181 Identities=14% Similarity=0.108 Sum_probs=92.6
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCC-cHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLG-LESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G-~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++. ..+ +....+ .-+.+..+++++.. .- + -.-+++ .
T Consensus 46 D~dG~~ylD~~sg~~~~~lG--h~~p~v~~Av~~q~~~--~~~-~~~~~~~~~~~~~~lAe~L~~-~~-p-~~~~~v--~ 115 (461)
T PRK07482 46 DAQGRRYIDAFAGLYCVNVG--YGRTEVAEAIAEQAKE--LAY-YHTYVGHGTEASITLSKRIID-RA-P-AGMSKV--Y 115 (461)
T ss_pred ECCCCEEEEcccchhhhcCC--CCCHHHHHHHHHHHHh--cCc-cccccccCCHHHHHHHHHHHH-hC-C-CCcCEE--E
Confidence 45688888888776544555 4477788887766543 111 111111 12333445555532 11 0 012454 4
Q ss_pred EeccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHHHHHHhCCC------------cceeE--eccCC----c
Q psy6266 82 QTLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRLVFLNAGFT------------EAREY--RYWNP----E 137 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~~~~~~g~~------------~~~~~--~~~~~----~ 137 (218)
-+.+|++|...++++.+... ++ .+|+...-+|-............ .+..+ |.+.. .
T Consensus 116 f~~sGSEAve~AlKlAr~~~~~~g~~~r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 195 (461)
T PRK07482 116 YGLSGSDANETQIKLVWYYNNVLGRPEKKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAG 195 (461)
T ss_pred EeCchHHHHHHHHHHHHHHHHhcCCCCCceEEEecCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccC
Confidence 67889999998888654321 22 46777777776643211111110 01111 11100 0
Q ss_pred -C---c-cccHHHHHHHHhcC-CCC-cEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 138 -K---R-AVDFTGMYEDLVNA-PDN-SVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 138 -~---~-~~d~~~~~~~l~~~-~~~-~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
. . ..+.+.+++.+.+. ... ..+++-+-..+ |.|. +|.++|++|++.+|.| |+..||
T Consensus 196 ~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI~D--EV~tGf 266 (461)
T PRK07482 196 MSEEQFSAYCADELEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIAD--EVVTGF 266 (461)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEe--ccccCC
Confidence 0 0 00345566666422 122 23333221111 3333 8999999999999999 999987
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.031 Score=53.24 Aligned_cols=124 Identities=5% Similarity=-0.044 Sum_probs=80.0
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcce
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAR 129 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~ 129 (218)
..|...=-|..+..+|+ . ++ .-++|.|+|.+..++.+++ +.|||.|+++.=+.=+-...+.+.|+ +|+
T Consensus 193 ~~G~i~eAe~~aA~~fg-A-------d~-tyfvvNGTS~~n~av~~a~--~~~Gd~VLvdRN~HKSv~~aLilsga-~PV 260 (713)
T PRK15399 193 HTGPHLEAEEYIARTFG-A-------EQ-SYIVTNGTSTSNKIVGMYA--APAGSTLLIDRNCHKSLAHLLMMSDV-VPI 260 (713)
T ss_pred CChHHHHHHHHHHHHhC-C-------Cc-EEEEeCChHHHHHHHHHHh--cCCCCEEEeecccHHHHHHHHHHcCC-eeE
Confidence 45554444555556665 2 22 2469999999999988876 78999999999997776678889999 888
Q ss_pred eEeccCCcCcc----ccH-----HHHHHHHhcCCCC---cEEEEcccCCCCcHH-----HHHHHhhcCeEEE-eeCCcee
Q psy6266 130 EYRYWNPEKRA----VDF-----TGMYEDLVNAPDN---SVIILHACAHNPTAQ-----QVAHMVDKHHVYL-LRSGRIN 191 (218)
Q Consensus 130 ~~~~~~~~~~~----~d~-----~~~~~~l~~~~~~---~~iil~~~p~NPTG~-----~l~~l~~~~~i~i-i~D~r~~ 191 (218)
+++... +..+ ++. +.+++.|++.+.. ..+++. +| +.-|. +|++.+ ++.+ +.| ++
T Consensus 261 Yl~P~~-n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit-~p-TYdGi~yd~~~I~~~~---g~~~ilvD--EA 332 (713)
T PRK15399 261 WLKPTR-NALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVIT-NS-TYDGLLYNTDWIKQTL---DVPSIHFD--SA 332 (713)
T ss_pred Eecccc-cccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEE-CC-CCCceeeCHHHHHHHh---CCCEEEEe--cc
Confidence 874321 1222 233 8888888765321 234442 22 34465 566665 4544 699 55
Q ss_pred ec
Q psy6266 192 MC 193 (218)
Q Consensus 192 y~ 193 (218)
..
T Consensus 333 hg 334 (713)
T PRK15399 333 WV 334 (713)
T ss_pred ch
Confidence 44
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.068 Score=48.39 Aligned_cols=101 Identities=17% Similarity=0.066 Sum_probs=53.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCc--cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNH--EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. .... .+.+..-..+|-+.+++..-+ ...++| .
T Consensus 39 ~dG~~ylD~~~g~~~~~lG--H~~p~v~~Ai~~ql~~-~~~~~~~~~~~~~~~~lae~L~~~~p~------~~~~~v--~ 107 (445)
T PRK08593 39 VDGKTYIDLLASASSQNVG--HAPPRVVEAIKAQADK-FIHYTPAYMYHEPLVRLAKKLCELAPG------DFEKRV--T 107 (445)
T ss_pred CCCCEEEECCccHHhhcCC--CCCHHHHHHHHHHHHh-ccCccccccCCHHHHHHHHHHHHhCCC------CCCCEE--E
Confidence 4577777875553323345 3467788776665543 1111 122232233344444433211 111344 4
Q ss_pred EeccChhHHHHHHHHHHHhcCC-CeEEecCCCchhH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENH 116 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y 116 (218)
-+.+|++|...++++.+.. .| ..|+..+-+|-..
T Consensus 108 f~~SGseA~e~AiklAr~~-tgr~~ii~~~~~YHG~ 142 (445)
T PRK08593 108 FGLSGSDANDGIIKFARAY-TGRPYIISFTNAYHGS 142 (445)
T ss_pred ECCchHHHHHHHHHHHHHh-hCCCeEEEECCCcCCC
Confidence 6788899988888764433 34 4566667666554
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.092 Score=47.99 Aligned_cols=179 Identities=12% Similarity=0.026 Sum_probs=92.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+...+. +....+++++.. .- +. .+++ .-+
T Consensus 96 ~dG~~yiD~~~g~g~~~lG--h~~p~v~~av~~ql~~--~~~~~~~~----~~~~~lAe~l~~-~~-p~--~~~v--~f~ 161 (474)
T PLN02482 96 VDGNEYIDYVGSWGPAIIG--HADDEVLAALAETMKK--GTSFGAPC----LLENVLAEMVID-AV-PS--VEMV--RFV 161 (474)
T ss_pred CCCCEEEEecccccccccC--CCCHHHHHHHHHHHhh--CCCCCCCC----HHHHHHHHHHHH-hC-CC--CCEE--EEe
Confidence 4577777876664323344 4467888887766643 23222233 233344555533 21 11 2454 467
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH-HHHHhCC-Cc----c--eeEecc-CCcCc---cccHHHHHHHHh
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL-VFLNAGF-TE----A--REYRYW-NPEKR---AVDFTGMYEDLV 151 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~-~~~~~g~-~~----~--~~~~~~-~~~~~---~~d~~~~~~~l~ 151 (218)
.+|++|...++.+-+....-+.|+...-+|-.+.. .....+. .. + ..+|.. ..+.. -.|++.+++.+.
T Consensus 162 ~SGsEA~e~AlklAR~~tgr~~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~ 241 (474)
T PLN02482 162 NSGTEACMGVLRLARAYTGREKIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFE 241 (474)
T ss_pred CChHHHHHHHHHHHHHhcCCCEEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHH
Confidence 88899988888765443223556666666655432 1111100 00 0 000000 00000 016777887776
Q ss_pred cCCCC-cEEEEcccCCC-----C-cHH--HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 152 NAPDN-SVIILHACAHN-----P-TAQ--QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 152 ~~~~~-~~iil~~~p~N-----P-TG~--~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.... ..+++-+-..| | .|. .|.++|++|++.+|.| |+..|+-.+
T Consensus 242 ~~~~~iAavI~Epv~g~~G~i~p~~~fl~~lr~lc~~~g~lLI~D--EV~tGfR~g 295 (474)
T PLN02482 242 ANKGEIAAVILEPVVGNSGFIVPKKEFLEGLREITKENGALLVFD--EVMTGFRIA 295 (474)
T ss_pred hCCCceEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCeecC
Confidence 43222 23333222222 2 343 7999999999999999 888887333
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0099 Score=51.97 Aligned_cols=108 Identities=14% Similarity=0.206 Sum_probs=58.8
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEec-CCCchhHHHHH----------HHhCCCcceeEeccCCcCccccHHHHHHHH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYS-KPTWENHRLVF----------LNAGFTEAREYRYWNPEKRAVDFTGMYEDL 150 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~-~P~y~~y~~~~----------~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l 150 (218)
+..+||+|+.+++..+ |.|||+.+.. -.-|-.-...+ +..|. +...+++. ++..+|++.+++++
T Consensus 77 q~vSGTHAi~~~Lfg~--LrpGD~ll~~tG~PYDTL~~VIG~~g~~~GSL~e~Gi-~Y~~v~L~--~dg~~D~~~i~~~~ 151 (403)
T PF06838_consen 77 QFVSGTHAIALALFGV--LRPGDELLSITGKPYDTLEEVIGIRGNGPGSLKEFGI-KYREVPLT--EDGTIDWEAIKKAL 151 (403)
T ss_dssp TS-SHHHHHHHHHHHH----TT-EEEESSSS--CCHHHHHTSSSSSSSSTGGGT--EEEE--B---TTSSB-HHHHHHHH
T ss_pred cccchHHHHHHHHHhc--CCCCCeEEEcCCCchhhHHHHhCCCCCCCCChHHhCc-eeEEEeec--CCCCcCHHHHHHhh
Confidence 5578999999988876 7899999853 23334344333 22333 44555553 34678999999999
Q ss_pred hcCCCCcEEEEcccC---CCCcHH--HHH---HHhhc--CeEEEeeCCceeeccCCCC
Q psy6266 151 VNAPDNSVIILHACA---HNPTAQ--QVA---HMVDK--HHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 151 ~~~~~~~~iil~~~p---~NPTG~--~l~---~l~~~--~~i~ii~D~r~~y~~l~~~ 198 (218)
+. +.+++++|=|. .-|+=. +|. +++|+ .+++++.| -+|.+|+-.
T Consensus 152 ~~--~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p~~iifVD--NCYGEFvE~ 205 (403)
T PF06838_consen 152 KP--NTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINPDVIIFVD--NCYGEFVET 205 (403)
T ss_dssp HT--TEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-TTSEEEEE---TTTTTTSS
T ss_pred cc--CceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCCCeEEEEe--CCcceeccc
Confidence 73 34466676433 111111 333 33333 68999999 999988654
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.072 Score=48.47 Aligned_cols=179 Identities=16% Similarity=0.122 Sum_probs=91.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++.......|.+.....+|.+.+++..-+ ..+++ .-+
T Consensus 79 ~dG~~ylD~~~g~~~~~lG--H~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~-------~~~~v--~f~ 147 (459)
T PRK11522 79 TQGQEFIDCLGGFGIFNVG--HRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPG-------KLKYS--FFC 147 (459)
T ss_pred CCCCEEEECCcCHHhhhcC--CCCHHHHHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCC-------CCCEE--EEe
Confidence 4566677776553222344 446778888666554311122344443334444444433211 11344 467
Q ss_pred ccChhHHHHHHHHHHHhcC--CC-eEEecCCCchhHHHHHHHhCCCcceeEecc--CCcCc---cccHHHHHHHHhcC--
Q psy6266 84 LSGTGALRVGAEFLHRILN--YT-TFYYSKPTWENHRLVFLNAGFTEAREYRYW--NPEKR---AVDFTGMYEDLVNA-- 153 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~--gd-~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~--~~~~~---~~d~~~~~~~l~~~-- 153 (218)
.+|++|...++++.+.... |+ .|+...-+|-.................++. .+... -.|.+.+++.+++.
T Consensus 148 ~SGsEAve~AlklAr~~t~~~gr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 227 (459)
T PRK11522 148 NSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKK 227 (459)
T ss_pred CCchHHHHHHHHHHHHHhccCCCcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhc
Confidence 8899999888886544321 33 577777777665432222222011111100 00000 11566677766531
Q ss_pred -CCC-cEEEEcccC------CCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 154 -PDN-SVIILHACA------HNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 154 -~~~-~~iil~~~p------~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..+ ..+++-+-. .-|.|. .+.++|++|++.+|.| |+..|+
T Consensus 228 ~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~D--EV~tG~ 277 (459)
T PRK11522 228 TGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILD--EVQTGM 277 (459)
T ss_pred cCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEec--cceecC
Confidence 112 222322111 124454 7999999999999999 998876
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.068 Score=48.58 Aligned_cols=180 Identities=10% Similarity=0.053 Sum_probs=89.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCC-cHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLG-LESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G-~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+ .....+ ..+.+..+++.+.. ... -..+++ .-
T Consensus 43 ~dG~~ylD~~~g~~~~~lG--h~~p~i~~Ai~~q~~~--~~~-~~~~~~~~~~~~~~lae~L~~-~~p--~~~~~v--~f 112 (459)
T PRK05965 43 ASGHQLLDAFAGLWCVNVG--YGQESIVEAAAEQMRE--LPY-ATGYFHFGSEPAIRLAAKLAE-RAP--GSLNHV--YF 112 (459)
T ss_pred CCCCEEEECcccHHhccCC--CCCHHHHHHHHHHHHh--cCC-cccccccCCHHHHHHHHHHHh-hCC--CCcCEE--EE
Confidence 4677788876664333445 3467788776665543 121 111101 11222334444432 110 112444 46
Q ss_pred eccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHHHHHHh-CC-----------CcceeEeccCC--cCcccc
Q psy6266 83 TLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRLVFLNA-GF-----------TEAREYRYWNP--EKRAVD 142 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~~~~~~-g~-----------~~~~~~~~~~~--~~~~~d 142 (218)
+.+|++|...++++.+... ++ ..|+...-+|-......... +. ..+..++.... .....|
T Consensus 113 ~~sGSEAve~AlKlAr~~~~~~g~~~r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (459)
T PRK05965 113 TLGGSDAVDSAVRFIRHYWNATGRPSKKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDD 192 (459)
T ss_pred eCChhHHHHHHHHHHHHHHHhcCCCCccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCC
Confidence 7889999998888654331 22 46888888876653211111 11 00111111000 000112
Q ss_pred --------HHHHHHHHhcCCCCc--EEEEcccC------CCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 143 --------FTGMYEDLVNAPDNS--VIILHACA------HNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 143 --------~~~~~~~l~~~~~~~--~iil~~~p------~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
++.+++.+.+..+.. .+|+-+-. .=|.+. .|.++|++|++.+|.| |+..||
T Consensus 193 ~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~D--EV~tGf 261 (459)
T PRK05965 193 PQAIIAASVAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVAD--EVITGF 261 (459)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhccC
Confidence 245566665322122 23332211 113343 7999999999999999 999987
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.03 Score=55.25 Aligned_cols=142 Identities=14% Similarity=0.124 Sum_probs=87.8
Q ss_pred eeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC-----CC----cHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 12 EIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV-----LG----LESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 12 l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-----~G----~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
++.|.|. ..+|+.|.+. +++.++..+.|+|. +| +.+|++.++++. | .+..++. .
T Consensus 81 ig~G~y~-----~~~P~vi~~~---i~~~~~~~t~ytPyQ~EisQG~Leal~~~Qt~la~Lt-G------~~~anaS--l 143 (954)
T PRK05367 81 IGQGYYG-----THTPPVILRN---ILENPAWYTAYTPYQPEISQGRLEALLNFQTMVADLT-G------LEIANAS--L 143 (954)
T ss_pred cCCCCCC-----CcCcHHHHHH---HHhCcchhhccCCCChHHHHHHHHHHHHHHHHHHHHH-C------CChhhcc--c
Confidence 5677651 2556666432 33333446778884 45 345666666654 3 3334443 6
Q ss_pred eccChhHHHHHHHHHHHhcCC--CeEEecCCCchhHHHHH----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 83 TLSGTGALRVGAEFLHRILNY--TTFYYSKPTWENHRLVF----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~g--d~V~i~~P~y~~y~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
+.+++.+...+++++. +.++ |+|++++-.||.+...+ +..|+ +++.++.. . |.+ . ...
T Consensus 144 ~d~aTAa~ea~~~a~~-~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~-ev~~~~~~-~-----d~~-------~-~~~ 207 (954)
T PRK05367 144 LDEATAAAEAMALAKR-VSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGI-EVVVGDAA-K-----ALD-------H-DDV 207 (954)
T ss_pred cccHHHHHHHHHHhhh-hccCCCCEEEEcCccCHHHHHHHHHHHHhCCC-EEEEecCc-c-----CCC-------c-ccE
Confidence 6777777776666653 4554 99999999999988654 44687 77777642 1 111 1 111
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
..+++++ .|-||. +|.+++++++++++.|.
T Consensus 208 ~~vlvq~--p~~~G~i~d~~~i~~~ah~~Gal~~vda 242 (954)
T PRK05367 208 FGVLLQY--PGTSGEVRDYTALIAAAHARGALVAVAA 242 (954)
T ss_pred EEEEEec--CCCCeeeccHHHHHHHHHHcCCEEEEEe
Confidence 2344443 467887 78899999999988883
|
|
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.074 Score=48.35 Aligned_cols=176 Identities=15% Similarity=0.034 Sum_probs=87.8
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc--CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE--YLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
-..|...||+. |.....-| ...|.|.+|.++.++. ..+. +.++ +.+..+++++.. ... -..+++
T Consensus 68 D~dG~~ylD~~-g~~~~~lG--h~~p~v~~Ai~~ql~~--~~~~~~~~~~----~~~~~lae~L~~-~~p--~~~~~v-- 133 (459)
T PRK06082 68 DVDGKKYMDFH-GNNVHQLG--YGHPHVIEKVKEQMAK--LPFSPRRFTN----ETAIECAEKLTE-IAG--GELNRV-- 133 (459)
T ss_pred ECCCCEEEEcc-cHhhcccC--CCCHHHHHHHHHHHHh--CCCccCccCC----HHHHHHHHHHHH-hCC--CCCCEE--
Confidence 34677788876 43222345 3466777776665543 1111 1222 233344444432 110 011344
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH-HHHHhCCCc------------ceeEeccCCcC--c-cc---
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL-VFLNAGFTE------------AREYRYWNPEK--R-AV--- 141 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~-~~~~~g~~~------------~~~~~~~~~~~--~-~~--- 141 (218)
.-+.+|++|...++.+.+.......|+...-+|-.... .+...|. . +..+|...... + ..
T Consensus 134 ~f~~sGseAve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (459)
T PRK06082 134 LFAPGGTSAIGMALKLARHITGNFKVVSLWDSFHGASLDAISVGGE-ACFRQGMGPLMAGVERIPPAVSYRGAFPDADGS 212 (459)
T ss_pred EECCCcHHHHHHHHHHHHHhcCCCEEEEEeCCCcCccHHHHhhcCC-cccccCCCCCCCCCEEeCCCcccccccCChhHH
Confidence 47888999998888765433333678887777765432 2222221 1 11122110000 0 00
Q ss_pred ---cHHHHHHHHhcCCCCcEEEEcccCC-----CCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 142 ---DFTGMYEDLVNAPDNSVIILHACAH-----NPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 142 ---d~~~~~~~l~~~~~~~~iil~~~p~-----NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.+.+++.+.+......+++=+-.+ =|-|. .|.++|++|++.+|.| |+..|+
T Consensus 213 ~~~~~~~l~~~i~~~~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~D--EV~tG~ 274 (459)
T PRK06082 213 DVHYADYLEYVIEKEGGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIID--EIPNGM 274 (459)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--chhhCC
Confidence 1234555554321112233322111 12233 7999999999999999 998886
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.19 Score=45.59 Aligned_cols=179 Identities=15% Similarity=0.112 Sum_probs=88.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+ +.+... -+.+..+++++.. ... -..+++ .-+
T Consensus 50 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~q~~~--~~~-~~~~~~-~~~~~~lae~L~~-~~p--~~~~~v--~f~ 118 (451)
T PRK06062 50 YEGRRYLDFSSQLVNTNIG--HQHPKVVAAIQEQAAR--LCT-VAPAHA-NDARSEAARLIAE-RAP--GDLSKV--FFT 118 (451)
T ss_pred CCCCEEEEcccCHHhhcCC--CCCHHHHHHHHHHHHh--cCC-cCCccC-CHHHHHHHHHHHH-hCC--CCCCEE--EEc
Confidence 4577777876664333345 4456777776665543 222 111111 2223334444432 110 011454 467
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH-HHHHhCCC----------cceeE--eccCCcCcc--cc------
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL-VFLNAGFT----------EAREY--RYWNPEKRA--VD------ 142 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~-~~~~~g~~----------~~~~~--~~~~~~~~~--~d------ 142 (218)
.+|++|...++++.+....-.+|+...-+|-.... .+...+.. .+..+ |......+. .|
T Consensus 119 ~SGsEAve~AlklAr~~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 198 (451)
T PRK06062 119 NGGADANEHAVRMARLHTGRPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFLYRSEFHATTEEEECER 198 (451)
T ss_pred CChHHHHHHHHHHHHHhhCCceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCCEEeCCCCccccccCCCChHHHHHH
Confidence 88899998888865433223567777766665432 22222210 01111 110000000 01
Q ss_pred -HHHHHHHHhcCCCCc--EEEEcccCC------CCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 143 -FTGMYEDLVNAPDNS--VIILHACAH------NPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 143 -~~~~~~~l~~~~~~~--~iil~~~p~------NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
++.+++.|+...+.. .+++-+-.. -|-|. .|.++|++|++.+|.| |+..||
T Consensus 199 ~~~~le~~l~~~~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~D--EV~tGf 260 (451)
T PRK06062 199 ALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIAD--EVMAGF 260 (451)
T ss_pred HHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEee--ccccCC
Confidence 455666664321122 333322221 13343 7999999999999999 998886
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.074 Score=48.04 Aligned_cols=175 Identities=13% Similarity=-0.001 Sum_probs=91.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ......++....+|-+.+.+.. . ...+++ .-+
T Consensus 50 ~dG~~yiD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~~~~~~~~~~~~la~~L~~~~-~------~~~~~v--~f~ 116 (433)
T PRK00615 50 SLGKTFIDFCGSWGSLIHG--HSHPKICDAIQQGAER--GTSYGLTSEQEILFAEELFSYL-G------LEDHKI--RFV 116 (433)
T ss_pred CCCCEEEEcccchhccccC--CCCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHhC-C------CCcCEE--EEe
Confidence 4577788887664333445 4577888887766643 2221223333334444443332 1 111344 466
Q ss_pred ccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHH----HHHHhCCCc--c--eeE--eccCCcC---ccccHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRL----VFLNAGFTE--A--REY--RYWNPEK---RAVDFTGMYED 149 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~----~~~~~g~~~--~--~~~--~~~~~~~---~~~d~~~~~~~ 149 (218)
.+|++|...++.+.+.. .| ..|+...-+|-.... .+...+- . . ..+ +...... ...|.+.+++.
T Consensus 117 ~SGsEA~e~AiklAr~~-tgr~~ii~~~~~yHG~td~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 194 (433)
T PRK00615 117 SSGTEATMTAVRLARGI-TGRSIIIKFLGCYHGHADTLLQGISFSET-SLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTV 194 (433)
T ss_pred CchHHHHHHHHHHHHHh-hCCCEEEEEcCccCCCCcccCcccccCCC-CcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHH
Confidence 78889888888765433 45 466666666655321 1111110 0 0 000 0000000 01166777777
Q ss_pred HhcCCCC-cEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 150 LVNAPDN-SVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 150 l~~~~~~-~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.+...+ ..+++-+-..+ |.|. +|.++|++|++.+|.| |+..|+
T Consensus 195 l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~D--Ev~tG~ 247 (433)
T PRK00615 195 MNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMD--EVVTGF 247 (433)
T ss_pred HHhcCCceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEE--cccccc
Confidence 7543222 23333221121 3343 8999999999999999 998887
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.11 Score=46.79 Aligned_cols=179 Identities=12% Similarity=0.078 Sum_probs=89.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCC-cHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLG-LESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G-~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| .-.|.|.+|.++.++. ..+ ....+ .-+.+..+++++.. ... ...+++ .-
T Consensus 40 ~dG~~ylD~~~g~~~~~lG--h~~p~i~~Ai~~q~~~--~~~--~~~~~~~~~~~~~la~~L~~-~~p--~~~~~v--~f 108 (428)
T PRK07986 40 ADGRRLVDGMSSWWAAIHG--YNHPQLNAAMKSQIDA--MSH--VMFGGITHPPAIELCRKLVA-MTP--QPLECV--FL 108 (428)
T ss_pred CCCCEEEEcchhHHhhcCC--CCCHHHHHHHHHHHhh--cCC--ccccccCCHHHHHHHHHHHh-hCC--CCcCEE--EE
Confidence 4566677776654333344 4467788887665543 111 11111 12233445555533 210 112344 47
Q ss_pred eccChhHHHHHHHHHHHh-----cCCCeEEecCCCchhHHHH-HHHhCCC------------cceeEeccCCc---Cc-c
Q psy6266 83 TLSGTGALRVGAEFLHRI-----LNYTTFYYSKPTWENHRLV-FLNAGFT------------EAREYRYWNPE---KR-A 140 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l-----~~gd~V~i~~P~y~~y~~~-~~~~g~~------------~~~~~~~~~~~---~~-~ 140 (218)
+.+|++|...++++.+.. ..-.+|+...-+|-..... +...+.. .+...+..... .+ .
T Consensus 109 ~~SGsEAve~AlklAr~~~~~~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 188 (428)
T PRK07986 109 ADSGSVAVEVAMKMALQYWQAKGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDE 188 (428)
T ss_pred eCCcHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHH
Confidence 788889888887754433 1235788888877653311 1111110 01111110000 00 1
Q ss_pred ccHHHHHHHHhcCCCC-cEEEEcc----cCC---CCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 141 VDFTGMYEDLVNAPDN-SVIILHA----CAH---NPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 141 ~d~~~~~~~l~~~~~~-~~iil~~----~p~---NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
-|.+.+++.+++.... ..+++-+ ... -|.|. +|.++|++|++.+|.| |+..|+
T Consensus 189 ~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~D--Ev~tG~ 251 (428)
T PRK07986 189 RDIAPFARLMAAHRHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIAD--EIATGF 251 (428)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEe--ccccCC
Confidence 2455666666543222 2233311 111 13344 8999999999999999 887765
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.17 Score=44.99 Aligned_cols=163 Identities=12% Similarity=-0.020 Sum_probs=94.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCC----cHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLG----LESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
..|..++|++--.|- | ...-+.+++|..+.+++ ..+...=--..| ..+|=+.+|++.-. ++.
T Consensus 36 ~~~~~~~nf~SNdYL---G-La~~~~~~~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~---------e~a 102 (388)
T COG0156 36 ADGRKVLNFCSNDYL---G-LASHPELIEAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGA---------EAA 102 (388)
T ss_pred cCCceeEeeeccCcc---c-ccCCHHHHHHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCC---------CcE
Confidence 346789999988773 2 44556677776666644 111111111234 35666677776532 222
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC---CC
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PD 155 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~ 155 (218)
.+-+.| =.|-..++.++ +.++|-|+.-.=...+-..-+++.++ +.+.| . ..|++.+++.|++. ..
T Consensus 103 -l~f~SG-y~AN~~~i~~l--~~~~dli~~D~lnHASiidG~rls~a-~~~~f---~----HnD~~~Le~~l~~~~~~~~ 170 (388)
T COG0156 103 -LLFSSG-FVANLGLLSAL--LKKGDLIFSDELNHASIIDGIRLSRA-EVRRF---K----HNDLDHLEALLEEARENGA 170 (388)
T ss_pred -EEEccc-chhHHHHHHHh--cCCCcEEEEechhhhhHHHHHHhCCC-cEEEe---c----CCCHHHHHHHHHhhhccCC
Confidence 223333 33333344444 45788888877775555555666666 55555 2 24778888888762 11
Q ss_pred CcEEEEcc--cCCCCcHH---HHHHHhhcCeEEEeeCCceeec
Q psy6266 156 NSVIILHA--CAHNPTAQ---QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 156 ~~~iil~~--~p~NPTG~---~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.++|+.- .-.+.+-+ +|.+++++|+.|++.| |+++
T Consensus 171 ~~~~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VD--EAHa 211 (388)
T COG0156 171 RRKLIVTEGVFSMDGDIAPLPELVELAEKYGALLYVD--EAHA 211 (388)
T ss_pred CceEEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEE--cccc
Confidence 23333321 11222222 8999999999999999 8877
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.19 Score=46.36 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=90.9
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC-CCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV-LGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
-..|...||+.-|.....-| ...|.|.+|.++.+++ ..+ +... .+.-+....+++++.. .... ...+++ .
T Consensus 85 D~dG~~ylD~~sg~~~~~lG--h~hp~v~~Av~~ql~~--~~~-~~~~~~~~~~~~~~lae~L~~-~~~~-~~~~~v--~ 155 (504)
T PLN02760 85 DINGKKYLDALAGLWCTALG--GSEPRLVAAATEQLNK--LPF-YHSFWNRTTKPSLDLAKELLE-MFTA-RKMGKV--F 155 (504)
T ss_pred ECCCCEEEEcCcCHHhcccC--CCCHHHHHHHHHHHhh--ccc-eecccccCcHHHHHHHHHHHh-hcCC-CCCCEE--E
Confidence 35677888887764434455 4567788877666543 121 1111 1233444555666543 2100 111343 4
Q ss_pred EeccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHH-HHHHhCCCcce------------eEec---cC---C
Q psy6266 82 QTLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRL-VFLNAGFTEAR------------EYRY---WN---P 136 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~-~~~~~g~~~~~------------~~~~---~~---~ 136 (218)
-+.+|++|...++.+.+... ++ +.|+..+-+|-.... .+...|. ... ..++ |. .
T Consensus 156 f~~SGsEA~e~AlKlAr~~~~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 234 (504)
T PLN02760 156 FTNSGSEANDTQVKLVWYYNNALGRPNKKKFIARSKSYHGSTLISASLSGL-PALHQKFDLPAPFVLHTDCPHYWRFHLP 234 (504)
T ss_pred EeCChHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCccCChHhhhhccCC-hhhccCCCCCCCCcEEeCCCcccccCCC
Confidence 67888999888887653221 22 567777777766432 1222221 111 1111 00 0
Q ss_pred cCc-----cccHHHHHHHHhcCCCCc--EEEEcccCC------CCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 137 EKR-----AVDFTGMYEDLVNAPDNS--VIILHACAH------NPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 137 ~~~-----~~d~~~~~~~l~~~~~~~--~iil~~~p~------NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
... ....+.+++.+.+..+.. .+++=+-.. -|.|. .|.++|++|++.+|.| |+..||
T Consensus 235 ~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~D--EV~TGf 306 (504)
T PLN02760 235 GETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIAD--EVICAF 306 (504)
T ss_pred CCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEec--chhhCC
Confidence 000 001123444443221222 233222111 14444 8999999999999999 998887
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.24 Score=45.05 Aligned_cols=109 Identities=13% Similarity=-0.004 Sum_probs=58.5
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc--CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE--YLPVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
|...|...||+.-|.....-| ...|.|.+|.++.+.. ...+. +.+. +.+..+++++.. .........++
T Consensus 53 ~D~dG~~ylD~~~g~~~~~lG--H~~p~v~~Ai~~q~~~-~~~~~~~~~~~----~~~~~lAe~L~~-~~p~~~~~~~~- 123 (459)
T PRK06931 53 TDVEGNQYLDCLAGAGTLALG--HNHPDVLQSIQDVLTS-GLPLHTLDLTT----PLKDAFSEYLLS-LLPGQGKEYCL- 123 (459)
T ss_pred EeCCCCEEEEcccchhhccCC--CCCHHHHHHHHHHHhh-hccccccccCC----HHHHHHHHHHHH-hCCCccccceE-
Confidence 446788888887775444455 4566777776665532 11111 1222 334444555532 11000000122
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV 119 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~ 119 (218)
++.+.+|++|...++.+.+....-+.|+...-+|-.....
T Consensus 124 ~f~~~SGsEAve~AlklAr~~tgr~~Ii~~~~~yHG~t~~ 163 (459)
T PRK06931 124 QFTGPSGADAVEAAIKLAKTYTGRSNVISFSGGYHGMTHG 163 (459)
T ss_pred EEeCCCcHHHHHHHHHHHHHhcCCCeEEEECCCcCCccHH
Confidence 3456788999988888654443345677777777665533
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.15 Score=46.42 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=85.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC-CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV-LGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-|+ ..|.|.+|.++.++. ..+ +... .+.-+....+++++.. .-. -..+++ +.
T Consensus 51 ~dG~~ylD~~~g~~~~~lGh--~hp~v~~A~~~q~~~--~~~-~~~~~~~~~~~~~~lae~L~~-~~p--~~~~~v--~f 120 (460)
T PRK12403 51 NDGKRYLDGMSGLWCTNLGY--GRKDLAAAAARQMEQ--LPY-YNMFFHTTHPAVIELSELLFS-LLP--GHYSHA--IY 120 (460)
T ss_pred CCCCEEEECchhHHhhcCCC--CCHHHHHHHHHHHHh--CCC-eecccccCCHHHHHHHHHHHH-hCC--CCcCEE--EE
Confidence 45777778665543334453 457788877666643 121 1111 2223334444555432 110 011444 57
Q ss_pred eccChhHHHHHHHHHHHh-----cCCCeE-EecCCCchhHH-HHHHHhCCCc-----------ceeEe--ccCCcCccc-
Q psy6266 83 TLSGTGALRVGAEFLHRI-----LNYTTF-YYSKPTWENHR-LVFLNAGFTE-----------AREYR--YWNPEKRAV- 141 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l-----~~gd~V-~i~~P~y~~y~-~~~~~~g~~~-----------~~~~~--~~~~~~~~~- 141 (218)
+.+|++|...++.+.+.. .+++.+ +...-+|-... ..+...|. . +..+| .+....+..
T Consensus 121 ~~SGseA~e~AiklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~~~s~s~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 199 (460)
T PRK12403 121 TNSGSEANEVLIRTVRRYWQVLGKPQKKIMIGRWNGYHGSTLAATALGGM-KFMHEMGGLIPDVAHIDEPYWYANGGELT 199 (460)
T ss_pred eCCcHHHHHHHHHHHHHHHHhhCCCCCcEEEEECCCcCcccHhhhhcCCC-ccccccCCCCCCCEEeCCCcccccccCCC
Confidence 888999999888876533 133444 34444554432 12222221 1 11121 100000000
Q ss_pred -------cHHHHHHHHhcCCCCc--EEEEcccC------CCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 142 -------DFTGMYEDLVNAPDNS--VIILHACA------HNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 142 -------d~~~~~~~l~~~~~~~--~iil~~~p------~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.+.+++.+.+..+.. .+++-+-. .-|.|. .|.++|++|++.+|.| |+..|+
T Consensus 200 ~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~D--EV~tGf 268 (460)
T PRK12403 200 PAEFGRRAALQLEEKILELGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCAD--EVIGGF 268 (460)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCC
Confidence 1233444443221122 23332211 123344 8999999999999999 888776
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.31 Score=44.15 Aligned_cols=183 Identities=13% Similarity=0.061 Sum_probs=95.9
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
-..|...||+.-|.--..-| ...|.|.+|.++.++... ..++|.+..-.-+|-+.+.+..-+ . ..+. ++
T Consensus 52 DvdG~~ylDf~sgi~v~~~G--H~hP~Vv~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~-~-----~~~~--~~ 121 (447)
T COG0160 52 DVDGNEYLDFLSGIAVLNLG--HNHPRVVEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPG-S-----GLKK--VF 121 (447)
T ss_pred eCCCCEEEEcccCcchhccC--CCCHHHHHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCc-c-----cCCe--EE
Confidence 34677778887754333455 457788887665443311 234555554444444444443322 1 1123 35
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH-HHHhCCC------------cceeEeccCCcC--ccc-----
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-FLNAGFT------------EAREYRYWNPEK--RAV----- 141 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-~~~~g~~------------~~~~~~~~~~~~--~~~----- 141 (218)
-+++|++|...++++-+..-....|+...=+|-..... +.+.|-. .++.+|+...-. ++.
T Consensus 122 f~~sGaeA~E~AiKiAr~~Tgr~~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~ 201 (447)
T COG0160 122 FGNSGAEAVEAAIKIARAYTGRPGVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEEC 201 (447)
T ss_pred ecCCcHHHHHHHHHHHHHHhCCCcEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhh
Confidence 77788899998888654433457888888777654322 1211110 133344321111 111
Q ss_pred ---cHHHHHHHHhcC--CCC-c-EEEE---cc---cCCCCcHH--HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 142 ---DFTGMYEDLVNA--PDN-S-VIIL---HA---CAHNPTAQ--QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 142 ---d~~~~~~~l~~~--~~~-~-~iil---~~---~p~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
..+.++..+... .+. . .+++ |. .-.-|.|. .+.++|+||+|.+|.| |+=.|+-.
T Consensus 202 ~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~D--EVQtG~GR 270 (447)
T COG0160 202 GDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIAD--EVQTGFGR 270 (447)
T ss_pred hHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCc
Confidence 122233333322 111 2 2232 11 12335555 7999999999999999 88777643
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.22 Score=45.52 Aligned_cols=182 Identities=12% Similarity=0.078 Sum_probs=88.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCC---cCCCceEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPP---LREGRAFG 80 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~---~~~~~v~~ 80 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+........ +-+..+++++.. .-... -.-+++
T Consensus 61 ~dG~~ylD~~~g~~~~~lG--h~~p~i~~Ai~~q~~~--l~~~~~~~~~~-~~~~~lae~L~~-~~p~~~~~~~~~~v-- 132 (472)
T PRK08742 61 HDGRRYLDAVSSWWTNLFG--HAEPRIGAAIAAQAGE--LEQVMLAGFTH-EPAVQLAEQLLA-IAPRQDGRAPLSKV-- 132 (472)
T ss_pred CCCCEEEEcCccHHhccCC--CCCHHHHHHHHHHHHh--CCCccccccCC-HHHHHHHHHHHH-hCCCcccCCCCCEE--
Confidence 4577777876664333345 3466777776655432 11111111111 223444555432 11000 012354
Q ss_pred EEeccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHHHHHHhCCCc------------ceeEeccCCc--Ccc
Q psy6266 81 VQTLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRLVFLNAGFTE------------AREYRYWNPE--KRA 140 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~~~~~~g~~~------------~~~~~~~~~~--~~~ 140 (218)
.-+.+|++|...++++.+... ++ .+|+...-+|-............. +..+|..... ..+
T Consensus 133 ~f~~sGSEAvE~AlKlAr~~~~~~g~~~r~~ii~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~ 212 (472)
T PRK08742 133 FYADNGSAGVEVALKMAFHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPG 212 (472)
T ss_pred EEeCCchHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccC
Confidence 577888898888877654331 22 577777877766542222221100 1111110000 000
Q ss_pred --------ccHHHHHHHHhcCCCCcEEEEcccC--CC-------CcHH--HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 141 --------VDFTGMYEDLVNAPDNSVIILHACA--HN-------PTAQ--QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 141 --------~d~~~~~~~l~~~~~~~~iil~~~p--~N-------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
.+.+.+++.+.+....-..++. -| ++ |.|. .+.++|++|++.+|.| |+..||-
T Consensus 213 ~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~-EPviqg~gG~~~~p~~fl~~lr~lc~~~gillI~D--EV~TGfG 284 (472)
T PRK08742 213 QSAEDYALQAADALQALFEQSPGEICALIL-EPRLQCAGGMRMHHPAYLRRARELCDAHGAFLIAD--EIATGFG 284 (472)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceEEEEE-ccccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe--chhhCCC
Confidence 0245555555432122122221 22 21 3444 7999999999999999 9988873
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.34 Score=44.02 Aligned_cols=171 Identities=12% Similarity=0.010 Sum_probs=88.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+..|.-...-| ...|.|.+|.++.++. ..+...++....+|-+.+.+.. + .+++ .-+
T Consensus 72 ~DG~~yiD~~~g~g~~~lG--h~~p~i~~Av~~q~~~--~~~~~~~~~~~~~lAe~l~~~~-~--------~~~v--~F~ 136 (453)
T PRK07046 72 VDGHRYDDFCLGDTGAMFG--HSPAPVARALAEQARR--GLTTMLPSEDAAWVGEELARRF-G--------LPYW--QVA 136 (453)
T ss_pred CCCCEEEEecccccccccC--CCCHHHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHh-C--------CCEE--EEE
Confidence 3567778876554223344 4467888887776644 2222223333333434333322 1 2454 467
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH-HHHH-hCCCcceeEecc-------CCcCc---cccHHHHHHHHh
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL-VFLN-AGFTEAREYRYW-------NPEKR---AVDFTGMYEDLV 151 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~-~~~~-~g~~~~~~~~~~-------~~~~~---~~d~~~~~~~l~ 151 (218)
.+|++|...++++-+....-+.|+...=+|-.... .+.. ... ++...+.+ ..... -.|++.+++.+.
T Consensus 137 nSGtEA~e~AlrlAR~~TGr~~ii~~~g~YHG~~d~~l~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~ 215 (453)
T PRK07046 137 TTATDANRFVLRWARAVTGRPKILVFNGCYHGTVDDVFVDLVDG-RPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALA 215 (453)
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCcHHhHhhccCC-CCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhC
Confidence 88889888887765443334567777766666421 1111 111 11000000 00000 016788877774
Q ss_pred cCCCCcEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeec
Q psy6266 152 NAPDNSVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 152 ~~~~~~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
. .+-..+++-+-..| |.|. ++.++|+++++.+|.| |+..
T Consensus 216 ~-~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~D--EV~t 262 (453)
T PRK07046 216 D-GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVID--ETHT 262 (453)
T ss_pred C-CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEE--cccc
Confidence 2 12223343222222 2233 8999999999999999 8764
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.055 Score=53.53 Aligned_cols=142 Identities=18% Similarity=0.132 Sum_probs=86.0
Q ss_pred eeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC-----CC----cHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 11 CEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV-----LG----LESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 11 ~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-----~G----~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
.++.|.| + ..+|+.|.++..... +..+.|+|. +| +.+|++.++++. | .+.+++.
T Consensus 107 fiG~G~y---~--~~~P~~v~~~i~~~~---~~~TaytPYqaEisQG~lqal~~~Qt~ia~Lt-G------~~~anaS-- 169 (993)
T PLN02414 107 YIGMGYY---N--THVPPVILRNILENP---GWYTQYTPYQAEIAQGRLESLLNYQTMITDLT-G------LPMSNAS-- 169 (993)
T ss_pred ccCCCCC---C--ccCCHHHHHHHHhCh---HHHhhcCCCchHHHHHHHHHHHHHHHHHHHHh-C------CChhhEe--
Confidence 3566654 1 246777766544322 234566664 34 567777787765 3 4445554
Q ss_pred EeccChhHHHHHHHHHHHhcCC--CeEEecCCCchhHHHHHHH----hCCCcceeEeccCCcCccccHHHHHHHHhcCCC
Q psy6266 82 QTLSGTGALRVGAEFLHRILNY--TTFYYSKPTWENHRLVFLN----AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~g--d~V~i~~P~y~~y~~~~~~----~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 155 (218)
.+.+++.+...+++++. +.+| |+|++++-.||.+...++. .|+ +++.++.. . .+ ... ..
T Consensus 170 L~d~aTAaaea~~~a~~-~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~Gi-eV~~v~~~-~----~~------~~~--~~ 234 (993)
T PLN02414 170 LLDEGTAAAEAMAMCNN-ILKGKKKKFLIASNCHPQTIDVCQTRADGLGL-EVVVADEK-D----FD------YSS--GD 234 (993)
T ss_pred ecCChHHHHHHHHHHHh-cccCCCCEEEEcCccCHhHHHHHHHhhhhcCC-EEEEecch-h----hc------ccc--Cc
Confidence 77888888887776653 5555 7899999999998876644 476 66666541 1 11 011 01
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhhcCeEEEee
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLR 186 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~ 186 (218)
...++++ + -|.||. +|.++|+++++.++.
T Consensus 235 v~~vlvq-~-P~~~G~v~dv~~I~~~ah~~GaL~iV 268 (993)
T PLN02414 235 VCGVLVQ-Y-PATDGEVLDYAEFVKNAHANGVKVVM 268 (993)
T ss_pred eEEEEEe-c-CCCCeEEcCHHHHHHHHHHcCCEEEE
Confidence 1123332 1 234786 788999999887776
|
|
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.29 Score=43.42 Aligned_cols=163 Identities=12% Similarity=0.018 Sum_probs=98.5
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHH-HHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSA-ATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~a-ia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
.++||++-=+.+..-|.....+.+.+|...+.+. .-...|.-..|.-.=|.. +++...+ .... ..+.++..
T Consensus 20 ~~viN~~G~v~~t~lG~s~~~~e~iea~~~~~~~-~v~Le~~l~~g~~~~R~~~~~~~~~~------~~~a-ea~~ivnn 91 (395)
T COG1921 20 RRVINAIGTVLMTNLGRSLYSPEAIEAMKEAMRA-PVELETDLKTGKRGARLTELAELLCG------LTGA-EAAAIVNN 91 (395)
T ss_pred hhhhhhhhhheeccCCCccCCHHHHHHHHHHhcc-cceeeeecccchhhHHHHHHHHHHhc------ccch-hheeeECC
Confidence 3567776645555566666777777777776654 223356555554333333 3444444 2211 12357777
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEec-----CCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEE
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYS-----KPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVII 160 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~-----~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ii 160 (218)
.+.|+.++..++ -++.+|++. +++-++-..+++++|+ +.+.+-.. .....+.++.+|.+. .+..+.
T Consensus 92 n~aAVll~~~al---~~~~EvVis~g~lV~gg~~~v~d~~~~aG~-~l~EvG~t----n~t~~~d~~~AIne~-ta~llk 162 (395)
T COG1921 92 NAAAVLLTLNAL---AEGKEVVVSRGELVEGGAFRVPDIIRLAGA-KLVEVGTT----NRTHLKDYELAINEN-TALLLK 162 (395)
T ss_pred cHHHHHHHHhhh---ccCCeEEEEccccccCCCCChhHHHHHcCC-EEEEeccc----CcCCHHHHHHHhccC-CeeEEE
Confidence 777777766655 246676664 2577778889999999 88887442 234667777778642 112222
Q ss_pred EcccCC-CCcHH----HHHHHhhcCeEEEeeC
Q psy6266 161 LHACAH-NPTAQ----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 161 l~~~p~-NPTG~----~l~~l~~~~~i~ii~D 187 (218)
++ +.| --||. ++.++|++|++.++.|
T Consensus 163 V~-s~~~~f~~~l~~~~l~~ia~~~~lpvivD 193 (395)
T COG1921 163 VH-SSNYGFTGMLSEEELVEIAHEKGLPVIVD 193 (395)
T ss_pred Ee-eccccccccccHHHHHHHHHHcCCCEEEe
Confidence 33 222 12232 8999999999999999
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.53 Score=42.88 Aligned_cols=181 Identities=13% Similarity=0.072 Sum_probs=90.1
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc--CcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE--YLPVLGLESFSSAATRMLLGGDASPPLRE-GRAF 79 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~--Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~ 79 (218)
-..|...||+.-|.....-| ...|.|.+|.++.+++ ...+. +..+. .+..+++.+.. .-...+.. +++
T Consensus 59 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~ql~~-~~~~~~~~~~~~----~~~~la~~L~~-~~p~~~~~~~~v- 129 (464)
T PRK06938 59 DVEGRQFIDCLAGAGTLALG--HNHPVVIEAIQQVLAD-ELPLHTLDLTTP----VKDQFVQDLFA-SLPEAFAREAKI- 129 (464)
T ss_pred eCCCCEEEEccCCccccccC--CCCHHHHHHHHHHHHh-hhcccccccCCH----HHHHHHHHHHH-hCcccccccceE-
Confidence 35678888887665444455 4567788887665532 11111 12222 23334444432 11000111 233
Q ss_pred EEEeccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHHH-HHHhCCC-----------cceeEeccCCcCc-------
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLV-FLNAGFT-----------EAREYRYWNPEKR------- 139 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~-~~~~g~~-----------~~~~~~~~~~~~~------- 139 (218)
.+.+.+|++|...++++.+.. .| +.|+...-+|-..... +...+-. .+..+|+......
T Consensus 130 ~f~~~SGSEAve~AlklAr~~-tgr~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 208 (464)
T PRK06938 130 QFCGPTGTDAVEAALKLVKTA-TGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGE 208 (464)
T ss_pred EEeCCCcHHHHHHHHHHHHHh-hCCCeEEEECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchh
Confidence 233468899998888865433 44 5677767666654322 2211100 1112221100000
Q ss_pred ---cccHHHHHHHHhcCC----CCcEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 140 ---AVDFTGMYEDLVNAP----DNSVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 140 ---~~d~~~~~~~l~~~~----~~~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..+++.+++.+.+.. .-..+++=+-..+ |-|. ++.++|++|++.+|.| |+..||
T Consensus 209 ~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~D--EV~tGf 277 (464)
T PRK06938 209 AGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVD--EIQSGF 277 (464)
T ss_pred hHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCC
Confidence 012455666665321 1123333221111 2343 8999999999999999 999988
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.027 Score=49.74 Aligned_cols=125 Identities=10% Similarity=0.054 Sum_probs=71.0
Q ss_pred EEEeccChh-HHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC-cCccccHHHHHHHHhcCCCCc
Q psy6266 80 GVQTLSGTG-ALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP-EKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 80 ~~~t~G~~~-al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~ 157 (218)
+++++.+|| .+.+.+.+++.-..++.|+.+.=--=+....+..+|+ +++.++.... +....|.+.+++.+++..+..
T Consensus 77 ~~~vP~atgm~l~l~l~~l~~r~~a~~Viw~ridqkSc~kai~~AGl-~~~vV~~~~~~d~l~td~~~ie~~i~~~G~~~ 155 (389)
T PF05889_consen 77 CFVVPMATGMSLTLCLLALRMRPKAKYVIWPRIDQKSCFKAIERAGL-EPVVVENVLEGDELITDLEAIEAKIEELGADN 155 (389)
T ss_dssp EEEESS-HHHHHHHHHHHHHHHCT--EEEEEEEETHHHHHHHHHTT--EEEEE-EEEETTEEEEHHHHHHHHHHHHCGGG
T ss_pred eEEEecccccHHHHHHHHHhcccCCceEEEeeccccchHHHHHhcCC-eEEEeeccCCCCeeeccHHHHHHHHHHhCCCC
Confidence 568888888 6667777665223489988876544444456677899 9999985322 222337888888886542333
Q ss_pred EEEEc-----ccCCCCcHH-HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHH
Q psy6266 158 VIILH-----ACAHNPTAQ-QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211 (218)
Q Consensus 158 ~iil~-----~~p~NPTG~-~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~ 211 (218)
++.+. +.|++|--. +|+++|++++|..+-. -+|.=-+ .+.+..|.++.
T Consensus 156 iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvN--nAYgvQ~----~~~~~~i~~a~ 209 (389)
T PF05889_consen 156 ILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVN--NAYGVQS----SKCMHLIQQAW 209 (389)
T ss_dssp EEEEEEESSTTTTB----HHHHHHHHHHHT--EEEE--GTTTTT-----HHHHHHHHHHH
T ss_pred eEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEc--cchhhhH----HHHHHHHHHHH
Confidence 33222 355666533 8999999999998888 6774311 24455555443
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.099 Score=47.25 Aligned_cols=159 Identities=14% Similarity=0.109 Sum_probs=96.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|.+..|||=-. -+.-.+.+..++|+.. +.-.|..+.-.-.|.+.+++.+ | + +. ++-|
T Consensus 38 ~s~dV~IDLrSD-----TgT~apS~~m~aAM~~------GDD~Y~gdpSv~~Lee~vael~-G-~-------E~--alpt 95 (467)
T TIGR02617 38 DSEDVFIDLLTD-----SGTGAVTQSMQAAMMR------GDEAYSGSRSYYALAESVKNIF-G-Y-------QY--TIPT 95 (467)
T ss_pred CCCCeEEECccC-----CCCCCCCHHHHHHHHc------CCcccccCchHHHHHHHHHHHh-C-C-------ce--EEEC
Confidence 344555555322 2321245566655442 2345988888999999888755 4 2 11 3567
Q ss_pred ccChhHHHHHHHHHHHhc-CCCeEEecCC--------CchhHHHHHHHhCCCcceeEecc--------CCcCccccHHHH
Q psy6266 84 LSGTGALRVGAEFLHRIL-NYTTFYYSKP--------TWENHRLVFLNAGFTEAREYRYW--------NPEKRAVDFTGM 146 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-~gd~V~i~~P--------~y~~y~~~~~~~g~~~~~~~~~~--------~~~~~~~d~~~~ 146 (218)
..+.++-.++++++ +. |||++.+..+ .|..-.......|+ .++.++.. ......+|++.+
T Consensus 96 hqGRgaE~Il~~~~--~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l~G~-~~~~l~~~ea~~~~~~~~fkG~~dl~~l 172 (467)
T TIGR02617 96 HQGRGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGC-TARNVYTKEAFDTGVRYDFKGNFDLEGL 172 (467)
T ss_pred CCCchHHHHHHHhh--cccccccccccccccccceEEEEecchHHHHHcCc-eeecccchhhcccccCCCCCCCcCHHHH
Confidence 77788888888776 45 6888876554 13222245677787 66665321 111246799999
Q ss_pred HHHHhcCCCC--cEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCC
Q psy6266 147 YEDLVNAPDN--SVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 147 ~~~l~~~~~~--~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~ 188 (218)
++.|++..+. ..+..-- -||-.|- ++.++|++|+|.++-||
T Consensus 173 e~~I~~~g~~~i~~v~~tl-t~N~~GGqpvslenlr~V~~la~~~GIplhLDg 224 (467)
T TIGR02617 173 ERGIEEVGPNNVPYIVATI-TCNSAGGQPVSLANLKAVYEIAKKYDIPVVMDS 224 (467)
T ss_pred HHHHhhcCCCCceeeeeeE-EEecCCCEEeCHHHHHHHHHHHHHcCCcEEEEh
Confidence 9999753111 1111111 1354443 79999999999999999
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.36 Score=43.89 Aligned_cols=103 Identities=11% Similarity=0.030 Sum_probs=56.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| ...|.|.+|.++.++... ....|.++....+|-+.+++..- ...+++ .-
T Consensus 50 ~dG~~ylD~~~g~~~~~lG--h~~p~i~~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p-------~~~~~v--~f 118 (457)
T PRK05639 50 VDGNVFIDFLAGAAAASTG--YSHPKLVKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISP-------IENPKV--LF 118 (457)
T ss_pred CCCCEEEECCcCHHhhccC--CCCHHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHhhCC-------CCcCEE--EE
Confidence 4577788887664333455 456778877666554310 11123333333444444444321 111344 46
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR 117 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~ 117 (218)
+.+|++|...++++.+.......|+...-+|-...
T Consensus 119 ~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG~t 153 (457)
T PRK05639 119 GLSGSDAVDMAIKVSKFSTRRPWILAFIGAYHGQT 153 (457)
T ss_pred eCchHHHHHHHHHHHHHhcCCCeEEEECCCcCCcc
Confidence 77889998888876543333456777777666543
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.18 Score=45.40 Aligned_cols=177 Identities=11% Similarity=0.048 Sum_probs=87.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC-CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL-NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| ...|.|.+|.++.++.... ...+.......+|-+.+++.. . .. -+++ .-
T Consensus 42 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~-~-~~-----~~~v--~f 110 (427)
T TIGR00508 42 DDGRRLIDGMSSWWAAIHG--YNHPRLNAAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMT-P-NA-----LDCV--FL 110 (427)
T ss_pred CCCCEEEEccchHHHhcCC--CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhC-C-CC-----CCEE--EE
Confidence 3466777775553212234 4466777776665543111 111223333444555555432 1 11 1344 47
Q ss_pred eccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHH-HHHHhCCCcc-------------eeEeccCCcCc---
Q psy6266 83 TLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRL-VFLNAGFTEA-------------REYRYWNPEKR--- 139 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~-~~~~~g~~~~-------------~~~~~~~~~~~--- 139 (218)
+.+|++|...++.+..... +| ..|+..+-+|-.... .+...+. .. ...+.. ...+
T Consensus 111 ~~sGseA~e~AlklAr~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~p-~~~~~~~ 188 (427)
T TIGR00508 111 ADSGSVAVEVALKMALQYWQAKGEKNRQKFLTIRSGYHGDTFGAMSVCDP-ENSMHSLYKGYLPEQIFAPAP-QNRFDEE 188 (427)
T ss_pred eCCcHHHHHHHHHHHHHHHHhhCCCCccEEEEEcCCcCCccHhhhcccCC-cccccccccccCCCCeEcCCC-Cccccch
Confidence 7788888887777543221 23 567777777766432 2222121 11 011110 0001
Q ss_pred --cccHHHHHHHHhcCCCCc-EEEEcccCC-------CCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 140 --AVDFTGMYEDLVNAPDNS-VIILHACAH-------NPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 140 --~~d~~~~~~~l~~~~~~~-~iil~~~p~-------NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..|++.+++.+.+...+. .+++-+-.+ .|.+. +|.++|++|++.+|.| |+..|+
T Consensus 189 ~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~D--Ev~tG~ 254 (427)
T TIGR00508 189 WNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIAD--EIATGF 254 (427)
T ss_pred hHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEe--ccccCC
Confidence 114555666665332222 223222101 14454 8999999999999999 888775
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.25 Score=44.95 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=86.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC-ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN-HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| ...|.|.+|.++.++..... ..+..+....+|-+.+++.. . -..+++ .-
T Consensus 53 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~-p------~~~~~v--~f 121 (460)
T PRK06916 53 VNGNEYYDGVSSIWLNVHG--HQVPELDEAIREQLNKIAHSTLLGLANVPSILLAEKLIEVV-P------EGLKKV--FY 121 (460)
T ss_pred CCCCEEEEcchhHHHhhcC--CCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhC-C------CCCCEE--EE
Confidence 4566677765543222234 44677777766655431001 11222322233444443322 1 011344 57
Q ss_pred eccChhHHHHHHHHHHHh-----cCC-CeEEecCCCchhHHH-HHHHhCCC-----------cceeEeccCCc--Cc---
Q psy6266 83 TLSGTGALRVGAEFLHRI-----LNY-TTFYYSKPTWENHRL-VFLNAGFT-----------EAREYRYWNPE--KR--- 139 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l-----~~g-d~V~i~~P~y~~y~~-~~~~~g~~-----------~~~~~~~~~~~--~~--- 139 (218)
+.+|++|...++.+.+.. .+| +.|+...-+|-.... .+...|-. ....+|..... ..
T Consensus 122 ~~SGseAve~AlklAr~~~~~~g~tgr~~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~ 201 (460)
T PRK06916 122 SDSGATAVEIAIKMAFQYWQNKGKPKKQRFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGND 201 (460)
T ss_pred eCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCcCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCC
Confidence 788889888887754332 133 567777777766432 22221210 01112110000 00
Q ss_pred -----cccHHHHHHHHhcCCCC-cEEEEcccCCC-------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 140 -----AVDFTGMYEDLVNAPDN-SVIILHACAHN-------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 140 -----~~d~~~~~~~l~~~~~~-~~iil~~~p~N-------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..+++.+++.+++.... ..+++-+-.+. |.+. .+.++|+++++.+|.| |+..|+
T Consensus 202 ~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI~D--EV~TG~ 270 (460)
T PRK06916 202 KAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITD--EVATGF 270 (460)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEEee--chhhCC
Confidence 01345556666532222 22232110011 3333 7999999999999999 998886
|
|
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.07 Score=46.47 Aligned_cols=181 Identities=12% Similarity=0.045 Sum_probs=90.0
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
...|...||+.-|.....-| ...|.|.+|.++.++. ..+ .....-.-+.+.++++++.. .- + -..+++ .-
T Consensus 12 d~dG~~~lD~~~~~~~~~lG--h~~p~i~~ai~~~~~~--~~~-~~~~~~~~~~~~~la~~L~~-~~-p-~~~~~v--~f 81 (339)
T PF00202_consen 12 DVDGREYLDFMSGYGSVNLG--HNHPEIAEAIAEQANK--LNY-VSFSGFTHPEAAELAEKLAE-LF-P-GGLDRV--FF 81 (339)
T ss_dssp ETTSEEEEESSHHHHTTTT---BT-HHHHHHHHHHHHH--CSS-CSTTTSEEHHHHHHHHHHHH-HS-S-TTEEEE--EE
T ss_pred ECCCCEEEECCCCccceecC--CCccccchhHHHHhhh--ccc-ccccceeccchhhhhhhhhh-cc-c-ccccee--ee
Confidence 35688889987665434455 4567888887776643 222 11122333445556666543 11 0 012343 47
Q ss_pred eccChhHHHHHHHHHH------HhcCCCeEEecCCCchhHHHHHHHhCCC------------cceeEeccCCcC---ccc
Q psy6266 83 TLSGTGALRVGAEFLH------RILNYTTFYYSKPTWENHRLVFLNAGFT------------EAREYRYWNPEK---RAV 141 (218)
Q Consensus 83 t~G~~~al~~~~~~l~------~l~~gd~V~i~~P~y~~y~~~~~~~g~~------------~~~~~~~~~~~~---~~~ 141 (218)
+.+|++|...++.+.. ....-..|+...-+|............. .+..+|+..... ..-
T Consensus 82 ~~sGseAve~Alkla~~~~~~~~~~~r~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 161 (339)
T PF00202_consen 82 ANSGSEAVEAALKLARQYHNKRAYTGRRKILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQA 161 (339)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTHHHTTTEEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhhcccccccccCCceEEEeeeeeeccCcccccccCCccccccccccccccccccCCccchhhhHHH
Confidence 7888999888887654 2112467777777777654322222221 112223211000 000
Q ss_pred cHHHHHHHHhcCCCC--cEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 142 DFTGMYEDLVNAPDN--SVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 142 d~~~~~~~l~~~~~~--~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
....+.+.+.+.... ..+|+-+-..+ |.+. .|.++|++|++.+|.| |++.|+
T Consensus 162 ~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~D--EV~tG~ 223 (339)
T PF00202_consen 162 CLNALEELIAALNADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIAD--EVQTGF 223 (339)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEE--ETTTTT
T ss_pred HHHHHHHHHHhhcCCcEEEEEEeccccccCccccccchhhehcccccccccceecc--cccccc
Confidence 011122222211112 23333222111 2222 7999999999999999 999987
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.47 Score=42.93 Aligned_cols=105 Identities=16% Similarity=-0.019 Sum_probs=55.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+....... -+....+++++.. .... -..+++ .-+
T Consensus 51 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~ql~~--~~~~~~~~~~-~~~~~~lAe~L~~-~~p~-~~~~~v--~f~ 121 (441)
T PRK05769 51 VDGNVYLDFNAGIAVTNVG--HAHPKVVKAVKEQAEK--FLHYSLTDFY-YEPAVELAERLVE-IAPG-GFEKKV--FFT 121 (441)
T ss_pred CCCCEEEECCCchhhcccC--CCCHHHHHHHHHHHHh--ccCccCcccC-CHHHHHHHHHHHH-hCCC-CCCCEE--EEC
Confidence 4677788887775444455 4467788776665543 1221111001 1223344555432 1100 011344 477
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR 117 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~ 117 (218)
.+|++|...++++.+.....+.|+...-+|-...
T Consensus 122 ~SGsEA~e~AlklAr~~tgr~~Ii~~~~~yHG~t 155 (441)
T PRK05769 122 NSGTESNEAAIKIARYHTGRKYIIAFLGAFHGRT 155 (441)
T ss_pred CchHHHHHHHHHHHHHHhCCCeEEEECCCcCCcc
Confidence 8889998888875543323356777676666544
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.28 Score=44.23 Aligned_cols=174 Identities=10% Similarity=0.015 Sum_probs=86.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+...+.....+|-+.+++..-+ .+++ .-+
T Consensus 45 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~q~~~--~~~~~~~~~~~~~la~~l~~~~p~--------~~~v--~f~ 110 (431)
T PRK06209 45 VDGNEYIEYGMGLRAVGLG--HAYPPVVEAVREALQD--GCNFTRPSAIELDAAESFLELIDG--------ADMV--KFC 110 (431)
T ss_pred CCCCEEEEccccccchhcC--CCCHHHHHHHHHHHHh--CcCCCCCCHHHHHHHHHHHHhCCc--------cceE--EEe
Confidence 4577778887664333455 4467788887766643 222122222222344444443211 1344 467
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEE-ec-CCCchhHHHHHHHhCCCccee--Ee--ccC-CcCc-cccHHHHHHHHhcCCC
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFY-YS-KPTWENHRLVFLNAGFTEARE--YR--YWN-PEKR-AVDFTGMYEDLVNAPD 155 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~-i~-~P~y~~y~~~~~~~g~~~~~~--~~--~~~-~~~~-~~d~~~~~~~l~~~~~ 155 (218)
.+|++|...++++-+.. .|+..+ .. .=+|..+... ..|. .+.. .+ ... ...+ ..|++.+++.+++...
T Consensus 111 ~sGseA~e~AlklAr~~-tgr~~i~~~~~~~~h~~~~~--~~g~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 186 (431)
T PRK06209 111 KNGSDATSAAVRLARAY-TGRDLVARCADHPFFSTDDW--FIGT-TPMSAGIPASVSALTVTFRYNDIASLEALFEDHPG 186 (431)
T ss_pred cCHHHHHHHHHHHHHHH-hCCCeEEEeccCcccccccc--cccc-CCCCCCCChhHhccccccCCCCHHHHHHHHHhCCC
Confidence 88889988888764433 465443 32 1111110000 0111 1100 00 000 0000 1267888887764322
Q ss_pred C-cEEEEcccCC-CC-cHH--HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 156 N-SVIILHACAH-NP-TAQ--QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 156 ~-~~iil~~~p~-NP-TG~--~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
. ..+++-+-.. .| .+. +|.++|++|++.+|.| |+..|+-.
T Consensus 187 ~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~D--Ev~tG~~~ 231 (431)
T PRK06209 187 RIACVILEPATADEPQDGFLHEVRRLCHENGALFILD--EMITGFRW 231 (431)
T ss_pred CEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEE--cccccCCc
Confidence 2 2333322222 23 333 8999999999999999 88777743
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.21 Score=44.96 Aligned_cols=101 Identities=9% Similarity=0.052 Sum_probs=54.0
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc---CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE---YLPVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~---Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++. ..+. +..+.-..+|-+.+++..-. ..+++
T Consensus 36 D~dG~~ylD~~~g~~~~~lG--h~~p~i~~ai~~q~~~--~~~~~~~~~~~~~~~~lae~L~~~~p~-------~~~~v- 103 (422)
T PRK05630 36 LEDGSTVIDAMSSWWSAAHG--HGHPRLKAAAHKQIDT--MSHVMFGGLTHEPAIKLTRKLLNLTDN-------GLDHV- 103 (422)
T ss_pred ECCCCEEEEcchhHHHhcCC--CCCHHHHHHHHHHHHh--CCCcccCCcCCHHHHHHHHHHHhhCCC-------CcCEE-
Confidence 35677778876664333445 4467778776665543 1211 11222223444444433210 11454
Q ss_pred EEEeccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhH
Q psy6266 80 GVQTLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENH 116 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y 116 (218)
.-+.+|++|...++++.+... ++ .+|+...-+|...
T Consensus 104 -~f~~SGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~ 145 (422)
T PRK05630 104 -FYSDSGSVSVEVAIKMALQYSKGQGHPERTRLLTWRSGYHGD 145 (422)
T ss_pred -EEeCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence 477788888887777543331 23 4677777777663
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.44 Score=43.20 Aligned_cols=178 Identities=12% Similarity=0.062 Sum_probs=85.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+ +....+.+. ...+++.+.. .. + ..+++ .-+
T Consensus 44 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~~-~~~~~~~~~-~~~lae~l~~-~~-~--~~~~v--~f~ 111 (451)
T PRK07678 44 IQGNRYLDGMSGLWCVNVG--YGRKELAEAAYEQLKT--LSY-FPLTQSHEP-AIKLAEKLNE-WL-G--GEYVI--FFS 111 (451)
T ss_pred CCCCEEEEccccHHhhcCC--CCCHHHHHHHHHHHHh--cCc-cccccCCHH-HHHHHHHHHH-hC-C--CCCEE--EEe
Confidence 4566777776554333345 4467777776665543 111 111122222 2334444432 11 0 11343 477
Q ss_pred ccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHHHHHHhCCCc------------ceeEeccCCcC--cc---
Q psy6266 84 LSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRLVFLNAGFTE------------AREYRYWNPEK--RA--- 140 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~~~~~~g~~~------------~~~~~~~~~~~--~~--- 140 (218)
.+|++|...++++.+... +| .+|+...-+|-............. +..++...... ++
T Consensus 112 ~sGseA~e~AlklAr~~t~~~g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (451)
T PRK07678 112 NSGSEANETAFKIARQYHAQKGEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESE 191 (451)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCCh
Confidence 888998888877644331 23 467777777666432222111101 11111100000 00
Q ss_pred --ccH---HHHHHHHhcC-CCC-cEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 141 --VDF---TGMYEDLVNA-PDN-SVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 141 --~d~---~~~~~~l~~~-~~~-~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.+. +.+++.+... .+. ..+|+-+-..+ |.|. ++.++|++|++.+|.| |+..||
T Consensus 192 ~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~D--EV~tGf 259 (451)
T PRK07678 192 DIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISD--EVICGF 259 (451)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe--ehhhcC
Confidence 011 1234444321 122 22333221111 3343 8999999999999999 999887
|
|
| >KOG2862|consensus | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.19 Score=43.30 Aligned_cols=100 Identities=17% Similarity=0.160 Sum_probs=68.5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCC-CchhHH-HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKP-TWENHR-LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P-~y~~y~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
+...|+.|...++- ..+.|||.|++..- .|+... .+.+..|+ ++..++. .-......+.+.+.|.+.+++.+.
T Consensus 73 isgsGh~g~E~al~--N~lePgd~vLv~~~G~wg~ra~D~~~r~ga-~V~~v~~--~~G~~~~le~i~~~lsqh~p~~vf 147 (385)
T KOG2862|consen 73 ISGSGHSGWEAALV--NLLEPGDNVLVVSTGTWGQRAADCARRYGA-EVDVVEA--DIGQAVPLEEITEKLSQHKPKAVF 147 (385)
T ss_pred EecCCcchHHHHHH--hhcCCCCeEEEEEechHHHHHHHHHHhhCc-eeeEEec--CcccCccHHHHHHHHHhcCCceEE
Confidence 33345556666543 23679999988754 566543 47788899 8888854 224567899999999887666555
Q ss_pred EEcccCCCCcHH------HHHHHhhcCeEEEeeCC
Q psy6266 160 ILHACAHNPTAQ------QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 160 il~~~p~NPTG~------~l~~l~~~~~i~ii~D~ 188 (218)
+.++ -.-||. ...++|++|+.+++.|+
T Consensus 148 v~hg--dsSTgV~q~~~~~~g~lc~k~~~lllVD~ 180 (385)
T KOG2862|consen 148 VTHG--DSSTGVLQDLLAISGELCHKHEALLLVDT 180 (385)
T ss_pred EEec--CccccccchHHHHHHHHhhcCCeEEEEec
Confidence 5543 334565 35688999999999994
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.32 Score=44.20 Aligned_cols=22 Identities=18% Similarity=0.535 Sum_probs=20.7
Q ss_pred HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 172 QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 172 ~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.|.++|++|++.+|.| |+..||
T Consensus 244 ~lr~lc~~~g~llI~D--EV~tGf 265 (456)
T PRK07480 244 EIQRICRKYDILLVAD--EVICGF 265 (456)
T ss_pred HHHHHHHHcCCEEEEe--chhhCC
Confidence 7999999999999999 999887
|
|
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.34 Score=43.93 Aligned_cols=180 Identities=12% Similarity=0.024 Sum_probs=86.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+........+. +..+++++.. ... ...++| .-+
T Consensus 46 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~--l~~~~~~~~~~~~-~~~la~~L~~-~~p--~~~~~v--~f~ 115 (445)
T PRK09221 46 ADGRKILDGTAGLWCCNAG--HGRPEIVEAVARQAAT--LDYAPAFQMGHPL-AFELAERLAE-LAP--GGLDHV--FFT 115 (445)
T ss_pred CCCCEEEEccccHhhccCC--CCCHHHHHHHHHHHHh--ccCccccccCCHH-HHHHHHHHHH-hCC--CCCCEE--EEe
Confidence 4577778876664333445 4567777776665533 1111111112222 2234444432 110 012454 467
Q ss_pred ccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHHHHHHhCCC------------cceeEeccC-Cc--Cccc-
Q psy6266 84 LSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRLVFLNAGFT------------EAREYRYWN-PE--KRAV- 141 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~~~~~~g~~------------~~~~~~~~~-~~--~~~~- 141 (218)
.+|++|...++++.+... ++ .+|+...-+|-......-.+... .+..+|... .. .+..
T Consensus 116 ~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (445)
T PRK09221 116 NSGSESVDTALKIALAYHRARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKG 195 (445)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCC
Confidence 888898888777544331 12 46777777776543211111110 111122100 00 0000
Q ss_pred -------cHHHHHHHHhcCCCCc--EEEEcccC------CCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 142 -------DFTGMYEDLVNAPDNS--VIILHACA------HNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 142 -------d~~~~~~~l~~~~~~~--~iil~~~p------~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..+.+++.++...... .+++-+-. .-|.|. +|.++|++|++.+|.| |+..|+
T Consensus 196 ~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~llI~D--EV~tG~ 264 (445)
T PRK09221 196 QPEHGAELADDLERLVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFD--EVITGF 264 (445)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe--ehhhCC
Confidence 1234455554321122 23332211 123444 8999999999999999 998876
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.36 Score=43.84 Aligned_cols=179 Identities=9% Similarity=0.008 Sum_probs=87.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc-CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE-YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~-Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| ...|.|.+|.++.+++...... +.++. .+..+++++.. ... ..-+++ .-
T Consensus 51 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~ql~~~~~~~~~~~~~~----~~~~lAe~L~~-~~p--~~~~~v--~f 119 (453)
T PRK06943 51 RDGRRYLDAISSWWVNLFG--HANPRINAALKDQLDTLEHAMLAGCTHE----PAIELAERLAA-LTG--GTLGHA--FF 119 (453)
T ss_pred CCCCEEEEcchHHHHhcCC--CCCHHHHHHHHHHHHhcCCccccccCCH----HHHHHHHHHHH-hCC--CCCCEE--EE
Confidence 4567777776553323345 4567777776665543110111 12222 23334444432 110 011344 46
Q ss_pred eccChhHHHHHHHHHHHh-----cCC-CeEEecCCCchhHHH-HHHHhCCC-----------cceeEeccCCcC--cc--
Q psy6266 83 TLSGTGALRVGAEFLHRI-----LNY-TTFYYSKPTWENHRL-VFLNAGFT-----------EAREYRYWNPEK--RA-- 140 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l-----~~g-d~V~i~~P~y~~y~~-~~~~~g~~-----------~~~~~~~~~~~~--~~-- 140 (218)
+.+|++|...++++.... .+| .+|+...-+|-.... .+...|-. .+..++...... ..
T Consensus 120 ~~sGseAve~AlKlA~~~~~~rg~~~r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 199 (453)
T PRK06943 120 ASDGASAVEIALKMSFHAWRNRGRGDKREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGET 199 (453)
T ss_pred eCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCC
Confidence 788889888887754221 123 567777777766431 11111110 011122110000 00
Q ss_pred ------ccHHHHHHHHhcCCCC-cEEEEcccCCC-------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 141 ------VDFTGMYEDLVNAPDN-SVIILHACAHN-------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 141 ------~d~~~~~~~l~~~~~~-~~iil~~~p~N-------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
-+++.+++.+.+.... ..+++-+-.+. |.|. .+.++|++|++.+|.| |+..|+
T Consensus 200 ~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI~D--EV~TG~ 268 (453)
T PRK06943 200 AADVAARALADVRRLFAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIAD--EIAVGC 268 (453)
T ss_pred HHHHHHHHHHHHHHHHHhCCCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEEee--chhhCC
Confidence 1235556666432222 22232210022 3343 7999999999999999 999887
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.73 Score=41.79 Aligned_cols=179 Identities=11% Similarity=0.034 Sum_probs=88.0
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+.+...... +.+..+++++.. .. + -..+++ .-+
T Consensus 28 ~dG~~ylD~~~g~~~~~lG--h~hp~v~~Ai~~ql~~--~~~~~~~~~~~-~~~~~lae~L~~-~~-p-~~~~~v--~f~ 97 (447)
T PRK06917 28 QNGNKYFDGSSGAVTAGIG--HGVKEIADAIKEQAEE--VSFVYRSQFTS-EPAEKLAKKLSD-LS-P-GDLNWS--FFV 97 (447)
T ss_pred CCCCEEEECchhHHhccCC--CCCHHHHHHHHHHHhh--CcCccccccCC-HHHHHHHHHHHH-hC-C-CCCCEE--EEe
Confidence 4577777876554323345 4477788887665543 22222111111 233344444432 11 0 011343 467
Q ss_pred ccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHHH-HHHhCCCcc------------eeEeccCCcCc--c--
Q psy6266 84 LSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRLV-FLNAGFTEA------------REYRYWNPEKR--A-- 140 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~~-~~~~g~~~~------------~~~~~~~~~~~--~-- 140 (218)
.+|++|...++++..... +| +.|+...-+|-..... +...+. .. ..++....... .
T Consensus 98 ~sGsEAve~AlklAr~~~~~rg~t~r~~ii~~~~~yHG~t~~als~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 176 (447)
T PRK06917 98 NSGSEANETAMKIAIQHFQERGIQGKHKILSRWMSYHGITMGALSMSGH-PLRRQRFVSLLEDYPTISAPYCYRCPVQKV 176 (447)
T ss_pred CChHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHHhcCC-ccccccCCCCCCCCeEeCCCcccccccCCC
Confidence 788888888777543221 33 5677777777664432 222221 10 11110000000 0
Q ss_pred ------ccHHHHHHHHhcCCCC--cEEEEcccCCC-------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 141 ------VDFTGMYEDLVNAPDN--SVIILHACAHN-------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 141 ------~d~~~~~~~l~~~~~~--~~iil~~~p~N-------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
-+.+.+++.+.+.... ..+++=+-..| |-+. .|.++|++|++.+|.| |+..|+
T Consensus 177 ~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI~D--Ev~tGf 246 (447)
T PRK06917 177 YPTCQLACATELETAIERIGAEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFIAD--EVMTGL 246 (447)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEEEe--chhhCc
Confidence 0234455555432212 23333221111 3333 7999999999999999 998876
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.85 Score=41.62 Aligned_cols=179 Identities=13% Similarity=0.083 Sum_probs=85.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+...... ..+.+..+++++.. .. + ...+++ .-+
T Consensus 44 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~ql~~--l~~~~~~~~-~~~~~~~lae~L~~-~~-p-~~~~~v--~f~ 113 (466)
T PRK07030 44 FEGKRYLDAVSSWWVNVFG--HANPRINQRIKDQVDQ--LEHVILAGF-SHEPVIELSERLVK-IT-P-PGLSRC--FYA 113 (466)
T ss_pred CCCCEEEEcchhHHhhcCC--CCCHHHHHHHHHHHHh--cCCcccccc-CCHHHHHHHHHHHH-hC-C-CCcCEE--EEe
Confidence 4566667775553222334 3456777776665543 111111111 11233334444422 11 0 112344 467
Q ss_pred ccChhHHHHHHHHHHHh-----cCC-CeEEecCCCchhHHHHHHHhCCCc------------ceeEeccCCc--Ccc---
Q psy6266 84 LSGTGALRVGAEFLHRI-----LNY-TTFYYSKPTWENHRLVFLNAGFTE------------AREYRYWNPE--KRA--- 140 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l-----~~g-d~V~i~~P~y~~y~~~~~~~g~~~------------~~~~~~~~~~--~~~--- 140 (218)
.+|++|...++++.+.. .+| .+|+...-+|-.........+... +..+|..... ..+
T Consensus 114 ~sGsEAve~AlKlAr~~~~~~g~t~r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~ 193 (466)
T PRK07030 114 DNGSSAIEVALKMSFHYWRNRGKPRKKRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSW 193 (466)
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCH
Confidence 88889888887754332 123 467777777765432222221101 1112110000 000
Q ss_pred -----ccHHHHHHHHhcCCCCcEEEEcccC---------CCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 141 -----VDFTGMYEDLVNAPDNSVIILHACA---------HNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 141 -----~d~~~~~~~l~~~~~~~~iil~~~p---------~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
-+++.+++.+.+....-..++. -| .-|.|. .|.++|++|++.+|.| |+..|+
T Consensus 194 ~~~~~~~l~~le~~~~~~~~~iAAvi~-EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI~D--EV~TGf 261 (466)
T PRK07030 194 EEHSRRMFAHMEQTLAEHHDEIAAVIV-EPLIQGAGGMRMYHPVYLKLLREACDRYGVHLIHD--EIAVGF 261 (466)
T ss_pred HHHHHHHHHHHHHHHHhCCCceEEEEE-ecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEe--ehhhCc
Confidence 0234455556432222122221 22 123344 7999999999999999 998887
|
|
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.13 Score=45.41 Aligned_cols=143 Identities=13% Similarity=0.023 Sum_probs=70.8
Q ss_pred ccCchH-HHHHHHHHhhcCCCCccCcC-CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhc
Q psy6266 24 PWVLPV-VRQAEKELAADDSLNHEYLP-VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRIL 101 (218)
Q Consensus 24 ~~~~~~-v~~a~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~ 101 (218)
..+++. |.+|+.+-... ..|+-.. ..=+.+.|+.+++++ + . -++++|. +.+.++|+++..++..+ +.
T Consensus 21 ~~~~~~~v~~a~~~~~~~--~~hr~~~f~~~~~~~r~~l~~l~-~-~----~~~~~v~-~~~gs~T~~~~~~~~~l--~~ 89 (378)
T PRK03080 21 CKKRPGWQLEALADALLG--RSHRQKPVKALLKRVIEGTRELL-S-L----PEGYEVG-IVPGSDTGAWEMALWSL--LG 89 (378)
T ss_pred cCCChHHHHHHHHhhhcc--cCcCCHHHHHHHHHHHHHHHHHh-C-C----CCCceEE-EECCchHHHHHHHHHhc--CC
Confidence 344555 88887643311 1232111 112344555555443 3 1 1223442 33448899999988766 55
Q ss_pred C-CCeEEecCCCchhHHHH-H-HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--HHHHH
Q psy6266 102 N-YTTFYYSKPTWENHRLV-F-LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--QVAHM 176 (218)
Q Consensus 102 ~-gd~V~i~~P~y~~y~~~-~-~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--~l~~l 176 (218)
+ ++.|+. +=.|+..... + +..|+.+++.++. +....+|++. ++. .+.+.+ ....|.||. .+.++
T Consensus 90 ~~~~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~--~~g~~~d~~~----i~~--~~~V~~--~h~~t~tG~~~pi~~I 158 (378)
T PRK03080 90 ARRVDHLA-WESFGSKWATDVVKQLKLEDPRVLEA--DYGSLPDLSA----VDF--DRDVVF--TWNGTTTGVRVPVARW 158 (378)
T ss_pred CCcceEEE-eCHHHHHHHHHHHhhcCCCCceEecc--CCCCCCCHhh----cCC--CCCEEE--EecCCccceeccchhh
Confidence 4 455554 3345542221 2 3345423445543 1223446554 322 222323 345788898 33333
Q ss_pred h-hcCeEEEeeCC
Q psy6266 177 V-DKHHVYLLRSG 188 (218)
Q Consensus 177 ~-~~~~i~ii~D~ 188 (218)
+ ++++++++.|+
T Consensus 159 ~~~~~g~~~vVDa 171 (378)
T PRK03080 159 IGADREGLTICDA 171 (378)
T ss_pred ccccCCCeEEEec
Confidence 3 56789999994
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.53 Score=42.61 Aligned_cols=102 Identities=13% Similarity=0.067 Sum_probs=54.8
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++. .. |... ... +.+..+++++.. ... ...+++
T Consensus 26 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~av~~ql~~--~~--~~~~~~~~~-~~~~~lae~L~~-~~p--~~~~~v-- 93 (443)
T PRK07483 26 DATGKRYLDASGGAAVSCLG--HSHPRVIAAIHAQIDR--LA--YAHTSFFTT-EPAEALADRLVA-AAP--AGLEHV-- 93 (443)
T ss_pred eCCCCEEEEcCccHhhhccC--CCCHHHHHHHHHHHHh--cc--CccccccCC-HHHHHHHHHHHH-hCC--CCCCEE--
Confidence 34677778887664444455 4567788887766643 11 1111 112 223344555532 110 011454
Q ss_pred EEeccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhH
Q psy6266 81 VQTLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENH 116 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y 116 (218)
.-+.+|++|...++++.+... ++ .+|+...-+|-..
T Consensus 94 ~f~~sGsEAve~AlklAr~~~~~~g~~~r~~Ii~~~~~YHG~ 135 (443)
T PRK07483 94 YFVSGGSEAVEAALKLARQYFVEIGQPQRRHFIARRQSYHGN 135 (443)
T ss_pred EEcCCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence 467888998888877654431 34 3566666666554
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.62 Score=42.39 Aligned_cols=104 Identities=9% Similarity=-0.045 Sum_probs=55.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.+++ ..+........-+.+..+++++.. ... ..-+++ .-+
T Consensus 45 ~dG~~ylD~~~g~~~~~lG--h~~p~i~~Ai~~q~~~--~~~~~~~~~~~~~~~~~lae~L~~-~~p--~~~~~v--~f~ 115 (460)
T PRK06105 45 DAGKRYIEGMAGLWSVALG--FSEQRLVEAAARQMKK--LPFYHTFSHKSHGPVIDLAEKLVA-MAP--VPMSKV--FFT 115 (460)
T ss_pred CCCCEEEEcchhHHhccCC--CCCHHHHHHHHHHHHh--CCCeecccccCCHHHHHHHHHHHH-hCC--CCCCEE--EEe
Confidence 5677888887664333455 4567788887766643 111011111122333334555433 110 112344 468
Q ss_pred ccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhH
Q psy6266 84 LSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENH 116 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y 116 (218)
.+|++|...++++..... ++ .+|+...-+|-..
T Consensus 116 ~SGseAve~AlKlar~~~~~~g~t~r~~il~~~~~yHG~ 154 (460)
T PRK06105 116 NSGSEANDTVVKLVWYYNNALGRPEKKKIISRQRGYHGV 154 (460)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCccCCc
Confidence 889999988887643221 23 4677666666553
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.66 Score=42.00 Aligned_cols=180 Identities=12% Similarity=0.058 Sum_probs=87.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.+++ ..+........+ .+..+++++.. .- + -..+++ .-+
T Consensus 43 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~ql~~--l~~~~~~~~~~~-~~~~la~~l~~-~~-p-~~~~~v--~f~ 112 (442)
T PRK13360 43 HDGRRVLDGTAGLWCVNAG--HGRPEIVEAVRAQAGE--LDYAPAFQMGHP-KAFELANRIAE-IA-P-GGLNHV--FFT 112 (442)
T ss_pred CCCCEEEECchhHHHhccC--CCCHHHHHHHHHHHHh--CCCcccCCcCCH-HHHHHHHHHHH-hC-C-CCCCEE--EEe
Confidence 4567777775553222334 4567778777665543 111111111222 23344444432 11 0 011344 477
Q ss_pred ccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHH-HHHHhCC-----------CcceeEeccCC-cC--ccc-
Q psy6266 84 LSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRL-VFLNAGF-----------TEAREYRYWNP-EK--RAV- 141 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~-~~~~~g~-----------~~~~~~~~~~~-~~--~~~- 141 (218)
.+|++|...++++.+... ++ .+|+...-+|-.... .+...|. ..+..+|.... .. +..
T Consensus 113 ~sGseA~e~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 192 (442)
T PRK13360 113 NSGSESVDTALKIALAYHRARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKG 192 (442)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCC
Confidence 888898888877544331 22 468877777766432 1111111 01111222100 00 000
Q ss_pred -------cHHHHHHHHhcCCCCc--EEEEcccC------CCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 142 -------DFTGMYEDLVNAPDNS--VIILHACA------HNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 142 -------d~~~~~~~l~~~~~~~--~iil~~~p------~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..+.+++.+....+.. .+++-+-. .-|.|. .|.++|++|++++|.| |+..|+
T Consensus 193 ~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~llI~D--Ev~tG~ 261 (442)
T PRK13360 193 QPEHGAELADELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILLIFD--EVITGF 261 (442)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--chhhCC
Confidence 1334555554321122 23322211 224444 8999999999999999 898776
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.59 Score=42.36 Aligned_cols=105 Identities=12% Similarity=0.082 Sum_probs=53.2
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCC-cHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLG-LESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G-~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++. ..+ +....| .-+.+..+++++.. .-.+ -..+++ .
T Consensus 38 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~ql~~--~~~-~~~~~~~~~~~~~~lae~L~~-~~~~-~~~~~v--~ 108 (449)
T PRK07481 38 DIDGKKLLDGVGGLWNVNVG--HNREEVKEAIVRQLDE--LEY-YSTFDGTTHPRAIELSYELID-MFAP-EGMRRV--F 108 (449)
T ss_pred eCCCCEEEECchhHHhhcCC--CCCHHHHHHHHHHHHh--ccc-eecccccCCHHHHHHHHHHHH-hcCC-CCCCEE--E
Confidence 35677777776553333444 4456777776665543 121 111111 11223334444432 1100 012344 4
Q ss_pred EeccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhH
Q psy6266 82 QTLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENH 116 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y 116 (218)
-+.+|++|...++++-+... +| .+|+...=+|-..
T Consensus 109 f~~sGsEAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~ 149 (449)
T PRK07481 109 FSSGGSDSVETALKLARQYWKVRGQPERTKFISLKQGYHGT 149 (449)
T ss_pred EcCchHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCc
Confidence 67888898888877544321 23 4677777776664
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.46 Score=42.85 Aligned_cols=178 Identities=11% Similarity=0.014 Sum_probs=86.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC-ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN-HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| .-.|.|.+|.++.+++.... ..+.......+|-+.+++..- ...+++ .-
T Consensus 41 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p-------~~~~~v--~f 109 (429)
T PRK06173 41 KDGRRLIDGMSSWWAALHG--YNHPRLNAAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILP-------PSLNKI--FF 109 (429)
T ss_pred CCCCEEEEccchHHhccCC--CCCHHHHHHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCC-------CCcCEE--EE
Confidence 4566666665543222334 34577777766655331101 112223333444444443321 112454 47
Q ss_pred eccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHH-HHHHhCC------------CcceeEeccCC---cCc-
Q psy6266 83 TLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRL-VFLNAGF------------TEAREYRYWNP---EKR- 139 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~-~~~~~g~------------~~~~~~~~~~~---~~~- 139 (218)
+.+|++|...++++.+... +| ..|+...-+|-.... .+...+. ..+..+|.... +.+
T Consensus 110 ~~sGseAve~AlklAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 189 (429)
T PRK06173 110 ADSGSVAVEVAMKMALQYQQAKGEVQRTKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWN 189 (429)
T ss_pred eCCchHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHH
Confidence 7888898888777644331 33 467777777766321 1111110 00111221000 000
Q ss_pred cccHHHHHHHHhcCCCCcEEEEcccC--CC-------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 140 AVDFTGMYEDLVNAPDNSVIILHACA--HN-------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 140 ~~d~~~~~~~l~~~~~~~~iil~~~p--~N-------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.-+++.+++.+.....+-..++. -| +. |.+. ++.++|++|++.+|.| |+..|+
T Consensus 190 ~~~l~~l~~~i~~~~~~iAAvi~-EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~D--Ev~tG~ 253 (429)
T PRK06173 190 DEAIEPLQDLLEQKGDEIAALIL-EPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFD--EIATGF 253 (429)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEE-cchhhccCCcccCCHHHHHHHHHHHHHcCCeEEec--chhcCC
Confidence 01355566666532222222222 23 22 3344 8999999999999999 888876
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.49 Score=41.41 Aligned_cols=99 Identities=9% Similarity=0.027 Sum_probs=56.9
Q ss_pred EEecc-ChhHHHHHHHHHHHhcCCCeEEecC-CCchhHH-HHHHHhCCCcceeEec--cCCcCccccHHHHHHHHhcCCC
Q psy6266 81 VQTLS-GTGALRVGAEFLHRILNYTTFYYSK-PTWENHR-LVFLNAGFTEAREYRY--WNPEKRAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 81 ~~t~G-~~~al~~~~~~l~~l~~gd~V~i~~-P~y~~y~-~~~~~~g~~~~~~~~~--~~~~~~~~d~~~~~~~l~~~~~ 155 (218)
+.+.| +|+|+..++..+ +.+||++++.. -.|+... .+.+..|+ +..+.. +.+....++++.+. +. +
T Consensus 59 ~~~~gsgT~a~ea~~~nl--~~~~~~~l~i~~G~fg~r~~~~a~~~g~--~~~~~~~~~~~~~~~~~~~~~~--~~---~ 129 (349)
T TIGR01364 59 LFLQGGATGQFAAVPLNL--LAEGKVADYIVTGAWSKKAAKEAKKYGV--VNVVASGKEGNYTKIPDPSTWE--IS---E 129 (349)
T ss_pred EEEcCCchHHHHHHHHhc--CCCCCeEEEEECCHHHHHHHHHHHHhCC--cEEEeccccCCCCCCCCHHhcC--CC---C
Confidence 46655 999999988765 55888877664 4454433 35566665 333332 10111233554333 11 2
Q ss_pred CcEEEEcccCCCCcHHHHHHHhhcCeEEEeeCC
Q psy6266 156 NSVIILHACAHNPTAQQVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D~ 188 (218)
+..++...-..|.||....++++.++++++.|+
T Consensus 130 ~~~~v~~th~ETstGv~~~~l~~~~~~l~iVDa 162 (349)
T TIGR01364 130 DAAYVHYCANETIHGVEFRELPDVKNAPLVADM 162 (349)
T ss_pred CCCEEEEcCCCCcccEecceecccCCCeEEEEc
Confidence 222333233467777765578888899999994
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.69 Score=41.87 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 172 QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 172 ~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.|.++|++|++.+|.| |++.||
T Consensus 250 ~lr~lc~~~g~llI~D--EV~tGf 271 (443)
T PRK08297 250 AMRELCDEHDALLIFD--EVQTGV 271 (443)
T ss_pred HHHHHHHHcCCEEEEe--chhhcc
Confidence 8999999999999999 999987
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.72 Score=42.07 Aligned_cols=104 Identities=14% Similarity=0.091 Sum_probs=52.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCC-CcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVL-GLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~-G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+ .+... -.-+.+..+++++.. .- + -..+++ .-
T Consensus 48 ~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~q~~~--~~~-~~~~~~~~~~~~~~lae~L~~-~~-p-~~~~~v--~f 117 (466)
T PRK07036 48 ADGRRYLDGIGGMWCVNVG--YGREEMADAIADQARR--LPY-YTPFGDMTNAPAAELAAKLAE-LA-P-GDLNHV--FL 117 (466)
T ss_pred CCCCEEEECcccHHhhcCC--CCCHHHHHHHHHHHHh--Ccc-cccccccCCHHHHHHHHHHHH-hC-C-CCcCEE--EE
Confidence 4566667765553222334 3467788776665532 111 11110 112333445555532 11 0 112344 47
Q ss_pred eccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHH
Q psy6266 83 TLSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHR 117 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~ 117 (218)
+.+|++|...++++.+... ++ .+|+...-+|-...
T Consensus 118 ~~sGseAve~AlklAr~~~~~~g~t~r~~Ii~~~~~YHG~t 158 (466)
T PRK07036 118 TTGGSTAVDSALRFVHYYFNVRGRPAKKHIITRGDAYHGST 158 (466)
T ss_pred eCCchHHHHHHHHHHHHHHHhcCCCCccEEEEEcCccCCcc
Confidence 7888898888777543321 22 56777777776643
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.88 Score=39.14 Aligned_cols=107 Identities=13% Similarity=0.180 Sum_probs=65.4
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEec--CCCchhHHHHH----------HHhCCCcceeEeccCCcCccccHHHHHH
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYS--KPTWENHRLVF----------LNAGFTEAREYRYWNPEKRAVDFTGMYE 148 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~--~P~y~~y~~~~----------~~~g~~~~~~~~~~~~~~~~~d~~~~~~ 148 (218)
.+...++.|+..++.-+ |.|||+.+.. .|+ -....++ +-.|. +-+.+|+. . ...+|++.+.+
T Consensus 87 pq~isGTHAI~~aLfg~--LRpgDell~i~G~PY-DTLeevIG~rg~~~gSL~dfgi-~Y~~v~Lt-~-~gkiD~~~v~~ 160 (416)
T COG4100 87 PQIISGTHAIACALFGI--LRPGDELLYITGSPY-DTLEEVIGLRGEGQGSLKDFGI-KYKAVPLT-A-DGKIDIQAVKT 160 (416)
T ss_pred eeeecchhHHHHHHHhc--cCCCCeEEEecCCcc-hhHHHHhccCCCCcccHHHhCc-ceeecccc-c-CCcccHHHHHH
Confidence 46678899999887765 7899998765 343 2222222 23344 44555553 2 35789999999
Q ss_pred HHhcCCCCcEEEEcccC---CCCcHH-----HHHHHhhc--CeEEEeeCCceeeccCCC
Q psy6266 149 DLVNAPDNSVIILHACA---HNPTAQ-----QVAHMVDK--HHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 149 ~l~~~~~~~~iil~~~p---~NPTG~-----~l~~l~~~--~~i~ii~D~r~~y~~l~~ 197 (218)
.+.. ..+.+.+|-|+ .-|+=. ++..+.|+ -++.++.| -+|.+|.-
T Consensus 161 ~i~~--~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~ivFVD--NCYGEFvE 215 (416)
T COG4100 161 AISD--RTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVIVFVD--NCYGEFVE 215 (416)
T ss_pred hcCc--cceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEEEEEe--ccchhhhh
Confidence 8863 22344555332 223221 44455554 47899999 88887754
|
|
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.013 Score=51.30 Aligned_cols=147 Identities=16% Similarity=0.112 Sum_probs=13.5
Q ss_pred CCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcC-CCceEEEEeccChhHHHHHHHHHHHh
Q psy6266 22 CKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLR-EGRAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 22 ~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-~~~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
|.-+..+.+.++..++... ..+.+|--..|-..=|..-.+.+.. . +. .+. .+++.....|+.+++..+
T Consensus 14 GRs~l~~~a~~a~~~~a~~-Y~nLE~dl~~G~Rg~R~~~v~~ll~-~----ltgAea--A~VvNnnaAAv~L~l~~l--- 82 (367)
T PF03841_consen 14 GRSPLSEEAIEAVAEVASG-YSNLEYDLETGKRGSRYAHVEELLC-E----LTGAEA--ALVVNNNAAAVLLALNTL--- 82 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccc-ccccccccccccccccccccccccc-c----cccccc--cccccccccccccccccc---
Confidence 3345666677666555432 1233454444433333222222211 0 11 122 346667667777776655
Q ss_pred cCCCeEEecCCCchh------HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCC-----c
Q psy6266 101 LNYTTFYYSKPTWEN------HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNP-----T 169 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~------y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NP-----T 169 (218)
-+|.+|+++.=--.. ...+++..|+ +.+.+-.. .....+..+++|.+ ++.+++-.-++|. |
T Consensus 83 a~~~EvIvsRGelVeiGgsFRip~vm~~sGa-~lvEVGtt----N~t~~~Dye~AI~e---~Ta~ll~Vh~Sn~~i~GFt 154 (367)
T PF03841_consen 83 AKGKEVIVSRGELVEIGGSFRIPDVMRQSGA-RLVEVGTT----NRTHLSDYEKAITE---NTAALLKVHTSNFRIQGFT 154 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc-cccccccc----cccccccccccccc---ccccccccccccccccccc
Confidence 358888877433222 2356777888 78887542 23345566677753 3433332223343 3
Q ss_pred HH----HHHHHhhcCeEEEeeC
Q psy6266 170 AQ----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 170 G~----~l~~l~~~~~i~ii~D 187 (218)
+. ++++++++|++.++.|
T Consensus 155 ~~~~~~el~~la~~~~lp~i~D 176 (367)
T PF03841_consen 155 GEVSLEELAELAKEHGLPVIVD 176 (367)
T ss_dssp ------HHHHHHHHHT--EEEE
T ss_pred ccccHHHHHHHHhhcCCcEEEE
Confidence 33 8999999999999999
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=94.42 E-value=1.1 Score=40.40 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=21.1
Q ss_pred HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 172 QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 172 ~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
.|.++|++|++.+|.| |++.|+-
T Consensus 243 ~l~~lc~~~g~llI~D--EV~tG~G 265 (431)
T TIGR03251 243 AMRALCDEHDALLIFD--EVQTGVG 265 (431)
T ss_pred HHHHHHHHcCCEEEEe--cchhccC
Confidence 7999999999999999 9998863
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=93.98 E-value=1.4 Score=40.27 Aligned_cols=183 Identities=12% Similarity=0.078 Sum_probs=89.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHH-hhcCCCCccC-cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKEL-AADDSLNHEY-LPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~-~~~~~~~~~Y-~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..|...||+.-|.....-| ...|.|.+|.++. ..+ ...+.. ....-..+|-+.+.+.+.. .. + -..+++ .
T Consensus 55 ~dG~~ylD~~sg~~~~~lG--h~~p~i~~Ai~~q~~~~-~l~~~~~~~~~~~~~la~~l~~~l~~-~~-p-~~~~~v--~ 126 (464)
T TIGR00699 55 VDGNRLLDLYSQISSIPIG--YNNPALLKAAQSPEMAT-TLINRPALGNFPSKDWAKILKEGILK-VA-P-KGQDQV--W 126 (464)
T ss_pred CCCCEEEEccCCHhhhcCC--CCCHHHHHHHHHHHHHH-hhcccccCCcHHHHHHHHHHHHhHHh-hC-C-CCcCEE--E
Confidence 5677888887775444455 4567777776652 222 111111 1111122333333321221 11 0 011344 5
Q ss_pred EeccChhHHHHHHHHHHHhc------------------------CCC---eEEecCCCchhHHHHHHHhCCCcc------
Q psy6266 82 QTLSGTGALRVGAEFLHRIL------------------------NYT---TFYYSKPTWENHRLVFLNAGFTEA------ 128 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~------------------------~gd---~V~i~~P~y~~y~~~~~~~g~~~~------ 128 (218)
-+.+|++|...++++..... +|. +|+...-+|-..............
T Consensus 127 f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~ 206 (464)
T TIGR00699 127 TGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDI 206 (464)
T ss_pred EeCCcHHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCC
Confidence 78889999888887543220 121 688888887665432222211011
Q ss_pred -----eeEeccC---------Cc--C-ccccHHHHHHHHhcCCCC-cEEEEcccCCC------CcHH--HHHHHhhcCeE
Q psy6266 129 -----REYRYWN---------PE--K-RAVDFTGMYEDLVNAPDN-SVIILHACAHN------PTAQ--QVAHMVDKHHV 182 (218)
Q Consensus 129 -----~~~~~~~---------~~--~-~~~d~~~~~~~l~~~~~~-~~iil~~~p~N------PTG~--~l~~l~~~~~i 182 (218)
..+|+.. +. . ..-+++.+++.+++.... ..+++-+-..+ |.+. +|.++|++|++
T Consensus 207 ~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~ 286 (464)
T TIGR00699 207 PAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLEEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNV 286 (464)
T ss_pred CCCCceecCCCCcccccccccccchhHHHHHHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 0111100 00 0 001344556666532222 22333222222 3343 89999999999
Q ss_pred EEeeCCceeeccCC
Q psy6266 183 YLLRSGRINMCGLT 196 (218)
Q Consensus 183 ~ii~D~r~~y~~l~ 196 (218)
.+|.| |+..|+-
T Consensus 287 lLI~D--EV~tGfG 298 (464)
T TIGR00699 287 AFIVD--EVQTGVG 298 (464)
T ss_pred EEEEe--eeeeCCC
Confidence 99999 9988873
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.36 Score=42.39 Aligned_cols=144 Identities=12% Similarity=-0.120 Sum_probs=73.7
Q ss_pred CccCchHHHHHHHHHhhc-CCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH
Q psy6266 23 KPWVLPVVRQAEKELAAD-DSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR 99 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~-~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~ 99 (218)
...+++.|.+|+.+.... ..-.| ..+ ..=+.+.|+.+++++.. .++.+| ++.+.++|.++..++..+
T Consensus 11 P~~~~~~v~~a~~~~~~~~~~~~h-r~~~f~~~~~~~r~~l~~l~~~------~~~~~v-~f~~gs~T~a~~~~~~~l-- 80 (361)
T TIGR01366 11 PSKVRLEQLQALTTTAASLFGTSH-RQAPVKNLVGRVREGLAELFSL------PDGYEV-ILGNGGATAFWDAATFGL-- 80 (361)
T ss_pred CcCCCHHHHHHHHhcCccccccCc-CChHHHHHHHHHHHHHHHHhCC------CCCceE-EEECCchhHHHHHHHHhc--
Confidence 356788899886532100 00011 111 22345667777666532 112344 234456999999888765
Q ss_pred hcCCCeEEecCCCchhHHH-HHHHh--CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--HHH
Q psy6266 100 ILNYTTFYYSKPTWENHRL-VFLNA--GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--QVA 174 (218)
Q Consensus 100 l~~gd~V~i~~P~y~~y~~-~~~~~--g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--~l~ 174 (218)
+. .+..++..=.|+.... ..+.. +. ++..++.. ....++. .+ .+++.++..+-..|-||. -+.
T Consensus 81 ~~-~~~l~i~~G~~~~~~~~~a~~~~~~~-~~~~~~~~--~~~~~~~-----~~---~~~~~lV~~~h~et~tG~~~pi~ 148 (361)
T TIGR01366 81 IE-KKSLHLSFGEFSSKFAKAVKLAPWLG-EPIIVTAD--PGSAPEP-----QA---DPGVDVIAWAHNETSTGVAVPVR 148 (361)
T ss_pred cc-ccccEEecCHHHHHHHHHHHhhhccC-CceEEecC--CCCCCCC-----cc---CCCCCEEEEcccCCccceecccc
Confidence 32 3444454444543222 22221 23 45555431 1112222 11 234444544556788887 466
Q ss_pred HHhhcCeEEEeeCC
Q psy6266 175 HMVDKHHVYLLRSG 188 (218)
Q Consensus 175 ~l~~~~~i~ii~D~ 188 (218)
+++++++++++.|.
T Consensus 149 ~I~~~~g~~~iVDa 162 (361)
T TIGR01366 149 RPEGSDDALVVIDA 162 (361)
T ss_pred cccccCCCeEEEEc
Confidence 66788999999994
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.12 Score=46.32 Aligned_cols=43 Identities=44% Similarity=0.743 Sum_probs=39.1
Q ss_pred HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHHcC
Q psy6266 172 QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214 (218)
Q Consensus 172 ~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~~~ 214 (218)
....|+++++|+++.+||+++.++..+++++.+++|+++++++
T Consensus 380 ~~~~Ll~~~~V~v~~~~Ri~~~~~~~~~i~~~~~~i~~~~~~~ 422 (423)
T PLN02397 380 QVDRMTKEYHIYMTRDGRISMAGLSSKNVPYLADAIHAVVTNA 422 (423)
T ss_pred HHHHHHHhCCEEECCCCeEEEeeCCHHHHHHHHHHHHHHHhcc
Confidence 5567778999999999999999999999999999999999764
|
|
| >KOG1401|consensus | Back alignment and domain information |
|---|
Probab=92.92 E-value=6.1 Score=35.31 Aligned_cols=182 Identities=16% Similarity=0.077 Sum_probs=96.0
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
+-.+|.-.||+.-|....--| +.-|.|.+|+.+-... ..|.-.+.--.+ ..++...+... .+. -..++| .
T Consensus 51 ~D~~g~EyiD~~ssw~~~~~G--hanpev~ral~~q~~k--~~hs~~~~~t~e-av~l~~~l~~~-~~~--~~~~rv--f 120 (433)
T KOG1401|consen 51 FDPDGKEYIDFTSSWAVTILG--HANPEVARALAEQAKK--LGHSSNGYFTLE-AVELEEVLSAV-LGK--GSAERV--F 120 (433)
T ss_pred ecCCcceeeeeccceeccccC--CCCHHHHHHHHHHHhh--heeccCccccHH-HHHHHHHHHhc-ccC--CCccEE--E
Confidence 446788889988887655555 4466777765543322 223222222122 23322222211 111 145666 4
Q ss_pred EeccChhHHHHHHHHHHHhcCCCe------EEecCCCchhHHH-HHHHhCCCcceeEecc--CCcC-c--cccHHHHHHH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTT------FYYSKPTWENHRL-VFLNAGFTEAREYRYW--NPEK-R--AVDFTGMYED 149 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~------V~i~~P~y~~y~~-~~~~~g~~~~~~~~~~--~~~~-~--~~d~~~~~~~ 149 (218)
-...|++|...++.+-++...-+. ++-..=+|..... .+...+- .....|.. .++. . --|...+++.
T Consensus 121 f~nsGTeAne~ALK~Ark~~~~~~~~~~t~~Iaf~nsyHG~tlgals~~~~-s~y~~~~~p~~p~v~~~~ynd~t~l~k~ 199 (433)
T KOG1401|consen 121 FCNSGTEANETALKFARKFTGKKHPEKKTKFIAFENSYHGRTLGALSVTGN-SKYGLPFDPIAPDVVTAEYNDSTALEKL 199 (433)
T ss_pred EecCCcHHHHHHHHHHHHhhcccCCccceeEEEEecCcCCcchhHHHhhcc-cccCCCCCCCCCceeecccCCHHHHHHH
Confidence 778889988887776444332222 6666667666443 2332232 23333220 0110 0 1177888888
Q ss_pred HhcCCC-CcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 150 LVNAPD-NSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 150 l~~~~~-~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
++.... -..+|+-+ -+.--|. .|..+|+++++.+|.| |+..||..
T Consensus 200 ~~~h~~~IaAVIvEP-iqGaGG~~p~~peFl~~L~k~C~~~~vl~I~D--EV~tG~gR 254 (433)
T KOG1401|consen 200 FESHKGEIAAVIVEP-IQGAGGIIPADPEFLIGLRKECDDNGVLLIFD--EVQTGLGR 254 (433)
T ss_pred HHhCCCceEEEEEec-ccCCCCcccCCHHHHHHHHHHHhhcCceEEee--hhhhCccc
Confidence 876521 12334322 1111111 5889999999999999 99998643
|
|
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=2.3 Score=42.72 Aligned_cols=99 Identities=15% Similarity=0.040 Sum_probs=53.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|+ ..-| ...|.|.+|.++.++.......| ......+|-+.+++..-+ ..+++ .-+
T Consensus 621 ~dG~~ylD~~~g~--~~lG--H~hp~v~~Ai~~q~~~l~~~~~~-~~~~~~~lAe~L~~~~p~-------~~~~v--~f~ 686 (1013)
T PRK06148 621 NRGRAYLDCFNNV--CHVG--HAHPRVVAAAARQAARLNTNTRY-LHDAIVAYAERLTATLPD-------GLTVA--FFV 686 (1013)
T ss_pred CCCCEEEEcccCh--hhcC--CCCHHHHHHHHHHHhhcCCcCCc-CCHHHHHHHHHHHHhCCC-------CcCEE--EEe
Confidence 4567777776664 2345 45677887766655331112222 233333444433332211 11343 467
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENH 116 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y 116 (218)
.+|++|...++++-+.....+.|+..+-+|-..
T Consensus 687 nSGsEA~e~AlklAr~~tGr~~ii~~~~~YHG~ 719 (1013)
T PRK06148 687 NSGSEANSLALRLARAHTGQRDAIVLDHAYHGT 719 (1013)
T ss_pred CCcHHHHHHHHHHHHHhcCCCeEEEEcCCccCC
Confidence 888999988888654433345677777776654
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.45 E-value=1.5 Score=39.81 Aligned_cols=100 Identities=11% Similarity=0.049 Sum_probs=51.7
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC--CCCcH--HHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP--VLGLE--SFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~--~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
-.+|..+||-.-|-+...-| .--+.|.+|+++-+++ ..+ |.+ ..+.| +|-+.+++..=+ . .-++|
T Consensus 40 d~~G~r~lDg~sg~W~~~~G--h~~~~i~~Ai~~Q~~~--l~~-~~~~~~t~~Pa~~LA~~L~~~aP~--~----~l~~v 108 (449)
T COG0161 40 DIDGRRYLDGMSGLWCVNHG--HGRPEIAEAIKKQLDK--LPH-VMFGGFTHEPAIELAEKLAELAPE--G----GLDHV 108 (449)
T ss_pred eCCCCEEEecccHHHHhhcC--cCCHHHHHHHHHHHHh--CCc-hhhcccCCchHHHHHHHHHHhCCC--C----CccEE
Confidence 45677777877776666556 3456667665544433 122 211 22333 333333333210 0 02344
Q ss_pred EEEEeccChhHHHHHHHHHHH-hc----CCCe-EEecCCCchh
Q psy6266 79 FGVQTLSGTGALRVGAEFLHR-IL----NYTT-FYYSKPTWEN 115 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~-l~----~gd~-V~i~~P~y~~ 115 (218)
+-|.+|++|...++.+... ++ |.+. ++.-..+|-.
T Consensus 109 --Ff~~sGSeAvEtAlKma~qY~~~~G~p~r~~~Isr~~gYHG 149 (449)
T COG0161 109 --FFTDSGSEAVETALKMALQYWRARGQPQRKKFISRRNGYHG 149 (449)
T ss_pred --EEeCCchHHHHHHHHHHHHHHHhcCCCcceEEEEeccCcCc
Confidence 5888999988877764322 22 3333 6666666643
|
|
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.21 E-value=4.4 Score=40.46 Aligned_cols=99 Identities=11% Similarity=-0.037 Sum_probs=52.1
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
...|...||+.-|.. .-| ...|.|.+|.++.+.......+| .. +....+++++.. .. + -..+++ +-
T Consensus 581 D~dG~~ylD~~~~~~--~lG--h~hp~v~~Ai~~q~~~l~~~~~~----~~-~~~~elae~L~~-~~-p-~~~~~v--~f 646 (972)
T PRK06149 581 DMAGRSYLDMVNNVT--VLG--HGHPRLAAAAARQWSLLNTNSRF----HY-AAVAEFSERLAA-LA-P-DGLDTV--FL 646 (972)
T ss_pred eCCCCEEEECCCCcc--ccC--CCCHHHHHHHHHHHHhccccccc----cC-HHHHHHHHHHHH-hC-C-CCcCEE--EE
Confidence 356778888876642 234 34677777765554331111112 12 223334444432 11 0 011343 57
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchh
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWEN 115 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~ 115 (218)
+.+|++|...++++.+.....+.|+..+=+|-.
T Consensus 647 ~~SGsEA~e~AlklAr~~tgr~~ii~~~~~yHG 679 (972)
T PRK06149 647 VNSGSEANDLAIRLAWAASGRRDVVSVLEAYHG 679 (972)
T ss_pred eCCchHHHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence 788899988888754444334567777776664
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=3.3 Score=36.33 Aligned_cols=148 Identities=9% Similarity=-0.060 Sum_probs=71.9
Q ss_pred CccCchHHHHHHHHHhhcC--CCCccCcCCCCcHH-------HHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHH
Q psy6266 23 KPWVLPVVRQAEKELAADD--SLNHEYLPVLGLES-------FSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVG 93 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~--~~~~~Y~~~~G~~~-------lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~ 93 (218)
...+++.|++|+.+...+. .+.-.|....=.++ .|+.+++. ++ . .++.++ .+.+.++++++..+
T Consensus 11 P~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l-~~-~----~~~~~v-~~~~gsgt~~~Ea~ 83 (360)
T PRK05355 11 PAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLREL-LN-I----PDNYKV-LFLQGGASLQFAMV 83 (360)
T ss_pred CCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHH-hC-C----CCCcEE-EEEcCCchHHHHHH
Confidence 4578999999977654220 01111222222233 33333332 33 1 112334 34556677788877
Q ss_pred HHHHHHhcCCCeEEecCCC-chhHH-HHHHHhCCCcceeEeccCCcCccccHHHHHH-HHhcCCCCcEEEEcccCCCCcH
Q psy6266 94 AEFLHRILNYTTFYYSKPT-WENHR-LVFLNAGFTEAREYRYWNPEKRAVDFTGMYE-DLVNAPDNSVIILHACAHNPTA 170 (218)
Q Consensus 94 ~~~l~~l~~gd~V~i~~P~-y~~y~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~~~~~~iil~~~p~NPTG 170 (218)
+.-+ +.+||++++..=+ |+... .+.+..|. . ..+...... ...+...+.+ .|.+ +.+.+.+ .-..+.||
T Consensus 84 ~~nl--~~~g~~~l~i~~G~fg~r~~~~a~~~g~-~-~~~~~~~~~-g~~~~~~~~~~~l~~--~~~~V~~-th~eTstG 155 (360)
T PRK05355 84 PMNL--LGGGKKADYVDTGSWSKKAIKEAKKYGE-V-NVAASSEDD-GFTYIPPLDEWQLSD--DAAYVHY-TSNETIDG 155 (360)
T ss_pred HHhc--CCCCCeEEEEECCHHHHHHHHHHHHhCC-c-eEEeccccc-CCCCCCChhhccCCC--CCCEEEE-ccCCCcce
Confidence 6544 5688888776544 44333 35666676 4 333221001 1222223333 4532 2233333 22345556
Q ss_pred H---HHHHHhhcCeEEEeeCC
Q psy6266 171 Q---QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 171 ~---~l~~l~~~~~i~ii~D~ 188 (218)
. .|.++ ++++++.|+
T Consensus 156 v~~~~i~~i---~g~l~vVDa 173 (360)
T PRK05355 156 TEFHELPDT---GDVPLVADM 173 (360)
T ss_pred EecCccccc---CCCcEEEEc
Confidence 5 24444 899999994
|
|
| >KOG1383|consensus | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.4 Score=43.21 Aligned_cols=110 Identities=13% Similarity=0.121 Sum_probs=74.2
Q ss_pred EEEeccChhHHHHHHHHHH--Hhc--C--CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC
Q psy6266 80 GVQTLSGTGALRVGAEFLH--RIL--N--YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~--~l~--~--gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~ 153 (218)
...|+|+++++-++-..-. ... + -.+++.+.-.-..+....+..+. +...+|+. +..+.+|+..+++.+.
T Consensus 141 g~~t~G~Ses~l~~~k~~~~~r~~~k~I~~p~iv~~~~v~~a~eK~a~yf~v-~l~~V~~~-~~~~~~D~~k~~~~i~-- 216 (491)
T KOG1383|consen 141 GCGTVGGSESGLAAKKSYRNRRKAQKGIDKPNIVTPQNVHAAFEKAARYFEV-ELREVPLD-EGDYRVDPGKVVRMID-- 216 (491)
T ss_pred CccccccchHHHHHHHHHHHHHHhccCCCCccccchHHHHHHHHHHHhhEEE-EEEeeecc-ccceEecHHHHHHHhc--
Confidence 4689999998433222111 011 1 13444455555555566677777 88888884 4678899999999886
Q ss_pred CCCcEEEEcccCCCCcHH-----HHHHHhhc-CeEEEeeCCceeeccCC
Q psy6266 154 PDNSVIILHACAHNPTAQ-----QVAHMVDK-HHVYLLRSGRINMCGLT 196 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~-----~l~~l~~~-~~i~ii~D~r~~y~~l~ 196 (218)
+.++.++..-|+=|+|. +|.+++.| +++.+-.| .+-.+|.
T Consensus 217 -eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvD--a~~GgFi 262 (491)
T KOG1383|consen 217 -ENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVD--ACLGGFI 262 (491)
T ss_pred -cceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeec--ccCcccc
Confidence 44666666678889998 78888877 99999999 5555543
|
|
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.25 E-value=4.9 Score=35.55 Aligned_cols=134 Identities=13% Similarity=0.088 Sum_probs=81.6
Q ss_pred CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH---hcCCCeEEec-CCCchhHHH
Q psy6266 43 LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR---ILNYTTFYYS-KPTWENHRL 118 (218)
Q Consensus 43 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~---l~~gd~V~i~-~P~y~~y~~ 118 (218)
+...|+-+.+.-.|++++.+. || .. - ++-|.=|-+|-.+.+..+.+ ..||....++ +-.|-.-..
T Consensus 71 GDEAYagsrs~~~L~~avkdi-fG-fq-------~--~iPthQGRgAE~Il~~i~ik~~~~~pg~~~~~~sN~~FdTTr~ 139 (471)
T COG3033 71 GDEAYAGSRSYYALADAVKDI-FG-FQ-------Y--TIPTHQGRGAENILIPILIKKGEQEPGSKMVAFSNYHFDTTRG 139 (471)
T ss_pred cchhhcccccHHHHHHHHHHh-cC-ce-------e--eeeccCCccHHHHHHHHHhhhccccCCccccccccceecchhH
Confidence 355699999999999987654 45 21 1 23566666676766665533 1245333333 334444455
Q ss_pred HHHHhCCCcceeEeccCCcC--------ccccHHHHHHHHhcCC--CCcEEEEcccCCCCcHH--------HHHHHhhcC
Q psy6266 119 VFLNAGFTEAREYRYWNPEK--------RAVDFTGMYEDLVNAP--DNSVIILHACAHNPTAQ--------QVAHMVDKH 180 (218)
Q Consensus 119 ~~~~~g~~~~~~~~~~~~~~--------~~~d~~~~~~~l~~~~--~~~~iil~~~p~NPTG~--------~l~~l~~~~ 180 (218)
-.+..|+ .++.++....-+ ..+|++.+++.|.+.. .-+.+++-.+.|--.|. ++.++|++|
T Consensus 140 h~~~ng~-~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky 218 (471)
T COG3033 140 HIQINGA-TPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKY 218 (471)
T ss_pred HHHhcCC-ccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHc
Confidence 6677788 787766521111 1347888888887642 23444443333333333 688999999
Q ss_pred eEEEeeCC
Q psy6266 181 HVYLLRSG 188 (218)
Q Consensus 181 ~i~ii~D~ 188 (218)
+|.++-|-
T Consensus 219 ~ipvv~Da 226 (471)
T COG3033 219 DIPVVMDA 226 (471)
T ss_pred CCcEEeeh
Confidence 99999994
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=90.39 E-value=3 Score=41.31 Aligned_cols=141 Identities=18% Similarity=0.208 Sum_probs=76.4
Q ss_pred eeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCC-----Cc----HHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 13 IRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVL-----GL----ESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 13 ~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~-----G~----~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
+.|.| + -.+|+.|.+. ++..++..+.|+|.+ |. -+|++.++++. | .+..+. -..
T Consensus 70 g~G~y---~--~~~p~~i~r~---v~~~p~~~TaytPyQ~EisQG~Le~l~e~Qt~i~eLt-G------m~~aNa--Sl~ 132 (939)
T TIGR00461 70 GMGYY---G--TILPPVIQRN---LLENPGWYTAYTPYQPEISQGRLEALLNFQTVVSDLT-G------LPVANA--SLL 132 (939)
T ss_pred CCCcC---C--CcCChHHHHH---HHhCchhhhcCCCCChhhhhHHHHHHHHHHHHHHHHH-C------CChhhh--hcc
Confidence 56655 1 2356666643 333333457788854 43 34555555543 2 111221 133
Q ss_pred ccChhHHHHHHHHHHH-hcCCCeEEecCCCchhHHHHHH----HhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcE
Q psy6266 84 LSGTGALRVGAEFLHR-ILNYTTFYYSKPTWENHRLVFL----NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSV 158 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~-l~~gd~V~i~~P~y~~y~~~~~----~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 158 (218)
.+++.+...++++... ..++++|++++-.+|.+...++ ..|. +++.+ |++.+++.+ ....
T Consensus 133 d~atA~aEa~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~-~v~~~----------~~~~l~~~~----~~~~ 197 (939)
T TIGR00461 133 DEGTAAAEAMALSFNVSKKKANKFFVAKDLHPQTKSVLHTRAKPFGI-EVIVV----------DCSDIKKAV----DVFG 197 (939)
T ss_pred chhhHHHHHHHHHHHhhcCCCCEEEECCCCCcchHHHHHHHHHhcCc-EEEEE----------cHHHHhhcC----CEEE
Confidence 5566555544444321 1234899999999999886665 5566 55554 233333333 1123
Q ss_pred EEEcccCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 159 IILHACAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 159 iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
++++ +| |-+|. +|.+++++++.+++.+
T Consensus 198 v~~q-~P-n~~G~ied~~~i~~~~h~~gal~~~~ 229 (939)
T TIGR00461 198 CLLQ-YP-ATDGSILDYKQLIDALHSHKSLVSVA 229 (939)
T ss_pred EEEE-CC-CCCeEEecHHHHHHHHHHcCCEEEEE
Confidence 4444 33 55676 7888888888776654
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=88.53 E-value=4.4 Score=35.94 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=58.7
Q ss_pred EEEeccChhHHHHHHHHHHHh-cCCCeEEecCCCchhH-H-HHHHHhCCCc-ceeEeccCCcCccccHHHHHHHHhcCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRI-LNYTTFYYSKPTWENH-R-LVFLNAGFTE-AREYRYWNPEKRAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l-~~gd~V~i~~P~y~~y-~-~~~~~~g~~~-~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 155 (218)
.+.+.+|++++..+..-+ + .+||.|++.. .|+.. . .+.+..|+ . +..+.. +-...++++.++. .
T Consensus 61 ~~l~GsGT~a~Eaa~~nl--~~~~g~~vLv~g-~FG~r~~~eia~~~g~-~~v~~l~~--~~g~~~~~~~ve~------~ 128 (374)
T TIGR01365 61 GIVPASDTGAVEMALWSM--LGCRGVDVLAWE-SFGKGWVTDVTKQLKL-PDVRVLEA--EYGKLPDLKKVDF------K 128 (374)
T ss_pred EEECCchHHHHHHHHHHc--CCCCCCeEEEEC-HHHHHHHHHHHHhcCC-CCcEEEcC--CCCCCCCHHHcCC------C
Confidence 467888999999887755 5 4799999877 78776 4 67777888 4 455432 2223457666641 1
Q ss_pred CcEEEEcccCCCC--cHH--HHHHHhhc-CeEEEeeC
Q psy6266 156 NSVIILHACAHNP--TAQ--QVAHMVDK-HHVYLLRS 187 (218)
Q Consensus 156 ~~~iil~~~p~NP--TG~--~l~~l~~~-~~i~ii~D 187 (218)
+.+.+. ||= ||. .+.+++++ ++..+|.|
T Consensus 129 ~~v~~v----hnETSTGv~npv~~i~~~~~~~lliVD 161 (374)
T TIGR01365 129 NDVVFT----WNGTTSGVRVPNGDFIPADREGLTICD 161 (374)
T ss_pred CCEEEe----cCCCchheeccccccccccCCCcEEEE
Confidence 233333 554 444 45555554 58889998
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=84.65 E-value=21 Score=31.57 Aligned_cols=101 Identities=7% Similarity=-0.092 Sum_probs=51.4
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecC-CCchhHH-HHHHHhCCCcceeEec-cCCcCccccHHHHHHHHhcCCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSK-PTWENHR-LVFLNAGFTEAREYRY-WNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~-P~y~~y~-~~~~~~g~~~~~~~~~-~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
.+.+-||+.++..+..-+ +.+||++++.. =.|+... .+++..|. ..+.... +.....-++++.+ +..+..
T Consensus 74 ~~l~Gsgt~~~ea~~~nl--~~~~~~~l~~~~G~fg~r~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 146 (365)
T PLN02452 74 LFLQGGASTQFAAIPLNL--CKPGDKADFVVTGSWSKKAAKEAKKYCK-TNVIASGKDEKYTKIPSVSEW----ELTPDA 146 (365)
T ss_pred EEEeCccHHHHHHHHHhc--CCCCCeEEEEECCHHHHHHHHHHHHhCC-CcEEEecCCCCCCCCCChHHc----CCCCCC
Confidence 457788899988877655 56888776665 3455433 35666676 4444322 1111112355443 222223
Q ss_pred cEEEEcccCCCCcHHHHHHHhhcCeEEEeeCC
Q psy6266 157 SVIILHACAHNPTAQQVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 157 ~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D~ 188 (218)
+.+.+ ....-.||.++..+-+-.++.++.|+
T Consensus 147 ~~v~~-~hnETstGv~~~~~~~i~~~~lvVDa 177 (365)
T PLN02452 147 KFVHI-CANETIHGVEFKDYPDVGNVPLVADM 177 (365)
T ss_pred cEEEE-CCCCCCCcEecCcccccCCCeEEEEC
Confidence 34333 21233556553333221247888983
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=84.04 E-value=10 Score=33.55 Aligned_cols=99 Identities=7% Similarity=-0.057 Sum_probs=52.0
Q ss_pred ceEEEEeccChhHHHHHHHHHHHhcCCCeE--EecCCCchhHHH-HHHHhCCCcceeEec-cCCc-CccccHHHHHHHHh
Q psy6266 77 RAFGVQTLSGTGALRVGAEFLHRILNYTTF--YYSKPTWENHRL-VFLNAGFTEAREYRY-WNPE-KRAVDFTGMYEDLV 151 (218)
Q Consensus 77 ~v~~~~t~G~~~al~~~~~~l~~l~~gd~V--~i~~P~y~~y~~-~~~~~g~~~~~~~~~-~~~~-~~~~d~~~~~~~l~ 151 (218)
+| .+.+.||++++..+..-+ +.+||.+ ++..=.|+.... ..+..| ++..... +..+ ..-++.+. ++
T Consensus 69 ~V-lfl~GggT~~~ea~~~Nl--l~~g~~~~~~~~tG~fg~r~~~ea~~~g--~v~~~~~~~~~~~~~~p~~~~----~~ 139 (364)
T PRK12462 69 GV-VFLQGGSSLQFSMIPMNF--SRPGAAAPEYVTTGYWSRKAIGEASRVA--AMRVVWDGAASGYRTLPSLAE----LD 139 (364)
T ss_pred eE-EEEeccHHHHHHHHHHHc--CCCCCcEEEEEeCCHHHHHHHHHHHhcC--CceEecCcCCCCCCcCCCHHH----hc
Confidence 44 356677999998877644 6789955 577778887553 334444 3333311 1100 01123333 32
Q ss_pred cCCCCcEEEEcccCCCC--cHHHHHHHhhcCeEEEeeC
Q psy6266 152 NAPDNSVIILHACAHNP--TAQQVAHMVDKHHVYLLRS 187 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NP--TG~~l~~l~~~~~i~ii~D 187 (218)
..+..+.+.+ +||= ||.+.-++.+.++..+|.|
T Consensus 140 ~~~d~~~v~~---t~NETstGv~~~~~~~~~~~llvvD 174 (364)
T PRK12462 140 WDARAPFRHY---VSNETVEGLQFPDAAGLPDSPLIAD 174 (364)
T ss_pred cCCCCcEEEE---ccCCCCceEecCcccccCCCeEEEE
Confidence 2112233222 3554 4545445555678899999
|
|
| >KOG1404|consensus | Back alignment and domain information |
|---|
Probab=83.49 E-value=33 Score=30.75 Aligned_cols=179 Identities=13% Similarity=0.077 Sum_probs=91.1
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|-.+|...+|+.-|...-.-| ..-|.|.+|+.+-...-. ....|.. .=+.+|-+++++++=+ . + . + +
T Consensus 45 yDe~G~ryLD~f~Gi~tvslG--HchP~v~~a~~kQl~~l~H~t~~~~~-~pi~~~Ae~L~s~~P~-~----l--~-~-v 112 (442)
T KOG1404|consen 45 YDEEGRRYLDAFGGIVTVSLG--HCHPDVVAAAVKQLKKLYHTTSGYLN-PPIHDLAEALVSKLPG-D----L--K-V-V 112 (442)
T ss_pred EcCCCceeehhhCCeEEEEcC--CCChHHHHHHHHhhhhhEEeeccccC-CcHHHHHHHHHHhCCC-C----c--e-E-E
Confidence 667888888888887665555 334555555443222100 1223433 2356777777776632 1 1 1 2 4
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchh-HHHHHHHhCCCcceeEecc-------------------CCcCcc
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWEN-HRLVFLNAGFTEAREYRYW-------------------NPEKRA 140 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~-y~~~~~~~g~~~~~~~~~~-------------------~~~~~~ 140 (218)
.-+.+|++|-.+++++.+....--.++...-+|-. -...+.+.++ .+...++. ..+..+
T Consensus 113 fF~nsGsEANelal~mar~Yt~~~diIa~r~~YHG~t~~t~glt~~-~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~ 191 (442)
T KOG1404|consen 113 FFVNSGSEANELALKMARLYTGNLDIIARRNSYHGNTLYTLGLTGL-SPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEE 191 (442)
T ss_pred EEecCCchHHHHHHHHHHHhcCCceEEEeeccccCCchhhcccccC-CcccccCCCCCCcccccCCCCcccccCCCCchh
Confidence 68899999999988765432222344444445433 3323333333 33332221 000000
Q ss_pred ccHHHHHHHHhc----CCCCcEEEEcc--------cCCCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 141 VDFTGMYEDLVN----APDNSVIILHA--------CAHNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 141 ~d~~~~~~~l~~----~~~~~~iil~~--------~p~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
-.-+...+.+++ ..+.++.-++. .-.=|-|. +..+++++++...|.| |+-.||
T Consensus 192 e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaD--EVqtGf 258 (442)
T KOG1404|consen 192 EASDRYAKELEDLILYDGPETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIAD--EVQTGF 258 (442)
T ss_pred hhHHHHHHHHHHHHHhcCCCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEeh--hhhhcc
Confidence 012222333322 12333221111 11224455 7889999999999999 887765
|
|
| >KOG0628|consensus | Back alignment and domain information |
|---|
Probab=82.79 E-value=2.4 Score=38.45 Aligned_cols=86 Identities=10% Similarity=0.095 Sum_probs=58.5
Q ss_pred eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCC--cEEEEcc-cCCCCcHH----HHHHH
Q psy6266 105 TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDN--SVIILHA-CAHNPTAQ----QVAHM 176 (218)
Q Consensus 105 ~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~--~~iil~~-~p~NPTG~----~l~~l 176 (218)
.++..+-+-.+-.......|. +.+.++.. + .++++-+.+++++++. .++ +++++-+ --.|+++. +|..+
T Consensus 184 V~Y~SDqahssveka~~i~~V-klR~l~td-~-n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~V 260 (511)
T KOG0628|consen 184 VAYCSDQAHSSVEKACLIAGV-KLRALPTD-E-NFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPV 260 (511)
T ss_pred eEEecCcccchHHHhHhhcce-eEEEeecc-c-CcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcch
Confidence 356667777776666666666 67777663 2 6889999999998753 111 3434322 22344443 68888
Q ss_pred hhcCeEEEeeCCceeeccC
Q psy6266 177 VDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 177 ~~~~~i~ii~D~r~~y~~l 195 (218)
|+++++|+-.| .+|+|=
T Consensus 261 c~~~glWLHVD--AAYAGs 277 (511)
T KOG0628|consen 261 CREEGLWLHVD--AAYAGS 277 (511)
T ss_pred hhhcCEEEEee--hhhccc
Confidence 99999999999 999974
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.60 E-value=21 Score=32.26 Aligned_cols=148 Identities=14% Similarity=0.107 Sum_probs=74.2
Q ss_pred eeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC-----CCc----HHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 12 EIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV-----LGL----ESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 12 l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-----~G~----~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
+|.|.| +..+|+.|.+ .+++.++.-+.|+|. +|. -+|...++++. | -+ +. +- -.
T Consensus 80 iG~GyY-----~~~~P~vI~r---nile~pewyTaYTPYQpEISQGrLqaLfefQtlv~dLT-G-m~---VA--NA--Sm 142 (450)
T COG0403 80 IGAGYY-----DTYTPPVILR---NILENPEWYTAYTPYQPEISQGRLEALFEFQTLVADLT-G-LD---VA--NA--SM 142 (450)
T ss_pred ccCccc-----CCcCcHHHHH---HhhcCccccccCCCCchhhhhHHHHHHHHHHHHHHHHh-C-CC---cc--cc--hh
Confidence 567766 2356777763 445445566789984 453 33444444433 2 11 10 00 02
Q ss_pred eccChhHHHHHHHHHHHhcC--CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEE
Q psy6266 83 TLSGTGALRVGAEFLHRILN--YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVII 160 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~--gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ii 160 (218)
--++|.+-...+++. .+.. .++++++.-++|.+...++.. + ++..+..-..+ ..|.+.+++. .. ....-++
T Consensus 143 ~DeaTAaAEAm~ma~-r~~k~k~~~~~V~~~vhpqt~~Vl~Tr-a-~~~g~~i~~~~--~~d~~~l~~~-~~-~~~~gv~ 215 (450)
T COG0403 143 LDEATAAAEAMLMAK-RVTKKKRNKFLVPKDVHPQTLDVLRTR-A-EGLGIEIEVVD--ADDLDDLESA-DD-GDVFGVL 215 (450)
T ss_pred hhhHHHHHHHHHHHH-HhhcCcCceEEecCCCCHHHHHHHHhh-c-ccCceEEEEec--cchhhhhhhc-cc-cCeEEEE
Confidence 234444444433332 2333 689999999999999887654 2 33222110000 1144555443 21 1223445
Q ss_pred EcccCCCCcHH------HHHHHhhcCeEEEe
Q psy6266 161 LHACAHNPTAQ------QVAHMVDKHHVYLL 185 (218)
Q Consensus 161 l~~~p~NPTG~------~l~~l~~~~~i~ii 185 (218)
++ +| |-.|. .+.+.+++++..++
T Consensus 216 vQ-yP-~~~G~~~~d~~~l~~~~h~~~al~~ 244 (450)
T COG0403 216 VQ-YP-NTFGIVEEDLRALIEAAHSAGALVI 244 (450)
T ss_pred Ee-cC-CCCCccchhHHHHHHHHhhcCCEEE
Confidence 54 34 35562 67777777764443
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=80.32 E-value=5.3 Score=36.12 Aligned_cols=86 Identities=12% Similarity=0.132 Sum_probs=47.4
Q ss_pred ccChhHHHHHHHHHHHhcCC--CeEEecCCCchhHHHHHHH----hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 84 LSGTGALRVGAEFLHRILNY--TTFYYSKPTWENHRLVFLN----AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~g--d~V~i~~P~y~~y~~~~~~----~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
.|++.+...+.++.+ .... ++|+++.-..|.+...++. .|. +++.++.. + ....| . +..
T Consensus 134 d~atA~aEa~~ma~r-~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~g~-~iv~~~~~-~-~~~~d---------~--~~~ 198 (429)
T PF02347_consen 134 DGATAAAEAMLMAVR-ATKRKRNKVLVPESLHPQTRAVLRTYAAPLGI-EIVEVPLD-E-DGTTD---------D--DDT 198 (429)
T ss_dssp SCCHHHHHHHHHHHH-HHTT---EEEEETTS-CHHHHHHHHHCCHCCE-EEEEE-BB-T-TCSB----------S--TTE
T ss_pred ChhHHHHHHHHHHHH-hcccCCcEEEEcCCcChhhHHHHHHhhhhCCe-EEEEeccc-c-cCCcc---------c--cCe
Confidence 466655554444443 2333 5999999999999986554 566 67777653 2 12223 1 233
Q ss_pred -EEEEcccCCCCcHH-----HHHHHhhcCeEEEee
Q psy6266 158 -VIILHACAHNPTAQ-----QVAHMVDKHHVYLLR 186 (218)
Q Consensus 158 -~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~ 186 (218)
.++++ +|+. .|. ++.+++++++..++.
T Consensus 199 a~v~vq-~Pn~-~G~~ed~~~i~~~~h~~gal~~~ 231 (429)
T PF02347_consen 199 AAVMVQ-NPNT-FGVFEDIKEIADIAHAAGALVIV 231 (429)
T ss_dssp EEEEEE-SS-T-TSB--THHHHHHHHHHTT-EEEE
T ss_pred EEEEee-cCCC-CceEeeHHHHHHHHHHcCCEEEE
Confidence 34443 4543 353 788999888765554
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 218 | ||||
| 3ii0_A | 422 | Crystal Structure Of Human Glutamate Oxaloacetate T | 6e-52 | ||
| 3ii0_A | 422 | Crystal Structure Of Human Glutamate Oxaloacetate T | 6e-11 | ||
| 1ajr_A | 412 | Refinement And Comparison Of The Crystal Structures | 2e-51 | ||
| 1ajr_A | 412 | Refinement And Comparison Of The Crystal Structures | 4e-12 | ||
| 1ajs_A | 412 | Refinement And Comparison Of The Crystal Structures | 2e-51 | ||
| 1ajs_A | 412 | Refinement And Comparison Of The Crystal Structures | 3e-12 | ||
| 2cst_A | 411 | Crystal Structure Of The Closed Form Of Chicken Cyt | 4e-48 | ||
| 2cst_A | 411 | Crystal Structure Of The Closed Form Of Chicken Cyt | 2e-12 | ||
| 1aat_A | 411 | Oxoglutarate-Induced Conformational Changes In Cyto | 2e-47 | ||
| 1aat_A | 411 | Oxoglutarate-Induced Conformational Changes In Cyto | 2e-12 | ||
| 1yaa_A | 412 | Aspartate Aminotransferase From Saccharomyces Cerev | 5e-37 | ||
| 3pd6_A | 401 | Crystal Structure Of Mouse Mitochondrial Aspartate | 3e-36 | ||
| 3hlm_A | 401 | Crystal Structure Of Mouse Mitochondrial Aspartate | 3e-36 | ||
| 7aat_A | 401 | X-Ray Structure Refinement And Comparison Of Three | 1e-34 | ||
| 1aka_A | 401 | Structural Basis For The Catalytic Activity Of Aspa | 1e-34 | ||
| 4h51_A | 420 | Crystal Structure Of A Putative Aspartate Aminotran | 1e-29 | ||
| 3meb_A | 448 | Structure Of Cytoplasmic Aspartate Aminotransferase | 1e-27 | ||
| 3meb_A | 448 | Structure Of Cytoplasmic Aspartate Aminotransferase | 3e-08 | ||
| 4f4e_A | 420 | Crystal Structure Of Aromatic-Amino-Acid Aminotrans | 5e-25 | ||
| 4eff_A | 420 | Crystal Structure Of Aromatic-Amino-Acid Aminotrans | 5e-25 | ||
| 4eu1_A | 409 | Structure Of A Mitochondrial Aspartate Aminotransfe | 6e-25 | ||
| 3tat_A | 397 | Tyrosine Aminotransferase From E. Coli Length = 397 | 3e-22 | ||
| 4f5f_A | 406 | Structure Of Aspartate Aminotransferase Conversion | 4e-22 | ||
| 3zzj_A | 396 | Structure Of An Engineered Aspartate Aminotransfera | 5e-22 | ||
| 1arh_A | 396 | Aspartate Aminotransferase, Y225rR386A MUTANT Lengt | 6e-22 | ||
| 1asb_A | 396 | The Structural Basis For The Reduced Activity Of Th | 6e-22 | ||
| 1aia_A | 396 | Structural Basis For The Catalytic Activity Of Aspa | 6e-22 | ||
| 4f5m_A | 406 | Wild-type E. Coli Aspartate Aminotransferase: A Tem | 6e-22 | ||
| 1asf_A | 396 | The Structural Basis For The Reduced Activity Of Th | 6e-22 | ||
| 3aat_A | 396 | Activity And Structure Of The Active-Site Mutants R | 6e-22 | ||
| 1asl_A | 396 | Crystal Structures Of Escherichia Coli Aspartate Am | 6e-22 | ||
| 2q7w_A | 396 | Structural Studies Reveals The Inactivation Of E. C | 6e-22 | ||
| 2aat_A | 396 | 2.8-Angstroms-Resolution Crystal Structure Of An Ac | 6e-22 | ||
| 1aam_A | 396 | The Structural Basis For The Altered Substrate Spec | 6e-22 | ||
| 1ix6_A | 396 | Aspartate Aminotransferase Active Site Mutant V39f | 7e-22 | ||
| 2d5y_A | 396 | Aspartate Aminotransferase Mutant Mc With Isovaleri | 7e-22 | ||
| 4f5i_A | 406 | Substrate Specificity Conversion Of E. Coli Pyridox | 1e-21 | ||
| 4f5k_A | 406 | Substrate Specificity Conversion Of Aspartate Amino | 1e-21 | ||
| 2d61_A | 396 | Aspartate Aminotransferase Mutant Ma With Maleic Ac | 1e-21 | ||
| 1tog_A | 396 | Hydrocinnamic Acid-Bound Structure Of Srhept + A293 | 1e-21 | ||
| 1toj_A | 396 | Hydrocinnamic Acid-Bound Structure Of Srhept Mutant | 1e-21 | ||
| 4f5g_A | 406 | Rational Design And Directed Evolution Of E. Coli A | 2e-21 | ||
| 4f5j_A | 406 | Rational Design And Directed Evolution For Conversi | 2e-21 | ||
| 1czc_A | 396 | Aspartate Aminotransferase Mutant Atb17139S142N WIT | 2e-21 | ||
| 3fsl_A | 397 | Crystal Structure Of Tyrosine Aminotransferase Trip | 3e-21 | ||
| 4f5h_A | 406 | Intercoversion Of Substrate Specificity: E. Coli As | 3e-21 | ||
| 1g4v_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 5e-21 | ||
| 1g7w_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 5e-21 | ||
| 1g4x_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 5e-21 | ||
| 1g7x_A | 396 | Aspartate Aminotransferase Active Site Mutant N194a | 5e-21 | ||
| 1ix8_A | 396 | Aspartate Aminotransferase Active Site Mutant V39fN | 5e-21 | ||
| 1bqa_A | 396 | Aspartate Aminotransferase P195a Mutant Length = 39 | 5e-21 | ||
| 1b4x_A | 396 | Aspartate Aminotransferase From E. Coli, C191s Muta | 9e-21 | ||
| 1qis_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 1e-20 | ||
| 2d66_A | 396 | Aspartate Aminotransferase Mutant Mab Length = 396 | 1e-20 | ||
| 1qit_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 1e-20 | ||
| 1qir_A | 396 | Aspartate Aminotransferase From Escherichia Coli, C | 2e-20 | ||
| 2d64_A | 396 | Aspartate Aminotransferase Mutant Mabc With Isovale | 2e-20 | ||
| 1ahy_A | 396 | Aspartate Aminotransferase Hexamutant Length = 396 | 2e-20 | ||
| 1toe_A | 396 | Unliganded Structure Of Hexamutant + A293d Mutant O | 2e-20 | ||
| 1yoo_A | 396 | Aspartate Aminotransferase Mutant Atb17 With Isoval | 2e-20 | ||
| 1ari_A | 396 | Aspartate Aminotransferase, W140h Mutant, Maleate C | 3e-20 | ||
| 1bqd_A | 396 | Aspartate Aminotransferase P138aP195A DOUBLE MUTANT | 5e-20 | ||
| 3uak_A | 406 | Crystal Structure Of De Novo Designed Cysteine Este | 1e-14 | ||
| 1ay4_A | 394 | Aromatic Amino Acid Aminotransferase Without Substr | 2e-13 | ||
| 3k7y_A | 405 | Aspartate Aminotransferase Of Plasmodium Falciparum | 1e-09 | ||
| 3k7y_A | 405 | Aspartate Aminotransferase Of Plasmodium Falciparum | 3e-05 |
| >pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422 | Back alignment and structure |
|
| >pdb|3II0|A Chain A, Crystal Structure Of Human Glutamate Oxaloacetate Transaminase 1 (Got1) Length = 422 | Back alignment and structure |
|
| >pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|1AJR|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|1AJS|A Chain A, Refinement And Comparison Of The Crystal Structures Of Pig Cytosolic Aspartate Aminotransferase And Its Complex With 2-Methylaspartate Length = 412 | Back alignment and structure |
|
| >pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411 | Back alignment and structure |
|
| >pdb|2CST|A Chain A, Crystal Structure Of The Closed Form Of Chicken Cytosolic Aspartate Aminotransferase At 1.9 Angstroms Resolution Length = 411 | Back alignment and structure |
|
| >pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411 | Back alignment and structure |
|
| >pdb|1AAT|A Chain A, Oxoglutarate-Induced Conformational Changes In Cytosolic Aspartate Aminotransferase Length = 411 | Back alignment and structure |
|
| >pdb|1YAA|A Chain A, Aspartate Aminotransferase From Saccharomyces Cerevisiae Cytoplasm Length = 412 | Back alignment and structure |
|
| >pdb|3PD6|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate Aminotransferase, A Newly Identified Kynurenine Aminotransferase-Iv Length = 401 | Back alignment and structure |
|
| >pdb|3HLM|A Chain A, Crystal Structure Of Mouse Mitochondrial Aspartate AminotransferaseKYNURENINE AMINOTRANSFERASE IV Length = 401 | Back alignment and structure |
|
| >pdb|7AAT|A Chain A, X-Ray Structure Refinement And Comparison Of Three Forms Of Mitochondrial Aspartate Aminotransferase Length = 401 | Back alignment and structure |
|
| >pdb|1AKA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking Its Pyridoxal-5'-Phosphate-Binding Lysine Residue Length = 401 | Back alignment and structure |
|
| >pdb|4H51|A Chain A, Crystal Structure Of A Putative Aspartate Aminotransferase From Leishmania Major Friedlin Length = 420 | Back alignment and structure |
|
| >pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448 | Back alignment and structure |
|
| >pdb|3MEB|A Chain A, Structure Of Cytoplasmic Aspartate Aminotransferase From Giardia Lamblia Length = 448 | Back alignment and structure |
|
| >pdb|4F4E|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Covalently Bound To Pyridoxal Phosphate Length = 420 | Back alignment and structure |
|
| >pdb|4EFF|A Chain A, Crystal Structure Of Aromatic-Amino-Acid Aminotransferase From Burkholderia Pseudomallei Length = 420 | Back alignment and structure |
|
| >pdb|4EU1|A Chain A, Structure Of A Mitochondrial Aspartate Aminotransferase From Trypanosoma Brucei Length = 409 | Back alignment and structure |
|
| >pdb|3TAT|A Chain A, Tyrosine Aminotransferase From E. Coli Length = 397 | Back alignment and structure |
|
| >pdb|4F5F|A Chain A, Structure Of Aspartate Aminotransferase Conversion To Tyrosine Aminotransferase: Chimera P1. Length = 406 | Back alignment and structure |
|
| >pdb|3ZZJ|A Chain A, Structure Of An Engineered Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1ARH|A Chain A, Aspartate Aminotransferase, Y225rR386A MUTANT Length = 396 | Back alignment and structure |
|
| >pdb|1ASB|A Chain A, The Structural Basis For The Reduced Activity Of The D223a(D222a) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1AIA|A Chain A, Structural Basis For The Catalytic Activity Of Aspartate Aminotransferase K258h Lacking The Pyridoxal-5'-Phosphate Binding Lysine Residue Length = 396 | Back alignment and structure |
|
| >pdb|4F5M|A Chain A, Wild-type E. Coli Aspartate Aminotransferase: A Template For The Interconversion Of Substrate Specificity And Activity To Tyrosine Aminotransferase By The Janus Algorithm. Length = 406 | Back alignment and structure |
|
| >pdb|1ASF|A Chain A, The Structural Basis For The Reduced Activity Of The Y226f(Y225f) Active Site Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|3AAT|A Chain A, Activity And Structure Of The Active-Site Mutants R386y And R386f Of Escherichia Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1ASL|A Chain A, Crystal Structures Of Escherichia Coli Aspartate Aminotransferase In Two Conformations: Comparison Of An Unliganded Open And Two Liganded Closed Forms Length = 396 | Back alignment and structure |
|
| >pdb|2Q7W|A Chain A, Structural Studies Reveals The Inactivation Of E. Coli L-Aspartate Aminotransferase (S)-4,5-Amino-Dihydro-2-Thiophenecarboxylic Acid (Sadta) Via Two Mechanisms At Ph 6.0 Length = 396 | Back alignment and structure |
|
| >pdb|2AAT|A Chain A, 2.8-Angstroms-Resolution Crystal Structure Of An Active-Site Mutant Of Aspartate Aminotransferase From Escherichia Coli Length = 396 | Back alignment and structure |
|
| >pdb|1AAM|A Chain A, The Structural Basis For The Altered Substrate Specificity Of The R292d Active Site Mutant Of Aspartate Aminotransferase From E. Coli Length = 396 | Back alignment and structure |
|
| >pdb|1IX6|A Chain A, Aspartate Aminotransferase Active Site Mutant V39f Length = 396 | Back alignment and structure |
|
| >pdb|2D5Y|A Chain A, Aspartate Aminotransferase Mutant Mc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|4F5I|A Chain A, Substrate Specificity Conversion Of E. Coli Pyridoxal-5'-phosphate Dependent Aspartate Aminotransferase To Tyrosine Aminotransferase: Chimera P4. Length = 406 | Back alignment and structure |
|
| >pdb|4F5K|A Chain A, Substrate Specificity Conversion Of Aspartate Aminotransferase To Tyrosine Aminotransferase By The Janus Algorithm: Chimera P6. Length = 406 | Back alignment and structure |
|
| >pdb|2D61|A Chain A, Aspartate Aminotransferase Mutant Ma With Maleic Acid Length = 396 | Back alignment and structure |
|
| >pdb|1TOG|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1TOJ|A Chain A, Hydrocinnamic Acid-Bound Structure Of Srhept Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|4F5G|A Chain A, Rational Design And Directed Evolution Of E. Coli Apartate Aminotransferase To Tyrosine Aminotransferase: Mutant P2. Length = 406 | Back alignment and structure |
|
| >pdb|4F5J|A Chain A, Rational Design And Directed Evolution For Conversion Of Substrate Specificity From E.coli Aspartate Aminotransferase To Tyrosine Aminotransferase: Mutant P5. Length = 406 | Back alignment and structure |
|
| >pdb|1CZC|A Chain A, Aspartate Aminotransferase Mutant Atb17139S142N WITH GLUTARIC ACID Length = 396 | Back alignment and structure |
|
| >pdb|3FSL|A Chain A, Crystal Structure Of Tyrosine Aminotransferase Tripple Mutant (P181q, R183g,A321k) From Escherichia Coli At 2.35 A Resolution Length = 397 | Back alignment and structure |
|
| >pdb|4F5H|A Chain A, Intercoversion Of Substrate Specificity: E. Coli Aspatate Aminotransferase To Tyrosine Aminotransferase: Chimera P3. Length = 406 | Back alignment and structure |
|
| >pdb|1G4V|A Chain A, Aspartate Aminotransferase Active Site Mutant N194a/y225f Length = 396 | Back alignment and structure |
|
| >pdb|1G7W|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR386L Length = 396 | Back alignment and structure |
|
| >pdb|1G4X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292L Length = 396 | Back alignment and structure |
|
| >pdb|1G7X|A Chain A, Aspartate Aminotransferase Active Site Mutant N194aR292LR386L Length = 396 | Back alignment and structure |
|
| >pdb|1IX8|A Chain A, Aspartate Aminotransferase Active Site Mutant V39fN194A Length = 396 | Back alignment and structure |
|
| >pdb|1BQA|A Chain A, Aspartate Aminotransferase P195a Mutant Length = 396 | Back alignment and structure |
|
| >pdb|1B4X|A Chain A, Aspartate Aminotransferase From E. Coli, C191s Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1QIS|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191f Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|2D66|A Chain A, Aspartate Aminotransferase Mutant Mab Length = 396 | Back alignment and structure |
|
| >pdb|1QIT|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191w Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|1QIR|A Chain A, Aspartate Aminotransferase From Escherichia Coli, C191y Mutation, With Bound Maleate Length = 396 | Back alignment and structure |
|
| >pdb|2D64|A Chain A, Aspartate Aminotransferase Mutant Mabc With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1AHY|A Chain A, Aspartate Aminotransferase Hexamutant Length = 396 | Back alignment and structure |
|
| >pdb|1TOE|A Chain A, Unliganded Structure Of Hexamutant + A293d Mutant Of E. Coli Aspartate Aminotransferase Length = 396 | Back alignment and structure |
|
| >pdb|1YOO|A Chain A, Aspartate Aminotransferase Mutant Atb17 With Isovaleric Acid Length = 396 | Back alignment and structure |
|
| >pdb|1ARI|A Chain A, Aspartate Aminotransferase, W140h Mutant, Maleate Complex Length = 396 | Back alignment and structure |
|
| >pdb|1BQD|A Chain A, Aspartate Aminotransferase P138aP195A DOUBLE MUTANT Length = 396 | Back alignment and structure |
|
| >pdb|3UAK|A Chain A, Crystal Structure Of De Novo Designed Cysteine Esterase Ech14, Northeast Structural Genomics Consortium Target Or54 Length = 406 | Back alignment and structure |
|
| >pdb|1AY4|A Chain A, Aromatic Amino Acid Aminotransferase Without Substrate Length = 394 | Back alignment and structure |
|
| >pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405 | Back alignment and structure |
|
| >pdb|3K7Y|A Chain A, Aspartate Aminotransferase Of Plasmodium Falciparum Length = 405 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412 | Back alignment and structure |
|---|
Score = 251 bits (643), Expect = 6e-83
Identities = 103/207 (49%), Positives = 127/207 (61%), Gaps = 18/207 (8%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C+PWVLPVVR+ E+ +A + SLNHEYLP+LGL F + A+R+ LG D SP L+E
Sbjct: 39 AYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDD-SPALQE 97
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNY-----TTFYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GAEFL R N T Y S PTWENH VF AGF + R
Sbjct: 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS 157
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT------AQ--QVAH-MVDKHH 181
YRYW+ EKR +D G DL NAP+ S+ +LHACAHNPT Q Q+A M +
Sbjct: 158 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL 217
Query: 182 VYLLRSGRINMCGLTTQNLDHVAQAIH 208
G + NL+ A AI
Sbjct: 218 FPFF---DSAYQGFASGNLEKDAWAIR 241
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* Length = 412 | Back alignment and structure |
|---|
Score = 80.7 bits (200), Expect = 4e-18
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
+QV +++++ H+YLL SGRINMCGLTT+NLD+VA +IH+AVT I
Sbjct: 366 NPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412 | Back alignment and structure |
|---|
Score = 244 bits (625), Expect = 3e-80
Identities = 69/154 (44%), Positives = 92/154 (59%), Gaps = 2/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYR + KPWVLP V+ AEK + D S NHEYL + GL S +S A +++ G S L+E
Sbjct: 38 AYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFGTQ-SDALQE 96
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R VQ+LSGTGAL + A+F + Y SKPTW NH +F N G + Y YW
Sbjct: 97 DRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-KTATYPYWA 155
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
E +++D G + AP+ S+ +LH+CAHNPT
Sbjct: 156 NETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPT 189
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 Length = 412 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 4e-17
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T Q V + + H VYL+ SGR ++ GL N+++VA+AI + V
Sbjct: 366 TPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVV 408
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 5e-80
Identities = 57/154 (37%), Positives = 78/154 (50%), Gaps = 2/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y E+ L V +AE L A YLP+ GL + A +L G D P L++
Sbjct: 35 LYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGAD-HPVLKQ 93
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R +QTL G+GAL+VGA+FL R + + S PTWENH +F AGF E Y +++
Sbjct: 94 QRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-EVSTYPWYD 152
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
V F + L S+++LH C HNPT
Sbjct: 153 EATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPT 186
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} PDB: 3tat_A* Length = 397 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-16
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+A QV + ++ VYL+ SGR+ + GL T N+ VA+A +
Sbjct: 355 SAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420 | Back alignment and structure |
|---|
Score = 240 bits (616), Expect = 9e-79
Identities = 60/154 (38%), Positives = 86/154 (55%), Gaps = 3/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y E+ K +L VR AEK + L YLP+ G+ ++ ++ ++LLG D SP +
Sbjct: 58 VYTNEDGKIPLLRAVRDAEKARV-EAGLPRGYLPIDGIAAYDASVQKLLLGDD-SPLIAA 115
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
GR Q L GTGAL++GA+FL + S P+WENHR +F AGF E Y Y++
Sbjct: 116 GRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-EVVAYPYYD 174
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+ V+F GM L ++++LHAC HNPT
Sbjct: 175 AKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPT 208
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* Length = 420 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-16
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T+ QV + ++ +Y + +GRI + L T+NLD VA AI +
Sbjct: 377 TSAQVDRLREEFGIYAVSTGRICVAALNTRNLDVVANAIAAVL 419
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 9e-78
Identities = 70/155 (45%), Positives = 99/155 (63%), Gaps = 4/155 (2%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYR + KP+VL VR+AE +A ++ EYLP+ GL F+ A+ + LG + S +
Sbjct: 37 AYRDDNGKPYVLNCVRKAEAMIA-AKKMDKEYLPIAGLADFTRASAELALGEN-SEAFKS 94
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRYW 134
GR VQ +SGTG+LRVGA FL R + Y KP+W NH +F +AG + + YRY+
Sbjct: 95 GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGL-QLQAYRYY 153
Query: 135 NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+P+ ++DFTG ED+ P+ S+I+LHACAHNPT
Sbjct: 154 DPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPT 188
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* Length = 401 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 7e-17
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+QV + + +Y+ + GRI++ G+ + N+ ++A AIH
Sbjct: 358 KPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405 | Back alignment and structure |
|---|
Score = 237 bits (608), Expect = 1e-77
Identities = 38/154 (24%), Positives = 69/154 (44%), Gaps = 4/154 (2%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
++ + V A+K + ++ YL G E FS+ ++ G + S + +
Sbjct: 38 VCCNDDGDLHIFDSVLNADKLVT-ENYKEKPYLLGNGTEDFSTLTQNLIFGNN-SKYIED 95
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
+ +Q + GTGA+ V EFL LN T Y + P + NH + + GF + +++
Sbjct: 96 KKICTIQCIGGTGAIFVLLEFLKM-LNVETLYVTNPPYINHVNMIESRGF-NLKYINFFD 153
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+++ DL N P+ S +IL +NP
Sbjct: 154 YNLIDINYDLFLNDLRNIPNGSSVILQISCYNPC 187
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} Length = 405 | Back alignment and structure |
|---|
Score = 73.4 bits (181), Expect = 1e-15
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
A+ H+ HH+Y++ +GRIN+ G+T N+D++A I +++ I
Sbjct: 361 LAKIAEHL-KTHHIYIINNGRINVSGITKNNVDYIADKICLSLSQI 405
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396 | Back alignment and structure |
|---|
Score = 237 bits (607), Expect = 1e-77
Identities = 56/154 (36%), Positives = 80/154 (51%), Gaps = 3/154 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ E K VL V++AE+ L ++ YL + G+ F +L G S + +
Sbjct: 35 VYKDETGKTPVLTSVKKAEQYLLENE-TTKNYLGIDGIPEFGRCTQELLFGKG-SALIND 92
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
RA QT GTGALRV A+FL + + + S P+W NH+ VF +AG E REY Y++
Sbjct: 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-EVREYAYYD 151
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
E +DF + L A V++ H C HNPT
Sbjct: 152 AENHTLDFDALINSLNEAQAGDVVLFHGCCHNPT 185
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... Length = 396 | Back alignment and structure |
|---|
Score = 76.1 bits (188), Expect = 2e-16
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T +QV + ++ VY + SGR+N+ G+T N+ + +AI +
Sbjct: 354 TKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394 | Back alignment and structure |
|---|
Score = 234 bits (600), Expect = 1e-76
Identities = 46/154 (29%), Positives = 66/154 (42%), Gaps = 6/154 (3%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ ++ V AE+ + + Y + G F A ++LG L+
Sbjct: 35 VYKDATGHTPIMRAVHAAEQRML-ETETTKTYAGLSGEPEFQKAMGELILGDG----LKS 89
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
+ T+ GTGALR E + S PTW NH + G + YRY++
Sbjct: 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-PVQTYRYFD 148
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
E R VDF GM DL A +++LH C HNPT
Sbjct: 149 AETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPT 182
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* Length = 394 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 6e-16
Identities = 13/44 (29%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVT 212
T +QV + ++ +Y++ RIN+ GL + +A+AI + V
Sbjct: 351 TPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE-VG 393
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448 | Back alignment and structure |
|---|
Score = 234 bits (598), Expect = 1e-75
Identities = 63/159 (39%), Positives = 90/159 (56%), Gaps = 6/159 (3%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLR 74
AYR E KPW+LP V++AE +++D S N EY PV G F AA ++ G D S +
Sbjct: 58 AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFGKD-SKAAQ 116
Query: 75 EGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT---EAREY 131
EGR Q+LSGTG+L +G EFLH + FY TW NH ++ +EY
Sbjct: 117 EGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKVPYKEY 176
Query: 132 RYWNPE-KRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
Y + + +DF+ +D+ +AP+ S+ + HACAHNP+
Sbjct: 177 TYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPS 215
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} Length = 448 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-17
Identities = 24/50 (48%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 169 TAQQVAHMVDKHHVYLLRS-GRINMCGLTTQNLDHVAQAIHDAVTSIPSH 217
T + V ++ +K +YL+++ GR++MCGLT N D+VA+AIHDAVT +P
Sbjct: 398 TPEHVDYLKEKWSIYLVKAGGRMSMCGLTESNCDYVAEAIHDAVTKLPFK 447
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 2e-75
Identities = 61/155 (39%), Positives = 84/155 (54%), Gaps = 9/155 (5%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
YR + +P+VL V+QA N +Y PV G+ SF A ++ G LR+
Sbjct: 50 VYRDDADQPFVLECVKQATLGT------NMDYAPVTGIASFVEEAQKLCFGPT-CAALRD 102
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRIL-NYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW 134
GR QTL GTGALR+G + L+R + N Y + NH +F AG E Y Y+
Sbjct: 103 GRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGM-ELTPYSYY 161
Query: 135 NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+P + ++ GM E L AP+ SVI++HACAHNPT
Sbjct: 162 DPATKGLNLAGMLECLDKAPEGSVILVHACAHNPT 196
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} Length = 409 | Back alignment and structure |
|---|
Score = 76.5 bits (189), Expect = 1e-16
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T +QV + ++H+Y+ +GR + GL + N+++V+QAIH+
Sbjct: 366 TREQVELLRSEYHIYMTLNGRAAVSGLNSTNVEYVSQAIHNVT 408
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 212 bits (542), Expect = 1e-67
Identities = 34/156 (21%), Positives = 53/156 (33%), Gaps = 11/156 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
A EE L V++ L DS + Y P+ G+ F AA + G P E
Sbjct: 47 AIHDEEGNLVFLKTVKEEYLSL--SDSEHVGYAPIAGIPDFLCAAEKECFGNF-RP---E 100
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
G + T GTG + + W +R++ + G Y ++
Sbjct: 101 GHIRSIATAGGTGGIHHLIHNYTEP--GDEVLTADWYWGAYRVICSDTGR-TLVTYSLFD 157
Query: 136 PEKRA--VDFTGMYEDLVNAPDNSVIILHACAHNPT 169
F +L N V+I + +NPT
Sbjct: 158 EHNNFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPT 193
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} Length = 418 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 6e-13
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 3/48 (6%)
Query: 170 AQQVAHMVDKHH---VYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
A + + K H + L RI CG+ + +A+ I++A+ S+
Sbjct: 368 ANAICEELKKEHIYVIALANGIRIAACGIPKCQMTGLAEKIYNAMKSL 415
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 3e-41
Identities = 25/154 (16%), Positives = 53/154 (34%), Gaps = 7/154 (4%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
++ K + +L D+ Y P G+E + +L + +
Sbjct: 56 MATNKDGKM-FASSLDAMFNDLTPDE--IFPYAPPQGIEELRDLWQQKMLRDN-PELSID 111
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
+ + T + T L + + T + W N++LVF + Y ++
Sbjct: 112 NMSRPIVTNALTHGLSLVGDLFVN--QDDTILLPEHNWGNYKLVFNTRNGANLQTYPIFD 169
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169
+ + E L + + VI++ +NPT
Sbjct: 170 KDGH-YTTDSLVEALQSYNKDKVIMILNYPNNPT 202
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} Length = 430 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 4e-07
Identities = 9/51 (17%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 169 TAQQVA-HMVDKHHVYLL----RSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
+ + H++DK+ + ++ RI + ++ HV +I A+ +
Sbjct: 379 DPEALRKHLIDKYSIGVIALNATDIRIAFSCVEKDDIPHVFDSIAKAIDDL 429
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 100.0 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 100.0 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.97 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.97 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.97 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.96 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.95 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.95 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.95 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.94 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.94 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.94 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.94 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.93 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.93 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.92 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.91 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.9 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.9 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.9 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.89 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.89 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.89 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.89 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.89 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.88 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.88 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.88 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.88 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.88 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.88 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.88 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.88 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.88 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.88 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.87 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.87 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.87 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.87 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.87 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.87 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.87 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.86 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.86 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.86 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.86 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.86 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.86 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.86 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.86 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.86 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.86 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.86 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.85 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.85 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.85 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.84 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.83 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.83 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.83 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.83 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.83 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.82 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.82 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.82 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.71 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.81 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.81 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.81 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.81 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.81 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.81 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.81 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.8 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.8 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.8 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.8 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.79 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.78 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.77 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 99.76 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 99.74 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.73 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.73 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.72 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 99.71 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.68 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 99.68 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.68 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 99.67 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.67 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 99.67 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 99.67 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 99.66 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.66 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.66 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 99.66 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.66 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.65 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.65 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.65 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 99.64 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 99.64 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.64 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.64 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.64 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.63 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 99.63 | |
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 99.63 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 99.62 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.62 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.62 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 99.62 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.62 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 99.6 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.6 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 99.59 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 99.59 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.59 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.59 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.57 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 99.57 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.57 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 99.57 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.57 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.56 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.55 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.55 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.55 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 99.54 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 99.54 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.53 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 99.53 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.51 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.51 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.51 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.51 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.51 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.5 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 99.5 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.49 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.48 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.48 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.48 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.47 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.47 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.47 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.46 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.45 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.45 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.45 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.44 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.44 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 99.44 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.43 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.43 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.42 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.39 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.39 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.39 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.38 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.38 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.38 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.38 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.37 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.37 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.37 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.37 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.37 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.37 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 99.36 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.36 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 99.36 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.35 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.35 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.35 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.34 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.33 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.33 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.33 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.33 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.33 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.33 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.32 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.31 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.3 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.3 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.3 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.29 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.29 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.29 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.28 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.28 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.27 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.27 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.26 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.26 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.25 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.24 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.24 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.23 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.21 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.21 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.19 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.19 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.18 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.18 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.15 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.14 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.13 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.1 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.09 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.09 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.06 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 99.06 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.05 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.03 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.02 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.01 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.01 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 99.0 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.0 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 98.93 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 98.68 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 98.64 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 97.96 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 98.15 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 98.13 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 97.37 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 97.18 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 96.93 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 96.77 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 96.76 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 96.74 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 96.71 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 94.14 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 88.44 |
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=295.48 Aligned_cols=198 Identities=37% Similarity=0.597 Sum_probs=173.2
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
+.++||||+|+|+|++|+++++++|++|.+++.++ +.+++|+|+.|+++||+++++++++ .+ ...+++..++|.|
T Consensus 43 ~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~-~~~~~Y~p~~G~p~lr~aia~~~~g-~~---~~~~~~~~~qt~g 117 (420)
T 4h51_A 43 KGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDM-NLDYEYLPISGYQPFIDEAVKIIYG-NT---VELENLVAVQTLS 117 (420)
T ss_dssp CSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHT-TCCCCCCCTTCCHHHHHHHHHHHHC-------CGGGEEEEEEEH
T ss_pred CCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcC-CCCCCCCCcCChHHHHHHHHHHhcC-CC---ccccccceeeecC
Confidence 45689999999999999999999999999888765 4567899999999999999999998 65 3346677789999
Q ss_pred ChhHHHHHHHHHHH--hcCCCeEEecCCCchhHHHHHHHhCCCc-ceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 86 GTGALRVGAEFLHR--ILNYTTFYYSKPTWENHRLVFLNAGFTE-AREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 86 ~~~al~~~~~~l~~--l~~gd~V~i~~P~y~~y~~~~~~~g~~~-~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
+++|+.+++.++.. ++|||+||+|+|+|++|..+++.+|+ + +..+++++.+.+.+|++.+.+++...+++++++++
T Consensus 118 gtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y~~i~~~aG~-~~V~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~vll~ 196 (420)
T 4h51_A 118 GTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNHYGVVKAAGW-KNICTYAYYDPKTVSLNFEGMKKDILAAPDGSVFILH 196 (420)
T ss_dssp HHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHHHHHHHHTTC-CCEEEEECEEGGGTEECHHHHHHHHHHSCSSCEEEEE
T ss_pred chHHHHHHHHHHHHhcCCCCCEEEEecCCchhHHHHHHHcCC-eEEEeeccccccccCCCHHHHHHHHhccCCCcEEEEe
Confidence 99999998887643 36899999999999999999999999 6 45677877777888999999999887788999999
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHH
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~ 211 (218)
+|||||||. +|++++++|++++|+| ++|.+|.+++.+..+.+++...
T Consensus 197 ~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D--~~Y~~~~~~~~~~~~~~~~~~~ 251 (420)
T 4h51_A 197 QCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFD--SAYQGYASGSLDTDAYAARLFA 251 (420)
T ss_dssp SSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--ESCTTTTTSCHHHHTHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCceEeee--hhhhhhccCCcccchHHHHhHH
Confidence 999999997 7999999999999999 9999999999999988876553
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-36 Score=263.56 Aligned_cols=189 Identities=23% Similarity=0.361 Sum_probs=161.4
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHh-hcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELA-ADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~-~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
..++|||++|.|+|++|+++++++|++|.+ +. +. +..++|+|+.|+++||+++++++++ .++..+.++++.+++|.
T Consensus 28 ~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~~~~~~~~~i~i~~t~ 104 (405)
T 3k7y_A 28 CEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTEN-YKEKPYLLGNGTEDFSTLTQNLIFG-NNSKYIEDKKICTIQCI 104 (405)
T ss_dssp CSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHH-CCCCCCCTTSSCHHHHHHHHHHHHC-SSCTTTTTTCEEEEEEE
T ss_pred CcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCC-CCCCCCCCCCCcHHHHHHHHHHHcC-CCCccccccceEEEEcC
Confidence 357899999999999999999999999987 64 33 3578899999999999999999988 77665667776668999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++..+.| |+|++++|+|++|..+++.+|+ +++.+|++.++.+++|++.+++++.+.+++..++++++
T Consensus 105 G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~ 182 (405)
T 3k7y_A 105 GGTGAIFVLLEFLKMLNV-ETLYVTNPPYINHVNMIESRGF-NLKYINFFDYNLIDINYDLFLNDLRNIPNGSSVILQIS 182 (405)
T ss_dssp HHHHHHHHHHHHHHTTTC-CEEEEESSCCHHHHHHHHTTTC-EEEEECCEETTTTEECHHHHHHHHHHSCSSCEEEECCS
T ss_pred chHHHHHHHHHHHHhcCC-CEEEEeCCCCHhHHHHHHHcCC-eEEEEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCC
Confidence 999999999998743338 9999999999999999999999 99999986555688999999999975434456677666
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHH
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLD 201 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~ 201 (218)
||||||. +|+++|++|+++||+| ++|.+|.+++.+
T Consensus 183 ~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~D--e~Y~~l~~~~~~ 225 (405)
T 3k7y_A 183 CYNPCSVNIEEKYFDEIIEIVLHKKHVIIFD--IAYQGFGHTNLE 225 (405)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHCCEEEEE--ESCTTTSSSSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCeEEEEe--cCcccccCCCcc
Confidence 7999997 6889999999999999 999999987543
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=230.67 Aligned_cols=188 Identities=35% Similarity=0.601 Sum_probs=160.8
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
+..+|||++|.|.++++++++++.|++|..+.+++ ...++|.+..|.++||+++++++.+ .++..++++++.+++|.|
T Consensus 48 ~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~l~~-~~~~~~~~~~~~i~~t~G 125 (420)
T 4f4e_A 48 RPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEA-GLPRGYLPIDGIAAYDASVQKLLLG-DDSPLIAAGRVVTAQALG 125 (420)
T ss_dssp CSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-CCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEEEH
T ss_pred CCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhcc-CCCCCCCCCCCcHHHHHHHHHHhcC-CCccccccCceEEEECCc
Confidence 45789999999999999888889999998887754 3567899999999999999999977 654333566333579999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.++++++..++|||+|++++|+|++|...++..|+ +++.+++...+.+.+|++.+++.+++.+++++++++++|
T Consensus 126 ~t~al~~~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p 204 (420)
T 4f4e_A 126 GTGALKIGADFLRTLNPKAKVAISDPSWENHRALFDMAGF-EVVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACC 204 (420)
T ss_dssp HHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHTTC-CEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSS
T ss_pred cHHHHHHHHHHHHHhCCCCEEEEeCCCcHhHHHHHHHcCC-eEEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCC
Confidence 9999999966544478999999999999999999999999 999999854556788999999999765566788888999
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|+++|++|++++|+| ++|.++.++
T Consensus 205 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D--e~y~~~~~~ 243 (420)
T 4f4e_A 205 HNPTGVDLNDAQWAQVVEVVKARRLVPFLD--IAYQGFGES 243 (420)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--ESCTTSSSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCcEEEEc--cccccccCC
Confidence 999996 6889999999999999 999999986
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=228.13 Aligned_cols=199 Identities=32% Similarity=0.559 Sum_probs=166.0
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhh-cCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAA-DDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.+|||++|+|.|..+++++.+.|++|+.++.+ +....++|.+..|.++||+++++++++ .....+++++|.+++|.|+
T Consensus 50 ~~i~l~~g~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~l~g-~~~~~~~~~~i~~~~t~gg 128 (448)
T 3meb_A 50 KKVNLGVGAYRDESGKPWILPAVKEAEAIISSDLSKYNKEYPPVAGFPLFLEAAQFLMFG-KDSKAAQEGRIASCQSLSG 128 (448)
T ss_dssp TCEEESSCCCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEESHH
T ss_pred CeEEeecccccCCCCCEechHHHHHHHHHHhhcccCCCCCCCCCcchHHHHHHHHHHhcC-CCccccCcCcEEEEECCcH
Confidence 47999999999999989999999999877762 123567899999999999999999977 5432233677765569999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH----HhCCCcceeEeccCCc-CccccHHHHHHHHhcCCCCcEEEE
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL----NAGFTEAREYRYWNPE-KRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~----~~g~~~~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
++|+.+++.++..++|||+|++++|+|++|..+++ ..|+ +++.+++++.+ .+.+|++.+++++++.++++++++
T Consensus 129 t~al~l~~~~~~~~~~gd~Vlv~~p~~~~~~~~~~~~~~~~G~-~v~~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~ 207 (448)
T 3meb_A 129 TGSLHIGFEFLHLWMPKAEFYMPSTTWPNHYGIYDKVFNKLKV-PYKEYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLF 207 (448)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEESSCCTHHHHHHHHHHCTTTS-CCEEECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCHhHHHHHHhhHHhCCC-eEEEEeccccccCCCcCHHHHHHHHHhCCCCcEEEE
Confidence 99999865544447899999999999999999999 9999 99999986555 578899999999986545678888
Q ss_pred cccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHH
Q psy6266 162 HACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDA 210 (218)
Q Consensus 162 ~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~ 210 (218)
+++||||||. +|+++|++|++++|+| ++|.++.++.++.....+...
T Consensus 208 ~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~D--eay~~~~~~~~~~~~~~~~~~ 262 (448)
T 3meb_A 208 HACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFD--SAYQGFATGSFEADAFAVRMF 262 (448)
T ss_dssp ESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--ESCTTTSSSCHHHHTHHHHHH
T ss_pred eCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe--cccccccCCCcccCchhHHHH
Confidence 8999999997 5899999999999999 999999999887666666544
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=219.17 Aligned_cols=197 Identities=39% Similarity=0.715 Sum_probs=164.0
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..+|||++|.|.|..+.+++.+.+++|+.++..+ ....+|.+..|.++||+++++++.+ ..+..+++++|.+++|.|+
T Consensus 28 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~~i~~v~t~G~ 105 (401)
T 7aat_A 28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK-KMDKEYLPIAGLADFTRASAELALG-ENSEAFKSGRYVTVQGISG 105 (401)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-TCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEEEHH
T ss_pred CCceeeeeeeEECCCCCEechHHHHHHHHHhccc-ccccCCCCCCCCHHHHHHHHHHhcC-CCccccccCceEEEecCcc
Confidence 3589999999888888788888999998877653 3567899999999999999999977 6555556788754559999
Q ss_pred hhHHHHHHHHHHH-hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHR-ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~-l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++|+.++++++.. ++|||+|++++|+|++|...++..|+ +++.+|+...+.+++|++.+.+++++.++++.++++++|
T Consensus 106 ~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p 184 (401)
T 7aat_A 106 TGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGL-QLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACA 184 (401)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTC-EEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSS
T ss_pred hHHHHHHHHHHHHhccCCCEEEEcCCCchhHHHHHHHcCC-eeEeeeeeccccCccCHHHHHHHHHhCCCCcEEEEeCCC
Confidence 9999998876632 37899999999999999999999999 999999865456788999999988765556777788999
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHH
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIH 208 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~ 208 (218)
|||||. +|+++|++|++++|+| ++|.++.++..+....++.
T Consensus 185 ~NPtG~~~~~~~l~~i~~~~~~~~~~li~D--eay~~~~~~~~~~~~~~~~ 233 (401)
T 7aat_A 185 HNPTGVDPRQEQWKELASVVKKRNLLAYFD--MAYQGFASGDINRDAWALR 233 (401)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--ESCTTTTTSCHHHHTHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhCCcEEEEc--cccccccCCCccccHHHHH
Confidence 999995 7889999999999999 9999999987654444443
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-28 Score=211.14 Aligned_cols=188 Identities=31% Similarity=0.520 Sum_probs=157.9
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHH-HhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKE-LAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
...+|||++|.|.|+++.+++++.|++|..+ ..+. ...++|.+..|.++||+++++++.+ .++..++++++.+++|.
T Consensus 25 ~~~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~-~~~~~~~~~~~~i~~t~ 102 (397)
T 3fsl_A 25 RSDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQP-HGASLYLPMEGLNCYRHAIAPLLFG-ADHPVLKQQRVATIQTL 102 (397)
T ss_dssp CSCCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSC-CCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEES
T ss_pred CCCeEEEeeeEEECCCCCccCcHHHHHHHHhhccCc-cccccCCCCCchHHHHHHHHHHHhc-CCcccccccceEEEEcC
Confidence 3468999999998899988888999999888 7753 3467899999999999999999976 55432356632346999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++..++|||+|++++|+|++|...++..|+ +++.+++...+.+.+|++.+++.+++..+++.+++.++
T Consensus 103 g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~ 181 (397)
T 3fsl_A 103 GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-EVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPC 181 (397)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEESSCCHHHHHHHHHTTC-CEEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSS
T ss_pred CcHHHHHHHHHHHHhcCCCCeEEEeCCCchhHHHHHHHcCC-ceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCC
Confidence 99999999876544468999999999999999999999999 99999885445678899999999976545677888899
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 182 p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 221 (397)
T 3fsl_A 182 CHNPTGADLTNDQWDAVIEILKARELIPFLD--IAYQGFGAG 221 (397)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--ESCTTSSSC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHhCCEEEEEe--cCchhhccC
Confidence 9999996 6889999999999999 999999886
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=206.59 Aligned_cols=190 Identities=38% Similarity=0.687 Sum_probs=156.7
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHH-HhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKE-LAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~-~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|..+|||+.|.|.|.++++++++.|++|..+ ..+. ...++|.+..|.++||+++++++.+ ..+..+++++|.+++|
T Consensus 27 ~~~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~-~~~~~y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~~i~~~~t 104 (412)
T 1yaa_A 27 QRATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDS-SYNHEYLGITGLPSLTSNAAKIIFG-TQSDALQEDRVISVQS 104 (412)
T ss_dssp CCSSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCT-TCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEE
T ss_pred CCCCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCc-ccccCCCCCCCcHHHHHHHHHHHhc-CCCCCCCcceEEEEec
Confidence 46788999999988888888889999999888 7643 2456799999999999999999965 5443345677653349
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++..+.|||+|++++|+|++|...++..|+ +++.++.+.++.+.+|++.+++.+.+.++++++++.+
T Consensus 105 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~ 183 (412)
T 1yaa_A 105 LSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-KTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHS 183 (412)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-CEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEEC
T ss_pred cchHhHHHHHHHHHHHhCCCCEEEEeCCCCccHHHHHHHcCc-eEEEEeeecCCCCccCHHHHHHHHHhCCCCCEEEEeC
Confidence 999999999865554467999999999999999999999999 8999987433357789999999987543346777778
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|++|++++|.| ++|.++.++.
T Consensus 184 ~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~~ 225 (412)
T 1yaa_A 184 CAHNPTGLDPTSEQWVQIVDAIASKNHIALFD--TAYQGFATGD 225 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--ESCTTTSSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe--cccccccCCc
Confidence 99999997 6889999999999999 9999998875
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=3.7e-27 Score=204.80 Aligned_cols=189 Identities=31% Similarity=0.518 Sum_probs=153.4
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.|.++++.+++++.|++|..+.+++ ...++|.+..|.++||+++++++.+ .++..+++++|.+++|.
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~-~~~~~~~~~~v~~~~~~ 101 (396)
T 2q7w_A 24 ERPGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-ETTKNYLGIDGIPEFGRCTQELLFG-KGSALINDKRARTAQTP 101 (396)
T ss_dssp ----CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH-CCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEES
T ss_pred CCCCceecccccccCCCCCccCcHHHHHHHHhhcCc-ccccCCCCCCCCHHHHHHHHHHHhc-CCCCccccccEEEEecc
Confidence 356789999999888888778889999998876644 2456899999999999999999966 54332346776433599
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++..+.|||+|++++|+|+.|...++..|+ +++.++...++.+.+|++.+++.+.+.++++++++.++
T Consensus 102 g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~ 180 (396)
T 2q7w_A 102 GGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-EVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGC 180 (396)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTC-EEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECS
T ss_pred cchhhHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHcCC-ceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCC
Confidence 99999999988765457999999999999999999999999 89999874334577899999999975434567777789
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 181 p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 220 (396)
T 2q7w_A 181 CHNPTGIDPTLEQWQTLAQLSVEKGWLPLFD--FAYQGFARG 220 (396)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--ESCTTSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe--cccccccCC
Confidence 9999996 6889999999999999 999999886
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.4e-27 Score=206.59 Aligned_cols=192 Identities=35% Similarity=0.614 Sum_probs=152.7
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
..++|||++|.|.|..+.+.+.+.++++ . . ...++|.+..|.++||+++++++++ .....+++++|..++|.|
T Consensus 40 ~~~~i~l~~g~~~d~~~~~~v~~a~~~a----~-~-~~~~~y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~~i~~~~~~~ 112 (409)
T 4eu1_A 40 AKRKVNLSIGVYRDDADQPFVLECVKQA----T-L-GTNMDYAPVTGIASFVEEAQKLCFG-PTCAALRDGRIASCQTLG 112 (409)
T ss_dssp CSSCEECCCSSCCCTTSCCCCCHHHHTC----C-C-CSCCCCCCTTCCHHHHHHHHHHHHC-SSCHHHHTTCEEEEEESH
T ss_pred CcCceeeeeeEEECCCCCEeecHHHHhc----C-c-cccccCCCCCCcHHHHHHHHHHHcC-CCchhhccCceeeeeccc
Confidence 3578999999876666655556555554 2 2 3567899999999999999999977 543323367776568999
Q ss_pred ChhHHHHHHHHHHH-hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 86 GTGALRVGAEFLHR-ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 86 ~~~al~~~~~~l~~-l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++++.++..++.. +++||+|++++|+|++|...++..|+ +++.+++...+.+.+|++.+++.+++.++++.++++++
T Consensus 113 g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~ 191 (409)
T 4eu1_A 113 GTGALRIGGDLLNRFVANCNRIYGPDVGYPNHESIFAKAGM-ELTPYSYYDPATKGLNLAGMLECLDKAPEGSVILVHAC 191 (409)
T ss_dssp HHHHHHHHHHHGGGTSSSCCEEEEESSCCTHHHHHHHHTTC-EEEEECCEETTTTEECHHHHHHHHHHSCTTCEEEEESS
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHcCC-eEEEEEeecCcCCcCcHHHHHHHHHhCCCCcEEEEECC
Confidence 99999987655433 46899999999999999999999999 99999885455678899999999975434567777789
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHH
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAI 207 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~ 207 (218)
||||||. +|+++|++|++++|+| ++|.++.++..+.....+
T Consensus 192 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D--e~y~~~~~~~~~~~~~~~ 240 (409)
T 4eu1_A 192 AHNPTGVDPTHDDWRQVCDVIKRRNHIPFVD--MAYQGFATGQLDYDAFVP 240 (409)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--ESCTTTTTSCHHHHTHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe--ccccccccCCcccchHHH
Confidence 9999997 5899999999999999 999999998754333333
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-27 Score=208.77 Aligned_cols=181 Identities=16% Similarity=0.243 Sum_probs=148.6
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|+++|||++|.|.|+++++++++.|++|..++... ..++|.+..|.++||+++++++++ ..+.. .+++ +++|.|
T Consensus 37 ~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~-~~~~~-~~~~--i~~t~g 110 (418)
T 3rq1_A 37 RENVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDS--EHVGYAPIAGIPDFLCAAEKECFG-NFRPE-GHIR--SIATAG 110 (418)
T ss_dssp GGGCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHH--HHHSCCCTTCCHHHHHHHHHHHHG-GGCCS-SEEE--EEEESH
T ss_pred CCCeEECCCCcccCCCCCccccHHHHHHHHHhccc--ccCCCCCCCChHHHHHHHHHHHhc-ccCcc-cccc--EEECCc
Confidence 67899999999999999999999999987765432 346799999999999999999976 44321 1124 469999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC--CCCcEEEEcc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA--PDNSVIILHA 163 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~--~~~~~iil~~ 163 (218)
+++|+.++++++ ++|||+|++++|+|++|...++..|+ +++.+++..+ .+.+|++.+++.+++. .+.+.+++.+
T Consensus 111 ~~~al~~~~~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~v~~~~~-~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 186 (418)
T 3rq1_A 111 GTGGIHHLIHNY--TEPGDEVLTADWYWGAYRVICSDTGR-TLVTYSLFDE-HNNFNHEAFQNRVNELAAKQTNVVVIFN 186 (418)
T ss_dssp HHHHHHHHHHHH--SCTTCEEEEESSCCTHHHHHHHHTTC-EEEEECSBCT-TSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred hHHHHHHHHHHh--cCCCCEEEECCCCchhHHHHHHHcCC-EEEEEeeeCC-CCCcCHHHHHHHHHHhhccCCCEEEEEe
Confidence 999999999877 78999999999999999999999999 9999988533 3688999999988642 1223356667
Q ss_pred cC-CCCcHH--------HHHHHhh------cCeEEEeeCCceeeccCCCC
Q psy6266 164 CA-HNPTAQ--------QVAHMVD------KHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p-~NPTG~--------~l~~l~~------~~~i~ii~D~r~~y~~l~~~ 198 (218)
+| |||||. +|+++|+ +|++++|+| ++|.++.++
T Consensus 187 ~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~D--e~y~~~~~~ 234 (418)
T 3rq1_A 187 TPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGID--VAYLDYSGE 234 (418)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEE--CTTGGGSSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEe--cccccccCC
Confidence 88 999997 5667777 899999999 999998876
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.5e-26 Score=202.26 Aligned_cols=191 Identities=51% Similarity=0.898 Sum_probs=156.2
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.|.++++++++++.|++|..+..++....++|.+..|.++||+++++++.+ ..+..+.+++|.+++|.
T Consensus 28 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~y~~~~g~~~lr~~la~~~~~-~~~~~~~~~~v~~~~t~ 106 (412)
T 1ajs_A 28 PDPRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALG-DDSPALQEKRVGGVQSL 106 (412)
T ss_dssp CCTTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEEE
T ss_pred CCCCceeeccceecCCCCCccccHHHHHHHHHhhhChhhccCCCCCCCCHHHHHHHHHHHhc-CCCCccCCCcEEEEECC
Confidence 36789999999987788777888999999887763212456899999999999999999966 54433456776423499
Q ss_pred cChhHHHHHHHHHHHhcCC-----CeEEecCCCchhHHHHHHHhCCCc-ceeEeccCCcCccccHHHHHHHHhcCCCCcE
Q psy6266 85 SGTGALRVGAEFLHRILNY-----TTFYYSKPTWENHRLVFLNAGFTE-AREYRYWNPEKRAVDFTGMYEDLVNAPDNSV 158 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~g-----d~V~i~~P~y~~y~~~~~~~g~~~-~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 158 (218)
|+++|+.++++++..+.|| |+|++++|+|++|...++..|+ + ++.++...++.+.+|++.+++.+.+..++++
T Consensus 107 gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~ 185 (412)
T 1ajs_A 107 GGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF-KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSI 185 (412)
T ss_dssp HHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTC-SCEEEEECEETTTTEECHHHHHHHHHHSCTTCE
T ss_pred CcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHHHHHHHHHcCC-ceeEEEeeecCCCCccCHHHHHHHHHhCCCCcE
Confidence 9999999987654446799 9999999999999999999999 8 9999874334567899999998875434567
Q ss_pred EEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 159 IILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 159 iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+++.++||||||. +|.++|++|++++|.| ++|.++.++.
T Consensus 186 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~y~~~~~~~ 232 (412)
T 1ajs_A 186 FVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFD--SAYQGFASGN 232 (412)
T ss_dssp EEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--ESCTTTTTSC
T ss_pred EEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE--cccccccCCc
Confidence 7767899999996 6889999999999999 9999998875
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.2e-26 Score=197.61 Aligned_cols=186 Identities=27% Similarity=0.466 Sum_probs=153.9
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.|.++++.+++++.|++|..+..+. ...++|.+..|.++||+++++++.+ .+ .++++|..++|.
T Consensus 24 ~~~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~-~~---~~~~~v~~~~~~ 98 (394)
T 2ay1_A 24 PRQGKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-ETTKTYAGLSGEPEFQKAMGELILG-DG---LKSETTATLATV 98 (394)
T ss_dssp CCTTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-CCCCCCCCSSCCHHHHHHHHHHHHG-GG---CCGGGEEEEEEE
T ss_pred CCccccccccceeeCCCCCccCcHHHHHHHHHhcCC-cccCCCCCCCCcHHHHHHHHHHHhC-CC---CCcccEEEEecC
Confidence 356789999999877777778889999998877643 2466899999999999999999865 42 245676433599
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++..+.|||+|++++|+|+.|...++..|+ +++.++....+.+.+|++.+++.+++.++++.+++.++
T Consensus 99 g~~~a~~~~~~~~~~~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~ 177 (394)
T 2ay1_A 99 GGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-PVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGC 177 (394)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTC-CEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESS
T ss_pred CchhHHHHHHHHHHhcCCCCEEEEcCCCChhHHHHHHHcCC-ceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCC
Confidence 99999999988765456999999999999999999999999 89999874334567899999999975434467777789
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 178 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 217 (394)
T 2ay1_A 178 CHNPTGANLTLDQWAEIASILEKTGALPLID--LAYQGFGDG 217 (394)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--ECCTTSSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEe--cCccccccC
Confidence 9999996 6889999999999999 999999876
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=201.36 Aligned_cols=181 Identities=13% Similarity=0.117 Sum_probs=151.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|.++|||++|.+ +..|++++++.|++|..+.++. ...++|.+..|.++||+++++++.+ . +..+.+++| ++|
T Consensus 51 ~~~~~~i~l~~g~~-~~~g~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~-~-~~~~~~~~v--~~t 124 (427)
T 3dyd_A 51 NPNKTMISLSIGDP-TVFGNLPTDPEVTQAMKDALDS-GKYNGYAPSIGFLSSREEIASYYHC-P-EAPLEAKDV--ILT 124 (427)
T ss_dssp CTTSCCEECCCSCT-TTTSSSCCCHHHHHHHHHHHHH-CCSSSCCCTTCCHHHHHHHHHHHCB-T-TBCCCGGGE--EEE
T ss_pred cCCCCEEeCCCcCC-CccCCCCCCHHHHHHHHHHHhc-CcCCCCCCCCCcHHHHHHHHHHHhh-c-CCCCChHHE--EEe
Confidence 45778999999973 4556788999999998887754 3456899999999999999999976 5 333556665 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ ++|||+|++++|+|++|...++..|+ +++.+++...+.+.+|++.+++.+.+ ++.+++.+
T Consensus 125 ~g~t~al~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~i~ 198 (427)
T 3dyd_A 125 SGCSQAIDLCLAVL--ANPGQNILVPRPGFSLYKTLAESMGI-EVKLYNLLPEKSWEIDLKQLEYLIDE---KTACLIVN 198 (427)
T ss_dssp SSHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTC-EEEEEEEEGGGTTEECHHHHHSSCCT---TEEEEEEE
T ss_pred cCcHHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHHHHcCC-EEEEEecccccCCCCCHHHHHHHhcc---CCCEEEEE
Confidence 99999999999887 67999999999999999999999999 99999986555677899999887743 34555557
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|+++|+++++++|.| ++|.++.++
T Consensus 199 ~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~D--eay~~~~~~ 239 (427)
T 3dyd_A 199 NPSNPCGSVFSKRHLQKILAVAARQCVPILAD--EIYGDMVFS 239 (427)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE--CTTTTCBCS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEE--cCchhhccC
Confidence 89999997 7889999999999999 999988764
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=194.33 Aligned_cols=176 Identities=15% Similarity=0.114 Sum_probs=143.1
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|+|+.|.+ ++++++.+++|..+..+. ...+|.+..|.++||+++++++.. ..+..+++++| ++|.
T Consensus 29 ~~~~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~i--~~t~ 98 (385)
T 1b5p_A 29 QGVDLVALTAGEP-----DFDTPEHVKEAARRALAQ--GKTKYAPPAGIPELREALAEKFRR-ENGLSVTPEET--IVTV 98 (385)
T ss_dssp TTCCCEECCCSSC-----SSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-TTCCCCCGGGE--EEES
T ss_pred cCCCEEEecCCCC-----CCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCChHHE--EEcC
Confidence 4678899999952 345678899887776643 345799999999999999999965 44444566765 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.++...++.+.+|++.+++.+. +++.+++.++
T Consensus 99 g~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~ 172 (385)
T 1b5p_A 99 GGSQALFNLFQAI--LDPGDEVIVLSPYWVSYPEMVRFAGG-VVVEVETLPEEGFVPDPERVRRAIT---PRTKALVVNS 172 (385)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTC-EEEEEECCGGGTTCCCHHHHHTTCC---TTEEEEEEES
T ss_pred ChHHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHHHHcCC-EEEEeecCcccCCCCCHHHHHHhcC---CCCEEEEEeC
Confidence 9999999999877 68999999999999999999999999 9999988432456789888887764 3455556678
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|+++||+| ++|.++.++
T Consensus 173 p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 212 (385)
T 1b5p_A 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSD--EIYEHLLYE 212 (385)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBSS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEE--ccchhcccC
Confidence 9999996 6889999999999999 999988774
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-25 Score=194.44 Aligned_cols=177 Identities=11% Similarity=0.064 Sum_probs=144.0
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|. + ++.+++.|++|..+.+++ ...++|++..|.++||+++++++.. ..+..+++++| ++|.
T Consensus 55 ~~~~~i~l~~g~---~--~~~~~~~v~~a~~~~~~~-~~~~~Y~~~~g~~~lr~~ia~~l~~-~~g~~~~~~~v--~~t~ 125 (447)
T 3b46_A 55 QGRELINLGQGF---F--SYSPPQFAIKEAQKALDI-PMVNQYSPTRGRPSLINSLIKLYSP-IYNTELKAENV--TVTT 125 (447)
T ss_dssp TTSCCEECCCCS---C--SSCCCHHHHHHHHHHTTS-GGGGSCCCTTCCHHHHHHHHHHHTT-TTTSCCCGGGE--EEES
T ss_pred cCCCeEEccCCC---C--CCCCCHHHHHHHHHHHhC-cCCCCCCCCCCCHHHHHHHHHHHHH-hcCCCCChhhE--EEeC
Confidence 577899999995 2 345688999998877743 1356899999999999999999965 44433555665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc----------CccccHHHHHHHHhcCC
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE----------KRAVDFTGMYEDLVNAP 154 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~----------~~~~d~~~~~~~l~~~~ 154 (218)
|+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.+++...+ .+.+|++.+++.+.
T Consensus 126 G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~--- 199 (447)
T 3b46_A 126 GANEGILSCLMGL--LNAGDEVIVFEPFFDQYIPNIELCGG-KVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT--- 199 (447)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC---
T ss_pred CHHHHHHHHHHHH--cCCCCEEEEeCCCchhHHHHHHHcCC-EEEEEeCCCccccccccccccCcccCHHHHHHhhc---
Confidence 9999999999877 68999999999999999999999999 89999874321 35689998887774
Q ss_pred CCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 155 DNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 155 ~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+++.+++.++||||||. +|+++|++|++++|+| ++|.++.++
T Consensus 200 ~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~D--e~~~~~~~~ 249 (447)
T 3b46_A 200 SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISD--EVYEHLYFT 249 (447)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCS
T ss_pred cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEe--ccchhcccC
Confidence 34455555799999997 6889999999999999 999988775
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=184.82 Aligned_cols=175 Identities=15% Similarity=0.154 Sum_probs=142.2
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC---CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL---NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~---~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
|..+|||+.|. ++ +++++.|++|..+..++ .. .++|.+..|.++||+++++++.. ..+...++++| ++
T Consensus 34 ~~~~i~l~~~~---~~--~~~~~~v~~a~~~~~~~-~~~~~~~~y~~~~g~~~lr~~la~~l~~-~~g~~~~~~~i--~~ 104 (398)
T 3ele_A 34 KENVYDFSIGN---PS--IPAPQIVNDTIKELVTD-YDSVALHGYTSAQGDVETRAAIAEFLNN-THGTHFNADNL--YM 104 (398)
T ss_dssp GGGCEECCSCC---CC--SCCCHHHHHHHHHHHHH-SCHHHHHSCCCTTCCHHHHHHHHHHHHH-HHCCCCCGGGE--EE
T ss_pred CCCeEEeecCC---CC--CCCCHHHHHHHHHHHhc-CCccccCCcCCCCCcHHHHHHHHHHHHH-HhCCCCChHHE--EE
Confidence 56899999993 33 35688999998877654 11 46799999999999999999853 33323556665 59
Q ss_pred eccChhHHHHHHHHHHHhcCC-CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 83 TLSGTGALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
|.|+++|+.++++++ +.|| |+|++++|+|+.|...++..|+ +++.+|.. .+.+.+|++.+++.+. +++.+++
T Consensus 105 ~~g~~~al~~~~~~l--~~~g~d~vl~~~p~~~~~~~~~~~~g~-~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~ 177 (398)
T 3ele_A 105 TMGAAASLSICFRAL--TSDAYDEFITIAPYFPEYKVFVNAAGA-RLVEVPAD-TEHFQIDFDALEERIN---AHTRGVI 177 (398)
T ss_dssp ESSHHHHHHHHHHHH--CCSTTCEEEEESSCCTHHHHHHHHTTC-EEEEECCC-TTTSSCCHHHHHHTCC---TTEEEEE
T ss_pred ccCHHHHHHHHHHHH--cCCCCCEEEEeCCCchhhHHHHHHcCC-EEEEEecC-CcCCcCCHHHHHHHhC---cCCCEEE
Confidence 999999999999877 6899 9999999999999999999999 99999873 3456889999988775 3455555
Q ss_pred cccCCCCcHH--------HHHHHhhc------CeEEEeeCCceeeccCCCC
Q psy6266 162 HACAHNPTAQ--------QVAHMVDK------HHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 162 ~~~p~NPTG~--------~l~~l~~~------~~i~ii~D~r~~y~~l~~~ 198 (218)
.++||||||. +|+++|++ |++++|.| ++|.++.++
T Consensus 178 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~D--e~~~~~~~~ 226 (398)
T 3ele_A 178 INSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIAD--EPYREIVYD 226 (398)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEE--CTTTTCBCT
T ss_pred EcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEe--ccccccccC
Confidence 6789999997 67788988 99999999 999988765
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.4e-24 Score=192.06 Aligned_cols=182 Identities=13% Similarity=0.074 Sum_probs=140.8
Q ss_pred ceeeeeeeEEeCCCCCc-------------------------cCchHHHHHHHHHhhc-CC-CCccCcCCCCcHHHHHHH
Q psy6266 8 IHCCEIRNAYRTEECKP-------------------------WVLPVVRQAEKELAAD-DS-LNHEYLPVLGLESFSSAA 60 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~-------------------------~~~~~v~~a~~~~~~~-~~-~~~~Y~~~~G~~~lr~ai 60 (218)
.+|++++|.+..-++++ .+++.++++ .+.+.. .+ ....|.++.|.++||+++
T Consensus 65 ~~i~~~iG~~~~~~~~p~~~~~~~~~~~~~p~~i~~~~~~~~~p~~~~~~a-~~~l~~~~~~~~~~Y~~~~G~~~lr~~i 143 (500)
T 3tcm_A 65 EILYCNIGNPQSLGQQPVTFFREVLALCDHPDLLQREEIKTLFSADSISRA-KQILAMIPGRATGAYSHSQGIHGLRDAI 143 (500)
T ss_dssp SCEECSSCCGGGTTCCCCHHHHHHHHHHHSGGGGGCTTHHHHSCHHHHHHH-HHHHTTSTTSCSSSCCCTTCCHHHHHHH
T ss_pred HhhhhcCcChhhcCCCCCcHHHHHHHhhcCcccccCCCCcccCCHHHHHHH-HHHHHcCCCCcCCCcCCCcChHHHHHHH
Confidence 78999999754333322 223344444 444433 12 457899999999999999
Q ss_pred HHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh-cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCc
Q psy6266 61 TRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI-LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKR 139 (218)
Q Consensus 61 a~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l-~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~ 139 (218)
++++.+ ..+...++++| ++|.|+++++.++++++ + ++||+|++++|+|++|...++..|+ +++.+++...+.+
T Consensus 144 a~~~~~-~~g~~~~~~~i--~~t~G~~~al~~~~~~l--~~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~ 217 (500)
T 3tcm_A 144 ASGIAS-RDGFPANADDI--FLTDGASPGVHLMMQLL--IRNEKDGILVPIPQYPLYSASIALHGG-ALVPYYLNESTGW 217 (500)
T ss_dssp HHHHHH-HHSSCCCGGGE--EEESSSHHHHHHHHHHH--CCSTTEEEEEEESCCTHHHHHHHHTTC-EEEEEECBTTTTS
T ss_pred HHHHHh-hcCCCCCcccE--EEcCCHHHHHHHHHHHH--cCCCCCEEEEeCCCcHhHHHHHHHcCC-EEEEEecccccCC
Confidence 999864 44433566765 59999999999999877 5 6899999999999999999999999 9999998655557
Q ss_pred cccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 140 AVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 140 ~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+|++.+++.|++. ..+..+++.++||||||. +|+++|++|++++|.| ++|.++.++
T Consensus 218 ~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~~i~~la~~~~~~li~D--eay~~~~~~ 285 (500)
T 3tcm_A 218 GLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQYDIVKFCKNEGLVLLAD--EVYQENIYV 285 (500)
T ss_dssp BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCC
T ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe--cCccccccC
Confidence 88999999998752 113444445689999996 6888899999999999 999998774
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=182.55 Aligned_cols=176 Identities=13% Similarity=0.062 Sum_probs=142.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCC-cCCC-ceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPP-LREG-RAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~-~~~~-~v~~~ 81 (218)
..|..+|||+.|. +.+++++.|++|+.+... ...+|.+..|.++||+++++++.. ..+.. +.++ +| +
T Consensus 27 ~~g~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~---~~~~y~~~~g~~~lr~~la~~l~~-~~g~~~~~~~~~i--~ 95 (396)
T 3jtx_A 27 PEGMEAVPLHIGE-----PKHPTPKVITDALTASLH---ELEKYPLTAGLPELRQACANWLKR-RYDGLTVDADNEI--L 95 (396)
T ss_dssp CTTCCCEECSCCS-----CCSCCCHHHHHHHHHTGG---GGGSCCCTTCCHHHHHHHHHHHHH-HTTTCCCCTTTSE--E
T ss_pred ccCCCeEEeCCcC-----CCCCCCHHHHHHHHHHhh---hccCCCCCCCcHHHHHHHHHHHHH-hcCCCCCCCCCeE--E
Confidence 4688999999995 345678899999887663 356799999999999999999854 33332 3456 65 5
Q ss_pred EeccChhHHHHHHHHHHHhcCC-----CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 82 QTLSGTGALRVGAEFLHRILNY-----TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~g-----d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
+|.|+++++.++++++ +.+| |+|++++|+|+.|...++..|+ +++.+++ ..+.+.+|++.+++++.+ +
T Consensus 96 ~t~g~~~al~~~~~~~--~~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~-~~~~v~~-~~~g~~~d~~~l~~~~~~---~ 168 (396)
T 3jtx_A 96 PVLGSREALFSFVQTV--LNPVSDGIKPAIVSPNPFYQIYEGATLLGGG-EIHFANC-PAPSFNPDWRSISEEVWK---R 168 (396)
T ss_dssp EESSHHHHHHHHHHHH--CCC---CCCCEEEEEESCCHHHHHHHHHTTC-EEEEEEC-CTTTCCCCGGGSCHHHHH---T
T ss_pred EcCCcHHHHHHHHHHH--hCCCCccCCCEEEEcCCCcHhHHHHHHHcCC-EEEEeec-CCCCCccCHHHHHHhhcc---C
Confidence 9999999999999877 6786 7999999999999999999999 9999988 455566788888888864 3
Q ss_pred cEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 157 SVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 157 ~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+.+++.++||||||. +|.++|++|++++|.| ++|.++.++.
T Consensus 169 ~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~~ 217 (396)
T 3jtx_A 169 TKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASD--ECYSEIYFDG 217 (396)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEE--CTTTTCCSTT
T ss_pred cEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE--ccccccccCC
Confidence 444555689999997 5889999999999999 9999987763
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.90 E-value=9.4e-24 Score=183.35 Aligned_cols=174 Identities=13% Similarity=0.048 Sum_probs=131.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|..+|||+.|. +.+++++.|++|..+..++ ....|.+..|.++||+++++++.. ..+....+++| ++|
T Consensus 28 ~~g~~~i~l~~g~-----~~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~v--~~t 97 (391)
T 3h14_A 28 EAGRRIIHMEVGQ-----PGTGAPRGAVEALAKSLET--DALGYTVALGLPALRQRIARLYGE-WYGVDLDPGRV--VIT 97 (391)
T ss_dssp HTTCCCEECCCSS-----CSSCSCHHHHHHHHHHHC------------CCHHHHHHHHHHHHH-HHCCCCCGGGE--EEE
T ss_pred hcCCCeEEccCCC-----CCCCCCHHHHHHHHHHHhc--CCCCCCCCCChHHHHHHHHHHHHH-HhCCCCCHHHE--EEe
Confidence 3578999999994 3456688899998877743 356899999999999999999853 33333556665 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ +.|||+|++++|+|++|...++..|+ +++.++......+.+|++.+++. ++.+++.+
T Consensus 98 ~g~~~al~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~------~~~~v~i~ 168 (391)
T 3h14_A 98 PGSSGGFLLAFTAL--FDSGDRVGIGAPGYPSYRQILRALGL-VPVDLPTAPENRLQPVPADFAGL------DLAGLMVA 168 (391)
T ss_dssp SSHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHHTTC-EEEEEECCGGGTTSCCHHHHTTS------CCSEEEEE
T ss_pred cChHHHHHHHHHHh--cCCCCEEEEcCCCCccHHHHHHHcCC-EEEEeecCcccCCCCCHHHHHhc------CCeEEEEC
Confidence 99999999998877 67999999999999999999999999 99999885333455687766543 23344446
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 169 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 209 (391)
T 3h14_A 169 SPANPTGTMLDHAAMGALIEAAQAQGASFISD--EIYHGIEYE 209 (391)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE--CcchhcccC
Confidence 89999996 6889999999999999 999988765
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-23 Score=182.07 Aligned_cols=178 Identities=11% Similarity=0.013 Sum_probs=142.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~ 82 (218)
.++..+|||+.|. +++++++.|++|+.+.+.+ ...++|.+..|.++||+++++++.. ..+....+ ++| ++
T Consensus 20 ~~~~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~l~~~la~~~~~-~~~~~~~~~~~i--~~ 90 (410)
T 3e2y_A 20 AADPSVVNLGQGF-----PDISPPSYVKEELSKAAFI-DNMNQYTRGFGHPALVKALSCLYGK-IYQRQIDPNEEI--LV 90 (410)
T ss_dssp TTSTTSEECSSCC-----CCSCCCHHHHHHHHHHHTC-GGGGSCCCTTCCHHHHHHHHHHHHH-HHTSCCCTTTSE--EE
T ss_pred hcCCCeEEecCCC-----CCCCCCHHHHHHHHHHHhC-ccccCCCCCCChHHHHHHHHHHHHH-HhCCCCCCCCCE--EE
Confidence 3567899999995 3456789999998887753 2356899999999999999999853 33333445 565 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccC---------CcCccccHHHHHHHHhcC
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN---------PEKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~---------~~~~~~d~~~~~~~l~~~ 153 (218)
|.|+++++.++++++ +++||+|++++|+|+.|...++..|+ +++.+++.. ...+.+|++.+++.+.
T Consensus 91 ~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~-- 165 (410)
T 3e2y_A 91 AVGAYGSLFNSIQGL--VDPGDEVIIMVPFYDCYEPMVRMAGA-VPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFS-- 165 (410)
T ss_dssp ESHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECEECCCCSSCCBGGGEECCHHHHHTTCC--
T ss_pred eCCcHHHHHHHHHHh--cCCCCEEEEeCCCchhhHHHHHHcCC-EEEEEeccccccccccccccCCcCCHHHHHhhcC--
Confidence 999999999998877 67999999999999999999999999 899988742 1335578888887764
Q ss_pred CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 154 PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+++.+++.++||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 166 -~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 215 (410)
T 3e2y_A 166 -SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISD--EVYEWLVYT 215 (410)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCT
T ss_pred -CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEE--hhhhhcccC
Confidence 34555556789999996 6889999999999999 999987764
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.3e-23 Score=180.88 Aligned_cols=177 Identities=14% Similarity=0.112 Sum_probs=143.5
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.+ .+++++.|++|..+.+.. ....+|.+..|.++||+++++++.. ..+...++++| ++|.
T Consensus 42 ~g~~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~lr~~la~~~~~-~~g~~~~~~~i--~~t~ 112 (437)
T 3g0t_A 42 TGTKFCRMEMGVP-----GLPAPQIGIETEIQKLRE-GVASIYPNLDGLPELKQEASRFAKL-FVNIDIPARAC--VPTV 112 (437)
T ss_dssp HTCCCEECCCCSC-----CSCCCHHHHHHHHHHHHH-TGGGSCCCTTCCHHHHHHHHHHHHH-HHCCCCCGGGE--EEES
T ss_pred cCCCEEeccCcCC-----CCCCCHHHHHHHHHHHhC-CcCcCCCCCCChHHHHHHHHHHHHH-hhCCCCCcccE--EEeC
Confidence 4788999999952 356789999998877754 2227899999999999999999864 33333556665 5999
Q ss_pred cChhHHHHHHHHHHHh--cCCC--eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEE
Q psy6266 85 SGTGALRVGAEFLHRI--LNYT--TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVII 160 (218)
Q Consensus 85 G~~~al~~~~~~l~~l--~~gd--~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ii 160 (218)
|+++|+.++++++ + .+|| +|++++|+|++|...++..|+ +++.++.. ++.+.+|++.+++.+++ +++.++
T Consensus 113 g~t~al~~~~~~l--~~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~-~~~~v~~~-~~~~~~d~~~l~~~l~~--~~~~~v 186 (437)
T 3g0t_A 113 GSMQGCFVSFLVA--NRTHKNREYGTLFIDPGFNLNKLQCRILGQ-KFESFDLF-EYRGEKLREKLESYLQT--GQFCSI 186 (437)
T ss_dssp HHHHHHHHHHHHH--TTSCTTCSCCEEEEESCCHHHHHHHHHHTC-CCEEEEGG-GGCTTHHHHHHHHHHTT--TCCCEE
T ss_pred CHHHHHHHHHHHH--hcCCCCCccEEEEeCCCcHhHHHHHHHcCC-EEEEEeec-CCCCccCHHHHHHHHhc--CCceEE
Confidence 9999999998877 5 7999 999999999999999999999 99999985 44566899999999843 233444
Q ss_pred EcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 161 LHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 161 l~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.++||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 187 ~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D--e~~~~~~~~ 230 (437)
T 3g0t_A 187 IYSNPNNPTWQCMTDEELRIIGELATKHDVIVIED--LAYFGMDFR 230 (437)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCCTT
T ss_pred EEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEE--cchhhcccC
Confidence 44689999996 6889999999999999 999887664
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-23 Score=177.55 Aligned_cols=176 Identities=13% Similarity=0.044 Sum_probs=141.1
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.+ .+.+++.+++|..+..+. ...+|.+..|.++||+++++++.. ..+....+++| ++|.
T Consensus 28 ~g~~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~l~~~la~~~~~-~~g~~~~~~~v--~~~~ 97 (388)
T 1j32_A 28 EGIDVCSFSAGEP-----DFNTPKHIVEAAKAALEQ--GKTRYGPAAGEPRLREAIAQKLQR-DNGLCYGADNI--LVTN 97 (388)
T ss_dssp TTCCCEECCCSSC-----SSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHCCCCCGGGE--EEES
T ss_pred cCCCEEECCCCCC-----CCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-hcCCCCChhhE--EEcC
Confidence 4778999999952 345678899988777653 346799999999999999999853 32222445665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ +++||+|++++|+|++|...++..|+ +++.++....+.+.+|++.+++.++ +++.+++.++
T Consensus 98 g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~ 171 (388)
T 1j32_A 98 GGKQSIFNLMLAM--IEPGDEVIIPAPFWVSYPEMVKLAEG-TPVILPTTVETQFKVSPEQIRQAIT---PKTKLLVFNT 171 (388)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEESSCCTHHHHHHHHTTC-EEEEECCCGGGTTCCCHHHHHHHCC---TTEEEEEEES
T ss_pred CHHHHHHHHHHHh--cCCCCEEEEcCCCChhHHHHHHHcCC-EEEEecCCcccCCCCCHHHHHHhcC---cCceEEEEeC
Confidence 9999999999877 67999999999999999999999999 8988887432345689999998885 3445555578
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|+++++++|.| ++|.++.++
T Consensus 172 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 211 (388)
T 1j32_A 172 PSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD--EIYEKILYD 211 (388)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCT
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE--ccchhcccC
Confidence 9999997 6889999999999999 999987764
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-23 Score=182.40 Aligned_cols=177 Identities=11% Similarity=0.051 Sum_probs=141.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC-CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL-NHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQ 82 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~ 82 (218)
++..+|||+.|. +++++++.|++|..+.+.. .. .++|.+..|.++||+++++++.. ..+..+++ ++| ++
T Consensus 26 ~~~~~i~l~~g~-----~~~~~~~~v~~a~~~~~~~-~~~~~~y~~~~g~~~lr~~la~~~~~-~~g~~~~~~~~i--~~ 96 (422)
T 3fvs_A 26 SEHDVVNLGQGF-----PDFPPPDFAVEAFQHAVSG-DFMLNQYTKTFGYPPLTKILASFFGE-LLGQEIDPLRNV--LV 96 (422)
T ss_dssp HTSCCEECCCSS-----CSSCCCHHHHHHHHHHHHS-CGGGGSCCCTTCCHHHHHHHHHHHHH-HHTCCCCHHHHE--EE
T ss_pred hcCCceEeCCCC-----CCCCCCHHHHHHHHHHHhC-CCccCCCCCCCCCHHHHHHHHHHHHH-hhCCCCCCCCcE--EE
Confidence 356789999994 3456789999998887754 22 36899999999999999999854 33333445 455 58
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccC----------CcCccccHHHHHHHHhc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN----------PEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~----------~~~~~~d~~~~~~~l~~ 152 (218)
|.|+++|+.++++++ +.+||+|++++|+|++|...++..|+ +++.+++.. .+.+.+|++.+++.+.
T Consensus 97 ~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l~~~~~- 172 (422)
T 3fvs_A 97 TVGGYGALFTAFQAL--VDEGDEVIIIEPFFDCYEPMTMMAGG-RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT- 172 (422)
T ss_dssp ESHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECBCCCCCSSSCCBGGGSBCCHHHHHTTCC-
T ss_pred ECChHHHHHHHHHHH--cCCCCEEEEcCCCchhhHHHHHHcCC-EEEEEecccccccccccccccCCCCCHHHHHhhcC-
Confidence 999999999998877 67999999999999999999999999 899998753 1234578888887764
Q ss_pred CCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 153 APDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+++.+++.++||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 173 --~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 222 (422)
T 3fvs_A 173 --SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITD--EVYQWMVYD 222 (422)
T ss_dssp --TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCT
T ss_pred --CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEE--ccchhhccC
Confidence 34555556789999997 7889999999999999 999987765
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5e-23 Score=185.76 Aligned_cols=183 Identities=11% Similarity=0.067 Sum_probs=129.8
Q ss_pred ceeeeeeeEEeCCCCCc--------------------cCchHHHHHHHHHhhcCC--CCccCcCCCCcHHHHHHHHHHhc
Q psy6266 8 IHCCEIRNAYRTEECKP--------------------WVLPVVRQAEKELAADDS--LNHEYLPVLGLESFSSAATRMLL 65 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~--------------------~~~~~v~~a~~~~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~ 65 (218)
.+|++.+|.+...+.++ ..|..+.++..+++++.. ....|.++.|.++||+++++++.
T Consensus 64 ~~i~~nig~p~~~~~~~~~~~r~~l~l~~~p~~~~~~~~P~~~~~~~~~~l~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~ 143 (498)
T 3ihj_A 64 EVIRANIGDAQAMGQQPITFLRQVMALCTYPNLLDSPSFPEDAKKRARRILQACGGNSLGSYSASQGVNCIREDVAAYIT 143 (498)
T ss_dssp SCBCCC----------CCHHHHHHHHHHHCGGGGGCSSSCHHHHHHHHHHHHHC----------CCSCHHHHHHHHHHHH
T ss_pred hhhhcCCcCcccccCCcchHHHHHHHHhcCccccCcccCCHHHHHHHHHHHHhccCCCCCCCCCCCCHHHHHHHHHHHHH
Confidence 89999999753222111 013333444455444311 34689999999999999999996
Q ss_pred CCCC-CCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCC----eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCcc
Q psy6266 66 GGDA-SPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYT----TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRA 140 (218)
Q Consensus 66 ~~~~-~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd----~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~ 140 (218)
. .. +...++++| ++|.|+++++.++++++ +++|| +|+++.|+|+.|...++..|+ +++.+++...+.++
T Consensus 144 ~-~~gG~~~~~~~i--~~t~G~~~ai~~~~~~l--~~~gd~~~d~Vlv~~p~y~~~~~~~~~~g~-~~v~~~~~~~~~~~ 217 (498)
T 3ihj_A 144 R-RDGGVPADPDNI--YLTTGASDGISTILKIL--VSGGGKSRTGVMIPIPQYPLYSAVISELDA-IQVNYYLDEENCWA 217 (498)
T ss_dssp H-HTTTCCCCGGGE--EEESSHHHHHHHHHHHH--CCCCGGGSEEEEEEESCCTHHHHHHHHTTC-EEEEEECBGGGTTB
T ss_pred H-hcCCCCCCcccE--EEcCCHHHHHHHHHHHH--cCCCCCCCCEEEEeCCCchhHHHHHHHcCC-EEEEeeccccccCC
Confidence 4 43 233566775 59999999999999877 67775 999999999999999999999 99999986555678
Q ss_pred ccHHHHHHHHhcCCC--CcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 141 VDFTGMYEDLVNAPD--NSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 141 ~d~~~~~~~l~~~~~--~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+|++.+++.+++... ++.+++.++||||||. +|+++|++|+++||+| ++|..+.++
T Consensus 218 ~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~D--e~y~~~~~~ 283 (498)
T 3ihj_A 218 LNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD--EVYQDNVYS 283 (498)
T ss_dssp CCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCC
T ss_pred CCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEE--cCccccccC
Confidence 899999999975311 2444444589999996 6899999999999999 999998876
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=176.67 Aligned_cols=176 Identities=13% Similarity=0.062 Sum_probs=140.8
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.+ .++.++.+++|..+..+. ....|.+..|.++||+++++++.. ..+..+++++| ++|.
T Consensus 39 ~g~~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~lr~~la~~~~~-~~g~~~~~~~v--~~~~ 108 (389)
T 1o4s_A 39 KGEDVINLTAGEP-----DFPTPEPVVEEAVRFLQK--GEVKYTDPRGIYELREGIAKRIGE-RYKKDISPDQV--VVTN 108 (389)
T ss_dssp TTCCCEECCCSSC-----SSCCCHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHH-HHTCCCCGGGE--EEES
T ss_pred cCCCEEEccCCCC-----CCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCHHHE--EEec
Confidence 4778999999952 334578899988777743 345799989999999999999843 22222355665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ +.|||+|++++|+|++|...++..|+ +++.++....+.+.+|++.+++.+++ ++.+++.++
T Consensus 109 g~t~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~ 182 (389)
T 1o4s_A 109 GAKQALFNAFMAL--LDPGDEVIVFSPVWVSYIPQIILAGG-TVNVVETFMSKNFQPSLEEVEGLLVG---KTKAVLINS 182 (389)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECCGGGTTCCCHHHHHHTCCT---TEEEEEEES
T ss_pred CHHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCC-EEEEEecCCccCCCCCHHHHHHhccc---CceEEEEcC
Confidence 9999999999877 67999999999999999999999999 89999874223456799999887753 445555578
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|+++++++|.| ++|.++.++
T Consensus 183 p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--ea~~~~~~~ 222 (389)
T 1o4s_A 183 PNNPTGVVYRREFLEGLVRLAKKRNFYIISD--EVYDSLVYT 222 (389)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTSBCS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE--ccccccccC
Confidence 9999997 6889999999999999 999988764
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=174.95 Aligned_cols=171 Identities=12% Similarity=0.044 Sum_probs=139.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|..+|||+.|. ..+++++.|++|..+.... ..++|.+ .| ++||+++++++.. ..+....+++| ++|
T Consensus 20 ~~g~~~idl~~~~-----~~~~~~~~v~~a~~~~~~~--~~~~y~~-~~-~~lr~~la~~~~~-~~~~~~~~~~i--~~t 87 (377)
T 3fdb_A 20 RYGQGVLPLWVAE-----SDFSTCPAVLQAITDAVQR--EAFGYQP-DG-SLLSQATAEFYAD-RYGYQARPEWI--FPI 87 (377)
T ss_dssp SSCTTSEECCSSC-----CCSCCCHHHHHHHHHHHHT--TCCSSCC-SS-CCHHHHHHHHHHH-HHCCCCCGGGE--EEE
T ss_pred ccCCCeeeecccC-----CCCCCCHHHHHHHHHHHHc--CCCCCCC-CC-HHHHHHHHHHHHH-HhCCCCCHHHE--EEe
Confidence 3588999999994 3356789999998877753 4567999 88 9999999999864 33333455665 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ +.|||+|++++|+|++|...++..|+ +++.++.. .+ +|++.+++.+.+. +.+++.+
T Consensus 88 ~g~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~---~d~~~l~~~l~~~---~~~v~i~ 157 (377)
T 3fdb_A 88 PDVVRGLYIAIDHF--TPAQSKVIVPTPAYPPFFHLLSATQR-EGIFIDAT-GG---INLHDVEKGFQAG---ARSILLC 157 (377)
T ss_dssp SCHHHHHHHHHHHH--SCTTCCEEEEESCCTHHHHHHHHHTC-CEEEEECT-TS---CCHHHHHHHHHTT---CCEEEEE
T ss_pred CChHHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHHHHcCC-EEEEccCC-CC---CCHHHHHHHhccC---CCEEEEe
Confidence 99999999998877 67999999999999999999999999 99999874 22 8999999999742 3345556
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 158 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 198 (377)
T 3fdb_A 158 NPYNPLGMVFAPEWLNELCDLAHRYDARVLVD--EIHAPLVFD 198 (377)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEE--CTTGGGBSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE--cccchhhcC
Confidence 89999996 6788899999999999 999987765
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.8e-23 Score=179.40 Aligned_cols=177 Identities=14% Similarity=0.105 Sum_probs=132.8
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t 83 (218)
.|..+|||+.|.+ .+.+++.|++|..+.++. ...++|.+..|.++||+++++++.. ..+...++ ++| ++|
T Consensus 35 ~g~~~idl~~g~~-----~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~l~~~ia~~~~~-~~g~~~~~~~~v--~~t 105 (412)
T 2x5d_A 35 RGEDIIDLSMGNP-----DGPTPPHIVEKLCTVAQR-EDTHGYSTSRGIPRLRRAISHWYRD-RYDVQIDPESEA--IVT 105 (412)
T ss_dssp TTCCCEECSSCCC-----CSCCCHHHHHHHHHTC----------CTTCCHHHHHHHHHHHHH-HHCCCCCTTTSE--EEE
T ss_pred cCCCEEecCCCCC-----CCCCCHHHHHHHHHHHhC-CCCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCCCcCE--EEc
Confidence 5778999999952 234688899988876643 2256799999999999999999842 22222444 465 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ +.|||+|++++|+|+.|...++..|+ +++.++....+.+.+|++.+++.+.. +...++ .+
T Consensus 106 ~g~~~a~~~~~~~~--~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~i~~--~~~~v~-l~ 179 (412)
T 2x5d_A 106 IGSKEGLAHLMLAT--LDHGDTILVPNPSYPIHIYGAVIAGA-QVRSVPLVPGIDFFNELERAIRESIP--KPRMMI-LG 179 (412)
T ss_dssp SCHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHHHTC-EEEEEECSTTSCHHHHHHHHHHTEES--CCSEEE-EE
T ss_pred CChHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCC-EEEEeecCCccCCCCCHHHHHHhccc--CceEEE-EC
Confidence 99999999999877 67999999999999999999999999 89999874221334677888777752 223444 47
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 180 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 220 (412)
T 2x5d_A 180 FPSNPTAQCVELDFFERVVALAKQYDVMVVHD--LAYADIVYD 220 (412)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEe--ccccccccC
Confidence 89999996 6889999999999999 999988763
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=174.66 Aligned_cols=174 Identities=12% Similarity=0.097 Sum_probs=138.8
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCc-eEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGR-AFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~-v~~~~t~G 85 (218)
+.+|||+.|. +.+.+++.+++|..+.++. ...+|.+..|.++||+++++++.. ..+...++++ | ++|.|
T Consensus 26 ~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~l~~~la~~~~~-~~g~~~~~~~~v--~~~~g 95 (389)
T 1gd9_A 26 KDVISLGIGE-----PDFDTPQHIKEYAKEALDK--GLTHYGPNIGLLELREAIAEKLKK-QNGIEADPKTEI--MVLLG 95 (389)
T ss_dssp SSCEECCCCS-----CSSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHCCCCCTTTSE--EEESS
T ss_pred cCeEecCCCC-----CCCCCCHHHHHHHHHHHhC--CCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCCCCeE--EEcCC
Confidence 4689999995 2344688899988777754 345799999999999999999843 2222244566 5 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.++++++ +++||+|++++|+|++|...++..|+ +++.++....+.+.+|++.+++.+.+ ++.+++.++|
T Consensus 96 ~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~ 169 (389)
T 1gd9_A 96 ANQAFLMGLSAF--LKDGEEVLIPTPAFVSYAPAVILAGG-KPVEVPTYEEDEFRLNVDELKKYVTD---KTRALIINSP 169 (389)
T ss_dssp TTHHHHHHHTTT--CCTTCEEEEEESCCTTHHHHHHHHTC-EEEEEECCGGGTTCCCHHHHHHHCCT---TEEEEEEESS
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHCCC-EEEEeccCCccCCCCCHHHHHHhcCc---CceEEEEECC
Confidence 999999998876 67999999999999999999999999 89999874223456799999988853 3445555789
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|++|++++|.| ++|.++.++
T Consensus 170 ~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 208 (389)
T 1gd9_A 170 CNPTGAVLTKKDLEEIADFVVEHDLIVISD--EVYEHFIYD 208 (389)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCT
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--hhhhhcccC
Confidence 999996 6889999999999999 999988764
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-22 Score=181.13 Aligned_cols=177 Identities=10% Similarity=0.016 Sum_probs=140.3
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
+..+|||+.|.+ +....+++.+++|..+.+++.. ...+|.+..|.++||+++++++.. ..+.. ++++| ++|.
T Consensus 75 ~~~~i~l~~g~p---~~~~~p~~~v~~a~~~~l~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~-~~g~~-~~~~v--~~t~ 147 (448)
T 3aow_A 75 TSDIISLAGGLP---NPKTFPKEIIRDILVEIMEKYADKALQYGTTKGFTPLRETLMKWLGK-RYGIS-QDNDI--MITS 147 (448)
T ss_dssp TSSSEECCCCCC---CGGGSCHHHHHHHHHHHHHHSHHHHHSCCCTTCCHHHHHHHHHHHHH-HHCCC-TTSEE--EEES
T ss_pred CCCcEeCCCCCC---CchhCCHHHHHHHHHHHHHhhhHHHhCCCCCCCcHHHHHHHHHHHHH-hcCcC-ChhhE--EEeC
Confidence 346899999963 4444568889988777664310 135799999999999999999843 32222 45554 6999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHh----cCCCCcEE-
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLV----NAPDNSVI- 159 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~----~~~~~~~i- 159 (218)
|+++|+.++++++ ++|||+|++++|+|++|...++..|+ +++.++.. . .++|++.+++.++ +. +++.+
T Consensus 148 G~~~al~~~~~~l--~~~Gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~-~--~g~d~~~L~~~l~~~~~~~-~~~k~v 220 (448)
T 3aow_A 148 GSQQALDLIGRVF--LNPGDIVVVEAPTYLAALQAFNFYEP-QYIQIPLD-D--EGMKVEILEEKLKELKSQG-KKVKVV 220 (448)
T ss_dssp SHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTCC-EEEEEEEE-T--TEECHHHHHHHHHHHHHTT-CCEEEE
T ss_pred cHHHHHHHHHHHH--cCCCCEEEEeCCChHHHHHHHHHcCC-EEEEeccC-C--CCCCHHHHHHHHhhhhccC-CCCeEE
Confidence 9999999999887 68999999999999999999999999 89999873 3 2589999999886 32 23444
Q ss_pred EEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 160 ILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 160 il~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++.++||||||. +|.++|++|+++||+| ++|.++.++
T Consensus 221 ~~~~~~~NPtG~~~~~~~l~~i~~la~~~~~~lI~D--e~y~~~~~~ 265 (448)
T 3aow_A 221 YTVPTFQNPAGVTMNEDRRKYLLELASEYDFIVVED--DPYGELRYS 265 (448)
T ss_dssp EECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CSCTTCBCS
T ss_pred EECCCCCCCcCCCCCHHHHHHHHHHHHHcCCEEEEE--CCCccccCC
Confidence 467899999996 7899999999999999 999988764
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=172.18 Aligned_cols=173 Identities=13% Similarity=0.104 Sum_probs=138.2
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEecc
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLS 85 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G 85 (218)
..+|||+.|.+ ++.+++.|++|..+..+. ....|.+..|.++||+++++++.. ..+...+++ +| ++|.|
T Consensus 30 ~~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~l~~~la~~l~~-~~g~~~~~~~~v--~~~~g 99 (386)
T 1u08_A 30 HQAINLSQGFP-----DFDGPRYLQERLAHHVAQ--GANQYAPMTGVQALREAIAQKTER-LYGYQPDADSDI--TVTAG 99 (386)
T ss_dssp TTCEECCCSSC-----SSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHSCCCCTTTTE--EEESS
T ss_pred CCeEEecCCCC-----CCCCCHHHHHHHHHHHHh--hccCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCCE--EEcCC
Confidence 35789999953 234678999998877753 346799999999999999999832 212124456 65 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++|+.++++++ +++||+|++++|+|+.|...++..|+ +++.++.. .+.+.+|++.+++.+. +++.+++.++|
T Consensus 100 ~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~v~~~-~~~~~~d~~~l~~~l~---~~~~~v~l~~p 172 (386)
T 1u08_A 100 ATEALYAAITAL--VRNGDEVICFDPSYDSYAPAIALSGG-IVKRMALQ-PPHFRVDWQEFAALLS---ERTRLVILNTP 172 (386)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECC-TTTCCCCHHHHHHHCC---TTEEEEEEESS
T ss_pred hHHHHHHHHHHh--CCCCCEEEEeCCCchhHHHHHHHcCC-EEEEeecC-cccCcCCHHHHHHhhc---ccCEEEEEeCC
Confidence 999999999877 67999999999999999999999999 89999873 3246789999998884 34455555689
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|++|++++|.| ++|.++.++
T Consensus 173 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 211 (386)
T 1u08_A 173 HNPSATVWQQADFAALWQAIAGHEIFVISD--EVYEHINFS 211 (386)
T ss_dssp CTTTCCCCCHHHHHHHHHHHTTSCCEEEEE--CTTTTCBCC
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCcEEEEE--ccccccccC
Confidence 999997 6889999999999999 999987664
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-22 Score=175.19 Aligned_cols=179 Identities=9% Similarity=0.067 Sum_probs=141.7
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhc-------CCCCCCCcCCCce
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLL-------GGDASPPLREGRA 78 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~-------~~~~~~~~~~~~v 78 (218)
+..+|+|+.|.+.. .++.++++.|++|..+.++. ...++|.+..|.++||+++++++. . .+ ....+++|
T Consensus 32 ~~~~i~l~~g~p~~-~~~~~~~~~v~~a~~~~~~~-~~~~~y~~~~~~~~lr~~la~~~~~~~~~~~~-~~-~~~~~~~v 107 (416)
T 1bw0_A 32 PKPIIKLSVGDPTL-DKNLLTSAAQIKKLKEAIDS-QECNGYFPTVGSPEAREAVATWWRNSFVHKEE-LK-STIVKDNV 107 (416)
T ss_dssp CSCCEECCCCCTTT-TSCSCCCHHHHHHHHHHHHT-TCSSSCCCTTCCHHHHHHHHHHHHHHHCCSTT-TG-GGCCGGGE
T ss_pred CCCeEEecCcCCCc-ccCCCCCHHHHHHHHHHhhC-CccCCcCCCCCCHHHHHHHHHHHHhhhccccc-CC-CCCCcceE
Confidence 45789999996311 23467889999998877654 234679998999999999999986 3 22 12445665
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcE
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSV 158 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 158 (218)
++|.|+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.++....+.+.+|++.+++.+.. ++.
T Consensus 108 --~~~~g~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~ 179 (416)
T 1bw0_A 108 --VLCSGGSHGILMAITAI--CDAGDYALVPQPGFPHYETVCKAYGI-GMHFYNCRPENDWEADLDEIRRLKDD---KTK 179 (416)
T ss_dssp --EEESHHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTC-EEEEEEEEGGGTTEECHHHHHHHCCT---TEE
T ss_pred --EEeCChHHHHHHHHHHh--CCCCCEEEEcCCCcHhHHHHHHHcCc-EEEEeecCcccCCCCCHHHHHHHhcc---CCe
Confidence 59999999999998877 67999999999999999999999999 89998874332456899999888853 344
Q ss_pred EEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 159 IILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 159 iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+++.++||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 180 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 225 (416)
T 1bw0_A 180 LLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSD--EIYAGMVFK 225 (416)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEE--CTTTTCBCC
T ss_pred EEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEE--ccccccccC
Confidence 5555679999996 7889999999999999 999987654
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.4e-23 Score=177.22 Aligned_cols=175 Identities=14% Similarity=0.028 Sum_probs=137.2
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t 83 (218)
.|..+|||+.|.+ .+.+++.|++|..+.++. ...++|.+..|.++||+++++++.. ..+...+++ +| ++|
T Consensus 23 ~g~~~idl~~~~~-----~~~~~~~v~~a~~~~~~~-~~~~~y~~~~~~~~l~~~ia~~~~~-~~g~~~~~~~~v--~~~ 93 (376)
T 2dou_A 23 RGVGLIDLSIGST-----DLPPPEAPLKALAEALND-PTTYGYCLKSCTLPFLEEAARWYEG-RYGVGLDPRREA--LAL 93 (376)
T ss_dssp TTCCCEECSSCCC-----CCCCCHHHHHHHHHHTTC-GGGSSCCCHHHHHHHHHHHHHHHHH-HHSCCCCTTTSE--EEE
T ss_pred cCCCEEeccCCCC-----CCCCCHHHHHHHHHHHhC-CCcCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCCccE--EEc
Confidence 5788999999963 234578899998877643 2246788878999999999999842 212223444 65 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ ++|||+|++++|+|+.|...++..|+ +++.+|. .+.+.+|++.+++.+.. ++.+++.+
T Consensus 94 ~g~~~a~~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~~~~--~~~~~~d~~~l~~~l~~---~~~~v~l~ 165 (376)
T 2dou_A 94 IGSQEGLAHLLLAL--TEPEDLLLLPEVAYPSYFGAARVASL-RTFLIPL--REDGLADLKAVPEGVWR---EAKVLLLN 165 (376)
T ss_dssp SSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHHHHHTTC-EEEEECB--CTTSSBCGGGSCHHHHH---HEEEEEEC
T ss_pred CCcHHHHHHHHHHh--cCCCCEEEECCCCcHhHHHHHHHcCC-EEEEeeC--CCCCCCCHHHHHHhhcc---CceEEEEC
Confidence 99999999998877 67899999999999999999999999 8998887 34455788888887752 33444445
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 166 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 206 (376)
T 2dou_A 166 YPNNPTGAVADWGYFEEALGLARKHGLWLIHD--NPYVDQVYE 206 (376)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTGGGBSS
T ss_pred CCCCCcCccCCHHHHHHHHHHHHHcCCEEEEE--ccchhcccC
Confidence 89999996 6889999999999999 999987654
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=177.69 Aligned_cols=170 Identities=11% Similarity=0.035 Sum_probs=129.9
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC---CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD---SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
.|..+|||+.|. .++++++.|++|..+.+++. ...++|.+..|.++||+++++++.. +....+++| +
T Consensus 67 ~~~~~i~l~~g~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~---g~~~~~~~i--~ 136 (449)
T 3qgu_A 67 PDAKIISLGIGD-----TTEPLPKYIADAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYG---HAGRAADEI--F 136 (449)
T ss_dssp TTCCCEECSSCC-----CCCCCCHHHHHHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHT---TTTCCGGGE--E
T ss_pred CCCCEEEeeCCC-----CCCCCCHHHHHHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHc---CCCCCHHHE--E
Confidence 377899999993 34567889998877766520 2456899999999999999999841 111455665 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCc----------ceeEeccCCcCccccHHHHHHHHh
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTE----------AREYRYWNPEKRAVDFTGMYEDLV 151 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~----------~~~~~~~~~~~~~~d~~~~~~~l~ 151 (218)
+|.|+++++.++ ..+ ++|||+|++++|+|++|...++..|+ + ++.+++...+.+..+++
T Consensus 137 ~t~G~~~al~~~-~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~------- 205 (449)
T 3qgu_A 137 ISDGSKCDIARI-QMM--FGSKPTVAVQDPSYPVYVDTSVMMGM-TGDHNGTGFDGIEYMVCNPDNHFFPDLS------- 205 (449)
T ss_dssp EESCHHHHHHHH-HHH--HCSSSCEEEEESCCTHHHHHHHHHTC-SCCBCSSSBTTEEEEECCGGGTTCCCGG-------
T ss_pred EccCHHHHHHHH-HHH--hCCCCEEEEcCCCChhHHHHHHHcCC-cccccccccceeEEEecccccCCcCChh-------
Confidence 999999999988 655 57999999999999999999999998 7 88888743323333432
Q ss_pred cCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.++...+++ ++||||||. +|+++|++|++++|.| ++|.++.++
T Consensus 206 ~~~~~~~v~l-~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~D--ea~~~~~~~ 257 (449)
T 3qgu_A 206 KAKRTDIIFF-CSPNNPTGAAATRAQLTELVNFARKNGSILVYD--AAYALYISN 257 (449)
T ss_dssp GCCCCSEEEE-ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTGGGCCC
T ss_pred HcCCCCEEEE-eCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEE--cchHhhhcC
Confidence 2123344444 589999996 6888899999999999 999998776
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.5e-22 Score=172.00 Aligned_cols=178 Identities=14% Similarity=0.095 Sum_probs=141.7
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
|...|.++|||++|. ..+++++.|++|..+.+.+ ..+.|.+. ..++|+++++++.. ..+....+++| +
T Consensus 22 ~d~~g~~~i~~~~~~-----~~~~~~~~v~~a~~~~~~~--~~~~y~~~--~~~l~~~la~~l~~-~~g~~~~~~~i--~ 89 (391)
T 3dzz_A 22 WGVLKEKELPMWIAE-----MDFKIAPEIMASMEEKLKV--AAFGYESV--PAEYYKAVADWEEI-EHRARPKEDWC--V 89 (391)
T ss_dssp TTTCCTTCEECCSSC-----CSSCCCHHHHHHHHHHHTT--CCCCCBCC--CHHHHHHHHHHHHH-HHSCCCCGGGE--E
T ss_pred eeccCCCceeccccC-----CCCCCCHHHHHHHHHHHhc--CcCCCCCC--CHHHHHHHHHHHHH-HhCCCCCHHHE--E
Confidence 345678999999994 3457789999998887753 45678776 69999999999854 33323455665 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEecc-CCcCccccHHHHHHHHhcCCCCcEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW-NPEKRAVDFTGMYEDLVNAPDNSVII 160 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~~~~~l~~~~~~~~ii 160 (218)
+|.|+++|+.++++++ +.+||+|++++|+|+++...++..|+ +++.++.. ....+.+|++.+++.+++ +++.++
T Consensus 90 ~~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~d~~~l~~~l~~--~~~~~v 164 (391)
T 3dzz_A 90 FASGVVPAISAMVRQF--TSPGDQILVQEPVYNMFYSVIEGNGR-RVISSDLIYENSKYSVNWADLEEKLAT--PSVRMM 164 (391)
T ss_dssp EESCHHHHHHHHHHHH--SCTTCEEEECSSCCHHHHHHHHHTTC-EEEECCCEEETTEEECCHHHHHHHHTS--TTEEEE
T ss_pred ECCCHHHHHHHHHHHh--CCCCCeEEECCCCcHHHHHHHHHcCC-EEEEeeeeecCCceeecHHHHHHHHhc--cCceEE
Confidence 9999999999999887 67999999999999999999999999 89988873 233345899999999963 344555
Q ss_pred EcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 161 LHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 161 l~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.++||||||. +|.++|++|++++|.| ++|.++.+.
T Consensus 165 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 208 (391)
T 3dzz_A 165 VFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISD--EIHGDLVLT 208 (391)
T ss_dssp EEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCS
T ss_pred EEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEe--cccccccCC
Confidence 55789999996 6889999999999999 999877654
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=175.30 Aligned_cols=179 Identities=13% Similarity=0.027 Sum_probs=141.2
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.+.. ..+++++.+++|..+.++. ....|.+..|.++||+++++++.. ..+...++++| ++|.
T Consensus 36 ~g~~~i~l~~~~~~~--~~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~l~~~la~~l~~-~~g~~~~~~~v--~~t~ 108 (406)
T 1xi9_A 36 KGIKVIRLNIGDPVK--FDFQPPEHMKEAYCKAIKE--GHNYYGDSEGLPELRKAIVEREKR-KNGVDITPDDV--RVTA 108 (406)
T ss_dssp TTCCCEECCCCCGGG--TTCCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHCCCCCGGGE--EEES
T ss_pred cCCCEEEecCCCCCc--CCCCCCHHHHHHHHHHHhc--CCCCCCCCCCcHHHHHHHHHHHHH-hcCCCCCHHHE--EEcC
Confidence 477899999995310 0235678899888776653 345799999999999999999843 32222455665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ +.|||+|++++|+|++|...++..|+ +++.++....+.+.+|++.+++.+++ ++.+++.++
T Consensus 109 g~~~al~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~i~~ 182 (406)
T 1xi9_A 109 AVTEALQLIFGAL--LDPGDEILVPGPSYPPYTGLVKFYGG-KPVEYRTIEEEDWQPDIDDIRKKITD---RTKAIAVIN 182 (406)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHHTTC-EEEEEEEEGGGTSEECHHHHHHHCCT---TEEEEEEES
T ss_pred ChHHHHHHHHHHh--CCCCCEEEEcCCCCccHHHHHHHcCC-EEEEeecCCCcCCcCCHHHHHHhhCc---CceEEEEEC
Confidence 9999999999877 67999999999999999999999999 89999874323456799999988853 344455568
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|+++++++|.| ++|.++.++
T Consensus 183 p~nptG~~~~~~~l~~i~~~a~~~~~~li~D--e~~~~~~~~ 222 (406)
T 1xi9_A 183 PNNPTGALYDKKTLEEILNIAGEYEIPVISD--EIYDLMTYE 222 (406)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCCEEEE--CTTTTCBSS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEE--cCccccccC
Confidence 9999995 7889999999999999 999988763
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-22 Score=174.65 Aligned_cols=175 Identities=13% Similarity=0.057 Sum_probs=138.8
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEeccC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQTLSG 86 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t~G~ 86 (218)
.+|||+.|.| ++ +++++.|++|..+.++. .....|.+..|.++||+++++++.. ..+...++ ++| ++|.|+
T Consensus 40 ~~id~~~g~~---~~-~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~l~~~l~~~l~~-~~g~~~~~~~~i--~~~~g~ 111 (407)
T 3nra_A 40 RPVDFSHGDV---DA-HEPTPGAFDLFSAGVQS-GGVQAYTEYRGDLGIRDLLAPRLAA-FTGAPVDARDGL--IITPGT 111 (407)
T ss_dssp CCEETTSCCT---TT-SCCCTTHHHHHHHHHHH-THHHHSCCTTCCHHHHHHHHHHHHH-HHTSCCCTTTSE--EEESHH
T ss_pred ceeeecCcCC---CC-CCCcHHHHHHHHHHHhc-CCCCCcCCCCCCHHHHHHHHHHHHH-HhCCCCCCCCcE--EEeCCc
Confidence 4899999963 32 56788999988877654 2345799999999999999998843 22222333 455 589999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEecc----CCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW----NPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~----~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
++|+.++++++ +.+||+|++++|+|++|...++..|+ +++.++.. ..+.+.+|++.+++.+.+ ++.+++.
T Consensus 112 ~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~---~~~~v~~ 185 (407)
T 3nra_A 112 QGALFLAVAAT--VARGDKVAIVQPDYFANRKLVEFFEG-EMVPVQLDYVSADETRAGLDLTGLEEAFKA---GARVFLF 185 (407)
T ss_dssp HHHHHHHHHTT--CCTTCEEEEEESCCTHHHHHHHHTTC-EEEEEEBCCCSSCCSSCCBCHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHHHHHHh--CCCCCEEEEcCCcccchHHHHHHcCC-EEEEeecccccccCcCCCcCHHHHHHHHhh---CCcEEEE
Confidence 99999998876 67999999999999999999999999 89999872 124567899999999975 2334444
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 186 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--ea~~~~~~~ 227 (407)
T 3nra_A 186 SNPNNPAGVVYSAEEIGQIAALAARYGATVIAD--QLYSRLRYA 227 (407)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTSBCT
T ss_pred cCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEE--ccccccccC
Confidence 679999996 7889999999999999 999987665
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=176.54 Aligned_cols=176 Identities=10% Similarity=0.040 Sum_probs=137.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t 83 (218)
.|..+|||+.|.+ .+.+++.|++|..+.++. ...++|.+..|.++||+++++++.. ..+...++ ++| ++|
T Consensus 45 ~g~~~idl~~g~~-----~~~~~~~v~~a~~~~~~~-~~~~~y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~~v--~~t 115 (404)
T 2o1b_A 45 GPLPLINMAVGIP-----DGPTPQGIIDHFQKALTI-PENQKYGAFHGKEAFKQAIVDFYQR-QYNVTLDKEDEV--CIL 115 (404)
T ss_dssp CSSCCEECCCCSC-----SSCCCHHHHHHHHHHTTC-HHHHSCCCTTCCHHHHHHHHHHHHH-HHCCCCCTTTSE--EEE
T ss_pred CCCCEEecCCcCC-----CCCCCHHHHHHHHHHHhC-CCCCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCCcccE--EEc
Confidence 4677899999963 234678899988877643 1235799889999999999999832 22222343 555 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ ++|||+|++++|+|++|...++..|+ +++.++.. .+.+.+|++.+++.+.. ++.+++.+
T Consensus 116 ~G~~~al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~v~~~-~~~~~~d~~~l~~~l~~---~~~~v~l~ 188 (404)
T 2o1b_A 116 YGTKNGLVAVPTCV--INPGDYVLLPDPGYTDYLAGVLLADG-KPVPLNLE-PPHYLPDWSKVDSQIID---KTKLIYLT 188 (404)
T ss_dssp SSHHHHHHHHHHHH--CCTTCEEEEEESCCSSHHHHHHHTTC-EEEEEECC-TTTCCCCGGGSCHHHHH---HEEEEEEC
T ss_pred CCcHHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHHHHCCC-EEEEeccC-cccCcCCHHHHHHhhcc---CceEEEEc
Confidence 99999999999877 67999999999999999999999999 89999874 23455788888887752 33444446
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|+++++++|.| ++|.++.++
T Consensus 189 ~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 229 (404)
T 2o1b_A 189 YPNNPTGSTATKEVFDEAIAKFKGTDTKIVHD--FAYGAFGFD 229 (404)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEE--CTTTTCBSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCEEEEE--ccchhcccC
Confidence 89999996 6889999999999999 999988764
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.6e-22 Score=174.33 Aligned_cols=173 Identities=14% Similarity=0.068 Sum_probs=133.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..| .+|||+.|. ..+++++.|++|+.+... ..++|.+..|.++||+++++++.. ..+..+.+++| ++|
T Consensus 21 ~~g-~~i~l~~~~-----~~~~~~~~v~~a~~~~~~---~~~~y~~~~g~~~lr~~la~~l~~-~~g~~~~~~~i--~~t 88 (376)
T 3ezs_A 21 PKK-RGLDLGIGE-----PQFETPKFIQDALKNHTH---SLNIYPKSAFEESLRAAQRGFFKR-RFKIELKENEL--IST 88 (376)
T ss_dssp CSS-CCCBCSSCC-----CCSCCCHHHHHHHHTTGG---GGGSCCCTTCCHHHHHHHHHHHHH-HHSCCCCGGGE--EEE
T ss_pred ccC-CEEEeCCCC-----CCCCCCHHHHHHHHHhhh---hcCCCCCCCCCHHHHHHHHHHHHH-HhCCCCCHHHE--EEC
Confidence 357 899999995 234568899998877653 356799999999999999999843 32222456665 599
Q ss_pred ccChhHHHHHHHHHHHhcC--CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 84 LSGTGALRVGAEFLHRILN--YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~--gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
.|+++++.++++++ +.+ ||+|++++|+|++|...++..|+ +++.++.... .+++. .+++.+.. +...+++
T Consensus 89 ~g~~~al~~~~~~~--~~~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~--~~~~~-~l~~~~~~--~~~~v~~ 160 (376)
T 3ezs_A 89 LGSREVLFNFPSFV--LFDYQNPTIAYPNPFYQIYEGAAKFIKA-KSLLMPLTKE--NDFTP-SLNEKELQ--EVDLVIL 160 (376)
T ss_dssp SSSHHHHHHHHHHH--TTTCSSCEEEEEESCCTHHHHHHHHTTC-EEEEEECCGG--GTSCC-CCCHHHHH--HCSEEEE
T ss_pred cCcHHHHHHHHHHH--cCCCCCCEEEEecCCcHhHHHHHHHcCC-EEEEcccCCC--CCcch-hHHhhhcc--CCCEEEE
Confidence 99999999998877 679 99999999999999999999999 8999987432 23443 44444542 2234444
Q ss_pred cccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 162 HACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 162 ~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|.++|++|++++|.| ++|.++.++.
T Consensus 161 -~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~~ 203 (376)
T 3ezs_A 161 -NSPNNPTGRTLSLEELISWVKLALKHDFILIND--ECYSEIYENT 203 (376)
T ss_dssp -CSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBSSS
T ss_pred -cCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEE--ccchhhccCC
Confidence 689999996 6888899999999999 9999987753
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-22 Score=170.06 Aligned_cols=172 Identities=10% Similarity=0.072 Sum_probs=138.0
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|.++|||+.|. ..+++++.|++|..+.+.+ ..+.|.+ |..++|+++++++.. ..+....+++| ++|.|
T Consensus 31 ~~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~~--~~~~y~~--~~~~~~~~l~~~l~~-~~g~~~~~~~v--~~~~g 98 (391)
T 4dq6_A 31 TNDLLPMWVAD-----MDFKAAPCIIDSLKNRLEQ--EIYGYTT--RPDSYNESIVNWLYR-RHNWKIKSEWL--IYSPG 98 (391)
T ss_dssp CSCSEECCSSS-----CSSCCCHHHHHHHHHHHTT--CCCCCBC--CCHHHHHHHHHHHHH-HHCCCCCGGGE--EEESC
T ss_pred CCCceeccccC-----CCCCCCHHHHHHHHHHHhC--CCCCCCC--CCHHHHHHHHHHHHH-HhCCCCcHHHe--EEcCC
Confidence 46789999993 3456789999998887753 3556765 679999999999854 33322455665 58999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEecc--CCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW--NPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~--~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
+++|+.++++++ +.+||+|++++|+|++|...++..|+ +++.++.. ....+.+|++.+++.+++ +.+++.+
T Consensus 99 ~~~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~v~i~ 171 (391)
T 4dq6_A 99 VIPAISLLINEL--TKANDKIMIQEPVYSPFNSVVKNNNR-ELIISPLQKLENGNYIMDYEDIENKIKD----VKLFILC 171 (391)
T ss_dssp HHHHHHHHHHHH--SCTTCEEEECSSCCTHHHHHHHHTTC-EEEECCCEECTTSCEECCHHHHHHHCTT----EEEEEEE
T ss_pred hHHHHHHHHHHh--CCCCCEEEEcCCCCHHHHHHHHHcCC-eEEeeeeeecCCCceEeeHHHHHHHhhc----CCEEEEE
Confidence 999999998877 67999999999999999999999999 89998874 233455799999998863 4555667
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 172 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 212 (391)
T 4dq6_A 172 NPHNPVGRVWTKDELKKLGDICLKHNVKIISD--EIHSDIILK 212 (391)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCCEEEee--ccccccccC
Confidence 89999996 6888999999999999 999987665
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-22 Score=178.39 Aligned_cols=171 Identities=13% Similarity=0.056 Sum_probs=132.0
Q ss_pred CCceeeeeeeEEeCCCC-CccCchHHHHHHH--HHhhcCCCCccC-cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 6 GEIHCCEIRNAYRTEEC-KPWVLPVVRQAEK--ELAADDSLNHEY-LPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~-~~~~~~~v~~a~~--~~~~~~~~~~~Y-~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
+..+|||+.|.+ +. .+++++.+++|.. ++.+.....++| .+..|.++||+++++++ + .++++| +
T Consensus 24 ~~~~i~l~~g~p---~~~~~~~~~~v~~a~~~~~~~~~~~~~~~Yp~~~~g~~~lr~~ia~~~-~------~~~~~i--~ 91 (423)
T 3ez1_A 24 RGLNLNMQRGQP---ADADFDLSNGLLTVLGAEDVRMDGLDLRNYPGGVAGLPSARALFAGYL-D------VKAENV--L 91 (423)
T ss_dssp HTCCEESCCCCC---CHHHHHTTGGGGGSCCGGGCEETTEETTSSCSCTTCCHHHHHHHHHHT-T------SCGGGE--E
T ss_pred CCceEecCCCCC---ChHhCCCcHHHHHHHhhhHHhhcchhhhCCCCCCCChHHHHHHHHHHh-C------CChhhE--E
Confidence 346799999963 21 1456777887764 444321124689 99999999999999987 3 345565 5
Q ss_pred EeccChhHHH--HHHHHHHHhc--C---------CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHH
Q psy6266 82 QTLSGTGALR--VGAEFLHRIL--N---------YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYE 148 (218)
Q Consensus 82 ~t~G~~~al~--~~~~~l~~l~--~---------gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~ 148 (218)
+|.|+++++. ++++++ ++ | ||+|++++|+|+.|...++..|+ +++.+++. .+ ++|++.+++
T Consensus 92 ~t~G~~~al~~~~~~~~l--~~~~~g~~~~~~~~gd~Vlv~~p~y~~~~~~~~~~g~-~~~~v~~~-~~--g~d~~~l~~ 165 (423)
T 3ez1_A 92 VWNNSSLELQGLVLTFAL--LHGVRGSTGPWLSQTPKMIVTVPGYDRHFLLLQTLGF-ELLTVDMQ-SD--GPDVDAVER 165 (423)
T ss_dssp ECSSCHHHHHHHHHHHHH--HTCCTTCSSCGGGGCCEEEEEESCCHHHHHHHHHHTC-EEEEEEEE-TT--EECHHHHHH
T ss_pred EeCCcHHHHHHHHHHHHH--hccCCCccccccCCCCEEEEcCCCcHHHHHHHHHcCC-EEEeccCC-CC--CCCHHHHHH
Confidence 9999999997 777766 56 7 59999999999999999999999 99999884 32 589999999
Q ss_pred HHhcCCCCcE-EEEcccCCCCcHH--------HHHHHh-hcCeEEEeeCCceeeccCCC
Q psy6266 149 DLVNAPDNSV-IILHACAHNPTAQ--------QVAHMV-DKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 149 ~l~~~~~~~~-iil~~~p~NPTG~--------~l~~l~-~~~~i~ii~D~r~~y~~l~~ 197 (218)
++++. +++. +++.++||||||. +|.++| ++|++++|.| ++|..+.+
T Consensus 166 ~l~~~-~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~D--e~y~~~~~ 221 (423)
T 3ez1_A 166 LAGTD-PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFAD--DAYRVHHL 221 (423)
T ss_dssp HHHSC-TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEE--CTTSSCBC
T ss_pred HHhhC-CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEE--CCcchhhc
Confidence 99632 3344 4456799999996 688888 8999999999 99985433
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.5e-22 Score=178.09 Aligned_cols=177 Identities=17% Similarity=0.206 Sum_probs=135.1
Q ss_pred CceeeeeeeEEeCCCCCccCchHH--HHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCc---eEEE
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVV--RQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGR---AFGV 81 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v--~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~---v~~~ 81 (218)
..+|||+.|.+. +.+ .++.+ .++..+.+.. ....+|.+..|.++||+++++++.. .+ ....+++ | +
T Consensus 47 ~~~i~l~~g~~~-~~~---~~~~~~~~~a~~~~~~~-~~~~~y~~~~g~~~lr~~ia~~~~~-~~-~~~~~~~~~~i--~ 117 (430)
T 2x5f_A 47 STTYNATIGMAT-NKD---GKMFASSLDAMFNDLTP-DEIFPYAPPQGIEELRDLWQQKMLR-DN-PELSIDNMSRP--I 117 (430)
T ss_dssp TCSEECCCSSCE-ETT---EECCCHHHHTTBSSCCG-GGTSSCCCTTCCHHHHHHHHHHHHH-HC-TTCCGGGBCCC--E
T ss_pred CCcEEeeeeecc-CCC---CchhhHHHHHHHHhcCc-ccccccCCCCCCHHHHHHHHHHHhc-cC-cccCCCccceE--E
Confidence 357899999642 122 24444 4443332211 1346799999999999999999954 43 2244566 5 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH-hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN-AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVII 160 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~-~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ii 160 (218)
+|.|+++|+.++++++ ++|||+|++++|+|+.|...++. .|+ +++.++....+ +.+|++.+++.+.+...++.++
T Consensus 118 ~t~g~~~al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~~g~-~~~~~~~~~~~-~~~d~~~l~~~l~~~~~~~~~v 193 (430)
T 2x5f_A 118 VTNALTHGLSLVGDLF--VNQDDTILLPEHNWGNYKLVFNTRNGA-NLQTYPIFDKD-GHYTTDSLVEALQSYNKDKVIM 193 (430)
T ss_dssp EESHHHHHHHHHHHHH--CCTTCEEEEESSCCTHHHHHHTTTTCC-EEEEECCBCTT-SCBCSHHHHHHHHHCCSSEEEE
T ss_pred EcCCchHHHHHHHHHH--hCCCCEEEEcCCcCccHHHHHHHhcCC-eEEEEeccCcc-CCcCHHHHHHHHHhcCCCCEEE
Confidence 9999999999999877 68999999999999999999999 999 89988874323 6789999999987532345555
Q ss_pred EcccCCCCcHH--------HHHHHhhc-----CeEEEeeCCceeeccCCCC
Q psy6266 161 LHACAHNPTAQ--------QVAHMVDK-----HHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 161 l~~~p~NPTG~--------~l~~l~~~-----~~i~ii~D~r~~y~~l~~~ 198 (218)
+.++||||||. +|.++|++ |++++|.| ++|.++.++
T Consensus 194 ~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~D--e~~~~~~~~ 242 (430)
T 2x5f_A 194 ILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVD--DAYYGLFYE 242 (430)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEE--CTTTTCBCS
T ss_pred EEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEe--hhcccccCC
Confidence 56789999996 68899999 99999999 999988765
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.6e-21 Score=168.15 Aligned_cols=168 Identities=10% Similarity=0.052 Sum_probs=136.0
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.+ .+.+++.+++|..+.++. ...+|.+..|.++||+++++++.. ..+...++++| ++|.
T Consensus 27 ~g~~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~--~~~~y~~~~~~~~l~~~la~~~~~-~~g~~~~~~~v--~~~~ 96 (370)
T 2z61_A 27 EGKKVIHLEIGEP-----DFNTPKPIVDEGIKSLKE--GKTHYTDSRGILELREKISELYKD-KYKADIIPDNI--IITG 96 (370)
T ss_dssp TTCCCEECCCCSC-----SSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HSSCCCCGGGE--EEES
T ss_pred cCCCEEEccCCCC-----CCCCCHHHHHHHHHHHHc--CccCCCCCCCCHHHHHHHHHHHHH-HhCCCCChhhE--EECC
Confidence 3778999999963 234578899988777653 356799999999999999999853 33333556665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.++ +|++.+++.+.+ ++.+++.++
T Consensus 97 g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~v~--------~d~~~l~~~l~~---~~~~v~~~~ 162 (370)
T 2z61_A 97 GSSLGLFFALSSI--IDDGDEVLIQNPCYPCYKNFIRFLGA-KPVFCD--------FTVESLEEALSD---KTKAIIINS 162 (370)
T ss_dssp SHHHHHHHHHHHH--CCTTCEEEEESSCCTHHHHHHHHTTC-EEEEEC--------SSHHHHHHHCCS---SEEEEEEES
T ss_pred ChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHHcCC-EEEEeC--------CCHHHHHHhccc---CceEEEEcC
Confidence 9999999999877 67999999999999999999999999 888775 578888887753 344455578
Q ss_pred CCCCcHH----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 163 p~nptG~~~~~~l~~~~~~~~~~li~D--e~~~~~~~~ 198 (370)
T 2z61_A 163 PSNPLGEVIDREIYEFAYENIPYIISD--EIYNGLVYE 198 (370)
T ss_dssp SCTTTCCCCCHHHHHHHHHHCSEEEEE--CTTTTCBSS
T ss_pred CCCCcCcccCHHHHHHHHHcCCEEEEE--cchhhcccC
Confidence 9999997 5899999999999999 999987764
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.3e-21 Score=171.25 Aligned_cols=173 Identities=14% Similarity=0.061 Sum_probs=137.4
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEeccC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLSG 86 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G~ 86 (218)
.+|||+.|.+ .+.+++.+++|..+.+++ ....|.+..|.++||+++++++.. ..+....++ +| ++|.|+
T Consensus 26 ~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~--~~~~y~~~~g~~~l~~~la~~~~~-~~g~~~~~~~~v--~~t~g~ 95 (411)
T 2o0r_A 26 GAVNLGQGFP-----DEDGPPKMLQAAQDAIAG--GVNQYPPGPGSAPLRRAIAAQRRR-HFGVDYDPETEV--LVTVGA 95 (411)
T ss_dssp TCEESSCSSC-----SSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHCCCCCTTTSE--EEEEHH
T ss_pred CeeeccCcCC-----CCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-HcCCCCCCCceE--EEeCCH
Confidence 4789999952 234678899998877753 356799999999999999999842 222224455 65 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC-cCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP-EKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++|+.++++++ ++|||+|++++|+|++|...++..|+ +++.++.... +.+.+|++.+++.+. +++.+++.++|
T Consensus 96 ~~al~~~~~~~--~~~gd~Vl~~~~~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~~ 169 (411)
T 2o0r_A 96 TEAIAAAVLGL--VEPGSEVLLIEPFYDSYSPVVAMAGA-HRVTVPLVPDGRGFALDADALRRAVT---PRTRALIINSP 169 (411)
T ss_dssp HHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECEEETTEEECCHHHHHHHCC---TTEEEEEEESS
T ss_pred HHHHHHHHHHh--cCCCCEEEEeCCCcHhHHHHHHHcCC-EEEEeeccccccCCCCCHHHHHHhhc---cCceEEEEeCC
Confidence 99999998877 67999999999999999999999999 8999887422 134579999998885 34455555789
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|+++++++|.| ++|.++.++
T Consensus 170 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 208 (411)
T 2o0r_A 170 HNPTGAVLSATELAAIAEIAVAANLVVITD--EVYEHLVFD 208 (411)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCEEEEE--ccccccccC
Confidence 999996 6889999999999999 999987653
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-22 Score=178.10 Aligned_cols=170 Identities=13% Similarity=0.082 Sum_probs=130.9
Q ss_pred CceeeeeeeEEeCCCCCc-cCchHHHHHH--HHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 7 EIHCCEIRNAYRTEECKP-WVLPVVRQAE--KELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~-~~~~~v~~a~--~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..+|||+.|.+ +... +.++.++++. .+++++ ....++|.+..|.++||+++++++ + .++++| ++
T Consensus 33 ~~~i~~~~G~p---~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~ia~~~-~------~~~~~i--~~ 100 (427)
T 3ppl_A 33 NLKLDLTRGKP---SSEQLDFADELLALPGKGDFKAADGTDVRNYGGLDGIVDIRQIWADLL-G------VPVEQV--LA 100 (427)
T ss_dssp CCCEECCCCSC---CHHHHHTTGGGGGCSCTTCCBCTTSCBTTSSCCSSCCHHHHHHHHHHH-T------SCGGGE--EE
T ss_pred CceEecCCCCC---ChHHCCCcHHHHHHhhhHHHhhccchhhcCCCCCCCcHHHHHHHHHHh-C------CCcceE--EE
Confidence 35789999963 3322 2233576665 444433 123578999999999999999998 3 445665 59
Q ss_pred eccChhHH--HHHHHHHHHhc--C----------CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHH
Q psy6266 83 TLSGTGAL--RVGAEFLHRIL--N----------YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYE 148 (218)
Q Consensus 83 t~G~~~al--~~~~~~l~~l~--~----------gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~ 148 (218)
|.|+++++ .++++++ ++ | ||+|++++|+|+.|...++..|+ +++.+|+. .+ ++|++.+++
T Consensus 101 t~G~~~al~~~~~~~~l--~~~~~g~~~~~~~~~gd~V~v~~p~y~~~~~~~~~~g~-~~~~v~~~-~~--g~d~~~l~~ 174 (427)
T 3ppl_A 101 GDASSLNIMFDVISWSY--IFGNNDSVQPWSKEETVKWICPVPGYDRHFSITERFGF-EMISVPMN-ED--GPDMDAVEE 174 (427)
T ss_dssp CSSCHHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHTTC-EEEEEEEE-TT--EECHHHHHH
T ss_pred eCCcHHHHHHHHHHHHH--hccCCcccccccCCCCCEEEEcCCCcHHHHHHHHHcCC-EEEEeCCC-CC--CCCHHHHHH
Confidence 99999999 4777766 45 6 99999999999999999999999 99999884 32 589999998
Q ss_pred HHhcCCCCc-EEEEcccCCCCcHH--------HHHHHh-hcCeEEEeeCCceeeccCCCC
Q psy6266 149 DLVNAPDNS-VIILHACAHNPTAQ--------QVAHMV-DKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 149 ~l~~~~~~~-~iil~~~p~NPTG~--------~l~~l~-~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.++. +++ .++++++||||||. +|.++| ++|+++||+| ++|.++.|+
T Consensus 175 ~l~~--~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~D--e~y~~~~~~ 230 (427)
T 3ppl_A 175 LVKN--PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWD--NAYAVHTLT 230 (427)
T ss_dssp HTTS--TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE--CTTTTCBSS
T ss_pred HHhc--CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEE--CCCcccccC
Confidence 8842 334 44456689999996 788898 9999999999 999986664
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-22 Score=178.03 Aligned_cols=143 Identities=13% Similarity=0.109 Sum_probs=116.2
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCCCCcC-------CCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDASPPLR-------EGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR 117 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-------~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~ 117 (218)
.+|.+..|.++||+++++++.+ ..+.... +++| ++|.|+++|+.++++++ ++|||+|++++|+|+.|.
T Consensus 72 ~~Y~~~~G~~~lr~~ia~~l~~-~~g~~~~~~~~~~~~~~i--~~t~G~~~al~~~~~~l--~~~gd~Vlv~~p~y~~~~ 146 (425)
T 2r2n_A 72 LQYSPSAGIPELLSWLKQLQIK-LHNPPTIHYPPSQGQMDL--CVTSGSQQGLCKVFEMI--INPGDNVLLDEPAYSGTL 146 (425)
T ss_dssp TSCCCTTCCHHHHHHHHHHHHH-HHCCTTTTSCGGGTCEEE--EEESSHHHHHHHHHHHH--CCTTCEEEEESSCCHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHH-hcCCCCccccccCCcCcE--EEeCcHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHH
Confidence 4699999999999999999843 3232221 2444 69999999999999887 689999999999999999
Q ss_pred HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC---------CC-cEEEEcccCCCCcHH--------HHHHHhhc
Q psy6266 118 LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP---------DN-SVIILHACAHNPTAQ--------QVAHMVDK 179 (218)
Q Consensus 118 ~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---------~~-~~iil~~~p~NPTG~--------~l~~l~~~ 179 (218)
..++..|+ +++.++.. . .++|++.+++.+++.. ++ ..+++.++||||||. +|.++|++
T Consensus 147 ~~~~~~g~-~~~~v~~~-~--~~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~ 222 (425)
T 2r2n_A 147 QSLHPLGC-NIINVASD-E--SGIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARK 222 (425)
T ss_dssp HHHGGGTC-EEEEECEE-T--TEECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCC-EEEEeCcC-C--CCCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHH
Confidence 99999999 89998873 2 3689999999886321 22 345566899999997 78899999
Q ss_pred CeEEEeeCCceeeccCCCC
Q psy6266 180 HHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 180 ~~i~ii~D~r~~y~~l~~~ 198 (218)
|+++||+| ++|.++.++
T Consensus 223 ~~~~li~D--e~~~~~~~~ 239 (425)
T 2r2n_A 223 YDFLIIED--DPYYFLQFN 239 (425)
T ss_dssp TTCEEEEE--CTTGGGBSS
T ss_pred cCCEEEEE--CCcccccCC
Confidence 99999999 999987764
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-21 Score=164.30 Aligned_cols=170 Identities=11% Similarity=0.100 Sum_probs=136.2
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
...|..+|||+.|. ..+++++.|++|..+...+ ..+| |..|.++||+++++++ + .++++| +.
T Consensus 12 ~~~~~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~~---~~~y-~~~~~~~l~~~la~~~-~------~~~~~i--~~ 73 (354)
T 3ly1_A 12 APSTDNPIRINFNE-----NPLGMSPKAQAAARDAVVK---ANRY-AKNEILMLGNKLAAHH-Q------VEAPSI--LL 73 (354)
T ss_dssp CCCSSSCEECSSCC-----CSSCCCHHHHHHHHHTGGG---TTSC-CHHHHHHHHHHHHHHT-T------SCGGGE--EE
T ss_pred CCCCCceEEccCCC-----CCCCCCHHHHHHHHHHHhh---CcCC-CCCchHHHHHHHHHHh-C------CChHHE--EE
Confidence 45788999999994 3356789999998877643 4567 5679999999999986 3 334555 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++|+.++++++ +++||+|++++|+|++|...++..|+ +++.++.. . .+.+|++.+++.+.+. +++.+++.
T Consensus 74 ~~g~~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~~~~~-~-~~~~d~~~l~~~l~~~-~~~~~v~l 147 (354)
T 3ly1_A 74 TAGSSEGIRAAIEAY--ASLEAQLVIPELTYGDGEHFAKIAGM-KVTKVKML-D-NWAFDIEGLKAAVAAY-SGPSIVYL 147 (354)
T ss_dssp ESHHHHHHHHHHHHH--CCTTCEEEEESSSCTHHHHHHHHTTC-EEEEECCC-T-TSCCCHHHHHHHHHTC-SSCEEEEE
T ss_pred eCChHHHHHHHHHHH--hCCCCeEEECCCCchHHHHHHHHcCC-EEEEecCC-C-CCCCCHHHHHHHhccC-CCCCEEEE
Confidence 999999999999877 67999999999999999999999999 89999873 2 4788999999999742 23445555
Q ss_pred ccCCCCcHH-----HHHHHhhc--CeEEEeeCCceeeccCCCC
Q psy6266 163 ACAHNPTAQ-----QVAHMVDK--HHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 163 ~~p~NPTG~-----~l~~l~~~--~~i~ii~D~r~~y~~l~~~ 198 (218)
++||||||. ++.++++. +++++|.| ++|.++.++
T Consensus 148 ~~p~nptG~~~~~~~l~~l~~~~~~~~~li~D--e~~~~~~~~ 188 (354)
T 3ly1_A 148 VNPNNPTGTITPADVIEPWIASKPANTMFIVD--EAYAEFVND 188 (354)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEE--CTTGGGCCC
T ss_pred eCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEe--ccHHHhccc
Confidence 789999997 45555544 99999999 999988775
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=170.76 Aligned_cols=171 Identities=12% Similarity=0.064 Sum_probs=126.0
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC---CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD---SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~---~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
.|.++|||++|. .++++++.|.+|+.+..++. ...++|.+..|.++||+++++++.+ .. ...+++| +
T Consensus 54 ~~~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~-~~--~~~~~~i--~ 123 (432)
T 3ei9_A 54 PDAQVISLGIGD-----TTEPIPEVITSAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYG-GL--GIGDDDV--F 123 (432)
T ss_dssp TTCCCEECSSCC-----CCSCCCHHHHHHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHT-TT--TCCGGGE--E
T ss_pred CCCCeEEccCCC-----CCCCCCHHHHHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHc-cC--CCCcceE--E
Confidence 366899999994 23577899999887766531 1345799999999999999999853 21 1445665 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCC-----------cceeEeccCCcCccccHHHHHHHH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT-----------EAREYRYWNPEKRAVDFTGMYEDL 150 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~-----------~~~~~~~~~~~~~~~d~~~~~~~l 150 (218)
.|.|+++++.++ ..+ ++|||+|++++|+|++|...++..|.. +++.++....+.+..++
T Consensus 124 ~t~G~~~al~~l-~~l--~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l------- 193 (432)
T 3ei9_A 124 VSDGAKCDISRL-QVM--FGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDL------- 193 (432)
T ss_dssp EESCHHHHHHHH-HHH--HCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCG-------
T ss_pred ECCChHHHHHHH-HHH--cCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCCh-------
Confidence 999999999875 444 579999999999999999999988841 46667663222222232
Q ss_pred hcCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 151 VNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 151 ~~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++. +++.+++.++||||||. +|.++|++|++++|+| ++|.++.++
T Consensus 194 ~~~-~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~D--ea~~~~~~~ 246 (432)
T 3ei9_A 194 STV-GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYD--SAYAMYMSD 246 (432)
T ss_dssp GGC-CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTGGGCCS
T ss_pred hhC-CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEc--cchHhhccC
Confidence 222 23333444689999996 6888899999999999 999988665
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-21 Score=168.84 Aligned_cols=173 Identities=12% Similarity=0.061 Sum_probs=135.3
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..+|||+.|. ....+++.|++|..+..+. ...+|.+. .++||+++++++.. ..+....+++| ++|.|+
T Consensus 31 ~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~~--~~~~y~~~--~~~l~~~la~~l~~-~~g~~~~~~~v--~~t~g~ 98 (399)
T 1c7n_A 31 NEVVPLSVAD-----MEFKNPPELIEGLKKYLDE--TVLGYTGP--TEEYKKTVKKWMKD-RHQWDIQTDWI--INTAGV 98 (399)
T ss_dssp TTCCCCCSSS-----CSSCCCHHHHHHHHHHHHH--CCCSSBCC--CHHHHHHHHHHHHH-HHCCCCCGGGE--EEESSH
T ss_pred CCceeeeecC-----CCCCCCHHHHHHHHHHHhc--CCCCCCCC--cHHHHHHHHHHHHH-HhCCCCChhhE--EEcCCH
Confidence 3789999994 2345788999998877653 34678764 99999999999732 22212445665 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc-CccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE-KRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++|+.++++++ +.|||+|++++|+|++|...++..|+ +++.+|....+ .+.+|++.+++.+++ +++.+++.++|
T Consensus 99 ~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v~~~~~ 173 (399)
T 1c7n_A 99 VPAVFNAVREF--TKPGDGVIIITPVYYPFFMAIKNQER-KIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFCSP 173 (399)
T ss_dssp HHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHHHTTTC-EEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEESS
T ss_pred HHHHHHHHHHh--cCCCCEEEEcCCCcHhHHHHHHHcCC-EEEecccccCCCCEEEcHHHHHHHhcc--CCCcEEEEcCC
Confidence 99999999877 67899999999999999999999999 88888763122 245799999998863 23445555789
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|++|++++|.| ++|.++.++
T Consensus 174 ~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 212 (399)
T 1c7n_A 174 HNPVGRVWKKDELQKIKDIVLKSDLMLWSD--EIHFDLIMP 212 (399)
T ss_dssp BTTTTBCCCHHHHHHHHHHHHHSSCEEEEE--CTTTTCBCT
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEEE--ccccccccC
Confidence 999996 7889999999999999 999987653
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-21 Score=169.71 Aligned_cols=178 Identities=15% Similarity=0.145 Sum_probs=138.8
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|..+|||+.|.+ +....+++.+++|..+.++... ... |.+..|.++||+++++++.. ..+...++++| ++|
T Consensus 32 ~g~~~idl~~g~~---~~~~~~~~~v~~a~~~~~~~~~~~~~-y~~~~~~~~l~~~la~~~~~-~~g~~~~~~~v--~~t 104 (407)
T 2zc0_A 32 KGVKLISLAAGDP---DPELIPRAVLGEIAKEVLEKEPKSVM-YTPANGIPELREELAAFLKK-YDHLEVSPENI--VIT 104 (407)
T ss_dssp SSCCCEECCSCCC---CTTTSCHHHHHHHHHHHHHHCGGGGS-CCCTTCCHHHHHHHHHHHHH-HSCCCCCGGGE--EEE
T ss_pred CCCceEeCCCCCC---CchhCCHHHHHHHHHHHHhhcccccc-CCCCCCCHHHHHHHHHHHHH-hcCCCCCcceE--EEe
Confidence 3668899999963 3223467889988777664311 235 99999999999999999832 22222445665 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHh----cCCCCcEE
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLV----NAPDNSVI 159 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~----~~~~~~~i 159 (218)
.|+++|+.++++++ +++||+|++++|+|+.|...++..|+ +++.++.. .+ ++|++.+++.++ +. +++.+
T Consensus 105 ~g~t~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~v~~~-~~--~~d~~~l~~~l~~~~~~~-~~~~~ 177 (407)
T 2zc0_A 105 IGGTGALDLLGRVL--IDPGDVVITENPSYINTLLAFEQLGA-KIEGVPVD-ND--GMRVDLLEEKIKELKAKG-QKVKL 177 (407)
T ss_dssp SHHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTTC-EEEEEEEE-TT--EECHHHHHHHHHHHHHTT-CCEEE
T ss_pred cCHHHHHHHHHHHh--cCCCCEEEEeCCChHHHHHHHHHcCC-EEEEcccC-CC--CCCHHHHHHHHHhhhccc-CCceE
Confidence 99999999999877 67999999999999999999999999 89998873 32 489999999886 32 23334
Q ss_pred -EEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 160 -ILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 160 -il~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++.++||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 178 v~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 223 (407)
T 2zc0_A 178 IYTIPTGQNPMGVTMSMERRKALLEIASKYDLLIIED--TAYNFMRYE 223 (407)
T ss_dssp EEECCSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTSBSS
T ss_pred EEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEE--CCCcccccC
Confidence 467899999997 7899999999999999 999987653
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=167.98 Aligned_cols=172 Identities=10% Similarity=-0.011 Sum_probs=134.2
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHH-HHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLES-FSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~-lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.+|||+.|.+ .+.+++.|.+|..+..+. ....|.+. .++ ||+++++++.. ..+...++++| ++|.|+
T Consensus 29 ~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~--~~~~y~~~--~~~~lr~~la~~l~~-~~g~~~~~~~v--~~t~g~ 96 (390)
T 1d2f_A 29 DLLPFTISDM-----DFATAPCIIEALNQRLMH--GVFGYSRW--KNDEFLAAIAHWFST-QHYTAIDSQTV--VYGPSV 96 (390)
T ss_dssp -CEECCSSSC-----SSCCCHHHHHHHHHHHTT--CCCCCCCS--CCHHHHHHHHHHHHH-HSCCCCCGGGE--EEESCH
T ss_pred CeeEeeecCC-----CCCCCHHHHHHHHHHHhC--CCCCCCCC--ChHHHHHHHHHHHHH-hcCCCCCHHHE--EEcCCH
Confidence 6899999952 345788999998877743 35678774 788 99999999843 22322455665 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc-CccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE-KRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++|+.++++++ +.|||+|++++|+|++|...++..|+ +++.+|....+ .+.+|++.+++.+++ .++.+++.++|
T Consensus 97 ~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p 171 (390)
T 1d2f_A 97 IYMVSELIRQW--SETGEGVVIHTPAYDAFYKAIEGNQR-TVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSP 171 (390)
T ss_dssp HHHHHHHHHHS--SCTTCEEEEEESCCHHHHHHHHHTTC-EEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESS
T ss_pred HHHHHHHHHHh--cCCCCEEEEcCCCcHHHHHHHHHCCC-EEEEeecccCCCccccCHHHHHHHhcc--CCCeEEEEeCC
Confidence 99999998876 57899999999999999999999999 89998874221 245799999998864 23444455689
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|.++|++|++++|.| ++|.++.++
T Consensus 172 ~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 210 (390)
T 1d2f_A 172 QNPTGKVWTCDELEIMADLCERHGVRVISD--EIHMDMVWG 210 (390)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTCBCS
T ss_pred CCCCCcCcCHHHHHHHHHHHHHcCCEEEEE--ccccccccC
Confidence 999996 6889999999999999 999887653
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-21 Score=170.31 Aligned_cols=175 Identities=13% Similarity=0.044 Sum_probs=137.1
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEecc
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLS 85 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G 85 (218)
.+|||+.|.+ .+.+++.|++|..+.++... ..++|.+..|.++||+++++++.. ..+....++ +| ++|.|
T Consensus 38 ~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~l~~~la~~l~~-~~g~~~~~~~~v--~~~~g 109 (429)
T 1yiz_A 38 KPLNLGQGFP-----DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQ-LVDRTINPMTEV--LVTVG 109 (429)
T ss_dssp CCEECCSSSC-----SSCCCHHHHHHHHHHHTCSCGGGGSCCCSSCCHHHHHHHHHHHHH-HHTSCCCTTTSE--EEESH
T ss_pred CEEEecCCCC-----CCCCCHHHHHHHHHHHhccccCccCCCCCCCcHHHHHHHHHHHHH-HhCCCCCCcCCE--EEecC
Confidence 5789999953 23467899998887764310 246799989999999999999832 212124456 65 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc--------CccccHHHHHHHHhcCCCCc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE--------KRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~--------~~~~d~~~~~~~l~~~~~~~ 157 (218)
+++|+.++++++ +.+||+|++++|+|+.|...++..|+ +++.++....+ .+.+|++.+++.+. ++.
T Consensus 110 ~~~a~~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~ 183 (429)
T 1yiz_A 110 AYEALYATIQGH--VDEGDEVIIIEPFFDCYEPMVKAAGG-IPRFIPLKPNKTGGTISSADWVLDNNELEALFN---EKT 183 (429)
T ss_dssp HHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTE
T ss_pred hHHHHHHHHHHh--cCCCCEEEEcCCCchhHHHHHHHcCC-EEEEEeCCcccccccccccCcccCHHHHHHHhc---cCc
Confidence 999999999877 67999999999999999999999999 89999874321 35689999998884 344
Q ss_pred EEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 158 VIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 158 ~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+++.++||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 184 ~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 230 (429)
T 1yiz_A 184 KMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSD--EVYEHMVFE 230 (429)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCT
T ss_pred eEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEe--ccccccccC
Confidence 44555689999996 7889999999999999 999987653
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=169.58 Aligned_cols=174 Identities=11% Similarity=0.011 Sum_probs=135.7
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.+ .+.+++.+++|. +.++. ....|.+..|.++||+++++++.. ..+....+++| ++|.
T Consensus 41 ~g~~~i~l~~~~~-----~~~~~~~v~~a~-~~l~~--~~~~y~~~~g~~~l~~~la~~~~~-~~g~~~~~~~v--~~~~ 109 (409)
T 2gb3_A 41 RGVRIHHLNIGQP-----DLKTPEVFFERI-YENKP--EVVYYSHSAGIWELREAFASYYKR-RQRVDVKPENV--LVTN 109 (409)
T ss_dssp TTCEEEECSSCCC-----CSCCCTHHHHHH-HHTCC--SSCCCCCTTCCHHHHHHHHHHHHH-TSCCCCCGGGE--EEES
T ss_pred cCCCEEeccCCCC-----CCCCCHHHHHHH-HHHhc--CCCCCCCCCCcHHHHHHHHHHHHH-HhCCCCCHHHE--EEeC
Confidence 5788999999963 234577888888 76643 345799999999999999999854 44333455665 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ +.+||+|++++|+|+++...++..|+ +++.++....+.+.+ ++.+++.+. +++.+++.++
T Consensus 110 g~t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~-~~~l~~~l~---~~~~~v~~~~ 182 (409)
T 2gb3_A 110 GGSEAILFSFAVI--ANPGDEILVLEPFYANYNAFAKIAGV-KLIPVTRRMEEGFAI-PQNLESFIN---ERTKGIVLSN 182 (409)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHHTC-EEEEEECCGGGTSCC-CTTGGGGCC---TTEEEEEEES
T ss_pred CHHHHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCC-EEEEeccCCCCCCcc-HHHHHHhhC---cCCeEEEECC
Confidence 9999999999877 67999999999999999999999999 899998742122333 555555553 3445555578
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|+++++++|.| ++|.++.++
T Consensus 183 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--ea~~~~~~~ 222 (409)
T 2gb3_A 183 PCNPTGVVYGKDEMRYLVEIAERHGLFLIVD--EVYSEIVFR 222 (409)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCS
T ss_pred CCCCCCCCcCHHHHHHHHHHHHHcCCEEEEE--CcccccccC
Confidence 9999995 7889999999999999 999987664
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=171.46 Aligned_cols=179 Identities=11% Similarity=0.089 Sum_probs=138.6
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCC-cCCCceEEEEe
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPP-LREGRAFGVQT 83 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~-~~~~~v~~~~t 83 (218)
+..+|||+.|.+ +....+++.|++|..+..+... ...+|.+..|.++||+++++++.. ..+.. ..+++| ++|
T Consensus 42 ~~~~idl~~g~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~-~~g~~~~~~~~v--~~t 115 (425)
T 1vp4_A 42 DKDAISFGGGVP---DPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLER-MYGITGLDEDNL--IFT 115 (425)
T ss_dssp STTCEECCCCSC---CGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHH-HHCCCSCCGGGE--EEE
T ss_pred CCCceeCCCCCC---CcccCCHHHHHHHHHHHHhhcchhhcCCCCCCCCHHHHHHHHHHHHh-ccCCCCCCcccE--EEe
Confidence 567899999963 3223467889988877664300 135799999999999999999843 31222 344565 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-----CCCcE
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-----PDNSV 158 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-----~~~~~ 158 (218)
.|+++++.++++++ ++|||+|++++|+|++|...++..|+ +++.++.. .+ ++|++.+++.+++. ..+..
T Consensus 116 ~G~~~al~~~~~~l--~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~v~~~-~~--~~d~~~l~~~l~~~~~~~~~~~~~ 189 (425)
T 1vp4_A 116 VGSQQALDLIGKLF--LDDESYCVLDDPAYLGAINAFRQYLA-NFVVVPLE-DD--GMDLNVLERKLSEFDKNGKIKQVK 189 (425)
T ss_dssp EHHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTTC-EEEEEEEE-TT--EECHHHHHHHHHHHHHTTCGGGEE
T ss_pred ccHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHHHHHcCC-EEEEeccC-CC--CCCHHHHHHHHHhhhhcccCCCce
Confidence 99999999998877 67999999999999999999999999 89998873 32 58999999888641 01334
Q ss_pred EE-EcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 159 II-LHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 159 ii-l~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++ +.++||||||. +|.++|+++++++|.| ++|.++.++
T Consensus 190 ~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 236 (425)
T 1vp4_A 190 FIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVED--DPYGALRYE 236 (425)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CSSTTCBCS
T ss_pred EEEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE--CCCccccCC
Confidence 43 56899999996 6889999999999999 999988763
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.1e-21 Score=169.60 Aligned_cols=174 Identities=13% Similarity=0.085 Sum_probs=139.5
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|..+|||++|. .++++++.|.+|..+.++. ..+.|.+.. .++++++++++.. ..+....+++| +.|.|
T Consensus 60 g~~~i~~~~~~-----~~~~~~~~v~~a~~~~~~~--~~~~y~~~~--~~l~~~l~~~l~~-~~g~~~~~~~v--~~~~g 127 (421)
T 3l8a_A 60 NPELLQMWVAD-----MDFLPVPEIKEAIINYGRE--HIFGYNYFN--DDLYQAVIDWERK-EHDYAVVKEDI--LFIDG 127 (421)
T ss_dssp CTTCEECCSSC-----CCSCCCHHHHHHHHHHHHH--CCSSCBCCC--HHHHHHHHHHHHH-HHCCCCCGGGE--EEESC
T ss_pred CCCeeecccCC-----CCCCCCHHHHHHHHHHHhc--CCcCCCCCC--HHHHHHHHHHHHH-HhCCCCCHHHE--EEcCC
Confidence 78999999993 3456789999998776654 456787654 8999999999854 33323455665 58999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEecc-CCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYW-NPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++|+.++++++ +.+||+|++++|+|+++...++..|. +++.+|+. ....+.+|++.+++.+.+ +++.+++.++
T Consensus 128 ~~ea~~~a~~~~--~~~gd~Vi~~~~~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~~d~~~le~~i~~--~~~~~vil~~ 202 (421)
T 3l8a_A 128 VVPAISIALQAF--SEKGDAVLINSPVYYPFARTIRLNDH-RLVENSLQIINGRFEIDFEQLEKDIID--NNVKIYLLCS 202 (421)
T ss_dssp HHHHHHHHHHHH--SCTEEEEEEEESCCHHHHHHHHHTTE-EEEEEECEEETTEEECCHHHHHHHHHH--TTEEEEEEES
T ss_pred HHHHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHHHCCC-EEEeccccccCCCeeeCHHHHHHHhhc--cCCeEEEECC
Confidence 999999999877 67999999999999999999999998 89998874 233356799999999963 3445555578
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|.++.+.
T Consensus 203 p~nptG~~~~~~~l~~l~~l~~~~~~~li~D--e~~~~~~~~ 242 (421)
T 3l8a_A 203 PHNPGGRVWDNDDLIKIAELCKKHGVILVSD--EIHQDLALF 242 (421)
T ss_dssp SBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE--ccccccccC
Confidence 9999996 7889999999999999 999987654
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=161.80 Aligned_cols=162 Identities=10% Similarity=0.077 Sum_probs=131.1
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.++|||+.|. ..+++++.|++|..+..+ ...+|.+..| ++||+++++++ + .++++| ++|.|+
T Consensus 30 ~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~---~~~~y~~~~~-~~lr~~la~~~-~------~~~~~v--~~~~g~ 91 (365)
T 3get_A 30 KEVIKLASNE-----NPFGTPPKAIECLRQNAN---KAHLYPDDSM-IELKSTLAQKY-K------VQNENI--IIGAGS 91 (365)
T ss_dssp SCCEECSSCC-----CTTCSCHHHHHHHHHHGG---GTTSCCCTTC-HHHHHHHHHHH-T------CCGGGE--EEESSH
T ss_pred CceEEecCCC-----CCCCCCHHHHHHHHHHHH---hhccCCCCCh-HHHHHHHHHHh-C------CCcceE--EECCCH
Confidence 5789999995 235678999999887764 3567988877 99999999987 3 334555 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++++.++++++ +++||+|++++|+|+.|...++..|+ +++.+++ ..+.+ +|++.+++.+. +++.+++.++||
T Consensus 92 ~~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~v~~-~~~~~-~d~~~l~~~l~---~~~~~v~~~~p~ 163 (365)
T 3get_A 92 DQVIEFAIHSK--LNSKNAFLQAGVTFAMYEIYAKQCGA-KCYKTQS-ITHNL-DEFKKLYETHK---DEIKLIFLCLPN 163 (365)
T ss_dssp HHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHHHHHTC-EEEECSS-SSCCH-HHHHHHHHHTT---TTEEEEEEESSC
T ss_pred HHHHHHHHHHH--hCCCCEEEEeCCChHHHHHHHHHcCC-EEEEEec-CCCCC-CCHHHHHHHhC---CCCCEEEEcCCC
Confidence 99999998877 68999999999999999999999999 8999887 34456 88899988885 345555557899
Q ss_pred CCcHH-----HHHHHhh--cCeEEEeeCCceeeccCC
Q psy6266 167 NPTAQ-----QVAHMVD--KHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 167 NPTG~-----~l~~l~~--~~~i~ii~D~r~~y~~l~ 196 (218)
||||. ++.++++ ++++++|.| ++|.++.
T Consensus 164 nptG~~~~~~~l~~l~~~~~~~~~li~D--e~~~~~~ 198 (365)
T 3get_A 164 NPLGECLDASEATEFIKGVNEDCLVVID--AAYNEFA 198 (365)
T ss_dssp TTTCCCCCHHHHHHHHHTSCTTSEEEEE--CTTHHHH
T ss_pred CCCCCCcCHHHHHHHHHhCCCCcEEEEe--CccHHHh
Confidence 99997 4555555 679999999 9998776
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-20 Score=161.49 Aligned_cols=165 Identities=19% Similarity=0.151 Sum_probs=132.8
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+|||+.|.+ .+++++.+.++..+.+++ ..+|.+..|.++||+++++++ + .++++| ++|.|++
T Consensus 26 ~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~---~~~y~~~~~~~~l~~~la~~~-~------~~~~~v--~~~~g~~ 88 (381)
T 1v2d_A 26 GAVNLGQGFP-----SNPPPPFLLEAVRRALGR---QDQYAPPAGLPALREALAEEF-A------VEPESV--VVTSGAT 88 (381)
T ss_dssp TCEECCCCSC-----SSCCCHHHHHHHHHHTTT---SCSCCCTTCCHHHHHHHHHHH-T------SCGGGE--EEESSHH
T ss_pred CeEEecCCCC-----CCCCCHHHHHHHHHHHHH---hcCCCCCCCCHHHHHHHHHhc-C------CChhhE--EEcCChH
Confidence 4789999952 345688999988877642 457999889999999999985 3 334554 5999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccC-CcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN-PEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
+|+.++++++ +.+||+|++++|+|+.|...++..|+ +++.++... .+.+.+|++.+++.+. +++.+++.++||
T Consensus 89 ~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~ 162 (381)
T 1v2d_A 89 EALYVLLQSL--VGPGDEVVVLEPFFDVYLPDAFLAGA-KARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPM 162 (381)
T ss_dssp HHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSC
T ss_pred HHHHHHHHHh--CCCCCEEEEcCCCchhHHHHHHHcCC-EEEEEeCCCCCccCCcCHHHHHHhcC---cCCEEEEECCCC
Confidence 9999999877 67999999999999999999999999 899888730 1235779998887774 344555556899
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
||||. +|.++|++|++++|.| ++|.++.+
T Consensus 163 nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~ 199 (381)
T 1v2d_A 163 NPTGLVFGERELEAIARLARAHDLFLISD--EVYDELYY 199 (381)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBS
T ss_pred CCCCCccCHHHHHHHHHHHHHcCCEEEEE--cCcccccc
Confidence 99996 6889999999999999 99998765
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-21 Score=164.91 Aligned_cols=172 Identities=13% Similarity=0.108 Sum_probs=136.0
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
+..+|||+.|.+ +....+++.+++|..+.+++ .....+|.+..|.++||+++++++ + .++++| ++|.
T Consensus 31 ~~~~i~l~~g~~---~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~-g------~~~~~v--~~~~ 98 (397)
T 2zyj_A 31 RPGILSFAGGLP---APELFPKEEAAEAAARILREKGEVALQYSPTEGYAPLRAFVAEWI-G------VRPEEV--LITT 98 (397)
T ss_dssp STTCEEESSCCC---CGGGCCHHHHHHHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHH-T------SCGGGE--EEES
T ss_pred CCCceecCCCCC---CchhCCHHHHHHHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHh-C------CChhhE--EEec
Confidence 456899999963 32234578888887766643 001357998899999999999998 4 334555 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ +++||+|++++|+|+.|...++..|+ +++.++.. .+ ++|++.+++.+++. +...+++.++
T Consensus 99 g~~~al~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~~~~~-~~--~~d~~~l~~~l~~~-~~~~v~~~~~ 171 (397)
T 2zyj_A 99 GSQQALDLVGKVF--LDEGSPVLLEAPSYMGAIQAFRLQGP-RFLTVPAG-EE--GPDLDALEEVLKRE-RPRFLYLIPS 171 (397)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTCC-EEEEEEEE-TT--EECHHHHHHHHHHC-CCSCEEECCB
T ss_pred cHHHHHHHHHHHh--CCCCCEEEEeCCCcHHHHHHHHHcCC-EEEecCcC-CC--CCCHHHHHHHHhhc-CCeEEEECCC
Confidence 9999999998877 67999999999999999999999999 89988873 22 48999999988752 2234445689
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 172 ~~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 211 (397)
T 2zyj_A 172 FQNPTGGLTPLPARKRLLQMVMERGLVVVED--DAYRELYFG 211 (397)
T ss_dssp SCTTTCCBCCHHHHHHHHHHHHHHTCCEEEE--CTTTTCBCS
T ss_pred CcCCCCCcCCHHHHHHHHHHHHHcCCEEEEe--CCcccccCC
Confidence 9999996 6889999999999999 999988763
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.83 E-value=8.5e-21 Score=166.95 Aligned_cols=168 Identities=14% Similarity=0.055 Sum_probs=126.2
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHH-h-hcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKEL-A-ADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~-~-~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
+|||++|.+ +++ .+++++.++++..+. . ......++|.+..|.++||+++++++ + +++++| ++|.|+
T Consensus 34 ~i~l~~g~~-~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~-~------~~~~~i--~~t~G~ 102 (422)
T 3d6k_A 34 SLDLTRGKP-SAE-QLDLSNDLLSLPGGDFRTKDGVDCRNYGGLLGIADIRELWAEAL-G------LPADLV--VAQDGS 102 (422)
T ss_dssp CEECCCCSC-CHH-HHHTTGGGGGCSTTCCBCTTCCBTTSSCCSSCCHHHHHHHHHHH-T------CCGGGE--EECSSC
T ss_pred eEeCCCCCC-Chh-hCCCcHHHHHHHHHHHhhccchhhhCCCCCCCCHHHHHHHHHHh-C------CChhHE--EEecch
Confidence 789999963 100 145666777765433 2 11112468999999999999999998 3 445665 589999
Q ss_pred hhHH--HHHHHHHHHhcC------------CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhc
Q psy6266 87 TGAL--RVGAEFLHRILN------------YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 87 ~~al--~~~~~~l~~l~~------------gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 152 (218)
++++ .++++++ ..+ +|+|++++|+|+.|...++..|+ +++.+|+. .+ ++|++.+++.+++
T Consensus 103 ~~al~l~~~~~~l--~~~~~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~-~~~~v~~~-~~--g~d~~~l~~~l~~ 176 (422)
T 3d6k_A 103 SLNIMFDLISWSY--TWGNNDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGF-EMINVPMT-DE--GPDMGVVRELVKD 176 (422)
T ss_dssp HHHHHHHHHHHHH--HHCCTTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTC-EEEEEEEE-TT--EECHHHHHHHHTS
T ss_pred HHHHHHHHHHHHh--cCcccccccccccCCCCEEEEeCCccHHHHHHHHHcCC-EEEecCCC-CC--CCCHHHHHHHHhc
Confidence 9987 6666665 345 34799999999999999999999 99999884 32 5899999988853
Q ss_pred CCCCcEE-EEcccCCCCcHH--------HHHHHhh-cCeEEEeeCCceeecc--CCC
Q psy6266 153 APDNSVI-ILHACAHNPTAQ--------QVAHMVD-KHHVYLLRSGRINMCG--LTT 197 (218)
Q Consensus 153 ~~~~~~i-il~~~p~NPTG~--------~l~~l~~-~~~i~ii~D~r~~y~~--l~~ 197 (218)
.++.+ ++.++||||||. +|.++|+ +|++++|+| ++|.. +.+
T Consensus 177 --~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~D--e~y~~~~~~~ 229 (422)
T 3d6k_A 177 --PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWD--NAYALHTLSD 229 (422)
T ss_dssp --TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEE--CTTTTCBSSS
T ss_pred --CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEE--CCccccccCC
Confidence 23344 447899999997 6788888 899999999 99974 544
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-20 Score=161.07 Aligned_cols=168 Identities=10% Similarity=0.003 Sum_probs=133.4
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..+|||+.|. ..+++++.|++|..+...+ ...++|.. .|.++||+++++++ + . ..+++| +.|.|+
T Consensus 30 ~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~~-~~~~~y~~-~~~~~l~~~la~~~-g-~----~~~~~i--~~~~g~ 94 (367)
T 3euc_A 30 HGLVKLDAME-----NPYRLPPALRSELAARLGE-VALNRYPV-PSSEALRAKLKEVM-Q-V----PAGMEV--LLGNGS 94 (367)
T ss_dssp TTCEECCSSC-----CCCCCCHHHHHHHHHHHHH-HHTTCSCC-CCHHHHHHHHHHHH-T-C----CTTCEE--EEEEHH
T ss_pred CCeeEccCCC-----CCCCCCHHHHHHHHHHhhh-hhhhcCCC-CcHHHHHHHHHHHh-C-C----CCcceE--EEcCCH
Confidence 5789999995 2346788999987776642 13467866 69999999999987 3 2 134554 589999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++|+.++++++ +.+||+|++++|+|+++...++..|+ +++.++.. . .+.+|++.+++.+.+. ++.+++.++||
T Consensus 95 t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~l~~~--~~~~v~~~~~~ 167 (367)
T 3euc_A 95 DEIISMLALAA--ARPGAKVMAPVPGFVMYAMSAQFAGL-EFVGVPLR-A-DFTLDRGAMLAAMAEH--QPAIVYLAYPN 167 (367)
T ss_dssp HHHHHHHHHHT--CCTTCEEEEEESCSCCSCHHHHTTTC-EEEEEECC-T-TSCCCHHHHHHHHHHH--CCSEEEEESSC
T ss_pred HHHHHHHHHHH--cCCCCEEEEcCCCHHHHHHHHHHcCC-eEEEecCC-C-CCCCCHHHHHHHhhcc--CCCEEEEcCCC
Confidence 99999998876 67999999999999999999999999 89999874 2 4678999999998752 22334446899
Q ss_pred CCcHH--------HHHHHhhcC--eEEEeeCCceeeccCCCC
Q psy6266 167 NPTAQ--------QVAHMVDKH--HVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~--~i~ii~D~r~~y~~l~~~ 198 (218)
||||. +|.++|++| ++++|.| ++|.++...
T Consensus 168 nptG~~~~~~~l~~i~~~~~~~~~~~~li~D--e~~~~~~~~ 207 (367)
T 3euc_A 168 NPTGNLFDAADMEAIVRAAQGSVCRSLVVVD--EAYQPFAQE 207 (367)
T ss_dssp TTTCCCCCHHHHHHHHHHTBTTSCBCEEEEE--CTTCCSSSC
T ss_pred CCCCCCCCHHHHHHHHHhhhhcCCCcEEEEe--Ccchhhccc
Confidence 99996 678889999 9999999 999987654
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.6e-20 Score=158.36 Aligned_cols=164 Identities=17% Similarity=0.136 Sum_probs=129.1
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
++.+|||+.|. ..+++++.|++|+.+... ....| |..|.++||+++++++. .++++| +.|.|
T Consensus 31 ~~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~---~~~~y-~~~~~~~lr~~la~~~~-------~~~~~v--~~~~g 92 (363)
T 3ffh_A 31 LTKITKLSSNE-----NPLGTSKKVAAIQANSSV---ETEIY-PDGWASSLRKEVADFYQ-------LEEEEL--IFTAG 92 (363)
T ss_dssp CSCCEECSSCS-----CTTCCCHHHHHHHHTCBS---CCCBC-----CHHHHHHHHHHHT-------CCGGGE--EEESS
T ss_pred CCceEEccCCC-----CCCCCCHHHHHHHHHHHH---HhhcC-CCcchHHHHHHHHHHhC-------CChhhE--EEeCC
Confidence 35789999994 235678999998877552 34556 66799999999999873 334555 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.++++++ +.+||+|++++|+|+.|...++..|+ +++.++.. . .+.+|++.+++.+. +++.+++.++|
T Consensus 93 ~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~i~---~~~~~v~~~~p 164 (363)
T 3ffh_A 93 VDELIELLTRVL--LDTTTNTVMATPTFVQYRQNALIEGA-EVREIPLL-Q-DGEHDLEGMLNAID---EKTTIVWICNP 164 (363)
T ss_dssp HHHHHHHHHHHH--CSTTCEEEEEESSCHHHHHHHHHHTC-EEEEEECC-T-TSCCCHHHHHHHCC---TTEEEEEEESS
T ss_pred HHHHHHHHHHHH--ccCCCEEEEcCCChHHHHHHHHHcCC-EEEEecCC-C-CCCcCHHHHHHhcc---cCCCEEEEeCC
Confidence 999999998877 67999999999999999999999999 99999874 2 46789999998885 34555555789
Q ss_pred CCCcHH-----HHHHHhhcC--eEEEeeCCceeeccCCC
Q psy6266 166 HNPTAQ-----QVAHMVDKH--HVYLLRSGRINMCGLTT 197 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~--~i~ii~D~r~~y~~l~~ 197 (218)
|||||. ++.++++.+ ++++|.| ++|.++.+
T Consensus 165 ~nptG~~~~~~~l~~l~~~~~~~~~li~D--e~~~~~~~ 201 (363)
T 3ffh_A 165 NNPTGNYIELADIQAFLDRVPSDVLVVLD--EAYIEYVT 201 (363)
T ss_dssp CTTTCCCCCHHHHHHHHTTSCTTSEEEEE--CTTGGGCS
T ss_pred CCCcCCCcCHHHHHHHHHhCCCCcEEEEe--CchHhhcC
Confidence 999997 677777666 9999999 99997764
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.1e-20 Score=158.73 Aligned_cols=140 Identities=16% Similarity=0.161 Sum_probs=117.9
Q ss_pred CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH
Q psy6266 43 LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 43 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~ 122 (218)
....|.+..|.++||+++++++.+ ..+++| ++|.|+++|+.++++++ +.|||+|++++|+|+++...++.
T Consensus 55 ~~~~y~~~~g~~~l~~~la~~~~~------~~~~~v--~~~~g~~~a~~~~~~~l--~~~gd~Vl~~~~~~~~~~~~~~~ 124 (375)
T 3op7_A 55 TKLNYGWIEGSPAFKKSVSQLYTG------VKPEQI--LQTNGATGANLLVLYSL--IEPGDHVISLYPTYQQLYDIPKS 124 (375)
T ss_dssp SCCSSCCTTCCHHHHHHHHTTSSS------CCGGGE--EEESHHHHHHHHHHHHH--CCTTCEEEEEESSCTHHHHHHHH
T ss_pred CCcCCCCCCChHHHHHHHHHHhcc------CChhhE--EEcCChHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHH
Confidence 467899999999999999998743 345665 59999999999999877 68999999999999999999999
Q ss_pred hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeecc
Q psy6266 123 AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 123 ~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
.|+ +++.++....+.+.+|++.+++.++. ++.+++.++||||||. +|.++|++|++++|.| ++|.+
T Consensus 125 ~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~D--e~~~~ 198 (375)
T 3op7_A 125 LGA-EVDLWQIEEENGWLPDLEKLRQLIRP---TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSD--EVYRS 198 (375)
T ss_dssp TTC-EEEEEEEEGGGTTEECHHHHHHHCCT---TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE--CCSCC
T ss_pred cCC-EEEEEeccccCCCCCCHHHHHHhhcc---CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEE--ccccc
Confidence 999 89999875444556799999998853 3444455689999996 7889999999999999 99998
Q ss_pred CCCC
Q psy6266 195 LTTQ 198 (218)
Q Consensus 195 l~~~ 198 (218)
+.++
T Consensus 199 ~~~~ 202 (375)
T 3op7_A 199 FSEL 202 (375)
T ss_dssp CSSS
T ss_pred cccc
Confidence 8775
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=4e-21 Score=167.78 Aligned_cols=173 Identities=11% Similarity=0.037 Sum_probs=119.8
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC---CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS---LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
++..+|||+.|. ++..+++.+.++++..++..+.. ..+.|.+..|.++||+++++++.. ..+...++++| +
T Consensus 29 ~~~~~i~l~~g~---p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~-~~g~~~~~~~i--~ 102 (417)
T 3g7q_A 29 RTPGAIMLGGGN---PAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRE-TLGWDIEPQNI--A 102 (417)
T ss_dssp ---CCEECSCCC---CCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHH-HHCCCCCGGGE--E
T ss_pred cCCCceEecCcC---CCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHH-HhCCCCCcccE--E
Confidence 346789999995 34433344778888777664310 124799999999999999999843 33333566776 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCC-----eEEec-CCCchhHHHHHHHh----CCCcceeEeccCCc--CccccHHHHHHH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYT-----TFYYS-KPTWENHRLVFLNA----GFTEAREYRYWNPE--KRAVDFTGMYED 149 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd-----~V~i~-~P~y~~y~~~~~~~----g~~~~~~~~~~~~~--~~~~d~~~~~~~ 149 (218)
+|.|+++|+.++++++ +.+|| +|+++ +|+|+.|...+... +. .+...+. ..+ .+.+|++.++
T Consensus 103 ~t~G~t~al~~~~~~l--~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~d~~~l~-- 176 (417)
T 3g7q_A 103 LTNGSQSAFFYLFNLF--AGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSA-RPNIELL-PEGQFKYHVDFEHLH-- 176 (417)
T ss_dssp EESCHHHHHHHHHHHH--SBC----CCBEEEESSCCCHHHHHC-----CCEEEC-CCEEEEE-GGGEEEEECCGGGCC--
T ss_pred EeCCcHHHHHHHHHHH--cCCCccCCcceEEEeCCCccccchhhccchhhhccc-cCccccc-CCcccccccCHHHhc--
Confidence 9999999999999887 67887 99998 99999998665322 22 2332222 111 2346777665
Q ss_pred HhcCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeecc
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+ .+++.++++++||||||. +|.++|++|++++|+| ++|..
T Consensus 177 ~---~~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~~~~li~D--e~~~~ 224 (417)
T 3g7q_A 177 I---GEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVID--NAYGV 224 (417)
T ss_dssp C---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE--CTTCT
T ss_pred c---ccCceEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEe--CCCcc
Confidence 3 345677777899999996 6889999999999999 88874
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=5.8e-20 Score=161.96 Aligned_cols=178 Identities=12% Similarity=0.020 Sum_probs=134.9
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC----------CccCcCCCCcHHHHHHHHHHhcCC-CCCCCcCCC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL----------NHEYLPVLGLESFSSAATRMLLGG-DASPPLREG 76 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~----------~~~Y~~~~G~~~lr~aia~~~~~~-~~~~~~~~~ 76 (218)
.+|+|++.. ++...+.+.++..+....... ..+|.+..|.++||+++++++... ..+...+++
T Consensus 39 ~~i~lg~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~ 112 (435)
T 3piu_A 39 GIIQMGLAE------NQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN 112 (435)
T ss_dssp SBEECSSCC------CCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG
T ss_pred CeEEecccc------ccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH
Confidence 367777763 345577788776654321000 157999999999999999998520 222224556
Q ss_pred ceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-HhCCCcceeEeccCCcCccccHHHHHHHHhcC--
Q psy6266 77 RAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-- 153 (218)
Q Consensus 77 ~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-- 153 (218)
+| ++|.|+++|+.++++++ +++||+|++++|+|+++...+. ..|+ +++.++......+.+|++.+++.+++.
T Consensus 113 ~v--~~~~gg~~a~~~~~~~l--~~~gd~vl~~~p~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~l~~~~~ 187 (435)
T 3piu_A 113 HL--VLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKWRTGV-EIVPIHCTSSNGFQITETALEEAYQEAEK 187 (435)
T ss_dssp GE--EEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTTTTCC-EEEEEECCGGGTSCCCHHHHHHHHHHHHH
T ss_pred HE--EEcCChHHHHHHHHHHh--cCCCCeEEECCCccccHHHHHHHhcCC-EEEEeeCCCccCCcCCHHHHHHHHHHHHh
Confidence 65 59999999999999877 6799999999999999998887 7898 899998854444568999999988642
Q ss_pred -CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 154 -PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 154 -~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
..++.+++..+||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 188 ~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--ea~~~~~~~ 239 (435)
T 3piu_A 188 RNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD--EIYSGTAFS 239 (435)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTGGGCCS
T ss_pred cCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEe--ccccccccC
Confidence 124556666789999996 6888999999999999 999986654
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=9.2e-22 Score=171.14 Aligned_cols=176 Identities=16% Similarity=0.142 Sum_probs=136.5
Q ss_pred CCCC--ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGE--IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~--~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..|. .+|||++|.+ ++.+++.|++|..+.+.. ..++|.+. .++||+++++++.. ..+...++++| +
T Consensus 26 ~~g~~~~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~--~~~~y~~~--~~~l~~~la~~l~~-~~g~~~~~~~v--~ 93 (392)
T 3b1d_A 26 ETETDPQLLPAWIADM-----DFEVMPEVKQAIHDYAEQ--LVYGYTYA--SDELLQAVLDWEKS-EHQYSFDKEDI--V 93 (392)
Confidence 3455 8999999963 345678888887776643 35678765 89999999999865 44433455665 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc-CccccHHHHHHHHhcCCCCcEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE-KRAVDFTGMYEDLVNAPDNSVII 160 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~ii 160 (218)
+|.|+++|+.++++++ +.+||+|++++|+|+.|...++..|+ +++.++....+ .+.+|++.+++.+++ +++.++
T Consensus 94 ~~~g~~~a~~~~~~~~--~~~gd~vl~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~g~~~~d~~~l~~~l~~--~~~~~v 168 (392)
T 3b1d_A 94 FVEGVVPAISIAIQAF--TKEGEAVLINSPVYPPFARSVRLNNR-KLVSNSLKEENGLFQIDFEQLENDIVE--NDVKLY 168 (392)
Confidence 9999999999998877 57899999999999999999999998 88888773222 244788888887753 223344
Q ss_pred EcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 161 LHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 161 l~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+.++||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 169 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 212 (392)
T 3b1d_A 169 LLCNPHNPGGRVWEREVLEQIGHLCQKHHVILVSD--EIHQDLTLF 212 (392)
Confidence 45789999997 6888999999999999 999988765
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1e-19 Score=158.78 Aligned_cols=167 Identities=13% Similarity=0.084 Sum_probs=123.9
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-C--CCCccCcCCCCcHHHHHHHHHHhc-CCCCCCCcCCCceEEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-D--SLNHEYLPVLGLESFSSAATRMLL-GGDASPPLREGRAFGV 81 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~--~~~~~Y~~~~G~~~lr~aia~~~~-~~~~~~~~~~~~v~~~ 81 (218)
|..+|+|+.|.+ .+++++.|++|..+.++. . ...++|.+..|.++||+++++++. + . .++++| +
T Consensus 32 ~~~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g-~----~~~~~v--~ 99 (400)
T 3asa_A 32 QHTVINLSIGDT-----TQPLNASVAEAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRG-F----VDAKEI--F 99 (400)
T ss_dssp TSCCEECSSCCC-----CCCCCHHHHHHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTT-S----SCGGGE--E
T ss_pred CCceEeccCCCC-----CCCCCHHHHHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcC-C----CCHHHE--E
Confidence 678999999952 345678888887765533 1 124679999999999999999863 3 2 344565 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCc-ceeEeccCCcCccccHHHHHHHHhcCCCCcEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTE-AREYRYWNPEKRAVDFTGMYEDLVNAPDNSVII 160 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~-~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ii 160 (218)
+|.|+++++.+++.+ +.|||+|++++|+|++|...++..|+ + ++.++....+....+++ +..+...++
T Consensus 100 ~~~G~~~al~~~~~~---~~~gd~Vl~~~p~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~l~-------~~~~~~~v~ 168 (400)
T 3asa_A 100 ISDGAKVDLFRLLSF---FGPNQTVAIQDPSYPAYLDIARLTGA-KEIIALPCLQENAFFPEFP-------EDTHIDILC 168 (400)
T ss_dssp EESCHHHHHHHHHHH---HCSSCEEEEEESCCHHHHHHHHHTTC-SEEEEEECCGGGTTCCCCC-------TTCCCSEEE
T ss_pred EccChHHHHHHHHHH---cCCCCEEEECCCCcHHHHHHHHHcCC-cceEecccchhcCcccChh-------hccCccEEE
Confidence 899999999986543 46899999999999999999999998 8 88888632222222321 112223444
Q ss_pred EcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 161 LHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 161 l~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+ ++||||||. +|.++|+++++++|.| ++|.++.++
T Consensus 169 l-~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--e~~~~~~~~ 211 (400)
T 3asa_A 169 L-CSPNNPTGTVLNKDQLRAIVHYAIEHEILILFD--AAYSTFISD 211 (400)
T ss_dssp E-ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTGGGCCC
T ss_pred E-eCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEE--chhhhhhcC
Confidence 4 589999996 6888999999999999 999987654
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.8e-19 Score=154.87 Aligned_cols=166 Identities=10% Similarity=0.041 Sum_probs=127.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|..+|||+.|. ..+++++.|++|..+.....+ ...+|.. .|.++||+++++++ + .++++| ++
T Consensus 23 ~~~~~~i~l~~~~-----~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-~~~~~lr~~la~~~-g------~~~~~i--~~ 87 (360)
T 3hdo_A 23 PDIASWIKLNTNE-----NPYPPSPEVVKAILEELGPDGAALRIYPS-ASSQKLREVAGELY-G------FDPSWI--IM 87 (360)
T ss_dssp SCCTTSEECSSCC-----CSSCCCHHHHHHHHHHHTTTCGGGGSCCC-SSCHHHHHHHHHHH-T------CCGGGE--EE
T ss_pred ccccceeeccCCC-----CCCCCCHHHHHHHHHHHhcccchhhcCCC-CchHHHHHHHHHHh-C------cCcceE--EE
Confidence 3577899999995 245778999999888774310 1456754 47799999999987 3 344565 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++|+.++++++ ++|||+|++++|+|++|...++..|+ +++.++.. . .+.+ +++.+....+ +++.
T Consensus 88 t~g~~~al~~~~~~l--~~~gd~Vl~~~p~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~------~~l~~~~~~~-~v~i 155 (360)
T 3hdo_A 88 ANGSDEVLNNLIRAF--AAEGEEIGYVHPSYSYYGTLAEVQGA-RVRTFGLT-G-DFRI------AGFPERYEGK-VFFL 155 (360)
T ss_dssp ESSHHHHHHHHHHHH--CCTTCEEEEESSSCTHHHHHHHHHTC-EEEEECBC-T-TSSB------TTCCSSBCSS-EEEE
T ss_pred cCCHHHHHHHHHHHH--hCCCCEEEEcCCChHHHHHHHHHCCC-EEEEeeCC-C-CCCH------HHHHhhcCCC-EEEE
Confidence 999999999999877 68999999999999999999999999 89998872 2 2222 2333221122 4555
Q ss_pred ccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 163 ACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 163 ~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++||||||. ++.++++++++++|.| ++|.++...
T Consensus 156 ~~p~nptG~~~~~~~l~~l~~~~~~~li~D--e~~~~~~~~ 194 (360)
T 3hdo_A 156 TTPNAPLGPSFPLEYIDELARRCAGMLVLD--ETYAEFAES 194 (360)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHBSSEEEEE--CTTGGGSSC
T ss_pred eCCCCCCCCCcCHHHHHHHHHHCCCEEEEE--CChHhhCCc
Confidence 789999997 8999999999999999 999987543
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.3e-20 Score=160.88 Aligned_cols=177 Identities=13% Similarity=0.054 Sum_probs=131.1
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhh---------cCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCC--cCCC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAA---------DDSLNHEYLPVLGLESFSSAATRMLLGGDASPP--LREG 76 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~---------~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~--~~~~ 76 (218)
.+|+|+.+. + +..++.++++..+... ......+|.+..|.++||+++++++.. ..+.. .+++
T Consensus 37 ~~i~l~~~~----~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~-~~g~~~~~~~~ 109 (428)
T 1iay_A 37 GVIQMGLAE----N--QLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEK-TRGGRVRFDPE 109 (428)
T ss_dssp SBEECSSCC----C--CSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHH-HTTTCSCCCTT
T ss_pred ceeeecccc----c--hhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHH-hcCCCCCCChh
Confidence 567888663 2 3345678877664321 000135799999999999999999842 22211 4456
Q ss_pred ceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-HhCCCcceeEeccCCcCccccHHHHHHHHhcC--
Q psy6266 77 RAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-- 153 (218)
Q Consensus 77 ~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-- 153 (218)
+| ++|.|+++++.++++++ ++|||+|++++|+|+.|...+. ..|+ +++.++....+.+.+|++.+++.+++.
T Consensus 110 ~i--~~~~G~~~ai~~~~~~~--~~~gd~Vl~~~p~y~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~ 184 (428)
T 1iay_A 110 RV--VMAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRWRTGV-QLIPIHCESSNNFKITSKAVKEAYENAQK 184 (428)
T ss_dssp SC--EEEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTTTTCC-EEEEECCCTTTTTCCCHHHHHHHHHHHHH
T ss_pred hE--EEccChHHHHHHHHHHh--CCCCCeEEEccCCCcchHHHHHHhcCC-EEEEeecCCccCCcCCHHHHHHHHHHHHh
Confidence 65 59999999999998877 6799999999999999987553 6788 888888743234577999999888641
Q ss_pred -CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 154 -PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 154 -~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.++..+++.++||||||. +|.++|+++++++|.| ++|.++.++
T Consensus 185 ~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~D--ea~~~~~~~ 236 (428)
T 1iay_A 185 SNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCD--EIYAATVFD 236 (428)
T ss_dssp TTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE--CTTGGGCCS
T ss_pred cCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEe--ccccccccC
Confidence 224555566789999997 6889999999999999 999987664
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-20 Score=156.17 Aligned_cols=161 Identities=9% Similarity=0.098 Sum_probs=125.7
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|. ...++++.|++|..+..+. ..+| |..|.++||+++++++ + .++++| +.|.
T Consensus 24 ~~~~~idl~~~~-----~~~~~~~~v~~a~~~~~~~---~~~y-~~~~~~~l~~~la~~~-~------~~~~~i--~~~~ 85 (361)
T 3ftb_A 24 KGRELLDYSSNI-----NPLGIPKSFLNNIDEGIKN---LGVY-PDVNYRRLNKSIENYL-K------LKDIGI--VLGN 85 (361)
T ss_dssp ----CEETTCCC-----CTTCSCHHHHTTHHHHHHG---GGSC-CCTTCHHHHHHHHHHH-T------CCSCEE--EEES
T ss_pred CCCCEEEecCCC-----CCCCCCHHHHHHHHHHHHH---hcCC-CCccHHHHHHHHHHHh-C------CCcceE--EEcC
Confidence 577899999995 2345688999988776643 3567 6689999999999988 3 334554 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ |+|++++|+|+++...++..|+ +++.++... ...++++.+++.+++ +.+++.++
T Consensus 86 g~t~al~~~~~~~------d~vi~~~~~~~~~~~~~~~~g~-~~~~~~~~~--~~~~~~~~l~~~l~~----~~~v~i~~ 152 (361)
T 3ftb_A 86 GASEIIELSISLF------EKILIIVPSYAEYEINAKKHGV-SVVFSYLDE--NMCIDYEDIISKIDD----VDSVIIGN 152 (361)
T ss_dssp SHHHHHHHHHTTC------SEEEEEESCCTHHHHHHHHTTC-EEEEEECCT--TSCCCHHHHHHHTTT----CSEEEEET
T ss_pred CHHHHHHHHHHHc------CcEEEecCChHHHHHHHHHcCC-eEEEeecCc--ccCCCHHHHHHhccC----CCEEEEeC
Confidence 9999999887643 9999999999999999999999 999998742 246788888888753 33445578
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|+++|++|++++|.| ++|.++.++
T Consensus 153 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 192 (361)
T 3ftb_A 153 PNNPNGGLINKEKFIHVLKLAEEKKKTIIID--EAFIEFTGD 192 (361)
T ss_dssp TBTTTTBCCCHHHHHHHHHHHHHHTCEEEEE--CSSGGGTCC
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCCEEEEE--CcchhhcCC
Confidence 9999996 6888888999999999 999987764
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.7e-20 Score=170.53 Aligned_cols=173 Identities=11% Similarity=0.019 Sum_probs=129.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCC-CC-CCcC-CCceEEEEec
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGD-AS-PPLR-EGRAFGVQTL 84 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~-~~-~~~~-~~~v~~~~t~ 84 (218)
.+|||++|.+ +. ++++.++++..++. . ...|.|..|.++||+++++++.. . ++ .... +++| ++|.
T Consensus 104 ~~i~l~~g~~---~~--~~~~~v~a~~~~~~-~---~~y~~~~~g~~~lr~~ia~~l~~-~~~~~~~~~~~~~i--~~t~ 171 (533)
T 3f6t_A 104 DAVNYCHTEL---GL--NRDKVVAEWVNGAV-A---NNYPVPDRCLVNTEKIINYFLQE-LSYKDANLAEQTDL--FPTE 171 (533)
T ss_dssp HHHHHHHHTT---CC--CHHHHHHHHHHHHH-T---CSCCSSSSCCHHHHHHHHHHHHH-HHTTTCCCGGGEEE--EEEE
T ss_pred hheeccCCCC---Cc--CCcHHHHHHHHHHH-h---CCCCCCcccHHHHHHHHHHHHHH-hcCCCCCCCCcceE--EEEC
Confidence 5789999953 33 33445555444444 2 23244889999999999999843 3 22 2233 3454 6999
Q ss_pred cChhHHHHHHHHHH---HhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccC--CcCccccHHHHHHHHhcCCCCcEE
Q psy6266 85 SGTGALRVGAEFLH---RILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN--PEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 85 G~~~al~~~~~~l~---~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~--~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
|+++|+.++++++. .++|||+|++++|+|++|...++..|+ +++.+++.. .+.+.+|++.+++.+. +++.+
T Consensus 172 G~t~al~~~~~~l~~~~l~~~gd~Viv~~p~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~d~~~l~~~l~---~~~k~ 247 (533)
T 3f6t_A 172 GGTAAIVYAFHSLAENHLLKKGDKIAINEPIFTPYLRIPELKDY-ELVEVDLHSYEKNDWEIEPNEIEKLKD---PSIKA 247 (533)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTCEEEEESSCCHHHHTSGGGGGS-EEEEECCCEETTTTSEECHHHHHHHSC---TTEEE
T ss_pred CHHHHHHHHHHHhhhhhccCCcCEEEEcCCCcHHHHHHHHHcCC-eEEEEEecCCcccCCCCCHHHHHHHhC---CCCeE
Confidence 99999999988621 167999999999999999999999999 888888743 3456789999988874 34555
Q ss_pred EEcccCCCCcHH--------HHHHHhh-cCeEEEeeCCceeeccCCCC
Q psy6266 160 ILHACAHNPTAQ--------QVAHMVD-KHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 160 il~~~p~NPTG~--------~l~~l~~-~~~i~ii~D~r~~y~~l~~~ 198 (218)
++.++||||||. +|+++|+ +|++++|.| ++|.++.++
T Consensus 248 v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~D--e~y~~~~~~ 293 (533)
T 3f6t_A 248 LIVVNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISD--EVYGAFVPN 293 (533)
T ss_dssp EEEESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEE--CTTGGGSTT
T ss_pred EEEeCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEc--CCccccccC
Confidence 555689999997 6788888 689999999 999988775
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=156.53 Aligned_cols=171 Identities=8% Similarity=-0.007 Sum_probs=131.6
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.|||+.|.+ .+.+++.+.+|..+.++. ....++|.+..| ++||+++++++.. ..+...++++| ++|.|++
T Consensus 32 ~idl~~~~~-----~~~~~~~v~~a~~~~~~~~~~~~~~y~~~~~-~~l~~~la~~l~~-~~g~~~~~~~v--~~~~G~~ 102 (369)
T 3cq5_A 32 DIRLNTNEN-----PYPPSEALVADLVATVDKIATELNRYPERDA-VELRDELAAYITK-QTGVAVTRDNL--WAANGSN 102 (369)
T ss_dssp SEECSSCCC-----CSCCCHHHHHHHHHHHHHHGGGTTSCCCTTC-HHHHHHHHHHHHH-HHCCCCCGGGE--EEESHHH
T ss_pred ceeccCCCC-----CCCCCHHHHHHHHHHHHhcccccccCCCccH-HHHHHHHHHhhhh-cccCCCChHhE--EECCChH
Confidence 389999963 245678888887766543 112467877766 8999999999732 22212445665 5999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++.++++++ +.+||+|++++|+|+.|...++..|+ +++.++. .+.+.+|++.+++.+++. +...++ .++|||
T Consensus 103 ~al~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~g~-~~~~v~~--~~~~~~d~~~l~~~i~~~-~~~~v~-~~~~~n 175 (369)
T 3cq5_A 103 EILQQLLQAF--GGPGRTALGFQPSYSMHPILAKGTHT-EFIAVSR--GADFRIDMDVALEEIRAK-QPDIVF-VTTPNN 175 (369)
T ss_dssp HHHHHHHHHH--CSTTCEEEEEESSCTHHHHHHHHTTC-EEEEEEC--CTTSSCCHHHHHHHHHHH-CCSEEE-EESSCT
T ss_pred HHHHHHHHHh--cCCCCEEEEcCCChHHHHHHHHHcCC-EEEEecC--CcCCCCCHHHHHHHhhcc-CCCEEE-EeCCCC
Confidence 9999988877 67999999999999999999999999 8998885 234578999999988641 123444 478999
Q ss_pred CcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 168 PTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 168 PTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
|||. ++.++++.+++++|.| ++|.++.+
T Consensus 176 ptG~~~~~~~l~~l~~~~~~~li~D--e~~~~~~~ 208 (369)
T 3cq5_A 176 PTGDVTSLDDVERIINVAPGIVIVD--EAYAEFSP 208 (369)
T ss_dssp TTCCCCCHHHHHHHHHHCSSEEEEE--CTTGGGCC
T ss_pred CCCCCCCHHHHHHHHHhCCCEEEEE--CCchhhcC
Confidence 9997 7888998888999999 99998765
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-20 Score=165.26 Aligned_cols=162 Identities=9% Similarity=-0.011 Sum_probs=116.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhh-c-CCCCccCcCCCCc-----HHHHHHHHHHhcCCCCCCCcCC-
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAA-D-DSLNHEYLPVLGL-----ESFSSAATRMLLGGDASPPLRE- 75 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~-~-~~~~~~Y~~~~G~-----~~lr~aia~~~~~~~~~~~~~~- 75 (218)
..|..+|||++|. + ++++++.++++..+... + .....+|.+..|. ++||+++++++.. . +..+.+
T Consensus 19 ~~~~~~i~l~~g~---p--~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~~-~-g~~~~~~ 91 (391)
T 3bwn_A 19 PMSDFVVNLDHGD---P--TAYEEYWRKMGDRCTVTIRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHGV-V-GNAATED 91 (391)
T ss_dssp CTTTSCEECSSCC---C--GGGHHHHHHTGGGSCEEECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHHH-H-CSBCCSS
T ss_pred cCCCCeeEcCCCC---C--CCCCCHHHHHhHHHHhhcCccchhhcCCCCCCcccccCHHHHHHHHHHHHh-c-CCCCCCC
Confidence 3577899999995 2 34556667766432221 1 0134679999999 9999999998743 3 233444
Q ss_pred CceEEEEeccChhHHHHHHHHHHHhcCCC----eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHh
Q psy6266 76 GRAFGVQTLSGTGALRVGAEFLHRILNYT----TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLV 151 (218)
Q Consensus 76 ~~v~~~~t~G~~~al~~~~~~l~~l~~gd----~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~ 151 (218)
++| ++|.|+++++.++++++ ++||| +|++++|+|++|...++..|+ +++.++.. .+ +++
T Consensus 92 ~~i--~~t~G~~~al~~~~~~l--~~~Gd~~~~~Vlv~~P~y~~~~~~~~~~g~-~~~~~~~d-~~--~l~--------- 154 (391)
T 3bwn_A 92 RYI--VVGTGSTQLCQAAVHAL--SSLARSQPVSVVAAAPFYSTYVEETTYVRS-GMYKWEGD-AW--GFD--------- 154 (391)
T ss_dssp SEE--EEEEHHHHHHHHHHHHH--HHTSSSSSEEEEECSSCCTHHHHHHHTTCB-TTEEEEEE-ST--TCC---------
T ss_pred CeE--EEeCChHHHHHHHHHHh--cCCCCCCcceEEEcCCCchhHHHHHHHcCC-eEEEecCC-HH--HcC---------
Confidence 455 59999999999999887 57999 999999999999999999999 89888763 22 222
Q ss_pred cCCCCcEEEEcccCCCCcHHHHHHHhhc-Ce--EEEeeCCceeec
Q psy6266 152 NAPDNSVIILHACAHNPTAQQVAHMVDK-HH--VYLLRSGRINMC 193 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~~l~~l~~~-~~--i~ii~D~r~~y~ 193 (218)
. +++.+++.++||||||..+.+++++ ++ ++||+| ++|.
T Consensus 155 ~--~~~k~v~l~~p~NPtG~~~~~l~~~~~~~~~~ii~D--e~y~ 195 (391)
T 3bwn_A 155 K--KGPYIELVTSPNNPDGTIRETVVNRPDDDEAKVIHD--FAYY 195 (391)
T ss_dssp C--CSCEEEEEESSCTTTCCCCCCCC-----CCCEEEEE--CTTC
T ss_pred C--CCCEEEEECCCCCCCchhHHHHHHHhhcCCCEEEEe--CCCC
Confidence 1 3445555589999999832344444 55 999999 8886
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-19 Score=154.93 Aligned_cols=165 Identities=13% Similarity=0.063 Sum_probs=124.7
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|..+|||+.|.. .+.+++.+++|..+..+. .++|.. .|.++||+++++++ + .++++| ++|.
T Consensus 22 ~~~~~idl~~~~~-----~~~~~~~v~~a~~~~~~~---~~~y~~-~~~~~l~~~la~~~-~------~~~~~v--~~~~ 83 (364)
T 1lc5_A 22 SPDQLLDFSANIN-----PLGMPVSVKRALIDNLDC---IERYPD-ADYFHLHQALARHH-Q------VPASWI--LAGN 83 (364)
T ss_dssp CGGGSEECSSCCC-----TTCCCHHHHHHHHHTGGG---GGSCCC-TTCHHHHHHHHHHH-T------SCGGGE--EEES
T ss_pred CccceEEeccccC-----CCCCCHHHHHHHHHHHHH---hhcCCC-CCHHHHHHHHHHHH-C------cCHHHE--EECC
Confidence 3557899999951 234678899888776642 467854 69999999999987 3 334555 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++++.++++++ +||+|++++|+|+.|...++..|+ +++.++....+.+.+ ++.+.+.+. +++.+++.++
T Consensus 84 g~~~al~~~~~~~----~gd~vl~~~p~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~-l~~~~~~~~---~~~~~v~i~~ 154 (364)
T 1lc5_A 84 GETESIFTVASGL----KPRRAMIVTPGFAEYGRALAQSGC-EIRRWSLREADGWQL-TDAILEALT---PDLDCLFLCT 154 (364)
T ss_dssp SHHHHHHHHHHHH----CCSEEEEEESCCTHHHHHHHHTTC-EEEEEECCGGGTTCC-CTTHHHHCC---TTCCEEEEES
T ss_pred CHHHHHHHHHHHc----CCCeEEEeCCCcHHHHHHHHHcCC-eEEEEeCCcccccch-hHHHHHhcc---CCCCEEEEeC
Confidence 9999999988765 689999999999999999999999 899888732122222 344444442 3334445578
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|.++.++
T Consensus 155 p~nptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~~ 194 (364)
T 1lc5_A 155 PNNPTGLLPERPLLQAIADRCKSLNINLILD--EAFIDFIPH 194 (364)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTGGGSTT
T ss_pred CCCCCCCCCCHHHHHHHHHHhhhcCcEEEEE--CcChhhccC
Confidence 9999996 6889999999999999 999987653
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.1e-19 Score=152.38 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=126.1
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
...+|+|+.+. + .+++++.|++|..+.... .++| |..|.++||+++++++ + .++++| +.|.|
T Consensus 15 ~~~~i~l~~n~----~-~~~~~~~v~~a~~~~~~~---~~~y-~~~~~~~lr~~la~~~-~------~~~~~i--~~t~G 76 (337)
T 3p1t_A 15 AAQAVCLAFNE----N-PEAVEPRVQAAIAAAAAR---INRY-PFDAEPRVMRKLAEHF-S------CPEDNL--MLVRG 76 (337)
T ss_dssp CCCCEECSSCC----C-CSCCCHHHHHHHHHHGGG---TTSC-CTTHHHHHHHHHHHHH-T------SCGGGE--EEESH
T ss_pred CCCceEeeCCC----C-CCCCCHHHHHHHHHhhhh---hccC-CCCchHHHHHHHHHHh-C------cCHHHE--EEeCC
Confidence 44689999884 2 355788999998877643 5678 5689999999999987 3 334555 59999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+++++.++++++ +||+|++++|+|++|...++..|+ +++.++.. +.+.+|++.+++. .++.+++.++|
T Consensus 77 ~~~~l~~~~~~~----~gd~vl~~~p~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~-----~~~~~v~i~~p 144 (337)
T 3p1t_A 77 IDECFDRISAEF----SSMRFVTAWPGFDGYRARIAVSGL-RHFEIGLT--DDLLLDPNDLAQV-----SRDDCVVLANP 144 (337)
T ss_dssp HHHHHHHHHHHS----TTSEEEEESSSCSHHHHHHTTSCC-EEEEECBC--TTSSBCHHHHTTC-----CTTEEEEEESS
T ss_pred HHHHHHHHHHhc----CCCeEEEeCCCcHHHHHHHHHcCC-EEEEecCC--CCCCCCHHHHHhh-----cCCCEEEEeCC
Confidence 999999887754 899999999999999999999999 89998873 3467888776542 23456667899
Q ss_pred CCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. ++.+++++++++|+ | ++|.++.+.
T Consensus 145 ~nptG~~~~~~~l~~l~~~~~~~iv-D--ea~~~~~~~ 179 (337)
T 3p1t_A 145 SNPTGQALSAGELDQLRQRAGKLLI-D--ETYVDYSSF 179 (337)
T ss_dssp CTTTCCCCCHHHHHHHHHHCSEEEE-E--CTTGGGSSC
T ss_pred CCCCCCCCCHHHHHHHHHhCCcEEE-E--CCChhhccc
Confidence 999997 78999999998555 9 899876544
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=2.4e-20 Score=170.12 Aligned_cols=171 Identities=11% Similarity=-0.002 Sum_probs=124.8
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCC-CCC---CcCCCceEEEEec
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGD-ASP---PLREGRAFGVQTL 84 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~-~~~---~~~~~~v~~~~t~ 84 (218)
+|+|++|.+ + + +++.+.+++.+... ..+|.+..|.++||++++++++. . .+. ...+++| ++|.
T Consensus 106 ~i~l~~g~~----~-~-~~~~~~~al~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~~~~~~I--~~t~ 172 (546)
T 2zy4_A 106 SLSYVRDQL----G-L-DPAAFLHEMVDGIL----GCNYPVPPRMLNISEKIVRQYII-REMGADAIPSESVNL--FAVE 172 (546)
T ss_dssp HHHHHHHTS----C-C-CHHHHHHHHHHHHH----TCSCCSSSSCCHHHHHHHHHHHH-HHTTCTTSCGGGEEE--EEEE
T ss_pred hhecccCCC----C-C-CChHHHHHHHHhhh----cCCCCCCcCCHHHHHHHHHHHHH-HhccCCCCCCCcceE--EEEC
Confidence 789999952 2 3 34455555544442 25799999999999998887642 2 111 1134554 6999
Q ss_pred cChhHHHHHHHHHH---HhcCCCeEEecCCCchhHHHHHHHh--CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEE
Q psy6266 85 SGTGALRVGAEFLH---RILNYTTFYYSKPTWENHRLVFLNA--GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 85 G~~~al~~~~~~l~---~l~~gd~V~i~~P~y~~y~~~~~~~--g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
|+++++.++++++. .++|||+|++++|+|+.|....... |+ +++.+++...+.+.+|++.+++.+. ++..+
T Consensus 173 G~~eal~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~---~~~k~ 248 (546)
T 2zy4_A 173 GGTAAMAYIFESLKLNGLLKAGDKVAIGMPVFTPYIEIPELAQYAL-EEVAINADPSLNWQYPDSELDKLKD---PAIKI 248 (546)
T ss_dssp HHHHHHHHHHHHHHHTTSSCTTCEEEEEESCCHHHHHHHHSTTSCC-EEEEEECBGGGTTBCCHHHHGGGGS---TTEEE
T ss_pred CHHHHHHHHHHHhhhhhcCCCCCEEEEeCCCCccHHHHHHHcCCCc-EEEEEecCcccCCCCCHHHHHHhhC---CCCeE
Confidence 99999999988742 1579999999999999999876655 56 7888887544446689888876552 34444
Q ss_pred EEcccCCCCcHH--------HHHHHh--hcCeEEEeeCCceeeccCCCC
Q psy6266 160 ILHACAHNPTAQ--------QVAHMV--DKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 160 il~~~p~NPTG~--------~l~~l~--~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++.++||||||. +|.++| ++++++||+| ++|.++.++
T Consensus 249 v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~D--e~y~~~~~~ 295 (546)
T 2zy4_A 249 FFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTD--DVYGTFADD 295 (546)
T ss_dssp EEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEE--CTTGGGSTT
T ss_pred EEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEe--Ccchhhccc
Confidence 555689999997 678888 7899999999 999988753
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.80 E-value=7e-21 Score=167.99 Aligned_cols=177 Identities=15% Similarity=0.031 Sum_probs=127.3
Q ss_pred Ccee-eeeeeEEeCCCCCccCchHHHHHHHHHhhc-------CC---CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC
Q psy6266 7 EIHC-CEIRNAYRTEECKPWVLPVVRQAEKELAAD-------DS---LNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75 (218)
Q Consensus 7 ~~~i-~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-------~~---~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~ 75 (218)
.++| ||+.|.+ +..+++.+.++++..+.... .. ....|.+..|.++||+++++++.. ..+....+
T Consensus 31 ~~~i~~l~~g~p---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~-~~g~~~~~ 106 (444)
T 3if2_A 31 DQPVNMLGGGNP---AKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNR-HYDWNLTS 106 (444)
T ss_dssp SSCCEECSCCCC---CCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHH-HHCCCCCG
T ss_pred chhhhccCCCCC---CcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHh-hcCCCCCH
Confidence 5789 9999963 33233335666666665531 00 025799999999999999999854 33333566
Q ss_pred CceEEEEeccChhHHHHHHHHHHHhcCCC--------------eEEec-CCCchhHHHH------HHHhCCCcceeEecc
Q psy6266 76 GRAFGVQTLSGTGALRVGAEFLHRILNYT--------------TFYYS-KPTWENHRLV------FLNAGFTEAREYRYW 134 (218)
Q Consensus 76 ~~v~~~~t~G~~~al~~~~~~l~~l~~gd--------------~V~i~-~P~y~~y~~~------~~~~g~~~~~~~~~~ 134 (218)
++| ++|.|+++|+.++++++ +.+|| +|+++ +|+|+.|... +...|. .++.++..
T Consensus 107 ~~i--~~t~G~t~al~~~~~~l--~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 181 (444)
T 3if2_A 107 ENI--ALTNGSQNAFFYLFNLF--GGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP-HIDEVTHD 181 (444)
T ss_dssp GGE--EEESSHHHHHHHHHHHS--SEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC-EEEEEEET
T ss_pred HHE--EEecCcHHHHHHHHHHH--hCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc-eEEecccc
Confidence 775 59999999999998876 67888 88887 9999999863 344555 56666653
Q ss_pred CCc---CccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeecc
Q psy6266 135 NPE---KRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 135 ~~~---~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
.++ .+.+|++.++++|++..+++.+++.++||||||. +|.++|++|++++|.| ++|..
T Consensus 182 ~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~D--e~~~~ 250 (444)
T 3if2_A 182 GEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIID--NAYGM 250 (444)
T ss_dssp TEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEE--CTTCT
T ss_pred cccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEE--CCCCC
Confidence 111 2467999998875322345666666789999996 6888999999999999 88874
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=154.63 Aligned_cols=171 Identities=7% Similarity=-0.063 Sum_probs=132.7
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|..+|||+.|.+ ..+++++.+++|..+.++. ......|.+..|.+++++++++++.. ..+ .++ +++|
T Consensus 41 ~g~~~idl~~~~~----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~-~~g----~~~--v~~~ 109 (398)
T 3a2b_A 41 DGRRVLMFGSNSY----LGLTTDTRIIKAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSA-YVG----KEA--AILF 109 (398)
T ss_dssp TTEEEEECSCSCT----TCGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHH-HHT----CSE--EEEE
T ss_pred CCceEEEeecccc----cCCCCCHHHHHHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHH-HhC----CCc--EEEE
Confidence 5678899999952 1244678888887776643 11223466788998999988888744 222 134 4699
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCC-CcEEEEc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD-NSVIILH 162 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~~~iil~ 162 (218)
.|+++|+.++++++ ++|||+|++++|+|+.|...++..|+ +++.++. +|++.+++.+++..+ ++.+++.
T Consensus 110 ~ggt~a~~~~~~~~--~~~gd~V~~~~p~~~~~~~~~~~~g~-~~~~v~~-------~d~~~l~~~l~~~~~~~~~~v~~ 179 (398)
T 3a2b_A 110 STGFQSNLGPLSCL--MGRNDYILLDERDHASIIDGSRLSFS-KVIKYGH-------NNMEDLRAKLSRLPEDSAKLICT 179 (398)
T ss_dssp SSHHHHHHHHHHHS--SCTTCEEEEETTCCHHHHHHHHHSSS-EEEEECT-------TCHHHHHHHHHTSCSSSCEEEEE
T ss_pred CCHHHHHHHHHHHH--hCCCCEEEECCccCHHHHHHHHHcCC-ceEEeCC-------CCHHHHHHHHHhhccCCceEEEE
Confidence 99999999998876 67999999999999999999999999 8888864 477888888875321 4566667
Q ss_pred ccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 163 ACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 163 ~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++||||||. +|.++|++|++++|.| ++|..+.++
T Consensus 180 ~~~~nptG~~~~~~~l~~~~~~~~~~li~D--e~~~~~~~~ 218 (398)
T 3a2b_A 180 DGIFSMEGDIVNLPELTSIANEFDAAVMVD--DAHSLGVIG 218 (398)
T ss_dssp ESBCTTTCCBCCHHHHHHHHHHHTCEEEEE--CTTTTTTSS
T ss_pred eCCCCCCCCccCHHHHHHHHHHcCcEEEEE--CCCcccccC
Confidence 889999997 8999999999999999 999877654
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=5.4e-19 Score=152.12 Aligned_cols=153 Identities=12% Similarity=0.138 Sum_probs=118.7
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+|||+.|.. + +.+++.+ .. + ...+|.+. +.++||+++++++ + .++++| ++|.|++
T Consensus 30 ~~i~l~~~~~--~---~~~~~~v------a~-~--~~~~Y~~~-~~~~lr~~la~~~-~------~~~~~v--~~~~G~~ 85 (356)
T 1fg7_A 30 GDVWLNANEY--P---TAVEFQL------TQ-Q--TLNRYPEC-QPKAVIENYAQYA-G------VKPEQV--LVSRGAD 85 (356)
T ss_dssp CSEECSSCCC--S---SCCCCCC------CC-C--CTTSCCCS-SCHHHHHHHHHHH-T------SCGGGE--EEESHHH
T ss_pred ceEEeeCCCC--C---CCCCHhH------hh-h--hhccCCCc-cHHHHHHHHHHHh-C------CChHHE--EEcCCHH
Confidence 5799999962 2 2334444 12 1 35679765 6999999999988 3 334565 5999999
Q ss_pred hHHHHHHHHHHHhcCC-CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 88 GALRVGAEFLHRILNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 88 ~al~~~~~~l~~l~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
+++.++++++ ++|| |+|++++|+|+.|...++..|+ +++.++.. +.+.+|++.+++.+. ++.+++.++||
T Consensus 86 ~ai~~~~~~~--~~~g~d~Vl~~~p~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~i~----~~~~v~l~~p~ 156 (356)
T 1fg7_A 86 EGIELLIRAF--CEPGKDAILYCPPTYGMYSVSAETIGV-ECRTVPTL--DNWQLDLQGISDKLD----GVKVVYVCSPN 156 (356)
T ss_dssp HHHHHHHHHH--CCTTTCEEEECSSSCTHHHHHHHHHTC-EEEECCCC--TTSCCCHHHHHTSCT----TEEEEEEESSC
T ss_pred HHHHHHHHHH--hCCCCCEEEEeCCChHHHHHHHHHcCC-EEEEeeCC--CCCCCCHHHHHHHhc----CCCEEEEeCCC
Confidence 9999998877 6789 9999999999999999999999 88888773 346788888877663 34455557899
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
||||. ++.++|+ +++++|.| ++|.++.
T Consensus 157 nptG~~~~~~~l~~l~~~~~-~~~~li~D--e~~~~~~ 191 (356)
T 1fg7_A 157 NPTGQLINPQDFRTLLELTR-GKAIVVAD--EAYIEFC 191 (356)
T ss_dssp TTTCCCCCHHHHHHHHHHHT-TTCEEEEE--CTTGGGS
T ss_pred CCCCCCCCHHHHHHHHHhCC-CCCEEEEE--ccchhhc
Confidence 99996 4666666 99999999 9999875
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-18 Score=147.17 Aligned_cols=158 Identities=11% Similarity=0.011 Sum_probs=116.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|+.+|||+.|. ..+++++.|++|..+... ...+|.+..| ++||+++++++ + .++++| ++|
T Consensus 12 ~~g~~~id~~~~~-----~~~~~~~~v~~a~~~~~~---~~~~y~~~~~-~~lr~~la~~~-~------~~~~~i--~~t 73 (350)
T 3fkd_A 12 PLSSEIVNFSTTV-----WTDGDKDHLEKHLVENLN---CIRHYPEPDA-GTLRQMLAKRN-S------VDNNAI--LVT 73 (350)
T ss_dssp ----CCEECSCCS-----CCCSCCHHHHHHHHHTGG---GGGSCCCTTC-HHHHHHHHHHT-T------CCGGGE--EEE
T ss_pred hccccEEEccCCC-----CCCCCCHHHHHHHHHhHh---HHhcCCCCcH-HHHHHHHHHHh-C------cCHHHE--EEc
Confidence 4578899999994 234578899988877663 3567888877 99999999986 3 344565 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ . ||+|++++|+|+.|...++..|+ +++.++.... ..+++. +++.+++.+
T Consensus 74 ~g~~~al~~~~~~l--~--gd~Vi~~~p~~~~~~~~~~~~g~-~~~~v~~~~~-~~~~~~-----------~~~~~v~i~ 136 (350)
T 3fkd_A 74 NGPTAAFYQIAQAF--R--GSRSLIAIPSFAEYEDACRMYEH-EVCFYPSNED-IGEADF-----------SNMDFCWLC 136 (350)
T ss_dssp SHHHHHHHHHHHHT--T--TCEEEEEESCCHHHHHHHHHTTC-EEEEEETTSC-GGGSCC-----------TTCSEEEEE
T ss_pred CCHHHHHHHHHHHH--C--CCEEEEeCCCcHHHHHHHHHcCC-eEEEEecCCc-cccCcc-----------CCCCEEEEe
Confidence 99999999998876 3 99999999999999999999999 8999987322 123333 223334447
Q ss_pred cCCCCcHH-----HHHHHhhcCe-EEEeeCCceeeccCCCC
Q psy6266 164 CAHNPTAQ-----QVAHMVDKHH-VYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 164 ~p~NPTG~-----~l~~l~~~~~-i~ii~D~r~~y~~l~~~ 198 (218)
+||||||. ++.++++.++ .++|.| ++|.++.++
T Consensus 137 ~p~nptG~~~~~~~l~~l~~~~~~~~li~D--ea~~~~~~~ 175 (350)
T 3fkd_A 137 NPNNPDGRLLQRTEILRLLNDHPDTTFVLD--QSYVSFTTE 175 (350)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHCTTSEEEEE--CTTTTSCSS
T ss_pred CCCCCcCCCCCHHHHHHHHHhCCCCEEEEE--CchhhhccC
Confidence 89999997 5555555433 499999 999987765
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.4e-18 Score=146.64 Aligned_cols=170 Identities=11% Similarity=-0.058 Sum_probs=125.6
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-------CCccCcCCCCcHHHHHH-HHHHhcCCCCCCCcCCCce
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-------LNHEYLPVLGLESFSSA-ATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~~Y~~~~G~~~lr~a-ia~~~~~~~~~~~~~~~~v 78 (218)
...|+|..|. .. .++++.|.+|..+...... ....|.+..+.++||++ +++++.. + +
T Consensus 7 ~~~i~ld~~~---~~--~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~-------~--~- 71 (371)
T 2e7j_A 7 KDFINIDPLQ---TG--GKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC-------D--V- 71 (371)
T ss_dssp -CCEECCHHH---HT--CCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTS-------S--E-
T ss_pred CCcEEecccc---cC--CCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCC-------C--E-
Confidence 3577887764 12 3568899998877654310 12246678999999999 9987632 1 3
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC--CC
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP--DN 156 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~--~~ 156 (218)
+++|.|+++|+.++++++ +.|||+|++++|+|+++...++..|+ +++.++....+.+.+|++.+++.+.+.. ++
T Consensus 72 -v~~~~g~t~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~ 147 (371)
T 2e7j_A 72 -ARVTNGAREAKFAVMHSL--AKKDAWVVMDENCHYSSYVAAERAGL-NIALVPKTDYPDYAITPENFAQTIEETKKRGE 147 (371)
T ss_dssp -EEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTTC-EEEEECCCCTTTCCCCHHHHHHHHHHHTTTSC
T ss_pred -EEEeCChHHHHHHHHHHH--hCCCCEEEEccCcchHHHHHHHHcCC-eEEEeecccCCCCCcCHHHHHHHHHhhcccCC
Confidence 468999999999999887 67999999999999999999999999 8999882112346789999999886321 34
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+.+++.++||||||. +|.++|++|++++|.| ++|.....
T Consensus 148 ~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D--~a~~~~~~ 191 (371)
T 2e7j_A 148 VVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVN--GAYAIGRM 191 (371)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEE--CTTTBTTB
T ss_pred eEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEE--CccccCCC
Confidence 556777899999997 8999999999999999 89887654
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=145.16 Aligned_cols=169 Identities=11% Similarity=0.033 Sum_probs=129.9
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-----CCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-----LNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-----~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
|..+|+|+.|.+ + +.++.|.+|..+..+... ..+.|.+ ..|.++||+++++++.. . +++++
T Consensus 26 g~~~i~l~~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~-~-----~~~~v 93 (420)
T 1t3i_A 26 GHPLVYLDNAAT----S--QKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINA-R-----SPREI 93 (420)
T ss_dssp TEECEECBTTTC----C--CCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTC-S-----CGGGE
T ss_pred CCceEEecCCcc----C--CCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHHHHcCC-C-----CCCeE
Confidence 566899999952 2 457888888777664311 1345665 57899999999998732 1 33554
Q ss_pred EEEEeccChhHHHHHHHHHH--HhcCCCeEEecCCCchh----HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhc
Q psy6266 79 FGVQTLSGTGALRVGAEFLH--RILNYTTFYYSKPTWEN----HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~--~l~~gd~V~i~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 152 (218)
+.|.|+++|+.++++++. .+.+||+|++++|+|++ |...++..|+ +++.++.. +.+.+|++.+++.+.
T Consensus 94 --~~~~g~t~a~~~~~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~l~- 167 (420)
T 1t3i_A 94 --VYTRNATEAINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGA-VLKFVQLD--EQESFDLEHFKTLLS- 167 (420)
T ss_dssp --EEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCC-EEEEECBC--TTSSBCHHHHHHHCC-
T ss_pred --EEcCChHHHHHHHHHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCc-EEEEeccC--CCCCcCHHHHHHhhC-
Confidence 589999999999988762 15789999999999999 6677778899 89988873 345689999998885
Q ss_pred CCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 153 APDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+++.+++.++|+||||. +|.++|+++++++|.| ++|....
T Consensus 168 --~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D--~a~~~~~ 212 (420)
T 1t3i_A 168 --EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVD--ACQSAPH 212 (420)
T ss_dssp --TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE--CTTTTTT
T ss_pred --CCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEE--hhhccCC
Confidence 34556666889999997 8999999999999999 8887543
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-18 Score=143.56 Aligned_cols=157 Identities=10% Similarity=0.032 Sum_probs=118.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
..|||+.|.+ .+++++.|.+|..+...+ ...++|.. .|.++||+++++++.. . ..++++| ++|.|++
T Consensus 20 ~~i~l~~~~~-----~~~~~~~v~~a~~~~~~~-~~~~~y~~-~~~~~lr~~la~~~~~-~---~~~~~~v--~~~~G~~ 86 (335)
T 1uu1_A 20 DKTYLALNEN-----PFPFPEDLVDEVFRRLNS-DALRIYYD-SPDEELIEKILSYLDT-D---FLSKNNV--SVGNGAD 86 (335)
T ss_dssp CSEEESSCCC-----SSCCCHHHHHHHHHTCCG-GGGGSCCC-SSCHHHHHHHHHHHTC-S---SCCGGGE--EEESSHH
T ss_pred cceECCCCCC-----CCCCCHHHHHHHHHHhhh-hhhhcCCC-CchHHHHHHHHHHcCC-C---CCCHHHE--EEcCChH
Confidence 5789999952 245688999988776522 23456754 5899999999999864 3 2445665 5999999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++.++++++ ||+|+++ |+|+.|...++..|+ +++.++.. +.+.+|++.+ +++.+++.++|||
T Consensus 87 ~al~~~~~~~-----gd~Vl~~-p~y~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l--------~~~~~v~l~~p~n 149 (335)
T 1uu1_A 87 EIIYVMMLMF-----DRSVFFP-PTYSCYRIFAKAVGA-KFLEVPLT--KDLRIPEVNV--------GEGDVVFIPNPNN 149 (335)
T ss_dssp HHHHHHHHHS-----SEEEECS-SSCHHHHHHHHHHTC-EEEECCCC--TTSCCCCCCC--------CTTEEEEEESSCT
T ss_pred HHHHHHHHHh-----CCcEEEC-CCcHHHHHHHHHcCC-eEEEeccC--CCCCCCHHHc--------CCCCEEEEeCCCC
Confidence 9999987753 8999999 999999999999999 88888762 2345665554 2334454478999
Q ss_pred CcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 168 PTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 168 PTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
|||. ++.++++..+ ++|.| ++|.++.+
T Consensus 150 ptG~~~~~~~l~~l~~~~~-~li~D--e~~~~~~~ 181 (335)
T 1uu1_A 150 PTGHVFEREEIERILKTGA-FVALD--EAYYEFHG 181 (335)
T ss_dssp TTCCCCCHHHHHHHHHTTC-EEEEE--CTTHHHHC
T ss_pred CCCCCCCHHHHHHHHHhCC-EEEEE--Ccchhhcc
Confidence 9997 6778887778 89999 99987644
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-17 Score=140.85 Aligned_cols=166 Identities=9% Similarity=-0.031 Sum_probs=125.3
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CC--CCccC--cCCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DS--LNHEY--LPVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~--~~~~Y--~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.|...|||+.|.+ ..+++++.+++|..+.++. .. ....| ....+..+||+++++++ + .+ + .
T Consensus 37 ~g~~~id~~~~~~----~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g------~~-~-~- 102 (384)
T 1bs0_A 37 DDRQYLNFSSNDY----LGLSHHPQIIRAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWL-G------YS-R-A- 102 (384)
T ss_dssp TTEEEEECSCCCT----TSGGGCHHHHHHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHH-T------CS-E-E-
T ss_pred CCceEEEeeccCc----cCCCCCHHHHHHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHh-C------CC-c-E-
Confidence 4778899999842 2235678888887776543 11 01223 45678999999999987 4 21 2 2
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEE
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
++++.| ++++..+++++ +++||.|++++|+|+.+...++..|+ +++.+|. .|++.+++.+++..+++.+
T Consensus 103 i~~~sG-t~a~~~~~~~~--~~~gd~v~~~~~~~~~~~~~~~~~g~-~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 171 (384)
T 1bs0_A 103 LLFISG-FAANQAVIAAM--MAKEDRIAADRLSHASLLEAASLSPS-QLRRFAH-------NDVTHLARLLASPCPGQQM 171 (384)
T ss_dssp EEESCH-HHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTSSS-EEEEECT-------TCHHHHHHHHHSCCSSCEE
T ss_pred EEeCCc-HHHHHHHHHHh--CCCCcEEEEcccccHHHHHHHHHcCC-CEEEeCC-------CCHHHHHHHHHhcCCCCeE
Confidence 345555 89999888776 67999999999999999999999998 8888753 3678888888754333566
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
++.++||||||. +|.++|++|++++|.| ++|....+
T Consensus 172 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D--e~~~~~~~ 212 (384)
T 1bs0_A 172 VVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVD--DAHGTGVI 212 (384)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE--CTTTTTTS
T ss_pred EEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEE--CCccccee
Confidence 777889999997 8999999999999999 99975543
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=146.32 Aligned_cols=158 Identities=12% Similarity=0.050 Sum_probs=118.0
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhh---cCCCCccCcCCCCcH---HHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAA---DDSLNHEYLPVLGLE---SFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~---~~~~~~~Y~~~~G~~---~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..++++|. +++.+++.+.++..+..+ .....+.|+. .|.+ +||+++++++.. ++ .++
T Consensus 20 ~~~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~-~~~~~~~~l~~~ia~~~g~---------~~--~i~ 82 (404)
T 1e5e_A 20 DQFGAAIP-----PIYQTSTFVFDNCQQGGNRFAGQESGYIYTR-LGNPTVSNLEGKIAFLEKT---------EA--CVA 82 (404)
T ss_dssp CTTCCSSC-----CCCCCSBCCCSSHHHHHHHHTTSSCSCCBTT-TCCHHHHHHHHHHHHHHTC---------SE--EEE
T ss_pred CCCCCcCC-----CCcCCCccccCCHHHHHHhhcCCcCCccccC-CcChHHHHHHHHHHHHhCC---------Cc--EEE
Confidence 35688884 233444444443333221 1123567988 7888 999999998732 12 357
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH----HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcE
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL----VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSV 158 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~----~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 158 (218)
+.||++|+.++++++ ++|||+|++++|+|+++.. .++..|+ +++.++.. |++.+++.+. +++.
T Consensus 83 ~~~g~~ai~~~~~~l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~-~~~~v~~~-------d~~~l~~~i~---~~t~ 149 (404)
T 1e5e_A 83 TSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFEHALTKFGI-QVDFINTA-------IPGEVKKHMK---PNTK 149 (404)
T ss_dssp ESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC-EEEEECTT-------STTHHHHHCC---TTEE
T ss_pred eCChHHHHHHHHHHH--hCCCCEEEEeCCCchhHHHHHHHHHHHcCC-EEEEECCC-------CHHHHHHhcC---CCCc
Confidence 888899999988876 6899999999999999988 7888898 88888652 5677777774 3456
Q ss_pred EEEcccCCCCcHH-----HHHHHhhc-CeEEEeeCCceeeccCCCC
Q psy6266 159 IILHACAHNPTAQ-----QVAHMVDK-HHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 159 iil~~~p~NPTG~-----~l~~l~~~-~~i~ii~D~r~~y~~l~~~ 198 (218)
+++.++||||||. +|.++|++ +++++|.| ++|..+.+.
T Consensus 150 ~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~D--e~~~~~~~~ 193 (404)
T 1e5e_A 150 IVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD--NTFCSPMIT 193 (404)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEE--CTTTCTTTC
T ss_pred EEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEE--CCCchhhhC
Confidence 6666899999997 89999999 99999999 999987654
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2.6e-17 Score=141.32 Aligned_cols=154 Identities=12% Similarity=0.057 Sum_probs=117.6
Q ss_pred CccCchHHHHHHHHHhhcCC-C---Cc--cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHH
Q psy6266 23 KPWVLPVVRQAEKELAADDS-L---NH--EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEF 96 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~-~---~~--~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~ 96 (218)
..++++.|++|..+...+.. . .+ .|.+..|.++||+++++++ + .++++| ++|.|+++|+.+++++
T Consensus 10 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g------~~~~~v--~~~~g~t~a~~~~~~~ 80 (384)
T 1eg5_A 10 TTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL-G------VSPSEI--FFTSCATESINWILKT 80 (384)
T ss_dssp CCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-T------SCGGGE--EEESCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHHHHHc-C------CCCCeE--EEECCHHHHHHHHHHh
Confidence 34778999999877664310 0 11 2445678899999999987 3 234554 5999999999999987
Q ss_pred HHH--hcCCCeEEecCCCchhHHHHH---HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH
Q psy6266 97 LHR--ILNYTTFYYSKPTWENHRLVF---LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ 171 (218)
Q Consensus 97 l~~--l~~gd~V~i~~P~y~~y~~~~---~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~ 171 (218)
+.. +++||+|++++|+|+++...+ +..|+ +++.++.. +.+.+|++.+++.+.+ ++.+++.++|+||||.
T Consensus 81 ~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~i~~---~~~~v~~~~~~nptG~ 154 (384)
T 1eg5_A 81 VAETFEKRKRTIITTPIEHKAVLETMKYLSMKGF-KVKYVPVD--SRGVVKLEELEKLVDE---DTFLVSIMAANNEVGT 154 (384)
T ss_dssp HHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTC-EEEECCBC--TTSCBCHHHHHHHCCT---TEEEEEEESBCTTTCB
T ss_pred hhhhccCCCCEEEECCCCchHHHHHHHHHHhcCC-EEEEEccC--CCCccCHHHHHHHhCC---CCeEEEEECCCCCccc
Confidence 731 168999999999999986655 67788 88888773 2456899999988853 4455555789999997
Q ss_pred -----HHHHHhhcCe--EEEeeCCceeec
Q psy6266 172 -----QVAHMVDKHH--VYLLRSGRINMC 193 (218)
Q Consensus 172 -----~l~~l~~~~~--i~ii~D~r~~y~ 193 (218)
+|.++|++++ +++|.| ++|.
T Consensus 155 ~~~~~~i~~l~~~~~~~~~li~D--ea~~ 181 (384)
T 1eg5_A 155 IQPVEDVTRIVKKKNKETLVHVD--AVQT 181 (384)
T ss_dssp BCCHHHHHHHHHHHCTTCEEEEE--CTTT
T ss_pred ccCHHHHHHHHHhcCCceEEEEE--hhhh
Confidence 8999999999 999999 8875
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.3e-17 Score=141.03 Aligned_cols=162 Identities=7% Similarity=-0.097 Sum_probs=117.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCC--Ccc--CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSL--NHE--YLPVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~--~~~--Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.|..+|||+.|. +-| +.+++.+.++..+.+++ ... ..+ |....+.++||+++++++.. + +.
T Consensus 41 ~g~~~id~~~~~---~~g-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~-------~-~~-- 106 (399)
T 3tqx_A 41 GEKEVLNFCANN---YLG-LADHPALIKTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGT-------D-DT-- 106 (399)
T ss_dssp TTEEEEECSSCC---TTS-CTTCHHHHHHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTC-------S-EE--
T ss_pred CCeeEEEeeccC---ccc-ccCCHHHHHHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCC-------C-cE--
Confidence 467889999994 333 34578888887766543 100 111 22344579999999988732 1 22
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC---CC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP---DN 156 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~ 156 (218)
+++|.| ++|+.+++.++ ++|||+|++++|+|+.+...++..|+ +++.++. .|++.+++.+++.. .+
T Consensus 107 i~~~sG-t~a~~~~l~~~--~~~gd~v~~~~~~~~~~~~~~~~~g~-~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 175 (399)
T 3tqx_A 107 ILYSSC-FDANGGLFETL--LGPEDAIISDELNHASIIDGIRLCKA-QRYRYKN-------NAMGDLEAKLKEADEKGAR 175 (399)
T ss_dssp EEESCH-HHHHHTTHHHH--CCTTCEEEEETTCCHHHHHHHHSCCS-EEEEECT-------TCTTHHHHHHHHHHTTTCS
T ss_pred EEECch-HHHHHHHHHHh--cCCCCEEEECCcccHHHHHHHHHcCC-ceeEeCC-------CCHHHHHHHHHhhhccCCC
Confidence 235554 77888877766 68999999999999999999999998 8888865 24556666665421 15
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.+++.++||||||. +|.++|++|++++|.| ++|.
T Consensus 176 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D--e~~~ 215 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIADLKSICDLADKYNALVMVD--DSHA 215 (399)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE--CTTT
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEE--CCcc
Confidence 666767789999997 8999999999999999 9995
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=136.33 Aligned_cols=157 Identities=11% Similarity=-0.022 Sum_probs=117.8
Q ss_pred CCCCCccCchHHHHHHHHHhhcC-CCCc-cCcC----CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHH
Q psy6266 19 TEECKPWVLPVVRQAEKELAADD-SLNH-EYLP----VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRV 92 (218)
Q Consensus 19 ~~~~~~~~~~~v~~a~~~~~~~~-~~~~-~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~ 92 (218)
|..+..++++.|++|+.+.+.+. ...+ .|.. ..+..+||+++++++ + .+++++ +.|.|+++|+.+
T Consensus 5 d~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g------~~~~~v--~~~~g~t~a~~~ 75 (382)
T 4eb5_A 5 DYTSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV-N------GGGGTV--VFTSGATEANNL 75 (382)
T ss_dssp BTTTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-T------CTTEEE--EEESSHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHHHHHHHHHh-C------CCCCeE--EEcCchHHHHHH
Confidence 34444578999999987766431 1111 2543 246788999999876 3 223444 689999999999
Q ss_pred HHHHHHH--hcCCCeEEecCCCchhHHHHHHH---hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 93 GAEFLHR--ILNYTTFYYSKPTWENHRLVFLN---AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 93 ~~~~l~~--l~~gd~V~i~~P~y~~y~~~~~~---~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++++.. ..|||+|++++|+|+++...+.. .|+ +++.++.. . .+.+|++.+++.+. +++.+++.++|+|
T Consensus 76 ~~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~i~---~~~~~v~~~~~~n 149 (382)
T 4eb5_A 76 AIIGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGF-EVEYIPVG-K-YGEVDVSFIDQKLR---DDTILVSVQHANN 149 (382)
T ss_dssp HHHHHHHHHGGGCCEEEEETTCCHHHHHHHHHHTTTTC-EEEEECBC-T-TSCBCHHHHHHHCC---TTEEEEECCSBCT
T ss_pred HHHHHHhhccCCCCEEEECCCcchHHHHHHHHHHhCCc-EEEEeccC-C-CCccCHHHHHHHhc---CCCeEEEEeccCC
Confidence 9987731 16899999999999998776654 588 88888873 2 45689999998885 3456677789999
Q ss_pred CcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 168 PTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 168 PTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
|||. +|.++|++|+++ |.| ++|.
T Consensus 150 ptG~~~~l~~i~~l~~~~~~~-i~D--~a~~ 177 (382)
T 4eb5_A 150 EIGTIQPVEEISEVLAGKAAL-HID--ATAS 177 (382)
T ss_dssp TTCBBCCHHHHHHHHTTSSEE-EEE--CTTT
T ss_pred CccccCCHHHHHHHHHHCCCE-EEE--cchh
Confidence 9997 899999999999 999 8876
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6e-17 Score=137.93 Aligned_cols=157 Identities=10% Similarity=-0.006 Sum_probs=115.6
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+|+|+.+.. +.+++.+++++.+... ....|.+..|.++||+++++++.. ++ .++|.||+
T Consensus 4 ~~i~~~~~~~------~~p~~~~~~a~~~~~~---~~~~y~~~~~~~~l~~~la~~~g~---------~~--~~~~~~gt 63 (347)
T 1jg8_A 4 MMIDLRSDTV------TKPTEEMRKAMAQAEV---GDDVYGEDPTINELERLAAETFGK---------EA--ALFVPSGT 63 (347)
T ss_dssp -CEECSCGGG------CCCCHHHHHHHHTCCC---CCGGGTCCHHHHHHHHHHHHHHTC---------SE--EEEESCHH
T ss_pred eEEEeccccC------CCCCHHHHHHHhcCCC---CCcccCCChHHHHHHHHHHHHhCC---------ce--EEEecCcH
Confidence 4678888852 2356788887755431 234688889999999999998732 12 24777888
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchh-HH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEE
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWEN-HR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIIL 161 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~-y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil 161 (218)
+|+.++++++ ++|||+|++++|+|+. |. .+++..|+ +++.+ . .+.+.+|++.+++.+++. .+++.+++
T Consensus 64 ~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~v-~--~~~~~~d~~~l~~~i~~~~~~~~~~~~v~ 137 (347)
T 1jg8_A 64 MGNQVSIMAH--TQRGDEVILEADSHIFWYEVGAMAVLSGV-MPHPV-P--GKNGAMDPDDVRKAIRPRNIHFPRTSLIA 137 (347)
T ss_dssp HHHHHHHHHH--CCTTCEEEEETTCHHHHSSTTHHHHHTCC-EEEEE-C--EETTEECHHHHHHHSCCSCTTSCCEEEEE
T ss_pred HHHHHHHHHh--cCCCCEEEEcCcchhhhccccchhhccCe-EEEEe-c--CCCCccCHHHHHHHhccccccccCceEEE
Confidence 8888887765 6899999999999975 43 35677898 88777 3 233457999999888641 12456666
Q ss_pred cccCCCCc-HH--------HHHHHhhcCeEEEeeCCceee
Q psy6266 162 HACAHNPT-AQ--------QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 162 ~~~p~NPT-G~--------~l~~l~~~~~i~ii~D~r~~y 192 (218)
.++||||| |. +|.++|++|+++++.| ++|
T Consensus 138 ~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D--~a~ 175 (347)
T 1jg8_A 138 IENTHNRSGGRVVPLENIKEICTIAKEHGINVHID--GAR 175 (347)
T ss_dssp EESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEE--ETT
T ss_pred EeccccccCCccCcHHHHHHHHHHHHHCCCEEEee--hhh
Confidence 68999999 75 6789999999999999 654
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-16 Score=136.38 Aligned_cols=158 Identities=11% Similarity=0.038 Sum_probs=114.1
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh----
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI---- 100 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l---- 100 (218)
++++.+.+|..+.+.. ....|....|..++++++.+++.. ..+ .++++| ++|.|+++|+.++++++..-
T Consensus 41 ~~~~~v~~a~~~~~~~--~~~~~~~~~~~~~~~~~l~~~la~-~~~--~~~~~i--~~~~ggt~a~~~~~~~~~~~~~~~ 113 (397)
T 3f9t_A 41 NVLPITRKIVDIFLET--NLGDPGLFKGTKLLEEKAVALLGS-LLN--NKDAYG--HIVSGGTEANLMALRCIKNIWREK 113 (397)
T ss_dssp CCCTHHHHHHHHHTTC--CTTSGGGBHHHHHHHHHHHHHHHH-HTT--CTTCEE--EEESCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhh--cCCCcccChhHHHHHHHHHHHHHH-HhC--CCCCCE--EEecCcHHHHHHHHHHHHHHHHhh
Confidence 4567788887776643 222233233555555555554422 111 234544 59999999999998877321
Q ss_pred -------cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--
Q psy6266 101 -------LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-- 171 (218)
Q Consensus 101 -------~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-- 171 (218)
.+||+|++++|+|+++...++..|+ +++.++.. +.+.+|++.+++.+.+. ++.+++.++|+||||.
T Consensus 114 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~ 188 (397)
T 3f9t_A 114 RRKGLSKNEHPKIIVPITAHFSFEKGREMMDL-EYIYAPIK--EDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTID 188 (397)
T ss_dssp HHTTCCCCSSCEEEEETTCCTHHHHHHHHHTC-EEEEECBC--TTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBC
T ss_pred hhhcccCCCCeEEEECCcchhHHHHHHHHcCc-eeEEEeeC--CCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCC
Confidence 1399999999999999999999999 99999873 24678999999999752 3334444679999997
Q ss_pred ---HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 172 ---QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 172 ---~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+|.++|++|++++|.| ++|.++.
T Consensus 189 ~l~~i~~l~~~~~~~li~D--ea~~~~~ 214 (397)
T 3f9t_A 189 NIEELSKIAKENNIYIHVD--AAFGGLV 214 (397)
T ss_dssp CHHHHHHHHHHHTCEEEEE--CTTGGGT
T ss_pred CHHHHHHHHHHhCCeEEEE--ccccchh
Confidence 8999999999999999 8998643
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-17 Score=147.35 Aligned_cols=158 Identities=8% Similarity=-0.115 Sum_probs=112.5
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCc--cCcCCC-C---cHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNH--EYLPVL-G---LESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~--~Y~~~~-G---~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
..+|+|++|.+ ++++++.++++..+.+.. ...+ .|.+.. | .++||+++++++.. .++..+++++|
T Consensus 56 ~~~i~l~~g~~-----~~~~~~~v~~a~~~~l~~-~~~~~~~Y~~~~~G~~~~~~lr~aia~~~~~-~~~~~~~~~~i-- 126 (427)
T 2hox_A 56 GCSADVASGDG-----LFLEEYWKQHKEASAVLV-SPWHRMSYFFNPVSNFISFELEKTIKELHEV-VGNAAAKDRYI-- 126 (427)
T ss_dssp TCCEECCSCCC-----GGGHHHHTTSHHHHCEEE-CTTTTCSSSCSSCCTTCCHHHHHHHHHHHHH-HTCBCCTTCEE--
T ss_pred CceEEecCcCC-----CCCCCHHHHHhHHhhhhc-CCcccccCCCCCCCccchHHHHHHHHHHHHH-hCCcCCCCCEE--
Confidence 46789999952 355677888877766532 1233 499998 9 99999999999964 44433556665
Q ss_pred EEeccChhHHHHHHHHHHH------hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC
Q psy6266 81 VQTLSGTGALRVGAEFLHR------ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP 154 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~------l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 154 (218)
++|.|+++++.++++++.. ++|||+|++++|+|+.|...++..|+ +++.+. +|++.+++.+.
T Consensus 127 v~t~G~~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~~~~~~~~~~g~-~~~~~~--------~d~~~l~~~~~--- 194 (427)
T 2hox_A 127 VFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK-KGYVWA--------GNAANYVNVSN--- 194 (427)
T ss_dssp EEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB-TTEEEE--------EEGGGGTTCSC---
T ss_pred EEeCCHHHHHHHHHHHHhhccccccCCCCCEEEEeCCCcccHHHHHHHcCC-eeeeec--------CCHHHHHHhhc---
Confidence 6999999999999887610 46899999999999999999999998 776542 35555554442
Q ss_pred CCcEEEEcccCCCCcHHHHHHHhhcCeEEEeeC
Q psy6266 155 DNSVIILHACAHNPTAQQVAHMVDKHHVYLLRS 187 (218)
Q Consensus 155 ~~~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D 187 (218)
+++.+++.++||||||.-+.++++ ++..+.|
T Consensus 195 ~~~k~v~l~~p~NPtG~~~~~~l~--~~~~i~d 225 (427)
T 2hox_A 195 PEQYIEMVTSPNNPEGLLRHAVIK--GCKSIYD 225 (427)
T ss_dssp GGGEEEEEESSCTTTCCCCCCSST--TCEEEEE
T ss_pred CCceEEEEcCCCCCcccccHHHHc--CCCEEEe
Confidence 344556667999999982224444 3334444
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-17 Score=139.08 Aligned_cols=162 Identities=12% Similarity=-0.015 Sum_probs=117.9
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEF 96 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~ 96 (218)
|.|..+..++++.|.+|..+.. .++|.+. ..++++++++++.. ..+.. ++++ +++|.|+++|+.+++++
T Consensus 22 ~l~~~~~~~~~~~v~~a~~~~~-----~~~~~~~--~~~~~~~~~~~la~-~~g~~-~~~~--v~~~~g~t~a~~~~~~~ 90 (386)
T 2dr1_A 22 KLFTAGPVACFPEVLEIMKVQM-----FSHRSKE--YRKVHMDTVERLRE-FLEVE-KGEV--LLVPSSGTGIMEASIRN 90 (386)
T ss_dssp EECCSSSCCCCHHHHHHTTSCC-----CCTTSHH--HHHHHHHHHHHHHH-HHTCS-SSEE--EEESSCHHHHHHHHHHH
T ss_pred eeecCCCcCCcHHHHHHHhccc-----ccccCHH--HHHHHHHHHHHHHH-HhCCC-CCcE--EEEeCChHHHHHHHHHH
Confidence 4455555667888887654332 2356543 36677777766532 22211 1333 46899999999999887
Q ss_pred HHHhcCCCeEEecCCCchh--HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH---
Q psy6266 97 LHRILNYTTFYYSKPTWEN--HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--- 171 (218)
Q Consensus 97 l~~l~~gd~V~i~~P~y~~--y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--- 171 (218)
+ +++||+|++++|+|++ |...++..|+ +++.++.. . .+.+|++.+++.+++. +++.+++.++|+||||.
T Consensus 91 l--~~~gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~ 164 (386)
T 2dr1_A 91 G--VSKGGKVLVTIIGAFGKRYKEVVESNGR-KAVVLEYE-P-GKAVKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP 164 (386)
T ss_dssp H--SCTTCEEEEEESSHHHHHHHHHHHHTTC-EEEEEECC-T-TCCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC
T ss_pred h--hcCCCeEEEEcCCchhHHHHHHHHHhCC-ceEEEecC-C-CCCCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC
Confidence 6 6799999999999998 8888999999 89999873 2 4568999999999642 23344444689999997
Q ss_pred --HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 172 --QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 172 --~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+|.++|++|++++|.| ++|....+
T Consensus 165 l~~i~~l~~~~~~~li~D--~a~~~~~~ 190 (386)
T 2dr1_A 165 LPELAKVAKEHDKLVFVD--AVSAMGGA 190 (386)
T ss_dssp HHHHHHHHHHTTCEEEEE--CTTTBTTB
T ss_pred HHHHHHHHHHcCCeEEEE--ccccccCc
Confidence 8999999999999999 88875443
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-17 Score=139.24 Aligned_cols=157 Identities=12% Similarity=0.013 Sum_probs=117.1
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEF 96 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~ 96 (218)
|-|..+..++++.|++|..+... ....|....+..++|+++++++ + .+++++ +.|.|+++|+.+++++
T Consensus 11 yl~~~~~~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~-g------~~~~~v--~~t~g~t~a~~~~~~~ 78 (392)
T 2z9v_A 11 ITLTAGPVNAYPEVLRGLGRTVL---YDYDPAFQLLYEKVVDKAQKAM-R------LSNKPV--ILHGEPVLGLEAAAAS 78 (392)
T ss_dssp EECSSSCCCCCHHHHHHTTSCCC---CTTSHHHHHHHHHHHHHHHHHT-T------CSSCCE--EESSCTHHHHHHHHHH
T ss_pred eeecCCCcCCCHHHHHHHhcccc---ccccHHHHHHHHHHHHHHHHHh-C------CCCCEE--EEeCCchHHHHHHHHH
Confidence 44444556778889887665442 1122333456889999999876 3 223554 5899999999999987
Q ss_pred HHHhcCCCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH---
Q psy6266 97 LHRILNYTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--- 171 (218)
Q Consensus 97 l~~l~~gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--- 171 (218)
+ +.|||+|++++|+|+++. .+++..|+ +++.++.. . ...+|++.+++.+++. +++.+++.++|+||||.
T Consensus 79 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~ 152 (392)
T 2z9v_A 79 L--ISPDDVVLNLASGVYGKGFGYWAKRYSP-HLLEIEVP-Y-NEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP 152 (392)
T ss_dssp H--CCTTCCEEEEESSHHHHHHHHHHHHHCS-CEEEEECC-T-TSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC
T ss_pred h--cCCCCEEEEecCCcccHHHHHHHHHcCC-ceEEeeCC-C-CCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc
Confidence 7 689999999999998863 34456798 89999873 3 3468999999999642 23445556789999997
Q ss_pred --HHHHHhhcCeEEEeeCCceeec
Q psy6266 172 --QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 172 --~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+|.++|+++++++|.| ++|.
T Consensus 153 l~~i~~l~~~~~~~li~D--~a~~ 174 (392)
T 2z9v_A 153 IDAIGALVSAHGAYLIVD--AVSS 174 (392)
T ss_dssp HHHHHHHHHHTTCEEEEE--CTTT
T ss_pred HHHHHHHHHHcCCeEEEE--cccc
Confidence 8999999999999999 7775
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-17 Score=139.36 Aligned_cols=163 Identities=8% Similarity=-0.089 Sum_probs=120.6
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC--CC---ccCcC-CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS--LN---HEYLP-VLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~--~~---~~Y~~-~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
.|+|..|. .+ +.++.|++|..+.+.... .. ..|.. ..|.++||+++++++ + .++++| ++
T Consensus 17 ~i~l~~~~----~~--~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~la~~~-g------~~~~~v--~~ 81 (390)
T 1elu_A 17 KTYFNFGG----QG--ILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF-N------VDPNTI--TI 81 (390)
T ss_dssp SEECCTTT----CC--CCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT-T------SCGGGE--EE
T ss_pred eEEecCCc----cC--CCCHHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHc-C------CCHHHE--EE
Confidence 56666662 23 557788888776654310 00 14554 478999999999886 3 334454 58
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcE
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSV 158 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 158 (218)
|.|+++|+.++++++. +.+||+|++++|+|+++... .+..|+ +++.++....+.+.+|++.+++.+. +++.
T Consensus 82 ~~g~t~a~~~~~~~~~-~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~i~---~~~~ 156 (390)
T 1elu_A 82 TDNVTTGCDIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAARFGI-TYRFFPVAATLNQGDAAAVLANHLG---PKTR 156 (390)
T ss_dssp ESSHHHHHHHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHHHCC-EEEEECCGGGSSSSCHHHHHHTTCC---TTEE
T ss_pred eCChHHHHHHHHhCCC-CCCCCEEEEecCcccHHHHHHHHHHHHhCc-EEEEEcCCCCCCccchHHHHHHhcC---CCce
Confidence 9999999999887652 46899999999999998754 466798 8988887322346678888877764 3455
Q ss_pred EEEcccCCCCcHH-----HHHHHhh----cCeEEEeeCCceeec
Q psy6266 159 IILHACAHNPTAQ-----QVAHMVD----KHHVYLLRSGRINMC 193 (218)
Q Consensus 159 iil~~~p~NPTG~-----~l~~l~~----~~~i~ii~D~r~~y~ 193 (218)
+++.++||||||. +|.++|+ ++++++|.| ++|.
T Consensus 157 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~D--ea~~ 198 (390)
T 1elu_A 157 LVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVD--GAQS 198 (390)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEE--CTTT
T ss_pred EEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEE--cccc
Confidence 6666899999997 8999999 999999999 8876
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=136.14 Aligned_cols=146 Identities=11% Similarity=-0.037 Sum_probs=115.8
Q ss_pred hHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEE
Q psy6266 28 PVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFY 107 (218)
Q Consensus 28 ~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~ 107 (218)
+.+++|..+.++. ....|.+..+..+||+++++++.. . +. +++|.| ++|+.+++.++. +.+||+|+
T Consensus 17 ~~~~~a~~~~l~~--~~~~~~~~~~~~~l~~~la~~~~~-~-------~~--i~~~sG-t~al~~~l~~l~-~~~gd~Vi 82 (388)
T 1b9h_A 17 DAERNGLVRALEQ--GQWWRMGGDEVNSFEREFAAHHGA-A-------HA--LAVTNG-THALELALQVMG-VGPGTEVI 82 (388)
T ss_dssp HHHHHHHHHHHHT--SCCBTTTCSHHHHHHHHHHHHTTC-S-------EE--EEESCH-HHHHHHHHHHTT-CCTTCEEE
T ss_pred HHHHHHHHHHHHc--CCeeecCCHHHHHHHHHHHHHhCC-C-------eE--EEeCCH-HHHHHHHHHHcC-CCCcCEEE
Confidence 8888888877754 334688889999999999998733 1 22 346666 899999887652 46899999
Q ss_pred ecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeE
Q psy6266 108 YSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHV 182 (218)
Q Consensus 108 i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i 182 (218)
+++|+|+.+...++..|+ +++.++.. .+.+.+|++.+++.+. +++.+++ |+||||. +|.++|+++++
T Consensus 83 ~~~~~~~~~~~~~~~~g~-~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~n~tG~~~~l~~i~~la~~~~~ 154 (388)
T 1b9h_A 83 VPAFTFISSSQAAQRLGA-VTVPVDVD-AATYNLDPEAVAAAVT---PRTKVIM---PVHMAGLMADMDALAKISADTGV 154 (388)
T ss_dssp EESSSCTHHHHHHHHTTC-EEEEECBC-TTTCCBCHHHHHHHCC---TTEEEEC---CBCGGGCCCCHHHHHHHHHHHTC
T ss_pred ECCCccHHHHHHHHHcCC-EEEEEecC-CCcCCCCHHHHHHhcC---cCceEEE---EeCCccCcCCHHHHHHHHHHcCC
Confidence 999999999999999999 89999873 3346789999998884 3455554 8999997 89999999999
Q ss_pred EEeeCCceeecc-CCC
Q psy6266 183 YLLRSGRINMCG-LTT 197 (218)
Q Consensus 183 ~ii~D~r~~y~~-l~~ 197 (218)
++|.| ++|.. ..+
T Consensus 155 ~li~D--~a~~~g~~~ 168 (388)
T 1b9h_A 155 PLLQD--AAHAHGARW 168 (388)
T ss_dssp CBCEE--CTTCTTCEE
T ss_pred EEEEe--cchhcCCcc
Confidence 99999 88873 434
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-17 Score=143.33 Aligned_cols=166 Identities=13% Similarity=0.056 Sum_probs=121.6
Q ss_pred CCCceeeeeeeE-EeCCCCCc---cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 5 SGEIHCCEIRNA-YRTEECKP---WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 5 ~~~~~i~l~iG~-~~~~~~~~---~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
.|..+++|+.|. |-|..... ++.+.+.+|+. . ....|.+..|..+||+++++++.. ++ +
T Consensus 31 ~g~~~~~l~~~~~ylD~~~~~~~~~~~~~~~~a~~----~--~~~~y~~~~~~~~l~~~la~~~~~---------~~--~ 93 (456)
T 2ez2_A 31 AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMM----M--GDEAYAGSENFYHLERTVQELFGF---------KH--I 93 (456)
T ss_dssp TTTCGGGSCGGGCSEECSCSSSCCCCCHHHHHHHT----T--CCCCSSSCHHHHHHHHHHHHHHCC---------SE--E
T ss_pred CCCCcccCCcccceeeeccccCCccCCHHHHHHhh----c--chhhcccChhHHHHHHHHHHHhCC---------Cc--E
Confidence 466778888874 22222111 23445554432 2 245699999999999999998743 12 3
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCc-hhHHHHHHHhCCCcceeEeccCC---c-----CccccHHHHHHHHh
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTW-ENHRLVFLNAGFTEAREYRYWNP---E-----KRAVDFTGMYEDLV 151 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y-~~y~~~~~~~g~~~~~~~~~~~~---~-----~~~~d~~~~~~~l~ 151 (218)
++|.||++|+.++++++ ++||| ++++|+| +.|...++..|+ +++.++.... + .+.+|++.+++.+.
T Consensus 94 ~~~~~gt~a~~~al~~l--~~~gd--i~~~~~~~~~~~~~~~~~G~-~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~~i~ 168 (456)
T 2ez2_A 94 VPTHQGRGAENLLSQLA--IKPGQ--YVAGNMYFTTTRYHQEKNGA-VFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLID 168 (456)
T ss_dssp EEESSHHHHHHHHHHHH--CCTTC--EEEESSCCHHHHHHHHHTTC-EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHHh--CCCCC--EeccccccchhHHHHHHcCC-EEEEecccccccccccccccCCCCHHHHHHHHH
Confidence 68999999999998877 68999 7899999 998899999999 8988876311 1 25679999999886
Q ss_pred cCC-CCcEEEEcccCCC-CcHH--------HHHHHhhcCeEEEeeCCceeecc
Q psy6266 152 NAP-DNSVIILHACAHN-PTAQ--------QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 152 ~~~-~~~~iil~~~p~N-PTG~--------~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+.+ .+..+++.++||| |||. +|.++|++|++++|.| ++|..
T Consensus 169 ~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~D--e~~~~ 219 (456)
T 2ez2_A 169 EKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYD--ATRCV 219 (456)
T ss_dssp HHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEE--CTTHH
T ss_pred hccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEE--ccccc
Confidence 432 1124555577999 9996 7899999999999999 88875
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-16 Score=135.47 Aligned_cols=168 Identities=11% Similarity=0.032 Sum_probs=125.7
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCc------cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNH------EYLPVLGLESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~------~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
|..+|+|..|.. + +.++.|.+|..+.++... ..+ .|.+..|.++||+++++++.. . ++++|
T Consensus 21 g~~~i~l~~~~~----~--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~-----~~~~v 88 (406)
T 1kmj_A 21 GLPLAYLDSAAS----A--QKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINA-R-----SAEEL 88 (406)
T ss_dssp TEECEECCTTTC----C--CCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTC-S-----CGGGE
T ss_pred CCceEEecCCcc----C--CCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHcCC-C-----CCCeE
Confidence 567889988842 2 467788888777664311 112 234678899999999988632 1 23554
Q ss_pred EEEEeccChhHHHHHHHHHHH--hcCCCeEEecCCCchh----HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhc
Q psy6266 79 FGVQTLSGTGALRVGAEFLHR--ILNYTTFYYSKPTWEN----HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~--l~~gd~V~i~~P~y~~----y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 152 (218)
+.|.|+++|+.++++++.. +.+||+|++++|+|++ |..+++..|+ +++.++.. +.+.+|++.+++.+.
T Consensus 89 --~~~~g~t~a~~~~~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~--~~~~~d~~~l~~~l~- 162 (406)
T 1kmj_A 89 --VFVRGTTEGINLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGA-ELRVIPLN--PDGTLQLETLPTLFD- 162 (406)
T ss_dssp --EEESSHHHHHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTC-EEEEECBC--TTSCBCGGGHHHHCC-
T ss_pred --EEeCChhHHHHHHHHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCC-EEEEEecC--CCCCcCHHHHHHHhc-
Confidence 5899999999999887621 4789999999999865 4455677898 88888873 245679999998885
Q ss_pred CCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 153 APDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+++.+++.++|+||||. +|.++|++|++++|.| ++|...
T Consensus 163 --~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D--~~~~~g 206 (406)
T 1kmj_A 163 --EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVD--GAQAVM 206 (406)
T ss_dssp --TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE--CTTTTT
T ss_pred --cCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEE--chhhcC
Confidence 34556666789999997 8999999999999999 888753
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-16 Score=134.26 Aligned_cols=165 Identities=9% Similarity=-0.072 Sum_probs=120.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCC----CCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPV----LGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~----~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.|..+||++-..| ..+..++.|.+|..+.+++ ....+.|... ....+|++++++++.. +..
T Consensus 57 ~g~~~ld~~s~~~----l~~~~~p~v~~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~---------~~~- 122 (409)
T 3kki_A 57 ASPDDIILQSNDY----LALANHPLIKARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGF---------DEC- 122 (409)
T ss_dssp CCTTSEECCCSCT----TCCTTCHHHHHHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTC---------SEE-
T ss_pred CCCceEEeeccCc----cCCcCCHHHHHHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCC---------CeE-
Confidence 5778888876543 2244578888887776654 1122333333 4467888888887632 122
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEE
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI 159 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i 159 (218)
+++.+|++++..+++++ ++|||.|++++|+|+.+...++..|+ +++.++. .|++.+++.+.+. ++.+
T Consensus 123 -i~~~sGt~a~~~~l~~~--~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~~~~-------~d~~~le~~l~~~--~~~~ 189 (409)
T 3kki_A 123 -LLSQSGWNANVGLLQTI--CQPNTNVYIDFFAHMSLWEGARYANA-QAHPFMH-------NNCDHLRMLIQRH--GPGI 189 (409)
T ss_dssp -EEESCHHHHHHHHHHHH--CCTTCEEEEETTSCHHHHHHHHHTTC-EEEEECT-------TCHHHHHHHHHHH--CSCE
T ss_pred -EEecchHHHHHHHHHHh--cCCCCEEEECCCcCHHHHHHHHHcCC-eEEEecC-------CCHHHHHHHHHhc--CCeE
Confidence 34455578888887776 68999999999999999999999998 7777643 4788888888642 2345
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++.++||||||. +|.++|++|++++|.| ++|.+..++
T Consensus 190 vi~~~~~nptG~~~~l~~l~~la~~~~~~li~D--e~~~~g~~g 231 (409)
T 3kki_A 190 IVVDSIYSTLGTIAPLAELVNISKEFGCALLVD--ESHSLGTHG 231 (409)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE--CTTTTTTSS
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEE--CCccccccC
Confidence 555789999997 8999999999999999 999875553
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.9e-16 Score=137.10 Aligned_cols=161 Identities=10% Similarity=-0.015 Sum_probs=125.7
Q ss_pred CCCcee--eeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC-CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 5 SGEIHC--CEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP-VLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 5 ~~~~~i--~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
.|.+++ +|++|. +++++|+.+++|..+..+. . .|.+ ..|.++||+++++++.. ++ ++
T Consensus 12 gg~~~~~~~l~~~~-----p~~~~p~~~~~a~~~~~~~--~--~y~~~~~~~~~l~~~la~~~~~---------~~--v~ 71 (424)
T 2po3_A 12 GGPAAFDQPLLVGR-----PNRIDRARLYERLDRALDS--Q--WLSNGGPLVREFEERVAGLAGV---------RH--AV 71 (424)
T ss_dssp TCCCSCSSCEETTC-----CCCCCHHHHHHHHHHHHHH--T--CCSSSCHHHHHHHHHHHHHHTS---------SE--EE
T ss_pred cCCccccccccccC-----CCCCChHHHHHHHHHHHhc--C--CcccCCHHHHHHHHHHHHHhCC---------Ce--EE
Confidence 466666 688884 3355678899888777653 1 4887 78999999999998732 23 46
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
+|.|+++|+.++++++ .+||+|++++|+|+++...++..|+ +++.++.. .+.+.+|++.+++.+. +++.+++
T Consensus 72 ~~~ggt~al~~~l~~l---~~gd~Vlv~~~~~~~~~~~~~~~G~-~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~ 143 (424)
T 2po3_A 72 ATCNATAGLQLLAHAA---GLTGEVIMPSMTFAATPHALRWIGL-TPVFADID-PDTGNLDPDQVAAAVT---PRTSAVV 143 (424)
T ss_dssp EESCHHHHHHHHHHHH---TCCSEEEEESSSCTHHHHHHHHTTC-EEEEECBC-TTTSSBCHHHHGGGCC---TTEEEEE
T ss_pred EeCCHHHHHHHHHHHc---CCCCEEEECCCccHHHHHHHHHcCC-EEEEEecC-CCcCCcCHHHHHHhhC---cCCcEEE
Confidence 9999999999998876 3799999999999999999999999 89999873 3356779988887774 2344444
Q ss_pred cccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec-cCCCC
Q psy6266 162 HACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC-GLTTQ 198 (218)
Q Consensus 162 ~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~-~l~~~ 198 (218)
. +||||. +|.++|+++++++|.| ++|. ++.++
T Consensus 144 ~---~~~tG~~~~l~~i~~la~~~~~~li~D--ea~~~g~~~~ 181 (424)
T 2po3_A 144 G---VHLWGRPCAADQLRKVADEHGLRLYFD--AAHALGCAVD 181 (424)
T ss_dssp E---ECGGGCCCCHHHHHHHHHHTTCEEEEE--CTTCTTCEET
T ss_pred E---ECCCCCcCCHHHHHHHHHHcCCEEEEE--CccccCCeEC
Confidence 3 348997 8999999999999999 8988 56543
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-16 Score=136.86 Aligned_cols=166 Identities=12% Similarity=-0.009 Sum_probs=121.5
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCC--CccCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSL--NHEYL--PVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~--~~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.|...|||+.|. +-| +.+++.+.+|..+..+. ... .+.|. ...+..+||+++++++ + .+ +.
T Consensus 43 ~g~~~id~~~~~---~~g-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~-g------~~-~~-- 108 (401)
T 1fc4_A 43 DGSHVINFCANN---YLG-LANHPDLIAAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFL-G------ME-DA-- 108 (401)
T ss_dssp TSCEEEECCCSC---TTS-CTTCHHHHHHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHH-T------CS-EE--
T ss_pred CCccEEEeeccC---ccc-ccCCHHHHHHHHHHHHHhCCCCCCCCcccCCcHHHHHHHHHHHHHh-C------CC-cE--
Confidence 688899999994 333 22578888887766543 111 12343 2578899999999987 4 22 22
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCC---C
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD---N 156 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~ 156 (218)
++++.| ++++..+++++ +.+||+|++++|+|+++...++..|+ +++.++. .|++.+++.+++..+ +
T Consensus 109 i~~~sG-s~a~~~~~~~~--~~~gd~v~~~~~~~~~~~~~~~~~g~-~~~~~~~-------~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 109 ILYSSC-FDANGGLFETL--LGAEDAIISDALNHASIIDGVRLCKA-KRYRYAN-------NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp EEESCH-HHHHHTTHHHH--CCTTCEEEEETTCCHHHHHHHHTSCS-EEEEECT-------TCHHHHHHHHHHHHHTTCS
T ss_pred EEeCCh-HHHHHHHHHHH--cCCCCEEEEcchhHHHHHHHHHHcCC-ceEEECC-------CCHHHHHHHHHHhhccCCC
Confidence 235555 77888877766 67999999999999998888888898 8877753 366777777754211 3
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec-cCCC
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC-GLTT 197 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~-~l~~ 197 (218)
+.+++.++||||||. +|.++|+++++++|.| ++|. ++.+
T Consensus 178 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~D--e~~~~g~~~ 222 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVD--DSHAVGFVG 222 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEE--CTTTTTTSS
T ss_pred ceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEE--CcccccccC
Confidence 456666889999997 8999999999999999 9995 8763
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-16 Score=137.29 Aligned_cols=155 Identities=14% Similarity=0.084 Sum_probs=122.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.+.+++||+.|. +...+ ++++..++... ..|.+..|..+||+++++++.. ++ ++.|.
T Consensus 4 m~~~~~~l~~~~-------~~~~~-~~~~~~~~~~~----~~~~~~~~~~~l~~~la~~~~~---------~~--~~~~~ 60 (374)
T 3uwc_A 4 MRVPYSYLERQF-------ADIEP-YLNDLREFIKT----ADFTLGAELEKFEKRFAALHNA---------PH--AIGVG 60 (374)
T ss_dssp CCBCSCCHHHHT-------SSCHH-HHHHHHHHHHH----TCCSSCHHHHHHHHHHHHHTTC---------SE--EEEES
T ss_pred CcceeeccccCC-------CCchH-HHHHHHHHHHc----CCcccChhHHHHHHHHHHHhCC---------Cc--EEEeC
Confidence 356788999884 23344 88887777643 2588899999999999998743 12 35788
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
||++|+.+++.++. +.+||+|++++|+|+++...++..|+ +++.++.. +.+.+|++.+++.+. +++.+++
T Consensus 61 ~gt~a~~~~~~~~~-~~~gd~v~~~~~~~~~~~~~~~~~g~-~~~~~~~~--~~~~~d~~~l~~~~~---~~~~~v~--- 130 (374)
T 3uwc_A 61 TGTDALAMSFKMLN-IGAGDEVITCANTFIASVGAIVQAGA-TPVLVDSE--NGYVIDPEKIEAAIT---DKTKAIM--- 130 (374)
T ss_dssp CHHHHHHHHHHHTT-CCTTCEEEEESSSCHHHHHHHHHTTC-EEEEECBC--TTSSBCGGGTGGGCC---TTEEEEC---
T ss_pred CHHHHHHHHHHHcC-CCCCCEEEECCCccHHHHHHHHHcCC-EEEEEecC--CCCCcCHHHHHHhCC---CCceEEE---
Confidence 88999988877642 46899999999999999999999999 89999874 456779888877764 3445454
Q ss_pred CCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 165 AHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
|+||||. +|.++|+++++++|.| ++|..
T Consensus 131 ~~n~~G~~~~~~~i~~~~~~~~~~li~D--~~~~~ 163 (374)
T 3uwc_A 131 PVHYTGNIADMPALAKIAKKHNLHIVED--ACQTI 163 (374)
T ss_dssp CBCGGGCCCCHHHHHHHHHHTTCEEEEE--CTTCT
T ss_pred EeCCcCCcCCHHHHHHHHHHcCCEEEEe--CCCcc
Confidence 8999997 8999999999999999 88764
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-16 Score=137.86 Aligned_cols=147 Identities=7% Similarity=0.019 Sum_probs=112.2
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCC-CC-cHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEeccChhHHHHHHHHHHHh
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPV-LG-LESFSSAATRMLLGGDASPPLREG-RAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~-~G-~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
..+++.|.+|+.+.. ..+|.+. .+ .++||+++++++.. +++ +| ++|.|+++|+.+++.++ +
T Consensus 27 ~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~l~~~la~~~~~-------~~~~~v--~~~~g~t~al~~~~~~~--~ 90 (396)
T 2ch1_A 27 SNCSKRVLTAMTNTV-----LSNFHAELFRTMDEVKDGLRYIFQT-------ENRATM--CVSGSAHAGMEAMLSNL--L 90 (396)
T ss_dssp CCCCHHHHHHTTSCC-----CCTTCHHHHHHHHHHHHHHHHHHTC-------CCSCEE--EESSCHHHHHHHHHHHH--C
T ss_pred CCCCHHHHHHhcccc-----ccCCChhHHHHHHHHHHHHHHHhCC-------CCCcEE--EECCcHHHHHHHHHHHh--c
Confidence 456777777654322 2236543 23 79999999998732 223 44 59999999999998877 6
Q ss_pred cCCCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HH
Q psy6266 101 LNYTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l 173 (218)
.+||+|++++|+|+.|. ..++..|+ +++.++.. ..+.+|++.+++.+++. ++.+++.++||||||. +|
T Consensus 91 ~~gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~~~i 165 (396)
T 2ch1_A 91 EEGDRVLIAVNGIWAERAVEMSERYGA-DVRTIEGP--PDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQPLEGV 165 (396)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTC-EEEEEECC--TTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTTH
T ss_pred CCCCeEEEEcCCcccHHHHHHHHHcCC-ceEEecCC--CCCCCCHHHHHHHHHhC--CCCEEEEECCCCCCceecCHHHH
Confidence 79999999999999995 47788899 89999873 24568999999988641 2334444789999997 79
Q ss_pred HHHhhcCeEEEeeCCceeec
Q psy6266 174 AHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~r~~y~ 193 (218)
.++|+++++++|.| ++|.
T Consensus 166 ~~l~~~~~~~li~D--ea~~ 183 (396)
T 2ch1_A 166 GQICHQHDCLLIVD--AVAS 183 (396)
T ss_dssp HHHHHHTTCEEEEE--CTTT
T ss_pred HHHHHHcCCEEEEE--cccc
Confidence 99999999999999 8876
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-16 Score=136.67 Aligned_cols=154 Identities=12% Similarity=-0.007 Sum_probs=115.5
Q ss_pred CCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEeccChhHHHHHHHHH
Q psy6266 19 TEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLSGTGALRVGAEFL 97 (218)
Q Consensus 19 ~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G~~~al~~~~~~l 97 (218)
+..+..++++.|.+|+.+.. ..+|.+. ..++++++++++.. ..+ .+++ ++ ++|.|+++|+.++++++
T Consensus 38 ~~~~~~~~~~~v~~a~~~~~-----~~~~~~~--~~~~~~~~~~~la~-~~g--~~~~~~v--~~t~g~t~al~~~~~~~ 105 (393)
T 1vjo_A 38 LGPGPSNAHPSVLQAMNVSP-----VGHLDPA--FLALMDEIQSLLRY-VWQ--TENPLTI--AVSGTGTAAMEATIANA 105 (393)
T ss_dssp CSSSCCCCCHHHHHHHSSCC-----CCTTSHH--HHHHHHHHHHHHHH-HHT--CCCSCEE--EESSCHHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHhccc-----ccccCHH--HHHHHHHHHHHHHH-HhC--CCCCcEE--EEeCchHHHHHHHHHhc
Confidence 33344566788887765433 1246543 56777777776632 211 2334 44 69999999999999877
Q ss_pred HHhcCCCeEEecCCCchh--HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH----
Q psy6266 98 HRILNYTTFYYSKPTWEN--HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ---- 171 (218)
Q Consensus 98 ~~l~~gd~V~i~~P~y~~--y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~---- 171 (218)
+++||+|++++|+|++ |...++..|+ +++.++.. . .+.+|++.+++.+.+. ++.+++.++|+||||.
T Consensus 106 --~~~gd~Vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~l 178 (393)
T 1vjo_A 106 --VEPGDVVLIGVAGYFGNRLVDMAGRYGA-DVRTISKP-W-GEVFSLEELRTALETH--RPAILALVHAETSTGARQPL 178 (393)
T ss_dssp --CCTTCEEEEEESSHHHHHHHHHHHHTTC-EEEEEECC-T-TCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCC
T ss_pred --cCCCCEEEEEcCChhHHHHHHHHHHcCC-ceEEEecC-C-CCCCCHHHHHHHHhhC--CceEEEEeccCCCcceeccH
Confidence 6899999999999999 9999999999 89999873 2 3568999999988641 2334555789999997
Q ss_pred -HHHHHhhcCeEEEeeCCceeec
Q psy6266 172 -QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 172 -~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+|.++|+++++++|.| ++|.
T Consensus 179 ~~i~~l~~~~~~~li~D--ea~~ 199 (393)
T 1vjo_A 179 EGVGELCREFGTLLLVD--TVTS 199 (393)
T ss_dssp TTHHHHHHHHTCEEEEE--CTTT
T ss_pred HHHHHHHHHcCCEEEEE--CCcc
Confidence 8999999999999999 8887
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-16 Score=140.95 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=122.1
Q ss_pred CCCceeeeeeeE-EeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIHCCEIRNA-YRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~-~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|..+++|+.|. |-|.....++ +.|+++..+.+.. ....|.+..|..+||+++++++.. ++ ++.|
T Consensus 32 ~g~~~~~~~~g~~ylD~~~~~~~-~~v~~a~~~~~~~--~~~~y~~~~~~~~l~~~la~~~~~---------~~--v~~t 97 (467)
T 1ax4_A 32 AGYNPFLLPSSAVYIDLLTDSGT-NAMSDHQWAAMIT--GDEAYAGSRNYYDLKDKAKELFNY---------DY--IIPA 97 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCSSSC-CCEEHHHHHHHHT--CCCCSSSCHHHHHHHHHHHHHHCC---------CE--EEEE
T ss_pred cCcCcccCCCCceeeecccCcCC-HHHHHHHHHHHhh--cccccccCccHHHHHHHHHHHcCC---------Cc--EEEc
Confidence 466677777774 2232223333 6777766665543 345799889999999999998732 23 3689
Q ss_pred ccChhHHHHHHHHHHHhc----CCCe---EEecCCCchhHHHHHHHhCCCcceeEeccC---Cc-----CccccHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRIL----NYTT---FYYSKPTWENHRLVFLNAGFTEAREYRYWN---PE-----KRAVDFTGMYE 148 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~----~gd~---V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~---~~-----~~~~d~~~~~~ 148 (218)
.|+++|+.++++++ ++ |||+ |+++.|.|+.+...++..|+ +++..+... .+ .+.+|++.+++
T Consensus 98 ~ggt~A~~~al~~~--~~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~d~~~le~ 174 (467)
T 1ax4_A 98 HQGRGAENILFPVL--LKYKQKEGKAKNPVFISNFHFDTTAAHVELNGC-KAINIVTEKAFDSETYDDWKGDFDIKKLKE 174 (467)
T ss_dssp SSHHHHHHHHHHHH--HHHHHHTTCCSSCEEEESSCCHHHHHHHHHTTC-EEEECBCGGGGCTTSCCTTTTCBCHHHHHH
T ss_pred CCcHHHHHHHHHHH--HHhhccCCCccceEEEeccccchhhHHHhccCC-ceecccccccccccccCCcccccCHHHHHH
Confidence 99999999998876 45 8999 99999999999888999998 777655321 11 23579999999
Q ss_pred HHhcCC-CCcEEEEcccCCCCc-HH--------HHHHHhhcCeEEEeeC
Q psy6266 149 DLVNAP-DNSVIILHACAHNPT-AQ--------QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 149 ~l~~~~-~~~~iil~~~p~NPT-G~--------~l~~l~~~~~i~ii~D 187 (218)
.+++.. +++.+++.++||||| |. +|.++|++|++++|+|
T Consensus 175 ~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~D 223 (467)
T 1ax4_A 175 NIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMD 223 (467)
T ss_dssp HHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEE
Confidence 886421 245566667899999 53 7999999999999999
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-15 Score=130.71 Aligned_cols=167 Identities=13% Similarity=-0.038 Sum_probs=124.5
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCCCccCcCCCCc----HHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSLNHEYLPVLGL----ESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~Y~~~~G~----~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.|..+|||+.|.| -| +..++.|++|..+.++. ......|....|. .+|++++++++ + . +++
T Consensus 62 ~g~~~id~~~~~~---lg-~~~~~~v~~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~-g-~-------~~~- 127 (427)
T 2w8t_A 62 RGKDTILLGTYNY---MG-MTFDPDVIAAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFY-G-T-------TGA- 127 (427)
T ss_dssp TTEEEEECSCCCT---TC-GGGCHHHHHHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHH-T-C-------SEE-
T ss_pred CCceEEEEECccc---cc-CCCCHHHHHHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHh-C-C-------Cce-
Confidence 5778899999942 22 34677888887766543 1122334455554 88999999887 4 2 122
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCC-CcE
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD-NSV 158 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~-~~~ 158 (218)
+++.+|++|+..++.++ +.+||.|+++.|+|+++...++..|+ +++.++. .|++.+++.|++..+ +..
T Consensus 128 -i~~~sGs~a~~~al~~l--~~~gd~vl~~~~~h~~~~~~~~~~g~-~~~~~~~-------~d~~~le~~l~~~~~~~~~ 196 (427)
T 2w8t_A 128 -IVFSTGYMANLGIISTL--AGKGEYVILDADSHASIYDGCQQGNA-EIVRFRH-------NSVEDLDKRLGRLPKEPAK 196 (427)
T ss_dssp -EEESCHHHHHHHHHHHH--SCTTCEEEEETTCCHHHHHHHHHSCS-EEEEECT-------TCHHHHHHHHHTSCSSSCE
T ss_pred -EEecCcHHHHHHHHHHh--cCCCCEEEECCcccHHHHHHHHHcCC-eeEEeCC-------CCHHHHHHHHHhccCCCCe
Confidence 35566677888777766 67999999999999999999999998 8887753 478888888875322 455
Q ss_pred EEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 159 IILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 159 iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+++..+++||||. +|.++|++|++++|.| ++|.++.++
T Consensus 197 ~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~D--ea~~~~~~~ 239 (427)
T 2w8t_A 197 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVD--EAHSMGFFG 239 (427)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTCEEEEE--CTTTTTTSS
T ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEE--CCccccccC
Confidence 6666789999997 8999999999999999 999987664
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-16 Score=132.95 Aligned_cols=161 Identities=7% Similarity=0.026 Sum_probs=122.4
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
..|+|+.+. .+ ++++.|++|..+... +|.+..|..++++++++++.. ..+ .++++| ++|.|++
T Consensus 14 ~~i~l~~~~----~~--~~~~~v~~a~~~~~~------~~~~~~g~~~~~~~~~~~l~~-~~g--~~~~~v--~~~~g~t 76 (359)
T 1svv_A 14 KPYSFVNDY----SV--GMHPKILDLMARDNM------TQHAGYGQDSHCAKAARLIGE-LLE--RPDADV--HFISGGT 76 (359)
T ss_dssp -CEECSCSC----SS--CCCHHHHHHHHHHTT------CCCCSTTCSHHHHHHHHHHHH-HHT--CTTSEE--EEESCHH
T ss_pred eeEEecCCC----cC--CCCHHHHHHHHHHHh------hccccccccHHHHHHHHHHHH-HhC--CCCccE--EEeCCch
Confidence 467777653 33 568889988777652 377788999999999888743 222 334554 5899999
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHH--HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC----CCcEEEE
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRL--VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP----DNSVIIL 161 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~----~~~~iil 161 (218)
+|+.++++++ +.+||+|++++|+|+++.. .++..|+ +++.++. + .+.+|++.+++.+++.. .++.+++
T Consensus 77 ~a~~~~~~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~-~--~~~~d~~~l~~~l~~~~~~~~~~~~~v~ 150 (359)
T 1svv_A 77 QTNLIACSLA--LRPWEAVIATQLGHISTHETGAIEATGH-KVVTAPC-P--DGKLRVADIESALHENRSEHMVIPKLVY 150 (359)
T ss_dssp HHHHHHHHHH--CCTTEEEEEETTSHHHHSSTTHHHHTTC-CEEEECC-T--TSCCCHHHHHHHHHHSCSTTSCEEEEEE
T ss_pred HHHHHHHHHH--hCCCCEEEEcccchHHHHHHHHHhcCCC-eeEEEeC-C--CCeecHHHHHHHHHHHHhccCCCceEEE
Confidence 9999999877 6799999999999999987 5788899 8999876 2 46789999999987521 1234444
Q ss_pred cccCCCCcHH--------HHHHHhhcCeEEEeeCCceeecc
Q psy6266 162 HACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 162 ~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
.++| ||||. +|.++|++|++++|.| ++|.+
T Consensus 151 ~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~ 188 (359)
T 1svv_A 151 ISNT-TEVGTQYTKQELEDISASCKEHGLYLFLD--GARLA 188 (359)
T ss_dssp EESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEE--CTTHH
T ss_pred EEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEE--ccchh
Confidence 4556 89996 6889999999999999 88843
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.5e-16 Score=135.68 Aligned_cols=153 Identities=12% Similarity=-0.027 Sum_probs=117.1
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCc-CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYL-PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.+++++.|. +..++.++++..+.... ..|. +..|..+||+++++++.. . + ++.|.||
T Consensus 23 ~~~~l~~~~-------p~~~~~~~~a~~~~~~~----~~~~~~~~~~~~l~~~la~~~~~-~--------~--~i~~~~g 80 (391)
T 3dr4_A 23 DLPRISVAA-------PRLDGNERDYVLECMDT----TWISSVGRFIVEFEKAFADYCGV-K--------H--AIACNNG 80 (391)
T ss_dssp -----CCCC-------CCCCSSHHHHHHHHHHH----TCCSSCSHHHHHHHHHHHHHHTC-S--------E--EEEESSH
T ss_pred CCceeccCC-------CCCCHHHHHHHHHHHHc----CCccCCChHHHHHHHHHHHHhCC-C--------c--EEEeCCH
Confidence 567777773 34567888887776643 2466 788999999999998743 1 2 3578888
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++|+.+++.++. +.+||+|++++|+|+.+...++..|+ +++.++.. .+.+.+|++.+++.+. +++.+++ ++
T Consensus 81 t~al~~~l~~~~-~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~d~~~l~~~~~---~~~~~v~---~~ 151 (391)
T 3dr4_A 81 TTALHLALVAMG-IGPGDEVIVPSLTYIASANSVTYCGA-TPVLVDND-PRTFNLDAAKLEALIT---PRTKAIM---PV 151 (391)
T ss_dssp HHHHHHHHHHHT-CCTTCEEEEESSSCTHHHHHHHHTTC-EEEEECBC-TTTCSBCGGGSGGGCC---TTEEEEC---CB
T ss_pred HHHHHHHHHHcC-CCCcCEEEECCCchHHHHHHHHHCCC-EEEEEecC-ccccCcCHHHHHHhcC---CCceEEE---EE
Confidence 999998887652 46899999999999999999999999 89999873 3456789888877664 3455454 57
Q ss_pred CCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 167 NPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 167 NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
||||. +|.++|+++++++|.| ++|.
T Consensus 152 n~tG~~~~~~~i~~l~~~~~~~li~D--~a~~ 181 (391)
T 3dr4_A 152 HLYGQICDMDPILEVARRHNLLVIED--AAEA 181 (391)
T ss_dssp CGGGCCCCHHHHHHHHHHTTCEEEEE--CTTC
T ss_pred CCCCChhhHHHHHHHHHHcCCEEEEE--Cccc
Confidence 89997 8999999999999999 8876
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.4e-16 Score=136.67 Aligned_cols=153 Identities=10% Similarity=0.028 Sum_probs=113.1
Q ss_pred cCchHHHHHHHHHhh--cCCC-----Cc--cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHH
Q psy6266 25 WVLPVVRQAEKELAA--DDSL-----NH--EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAE 95 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~--~~~~-----~~--~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~ 95 (218)
++++.|.+|..+.+. .... .+ .|....+..+||+.+++++. .++++| +.|.|+++|+.++++
T Consensus 33 ~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~-------~~~~~v--~~~~ggt~a~~~a~~ 103 (423)
T 3lvm_A 33 PVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG-------ADPREI--VFTSGATESDNLAIK 103 (423)
T ss_dssp CCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHT-------CCGGGE--EEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcC-------CCCCeE--EEeCChHHHHHHHHH
Confidence 668889888776554 1000 00 11122355788888888763 234555 589999999999988
Q ss_pred HHHH--hcCCCeEEecCCCchhHHHHHHHh---CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcH
Q psy6266 96 FLHR--ILNYTTFYYSKPTWENHRLVFLNA---GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170 (218)
Q Consensus 96 ~l~~--l~~gd~V~i~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG 170 (218)
++.. ..|||+|++++|+|+++...+... |+ +++.++.. . .+.+|++.+++.+. +++.+++.++||||||
T Consensus 104 ~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG 177 (423)
T 3lvm_A 104 GAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF-EVTYLAPQ-R-NGIIDLKELEAAMR---DDTILVSIMHVNNEIG 177 (423)
T ss_dssp HHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTC-EEEEECCC-T-TSCCCHHHHHHHCC---TTEEEEECCSBCTTTC
T ss_pred HHHHhhccCCCEEEECCccchHHHHHHHHHHHcCC-EEEEeccC-C-CCccCHHHHHHhcC---CCcEEEEEeCCCCCCc
Confidence 7631 127999999999999998777444 98 89888873 2 46679999998885 3456777788999999
Q ss_pred H-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 171 Q-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 171 ~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
. +|.++|+++++++|.| ++|..
T Consensus 178 ~~~~l~~i~~l~~~~~~~li~D--ea~~~ 204 (423)
T 3lvm_A 178 VVQDIAAIGEMCRARGIIYHVD--ATQSV 204 (423)
T ss_dssp BBCCHHHHHHHHHHHTCEEEEE--CTTTT
T ss_pred cccCHHHHHHHHHHcCCEEEEE--hhhhc
Confidence 7 8999999999999999 88764
|
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.8e-15 Score=129.38 Aligned_cols=155 Identities=12% Similarity=-0.010 Sum_probs=112.2
Q ss_pred CCCccCchHHHHHHHHHhhcCCC--CccCcC----CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHH
Q psy6266 21 ECKPWVLPVVRQAEKELAADDSL--NHEYLP----VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGA 94 (218)
Q Consensus 21 ~~~~~~~~~v~~a~~~~~~~~~~--~~~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~ 94 (218)
.+..++++.|.+|..+.+.+... ...|.. .....++|+.+++++ + .+++++ +.|.|+++|+.+++
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-~------~~~~~i--~~~~g~~~a~~~~~ 77 (382)
T 4hvk_A 7 TSAKPVDERILEAMLPYMTESFGNPSSVHSYGFKAREAVQEAREKVAKLV-N------GGGGTV--VFTSGATEANNLAI 77 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSCCCTTCSSHHHHHHHHHHHHHHHHHHHHT-T------CTTEEE--EEESSHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHhhcCCCcccchHHHHHHHHHHHHHHHHHHHc-C------CCcCeE--EEECCchHHHHHHH
Confidence 34456788999988776643100 001211 223447777777665 3 233444 68999999999998
Q ss_pred HHHHH--hcCCCeEEecCCCchhHHHHHHH---hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCc
Q psy6266 95 EFLHR--ILNYTTFYYSKPTWENHRLVFLN---AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169 (218)
Q Consensus 95 ~~l~~--l~~gd~V~i~~P~y~~y~~~~~~---~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPT 169 (218)
+++.. .+|||+|++++|.|+++...+.. .|+ +++.++.. +.+.+|++.+++.+. +++.+++.++|||||
T Consensus 78 ~~~~~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~npt 151 (382)
T 4hvk_A 78 IGYAMRNARKGKHILVSAVEHMSVINPAKFLQKQGF-EVEYIPVG--KYGEVDVSFIDQKLR---DDTILVSVQHANNEI 151 (382)
T ss_dssp HHHHHHHGGGCCEEEEETTCCHHHHHHHHHHHHTTC-EEEEECBC--TTSCBCHHHHHHHCC---TTEEEEECCSBCTTT
T ss_pred HHhhhhhcCCCCEEEECCCCcHHHHHHHHHHHhcCC-EEEEeccC--CCCCcCHHHHHHHhc---cCceEEEEECCCCCc
Confidence 87630 17999999999999999876555 488 88888873 345789999998885 455677778999999
Q ss_pred HH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 170 AQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 170 G~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
|. +|.++|++|++ +|.| +++.
T Consensus 152 G~~~~~~~i~~l~~~~~~-li~D--~a~~ 177 (382)
T 4hvk_A 152 GTIQPVEEISEVLAGKAA-LHID--ATAS 177 (382)
T ss_dssp CBBCCHHHHHHHHSSSSE-EEEE--CTTT
T ss_pred eeeCCHHHHHHHHHHcCE-EEEE--hHHh
Confidence 97 89999999999 9999 6654
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.62 E-value=7e-16 Score=133.95 Aligned_cols=163 Identities=10% Similarity=-0.054 Sum_probs=119.8
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC--CccCc----CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL--NHEYL----PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~~Y~----~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
.+.|..+. ..++++.|++|..+.+..... ...|. +..+..+||+++++++ + .++++| +.
T Consensus 27 ~~~ld~~~------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g------~~~~~v--~~ 91 (406)
T 3cai_A 27 WVHFDAPA------GMLIPDSVATTVSTAFRRSGASTVGAHPSARRSAAVLDAAREAVADLV-N------ADPGGV--VL 91 (406)
T ss_dssp CEECBGGG------CCCCCHHHHHHHHHHHHHCCSSSCSSSHHHHHHHHHHHHHHHHHHHHH-T------CCGGGE--EE
T ss_pred eEEEeCCC------cCCCCHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHHHHHHh-C------CCCCeE--EE
Confidence 45555553 225688899888776643110 11232 3467899999999887 3 233455 58
Q ss_pred eccChhHHHHHHHHHH-HhcCCCeEEecCCCchhHHHHHHH----hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 83 TLSGTGALRVGAEFLH-RILNYTTFYYSKPTWENHRLVFLN----AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 83 t~G~~~al~~~~~~l~-~l~~gd~V~i~~P~y~~y~~~~~~----~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
|.|+++++.++++++. .+.+||+|++++|+|+++...+.. .|+ +++.++.. .+.+.+|++.+++.+. +++
T Consensus 92 ~~g~t~al~~~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-~v~~v~~~-~~~~~~d~~~l~~~l~---~~~ 166 (406)
T 3cai_A 92 GADRAVLLSLLAEASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGA-KVKWAEVD-IETGELPTWQWESLIS---KST 166 (406)
T ss_dssp ESCHHHHHHHHHHHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBC-EEEEECCC-TTTCCCCGGGHHHHCC---TTE
T ss_pred eCChHHHHHHHHHHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCC-eEEEEecC-cccCCcCHHHHHHHhC---CCc
Confidence 9999999999887652 157899999999999987655544 688 89898863 2345679999998885 345
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.+++.++|+||||. +|.++|+++++++|.| ++|.
T Consensus 167 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D--~a~~ 205 (406)
T 3cai_A 167 RLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVD--HSAA 205 (406)
T ss_dssp EEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEE--CTTT
T ss_pred eEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEE--cccc
Confidence 66666889999997 8999999999999999 8886
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.2e-15 Score=130.91 Aligned_cols=164 Identities=10% Similarity=-0.054 Sum_probs=116.9
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhc-CCC----CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAAD-DSL----NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~-~~~----~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|..+|+++.+. ......++.|.+|..+..+. ... ...|....+.++||+++++++ + . ++.|
T Consensus 45 g~~~i~~~~~~----~~~~~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~-~------~~~i-- 110 (401)
T 2bwn_A 45 KQDITVWCGND----YLGMGQHPVVLAAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLH-Q-K------EAAL-- 110 (401)
T ss_dssp EEEEEECSCSC----TTSGGGCHHHHHHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHT-T-C------SEEE--
T ss_pred CCcEEEeeCCC----cccCCCCHHHHHHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHh-C-C------CcEE--
Confidence 55667777653 21233456788887766643 111 123556678999999999886 3 1 2333
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC-CCcEE
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP-DNSVI 159 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~-~~~~i 159 (218)
+.|.|++ +...+..++..+.|||+|++++|+|+++...++..|+ +++.++.. |++.+++.+++.. +++.+
T Consensus 111 ~~~sG~~-a~~~~~~~l~~~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~v~~~-------d~~~le~~l~~~~~~~~~~ 181 (401)
T 2bwn_A 111 VFSSAYN-ANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAG-PKRIFRHN-------DVAHLRELIAADDPAAPKL 181 (401)
T ss_dssp EESCHHH-HHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCC-CEEEECTT-------CHHHHHHHHHHSCTTSCEE
T ss_pred EECCcHH-HHHHHHHHHhcCCCCCEEEECchhhHHHHHHHHHcCC-eEEEEcCC-------CHHHHHHHHHhhccCCceE
Confidence 4666665 6555555442245899999999999999999999999 88888641 5677777776432 34566
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
++.++|+||||. +|.++|++|++++|.| ++|..
T Consensus 182 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D--ea~~~ 219 (401)
T 2bwn_A 182 IAFESVYSMDGDFGPIKEICDIAEEFGALTYID--EVHAV 219 (401)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE--CTTTT
T ss_pred EEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEe--ccccc
Confidence 777899999997 8999999999999999 99983
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=6.5e-16 Score=139.23 Aligned_cols=160 Identities=11% Similarity=0.039 Sum_probs=119.3
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC-
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY- 103 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g- 103 (218)
.+.+.+.++....... ....|....|..++++++.+++.. ..+....++++..+.|.|+++|+.++++++. ++|
T Consensus 111 ~~~~~~~~~~~~~~~~--~~~~~~~~p~~~~le~~l~~~la~-~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~--~~g~ 185 (514)
T 3mad_A 111 HHIAFLNEVYALQSQS--NPLHPDLWPSTAKFEAEVVAMTAH-MLGGDAAGGTVCGTVTSGGTESLLLAMKTYR--DWAR 185 (514)
T ss_dssp HHHHHHHHHHHHHTTC--CTTCTTTCHHHHHHHHHHHHHHHH-HTTGGGGTSCCEEEEESSHHHHHHHHHHHHH--HHHH
T ss_pred CHHHHHHHHHHHHhhc--CCcccccChHHHHHHHHHHHHHHH-HcCCCCccCCcceEEcCcHHHHHHHHHHHHH--HHhh
Confidence 3344555555444322 334566667777888877666633 2222222356655799999999999988773 355
Q ss_pred -------CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----
Q psy6266 104 -------TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ----- 171 (218)
Q Consensus 104 -------d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~----- 171 (218)
|+|+++.|+|+++...++..|+ +++.+++. . .+.+|++.+++.+. +++.+++.++|+||||.
T Consensus 186 ~~~g~~~d~Vi~~~~~~~~~~~~~~~~G~-~v~~v~~~-~-~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~~l~ 259 (514)
T 3mad_A 186 ATKGITAPEAVVPVSAHAAFDKAAQYFGI-KLVRTPLD-A-DYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVDPIP 259 (514)
T ss_dssp HHHCCSSCEEEEETTSCTHHHHHHHHHTC-EEEEECBC-T-TSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCCCHH
T ss_pred hhcCCCCCeEEEeCccchHHHHHHHHcCC-eeEEeeeC-C-CCCCCHHHHHHHhc---cCCEEEEEeCCCCCCccccCHH
Confidence 9999999999999999999999 89999873 3 56789999999885 34566666789999997
Q ss_pred HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 172 QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 172 ~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+|.++|++|++++|.| ++|.++..
T Consensus 260 ~i~~la~~~~i~livD--ea~~~~~~ 283 (514)
T 3mad_A 260 EIAALAAEHGIGCHVD--ACLGGFIL 283 (514)
T ss_dssp HHHHHHHHHTCEEEEE--CTTTTTTH
T ss_pred HHHHHHHHhCCeEEEe--cccccccc
Confidence 8999999999999999 99987643
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-16 Score=135.18 Aligned_cols=146 Identities=11% Similarity=-0.043 Sum_probs=108.0
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcC
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILN 102 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~ 102 (218)
..++++.|++|+.+... ....|....+..+||+++++++.. ++++ +++|.|+++|+.++++++ +.|
T Consensus 9 p~~~~~~v~~a~~~~~~---~~~~~~~~~~~~~l~~~la~~~g~-------~~~~--i~~~~g~t~a~~~~~~~~--~~~ 74 (352)
T 1iug_A 9 PVRLHPKALEALARPQL---HHRTEAAREVFLKARGLLREAFRT-------EGEV--LILTGSGTLAMEALVKNL--FAP 74 (352)
T ss_dssp SCCCCHHHHHHHHSCCC---CTTSHHHHHHHHHHHHHHHHHHTC-------SSEE--EEEESCHHHHHHHHHHHH--CCT
T ss_pred CCCCCHHHHHHhccCCC---CccCHHHHHHHHHHHHHHHHHhCC-------CCce--EEEcCchHHHHHHHHHhc--cCC
Confidence 34678889988766542 122233345779999999988732 2344 469999999999999877 679
Q ss_pred CCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHH
Q psy6266 103 YTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAH 175 (218)
Q Consensus 103 gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~ 175 (218)
||+|++++|+|+++. .+++..|+ +++.++.. . .+.+|++.+++ +++.+++.++||||||. +|.+
T Consensus 75 gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~------~~~~~v~~~~~~nptG~~~~l~~i~~ 145 (352)
T 1iug_A 75 GERVLVPVYGKFSERFYEIALEAGL-VVERLDYP-Y-GDTPRPEDVAK------EGYAGLLLVHSETSTGALADLPALAR 145 (352)
T ss_dssp TCEEEEEECSHHHHHHHHHHHHTTC-EEEEEECC-T-TCCCCTTTSCC------SSCSEEEEESEETTTTEECCHHHHHH
T ss_pred CCeEEEEeCCchhHHHHHHHHHcCC-ceEEEeCC-C-CCCCCHHHHhc------cCCcEEEEEEecCCcceecCHHHHHH
Confidence 999999999999975 44566798 89998873 2 34467665543 23345556789999997 8999
Q ss_pred HhhcC--eEEEeeCCceeec
Q psy6266 176 MVDKH--HVYLLRSGRINMC 193 (218)
Q Consensus 176 l~~~~--~i~ii~D~r~~y~ 193 (218)
+|++| ++++|.| ++|.
T Consensus 146 l~~~~~~~~~li~D--~a~~ 163 (352)
T 1iug_A 146 AFKEKNPEGLVGAD--MVTS 163 (352)
T ss_dssp HHHHHCTTCEEEEE--CTTT
T ss_pred HHHhhCCCCEEEEE--CCcc
Confidence 99999 9999999 7775
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=5.6e-16 Score=133.20 Aligned_cols=174 Identities=13% Similarity=0.096 Sum_probs=119.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC-CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD-SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||++.|.+..+-| .+++.+++|..+.++.. .....| +..+..+||+++++++ + . ++++ ++
T Consensus 25 ~~g~~~ld~~~~~~~~~~g--~~~~~v~~a~~~~~~~~~~~~~~y-~~~~~~~l~~~la~~~-g------~-~~~v--~~ 91 (375)
T 2eh6_A 25 EEGKEYLDFVSGIGVNSLG--HAYPKLTEALKEQVEKLLHVSNLY-ENPWQEELAHKLVKHF-W------T-EGKV--FF 91 (375)
T ss_dssp TTCCEEEESSHHHHTCTTC--BSCHHHHHHHHHHHHHCSCCCTTB-CCHHHHHHHHHHHHTS-S------S-CEEE--EE
T ss_pred CCCCEEEEcCCcccccccC--CCCHHHHHHHHHHHHhccccCccc-CCHHHHHHHHHHHhhc-C------C-CCeE--EE
Confidence 4678889999997422222 26788998877766431 112357 5678999999999875 4 2 2444 69
Q ss_pred eccChhHHHHHHHHHHH-h---cCC-CeEEecCCCchhHHHHHHHhCCCccee----EeccCCcCc---cccHHHHHHHH
Q psy6266 83 TLSGTGALRVGAEFLHR-I---LNY-TTFYYSKPTWENHRLVFLNAGFTEARE----YRYWNPEKR---AVDFTGMYEDL 150 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~-l---~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~----~~~~~~~~~---~~d~~~~~~~l 150 (218)
|.|+++|+.++++++.. . +|| |+|++++|+|+.+...+...++ .++. .+.. .+.. ..|++.+++.+
T Consensus 92 ~~g~t~a~~~~~~~~~~~~~~~~~g~~~vl~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l 169 (375)
T 2eh6_A 92 ANSGTESVEAAIKLARKYWRDKGKNKWKFISFENSFHGRTYGSLSATG-QPKFHKGFEPLV-PGFSYAKLNDIDSVYKLL 169 (375)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCCEEEEEBTCCCCSSHHHHHHCB-CGGGTTTTCSCC-SSEEEECTTCHHHHHTTC
T ss_pred eCchHHHHHHHHHHHHHHhccCCCCCCEEEEECCCcCCCchhhhhhcC-CccccCCCCCCC-CCceeCCCchHHHHHHHh
Confidence 99999999998875322 3 678 9999999999998776655554 3311 1110 0000 14777777666
Q ss_pred hcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 151 VNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 151 ~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+ +++.+++.+++|||||. +|.++|++|++++|.| ++|.++..
T Consensus 170 ~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~D--e~~~~~~~ 220 (375)
T 2eh6_A 170 D---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIID--EVQTGIGR 220 (375)
T ss_dssp C---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred c---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEe--ccccCCCC
Confidence 4 34455555679999996 6889999999999999 99997654
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.1e-15 Score=132.29 Aligned_cols=154 Identities=12% Similarity=0.021 Sum_probs=112.5
Q ss_pred CccCchHHHHHHHHHhhc--CCCCccCcC----CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHH
Q psy6266 23 KPWVLPVVRQAEKELAAD--DSLNHEYLP----VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEF 96 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~--~~~~~~Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~ 96 (218)
..++++.|.+|+.+.+.+ ......|.. .....++|+.+++++ + .++++| +.|.|+++|+.+++++
T Consensus 29 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~------~~~~~v--~~~~g~t~al~~~~~~ 99 (400)
T 3vax_A 29 TTRVDQRVADIVLHWMTAEFGNAGSRHEYGIRAKRGVERAREYLASTV-S------AEPDEL--IFTSGATESNNIALLG 99 (400)
T ss_dssp CSSSCHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHHHHHHHT-T------CCGGGE--EEESCHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHHHHHc-C------CCCCcE--EEeCCHHHHHHHHHHH
Confidence 346788898887776542 001111222 233577788877765 3 234555 5899999999999887
Q ss_pred HHH--hcCCC-eEEecCCCchhHHHHHHH---hCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcH
Q psy6266 97 LHR--ILNYT-TFYYSKPTWENHRLVFLN---AGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170 (218)
Q Consensus 97 l~~--l~~gd-~V~i~~P~y~~y~~~~~~---~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG 170 (218)
+.. ..||| +|++++|.|+++...+.. .|+ +++.++.. +.+.+|++.+++.+. +++.+++.++||||||
T Consensus 100 l~~~~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG 173 (400)
T 3vax_A 100 LAPYGERTGRRHIITSAIEHKAVLEPLEHLAGRGF-EVDFLTPG--PSGRISVEGVMERLR---PDTLLVSLMHVNNETG 173 (400)
T ss_dssp THHHHHHHTCCEEEEETTSCHHHHHHHHHHHTTTC-EEEEECCC--TTCCCCHHHHHTTCC---TTEEEEECCSBCTTTC
T ss_pred HHHhhccCCCCEEEECccccHhHHHHHHHHHhcCC-eEEEEccC--CCCCcCHHHHHHhcC---CCceEEEEECCCCCce
Confidence 621 15899 999999999998766555 488 88888873 245679998887774 4567777889999999
Q ss_pred H-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 171 Q-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 171 ~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
. +|.++|+++++++|.| ++|.
T Consensus 174 ~~~~l~~i~~la~~~~~~li~D--~a~~ 199 (400)
T 3vax_A 174 VIQPVAELAQQLRATPTYLHVD--AAQG 199 (400)
T ss_dssp BBCCHHHHHHHHTTSSCEEEEE--CTTT
T ss_pred eeCcHHHHHHHHHhcCCEEEEE--hhhh
Confidence 7 8999999999999999 8875
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4.5e-15 Score=129.40 Aligned_cols=160 Identities=13% Similarity=0.084 Sum_probs=111.9
Q ss_pred eeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChh
Q psy6266 11 CEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTG 88 (218)
Q Consensus 11 ~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~ 88 (218)
++++|.+ |........+.+.++..... .+...+.|. +..+..+||+.+++++.. ++ .+++.+|++
T Consensus 24 ~~~~~~~-d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~la~~~g~---------~~--~i~~~sG~~ 90 (398)
T 2rfv_A 24 TGALSTP-IFQTSTFVFDSAEQGAARFA-LEESGYIYTRLGNPTTDALEKKLAVLERG---------EA--GLATASGIS 90 (398)
T ss_dssp TCCSSCC-CCCCSBCCCSSHHHHHHHC------CCSBTTTCCHHHHHHHHHHHHHHTC---------SE--EEEESSHHH
T ss_pred CCCcCCC-CcCCCccccCCHHHHHHhhc-CCCCCCceeCCCChHHHHHHHHHHHHhCC---------Cc--EEEECCHHH
Confidence 5777742 22333334455555443211 111234454 456678899988887632 12 246666779
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCchhHHHHH----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 89 ALRVGAEFLHRILNYTTFYYSKPTWENHRLVF----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 89 al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+.++++++ +.+||+|++++|+|+++...+ +..|. +++.++.. |++.+++.++ +++.+++.++
T Consensus 91 a~~~~l~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-------d~~~l~~~i~---~~~~~v~~~~ 157 (398)
T 2rfv_A 91 AITTTLLTL--CQQGDHIVSASAIYGCTHAFLSHSMPKFGI-NVRFVDAA-------KPEEIRAAMR---PETKVVYIET 157 (398)
T ss_dssp HHHHHHHHH--CCTTCEEEEESSSCHHHHHHHHTHHHHTTC-EEEEECTT-------SHHHHHHHCC---TTEEEEEEES
T ss_pred HHHHHHHHH--hCCCCEEEEcCCCcccHHHHHHHHHHHcCC-EEEEeCCC-------CHHHHHHhcC---CCCeEEEEEC
Confidence 999988876 679999999999999998776 77888 88877541 6788888775 3455666689
Q ss_pred CCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++|++++|.| ++|....+.
T Consensus 158 ~~nptG~~~~l~~i~~l~~~~~~~li~D--e~~~~~~~~ 194 (398)
T 2rfv_A 158 PANPTLSLVDIETVAGIAHQQGALLVVD--NTFMSPYCQ 194 (398)
T ss_dssp SBTTTTBCCCHHHHHHHHHHTTCEEEEE--CTTTCTTTC
T ss_pred CCCCCCcccCHHHHHHHHHHcCCEEEEE--CCCcccccC
Confidence 9999997 8999999999999999 999866554
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=7.2e-16 Score=133.20 Aligned_cols=147 Identities=10% Similarity=0.077 Sum_probs=110.2
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEeccChhHHHHHHHHHHHh
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
+++++.|.+|..+... ..|.+ ..+..++|+++++++.. +++ + +++|.|+++|+.++++++ +
T Consensus 28 ~~~~~~v~~a~~~~~~-----~~~~~~~~~~~~~l~~~la~~~g~-------~~~~~--i~~~~g~t~a~~~~~~~~--~ 91 (393)
T 2huf_A 28 SNAPQRVLDAMSRPIL-----GHLHPETLKIMDDIKEGVRYLFQT-------NNIAT--FCLSASGHGGMEATLCNL--L 91 (393)
T ss_dssp CCCCHHHHHHTTSCCC-----CTTSHHHHHHHHHHHHHHHHHHTC-------CCSEE--EEESSCHHHHHHHHHHHH--C
T ss_pred CCCCHHHHHHHHhhhc-----cCCCHHHHHHHHHHHHHHHHHhCC-------CCCcE--EEEcCcHHHHHHHHHHHH--h
Confidence 4678888887655432 12432 36789999999988632 222 3 369999999999998877 6
Q ss_pred cCCCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HH
Q psy6266 101 LNYTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l 173 (218)
.|||+|++++|+|+++. ..++..|+ +++.++.. . .+.+|++.+++.+++. ++.+++.++||||||. +|
T Consensus 92 ~~gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~~i 166 (393)
T 2huf_A 92 EDGDVILIGHTGHWGDRSADMATRYGA-DVRVVKSK-V-GQSLSLDEIRDALLIH--KPSVLFLTQGDSSTGVLQGLEGV 166 (393)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTC-EEEEEECC-T-TCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTTH
T ss_pred CCCCEEEEECCCcchHHHHHHHHHcCC-eeEEEeCC-C-CCCCCHHHHHHHHhcc--CCcEEEEEccCCCccccCCHHHH
Confidence 79999999999998853 34566798 89999873 2 3468999999988641 2334444689999997 79
Q ss_pred HHHhhcCeEEEeeCCceeec
Q psy6266 174 AHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~r~~y~ 193 (218)
.++|++|++++|.| +++.
T Consensus 167 ~~~~~~~~~~li~D--~a~~ 184 (393)
T 2huf_A 167 GALCHQHNCLLIVD--TVAS 184 (393)
T ss_dssp HHHHHHTTCEEEEE--CTTT
T ss_pred HHHHHHcCCEEEEE--cccc
Confidence 99999999999999 6654
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=5.3e-15 Score=129.69 Aligned_cols=151 Identities=13% Similarity=0.045 Sum_probs=99.8
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcC-----C----CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLP-----V----LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAE 95 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~-----~----~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~ 95 (218)
++++.|++|+.+.+.. ...|.. . ....+||+++++++ + .++++| +.|.|+++|+.++++
T Consensus 29 ~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g------~~~~~v--~~~~g~t~a~~~~~~ 96 (432)
T 3a9z_A 29 PLEPEVIQAVTEAMKE---AWGNPSSSYVAGRKAKDIINTARASLAKMI-G------GKPQDI--IFTSGGTESNNLVIH 96 (432)
T ss_dssp CCCHHHHHHHHHHHHH---CCSCTTCSSHHHHHHHHHHHHHHHHHHHHH-T------CCGGGE--EEESCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH---hcCCCccCcHHHHHHHHHHHHHHHHHHHHc-C------CCcCeE--EEeCChHHHHHHHHH
Confidence 6688899888776643 122322 1 12479999999886 3 234554 589999999999888
Q ss_pred HHHH------hcCCCeEEecCCCchhH-----------------HHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhc
Q psy6266 96 FLHR------ILNYTTFYYSKPTWENH-----------------RLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 96 ~l~~------l~~gd~V~i~~P~y~~y-----------------~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 152 (218)
++.. ..+||+|++++|+|+.| ....+..|+ +++.++.. .+.+.+|++.+++.+.
T Consensus 97 ~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~-~v~~v~~~-~~~~~~d~~~l~~~i~- 173 (432)
T 3a9z_A 97 STVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA-EVTFVPVS-KVNGQVEVEDILAAVR- 173 (432)
T ss_dssp HHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC-EEEEECCC-TTTSSCCHHHHHHTCC-
T ss_pred HHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc-EEEEEecC-cccCCcCHHHHHHhcc-
Confidence 7631 14899999999999886 233344688 88888873 2234679999888774
Q ss_pred CCCCcEEEEcccCCCCcHH-----HHHHHhhcCe----------EEEeeCCceeecc
Q psy6266 153 APDNSVIILHACAHNPTAQ-----QVAHMVDKHH----------VYLLRSGRINMCG 194 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~----------i~ii~D~r~~y~~ 194 (218)
+++.+++.++||||||. +|.++|++++ +++|.| ++|..
T Consensus 174 --~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livD--ea~~~ 226 (432)
T 3a9z_A 174 --PTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTD--AAQAL 226 (432)
T ss_dssp --TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEE--CTTTT
T ss_pred --CCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEE--chhhh
Confidence 35567777899999997 7999999999 999999 88864
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=8.2e-16 Score=130.99 Aligned_cols=160 Identities=9% Similarity=-0.118 Sum_probs=117.4
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
++++++.| +. .+++.|++|+.+.. .+.|.. ..+..+||+++++++.. . ...++ ++.|.|
T Consensus 4 ~~~~~~~g----p~---~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~l~~~la~~~g~-~----~~~~~--v~~~~g 64 (366)
T 1m32_A 4 NYLLLTPG----PL---TTSRTVKEAMLFDS-----CTWDDDYNIGVVEQIRQQLTALATA-S----EGYTS--VLLQGS 64 (366)
T ss_dssp -CEECSSS----SC---CCCHHHHHTTCCCC-----CTTSHHHHTTTHHHHHHHHHHHHCS-S----SSEEE--EEEESC
T ss_pred ccccccCC----Cc---CCCHHHHHHHhhhh-----cCCCHHHHHHHHHHHHHHHHHHhCC-C----CcCcE--EEEecC
Confidence 36888888 22 36788887654321 233321 27899999999998731 1 11233 469999
Q ss_pred ChhHHHHHHHHHHHhcCCCeEEecC-CCchh-HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 86 GTGALRVGAEFLHRILNYTTFYYSK-PTWEN-HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd~V~i~~-P~y~~-y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
+++|+.++++++ +.+||+|++++ |+|+. +...++..|+ +++.++.. ..+.+|++.+++.+++. ++..+++.+
T Consensus 65 ~t~a~~~~~~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~l~~~-~~~~~v~~~ 138 (366)
T 1m32_A 65 GSYAVEAVLGSA--LGPQDKVLIVSNGAYGARMVEMAGLMGI-AHHAYDCG--EVARPDVQAIDAILNAD-PTISHIAMV 138 (366)
T ss_dssp HHHHHHHHHHHS--CCTTCCEEEEESSHHHHHHHHHHHHHTC-CEEEEECC--TTSCCCHHHHHHHHHHC-TTCCEEEEE
T ss_pred hHHHHHHHHHHh--cCCCCeEEEEeCCCccHHHHHHHHHhCC-ceEEEeCC--CCCCCCHHHHHHHHhcC-CCeEEEEEe
Confidence 999999998876 57899988775 77775 6677888899 89998873 23568999999999753 233444456
Q ss_pred cCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 164 CAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 164 ~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+|+||||. +|.++|++|++++|.| ++|..
T Consensus 139 ~~~nptG~~~~l~~i~~l~~~~~~~li~D--ea~~~ 172 (366)
T 1m32_A 139 HSETTTGMLNPIDEVGALAHRYGKTYIVD--AMSSF 172 (366)
T ss_dssp SEETTTTEECCHHHHHHHHHHHTCEEEEE--CTTTT
T ss_pred cccCCcceecCHHHHHHHHHHcCCEEEEE--CCccc
Confidence 89999997 8999999999999999 88763
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-15 Score=132.23 Aligned_cols=155 Identities=14% Similarity=0.042 Sum_probs=121.1
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
..|||+.|.+ +.++.|++|..+..+. ..|.+..|..+||+++++++.. . + .+.+.+|+
T Consensus 31 ~~id~~~~~~-------~~~~~v~~a~~~~~~~----~~y~~~~~~~~l~~~la~~~~~-~--------~--~v~~~~Gt 88 (399)
T 2oga_A 31 PFLDLKAAYE-------ELRAETDAAIARVLDS----GRYLLGPELEGFEAEFAAYCET-D--------H--AVGVNSGM 88 (399)
T ss_dssp CSCCHHHHHH-------HTHHHHHHHHHHHHHH----TCCSSSHHHHHHHHHHHHHTTS-S--------E--EEEESCHH
T ss_pred cccccCcCCC-------CCCHHHHHHHHHHHhc----CCCCCchhHHHHHHHHHHHHCC-C--------e--EEEecCHH
Confidence 5788888852 2348888888776643 2587788999999999988632 1 2 24667779
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+|+.++++++. +.+||+|++++|+|+.+...++..|+ +++.++.. ++.+.+|++.+++.+.+ ++.+++ ++|
T Consensus 89 ~a~~~~l~~~~-~~~gd~vl~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~d~~~l~~~i~~---~~~~v~---~~n 159 (399)
T 2oga_A 89 DALQLALRGLG-IGPGDEVIVPSHTYIASWLAVSATGA-TPVPVEPH-EDHPTLDPLLVEKAITP---RTRALL---PVH 159 (399)
T ss_dssp HHHHHHHHHTT-CCTTCEEEEESSSCTHHHHHHHHTTC-EEEEECBC-SSSSSBCHHHHHHHCCT---TEEEEC---CBC
T ss_pred HHHHHHHHHhC-CCCcCEEEECCCccHHHHHHHHHCCC-EEEEEecC-CCCCCcCHHHHHHhcCC---CCeEEE---EeC
Confidence 99998887652 46899999999999999999999999 89988873 33467899999988853 445444 579
Q ss_pred CcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 168 PTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 168 PTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
|||. +|.++|+++++++|.| ++|...
T Consensus 160 ~tG~~~~l~~i~~l~~~~~~~li~D--ea~~~g 190 (399)
T 2oga_A 160 LYGHPADMDALRELADRHGLHIVED--AAQAHG 190 (399)
T ss_dssp GGGCCCCHHHHHHHHHHHTCEECEE--CTTCTT
T ss_pred CcCCccCHHHHHHHHHHcCCEEEEE--Cccccc
Confidence 9997 8999999999999999 888743
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.3e-15 Score=127.21 Aligned_cols=151 Identities=11% Similarity=0.079 Sum_probs=114.6
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCCCC--cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPVLG--LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G--~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
+|..++.++++..+.++. .|.+..| .++||+++++++. . ++ ++.|.|+++|+.++++++. +
T Consensus 7 ~p~~~~~v~~a~~~~~~~-----~~~~~~g~~~~~l~~~la~~~~--~-------~~--v~~~~ggt~al~~~~~~l~-~ 69 (394)
T 1o69_A 7 PPHMGGNELKYIEEVFKS-----NYIAPLGEFVNRFEQSVKDYSK--S-------EN--ALALNSATAALHLALRVAG-V 69 (394)
T ss_dssp -----CCHHHHHHHHHHH-----TTTSCTTHHHHHHHHHHHHHHC--C-------SE--EEEESCHHHHHHHHHHHTT-C
T ss_pred CCCCCHHHHHHHHHHHHc-----CCccCCChHHHHHHHHHHHHhC--C-------Cc--EEEeCCHHHHHHHHHHHcC-C
Confidence 345667888887776643 3777789 9999999999873 2 33 3699999999999888652 4
Q ss_pred cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHH
Q psy6266 101 LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAH 175 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~ 175 (218)
.+||+|++++|+|+++...++..|+ +++.++.. +.+.+|++.+++.+.+...++.+++.+ ||||. +|.+
T Consensus 70 ~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~i~~~~~~~~~v~~~---~~~G~~~~l~~i~~ 143 (394)
T 1o69_A 70 KQDDIVLASSFTFIASVAPICYLKA-KPVFIDCD--ETYNIDVDLLKLAIKECEKKPKALILT---HLYGNAAKMDEIVE 143 (394)
T ss_dssp CTTCEEEEESSSCGGGTHHHHHTTC-EEEEECBC--TTSSBCHHHHHHHHHHCSSCCCEEEEE---CGGGCCCCHHHHHH
T ss_pred CCCCEEEECCCccHHHHHHHHHcCC-EEEEEEeC--CCCCcCHHHHHHHHhcccCCceEEEEE---CCCCChhhHHHHHH
Confidence 6899999999999999999999999 89998873 356789999999887521123333322 38996 8999
Q ss_pred HhhcCeEEEeeCCceeec-cCCCC
Q psy6266 176 MVDKHHVYLLRSGRINMC-GLTTQ 198 (218)
Q Consensus 176 l~~~~~i~ii~D~r~~y~-~l~~~ 198 (218)
+|+++++++|.| ++|. ++.+.
T Consensus 144 l~~~~~~~li~D--ea~~~g~~~~ 165 (394)
T 1o69_A 144 ICKENDIVLIED--AAEALGSFYK 165 (394)
T ss_dssp HHHHTTCEEEEE--CTTCTTCEET
T ss_pred HHHHcCCEEEEE--CcCcccceeC
Confidence 999999999999 8888 65543
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.5e-15 Score=130.56 Aligned_cols=148 Identities=7% Similarity=-0.042 Sum_probs=107.8
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhc
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRIL 101 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~ 101 (218)
..+++.+++++.+. ....|.+ .....++|+.+++++.. +++.+ ++.|.|+++|+.++++++ +.
T Consensus 20 ~~~~~~v~~a~~~~-----~~~~~~~~~~~~~~~l~~~la~~~g~-------~~~~~-~~~~~s~t~al~~~~~~l--~~ 84 (416)
T 3isl_A 20 VEVDPRVLRVMSTP-----VVGQFDPAFTGIMNETMEMLRELFQT-------KNRWA-YPIDGTSRAGIEAVLASV--IE 84 (416)
T ss_dssp CCCCHHHHHHTTSC-----CCCTTSHHHHHHHHHHHHHHHHHTTC-------CCSEE-EEEESCHHHHHHHHHHHH--CC
T ss_pred cCcCHHHHHHhccc-----CCCCccHHHHHHHHHHHHHHHHHhCC-------CCCcE-EEecCcHHHHHHHHHHHh--cC
Confidence 44566776654321 1222332 34467788888876532 23333 347778889999998877 78
Q ss_pred CCCeEEecCCCchh--HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHH
Q psy6266 102 NYTTFYYSKPTWEN--HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVA 174 (218)
Q Consensus 102 ~gd~V~i~~P~y~~--y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~ 174 (218)
|||+|++++|+|++ +...++..|+ +++.++.. . ...+|++.+++.+++. ++.+++.++||||||. +|.
T Consensus 85 ~gd~Vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~~i~ 159 (416)
T 3isl_A 85 PEDDVLIPIYGRFGYLLTEIAERYGA-NVHMLECE-W-GTVFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHPLKAIG 159 (416)
T ss_dssp TTCEEEEEESSHHHHHHHHHHHHTTC-EEEEEECC-T-TCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCHHHH
T ss_pred CCCEEEEecCCcccHHHHHHHHhcCC-eeEEEecC-C-CCCCCHHHHHHHHhhC--CCcEEEEEccCCCCceecCHHHHH
Confidence 99999999999998 7678888999 89999873 2 3567999999999731 2344555689999997 899
Q ss_pred HHhhcCeEEEeeCCceeec
Q psy6266 175 HMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 175 ~l~~~~~i~ii~D~r~~y~ 193 (218)
++|++|++++|.| +++.
T Consensus 160 ~l~~~~~~~li~D--~a~~ 176 (416)
T 3isl_A 160 EACRTEDALFIVD--AVAT 176 (416)
T ss_dssp HHHHHTTCEEEEE--CTTT
T ss_pred HHHHHcCCEEEEE--CCcc
Confidence 9999999999999 6654
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=4.3e-15 Score=129.91 Aligned_cols=179 Identities=11% Similarity=0.049 Sum_probs=122.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC-CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL-NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||++.|....+-| .+++.|.+|..+.++.... ...|.+..|.++||+++++++.+ . .+++| ++
T Consensus 38 ~~g~~~id~~~~~~~~~lg--~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~-----~~~~v--~~ 107 (426)
T 1sff_A 38 VEGREYLDFAGGIAVLNTG--HLHPKVVAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPG-D-----FAKKT--LL 107 (426)
T ss_dssp TTCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSC-S-----SCEEE--EE
T ss_pred CCCCEEEEcccChhhcccC--CCCHHHHHHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCc-c-----cccEE--EE
Confidence 3577788998885322334 2578888888777643111 12578889999999999998732 1 22444 69
Q ss_pred eccChhHHHHHHHHHHH-hcCCCeEEecCCCchhHH-HHHHHhCCCc-------------ceeEeccC---CcCccccHH
Q psy6266 83 TLSGTGALRVGAEFLHR-ILNYTTFYYSKPTWENHR-LVFLNAGFTE-------------AREYRYWN---PEKRAVDFT 144 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~-l~~gd~V~i~~P~y~~y~-~~~~~~g~~~-------------~~~~~~~~---~~~~~~d~~ 144 (218)
|.|+++|+.+++++... ..+| +|++++|+|+.+. ..+...|. + ++.+++.. ...+.+|++
T Consensus 108 ~~g~~~a~~~~~~~a~~~~~~~-~vi~~~p~y~~~~~~~~~~~g~-~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~ 185 (426)
T 1sff_A 108 VTTGSEAVENAVKIARAATKRS-GTIAFSGAYHGRTHYTLALTGK-VNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIA 185 (426)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCC-EEEEETTCCCCSSHHHHHHSSC-CTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHH
T ss_pred eCchHHHHHHHHHHHHHhhCCC-eEEEECCCcCCCchHhhhhcCC-ccccccccCCCCCCcEEeCCCccccccchHHHHH
Confidence 99999999998873211 4555 8999999998754 45666665 3 44455421 011236888
Q ss_pred HHHHHHhcC--CCCc-EEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 145 GMYEDLVNA--PDNS-VIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 145 ~~~~~l~~~--~~~~-~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
.+++.+++. .++. .+++.+++|| ||. +|.++|++|++++|.| ++|.++.+
T Consensus 186 ~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~D--e~~~~~~~ 247 (426)
T 1sff_A 186 SIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIAD--EVQSGAGR 247 (426)
T ss_dssp HHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred HHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEe--chhhccCc
Confidence 888888631 1233 4455567788 993 7899999999999999 99998754
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-15 Score=130.91 Aligned_cols=151 Identities=11% Similarity=-0.028 Sum_probs=110.4
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcC
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILN 102 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~ 102 (218)
..++++.|.+|+.+.... ...+.......++|+.+++++.. . ...+++ +.|.|+++|+. ++..+ +.|
T Consensus 10 p~~~~~~v~~a~~~~~~~---~~~~~~~~~~~~~~~~la~~~~~-~----~~~~~v--~~~~g~t~al~-~~~~~--~~~ 76 (384)
T 3zrp_A 10 PTTIKEDVLVAGLENNVG---FTSKEFVEALAYSLKGLRYVMGA-S----KNYQPL--IIPGGGTSAME-SVTSL--LKP 76 (384)
T ss_dssp CSCCCHHHHHHTTCCSCC---TTSHHHHHHHHHHHHHHHHHHTC-C----TTSEEE--EEESCHHHHHH-HGGGG--CCT
T ss_pred CCCCCHHHHHHhhccccc---cccHHHHHHHHHHHHHHHHHhCC-C----CCCcEE--EEcCCcHHHHH-HHHhh--cCC
Confidence 356788888775543311 11222245678889998887632 1 111443 69999999999 77665 689
Q ss_pred CCeEEecCCCchh--HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHH
Q psy6266 103 YTTFYYSKPTWEN--HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAH 175 (218)
Q Consensus 103 gd~V~i~~P~y~~--y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~ 175 (218)
||+|++++|+|.+ +..+++..|+ +++.++.. . .+.+|++.+++.+.+. ++.+++.++||||||. +|.+
T Consensus 77 gd~vi~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~~i~~ 151 (384)
T 3zrp_A 77 NDKILVVSNGVFGDRWEQIFKRYPV-NVKVLRPS-P-GDYVKPGEVEEEVRKS--EYKLVALTHVETSTGVREPVKDVIN 151 (384)
T ss_dssp TCEEEEECSSHHHHHHHHHHTTSSC-EEEEECCS-T-TCCCCHHHHHHHHHHS--CEEEEEEESEETTTTEECCHHHHHH
T ss_pred CCEEEEecCCcchHHHHHHHHHcCC-cEEEecCC-C-CCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECcHHHHHH
Confidence 9999999999965 5566677898 89888873 2 4568999999999752 3556666789999997 8999
Q ss_pred HhhcCeEEEeeCCceeec
Q psy6266 176 MVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 176 l~~~~~i~ii~D~r~~y~ 193 (218)
+|++|++++|.| +++.
T Consensus 152 l~~~~~~~li~D--~a~~ 167 (384)
T 3zrp_A 152 KIRKYVELIVVD--GVSS 167 (384)
T ss_dssp HHGGGEEEEEEE--CTTT
T ss_pred HHHhcCCEEEEE--Cccc
Confidence 999999999999 7765
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.57 E-value=5e-16 Score=138.98 Aligned_cols=160 Identities=12% Similarity=0.067 Sum_probs=113.9
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHh---hcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELA---ADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~---~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
-+..+|+|++|. ++++ ++++.|.+|..... .+ ...+.|+ ..|.+ +++++.+++.. ..+ . ++ .+
T Consensus 87 ~~~~~i~l~~g~--~~~~--~~~~~i~~a~~~~~~~~~~-~~~~~Y~-~~g~~-~~~~l~~~la~-~~g--~--~~--~i 152 (464)
T 1ibj_A 87 VSTLLVNLDNKF--DPFD--AMSTPLYQTATFKQPSAIE-NGPYDYT-RSGNP-TRDALESLLAK-LDK--A--DR--AF 152 (464)
T ss_dssp HHHHHTCCCCSS--CTTC--CSSCCCCCCSBCCCSSSSC-CCSCSBT-TTCCH-HHHHHHHHHHH-HHT--C--SE--EE
T ss_pred cCCeEEECCCCC--CCCC--CCCccHHhhhhhhhhcccc-cCCcccc-CCCCH-HHHHHHHHHHH-HhC--C--Ce--EE
Confidence 345689999982 3444 66677776644321 11 2356787 56777 67777777643 222 1 23 34
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
++.+|++|+.+++. + +++||+|++++|.|+.|... ++..|+ +++.++. .|++.+++.+. +++
T Consensus 153 ~~~sGt~al~~~l~-~--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~-~v~~v~~-------~d~~~l~~~i~---~~t 218 (464)
T 1ibj_A 153 CFTSGMAALSAVTH-L--IKNGEEIVAGDDVYGGSDRLLSQVVPRSGV-VVKRVNT-------TKLDEVAAAIG---PQT 218 (464)
T ss_dssp EESSHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTSGGGTC-EEEEECT-------TSHHHHHHHCC---SSE
T ss_pred EECCHHHHHHHHHH-H--hCCCCEEEEECCCchhHHHHHHHHHHHcCC-EEEEeCC-------CCHHHHHHHhc---cCc
Confidence 67777888887664 3 67999999999999999764 355688 7877754 17788888774 455
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
.+++.++||||||. +|.++|++|++++|.| ++|..
T Consensus 219 k~v~l~~p~NptG~v~~l~~i~~la~~~gi~livD--ea~~~ 258 (464)
T 1ibj_A 219 KLVWLESPTNPRQQISDIRKISEMAHAQGALVLVD--NSIMS 258 (464)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEE--CTTTC
T ss_pred eEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEE--CCCcc
Confidence 66667899999997 8999999999999999 88864
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-15 Score=131.19 Aligned_cols=144 Identities=10% Similarity=-0.015 Sum_probs=114.9
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
+...+.++++..+.... ..|.+..+..+||+++++++.. ++ ++.|.||++|+.+++.++. +.+|
T Consensus 13 ~~~~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~la~~~~~---------~~--~i~~~sgt~al~~~l~~l~-~~~g 76 (373)
T 3frk_A 13 DEIEYEIKFKFEEIYKR----NWFILGDEDKKFEQEFADYCNV---------NY--CIGCGNGLDALHLILKGYD-IGFG 76 (373)
T ss_dssp HHHHHHHHHHHHHHHHH----TCCSSSHHHHHHHHHHHHHHTS---------SE--EEEESCHHHHHHHHHHHTT-CCTT
T ss_pred CCCCHHHHHHHHHHHHC----CCccCCchHHHHHHHHHHHhCC---------Ce--EEEeCCHHHHHHHHHHHcC-CCCc
Confidence 35567788887776643 2477888999999999998743 22 3588899999998887652 4689
Q ss_pred CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhh
Q psy6266 104 TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVD 178 (218)
Q Consensus 104 d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~ 178 (218)
|+|++++|+|+++...++..|+ +++.++.. .+.+.+|++.+++.+. +++.+++ ++||||. +|.++|+
T Consensus 77 d~Vi~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~d~~~l~~~l~---~~~~~v~---~~n~~G~~~~l~~i~~l~~ 148 (373)
T 3frk_A 77 DEVIVPSNTFIATALAVSYTGA-KPIFVEPD-IRTYNIDPSLIESAIT---EKTKAII---AVHLYGQPADMDEIKRIAK 148 (373)
T ss_dssp CEEEEETTSCTHHHHHHHHHSC-EEEEECEE-TTTTEECGGGTGGGCC---TTEEEEE---EECCTTCCCCHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHcCC-EEEEEecc-ccccCcCHHHHHHhcC---CCCeEEE---EECCCcCcccHHHHHHHHH
Confidence 9999999999999999999999 99999874 3456789888887764 3455554 6889997 8999999
Q ss_pred cCeEEEeeCCceeec
Q psy6266 179 KHHVYLLRSGRINMC 193 (218)
Q Consensus 179 ~~~i~ii~D~r~~y~ 193 (218)
++++++|.| ++|.
T Consensus 149 ~~~~~li~D--~a~~ 161 (373)
T 3frk_A 149 KYNLKLIED--AAQA 161 (373)
T ss_dssp HHTCEEEEE--CTTC
T ss_pred HcCCEEEEE--CCcc
Confidence 999999999 7776
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.5e-15 Score=127.42 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=113.5
Q ss_pred CCccCchHHHHHHHHHhhcCCCCccCcC-CCCcHHHHHHH-HHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH
Q psy6266 22 CKPWVLPVVRQAEKELAADDSLNHEYLP-VLGLESFSSAA-TRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR 99 (218)
Q Consensus 22 ~~~~~~~~v~~a~~~~~~~~~~~~~Y~~-~~G~~~lr~ai-a~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~ 99 (218)
+++++++.+++|..++++. +. |.+ .....+|++++ ++++. . .+. ++.|.+|+.|+.+++.++.
T Consensus 10 p~~~~~~~i~~a~~~~~~~--~~--~~~~~~~~~~l~~~~~a~~~g--~------~~~--~v~~~sgt~al~~al~~l~- 74 (377)
T 3ju7_A 10 ASTVPVIEYLDELKEIDAS--HI--YTNYGPINQRFEQTIMSGFFQ--N------RGA--VTTVANATLGLMAAIQLKK- 74 (377)
T ss_dssp CCCCCGGGGHHHHHHHHHH--TC--CSSSCHHHHHHHHHHHHHTST--T------CSE--EEEESCHHHHHHHHHHHHS-
T ss_pred CCCCCcHHHHHHHHHHHHc--CC--cccCCHHHHHHHHHHHHHHhC--C------CCe--EEEeCCHHHHHHHHHHHcC-
Confidence 4457788889888887754 22 443 34579999999 87763 1 122 3588899999998877642
Q ss_pred hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHH
Q psy6266 100 ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVA 174 (218)
Q Consensus 100 l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~ 174 (218)
+.|||+|++++|+|+.+...++..|+ +++.++.. .+.+.+|++.+++++.+..+++++++ |+||||. +|.
T Consensus 75 ~~~Gd~Vi~~~~~~~~~~~~~~~~G~-~~~~v~~~-~~~~~~d~~~l~~~i~~~~~~tk~v~---~~~~~G~~~~~~~i~ 149 (377)
T 3ju7_A 75 RKKGKYALMPSFTFPATPLAAIWCGL-EPYFIDIS-IDDWYMDKTVLWDKIEELKEEVAIVV---PYATFGSWMNLEEYE 149 (377)
T ss_dssp CTTCCEEEEESSSCTHHHHHHHHTTC-EEEEECBC-TTTCSBCHHHHHHHHHHHGGGEEEEC---CBCGGGBCCCCHHHH
T ss_pred CCCcCEEEECCCCcHHHHHHHHHcCC-EEEEEecC-CccCCcCHHHHHHHHhcCCCCceEEE---EECCCCCccCHHHHH
Confidence 57999999999999999999999999 99999873 34578899999998832111255554 6889997 899
Q ss_pred HHhhcCeEEEeeCCceeec
Q psy6266 175 HMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 175 ~l~~~~~i~ii~D~r~~y~ 193 (218)
++|+ |++++|+| ++++
T Consensus 150 ~la~-~~~~vi~D--~a~a 165 (377)
T 3ju7_A 150 ELEK-KGVPVVVD--AAPG 165 (377)
T ss_dssp HHHH-TTCCBEEE--CTTC
T ss_pred HHHh-cCCEEEEE--CCCc
Confidence 9999 99999999 6654
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.5e-14 Score=125.20 Aligned_cols=150 Identities=16% Similarity=0.104 Sum_probs=112.3
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCC----cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLG----LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR 99 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~ 99 (218)
++.++.+++|..+.++. .....|.+..| ..+|++.+++++ + . + + .+.+.+|++|+.++++++.
T Consensus 12 ~~~~~~~~~a~~~~~~~-~~~~~~~~~~g~~~l~~~l~~~la~~~-g-~-----~--~--~i~~~~gt~al~~~~~~~~- 78 (418)
T 2c81_A 12 PQHSDRTRRKIEEVFQS-NRWAISGYWTGEESMERKFAKAFADFN-G-V-----P--Y--CVPTTSGSTALMLALEALG- 78 (418)
T ss_dssp SCCCHHHHHHHHHHHHH-TCCSTTSBCCSSCCHHHHHHHHHHHHH-T-C-----S--E--EEEESCHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHHhc-CCccccCcccCCHHHHHHHHHHHHHHh-C-C-----C--c--EEEeCCHHHHHHHHHHHcC-
Confidence 34578899988877754 22334888889 566666666554 2 1 1 2 2456667899998887652
Q ss_pred hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHH
Q psy6266 100 ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVA 174 (218)
Q Consensus 100 l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~ 174 (218)
+.+||+|++++|+|+.+...++..|+ +++.++.. .+.+.+|++.+++.+. +++.+++. +||||. +|.
T Consensus 79 ~~~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~~---~~~~G~~~~~~~i~ 150 (418)
T 2c81_A 79 IGEGDEVIVPSLTWIATATAVLNVNA-LPVFVDVE-ADTYCIDPQLIKSAIT---DKTKAIIP---VHLFGSMANMDEIN 150 (418)
T ss_dssp CCTTCEEEEESSSCTHHHHHHHHTTC-EEEEECBC-TTTCSBCHHHHGGGCC---TTEEEECC---BCCTTCCCCHHHHH
T ss_pred CCCcCEEEECCCccHhHHHHHHHcCC-EEEEEecC-CCCCCcCHHHHHHhhC---CCCeEEEE---eCCcCCcccHHHHH
Confidence 46899999999999999999999999 89998873 3356789998887774 34555543 569997 899
Q ss_pred HHhhcCeEEEeeCCceeeccCC
Q psy6266 175 HMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 175 ~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
++|+++++++|.| ++|..+.
T Consensus 151 ~~~~~~~~~li~D--~a~~~~~ 170 (418)
T 2c81_A 151 EIAQEHNLFVIED--CAQSHGS 170 (418)
T ss_dssp HHHHHTTCEEEEE--CTTCTTC
T ss_pred HHHHHCCCEEEEE--CcccccC
Confidence 9999999999999 8888764
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3e-15 Score=128.91 Aligned_cols=144 Identities=9% Similarity=0.030 Sum_probs=115.5
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
++.++.++++..+.... ..|.+..+..+||+++++++.. ++ ++.|.||++|+.+++.++. +.+|
T Consensus 12 ~~~~~~v~~a~~~~~~~----~~~~~~~~~~~l~~~la~~~~~---------~~--~~~~~sGt~al~~al~~~~-~~~g 75 (367)
T 3nyt_A 12 ARIKDKIDAGIQRVLRH----GQYILGPEVTELEDRLADFVGA---------KY--CISCANGTDALQIVQMALG-VGPG 75 (367)
T ss_dssp HHHHHHHHHHHHHHHHH----CCCSSCHHHHHHHHHHHHHHTC---------SE--EEEESCHHHHHHHHHHHTT-CCTT
T ss_pred cccCHHHHHHHHHHHhc----CCccCChHHHHHHHHHHHHhCC---------Cc--EEEeCCHHHHHHHHHHHhC-CCCc
Confidence 35577888887776643 2577888999999999998743 12 3588999999998887652 4789
Q ss_pred CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhh
Q psy6266 104 TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVD 178 (218)
Q Consensus 104 d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~ 178 (218)
|+|++++|+|+.+...++..|+ +++.++.. .+.+.+|++.+++.+. +++.+++ |+||||. +|.++|+
T Consensus 76 d~Vi~~~~~~~~~~~~~~~~G~-~~~~~~~~-~~~~~~d~~~l~~~i~---~~~~~v~---~~~~~G~~~~~~~i~~la~ 147 (367)
T 3nyt_A 76 DEVITPGFTYVATAETVALLGA-KPVYVDID-PRTYNLDPQLLEAAIT---PRTKAII---PVSLYGQCADFDAINAIAS 147 (367)
T ss_dssp CEEEEESSSCTHHHHHHHHTTC-EEEEECBC-TTTCSBCGGGTGGGCC---TTEEEEC---CBCGGGCCCCHHHHHHHHH
T ss_pred CEEEECCCccHHHHHHHHHcCC-EEEEEecC-CccCCcCHHHHHHhcC---cCCcEEE---eeCCccChhhHHHHHHHHH
Confidence 9999999999999999999999 99999873 4446789888887773 4455554 7899997 8999999
Q ss_pred cCeEEEeeCCceeec
Q psy6266 179 KHHVYLLRSGRINMC 193 (218)
Q Consensus 179 ~~~i~ii~D~r~~y~ 193 (218)
++++++|.| ++|.
T Consensus 148 ~~~~~li~D--~a~~ 160 (367)
T 3nyt_A 148 KYGIPVIED--AAQS 160 (367)
T ss_dssp HTTCCBEEE--CTTT
T ss_pred HcCCEEEEE--Cccc
Confidence 999999999 8875
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.7e-15 Score=128.28 Aligned_cols=149 Identities=13% Similarity=0.057 Sum_probs=108.1
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
...+++.|.+|+.+.. ..+ |.+ .....++|+.+++++.. . .+++ +++|.|+++|+.++++++ +
T Consensus 31 p~~~~~~v~~a~~~~~----~~~-~~~~~~~~~~~l~~~la~~~~~-~-----~~~~--v~~~~gg~~al~~~~~~~--~ 95 (393)
T 3kgw_A 31 PSNLAPRVLAAGSLRM----IGH-MQKEMLQIMEEIKQGIQYVFQT-R-----NPLT--LVVSGSGHCAMETALFNL--L 95 (393)
T ss_dssp CCCCCHHHHHHTTCCC----CCT-TSHHHHHHHHHHHHHHHHHHTC-C-----CSEE--EEESCCTTTHHHHHHHHH--C
T ss_pred CCCCCHHHHHHhcccc----cCc-ccHHHHHHHHHHHHHHHHHhCC-C-----CCcE--EEEeCCcHHHHHHHHHhc--C
Confidence 3456788887654321 112 222 24456888888877632 1 1222 468999999999998877 7
Q ss_pred cCCCeEEecCCCchh--HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HH
Q psy6266 101 LNYTTFYYSKPTWEN--HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~--y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l 173 (218)
+|||+|+++.|+|.. +...++..|+ +++.++.. . ...+|++.+++.+++. ++.+++.++||||||. +|
T Consensus 96 ~~gd~vl~~~~~~~~~~~~~~~~~~g~-~~~~~~~~-~-~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~~i 170 (393)
T 3kgw_A 96 EPGDSFLTGTNGIWGMRAAEIADRIGA-RVHQMIKK-P-GEHYTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQPLDGF 170 (393)
T ss_dssp CTTCEEEEEESSHHHHHHHHHHHHTTC-EEEEEECC-T-TCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTTH
T ss_pred CCCCEEEEEeCCchhHHHHHHHHHcCC-ceEEEeCC-C-CCCCCHHHHHHHHhhC--CCcEEEEeccCCcchhhccHHHH
Confidence 899999999998753 3567788898 89999873 2 3468999999999741 2334455678999998 89
Q ss_pred HHHhhcCeEEEeeCCceeec
Q psy6266 174 AHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~r~~y~ 193 (218)
.++|++|++++|.| +++.
T Consensus 171 ~~l~~~~~~~li~D--e~~~ 188 (393)
T 3kgw_A 171 GELCHRYQCLLLVD--SVAS 188 (393)
T ss_dssp HHHHHHTTCEEEEE--CTTT
T ss_pred HHHHHHcCCEEEEE--CCcc
Confidence 99999999999999 7765
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.5e-15 Score=128.74 Aligned_cols=148 Identities=7% Similarity=-0.045 Sum_probs=108.9
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhc
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRIL 101 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~ 101 (218)
..+++.|.+|+.+.. ...|.+ .....++|+.+++++.. +.+++ ++.|.|+++|+.++++++ +.
T Consensus 22 ~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~la~~~~~-------~~~~~-v~~~~sgt~al~~~~~~~--~~ 86 (411)
T 3nnk_A 22 INADPRVLRAMSSQL-----IGQYDPAMTHYMNEVMALYRGVFRT-------ENRWT-MLVDGTSRAGIEAILVSA--IR 86 (411)
T ss_dssp CCCCHHHHHHHTSCC-----CCTTCHHHHHHHHHHHHHHHHHHTC-------CCSEE-EEEESCHHHHHHHHHHHH--CC
T ss_pred CCCCHHHHHHhhccc-----cccccHHHHHHHHHHHHHHHHHhCC-------CCCcE-EEECCCcHHHHHHHHHHh--cC
Confidence 456788887654321 112222 13347778888777632 22332 457778899999998877 78
Q ss_pred CCCeEEecCCCchh--HHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHH
Q psy6266 102 NYTTFYYSKPTWEN--HRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVA 174 (218)
Q Consensus 102 ~gd~V~i~~P~y~~--y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~ 174 (218)
|||+|++++|+|++ +...++..|+ +++.++. .+.+.+|++.+++.+.+. ++.+++.++||||||. +|.
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~--~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~l~~i~ 161 (411)
T 3nnk_A 87 PGDKVLVPVFGRFGHLLCEIARRCRA-EVHTIEV--PWGEVFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQPLAELG 161 (411)
T ss_dssp TTCEEEEEECSHHHHHHHHHHHHTTC-EEEEEEC--CTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTTHH
T ss_pred CCCEEEEecCCchHHHHHHHHHHcCC-eEEEEec--CCCCCCCHHHHHHHHhhC--CCeEEEEeCCCCCcceeccHHHHH
Confidence 99999999999987 8888999999 8999987 334567999999998742 2334444678999998 899
Q ss_pred HHhhcCeEEEeeCCceeec
Q psy6266 175 HMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 175 ~l~~~~~i~ii~D~r~~y~ 193 (218)
++|++|++++|.| +++.
T Consensus 162 ~l~~~~~~~li~D--ea~~ 178 (411)
T 3nnk_A 162 EICRRYDALFYTD--ATAS 178 (411)
T ss_dssp HHHHHHTCEEEEE--CTTT
T ss_pred HHHHHcCCEEEEE--CCcc
Confidence 9999999999999 6654
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.4e-14 Score=125.49 Aligned_cols=175 Identities=11% Similarity=0.005 Sum_probs=117.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC-CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL-NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||++.|.+..+-| ++++.|++|..+.++.... ...| +.....+|++++++++ + ..++++ +.
T Consensus 42 ~~g~~~ld~~~~~~~~~~g--~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-~------~~~~~v--~~ 109 (395)
T 1vef_A 42 AEGNEYIDCVGGYGVANLG--HGNPEVVEAVKRQAETLMAMPQTL-PTPMRGEFYRTLTAIL-P------PELNRV--FP 109 (395)
T ss_dssp TTSCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHHHCCCCCTTS-CCHHHHHHHHHHHHTS-C------TTEEEE--EE
T ss_pred CCCCEEEEccCccccccCC--CCCHHHHHHHHHHHHhCCCCcccc-CCHHHHHHHHHHHHhc-C------CCcCEE--EE
Confidence 4577889999885322334 3688899888776654111 1124 4556677888887764 2 223444 69
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchh-HHHHHHHhCCCccee---EeccCCcC---ccccHHHHHHHHhcCCC
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWEN-HRLVFLNAGFTEARE---YRYWNPEK---RAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~-y~~~~~~~g~~~~~~---~~~~~~~~---~~~d~~~~~~~l~~~~~ 155 (218)
|.|+++|+.++++++..+.+||+|++++|+|+. +...+...|. +++. .|.. .+. ...|++.+++.+. +
T Consensus 110 ~~gg~~a~~~al~~~~~~~~~~~vi~~~~~y~~~~~~~~~~~g~-~~~~~~~~p~~-~~~~~~~~~d~~~l~~~i~---~ 184 (395)
T 1vef_A 110 VNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTWE-PKYREPFLPLV-EPVEFIPYNDVEALKRAVD---E 184 (395)
T ss_dssp ESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCCC-HHHHGGGCSCS-SCEEEECTTCHHHHHHHCC---T
T ss_pred cCcHHHHHHHHHHHHHHHhCCCeEEEEcCCcCCCchhhhhhcCC-cccccccCCCC-CCeeEeCCCcHHHHHHHhc---c
Confidence 999999999988765323579999999999965 5556666676 5321 1211 110 0147888888875 3
Q ss_pred CcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 156 NSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
++.+++.+.++||||. +|.++|++|++++|.| ++|.++.+
T Consensus 185 ~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~D--ea~~~~~~ 233 (395)
T 1vef_A 185 ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILD--EIQTGMGR 233 (395)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred CEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEE--ecccCCcc
Confidence 4455555666889995 6889999999999999 99998643
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-15 Score=128.16 Aligned_cols=148 Identities=9% Similarity=-0.026 Sum_probs=110.1
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCc-CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYL-PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILN 102 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~-~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~ 102 (218)
.++++.|++|..+... .+.|. ...+..++|+++++++.. . .++++ ++.|.|+++|+.++++++ + .
T Consensus 9 ~~~~~~v~~a~~~~~~----~~~~~~~~~~~~~l~~~la~~~g~-~----~~~~~--v~~t~g~t~a~~~~~~~~--~-~ 74 (353)
T 2yrr_A 9 TPIPERVQKALLRPMR----GHLDPEVLRVNRAIQERLAALFDP-G----EGALV--AALAGSGSLGMEAGLANL--D-R 74 (353)
T ss_dssp CCCCHHHHGGGGSCCC----CTTCHHHHHHHHHHHHHHHHHHCC-C----TTCEE--EEESSCHHHHHHHHHHTC--S-C
T ss_pred CCCCHHHHHHHhcccc----cccCHHHHHHHHHHHHHHHHHhCC-C----CCCce--EEEcCCcHHHHHHHHHHh--c-C
Confidence 4668888887655442 13332 235689999999998732 1 12344 368999999999888765 3 3
Q ss_pred CCeEEecCCCchhH--HHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHH
Q psy6266 103 YTTFYYSKPTWENH--RLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAH 175 (218)
Q Consensus 103 gd~V~i~~P~y~~y--~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~ 175 (218)
|+|++++|.|+++ ...++..|+ +++.++.. . .+.+|++.+++.+++. ++.+++.++|+||||. +|.+
T Consensus 75 -d~vl~~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~-~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~~~~i~~ 148 (353)
T 2yrr_A 75 -GPVLVLVNGAFSQRVAEMAALHGL-DPEVLDFP-P-GEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNPAEAIGA 148 (353)
T ss_dssp -CCEEEEECSHHHHHHHHHHHHTTC-CEEEEECC-T-TSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECCHHHHHH
T ss_pred -CcEEEEcCCCchHHHHHHHHHcCC-ceEEEeCC-C-CCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecCHHHHHH
Confidence 9999999999986 345577899 89999873 2 3568999999988742 3334555789999997 8999
Q ss_pred HhhcCeEEEeeCCceeec
Q psy6266 176 MVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 176 l~~~~~i~ii~D~r~~y~ 193 (218)
+|+++++++|.| ++|.
T Consensus 149 l~~~~~~~li~D--~a~~ 164 (353)
T 2yrr_A 149 LAKEAGALFFLD--AVTT 164 (353)
T ss_dssp HHHHHTCEEEEE--CTTT
T ss_pred HHHHcCCeEEEE--cCcc
Confidence 999999999999 8885
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=8.1e-15 Score=131.28 Aligned_cols=159 Identities=12% Similarity=0.046 Sum_probs=117.0
Q ss_pred CchHHHHHHHHHhhc-C-CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh---
Q psy6266 26 VLPVVRQAEKELAAD-D-SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI--- 100 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~-~-~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l--- 100 (218)
..+.+.++..++... . .....|....|..++++.+.+++.. ..+....++.+ ++|.|+++|+.++++++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~la~-~~g~~~~~~~~--~~~~ggt~a~~~a~~a~~~~~~~ 152 (497)
T 3mc6_A 76 GGDDLIHLQTIAYEKYCVANQLHPDVFPAVRKMESEVVSMVLR-MFNAPSDTGCG--TTTSGGTESLLLACLSAKMYALH 152 (497)
T ss_dssp CCHHHHHHHHHHHHHTSSCBTTCTTTCHHHHHHHHHHHHHHHH-HTTCCTTTCCE--EEESSHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhcCCCCcccChHHHHHHHHHHHHHHH-HhCCCCCCCeE--EEcCcHHHHHHHHHHHHHHHHHh
Confidence 345666665554432 0 1234566677888888888777633 22221223443 69999999999988876321
Q ss_pred cCC---CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----H
Q psy6266 101 LNY---TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----Q 172 (218)
Q Consensus 101 ~~g---d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~ 172 (218)
.+| |+|+++.|+|+++...++..|+ +++.++.. .+.+.+|++.+++.+. +++.+++.++|+||||. +
T Consensus 153 ~~g~~~~~Vi~~~~~h~~~~~~~~~~G~-~~~~v~~~-~~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~l~~ 227 (497)
T 3mc6_A 153 HRGITEPEIIAPVTAHAGFDKAAYYFGM-KLRHVELD-PTTYQVDLGKVKKFIN---KNTVLLVGSAPNFPHGIADDIEG 227 (497)
T ss_dssp HSCCSSCEEEEETTSCHHHHHHHHHSCC-EEEEECBC-TTTCSBCTTTTGGGCC---SSEEEEEEETTCTTTCCCCSCTT
T ss_pred cCCCCCceEEEeCCccHHHHHHHHHcCC-eEEEEecC-cccCcCCHHHHHHHHh---hCCEEEEEECCCCCCCcCCCHHH
Confidence 146 9999999999999999999999 99999873 3356789998888775 34566777899999998 7
Q ss_pred HHHHhhcCeEEEeeCCceeecc
Q psy6266 173 VAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 173 l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
|.++|++|+++++.| ++|.+
T Consensus 228 i~~la~~~g~~livD--~a~~~ 247 (497)
T 3mc6_A 228 LGKIAQKYKLPLHVD--SCLGS 247 (497)
T ss_dssp TTTHHHHTTCCEEEE--TTTTH
T ss_pred HHHHHHHhCCEEEEE--Ccchh
Confidence 999999999999999 88864
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=128.86 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=114.5
Q ss_pred CCCceeeeeeeE-EeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIHCCEIRNA-YRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~-~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.|..+|+|+.|. |-|.....++ +.|++|..+.+.. ....|++..|..+||+++++++.. ++ ++.|
T Consensus 30 ~g~~~~~~~~~~~ylD~~~~~~~-~~v~~a~~~~l~~--~~~~y~~~~~~~~l~~~la~~~~~---------~~--v~~t 95 (467)
T 2oqx_A 30 SGMNPFLLDSEDVFIDLLTDSGT-GAVTQSMQAAMMR--GDEAYSGSRSYYALAESVKNIFGY---------QY--TIPT 95 (467)
T ss_dssp TTSCGGGSCGGGCSEECSCCSSC-SCCCHHHHHHTTS--CCCCSSSCHHHHHHHHHHHHHHCC---------SE--EEEE
T ss_pred cCCCceeccCCCeeEecccCCCc-HHHHHHHHHHhcc--CcceeccCchhHHHHHHHHHHhCc---------Cc--EEEc
Confidence 466677777773 2222223344 7777777666543 345799999999999999998732 23 3589
Q ss_pred ccChhHHHHHHHHHHHhcC-----C----CeEEecCCCchhHHHHHHHhCCCcceeEecc---CC-----cCccccHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILN-----Y----TTFYYSKPTWENHRLVFLNAGFTEAREYRYW---NP-----EKRAVDFTGM 146 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~-----g----d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~---~~-----~~~~~d~~~~ 146 (218)
.||++|+.++++++ +++ | |+|++..+.|++|.......|+ .+...... .. ..+.+|++.+
T Consensus 96 ~~gt~A~~~al~~~--~~~~~~~~G~~~~d~Ii~~~~h~~t~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~L 172 (467)
T 2oqx_A 96 HQGRGAEQIYIPVL--IKKREQEKGLDRSKMVAFSNYFFDTTQGHSQINGC-TVRNVYIKEAFDTGVRYDFKGNFDLEGL 172 (467)
T ss_dssp C--CCSHHHHHHHH--HHHHHHHHCCCTTTCEEEESSCCHHHHHHHHHTTC-EEEECBCTTTTCTTSCCTTTTCBCHHHH
T ss_pred CCcHHHHHHHHHHH--hccccccCCCCccceEEecccccccchhhhhccCc-ceeeccccccccCCCCCCccCCcCHHHH
Confidence 99999999998877 457 8 9988887777877777777776 55432110 01 1235699999
Q ss_pred HHHHhcCC-CCcEEEEcccCCCCc-HH--------HHHHHhhcCeEEEeeCC
Q psy6266 147 YEDLVNAP-DNSVIILHACAHNPT-AQ--------QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 147 ~~~l~~~~-~~~~iil~~~p~NPT-G~--------~l~~l~~~~~i~ii~D~ 188 (218)
++.+++.. +++.+++.++||||| |. +|.++|++|++++|+|+
T Consensus 173 e~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~ 224 (467)
T 2oqx_A 173 ERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDS 224 (467)
T ss_dssp HHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 99987421 134445556899998 43 79999999999999994
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3.3e-14 Score=122.85 Aligned_cols=143 Identities=10% Similarity=-0.015 Sum_probs=112.3
Q ss_pred CchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCe
Q psy6266 26 VLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTT 105 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~ 105 (218)
.++.+.+|..+.++. . .|.+..|..+||+++++++.. ++ ++.|.|+++|+.++++++. +.|||+
T Consensus 18 ~~~~~~~a~~~~~~~--~--~~~~~~~~~~l~~~la~~~~~---------~~--~~~~~~gt~al~~~~~~~~-~~~gd~ 81 (393)
T 1mdo_A 18 MGAEELAAVKTVLDS--G--WITTGPKNQELEAAFCRLTGN---------QY--AVAVSSATAGMHIALMALG-IGEGDE 81 (393)
T ss_dssp CCHHHHHHHHHHHHH--T--CCSSSHHHHHHHHHHHHHHCC---------SE--EEEESCHHHHHHHHHHHTT-CCTTCE
T ss_pred CCHHHHHHHHHHHhc--C--CcCCChHHHHHHHHHHHHhCC---------Cc--EEEecChHHHHHHHHHHcC-CCCCCE
Confidence 346777887776643 1 355678999999999998743 13 3588999999999888652 468999
Q ss_pred EEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcC
Q psy6266 106 FYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKH 180 (218)
Q Consensus 106 V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~ 180 (218)
|++++|+|+++...++..|+ +++.++.. ++.+.+|++.+++.+.+ ++.+++. .||||. +|.++|+++
T Consensus 82 Vl~~~~~~~~~~~~~~~~g~-~~~~v~~~-~~~~~~d~~~l~~~l~~---~~~~v~~---~~~~G~~~~~~~i~~l~~~~ 153 (393)
T 1mdo_A 82 VITPSMTWVSTLNMIVLLGA-NPVMVDVD-RDTLMVTPEHIEAAITP---QTKAIIP---VHYAGAPADLDAIYALGERY 153 (393)
T ss_dssp EEEESSSCHHHHHHHHHTTC-EEEEECBC-TTTCCBCHHHHHHHCCT---TEEEECC---BCGGGCCCCHHHHHHHHHHH
T ss_pred EEeCCCccHhHHHHHHHCCC-EEEEEecc-CCcCCCCHHHHHHhcCC---CceEEEE---eCCCCCcCCHHHHHHHHHHc
Confidence 99999999999999999999 89999873 33456899999988853 3444443 358996 899999999
Q ss_pred eEEEeeCCceeecc
Q psy6266 181 HVYLLRSGRINMCG 194 (218)
Q Consensus 181 ~i~ii~D~r~~y~~ 194 (218)
++++|.| ++|..
T Consensus 154 ~~~li~D--~a~~~ 165 (393)
T 1mdo_A 154 GIPVIED--AAHAT 165 (393)
T ss_dssp TCCBCEE--CTTCT
T ss_pred CCeEEEE--Ccccc
Confidence 9999999 88873
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.3e-14 Score=124.39 Aligned_cols=149 Identities=9% Similarity=-0.016 Sum_probs=103.0
Q ss_pred CCC-ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGE-IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~-~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
+|. ++||++.|. |++++++.|++|+. . ...|... ...+++..+++ ++ .. +++++ ++|
T Consensus 25 ~g~~~v~~~~~~~-----~~~~~~~~v~~a~~----~---~~~~~~~--~~~~~~~~a~~-~g-~~----~~~~~--~~~ 82 (374)
T 2aeu_A 25 KGRDALYDLSGLS-----GGFLIDEKDKALLN----T---YIGSSYF--AEKVNEYGLKH-LG-GD----ENDKC--VGF 82 (374)
T ss_dssp TCGGGCEECSSCC-----CCCCCCHHHHHHHT----S---TTHHHHH--HHHHHHHHHHH-HT-CC----TTEEE--EEE
T ss_pred cCccceeeecccC-----CCCCCCHHHHHHHH----H---hcCchHH--HHHHHHHHHHH-hC-CC----CcceE--EEE
Confidence 577 899999983 56788999998764 1 1112110 02333333333 34 21 22443 688
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH---HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEE-
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL---VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVI- 159 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~i- 159 (218)
.|+++|+.++++++ |||+|++++|+|+++.. .++..|+ +++.+ .|++.+++. . +++.+
T Consensus 83 ~ggt~a~~~~~~~~----~gd~Vl~~~~~y~~~~~~~~~~~~~g~-~~~~v---------~d~~~l~~~-~---~~~~~~ 144 (374)
T 2aeu_A 83 NRTSSAILATILAL----KPKKVIHYLPELPGHPSIERSCKIVNA-KYFES---------DKVGEILNK-I---DKDTLV 144 (374)
T ss_dssp SSHHHHHHHHHHHH----CCSEEEEECSSSSCCTHHHHHHHHTTC-EEEEE---------SCHHHHHTT-C---CTTEEE
T ss_pred cChHHHHHHHHHhC----CCCEEEEecCCCCccHHHHHHHHHcCc-EEEEe---------CCHHHHHhc-C---CCccEE
Confidence 99999999887754 89999999998887554 5677788 77666 156666554 2 34555
Q ss_pred EEcccCCCCcH-H-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 160 ILHACAHNPTA-Q-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 160 il~~~p~NPTG-~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
++.++|||||| . +|.++|++|++++|.| ++|..+
T Consensus 145 v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~D--e~~~~~ 184 (374)
T 2aeu_A 145 IITGSTMDLKVIELENFKKVINTAKNKEAIVFVD--DASGAR 184 (374)
T ss_dssp EEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEE--CTTHHH
T ss_pred EEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEE--CCcccc
Confidence 66688999999 3 7999999999999999 777654
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-14 Score=123.70 Aligned_cols=168 Identities=8% Similarity=0.050 Sum_probs=111.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC-CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL-NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||++.|...++-| ..++.|.+|..+.++.... ...| +.....+|++.+++++ + .+++ +.
T Consensus 37 ~~g~~~ld~~~~~~~~~lg--~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g--------~~~v--~~ 102 (397)
T 2ord_A 37 EKGNAYLDFTSGIAVNVLG--HSHPRLVEAIKDQAEKLIHCSNLF-WNRPQMELAELLSKNT-F--------GGKV--FF 102 (397)
T ss_dssp TTCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHHHCSCCCTTS-EEHHHHHHHHHHHHTT-T--------SCEE--EE
T ss_pred CCCCEEEECCccccccccC--CCCHHHHHHHHHHHHhcccCcccc-CCHHHHHHHHHHHHhc-C--------CCeE--EE
Confidence 3577788998874323344 2578888887776644111 1112 2233455666555543 2 2444 68
Q ss_pred eccChhHHHHHHHHHHHhc----C-CCeEEecCCCchh-HHHHHHHhCCCc------------ceeEeccCCcCccccHH
Q psy6266 83 TLSGTGALRVGAEFLHRIL----N-YTTFYYSKPTWEN-HRLVFLNAGFTE------------AREYRYWNPEKRAVDFT 144 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~----~-gd~V~i~~P~y~~-y~~~~~~~g~~~------------~~~~~~~~~~~~~~d~~ 144 (218)
|.|+++|+.++++++.... + +++|++++|+|.. +...++..|. + ++.++. .|++
T Consensus 103 ~~gg~~a~~~al~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~g~-~~~~~~~~p~~~~~~~~~~-------~d~~ 174 (397)
T 2ord_A 103 ANTGTEANEAAIKIARKYGKKKSEKKYRILSAHNSFHGRTLGSLTATGQ-PKYQKPFEPLVPGFEYFEF-------NNVE 174 (397)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHCTTCCEEEEEBTCCCCSSHHHHHHSBC-HHHHGGGCSCCTTEEEECT-------TCHH
T ss_pred eCCHHHHHHHHHHHHHHHhhcCCCCCceEEEEcCCcCCCchhhhhccCC-hhhccccCCCCCCeeEecC-------CCHH
Confidence 9999999999888763211 5 4789999999965 4446777776 5 333322 2788
Q ss_pred HHHHHHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 145 GMYEDLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 145 ~~~~~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+++.++ +++.+++.++||||||. +|.++|++|++++|.| ++|.++.+.
T Consensus 175 ~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~D--e~~~~~~~~ 232 (397)
T 2ord_A 175 DLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFD--EVQCGMGRT 232 (397)
T ss_dssp HHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEE--CTTTTTTTT
T ss_pred HHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE--ecccCCccC
Confidence 8888775 34555656679999995 6889999999999999 999987653
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.50 E-value=3.7e-14 Score=123.03 Aligned_cols=175 Identities=11% Similarity=0.037 Sum_probs=114.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|...++-| ..++.|.+|+.+.+++......+.+.....+|++.+++++ + .++ ++.|
T Consensus 36 ~~g~~~lD~~~~~~~~~lg--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-~--------~~~--v~~~ 102 (406)
T 4adb_A 36 QQGKEYIDFAGGIAVNALG--HAHPELREALNEQASKFWHTGNGYTNEPVLRLAKKLIDAT-F--------ADR--VFFC 102 (406)
T ss_dssp TTCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHS-S--------CSE--EEEE
T ss_pred CCCCEEEECCCchhhcccC--CCCHHHHHHHHHHHHhcccccCCcCCHHHHHHHHHHHhhC-C--------CCe--EEEe
Confidence 4677889999884333455 2578888888776643111111223344567777776654 2 123 4699
Q ss_pred ccChhHHHHHHHHHHHh-----cCC-CeEEecCCCchhHHHHHHHhCCCcceeEeccCC--cCcc----ccHHHHHHHHh
Q psy6266 84 LSGTGALRVGAEFLHRI-----LNY-TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP--EKRA----VDFTGMYEDLV 151 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l-----~~g-d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~--~~~~----~d~~~~~~~l~ 151 (218)
.|+++|+.++++++... .+| |+|++++|+|+.+.......+. .+.....+.. .... .|++.+++.+.
T Consensus 103 ~gg~~a~~~al~~~~~~~~~~~~~g~~~vi~~~~~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 181 (406)
T 4adb_A 103 NSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAGG-QPAYSQDFAPLPADIRHAAYNDINSASALID 181 (406)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSS-CGGGTGGGCSCCSSEEEECTTCHHHHHTTCS
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCcCCCcHHHhhccC-CccccccCCCCCCCceEeCCCcHHHHHHHhc
Confidence 99999999988866321 056 9999999999999766666665 4332111100 0111 36777766663
Q ss_pred cCCCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+++.+++.+ |+||||. +|.++|++|++++|.| ++|.++.+.
T Consensus 182 ---~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~D--e~~~~~~~~ 232 (406)
T 4adb_A 182 ---DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFD--EVQTGVGRT 232 (406)
T ss_dssp ---TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEE--CTTTTTTTT
T ss_pred ---CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCcc
Confidence 445556554 9999984 7899999999999999 999887553
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.3e-14 Score=123.05 Aligned_cols=149 Identities=13% Similarity=-0.003 Sum_probs=102.1
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCC--CCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEeccChhHHHHHHHHHHHh
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPV--LGLESFSSAATRMLLGGDASPPLRE-GRAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
.++++.|.+|+.+.. ..+ |.+. .-..++++.+++++ + .++ .++ ++.|.|+++|+.++++++ +
T Consensus 28 ~~~~~~v~~a~~~~~----~~~-~~~~~~~~~~~~~~~la~~~-g------~~~~~~~-i~~~~ggt~al~~~~~~~--~ 92 (376)
T 3f0h_A 28 VMSSEEVRAIGAEQV----PYF-RTTEFSSTMLENEKFMLEYA-K------APEGSKA-VFMTCSSTGSMEAVVMNC--F 92 (376)
T ss_dssp CCCCHHHHHHHTSCC----CCC-SSHHHHHHHHHHHHHHHHHH-T------CCTTCEE-EEESSCHHHHHHHHHHHH--C
T ss_pred CCCcHHHHHHhcCCC----CCC-CCHHHHHHHHHHHHHHHHHh-C------CCCCceE-EEEcCChhHHHHHHHHhc--c
Confidence 456888887764422 112 2221 12244555555544 2 122 233 356889999999998877 6
Q ss_pred cCCCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HH
Q psy6266 101 LNYTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l 173 (218)
.|||+|++++|.|..+. ..+...|+ +++.++.. ..+.+|++.+++.+. +++.+++.++||||||. +|
T Consensus 93 ~~gd~vi~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~l~~i 166 (376)
T 3f0h_A 93 TKKDKVLVIDGGSFGHRFVQLCEIHEI-PYVALKLE--HGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLYDTMMI 166 (376)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHTTC-CEEEEECC--TTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEECCHHHH
T ss_pred CCCCeEEEEeCChhhHHHHHHHHHcCC-ceEEEeCC--CCCCCCHHHHHHhhc---cCceEEEEecccCCcceecCHHHH
Confidence 89999999998666654 34666788 88888762 346789988877553 34455556779999997 89
Q ss_pred HHHhhcCeEEEeeCCceeeccC
Q psy6266 174 AHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.++|++|++++|.| +++...
T Consensus 167 ~~l~~~~~~~li~D--~~~~~~ 186 (376)
T 3f0h_A 167 GEFCKKNNMFFVCD--CVSAFL 186 (376)
T ss_dssp HHHHHHTTCEEEEE--CTTTTT
T ss_pred HHHHHHcCCEEEEE--cCcccc
Confidence 99999999999999 777654
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-14 Score=124.21 Aligned_cols=152 Identities=12% Similarity=0.033 Sum_probs=109.1
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh-
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI- 100 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l- 100 (218)
..+++.|.+|+.+.. ...|.|. .+..++|+++++++.. ..+ .++++| +.|.|+++|+.++++++ .
T Consensus 14 ~~~~~~v~~a~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~-~~~--~~~~~v--~~~~g~t~al~~~~~~~--~~ 81 (385)
T 2bkw_A 14 IILSGAVQKALDVPS-----LGHTSPEFVSIFQRVLKNTRAVFKS-AAA--SKSQPF--VLAGSGTLGWDIFASNF--IL 81 (385)
T ss_dssp CCCCHHHHHTTSCCC-----CCTTSHHHHHHHHHHHHHHHHHTTC-CGG--GTCEEE--EEESCTTHHHHHHHHHH--SC
T ss_pred cCchHHHHHHHhccc-----cccCCHHHHHHHHHHHHHHHHHhCC-CCC--CCCceE--EEcCchHHHHHHHHHHH--hc
Confidence 456777777654322 1123332 2567888998888744 221 234444 69999999999998876 4
Q ss_pred --cCCCeEEec-CCCchhHH-HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----
Q psy6266 101 --LNYTTFYYS-KPTWENHR-LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ----- 171 (218)
Q Consensus 101 --~~gd~V~i~-~P~y~~y~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~----- 171 (218)
.+||+|+++ +|+|..+. ..++..|+ +++.++.. .+.+.+|++.+++.+++. ++.+++.++|+||||.
T Consensus 82 ~~~~gd~vlv~~~~~~~~~~~~~~~~~g~-~~~~v~~~-~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~l~ 157 (385)
T 2bkw_A 82 SKAPNKNVLVVSTGTFSDRFADCLRSYGA-QVDVVRPL-KIGESVPLELITEKLSQN--SYGAVTVTHVDTSTAVLSDLK 157 (385)
T ss_dssp TTCSCCEEEEECSSHHHHHHHHHHHHTTC-EEEEECCS-STTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECCHH
T ss_pred cCCCCCeEEEEcCCcchHHHHHHHHHcCC-ceEEEecC-CCCCCCCHHHHHHHHhcC--CCCEEEEEccCCCcCeEcCHH
Confidence 789999888 66777764 67788899 88888762 224567999999988641 2334455789999997
Q ss_pred HHHHHhhcC--eEEEeeCCceeec
Q psy6266 172 QVAHMVDKH--HVYLLRSGRINMC 193 (218)
Q Consensus 172 ~l~~l~~~~--~i~ii~D~r~~y~ 193 (218)
+|.++|++| ++++|.| ++|.
T Consensus 158 ~i~~~~~~~~~~~~li~D--~a~~ 179 (385)
T 2bkw_A 158 AISQAIKQTSPETFFVVD--AVCS 179 (385)
T ss_dssp HHHHHHHHHCTTSEEEEE--CTTT
T ss_pred HHHHHHHhhCCCCEEEEE--Cccc
Confidence 899999999 9999999 7776
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=4.2e-14 Score=120.23 Aligned_cols=160 Identities=9% Similarity=-0.048 Sum_probs=113.9
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..+|||+-+. .+ .+++.|++|+.+... +....|.+.....+|++.+++++ + . +.+ ++.|.|+
T Consensus 7 ~~~id~~~~~----~~--~~~~~v~~a~~~~~~--~~~~~~~~~~~~~~l~~~la~~~-g-~------~~~--v~~~~~g 68 (356)
T 1v72_A 7 PPALGFSSDN----IA--GASPEVAQALVKHSS--GQAGPYGTDELTAQVKRKFCEIF-E-R------DVE--VFLVPTG 68 (356)
T ss_dssp CCCCBCSCGG----GC--CCCHHHHHHHHHTTS--SCCCSTTCSHHHHHHHHHHHHHH-T-S------CCE--EEEESCH
T ss_pred CceEeeccCC----cc--CCCHHHHHHHHhhcc--CcccccccchHHHHHHHHHHHHh-C-C------CCc--EEEeCCc
Confidence 3567888763 22 457888888776542 12345665555677777777664 2 1 223 3589999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH--HHHh--CCCcceeEeccCCcCccccHHHHHH-HHhcC----CCCc
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLV--FLNA--GFTEAREYRYWNPEKRAVDFTGMYE-DLVNA----PDNS 157 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~--~~~~--g~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~----~~~~ 157 (218)
++|+.++++++ +.|||+|++++|+|+.+... +... |+ +++.++.. .+.+|++.+++ .+++. .+++
T Consensus 69 t~a~~~al~~~--~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~~---~~~~d~~~l~~~~i~~~~~~~~~~~ 142 (356)
T 1v72_A 69 TAANALCLSAM--TPPWGNIYCHPASHINNDECGAPEFFSNGA-KLMTVDGP---AAKLDIVRLRERTREKVGDVHTTQP 142 (356)
T ss_dssp HHHHHHHHHTS--CCTTEEEEECTTSHHHHSSTTHHHHHTTSC-EEEECCCG---GGCCCHHHHHHHTTSSTTCTTSCEE
T ss_pred cHHHHHHHHHh--cCCCCEEEEcCccchhhhhchHHHHHhCCc-EEEEecCC---CCeEcHHHHHHHhhhcchhhccCCc
Confidence 99999888765 57999999999999876554 6666 88 88888752 35789999988 78641 0134
Q ss_pred EEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeec
Q psy6266 158 VIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 158 ~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.+++.++||| ||. +|.++|++|++++|.| ++|.
T Consensus 143 ~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D--~a~~ 183 (356)
T 1v72_A 143 ACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMD--GSRF 183 (356)
T ss_dssp EEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEE--ETTH
T ss_pred eEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEE--chhh
Confidence 4555455887 997 6889999999999999 7775
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-13 Score=122.26 Aligned_cols=159 Identities=13% Similarity=0.035 Sum_probs=118.3
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCc---eEEEEeccChhHHHHHHHHHHH-h
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGR---AFGVQTLSGTGALRVGAEFLHR-I 100 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~---v~~~~t~G~~~al~~~~~~l~~-l 100 (218)
+..+.+.+++.++.+. ....|..+.|..++++++.+++.. ..+ .+.+. -.+++|.|+++|+.+++.++.. +
T Consensus 53 ~~~~~v~e~~~~a~~~--~~~~~~~~~~~~~l~~~~~~~la~-l~g--~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~ 127 (452)
T 2dgk_A 53 WDDENVHKLMDLSINK--NWIDKEEYPQSAAIDLRCVNMVAD-LWH--APAPKNGQAVGTNTIGSSEACMLGGMAMKWRW 127 (452)
T ss_dssp CCCHHHHHHHHHTTTC--BTTCTTTCHHHHHHHHHHHHHHHH-HTT--CCCCTTSCCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhcc--CCCChhhChhHHHHHHHHHHHHHH-HhC--CCcccccCCceEEeCCHHHHHHHHHHHHHHHH
Confidence 4456788887776643 234577778888888888766632 221 22222 1246999999999988776531 1
Q ss_pred -----cCC-----CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcH
Q psy6266 101 -----LNY-----TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170 (218)
Q Consensus 101 -----~~g-----d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG 170 (218)
.+| ++|++++ +|+.|...++..|+ +++.++.. .+.+.+|++.++++|. +++++++.++|+||||
T Consensus 128 ~~~~~~~G~~~~~~~vi~~~-~h~~~~~~~~~~G~-~v~~v~~~-~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG 201 (452)
T 2dgk_A 128 RKRMEAAGKPTDKPNLVCGP-VQICWHKFARYWDV-ELREIPMR-PGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTG 201 (452)
T ss_dssp HHHHHHTTCCCSCCEEEESS-CCHHHHHHHHHTTC-EEEECCCB-TTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTC
T ss_pred HHHHHhcCCCCCCcEEEECC-CcHHHHHHHHHcCc-eEEEEecC-CCCCeECHHHHHHHHh---hCCEEEEEEcCCcCCc
Confidence 155 5999999 99999999999999 99999873 3347789999999885 3456777789999999
Q ss_pred H-----HHHHHhhcC------eEEEeeCCceeeccCC
Q psy6266 171 Q-----QVAHMVDKH------HVYLLRSGRINMCGLT 196 (218)
Q Consensus 171 ~-----~l~~l~~~~------~i~ii~D~r~~y~~l~ 196 (218)
. +|.++|+++ ++|++.| ++|.++.
T Consensus 202 ~~~~l~~I~~ia~~~~~~~~~~~~l~vD--~a~~~~~ 236 (452)
T 2dgk_A 202 NYEFPQPLHDALDKFQADTGIDIDMHID--AASGGFL 236 (452)
T ss_dssp BBCCHHHHHHHHHHHHHHHCCCCCEEEE--CTTGGGT
T ss_pred ccCCHHHHHHHHHHHhhccCCCCcEEEE--cccHHHH
Confidence 8 899999984 9999999 8998753
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.48 E-value=4.7e-14 Score=123.89 Aligned_cols=179 Identities=13% Similarity=0.021 Sum_probs=109.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|.+..+-| ..++.|++|..+.++. ...|.+..|..++++++++++.. ..+ ...++| +.|
T Consensus 26 ~~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~---~~~~~~~~~~~~~~~~l~~~la~-~~~--~~~~~v--~~~ 95 (430)
T 3i4j_A 26 DAGRRYLDGSSGALVANIG--HGRAEVGERMAAQAAR---LPFVHGSQFSSDVLEEYAGRLAR-FVG--LPTFRF--WAV 95 (430)
T ss_dssp TTSCEEEETTHHHHTCTTC--BCCHHHHHHHHHHHHH---CCCCCTTTCEEHHHHHHHHHHHH-HTT--CTTCEE--EEE
T ss_pred CCCCEEEECCCchhccccC--CCCHHHHHHHHHHHHh---cccccccccCCHHHHHHHHHHHH-hCC--CCCCEE--EEe
Confidence 4677888988885444555 3478888887776644 23466666777777777777643 221 234554 699
Q ss_pred ccChhHHHHHHHHHHHh------cCCCeEEecCCCchhHHHHHHHhCCCcce---------------eEeccCCcC---c
Q psy6266 84 LSGTGALRVGAEFLHRI------LNYTTFYYSKPTWENHRLVFLNAGFTEAR---------------EYRYWNPEK---R 139 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l------~~gd~V~i~~P~y~~y~~~~~~~g~~~~~---------------~~~~~~~~~---~ 139 (218)
.|+++|+..+++++... .++|+|++++|+|+.|......++. .+. .++. .+. .
T Consensus 96 ~gg~ea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 172 (430)
T 3i4j_A 96 SGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASG-MGARRELYTPLMRPEAWPKLPK--PDPARNG 172 (430)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTC--------------------------CGGGSCEECC--CCTTSCH
T ss_pred CcHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccC-ccccccccCCcCCCCCceEcCC--Ccccchh
Confidence 99999999988876432 3578999999999998865555544 221 1111 000 1
Q ss_pred cccHHHHHHHHhcCC-CCcEEEEcccCCC-CcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 140 AVDFTGMYEDLVNAP-DNSVIILHACAHN-PTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 140 ~~d~~~~~~~l~~~~-~~~~iil~~~p~N-PTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
..|++.+++.|++.. ++..+++.+..+| |+|. +|.++|++|++++|.| |+|.++..
T Consensus 173 ~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D--Ev~~~~~~ 239 (430)
T 3i4j_A 173 AEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIAD--EVMSGMGR 239 (430)
T ss_dssp HHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred hHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEe--chhhCCCc
Confidence 124577777776421 2344555555667 8886 6899999999999999 99998754
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=120.63 Aligned_cols=141 Identities=13% Similarity=0.015 Sum_probs=105.4
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
.++.++.++++.. .. ..+.|+.. .+..+||+.+++++.. ++ ++.|.|+++|+.++++++ +
T Consensus 31 ~~~~~~~~~~~~~---~~--~~~~y~~~~~~~~~~l~~~la~~~g~---------~~--~~~~~~gt~a~~~al~~l--~ 92 (412)
T 2cb1_A 31 GFKTLEEGQERFA---TG--EGYVYARQKDPTAKALEERLKALEGA---------LE--AVVLASGQAATFAALLAL--L 92 (412)
T ss_dssp CCSSHHHHHHHHH---HC--CSCSBTTTCCHHHHHHHHHHHHHHTC---------SE--EEEESSHHHHHHHHHHTT--C
T ss_pred ecCChHHHHHHhc---cc--cCcCcCCCCChHHHHHHHHHHHHhCC---------Cc--EEEECCHHHHHHHHHHHH--h
Confidence 3455666666543 22 35678765 5688999999988743 23 358999999999988876 6
Q ss_pred cCCCeEEecCCCchhHHHHH----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----
Q psy6266 101 LNYTTFYYSKPTWENHRLVF----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ----- 171 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~y~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~----- 171 (218)
.+||+|++++|.|++....+ +..|+ +++.++. |++.+++.++ +++.+++..+|+||||.
T Consensus 93 ~~gd~vi~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~--------~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~l~ 160 (412)
T 2cb1_A 93 RPGDEVVAAKGLFGQTIGLFGQVLSLMGV-TVRYVDP--------EPEAVREALS---AKTRAVFVETVANPALLVPDLE 160 (412)
T ss_dssp CTTCEEEEETTCCHHHHHHHHHTTTTTTC-EEEEECS--------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHH
T ss_pred CCCCEEEEeCCCchhHHHHHHHHHHHcCC-EEEEECC--------CHHHHHHHhc---cCCeEEEEeCCCCCCcccccHH
Confidence 79999999999998765543 34677 6766643 3677777774 34566666899999997
Q ss_pred HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 172 QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 172 ~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+|.++|++|++++|.| ++|...
T Consensus 161 ~i~~l~~~~~~~li~D--~~~~~~ 182 (412)
T 2cb1_A 161 ALATLAEEAGVALVVD--NTFGAA 182 (412)
T ss_dssp HHHHHHHHHTCEEEEE--CGGGTT
T ss_pred HHHHHHHHcCCEEEEE--CCCccc
Confidence 8999999999999999 999875
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.2e-13 Score=117.01 Aligned_cols=150 Identities=11% Similarity=0.100 Sum_probs=114.4
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHH----
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLH---- 98 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~---- 98 (218)
.+..++.+.+|+.+.+++ ..|.+..+..+||+++++++.. . + .+.+.+|++|+.+++.++.
T Consensus 10 ~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~l~~~la~~~~~-~--------~--~i~~~sGt~a~~~al~~~~~~~~ 74 (390)
T 3b8x_A 10 SSTWDDLEYKAIQSVLDS----KMFTMGEYVKQYETQFAKTFGS-K--------Y--AVMVSSGSTANLLMIAALFFTKK 74 (390)
T ss_dssp CCCCCHHHHHHHHHHHHH----TCCSSCHHHHHHHHHHHHHHTC-S--------E--EEEESCHHHHHHHHHHHTTSSSS
T ss_pred CCCCCHHHHHHHHHHHHc----CCCCCChHHHHHHHHHHHHHCC-C--------c--EEEECCHHHHHHHHHHHHHhhhh
Confidence 456788888888777643 2477788999999999998743 1 2 2466777789988887651
Q ss_pred -HhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-HHHHH
Q psy6266 99 -RILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-QVAHM 176 (218)
Q Consensus 99 -~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-~l~~l 176 (218)
.+.+||+|++++|+|+++...++..|+ +++.++.. ++.+.+|++.+++.+.+ +...+++.+.++||.-. +|.++
T Consensus 75 ~~~~~g~~Vi~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~~~~~d~~~l~~~i~~--~~~~v~~~~~~g~~~~~~~i~~l 150 (390)
T 3b8x_A 75 PRLKKGDEIIVPAVSWSTTYYPLQQYGL-RVKFVDID-INTLNIDIESLKEAVTD--STKAILTVNLLGNPNNFDEINKI 150 (390)
T ss_dssp CSCCTTCEEEEESSSCHHHHHHHHHTTC-EEEEECBC-TTTCSBCHHHHHHHCCT--TEEEEEEECGGGCCCCHHHHHHH
T ss_pred cCCCCcCEEEECCCCcHHHHHHHHHcCC-EEEEEecC-ccccCcCHHHHHHHhCc--CCeEEEEECCccChhhHHHHHHH
Confidence 146899999999999999999999999 89998873 33467899999988853 22334444556777544 89999
Q ss_pred hhcCeEEEeeCCceeec
Q psy6266 177 VDKHHVYLLRSGRINMC 193 (218)
Q Consensus 177 ~~~~~i~ii~D~r~~y~ 193 (218)
|+++++++|.| ++|.
T Consensus 151 ~~~~~~~li~D--~a~~ 165 (390)
T 3b8x_A 151 IGGRDIILLED--NCES 165 (390)
T ss_dssp HTTSCCEEEEE--CTTC
T ss_pred HHHcCCEEEEE--CcCc
Confidence 99999999999 7776
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=120.47 Aligned_cols=176 Identities=10% Similarity=-0.010 Sum_probs=108.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccC-chHHHHHHHHHhhcCCCCccCcCCCCc----HHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWV-LPVVRQAEKELAADDSLNHEYLPVLGL----ESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~-~~~v~~a~~~~~~~~~~~~~Y~~~~G~----~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
..|...||++.|....+-| +. ++.|++|+.+.+++ .. .|++..+. .+|++++++++ + . .. +++|
T Consensus 39 ~~g~~~lD~~~~~~~~~lG--~~~~p~v~~a~~~~~~~--~~-~~~~~~~~~~~~~~l~~~la~~~-~-~---~~-~~~v 107 (419)
T 2eo5_A 39 VDGNKYLDFTSGIGVNNLG--WPSHPEVIKIGIEQMQK--LA-HAAANDFYNIPQLELAKKLVTYS-P-G---NF-QKKV 107 (419)
T ss_dssp TTSCEEEESSGGGGTTTTC--BSCCHHHHHHHHHHHTT--SC-CCSCSCSCCHHHHHHHHHHHHHS-S-C---SS-CEEE
T ss_pred CCCCEEEEccCChhhhccC--CCCCHHHHHHHHHHHhh--Cc-cccccccCCHHHHHHHHHHHHhC-C-C---Cc-CCEE
Confidence 3577788888885322223 23 78899988777643 22 24433343 44555555443 2 1 11 4554
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-HhCC------------CcceeEeccCCcCc----c-
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-NAGF------------TEAREYRYWNPEKR----A- 140 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-~~g~------------~~~~~~~~~~~~~~----~- 140 (218)
+.|.|+++|+.++++++.. .+||+|++++|+|+.+..... ..|. ..++.+|.. +.+ +
T Consensus 108 --~~~~gg~ea~~~ai~~~~~-~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~g~ 182 (419)
T 2eo5_A 108 --FFSNSGTEAIEASIKVVKN-TGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYP--NPYRNPWHI 182 (419)
T ss_dssp --EEESSHHHHHHHHHHHHHT-TSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCC--CSSSCTTCC
T ss_pred --EEeCchHHHHHHHHHHHHH-hhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCC--ccccccccc
Confidence 6999999999999886532 249999999999986544333 2221 034455441 111 1
Q ss_pred -----------ccHHHHH-HHHhcCC--CCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 141 -----------VDFTGMY-EDLVNAP--DNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 141 -----------~d~~~~~-~~l~~~~--~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+|++.++ +.+++.. +++.+++.+..|||||. +|.++|++|++++|.| |+|.++.+
T Consensus 183 ~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~D--E~~~~~g~ 260 (419)
T 2eo5_A 183 NGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDD--EVQMGLGR 260 (419)
T ss_dssp CTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred cccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCcc
Confidence 3577777 7775321 23445554434567895 6889999999999999 99998754
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-13 Score=115.72 Aligned_cols=175 Identities=9% Similarity=0.055 Sum_probs=112.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|.....-| ..++.|.+|..+.++.......+.+..-..+|++.+++++ + .+++ +.|
T Consensus 33 ~~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g--------~~~v--~~~ 99 (392)
T 3ruy_A 33 PEGNRYMDLLSAYSAVNQG--HRHPKIINALIDQANRVTLTSRAFHSDQLGPWYEKVAKLT-N--------KEMV--LPM 99 (392)
T ss_dssp TTCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHH-T--------CSEE--EEE
T ss_pred CCCCEEEEcCCChhhhccC--CCCHHHHHHHHHHHHhccccccccCCHHHHHHHHHHHHhc-C--------CCEE--EEe
Confidence 4677888988874322233 2578889888776643111111123344677777777665 2 2343 589
Q ss_pred ccChhHHHHHHHHHHHh--------cCCCeEEecCCCchhHHHHHHHhCCCcceeE----eccCC-cCc-cccHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRI--------LNYTTFYYSKPTWENHRLVFLNAGFTEAREY----RYWNP-EKR-AVDFTGMYED 149 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l--------~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~----~~~~~-~~~-~~d~~~~~~~ 149 (218)
.|+++|+.+++.++... ..+|+|++++|+|..+.......+. .+... +.... ... ..|++.+++.
T Consensus 100 ~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~l~~~ 178 (392)
T 3ruy_A 100 NTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFHGRTMGAVSMSS-NEEYKRGFGPMLPGIIVIPYGDLEALKAA 178 (392)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCCCSSHHHHHTCS-CTTTTTTCCSCCSSEEEECTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcCCCCHhhhhccC-ChhhccccCCCCCCCeeeCcccHHHHHHH
Confidence 99999999988865332 2268999999999776655544433 21100 00000 000 1278888888
Q ss_pred HhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
++ +++.+++..+||||||. +|.++|++|++++|.| ++|.++.+
T Consensus 179 l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~D--e~~~~~~~ 230 (392)
T 3ruy_A 179 IT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVAD--EIQTGLGR 230 (392)
T ss_dssp CC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEE--CTTTTTTT
T ss_pred hc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--echhCCCc
Confidence 75 34555655679999997 6889999999999999 99987654
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.8e-13 Score=119.27 Aligned_cols=180 Identities=11% Similarity=-0.016 Sum_probs=119.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~ 82 (218)
..|...||++.|.+..+-| ..++.|.+|..+.++. . ..|....|..++++++++++.. .... .. ++ ++.
T Consensus 40 ~~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~--~-~~~~~~~~~~~~~~~l~~~la~-~~~~--~~~~~--v~~ 109 (439)
T 3dxv_A 40 ENGRELIDLSGAWGAASLG--YGHPAIVAAVSAAAAN--P-AGATILSASNAPAVTLAERLLA-SFPG--EGTHK--IWF 109 (439)
T ss_dssp TTSCEEEESSTTTTTCTTC--BSCHHHHHHHHHHHHS--C-SCSCSSSSEEHHHHHHHHHHHH-TTTC--TTTEE--EEE
T ss_pred CCCCEEEECCCchhhccCC--CCCHHHHHHHHHHHHh--c-cCccccccCCHHHHHHHHHHHH-hCCC--CCCCE--EEE
Confidence 4678889999887544455 2678899887776654 2 3477677888888888888754 3211 12 34 469
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcc--------------eeEeccCCcCccc----cHH
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEA--------------REYRYWNPEKRAV----DFT 144 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~--------------~~~~~~~~~~~~~----d~~ 144 (218)
|.||++|+..+++++..+.+++.|++.+|+|..+.......+.... ..+++. ...... |++
T Consensus 110 ~~ggsea~~~al~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~ 188 (439)
T 3dxv_A 110 GHSGSDANEAAYRAIVKATGRSGVIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYR-PYRNDPTGDAILT 188 (439)
T ss_dssp ESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHCC-------------CEEEECCCCSSS-CBTTBTTSHHHHH
T ss_pred eCCHHHHHHHHHHHHHHHhCCCEEEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCC-cccccccHHHHHH
Confidence 9999999999888753344678999999999665544333332011 122221 000011 688
Q ss_pred HHHHHHhc-CCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 145 GMYEDLVN-APDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 145 ~~~~~l~~-~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
.+++.+++ .+++..+++.++++|++|. +|.++|++|++++|.| |+|.++.
T Consensus 189 ~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D--E~~~g~g 248 (439)
T 3dxv_A 189 LLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCD--EVKVGLA 248 (439)
T ss_dssp HHHHHHHTSCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTCTT
T ss_pred HHHHHHHhcCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCC
Confidence 88888842 2334455555667777775 7899999999999999 9999864
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-13 Score=122.27 Aligned_cols=178 Identities=10% Similarity=0.048 Sum_probs=116.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|.....-| ..++.|++|..+.++. ..+ .+..+..+++.++++++.. ... ...+ ++.|
T Consensus 46 ~~g~~~lD~~~~~~~~~lG--~~~p~v~~A~~~~~~~--~~~--~~~~~~~~~~~~la~~l~~-~~~--~~~~---v~~~ 113 (452)
T 3n5m_A 46 IQGKRYLDGMSGLWCVNSG--YGRKELAEAAYKQLQT--LSY--FPMSQSHEPAIKLAEKLNE-WLG--GEYV---IFFS 113 (452)
T ss_dssp TTCCEEEETTHHHHTCTTC--BCCHHHHHHHHHHHTT--CCC--CCTTSEEHHHHHHHHHHHH-HHT--SCEE---EEEE
T ss_pred CCCCEEEECCcchhhccCC--CCCHHHHHHHHHHHHh--cCC--cccccCCHHHHHHHHHHHH-hCC--CCce---EEEe
Confidence 5688899999885444566 3578899988776643 222 3345555666666666533 211 1112 4699
Q ss_pred ccChhHHHHHHHHHHHh---c---CCCeEEecCCCchhHHHHHHHhCCCccee----Eecc-------CCcCc--cc-c-
Q psy6266 84 LSGTGALRVGAEFLHRI---L---NYTTFYYSKPTWENHRLVFLNAGFTEARE----YRYW-------NPEKR--AV-D- 142 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l---~---~gd~V~i~~P~y~~y~~~~~~~g~~~~~~----~~~~-------~~~~~--~~-d- 142 (218)
.||++|+..+++++... . ++|+|++.+|+|..+......++. .+.. .+.. ..... .. |
T Consensus 114 ~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (452)
T 3n5m_A 114 NSGSEANETAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATG-QAQRRYQYEPFASGFLHVTPPDCYRMPGIER 192 (452)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCC-CGGGTTTTCCCCSCEEEECCCCTTTSTTTTT
T ss_pred CchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCC-chhhccccCCCCCCCeEeCCCccccCccCCc
Confidence 99999999998876422 4 789999999999998766666655 3321 1110 00000 00 1
Q ss_pred --------HHHHHHHHh-cCCCCcEEEEcccC-CCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 143 --------FTGMYEDLV-NAPDNSVIILHACA-HNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 143 --------~~~~~~~l~-~~~~~~~iil~~~p-~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
++.+++.++ ...++..+++.+++ || ||. +|.++|++|++++|.| |+|.++..
T Consensus 193 ~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~~g~g~ 263 (452)
T 3n5m_A 193 ENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGALLISD--EVICGFGR 263 (452)
T ss_dssp SCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred hhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCCEEEEe--cchhCCCc
Confidence 788888886 21233455555566 89 995 6899999999999999 99998743
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=121.67 Aligned_cols=176 Identities=12% Similarity=-0.027 Sum_probs=111.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++-|.+..+-| ..+|.|.+|..+.++. ....+.+.....+|++++++++.+ .++| +.|
T Consensus 52 ~~g~~ylD~~~~~~~~~lG--~~~p~v~~a~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~--------~~~v--~~~ 117 (434)
T 3l44_A 52 VDGNKYIDYLAAYGPIITG--HAHPHITKAITTAAEN--GVLYGTPTALEVKFAKMLKEAMPA--------LDKV--RFV 117 (434)
T ss_dssp TTCCEEEECCGGGTTCSSC--BTCHHHHHHHHHHHHH--CSCCSSCCHHHHHHHHHHHHHCTT--------CSEE--EEE
T ss_pred CCCCEEEECCCchhccccC--CCCHHHHHHHHHHHHh--CcCCCCCCHHHHHHHHHHHHhCCC--------CCEE--EEe
Confidence 4678888888886444455 3578898887776644 222244566778888888876522 2444 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCccee--EeccC-------CcCc---cccHHHHHHHHh
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEARE--YRYWN-------PEKR---AVDFTGMYEDLV 151 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~--~~~~~-------~~~~---~~d~~~~~~~l~ 151 (218)
.||++|+.++++++....++++|++++|+|..+.......++..... .|... .+.. -.|++.+++.++
T Consensus 118 ~sGsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 197 (434)
T 3l44_A 118 NSGTEAVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALD 197 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCCEEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHH
Confidence 99999999988865433468999999999987654333222201111 11000 0000 017888888886
Q ss_pred cCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+..++..+++.+..+|++|. +|.++|++|++++|.| |+|.+|
T Consensus 198 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~D--Ev~~g~ 248 (434)
T 3l44_A 198 KWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD--EVITAF 248 (434)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEE--CTTTTT
T ss_pred hCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccce
Confidence 43233445554444444443 7899999999999999 999987
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=117.51 Aligned_cols=147 Identities=12% Similarity=0.051 Sum_probs=112.4
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH-hc
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR-IL 101 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~-l~ 101 (218)
.+++++.|++|..+.++. ..|.|..+..+||+++++++.. ++ ++.|.|+++|+.++++++.. +.
T Consensus 8 ~~~~~~~v~~a~~~~~~~----~~~~~~~~~~~l~~~la~~~~~---------~~--v~~~~ggt~al~~~~~~~~~~~~ 72 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNS----KQLTQGKRSLLFEEALCEFLGV---------KH--ALVFNSATSALLTLYRNFSEFSA 72 (375)
T ss_dssp CCCCCHHHHHHHHHHHTS----SCCSSSHHHHHHHHHHHHHHTC---------SE--EEEESCHHHHHHHHHHHSSCCCT
T ss_pred CCCCCHHHHHHHHHHHHc----CcccCChHHHHHHHHHHHHhCC---------Ce--EEEeCCHHHHHHHHHHHhcccCC
Confidence 356788999998877743 2355667789999999998732 13 46899999999998876510 36
Q ss_pred CCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHH
Q psy6266 102 NYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHM 176 (218)
Q Consensus 102 ~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l 176 (218)
|||+|++++|+|+.+...++..|+ +++.++.. .+ ..+|++.+++.+. +++.+++. .||||. +|.++
T Consensus 73 ~gd~Vl~~~~~~~~~~~~~~~~g~-~~~~~~~~-~~-~~~d~~~l~~~i~---~~~~~v~~---~~~tG~~~~l~~i~~l 143 (375)
T 2fnu_A 73 DRNEIITTPISFVATANMLLESGY-TPVFAGIK-ND-GNIDELALEKLIN---ERTKAIVS---VDYAGKSVEVESVQKL 143 (375)
T ss_dssp TSCEEEECSSSCTHHHHHHHHTTC-EEEECCBC-TT-SSBCGGGSGGGCC---TTEEEEEE---ECGGGCCCCHHHHHHH
T ss_pred CCCEEEECCCccHhHHHHHHHCCC-EEEEeccC-CC-CCCCHHHHHhhcC---cCceEEEE---eCCcCCccCHHHHHHH
Confidence 899999999999999999999999 89888873 33 3678888877664 34444433 234996 89999
Q ss_pred hhcCeEEEeeCCceeeccC
Q psy6266 177 VDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 177 ~~~~~i~ii~D~r~~y~~l 195 (218)
|+++++++|.| ++|...
T Consensus 144 ~~~~~~~li~D--~a~~~~ 160 (375)
T 2fnu_A 144 CKKHSLSFLSD--SSHALG 160 (375)
T ss_dssp HHHHTCEEEEE--CTTCTT
T ss_pred HHHcCCEEEEE--CccccC
Confidence 99999999999 887643
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.9e-13 Score=119.33 Aligned_cols=115 Identities=11% Similarity=0.049 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH----hCCCcc
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN----AGFTEA 128 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~----~g~~~~ 128 (218)
..+|++.++++... ++ ++.+.+|++|+.++++++ +.|||+|++++|+|+.+...++. .|+ ++
T Consensus 83 ~~~l~~~la~~~g~---------~~--~~~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~-~~ 148 (414)
T 3ndn_A 83 VSVFEERLRLIEGA---------PA--AFATASGMAAVFTSLGAL--LGAGDRLVAARSLFGSCFVVCSEILPRWGV-QT 148 (414)
T ss_dssp HHHHHHHHHHHHTC---------SE--EEEESSHHHHHHHHHHTT--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC-EE
T ss_pred HHHHHHHHHHHHCC---------Cc--EEEECCHHHHHHHHHHHH--hCCCCEEEEcCCccchHHHHHHHHHHHcCc-EE
Confidence 45566666655421 23 357888899999888766 67999999999999998877654 888 88
Q ss_pred eeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 129 REYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 129 ~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.++.. |++.+++++.. ++.+++..+|+||||. +|.++|+++++++|.| ++|.
T Consensus 149 ~~v~~~-------d~~~l~~ai~~---~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livD--e~~~ 206 (414)
T 3ndn_A 149 VFVDGD-------DLSQWERALSV---PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLD--NVFA 206 (414)
T ss_dssp EEECTT-------CHHHHHHHTSS---CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE--CTTT
T ss_pred EEeCCC-------CHHHHHHhcCC---CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEE--CCCc
Confidence 887541 77888888853 3445555899999997 8999999999999999 7775
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-13 Score=116.73 Aligned_cols=145 Identities=9% Similarity=0.021 Sum_probs=98.9
Q ss_pred cCchHHHHHHHHHhhcCCCC-c---cCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLN-H---EYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLH 98 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~-~---~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~ 98 (218)
+.++.|.+|..+.+.+.... . .|.+ ..+..+||+.+++++ + .++++| +.|.|+++++.+++.++.
T Consensus 39 ~~~~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g------~~~~~v--~~~~g~t~al~~al~~~~ 109 (416)
T 1qz9_A 39 ARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLI-G------ARDGEV--VVTDTTSINLFKVLSAAL 109 (416)
T ss_dssp CCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTT-T------CCTTSE--EECSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHc-C------CCcccE--EEeCChhHHHHHHHHhhc
Confidence 56778888877766431011 0 1111 245577888887665 3 234555 478999999988777653
Q ss_pred Hh----cCCCe-EEecCCCchhHHHHHH----Hh--CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 99 RI----LNYTT-FYYSKPTWENHRLVFL----NA--GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 99 ~l----~~gd~-V~i~~P~y~~y~~~~~----~~--g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
.+ .|||+ |++++++|+++...+. .. |+ +++.++. ++.+++.+. +++.+++.++|+|
T Consensus 110 ~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~-~~~~v~~---------~~~l~~~i~---~~~~~v~~~~~~n 176 (416)
T 1qz9_A 110 RVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY-TLRLVDS---------PEELPQAID---QDTAVVMLTHVNY 176 (416)
T ss_dssp HHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC-EEEEESS---------GGGHHHHCS---TTEEEEEEESBCT
T ss_pred ccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc-eEEEeCc---------HHHHHHHhC---CCceEEEEecccc
Confidence 23 78997 5555679997654432 23 88 8887754 355666664 3456677789999
Q ss_pred CcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 168 PTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 168 PTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
|||. +|.++|+++++++|.| ++|.
T Consensus 177 ptG~~~~l~~i~~l~~~~~~~li~D--~a~~ 205 (416)
T 1qz9_A 177 KTGYMHDMQALTALSHECGALAIWD--LAHS 205 (416)
T ss_dssp TTCBBCCHHHHHHHHHHHTCEEEEE--CTTT
T ss_pred CcccccCHHHHHHHHHHcCCEEEEE--cccc
Confidence 9997 8999999999999999 8886
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.1e-13 Score=120.77 Aligned_cols=138 Identities=12% Similarity=0.104 Sum_probs=103.4
Q ss_pred ccCcC---CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH--hcCCC-----eEEecCCCch
Q psy6266 45 HEYLP---VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR--ILNYT-----TFYYSKPTWE 114 (218)
Q Consensus 45 ~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~--l~~gd-----~V~i~~P~y~ 114 (218)
+.|.+ +.|..++++++++++.. ..+ .+ ..+++|.|+++|+..+++++.. +++|| +|++++|+|+
T Consensus 94 ~~~~~~~~~~g~~~l~~~l~~~la~-~~g--~~---~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~ 167 (474)
T 1wyu_B 94 HPYQDPRTAQGALRLMWELGEYLKA-LTG--MD---AITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHG 167 (474)
T ss_dssp CTTSCGGGCHHHHHHHHHHHHHHHH-HHT--CS---EEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCT
T ss_pred CCCCchhhChHHHHHHHHHHHHHHH-HHC--CC---ceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcCh
Confidence 44554 67888888888887743 222 11 1245778899998876655432 35888 9999999999
Q ss_pred hHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH------HHHHHhhcCeEEEeeCC
Q psy6266 115 NHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ------QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 115 ~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~------~l~~l~~~~~i~ii~D~ 188 (218)
.|...++..|+ +++.++.. +.+.+|++.+++.+.+ ++.+++.++| ||||. +|.++|++|+++++.|
T Consensus 168 ~~~~~~~~~G~-~vv~v~~~--~~~~~d~~~L~~~i~~---~t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~D- 239 (474)
T 1wyu_B 168 SNPATASMAGY-QVREIPSG--PEGEVDLEALKRELGP---HVAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYD- 239 (474)
T ss_dssp HHHHHHHHTTC-EEEEECBC--TTSSBCHHHHHHHCST---TEEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEE-
T ss_pred hhHHHHHHCCC-EEEEecCC--CCCCcCHHHHHHhhCC---CceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEe-
Confidence 99999999999 99999873 3467899999998853 3444544556 79995 7999999999999999
Q ss_pred ceeeccCCC
Q psy6266 189 RINMCGLTT 197 (218)
Q Consensus 189 r~~y~~l~~ 197 (218)
++|....+
T Consensus 240 -ea~~~~~~ 247 (474)
T 1wyu_B 240 -GANLNAIM 247 (474)
T ss_dssp -GGGGGGTT
T ss_pred -Cchhhhhc
Confidence 89875544
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=4.5e-13 Score=116.83 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=96.4
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhc
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRIL 101 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~ 101 (218)
.+..+.+.++....... ...+.|. +.....+|++.+++++.. ++ .+++.+|++|+.++++++ +.
T Consensus 37 ~~~~~~~~~~~~~~~~~-~~~~~~~r~~~~~~~~l~~~la~~~g~---------~~--~i~~~sG~~a~~~~l~~~--~~ 102 (398)
T 1gc0_A 37 TFTFPTVEYGAACFAGE-QAGHFYSRISNPTLNLLEARMASLEGG---------EA--GLALASGMGAITSTLWTL--LR 102 (398)
T ss_dssp CBCCC----------------------CCHHHHHHHHHHHHHHTC---------SE--EEEESSHHHHHHHHHHHH--CC
T ss_pred ccccCCHHHHHHhhcCC-cCCCcccCCCChHHHHHHHHHHHHhCC---------Cc--EEEECCHHHHHHHHHHHH--hc
Confidence 34456666654321111 1233454 556778899999987632 12 245666689999988876 67
Q ss_pred CCCeEEecCCCchhHHHHH----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----H
Q psy6266 102 NYTTFYYSKPTWENHRLVF----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----Q 172 (218)
Q Consensus 102 ~gd~V~i~~P~y~~y~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~ 172 (218)
+||+|++++|.|+++...+ +..|+ +++.++. .|++.+++.++ +++.+++..+|+||||. +
T Consensus 103 ~gd~vl~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~l~~ 171 (398)
T 1gc0_A 103 PGDEVLLGNTLYGCTFAFLHHGIGEFGV-KLRHVDM-------ADLQALEAAMT---PATRVIYFESPANPNMHMADIAG 171 (398)
T ss_dssp TTCEEEEESSCCSHHHHHHHHTGGGGTC-EEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHH
T ss_pred CCCEEEEeCCCchhHHHHHHHHHHHcCC-EEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCcccccHHH
Confidence 9999999999999988766 55677 6766643 27788888775 34556666789999997 8
Q ss_pred HHHHhhcCeEEEeeCCceeeccC
Q psy6266 173 VAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 173 l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
|.++|+++++++|.| ++|...
T Consensus 172 i~~l~~~~~~~li~D--~~~~~~ 192 (398)
T 1gc0_A 172 VAKIARKHGATVVVD--NTYCTP 192 (398)
T ss_dssp HHHHHGGGTCEEEEE--CTTTHH
T ss_pred HHHHHHHcCCEEEEE--CCCccc
Confidence 999999999999999 888743
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.3e-13 Score=122.46 Aligned_cols=183 Identities=11% Similarity=0.034 Sum_probs=121.5
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||++.|.+..+-| ..++.|++|..+.+++ ..+.|....|..++++++++++.. ... ...++| +.
T Consensus 47 d~~G~~~lD~~~~~~~~~lG--~~~p~v~~A~~~~~~~--~~~~~~~~~~~~~~~~~la~~l~~-~~~--~~~~~v--~~ 117 (460)
T 3gju_A 47 DNNGRKSIDAFAGLYCVNVG--YGRQKIADAIATQAKN--LAYYHAYVGHGTEASITLAKMIID-RAP--KGMSRV--YF 117 (460)
T ss_dssp ETTCCEEEETTHHHHTCTTC--BCCHHHHHHHHHHHHH--HSCCCCCTTCCCHHHHHHHHHHHH-HSC--TTEEEE--EE
T ss_pred ECCCCEEEECCcchhhccCC--CCCHHHHHHHHHHHHh--ccccccccccCCHHHHHHHHHHHh-hCC--CCcCEE--EE
Confidence 35688899999885545566 4578888887766543 234576667777777777777743 211 233454 69
Q ss_pred eccChhHHHHHHHHHHHh------cCCCeEEecCCCchhHHHHHHHhCCCcc-------------eeEecc---CCcCcc
Q psy6266 83 TLSGTGALRVGAEFLHRI------LNYTTFYYSKPTWENHRLVFLNAGFTEA-------------REYRYW---NPEKRA 140 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l------~~gd~V~i~~P~y~~y~~~~~~~g~~~~-------------~~~~~~---~~~~~~ 140 (218)
|.||++|+..+++++... .+++.|++++|+|..+......++. .+ ..++.. ..+..+
T Consensus 118 ~~gGseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g 196 (460)
T 3gju_A 118 GLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTG-LDLFHNAFDLPRAPVLHTEAPYYFRRTDRS 196 (460)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCC-CGGGTTTTTCSCTTEEEECCCCGGGCSCTT
T ss_pred eCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccC-CcccccccCCCCCCCEEeCCCccccCCccc
Confidence 999999999998876422 2479999999999988766655544 22 222210 001112
Q ss_pred cc--------HHHHHHHHhcC-CCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 141 VD--------FTGMYEDLVNA-PDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 141 ~d--------~~~~~~~l~~~-~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
.+ ++.+++.+++. .++..+++.++++|++|. +|.++|++|++++|.| |+|.++..
T Consensus 197 ~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~~g~gr 269 (460)
T 3gju_A 197 MSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVAD--EVVTGFGR 269 (460)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTTTT
T ss_pred cChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCc
Confidence 22 56777777532 123455555566777775 6899999999999999 99998743
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=118.38 Aligned_cols=163 Identities=10% Similarity=0.060 Sum_probs=116.9
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEeccChhHHHHHHHHHHH-h-
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAFGVQTLSGTGALRVGAEFLHR-I- 100 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G~~~al~~~~~~l~~-l- 100 (218)
.++++.+.+++.+.... ....|....+..++.+.+.+++.. ..+....++ .+..+.|.|+++|+.+++.++.. +
T Consensus 66 ~~~~~~v~~~l~~~~~~--~~~~~~~~p~~~~le~~~~~~la~-l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~ 142 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINK--NYVDMDEYPVTTELQNRCVNMIAH-LFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQ 142 (502)
T ss_dssp CCCCHHHHHHHHHTTTC--BTTCTTTCHHHHHHHHHHHHHHHH-HTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcc--CCCChhcChhHHHHHHHHHHHHHH-HhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHh
Confidence 35678888887776643 233355555666676666555422 222111122 33445789999999988776532 1
Q ss_pred ----cCCC-----eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH
Q psy6266 101 ----LNYT-----TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ 171 (218)
Q Consensus 101 ----~~gd-----~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~ 171 (218)
.+|| +|++++++++.+...++..|+ +++.++.. .+.+.+|++.+++++. +++.+++...|+||||.
T Consensus 143 ~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~-~~~~v~~~-~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~ 217 (502)
T 3hbx_A 143 NKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEV-ELKEVKLS-EGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGE 217 (502)
T ss_dssp HHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTC-EEEEECCB-TTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCC
T ss_pred HHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCc-eeEEEecC-CCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCc
Confidence 1277 999999999999999999999 89999873 3346789999999885 34566666789999997
Q ss_pred -----HHHHHhhcC------eEEEeeCCceeeccCC
Q psy6266 172 -----QVAHMVDKH------HVYLLRSGRINMCGLT 196 (218)
Q Consensus 172 -----~l~~l~~~~------~i~ii~D~r~~y~~l~ 196 (218)
+|.++|+++ ++|++.| ++|.++.
T Consensus 218 ~~~l~~I~~ia~~~~~~~~~~~~l~VD--~A~~~~~ 251 (502)
T 3hbx_A 218 FEDVKLLNDLLVEKNKETGWDTPIHVD--AASGGFI 251 (502)
T ss_dssp BCCHHHHHHHHHHHHHHHCCCCCEEEE--CTTGGGT
T ss_pred ccCHHHHHHHHHHhhhccCCCCeEEEE--CCccchh
Confidence 899999998 9999999 8887653
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-13 Score=116.89 Aligned_cols=120 Identities=13% Similarity=0.067 Sum_probs=94.6
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH----HHHHhCC
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL----VFLNAGF 125 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~----~~~~~g~ 125 (218)
.....+|+++++++... +. .+.+.+|++|+.++++++ +.|||+|++++|+|+.+.. .++..|+
T Consensus 81 ~p~~~~le~~lA~l~g~---------~~--~v~~~sG~~Ai~~al~al--~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 147 (430)
T 3ri6_A 81 NPTVEDLEQRLKNLTGA---------LG--VLALGSGMAAISTAILTL--ARAGDSVVTTDRLFGHTLSLFQKTLPSFGI 147 (430)
T ss_dssp CHHHHHHHHHHHHHHTC---------SE--EEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTHHHHTTC
T ss_pred CHHHHHHHHHHHHHHCC---------Cc--EEEECCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHHHHHHHcCC
Confidence 45678899999887633 12 245666789999888876 6899999999999999887 5677888
Q ss_pred CcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 126 TEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+++.++.. |++.++++++ +++.+++..+|+||||. +|+++|+++++++|.| ++|...
T Consensus 148 -~~~~v~~~-------d~~~l~~ai~---~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD--~a~~~~ 209 (430)
T 3ri6_A 148 -EVRFVDVM-------DSLAVEHACD---ETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVD--TTMTPP 209 (430)
T ss_dssp -EEEEECTT-------CHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEE--CTTSCT
T ss_pred -EEEEeCCC-------CHHHHHHhhC---CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE--CCCccc
Confidence 88887541 7788888775 35566667899999997 8999999999999999 787643
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=116.41 Aligned_cols=183 Identities=11% Similarity=0.066 Sum_probs=119.0
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||++-|.+...-| ..++.|++|..+.+++ ..+.|+...|..++++++++++.. ... ...++| +.
T Consensus 46 d~~g~~ylD~~~~~~~~~lG--~~~p~v~~A~~~~~~~--~~~~~~~~~~~~~~~~~la~~l~~-~~~--~~~~~v--~~ 116 (459)
T 4a6r_A 46 DSEGNKIIDGMAGLWCVNVG--YGRKDFAEAARRQMEE--LPFYNTFFKTTHPAVVELSSLLAE-VTP--AGFDRV--FY 116 (459)
T ss_dssp ETTCCEEEETTHHHHTCTTC--BCCHHHHHHHHHHHHH--CSCCCTTSSSCCHHHHHHHHHHHH-HSC--TTCCEE--EE
T ss_pred ECCCCEEEECCCchhcccCC--CCCHHHHHHHHHHHHh--ccccccccccCCHHHHHHHHHHHH-hCC--CCCCEE--EE
Confidence 35678888988885544556 3478898887776654 334566666777777777777743 221 233554 69
Q ss_pred eccChhHHHHHHHHHHHh------cCCCeEEecCCCchhHHHHHHHhCCCcce-------------eEe--c-cCCcCcc
Q psy6266 83 TLSGTGALRVGAEFLHRI------LNYTTFYYSKPTWENHRLVFLNAGFTEAR-------------EYR--Y-WNPEKRA 140 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l------~~gd~V~i~~P~y~~y~~~~~~~g~~~~~-------------~~~--~-~~~~~~~ 140 (218)
|.||++|+..+++++... .+++.|++.+|+|..|......++. .+. .++ + +.....
T Consensus 117 ~~ggseA~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~- 194 (459)
T 4a6r_A 117 TNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGG-MKYMHEQGDLPIPGMAHIEQPWWYKHGKD- 194 (459)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC-CTTTC---CCSCSSEEEECCCCHHHHCTT-
T ss_pred eCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcC-ChhhccccCCCCCCCEEeCCCccccCCcc-
Confidence 999999999998876421 1579999999999998876666654 332 111 1 000000
Q ss_pred cc--------HHHHHHHHhcCC-CCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 141 VD--------FTGMYEDLVNAP-DNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 141 ~d--------~~~~~~~l~~~~-~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.| ++.+++.+.+.. ++..+++.++.+|++|. +|.++|++|++++|.| |+|.++...
T Consensus 195 ~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~~g~gr~ 268 (459)
T 4a6r_A 195 MTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVAD--EVICGFGRT 268 (459)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTTTTT
T ss_pred cCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe--ccccCCCcc
Confidence 12 566777775321 23344444434444443 7899999999999999 999987443
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3e-13 Score=118.94 Aligned_cols=176 Identities=10% Similarity=-0.056 Sum_probs=113.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++-|.+...-| ..+|.|++|..+.+++ ..+.|.+..+..+|++++++++.+ .++| +.|
T Consensus 50 ~~g~~ylD~~~~~~~~~lG--~~~p~v~~A~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~--------~~~v--~~~ 115 (429)
T 3k28_A 50 IDGNEYIDYVLSWGPLIHG--HANDRVVEALKAVAER--GTSFGAPTEIENKLAKLVIERVPS--------IEIV--RMV 115 (429)
T ss_dssp TTCCEEEESCGGGTTCTTC--BSCHHHHHHHHHHHHH--CSCCSSCCHHHHHHHHHHHHHSTT--------CSEE--EEE
T ss_pred CCCCEEEECCCChhhcccC--CCCHHHHHHHHHHHhh--CcCcCCCCHHHHHHHHHHHHhCCC--------CCEE--EEe
Confidence 4678888988886544555 3688899887776654 233456777888999999887522 2444 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCc------------cccHHHHHHHHh
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKR------------AVDFTGMYEDLV 151 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~------------~~d~~~~~~~l~ 151 (218)
.||++|+..++.++....+++.|++.+|+|..+.......++..+..++....... ..|++.+++.++
T Consensus 116 ~~Gsea~~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~ 195 (429)
T 3k28_A 116 NSGTEATMSALRLARGYTGRNKILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFE 195 (429)
T ss_dssp SSHHHHHHHHHHHHHHHHTCCEEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHH
Confidence 99999999988765433467899999999986543222222201211111000000 017888888886
Q ss_pred cCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.+++..+++.++.+|++|. +|.++|++|++++|.| |+|.++
T Consensus 196 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D--Ev~~g~ 246 (429)
T 3k28_A 196 QFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFD--EVMTGF 246 (429)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEE--CTTTTT
T ss_pred hCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe--cccccc
Confidence 43223344444444444443 7899999999999999 999988
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-12 Score=114.27 Aligned_cols=125 Identities=11% Similarity=0.060 Sum_probs=96.8
Q ss_pred ccCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH--
Q psy6266 45 HEYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF-- 120 (218)
Q Consensus 45 ~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~-- 120 (218)
+.|+ +.....+||+++++++.. ++ ++.|.||++|+.+++.++ +.+||+|++++|.|+++...+
T Consensus 58 ~~y~r~~~~~~~~l~~~la~~~g~---------~~--~~~~~sGt~A~~~al~~~--~~~gd~Vi~~~~~y~~~~~~~~~ 124 (392)
T 3qhx_A 58 YEYARTGNPTRTALEAALAAVEDA---------AF--GRAFSSGMAAADCALRAM--LRPGDHVVIPDDAYGGTFRLIDK 124 (392)
T ss_dssp BCBTTTCCHHHHHHHHHHHHHTTC---------SE--EEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHH
T ss_pred ccccCCCChHHHHHHHHHHHHhCC---------Cc--EEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCcchHHHHHHH
Confidence 4454 345567899999887633 12 357888899999988866 679999999999999877666
Q ss_pred --HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 121 --LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 121 --~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+..|. +++.++. .|++.++++++ +++.+++..+|+||||. +|.++|++|++++|.| ++|.
T Consensus 125 ~~~~~g~-~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D--~~~~ 191 (392)
T 3qhx_A 125 VFTGWNV-EYTPVAL-------ADLDAVRAAIR---PTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVD--NTFA 191 (392)
T ss_dssp TGGGGTC-EEEEECT-------TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE--CTTT
T ss_pred HHHhcCc-EEEEeCC-------CCHHHHHHhhC---CCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEE--CCCc
Confidence 55677 7777654 17788888875 34566666789999997 8999999999999999 8887
Q ss_pred cC
Q psy6266 194 GL 195 (218)
Q Consensus 194 ~l 195 (218)
..
T Consensus 192 ~~ 193 (392)
T 3qhx_A 192 SP 193 (392)
T ss_dssp CT
T ss_pred cc
Confidence 44
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.9e-13 Score=117.90 Aligned_cols=174 Identities=10% Similarity=-0.005 Sum_probs=110.1
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|.+..+-| ..++.|.+|..+.++. ..+ |.. ..++++++++++.. ... ..++| +.|
T Consensus 49 ~~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~--~~~-~~~---~~~~~~~la~~l~~-~~~---~~~~v--~~~ 114 (427)
T 3fq8_A 49 VDGNRYIDYVGTWGPAICG--HAHPEVIEALKVAMEK--GTS-FGA---PCALENVLAEMVND-AVP---SIEMV--RFV 114 (427)
T ss_dssp TTSCEEEESSGGGTTCTTC--BTCHHHHHHHHHHHTT--CSC-CSS---CCHHHHHHHHHHHH-HST---TCSEE--EEE
T ss_pred CCCCEEEECCCchhhhccC--CCCHHHHHHHHHHHHh--CCC-cCC---CCHHHHHHHHHHHH-hCC---CCCEE--EEe
Confidence 4678889999886544556 3688899988776643 222 322 34455555555533 221 23554 699
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCccee--EeccCCcCc------------cccHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEARE--YRYWNPEKR------------AVDFTGMYED 149 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~--~~~~~~~~~------------~~d~~~~~~~ 149 (218)
.||++|+.+++.+......+++|++.+|+|..+.............. +|. .... -.|++.+++.
T Consensus 115 ~ggsea~~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~d~~~le~~ 192 (427)
T 3fq8_A 115 NSGTEACMAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPS--SPGVPKKTTANTLTTPYNDLEAVKAL 192 (427)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCS--CSSSCHHHHTTEEEEETTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCC--CCCCCCcccCceeecCCCCHHHHHHH
Confidence 99999999988654333456899999999987543222222201110 111 0000 0178888888
Q ss_pred HhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+++.+.+..+++.+.++|++|. +|.++|++|++++|.| |+|.++
T Consensus 193 l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D--Ev~~g~ 245 (427)
T 3fq8_A 193 FAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD--EVITGF 245 (427)
T ss_dssp HHHSTTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTBT
T ss_pred HHhCCCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--cccccc
Confidence 8764334555555556666664 7899999999999999 999988
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=7.4e-13 Score=116.19 Aligned_cols=179 Identities=9% Similarity=0.016 Sum_probs=111.3
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC--CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL--NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
.|...+|++.|....+-| ..++.|++|+.+.++.... ...|. .....+|++++++++. ..+++| +.
T Consensus 41 ~g~~ylD~~~~~~~~~lg--~~~p~v~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~la~~~~-------~~~~~v--~~ 108 (429)
T 1s0a_A 41 DGRRLVDGMSSWWAAIHG--YNHPQLNAAMKSQIDAMSHVMFGGIT-HAPAIELCRKLVAMTP-------QPLECV--FL 108 (429)
T ss_dssp TSCEEEESSTTTTTCTTC--BSCHHHHHHHHHHHHHCSCCCCSSEE-CHHHHHHHHHHHHHSC-------TTCCEE--EE
T ss_pred CCCEEEEcCccHhhccCC--CCCHHHHHHHHHHHHhcccccccccC-CHHHHHHHHHHHHhCC-------CCCCEE--EE
Confidence 466677777764222333 2578888887776644111 01232 2224567777776642 234554 59
Q ss_pred eccChhHHHHHHHHHHH-hc----CCCeEEecCCCchhHHHHHHHh-CC------------CcceeEeccC---CcCc-c
Q psy6266 83 TLSGTGALRVGAEFLHR-IL----NYTTFYYSKPTWENHRLVFLNA-GF------------TEAREYRYWN---PEKR-A 140 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~-l~----~gd~V~i~~P~y~~y~~~~~~~-g~------------~~~~~~~~~~---~~~~-~ 140 (218)
|.|+++|+.++++++.. .. |||+|++++|+|..+....... |. ..+..++... .+.+ .
T Consensus 109 ~~ggtea~~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (429)
T 1s0a_A 109 ADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDE 188 (429)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCG
T ss_pred eCCHHHHHHHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchH
Confidence 99999999998876532 12 6999999999998865433222 10 0123333310 0122 4
Q ss_pred ccHHHHHHHHhcCCCCcEEEEcccC-CCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 141 VDFTGMYEDLVNAPDNSVIILHACA-HNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 141 ~d~~~~~~~l~~~~~~~~iil~~~p-~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+|++.+++.+++..++..+++.+.. |||||. +|.++|++|++++|.| |+|.++..
T Consensus 189 ~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~D--e~~~~~g~ 253 (429)
T 1s0a_A 189 RDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD--EIATGFGR 253 (429)
T ss_dssp GGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEe--ehhhCCcc
Confidence 6899998888642234445554444 799994 7889999999999999 99987643
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.37 E-value=4.1e-13 Score=114.64 Aligned_cols=126 Identities=14% Similarity=0.003 Sum_probs=90.2
Q ss_pred CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCC--eEEecCCCchhHHH---
Q psy6266 44 NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYT--TFYYSKPTWENHRL--- 118 (218)
Q Consensus 44 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd--~V~i~~P~y~~y~~--- 118 (218)
...|.+..+..+|++++++++.. +.. +.+.+|++|+.++++++ +.+|| .|++++|+|+.+..
T Consensus 40 ~~~y~~~~~~~~l~~~la~~~~~---------~~~--i~~~~G~~a~~~al~~~--~~~gd~~~vi~~~~~~~~~~~~~~ 106 (357)
T 3lws_A 40 SDQYGTGAIIEPFEQKFADVLGM---------DDA--VFFPSGTMAQQVALRIW--SDETDNRTVAYHPLCHLEIHEQDG 106 (357)
T ss_dssp CEETTEETTHHHHHHHHHHHHTC---------SEE--EEESCHHHHHHHHHHHH--HHHHTCCEEEECTTCHHHHSSTTH
T ss_pred cccccCChHHHHHHHHHHHHhCC---------CcE--EEecCcHHHHHHHHHHH--hhcCCCcEEEecccceeeeeccch
Confidence 45788889999999999988732 111 34577788888887766 45787 77777777654332
Q ss_pred HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCc-HH--------HHHHHhhcCeEEEeeCCc
Q psy6266 119 VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT-AQ--------QVAHMVDKHHVYLLRSGR 189 (218)
Q Consensus 119 ~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPT-G~--------~l~~l~~~~~i~ii~D~r 189 (218)
.....|+ +++.++. +...+|++.+++.. . +.+++.++||||| |. +|.++|++|++++|.|
T Consensus 107 ~~~~~g~-~~~~v~~---~~~~~d~~~l~~~~----~-~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D-- 175 (357)
T 3lws_A 107 LKELHPI-ETILVGA---ADRLMTLDEIKALP----D-IACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLD-- 175 (357)
T ss_dssp HHHHSSC-EEEECSC---TTSCCCHHHHHTCC----S-CSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEE--
T ss_pred hhhccCc-EEEEecC---CCCCcCHHHHhcCc----C-cceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEE--
Confidence 3456687 7777763 23567888876542 2 3445557899999 64 6889999999999999
Q ss_pred eeec
Q psy6266 190 INMC 193 (218)
Q Consensus 190 ~~y~ 193 (218)
++|.
T Consensus 176 ~a~~ 179 (357)
T 3lws_A 176 GARL 179 (357)
T ss_dssp ETTH
T ss_pred Cchh
Confidence 7764
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.7e-13 Score=117.66 Aligned_cols=106 Identities=11% Similarity=0.102 Sum_probs=83.9
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecC-CCchhHHHHHH----------HhCCCcceeEeccCCcCccccHHHHHHHHh
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSK-PTWENHRLVFL----------NAGFTEAREYRYWNPEKRAVDFTGMYEDLV 151 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~-P~y~~y~~~~~----------~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~ 151 (218)
+.+|++|+.+++.++ +.|||+|++++ |.|+.+...+. ..|+ +++.++.. . .+.+|++.+++.+.
T Consensus 89 ~~sGt~Ai~~al~al--~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~-~~~~v~~~-~-~~~~d~e~l~~~l~ 163 (431)
T 3ht4_A 89 IISGTHAISTALFGI--LRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI-GYNAVPLT-E-GGLVDFEAVAAAIH 163 (431)
T ss_dssp SCSHHHHHHHHHHTT--CCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC-EEEECCBC-T-TSSBCHHHHHHHCC
T ss_pred eeCHHHHHHHHHHHh--CCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC-EEEEeCCC-C-CCCcCHHHHHhhcC
Confidence 346789999888766 68999999999 99999886553 3688 88888773 2 36789999999885
Q ss_pred cCCCCcEEEEcccCCCCcHH--------HHHHHhhc--CeEEEeeCCceeeccCCC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ--------QVAHMVDK--HHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~--------~l~~l~~~--~~i~ii~D~r~~y~~l~~ 197 (218)
. +...+++.++||||||. +|.++|++ ++++++.| ++|..+.+
T Consensus 164 ~--~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livD--ea~~~~~~ 215 (431)
T 3ht4_A 164 S--NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVD--NCYGEFIE 215 (431)
T ss_dssp T--TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEE--CTTCTTSS
T ss_pred C--CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEe--CCChhhcc
Confidence 3 22345555689999986 78899999 99999999 89988764
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.9e-12 Score=113.79 Aligned_cols=174 Identities=14% Similarity=0.066 Sum_probs=109.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|...++-| ..++.|.+|..+.++. ..+ +. ..+..++++++++++.. ..+ .++| +.|
T Consensus 54 ~~g~~~lD~~~~~~~~~lG--~~~p~v~~ai~~~~~~--~~~-~~-~~~~~~~~~~l~~~la~-~~g----~~~v--~~~ 120 (420)
T 2pb2_A 54 QQGKEYIDFAGGIAVTALG--HCHPALVEALKSQGET--LWH-TS-NVFTNEPALRLGRKLID-ATF----AERV--LFM 120 (420)
T ss_dssp TTCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHTT--CCC-CC-TTSCCHHHHHHHHHHHH-HSS----CSEE--EEE
T ss_pred CCCCEEEEccccccccccC--CCCHHHHHHHHHHHHh--ccc-cc-CccCCHHHHHHHHHHHh-hCC----CCeE--EEe
Confidence 4688889998884323445 2578888887776643 121 21 12233444445444432 111 2444 699
Q ss_pred ccChhHHHHHHHHHHHhc-----CC-CeEEecCCCchhHHH-HHHHhCCCccee---EeccCCcCc---cccHHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRIL-----NY-TTFYYSKPTWENHRL-VFLNAGFTEARE---YRYWNPEKR---AVDFTGMYEDL 150 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~-----~g-d~V~i~~P~y~~y~~-~~~~~g~~~~~~---~~~~~~~~~---~~d~~~~~~~l 150 (218)
.|+++|+.++++++.... +| ++|++++|+|..+.. .+...|. +... .|+. .+.. ..|++.+++.+
T Consensus 121 ~ggteA~~~al~~~~~~~~~~~~~g~~~vi~~~~~yh~~~~~~~~~~g~-~~~~~~~~p~~-~~~~~~~~~d~~~le~~i 198 (420)
T 2pb2_A 121 NSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQ-PKYSDGFGPKP-ADIIHVPFNDLHAVKAVM 198 (420)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHTCTTCCEEEEETTCCCCSSHHHHHHSSC-HHHHTTSSSCC-SCEEEECTTCHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCCCEEEEEeCCcCCcCHHHHHhcCC-ccccccCCCCC-CCeEEecCCCHHHHHHHh
Confidence 999999999988763211 67 499999999987654 4444554 3110 0110 0000 12788888877
Q ss_pred hcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 151 VNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 151 ~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
. +++.+++.++++||+|. +|.++|++|++++|.| ++|.++.+
T Consensus 199 ~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~D--ev~~g~~~ 249 (420)
T 2pb2_A 199 D---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFD--EVQCGMGR 249 (420)
T ss_dssp C---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEE--CTTTTTTT
T ss_pred c---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEE--cCCcCccc
Confidence 5 34555555677888883 6899999999999999 99988754
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-12 Score=113.08 Aligned_cols=128 Identities=13% Similarity=0.116 Sum_probs=97.6
Q ss_pred CccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH--
Q psy6266 44 NHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-- 119 (218)
Q Consensus 44 ~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-- 119 (218)
.+.|.. .....+|++++++++.. ++ .+++.+|++|+.++++++ +.+||+|++++|+|+++...
T Consensus 50 ~~~y~~~~~~~~~~l~~~la~~~g~---------~~--~i~~~sG~~ai~~~~~~~--~~~gd~vl~~~~~y~~~~~~~~ 116 (389)
T 3acz_A 50 GHIYSRLGNPTVEQFEEMVCSIEGA---------AG--SAAFGSGMGAISSSTLAF--LQKGDHLIAGDTLYGCTVSLFT 116 (389)
T ss_dssp CCCBTTTCCHHHHHHHHHHHHHHTC---------SE--EEEESSHHHHHHHHHTTT--CCTTCEEEEESSCCHHHHHHHH
T ss_pred CcccCCCCChHHHHHHHHHHHHhCC---------Ce--EEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHH
Confidence 344544 45567999999988733 12 246677789999888765 67999999999999986655
Q ss_pred --HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceee
Q psy6266 120 --FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 120 --~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y 192 (218)
++..|+ +++.++. .|++.+++.++ +++.+++..+|+||||. +|.++|+++++++|.| ++|
T Consensus 117 ~~~~~~g~-~~~~v~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD--~~~ 183 (389)
T 3acz_A 117 HWLPRFGI-EVDLIDT-------SDVEKVKAAWK---PNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVD--ATF 183 (389)
T ss_dssp HHHHHTTC-EEEEECT-------TCHHHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE--CTT
T ss_pred HHHHHcCC-EEEEECC-------CCHHHHHHhcC---CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEE--CCC
Confidence 467788 7887754 26778877774 34556666899999997 8999999999999999 998
Q ss_pred ccCCC
Q psy6266 193 CGLTT 197 (218)
Q Consensus 193 ~~l~~ 197 (218)
.....
T Consensus 184 ~~~~~ 188 (389)
T 3acz_A 184 TSPCF 188 (389)
T ss_dssp TCTTT
T ss_pred ccccc
Confidence 86543
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=114.46 Aligned_cols=179 Identities=8% Similarity=0.006 Sum_probs=106.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC--ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN--HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..|...||++.|.+..+-| ..++.|.+|+.+.++. ... ..|. .....+|++.+++++ + ...++| +
T Consensus 40 ~~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~-~~~~~~~~~-~~~~~~l~~~la~~~-~------~~~~~v--~ 106 (433)
T 1zod_A 40 ADGRAILDFTSGQMSAVLG--HCHPEIVSVIGEYAGK-LDHLFSEML-SRPVVDLATRLANIT-P------PGLDRA--L 106 (433)
T ss_dssp TTCCEEEETTHHHHTCTTC--BTCHHHHHHHHHHHHH-CCCCCTTCC-CHHHHHHHHHHHHHS-C------TTCCEE--E
T ss_pred CCCCEEEEcccchhccccC--CCCHHHHHHHHHHHHh-CcccccccC-CHHHHHHHHHHHHhC-C------CCcCEE--E
Confidence 3577788887775422334 2578888887776644 111 1221 122345555555443 2 223554 5
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCC-----------CcceeEeccC--CcCc--------c
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGF-----------TEAREYRYWN--PEKR--------A 140 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~-----------~~~~~~~~~~--~~~~--------~ 140 (218)
.|.|+++|+.++++++.....+|+|++++|+|..+......... ..+..++... ...+ .
T Consensus 107 ~~~gg~ea~~~a~~~~~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 186 (433)
T 1zod_A 107 LLSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYL 186 (433)
T ss_dssp EESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHH
T ss_pred EeCchHHHHHHHHHHHHHhhCCCeEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHH
Confidence 99999999999887643222458999999999876543332210 0122222100 0011 1
Q ss_pred ccHHHHHHHHhcCC-CCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 141 VDFTGMYEDLVNAP-DNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 141 ~d~~~~~~~l~~~~-~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+|++.+++.+++.. ++..+++.+..+||||. +|.++|++|++++|.| |+|.++..
T Consensus 187 ~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D--Ev~~~~g~ 251 (433)
T 1zod_A 187 AELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD--EAQTGVGR 251 (433)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred HHHHHHHHHHHhcCCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEe--ccccCCCc
Confidence 36888888886421 23444554434688994 7899999999999999 99998753
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-13 Score=114.06 Aligned_cols=148 Identities=11% Similarity=0.013 Sum_probs=97.5
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCc-CCCC----cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHH
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYL-PVLG----LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLH 98 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~-~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~ 98 (218)
..+++.|.+++.+.+.+ ...+|. ...+ ..++|+.+++++ + . ..+++| ++|.|+++|+.++++++
T Consensus 13 ~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~la~~~-g-~----~~~~~v--~~~~g~t~al~~~~~~l- 81 (362)
T 3ffr_A 13 SELYPTVRQHMITALDE--KIGVISHRSKKFEEVYKTASDNLKTLL-E-L----PSNYEV--LFLASATEIWERIIQNC- 81 (362)
T ss_dssp CCCCTTHHHHHHHHHHT--TTTTSCTTSHHHHHHHHHHHHHHHHHT-T-C----CTTEEE--EEESCHHHHHHHHHHHH-
T ss_pred cCCCHHHHHHHHHHhcC--CccCcCCCCHHHHHHHHHHHHHHHHHh-C-C----CCCcEE--EEeCCchHHHHHHHHhc-
Confidence 45677888776665543 121111 1222 234455555443 2 1 123443 58899999999999877
Q ss_pred HhcCCCeEEecCCCchhH-HHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----H
Q psy6266 99 RILNYTTFYYSKPTWENH-RLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----Q 172 (218)
Q Consensus 99 ~l~~gd~V~i~~P~y~~y-~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~ 172 (218)
+.| +.+++..|.|+.+ ...++..|+ +++.++. ...+.+|++.++ + ++++.+++.++||||||. +
T Consensus 82 -~~~-~~i~~~~~~~~~~~~~~~~~~g~-~~~~v~~--~~~~~~d~~~l~--~---~~~~~~v~~~~~~nptG~~~~l~~ 151 (362)
T 3ffr_A 82 -VEK-KSFHCVNGSFSKRFYEFAGELGR-EAYKEEA--AFGKGFYPADIT--V---PADAEIICLTHNETSSGVSMPVED 151 (362)
T ss_dssp -CSS-EEEEEECSHHHHHHHHHHHHTTC-EEEEEEC--CTTCCCCGGGCC--C---CTTCCEEEEESEETTTTEECCHHH
T ss_pred -cCC-cEEEEcCcHHHHHHHHHHHHhCC-CeEEEec--CCCCCCCHHHHh--c---cCCccEEEEEcCCCCcceeCCHHH
Confidence 556 6566677777733 346677898 8988887 234567887776 2 344555555689999997 7
Q ss_pred HHHHhhcC-eEEEeeCCceeecc
Q psy6266 173 VAHMVDKH-HVYLLRSGRINMCG 194 (218)
Q Consensus 173 l~~l~~~~-~i~ii~D~r~~y~~ 194 (218)
|.++|++| ++++|.| ++|..
T Consensus 152 i~~la~~~p~~~li~D--~a~~~ 172 (362)
T 3ffr_A 152 INTFRDKNKDALIFVD--AVSSL 172 (362)
T ss_dssp HTTSGGGSTTSEEEEE--CTTTT
T ss_pred HHHHHHhCCCCEEEEe--ccccc
Confidence 99999999 9999999 77663
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.8e-12 Score=112.94 Aligned_cols=124 Identities=13% Similarity=0.149 Sum_probs=96.4
Q ss_pred CcHHHHHHHHHHhcCCCCCCCcCCCceEEEE---eccChhHHHHHHHHHHHhcCCCeEEecC-CCchhHHHHH-------
Q psy6266 52 GLESFSSAATRMLLGGDASPPLREGRAFGVQ---TLSGTGALRVGAEFLHRILNYTTFYYSK-PTWENHRLVF------- 120 (218)
Q Consensus 52 G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~---t~G~~~al~~~~~~l~~l~~gd~V~i~~-P~y~~y~~~~------- 120 (218)
|..+|++.++++... +.. ++ |.+|++|+.+++.++ +.|||+|++++ |.|+.+...+
T Consensus 60 ~~~~Le~~lA~l~g~---------e~a--lv~p~~~sGt~Ai~~al~al--l~~GD~Vl~~~~~~y~~~~~~~~~~g~~~ 126 (409)
T 3jzl_A 60 GRDTLERVYATVFKT---------EAA--LVRPQIISGTHAISTVLFGI--LRPDDELLYITGQPYDTLEEIVGIRKQGQ 126 (409)
T ss_dssp HHHHHHHHHHHHHTC---------SEE--EEETTSCSHHHHHHHHHHHH--CCTTCEEEECSSSCCTTHHHHHTSSSSSS
T ss_pred HHHHHHHHHHHHhCC---------CcE--EEECCCccHHHHHHHHHHHh--cCCCCEEEEeCCCCcHhHHHHHhcccchh
Confidence 568899988887633 222 34 788999999888776 78999999998 9999988544
Q ss_pred ---HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc----CCCCcHH-----HHHHHhhc--CeEEEee
Q psy6266 121 ---LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC----AHNPTAQ-----QVAHMVDK--HHVYLLR 186 (218)
Q Consensus 121 ---~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~----p~NPTG~-----~l~~l~~~--~~i~ii~ 186 (218)
+..|+ +++.++.. +.+.+|++.++++++ +++++++..+ |+||||. +|.++|++ ++++++.
T Consensus 127 ~~l~~~G~-~~~~v~~~--~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~liv 200 (409)
T 3jzl_A 127 GSLKDFHI-GYSSVPLL--ENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFV 200 (409)
T ss_dssp SCTGGGTC-EEEECCCC--TTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred hHHHHcCC-EEEEeCCC--CCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEE
Confidence 55677 78887762 245689999999885 3445555455 9999997 78999999 9999999
Q ss_pred CCceeeccCC
Q psy6266 187 SGRINMCGLT 196 (218)
Q Consensus 187 D~r~~y~~l~ 196 (218)
| ++|..+.
T Consensus 201 D--~a~~~~~ 208 (409)
T 3jzl_A 201 D--NCYGEFV 208 (409)
T ss_dssp E--CTTCTTT
T ss_pred e--CCccccc
Confidence 9 8888665
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=116.65 Aligned_cols=126 Identities=13% Similarity=0.101 Sum_probs=93.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCe---EEecCCCchhHHH----HHHHhCCC
Q psy6266 54 ESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTT---FYYSKPTWENHRL----VFLNAGFT 126 (218)
Q Consensus 54 ~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~---V~i~~P~y~~y~~----~~~~~g~~ 126 (218)
.++|+.+++++ + ..+++| +.|.|+++++.++++++ +.|||+ |++++|.|+++.. .++..|+
T Consensus 114 ~~l~~~la~~~-g------~~~~~v--~~t~g~t~al~~~~~~~--~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~- 181 (465)
T 3e9k_A 114 ESIVGLMKDIV-G------ANEKEI--ALMNALTVNLHLLMLSF--FKPTPKRYKILLEAKAFPSDHYAIESQLQLHGL- 181 (465)
T ss_dssp HHHHGGGHHHH-T------CCGGGE--EECSCHHHHHHHHHHHH--CCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHc-C------CCcCCE--EEECCHHHHHHHHHHHh--ccccCCCCEEEEcCCcCCchHHHHHHHHHHcCC-
Confidence 56888888775 3 234555 58999999999988876 556555 9999999998544 5666888
Q ss_pred ccee--Eecc-CCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 127 EARE--YRYW-NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 127 ~~~~--~~~~-~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++.. ++.. ..+.+.+|++.+++.|.+..+++.+++.+++|||||. +|.++|++|+++++.| ++++
T Consensus 182 ~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D--~a~~ 254 (465)
T 3e9k_A 182 NIEESMRMIKPREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFD--LAHA 254 (465)
T ss_dssp CHHHHEEEECCCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEE--CTTT
T ss_pred cceeeeEEEecCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEE--hhhh
Confidence 7632 1111 1234567999999999643234566777899999997 8999999999999999 6654
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.1e-12 Score=109.23 Aligned_cols=114 Identities=13% Similarity=0.157 Sum_probs=87.6
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH----HHhCCCccee
Q psy6266 55 SFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF----LNAGFTEARE 130 (218)
Q Consensus 55 ~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~----~~~g~~~~~~ 130 (218)
+||+++++++.. + +. +++.+|++|+.++++++ +.+||+|++++|+|+++...+ +..|+ +++.
T Consensus 2 ~l~~~la~~~g~-------~-~~---i~~~sG~~a~~~~~~~~--~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~-~~~~ 67 (331)
T 1pff_A 2 ALEGKIAKLEHA-------E-AC---AATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV-EVDF 67 (331)
T ss_dssp HHHHHHHHHHTC-------S-EE---EEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC-EEEE
T ss_pred hHHHHHHHHhCC-------C-eE---EEeCChHHHHHHHHHHh--cCCCCEEEEcCCCcchHHHHHHHHHHhcCC-EEEE
Confidence 689999987732 1 22 34455589999988876 679999999999999987765 34788 7777
Q ss_pred EeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhc-CeEEEeeCCceeecc
Q psy6266 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDK-HHVYLLRSGRINMCG 194 (218)
Q Consensus 131 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~-~~i~ii~D~r~~y~~ 194 (218)
++. .|++.+++.++ +++.+++..+||||||. +|.++|++ +++++|.| ++|..
T Consensus 68 ~~~-------~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D--~a~~~ 125 (331)
T 1pff_A 68 IDM-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD--NTFAS 125 (331)
T ss_dssp ECT-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEE--CTTTH
T ss_pred eCC-------CCHHHHHHhhc---CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEE--CCCcc
Confidence 754 35667777664 34556666789999997 89999999 99999999 88864
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-12 Score=115.20 Aligned_cols=122 Identities=13% Similarity=0.078 Sum_probs=92.4
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH----HHhC
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF----LNAG 124 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~----~~~g 124 (218)
+..+..+||+++++++.. . +. +++.+|++|+.++++ + +.+||+|++++|.|++....+ +..|
T Consensus 65 ~~p~~~~l~~~la~~~g~-~-------~~---i~~~sG~~ai~~~~~-l--~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G 130 (403)
T 3cog_A 65 GNPTRNCLEKAVAALDGA-K-------YC---LAFASGLAATVTITH-L--LKAGDQIICMDDVYGGTNRYFRQVASEFG 130 (403)
T ss_dssp -CHHHHHHHHHHHHHHTC-S-------EE---EEESCHHHHHHHHHT-T--SCTTCEEEEESSCCHHHHHHHHHTGGGGT
T ss_pred CCchHHHHHHHHHHHhCC-C-------cE---EEECCHHHHHHHHHH-H--hCCCCEEEEeCCCcchHHHHHHHHHHHcC
Confidence 346778999999998743 1 22 244444689888877 5 679999999999999754433 4568
Q ss_pred CCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCe-EEEeeCCceeeccCCC
Q psy6266 125 FTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHH-VYLLRSGRINMCGLTT 197 (218)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~-i~ii~D~r~~y~~l~~ 197 (218)
+ +++.++.. |++.+++.++ +++.+++..+|+||||. +|.++|++++ +++|.| ++|....+
T Consensus 131 ~-~v~~v~~~-------d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD--~~~~~~~~ 196 (403)
T 3cog_A 131 L-KISFVDCS-------KIKLLEAAIT---PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVD--NTFMSPYF 196 (403)
T ss_dssp C-EEEEECTT-------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEE--CTTTCTTT
T ss_pred C-EEEEECCC-------CHHHHHHhcC---cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEE--CCCccccc
Confidence 8 78777541 6788888775 35566666899999997 8999999999 999999 99887654
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.35 E-value=2.9e-12 Score=110.98 Aligned_cols=124 Identities=9% Similarity=0.067 Sum_probs=93.8
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhC
Q psy6266 49 PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAG 124 (218)
Q Consensus 49 ~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g 124 (218)
+..+..+||+++++++.. . +.+ +.+.| ++|+.++++++ +.+||+|++++|+|++.... ++..|
T Consensus 50 ~~~~~~~l~~~la~~~~~-~-------~~i--~~~sG-t~a~~~~~~~~--~~~g~~vl~~~~~~~~~~~~~~~~~~~~g 116 (386)
T 1cs1_A 50 GNPTRDVVQRALAELEGG-A-------GAV--LTNTG-MSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDSLAKRGC 116 (386)
T ss_dssp CCHHHHHHHHHHHHHHTC-S-------EEE--EESSH-HHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHHHTTTS
T ss_pred CCccHHHHHHHHHHHhCC-C-------cEE--EeCCH-HHHHHHHHHHH--hCCCCEEEEecCCcHhHHHHHHHHHHhcC
Confidence 456789999999998743 1 222 34555 99999988876 67999999999999974433 35567
Q ss_pred CCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 125 FTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 125 ~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
+ +++.++. .|++.+++.+++ ++.+++..+|+||||. +|.++|+++++++|.| ++|.++...
T Consensus 117 ~-~~~~~~~-------~d~~~l~~~i~~---~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D--e~~~~~~~~ 182 (386)
T 1cs1_A 117 Y-RVLFVDQ-------GDEQALRAALAE---KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVD--NTFLSPALQ 182 (386)
T ss_dssp C-EEEEECT-------TCHHHHHHHHHT---CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEE--CTTTCTTTC
T ss_pred C-EEEEeCC-------CCHHHHHHhhcc---CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE--CCCcccccC
Confidence 7 6776643 277888888863 3334445689999997 8999999999999999 999877654
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.8e-13 Score=115.45 Aligned_cols=173 Identities=13% Similarity=0.074 Sum_probs=110.2
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++-|.+..+-| ..++.|++|..+.+++ ..+.| ..+..++++++++++.. ..+ .+++ +.|
T Consensus 33 ~~g~~~lD~~~~~~~~~lG--~~~p~v~~a~~~~~~~--~~~~~--~~~~~~~~~~l~~~la~-~~~----~~~v--~~~ 99 (395)
T 3nx3_A 33 DKAKKYLDFSSGIGVCALG--YNHAKFNAKIKAQVDK--LLHTS--NLYYNENIAAAAKNLAK-ASA----LERV--FFT 99 (395)
T ss_dssp TTCCEEEESSHHHHTCTTC--BSCHHHHHHHHHHHTT--CSCCC--TTSBCHHHHHHHHHHHH-HHT----CSEE--EEE
T ss_pred CCCCEEEECCCcHHhccCC--CCCHHHHHHHHHHHHh--ccccc--cccCCHHHHHHHHHHHH-hcC----CCeE--EEe
Confidence 4677889998885544555 3578899888776643 22322 23444555555555533 211 2444 699
Q ss_pred ccChhHHHHHHHHHHHh-----cCCCeEEecCCCchhHHHHHHHhCCCcceeE----eccCCcCc---cccHHHHHHHHh
Q psy6266 84 LSGTGALRVGAEFLHRI-----LNYTTFYYSKPTWENHRLVFLNAGFTEAREY----RYWNPEKR---AVDFTGMYEDLV 151 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l-----~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~----~~~~~~~~---~~d~~~~~~~l~ 151 (218)
.||++|+..+++++... .++|+|++++|+|..+.......+. .+... +.. .+.. ..|++.+++.++
T Consensus 100 ~gg~ea~~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~d~~~l~~~l~ 177 (395)
T 3nx3_A 100 NSGTESIEGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTA-NEKYQKPFKPLI-SGVKFAKYNDISSVEKLVN 177 (395)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCC-CHHHHGGGCSCC-SCEEEECTTCHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcC-CcccccccCCCC-CCcEEeCCCCHHHHHHhcc
Confidence 99999999988766433 4589999999999887654444433 22110 100 0000 116777776664
Q ss_pred cCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 152 NAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 152 ~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+++.+++..+++||+|. +|.++|++|++++|.| |+|.++.
T Consensus 178 ---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~D--ev~~~~g 226 (395)
T 3nx3_A 178 ---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIAD--EIQCGMG 226 (395)
T ss_dssp ---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEE--CTTTTTT
T ss_pred ---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE--ecccCCC
Confidence 34444554556777775 6889999999999999 9998774
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=9.2e-13 Score=116.58 Aligned_cols=179 Identities=9% Similarity=0.016 Sum_probs=107.3
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|.+...-| ..++.|.+|..+.++. . ..|.+..|..+.++++++++.. ... ...++| +.|
T Consensus 41 ~~g~~ylD~~~~~~~~~lG--~~~p~v~~A~~~~~~~--~-~~~~~~~~~~~~~~~la~~l~~-~~~--~~~~~v--~~~ 110 (448)
T 3dod_A 41 INGKEYYDGFSSVWLNVHG--HRKKELDDAIKKQLGK--I-AHSTLLGMTNVPATQLAETLID-ISP--KKLTRV--FYS 110 (448)
T ss_dssp TTSCEEEETTHHHHTCSSC--BSCHHHHHHHHHHHTT--C-SCCCCSSSEEHHHHHHHHHHHH-HSC--TTEEEE--EEE
T ss_pred CCCCEEEECCcchhhccCC--CCCHHHHHHHHHHHHh--c-cCccccccCCHHHHHHHHHHHH-hCC--CCCCEE--EEe
Confidence 4688889998886545556 3478899888777643 2 2355666777778888777744 221 122444 699
Q ss_pred ccChhHHHHHHHHHHHh--cCC----CeEEecCCCchhHHHHHHHhCCCcc-------------eeEeccCCcCc-----
Q psy6266 84 LSGTGALRVGAEFLHRI--LNY----TTFYYSKPTWENHRLVFLNAGFTEA-------------REYRYWNPEKR----- 139 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l--~~g----d~V~i~~P~y~~y~~~~~~~g~~~~-------------~~~~~~~~~~~----- 139 (218)
.||++|+..+++++... ++| |+|++++|+|..+......++. .+ ..++. .+.+
T Consensus 111 ~sGseA~~~al~~~~~~~~~~G~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 187 (448)
T 3dod_A 111 DSGAEAMEIALKMAFQYWKNIGKPEKQKFIAMKNGYHGDTIGAVSVGS-IELFHHVYGPLMFESYKAPI--PYVYRSESG 187 (448)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEEC------------------------------CEEECC--CCCTTSSSC
T ss_pred CchHHHHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCccHHHHHhcC-CccccccccCCCCCceEeCC--CccccCCcc
Confidence 99999999998876431 145 9999999999887654444333 22 12221 1100
Q ss_pred ------cccHHHHHHHHhcCCCCcEEEEcccCC-CCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 140 ------AVDFTGMYEDLVNAPDNSVIILHACAH-NPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 140 ------~~d~~~~~~~l~~~~~~~~iil~~~p~-NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
..|++.+++.|++..++..+++....+ |++|. +|.++|++|++++|.| |+|.++..
T Consensus 188 ~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~D--Ev~~g~g~ 259 (448)
T 3dod_A 188 DPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVD--EVATGFGR 259 (448)
T ss_dssp CHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEE--CTTTTTTT
T ss_pred chhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEe--ccccCCCc
Confidence 114777887776322233444444445 78874 7899999999999999 99998743
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.2e-12 Score=114.15 Aligned_cols=168 Identities=11% Similarity=0.012 Sum_probs=104.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|...++-| ..++.|.+|..+.++. .. .| .+..++++++++++.. ... ..++| +.|
T Consensus 54 ~~g~~~iD~~~~~~~~~lg--~~~~~v~~a~~~~~~~--~~-~~---~~~~~~~~~la~~l~~-~~~---~~~~v--~~~ 119 (453)
T 2cy8_A 54 VDGNVYLDFFGGHGALVLG--HGHPRVNAAIAEALSH--GV-QY---AASHPLEVRWAERIVA-AFP---SIRKL--RFT 119 (453)
T ss_dssp TTCCEEEESCTTTTSCTTC--BTCHHHHHHHHHHHTT--TC-SS---CSSCHHHHHHHHHHHH-HCT---TCSEE--EEE
T ss_pred CCCCEEEECcccHhhcccC--CCCHHHHHHHHHHHHh--CC-CC---CCCCHHHHHHHHHHHh-hCC---CCCEE--EEe
Confidence 3577788998885323344 2678899988777643 22 23 3577899999999854 321 23554 699
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH-----------hCCCc------ceeEeccCCcCccccHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN-----------AGFTE------AREYRYWNPEKRAVDFTGM 146 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~-----------~g~~~------~~~~~~~~~~~~~~d~~~~ 146 (218)
.|+++|+.+++++...+.++++|++++|+|+.+...+.. .|. . +..+++ .|++.+
T Consensus 120 ~gg~eA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~-------~d~~~l 191 (453)
T 2cy8_A 120 GSGTETTLLALRVARAFTGRRMILRFEGHYHGWHDFSASGYNSHFDGQPAPGV-LPETTANTLLIRP-------DDIEGM 191 (453)
T ss_dssp SCHHHHHHHHHHHHHHHHCCCEEEEECC-----------------------------CGGGEEEECT-------TCHHHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEEcCCcCCCchhhHhhcCCccCCCcCCCC-CccccCceeecCC-------CCHHHH
Confidence 999999999888632233568999999999876543222 122 1 111111 378888
Q ss_pred HHHHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 147 YEDLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 147 ~~~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
++.+++..++..+++.+..+||||. +|.++|++|++++|.| |+|.++
T Consensus 192 e~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~D--Ev~~g~ 247 (453)
T 2cy8_A 192 REVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILD--EVISGF 247 (453)
T ss_dssp HHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEE--CTTTTT
T ss_pred HHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--cCcccc
Confidence 8888642123344544434577885 6899999999999999 999988
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-12 Score=116.24 Aligned_cols=160 Identities=13% Similarity=0.080 Sum_probs=115.8
Q ss_pred CchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcC-------CCceEEEEeccChhHHHHHHHHHH
Q psy6266 26 VLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLR-------EGRAFGVQTLSGTGALRVGAEFLH 98 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-------~~~v~~~~t~G~~~al~~~~~~l~ 98 (218)
++..+.++.....+. ....|....+..+|.+++++++.. ..+.... .. ..++|.|+++|+.+++.+..
T Consensus 86 ~~~~~~~~~~~~~n~--~~~~~~~~~~~~~le~~~~~~la~-l~g~~~~~~~~~~~~~--~~v~t~ggTeA~~~al~~~~ 160 (486)
T 1js3_A 86 YPAMLADMLCGAIGC--IGFSWAASPACTELETVMMDWLGK-MLQLPEAFLAGEAGEG--GGVIQGSASEATLVALLAAR 160 (486)
T ss_dssp HHHHHHHHHHHHHCC--CCSSGGGCHHHHHHHHHHHHHHHH-HTTCCGGGCCTTTCSC--EEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCc--CccccccChhHHHHHHHHHHHHHH-HhCCCchhcccCCCCC--CeEEcCCcHHHHHHHHHHHH
Confidence 344566776666642 455688888899999998877632 2111110 12 24699999999888776542
Q ss_pred H-hcC------CC--------e--EEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCC---CcE
Q psy6266 99 R-ILN------YT--------T--FYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD---NSV 158 (218)
Q Consensus 99 ~-l~~------gd--------~--V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~---~~~ 158 (218)
. +.+ || + |++++|+|+++...++..|+ +++.+|. + +.+.+|++.+++.|.+.+. +.+
T Consensus 161 ~~~~~~~~~~~gd~~~~~~~~~~~v~~s~~~h~s~~~~~~~~G~-~v~~v~~-d-~~~~~d~~~L~~~i~~~~~~g~~p~ 237 (486)
T 1js3_A 161 TKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV-KLKAIPS-D-GKFAMRASALQEALERDKAAGLIPF 237 (486)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC-EEEEECC-C-TTSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHhhhhhccCccchhcccCCCEEEEECCCCcHHHHHHHHhCCC-ceEEeec-C-CCCCCCHHHHHHHHHHHHhCCCCce
Confidence 1 101 43 4 88899999999999999999 8999987 2 3567899999999965321 124
Q ss_pred EEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 159 IILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 159 iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+++.+.|+||||. +|+++|++|++|++.| .+|.+.
T Consensus 238 ~vv~~~~~n~tG~~~~l~~I~~la~~~~~~lhvD--~a~g~~ 277 (486)
T 1js3_A 238 FVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD--AAYAGS 277 (486)
T ss_dssp EEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE--CTTGGG
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHcCCEEEEe--hhhHHH
Confidence 5666789999998 8999999999999999 888864
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.6e-12 Score=114.16 Aligned_cols=182 Identities=8% Similarity=-0.032 Sum_probs=114.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++-|.+..+-| ..++.|.+|..+.+++ . ..|....|..+++.++++++.. .... ...++| +.|
T Consensus 61 ~~G~~ylD~~~~~~~~~lG--h~~p~v~~A~~~~~~~--~-~~~~~~~~~~~~~~~la~~l~~-~~~~-~~~~~v--~~~ 131 (453)
T 4ffc_A 61 ADGNSFIDLGAGIAVTTVG--ASHPAVAAAIADQATH--F-THTCFMVTPYEQYVQVAELLNA-LTPG-DHDKRT--ALF 131 (453)
T ss_dssp TTSCEEEESSHHHHTCTTC--TTCHHHHHHHHHHHHH--C-SCCTTTTSCCHHHHHHHHHHHH-HSSC-SSCEEE--EEE
T ss_pred CCCCEEEEcCCCcccCcCC--CCCHHHHHHHHHHHHh--c-cccccCcCCCHHHHHHHHHHHH-hCCC-CCCcEE--EEe
Confidence 5688889999886545566 3478888887776644 2 3366666777777777766643 2211 112444 689
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcc--------------eeEeccC--CcCcccc----H
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEA--------------REYRYWN--PEKRAVD----F 143 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~--------------~~~~~~~--~~~~~~d----~ 143 (218)
.||++|+..++++......++.|++++|+|..+......++. .+ ..++... .+.++.+ +
T Consensus 132 ~sGseA~~~alk~a~~~~g~~~ii~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 210 (453)
T 4ffc_A 132 NSGAEAVENAIKVARLATGRPAVVAFDNAYHGRTNLTMALTA-KSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAA 210 (453)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCC-CCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHH
T ss_pred CcHHHHHHHHHHHHHHhcCCCEEEEEcCccCCcchHHHhhcC-CCcccccCCCCCCCCcEEeCCCccccCccccchHHHH
Confidence 999999999987654323468999999999988766655544 21 2233210 0111121 2
Q ss_pred HHHHHHHhcC-CCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 144 TGMYEDLVNA-PDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 144 ~~~~~~l~~~-~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+...+.|++. .+.+...+.+.|.||+|. +|.++|++|++++|.| |+|.+|..
T Consensus 211 ~~~~~~l~~~i~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~D--Ev~~g~g~ 273 (453)
T 4ffc_A 211 RRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIAD--EVQTGFAR 273 (453)
T ss_dssp HHHHHHHHHHTCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEe--cCccCCCc
Confidence 2223333321 223344444578888873 6999999999999999 99998743
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.2e-13 Score=116.29 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=107.8
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCC---CcHH--HHH-----HHHHHhcCCCCCCCcCCC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVL---GLES--FSS-----AATRMLLGGDASPPLREG 76 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~---G~~~--lr~-----aia~~~~~~~~~~~~~~~ 76 (218)
...|||+.|. + +.++.|.+|..+.+.+ ...++|..+. |.+. +++ .+++++ + .+++
T Consensus 23 ~~~i~~~~~~-----~--~~~~~v~~a~~~~~~~-~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~-g------~~~~ 87 (407)
T 2dkj_A 23 REGLELIASE-----N--FVSKQVREAVGSVLTN-KYAEGYPGARYYGGCEVIDRVESLAIERAKALF-G------AAWA 87 (407)
T ss_dssp HTSEECCTTC-----C--CCCHHHHHHHTSGGGG-CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-T------CSEE
T ss_pred hcceeeccCC-----C--CCCHHHHHHHHhhhhc-CcccCCCcccccCCchHHHHHHHHHHHHHHHHh-C------CCcc
Confidence 3568888884 2 2388899888776642 1245676543 7664 455 344433 3 2222
Q ss_pred ceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhH---HHHHHHhCCCcceeEecc-CCcCccccHHHHHHHHhc
Q psy6266 77 RAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENH---RLVFLNAGFTEAREYRYW-NPEKRAVDFTGMYEDLVN 152 (218)
Q Consensus 77 ~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y---~~~~~~~g~~~~~~~~~~-~~~~~~~d~~~~~~~l~~ 152 (218)
.+ ++|.| ++|+.++++++ +.+||+|++++|+|+.| ...++..|. .+..+++. .++.+.+|++.+++.+++
T Consensus 88 ~i--~~~sG-t~a~~~~~~~~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~d~~~l~~~l~~ 161 (407)
T 2dkj_A 88 NV--QPHSG-SQANMAVYMAL--MEPGDTLMGMDLAAGGHLTHGSRVNFSGK-LYKVVSYGVRPDTELIDLEEVRRLALE 161 (407)
T ss_dssp EC--CCSSH-HHHHHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHH-HSEEEEECCCTTTSSCCHHHHHHHHHH
T ss_pred eE--Eecch-HHHHHHHHHHh--cCCCCEEEEecccccCccchHHHHHhcCc-eEEEEecCCCcccCccCHHHHHHHHhh
Confidence 22 34555 56999888876 67999999999999998 344455555 44455442 223467899999998863
Q ss_pred CCCCcEEEEcccCCCCcHH---HHHHHhhcCeEEEeeCCceeecc
Q psy6266 153 APDNSVIILHACAHNPTAQ---QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 153 ~~~~~~iil~~~p~NPTG~---~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
. +...+++ ++|+||+-. +|.++|++|++++|.| ++|..
T Consensus 162 ~-~~~~v~~-~~p~~~~~~~l~~i~~l~~~~~~~li~D--ea~~~ 202 (407)
T 2dkj_A 162 H-RPKVIVA-GASAYPRFWDFKAFREIADEVGAYLVVD--MAHFA 202 (407)
T ss_dssp H-CCSEEEE-CCSSCCSCCCHHHHHHHHHHHTCEEEEE--CTTTH
T ss_pred c-CCeEEEE-eccccCCCCCHHHHHHHHHHcCCEEEEE--ccccc
Confidence 1 2234444 789999543 8999999999999999 88775
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.7e-12 Score=111.64 Aligned_cols=130 Identities=12% Similarity=0.125 Sum_probs=97.7
Q ss_pred cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE---eccChhHHHHHHHHHHHhcCCCeEEecC-CCchhHHHH--
Q psy6266 46 EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ---TLSGTGALRVGAEFLHRILNYTTFYYSK-PTWENHRLV-- 119 (218)
Q Consensus 46 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~---t~G~~~al~~~~~~l~~l~~gd~V~i~~-P~y~~y~~~-- 119 (218)
.|... |..+|++.++++... +.. ++ +.+|++|+.+++.++ ++|||+|++++ |.|+.+...
T Consensus 70 ~Y~~~-g~~~Le~~lA~l~g~---------e~a--lv~p~~~sGt~A~~~al~al--l~pGD~Vl~~~~~~y~~~~~~~g 135 (427)
T 3hvy_A 70 GYNDI-GRDSLDRVYANIFNT---------ESA--FVRPHFVNGTHAIGAALFGN--LRPNDTMMSICGMPYDTLHDIIG 135 (427)
T ss_dssp CTTCH-HHHHHHHHHHHHHTC---------SEE--EEETTCCSHHHHHHHHHHHT--CCTTCEEEECSSSCCGGGHHHHT
T ss_pred CCCch-hHHHHHHHHHHHhCC---------Cce--EEeCCCCcHHHHHHHHHHHh--cCCCCEEEEeCCCCchhHHHHhc
Confidence 34433 678899988877633 222 35 788899999888776 78999999999 999988743
Q ss_pred ---------HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc----CCCCcHH-----HHHHHhhc--
Q psy6266 120 ---------FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC----AHNPTAQ-----QVAHMVDK-- 179 (218)
Q Consensus 120 ---------~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~----p~NPTG~-----~l~~l~~~-- 179 (218)
++..|+ +++.++. +.+.+|++.+++.+++. +++++++..+ |+||||. +|.++|++
T Consensus 136 ~~~~~~~~~l~~~G~-~~~~v~~---~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~ 210 (427)
T 3hvy_A 136 MDDSKKVGSLREYGV-KYKMVDL---KDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVN 210 (427)
T ss_dssp CCTTCCSCCTGGGTC-EEEECCC---BTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHC
T ss_pred cccchhhhHHHHcCC-EEEEecC---CCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhC
Confidence 345687 7877766 34678999999999731 2344444444 9999996 78999999
Q ss_pred CeEEEeeCCceeeccCC
Q psy6266 180 HHVYLLRSGRINMCGLT 196 (218)
Q Consensus 180 ~~i~ii~D~r~~y~~l~ 196 (218)
++++++.| ++|..+.
T Consensus 211 ~g~~livD--~a~~~~~ 225 (427)
T 3hvy_A 211 ENVIVFVD--NCYGEFV 225 (427)
T ss_dssp SSSEEEEE--CTTCTTT
T ss_pred CCCEEEEE--CCccccc
Confidence 89999999 8887665
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.32 E-value=6.1e-12 Score=112.57 Aligned_cols=182 Identities=10% Similarity=-0.002 Sum_probs=121.4
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||++-|.+...-| ..+|.|++|.++.++. ..+ |....|..+++.++++++.. ... ...++| +.
T Consensus 50 d~~G~~ylD~~s~~~~~~lG--h~~p~v~~A~~~~l~~--~~~-~~~~~~~~~~~~~la~~l~~-~~~--~~~~~v--~~ 119 (476)
T 3i5t_A 50 TEDGRRLIDGPAGMWCAQVG--YGRREIVDAMAHQAMV--LPY-ASPWYMATSPAARLAEKIAT-LTP--GDLNRI--FF 119 (476)
T ss_dssp ETTCCEEEETTHHHHTCTTC--BCCHHHHHHHHHHHHH--CCC-CCTTTCBCHHHHHHHHHHHT-TSS--TTCCEE--EE
T ss_pred ECCCCEEEECCCchhhccCC--CCCHHHHHHHHHHHHh--ccC-cccCccCCHHHHHHHHHHHh-cCC--CCcCEE--EE
Confidence 35688888988885545556 3578899887776644 233 33336778889999998865 432 223454 69
Q ss_pred eccChhHHHHHHHHHHHh------cCCCeEEecCCCchhHHHHHHHhCCCcce-------------eEeccCC-cCcccc
Q psy6266 83 TLSGTGALRVGAEFLHRI------LNYTTFYYSKPTWENHRLVFLNAGFTEAR-------------EYRYWNP-EKRAVD 142 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l------~~gd~V~i~~P~y~~y~~~~~~~g~~~~~-------------~~~~~~~-~~~~~d 142 (218)
|.||++|+..+++++... ..++.|++.+|+|..+......++. .+. .++.... .....+
T Consensus 120 ~~sGseA~~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 198 (476)
T 3i5t_A 120 TTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTG-RTGNWPNFDIAQDRISFLSSPNPRHAGNRS 198 (476)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCC-CGGGCTTSCCCCTTEEEECCCCGGGCTTSC
T ss_pred eCchHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccC-ChhhccccCCCCCCcEEeCCCcccccCCCc
Confidence 999999999998876432 2367999999999998876666655 332 1111000 000111
Q ss_pred --------HHHHHHHHhcCC-CCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 143 --------FTGMYEDLVNAP-DNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 143 --------~~~~~~~l~~~~-~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
++.+++.+.+.. ++..+++..+++|++|. +|.++|++|++++|.| |+|.+|..
T Consensus 199 ~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~D--Ev~~g~gr 269 (476)
T 3i5t_A 199 QEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISD--EVVTGFGR 269 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTTTT
T ss_pred hHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE--ecccCCcc
Confidence 567777775321 23455555667888875 7899999999999999 99998743
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.1e-11 Score=109.77 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=96.4
Q ss_pred CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE---eccChhHHHHHHHHHHHhcCCCeEEecC-CCchhHHHHH------
Q psy6266 51 LGLESFSSAATRMLLGGDASPPLREGRAFGVQ---TLSGTGALRVGAEFLHRILNYTTFYYSK-PTWENHRLVF------ 120 (218)
Q Consensus 51 ~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~---t~G~~~al~~~~~~l~~l~~gd~V~i~~-P~y~~y~~~~------ 120 (218)
.|..+|++.++++... +.. ++ +.+|++|+.+++.++ ++|||+|++++ |.|+.+...+
T Consensus 73 ~~~~~Le~~lA~l~g~---------e~a--lv~p~~~sGt~Ai~~al~al--l~pGD~Vl~~~~~~y~~~~~~~g~~~~~ 139 (427)
T 3i16_A 73 IGRDSLDAVYARVFNT---------ESA--LVRPHFVNGTHALGAALFGN--LRPGNTMLSVCGEPYDTLHDVIGITENS 139 (427)
T ss_dssp HHHHHHHHHHHHHHTC---------SEE--EEETTCCSHHHHHHHHHHHH--CCTTCEEEESSSSCCGGGHHHHTCSCCC
T ss_pred HHHHHHHHHHHHHhCC---------cce--EEeCCCccHHHHHHHHHHHH--hCCCCEEEEeCCCccHHHHHHHhccccc
Confidence 3678899888877633 111 35 788899999888776 78999999999 9999887544
Q ss_pred -----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc----CCCCcHH-----HHHHHhhc--CeEEE
Q psy6266 121 -----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC----AHNPTAQ-----QVAHMVDK--HHVYL 184 (218)
Q Consensus 121 -----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~----p~NPTG~-----~l~~l~~~--~~i~i 184 (218)
+..|+ +++.++.. +.+.+|++.+++.+++. +++++++..+ |+||||. +|.++|++ +++++
T Consensus 140 ~~~~l~~~G~-~~~~v~~~--~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~l 215 (427)
T 3i16_A 140 NMGSLKEFGI-NYKQVDLK--EDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIIC 215 (427)
T ss_dssp SSCCTGGGTC-EEEECCCC--TTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEE
T ss_pred hHHHHHHcCC-EEEEecCc--cCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEE
Confidence 45577 77777762 23568999999999732 2344444445 9999996 78999999 99999
Q ss_pred eeCCceeeccCC
Q psy6266 185 LRSGRINMCGLT 196 (218)
Q Consensus 185 i~D~r~~y~~l~ 196 (218)
+.| ++|..+.
T Consensus 216 ivD--~a~~~~~ 225 (427)
T 3i16_A 216 FVD--NCYGEFM 225 (427)
T ss_dssp EEE--CTTTTTS
T ss_pred EEE--CCCcccc
Confidence 999 8888765
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.30 E-value=7.6e-12 Score=110.44 Aligned_cols=168 Identities=13% Similarity=0.102 Sum_probs=101.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC--ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN--HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
..|...||++.|....+-| ..++.|.+|..+.++. ... ..| +.....+|++.+++++ + .++| +
T Consensus 62 ~~G~~ylD~~~g~~~~~lg--h~~p~v~~ai~~~~~~-~~~~~~~~-~~~~~~~l~~~la~~~-g--------~~~v--~ 126 (433)
T 1z7d_A 62 VNDKRYYDFLSAYSSVNQG--HCHPNILNAMINQAKN-LTICSRAF-FSVPLGICERYLTNLL-G--------YDKV--L 126 (433)
T ss_dssp TTCCEEEESSHHHHTTTTC--BTCHHHHHHHHHHHTT-CSCCCTTS-EEHHHHHHHHHHHHHH-T--------CSEE--E
T ss_pred CCCCEEEEcccchhhcccC--CCCHHHHHHHHHHHHh-CCCccCCc-CCHHHHHHHHHHHhhc-C--------CCeE--E
Confidence 4678888988875322222 2678899888776643 111 112 2233456666666654 2 1444 5
Q ss_pred EeccChhHHHHHHHHHHHh-------cCC-CeEEecCCCchhHHH-HHHHhCC-----------CcceeEeccCCcCccc
Q psy6266 82 QTLSGTGALRVGAEFLHRI-------LNY-TTFYYSKPTWENHRL-VFLNAGF-----------TEAREYRYWNPEKRAV 141 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l-------~~g-d~V~i~~P~y~~y~~-~~~~~g~-----------~~~~~~~~~~~~~~~~ 141 (218)
.|.|+++|+.++++++..+ .+| |+|++++|+|..+.. .+...|. .++..+|+ .
T Consensus 127 ~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~-------~ 199 (433)
T 1z7d_A 127 MMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPY-------D 199 (433)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--------------------------CEEEECT-------T
T ss_pred EeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCC-------C
Confidence 8999999999988865321 468 999999999987643 3333331 01222221 2
Q ss_pred cHHHHHHHHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 142 DFTGMYEDLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 142 d~~~~~~~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
|++.+++.++. ++..+++.+..+|+||. +|.++|++|++++|.| |+|.++..
T Consensus 200 d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~~g~g~ 260 (433)
T 1z7d_A 200 DLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVAD--EVQTGLGR 260 (433)
T ss_dssp CHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTTTT
T ss_pred CHHHHHHHhCC--CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEe--cCccCCCc
Confidence 78888888852 34445554444667884 7899999999999999 99988643
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-13 Score=114.84 Aligned_cols=141 Identities=12% Similarity=0.005 Sum_probs=96.7
Q ss_pred CchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCe
Q psy6266 26 VLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTT 105 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~ 105 (218)
+++.|.+|..+.. ....|.+..+..+||+++++++.. +.. +.+.||++|+.++++++ +.+||+
T Consensus 27 ~~p~v~~ai~~~~----~~~~~~~~~~~~~l~~~la~~~~~---------~~~--i~~~~g~~a~~~a~~~~--~~~g~~ 89 (359)
T 3pj0_A 27 VLTEALQNIDDNL----ESDIYGNGAVIEDFETKIAKILGK---------QSA--VFFPSGTMAQQIALRIW--ADRKEN 89 (359)
T ss_dssp HHHHHTTTSCTTC----BCCBTTBSHHHHHHHHHHHHHHTC---------SEE--EEESCHHHHHHHHHHHH--HHHHTC
T ss_pred CCHHHHHHHHhhc----ccCcccCCHHHHHHHHHHHHHhCC---------CcE--EEeCCHHHHHHHHHHHH--HhcCCC
Confidence 4567776654422 235688888999999999988732 111 35577788998888776 457886
Q ss_pred --EEecCCCchhHH---HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcH-H--------
Q psy6266 106 --FYYSKPTWENHR---LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA-Q-------- 171 (218)
Q Consensus 106 --V~i~~P~y~~y~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG-~-------- 171 (218)
|++++|+++.+. ......|+ +++.++. +.+.+|++.+++. . +++.+++.++|||||| .
T Consensus 90 ~vvi~~~~~~~~~~~~~~~~~~~g~-~~~~v~~---~~~~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~ 161 (359)
T 3pj0_A 90 RRVAYHPLSHLEIHEQDGLKELQQI-TPLLLGT---ANQLLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELE 161 (359)
T ss_dssp CEEEECTTCHHHHSSTTHHHHHHCC-EEEECSC---TTSCCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHH
T ss_pred cEEEEeccceeeehhcchHHHhcCc-eEEecCC---cCCCcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHH
Confidence 555656654332 22255688 8888765 2457898888765 2 3444555578999995 4
Q ss_pred HHHHHhhcCeEEEeeCCceeec
Q psy6266 172 QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 172 ~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+|.++|++|++++|.| ++|.
T Consensus 162 ~l~~~~~~~~~~li~D--~a~~ 181 (359)
T 3pj0_A 162 KISEYCHEQGISLHLD--GARL 181 (359)
T ss_dssp HHHHHHHHHTCEEEEE--ETTC
T ss_pred HHHHHHHHcCCEEEEE--Ccch
Confidence 5699999999999999 6654
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.3e-12 Score=117.19 Aligned_cols=165 Identities=11% Similarity=0.040 Sum_probs=105.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCcc------CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCc--eE
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHE------YLPVLGLESFSSAATRMLLGGDASPPLREGR--AF 79 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~------Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~--v~ 79 (218)
++|+|..|. .++++.|++|+.+.+.. ....+ |....+..++++++.+++.. ..+ .+.++ ..
T Consensus 45 ~~i~L~a~e-------~~~~~~V~eA~~~~l~~-~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~-~~g--~~~~~~~~~ 113 (483)
T 1rv3_A 45 VGLELIASE-------NFASRAVLEALGSCLNN-KYSLGYPGQRYYGGTEHIDELETLCQKRALQ-AYG--LDPQCWGVN 113 (483)
T ss_dssp SSEECCTTC-------CCCCHHHHHHHTSGGGT-CCCCEETTEESSSCCHHHHHHHHHHHHHHHH-HTT--CCTTTEEEE
T ss_pred cCeEEEcCC-------CCCCHHHHHHHHHHHhc-cCcccCCCccccCcchhHHHHHHHHHHHHHH-HhC--CCcccCceE
Confidence 568887773 24789999998776643 11112 34444567777666555422 211 22222 22
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH--------HHHHhCCCcceeEecc-CCcCccccHHHHHHHH
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL--------VFLNAGFTEAREYRYW-NPEKRAVDFTGMYEDL 150 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~--------~~~~~g~~~~~~~~~~-~~~~~~~d~~~~~~~l 150 (218)
++.|.|+ +++.++++++ ++|||+|++++|.|+++.. .++..|. .++.+++. +++.+.+|++.+++.+
T Consensus 114 V~~~sGs-~an~~~~~al--l~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~-~~~~v~~~~~~~~~~iD~d~le~~i 189 (483)
T 1rv3_A 114 VQPYSGS-PANFAVYTAL--VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSI-FFESMAYKVNPDTGYIDYDRLEENA 189 (483)
T ss_dssp CCCSSHH-HHHHHHHHHH--TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHH-HSEEEEECBCTTTCSBCHHHHHHHH
T ss_pred EEECCcH-HHHHHHHHHh--cCCCCEEEEecCccCcCcchhhhhcccCcccccc-eEEEEECccccCCCcCCHHHHHHHH
Confidence 2466666 7777777766 7899999999999988753 2233442 24444441 2245678999999998
Q ss_pred hcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 151 VNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 151 ~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.+. ++++++. +++||| . +|.++|++++++++.| +++.
T Consensus 190 ~~~--~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD--~ah~ 231 (483)
T 1rv3_A 190 RLF--HPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMAD--MAHI 231 (483)
T ss_dssp HHH--CCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEE--CTTT
T ss_pred hhc--CCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEE--ccch
Confidence 732 2334444 678888 5 7999999999999999 7743
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-11 Score=108.50 Aligned_cols=140 Identities=15% Similarity=0.115 Sum_probs=101.9
Q ss_pred CchHHHHHHHHHhhcCCCCccCcCCCC--cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 26 VLPVVRQAEKELAADDSLNHEYLPVLG--LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~~Y~~~~G--~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
.++.+.++....... ...+.|+...+ ..+||+++++++.. . .. +.+.+|++|+.++++++ +.+|
T Consensus 32 ~~~~~~~~~~~~~~~-~~~~~y~~~~~~~~~~l~~~la~~~g~-~--------~~--v~~~sGt~A~~~~l~~~--~~~g 97 (421)
T 2ctz_A 32 VFKSPEHAANLFALK-EFGNIYSRIMNPTVDVLEKRLAALEGG-K--------AA--LATASGHAAQFLALTTL--AQAG 97 (421)
T ss_dssp CCSCHHHHHHHHTTT-TGGGSCBTTBCHHHHHHHHHHHHHHTC-S--------EE--EEESSHHHHHHHHHHHH--CCTT
T ss_pred eeCCHHHHHHhhccc-cCCCcccCCCChHHHHHHHHHHHHhCC-C--------ce--EEecCHHHHHHHHHHHH--hCCC
Confidence 455666654433211 22455765433 58899999988743 1 11 34455599999988876 6799
Q ss_pred CeEEecCCCchhHHHHH----HHhCCCcceeE-eccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HH
Q psy6266 104 TTFYYSKPTWENHRLVF----LNAGFTEAREY-RYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 104 d~V~i~~P~y~~y~~~~----~~~g~~~~~~~-~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l 173 (218)
|+|++++|.|+++...+ +..|+ +++.+ +. .|++.+++.++ +++.+++..+++||||. +|
T Consensus 98 d~vi~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~-------~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~l~~i 166 (421)
T 2ctz_A 98 DNIVSTPNLYGGTFNQFKVTLKRLGI-EVRFTSRE-------ERPEEFLALTD---EKTRAWWVESIGNPALNIPDLEAL 166 (421)
T ss_dssp CEEEECSCCCHHHHHHHHTHHHHTTC-EEEECCTT-------CCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHH
T ss_pred CEEEEeCCCchHHHHHHHHHHHHcCC-EEEEECCC-------CCHHHHHHhhc---cCCeEEEEECCCCCCCcccCHHHH
Confidence 99999999999987665 67788 77766 43 16788888775 34566666899999997 89
Q ss_pred HHHhhcCeEEEeeCCceee
Q psy6266 174 AHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~r~~y 192 (218)
.++|+++++++|.| ++|
T Consensus 167 ~~~a~~~g~~livD--~~~ 183 (421)
T 2ctz_A 167 AQAAREKGVALIVD--NTF 183 (421)
T ss_dssp HHHHHHHTCEEEEE--CGG
T ss_pred HHHHHHcCCEEEEE--CCc
Confidence 99999999999999 888
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.3e-11 Score=107.56 Aligned_cols=168 Identities=11% Similarity=0.127 Sum_probs=110.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC-ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN-HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||++.|....+-| ..++.|.+|..+.++..... ..| +..-..+|++.+++++ + .+++ +.
T Consensus 73 ~~g~~ylD~~sg~~~~~lg--h~~p~v~~Ai~~~~~~~~~~~~~~-~~~~~~~l~~~la~~~-g--------~~~v--~~ 138 (439)
T 2oat_A 73 VEGRKYFDFLSSYSAVNQG--HCHPKIVNALKSQVDKLTLTSRAF-YNNVLGEYEEYITKLF-N--------YHKV--LP 138 (439)
T ss_dssp TTCCEEEESSGGGGTTTTC--BTCHHHHHHHHHHHTTCSCCCTTS-EESSHHHHHHHHHHHH-T--------CSEE--EE
T ss_pred CCCCEEEEccCCcccccCC--CCCHHHHHHHHHHHHhcCcccCcc-CCHHHHHHHHHHHHhc-C--------CCEE--EE
Confidence 4678889998885222222 26788998887766431101 113 3445678888887765 3 1344 68
Q ss_pred eccChhHHHHHHHHHHHh-------cCC-CeEEecCCCchhHH-HHHHHhC------------CCcceeEeccCCcCccc
Q psy6266 83 TLSGTGALRVGAEFLHRI-------LNY-TTFYYSKPTWENHR-LVFLNAG------------FTEAREYRYWNPEKRAV 141 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l-------~~g-d~V~i~~P~y~~y~-~~~~~~g------------~~~~~~~~~~~~~~~~~ 141 (218)
|.|+++|+.++++++..+ .+| |+|++++|+|..+. ..+...| . +++.+|+ .
T Consensus 139 ~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~-~v~~~~~-------~ 210 (439)
T 2oat_A 139 MNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMP-GFDIIPY-------N 210 (439)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCT-TEEEECS-------S
T ss_pred eCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCC-CeEEeCC-------C
Confidence 999999999988875321 367 89999999997754 3444334 2 2333322 2
Q ss_pred cHHHHHHHHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 142 DFTGMYEDLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 142 d~~~~~~~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
|++.+++.++. ++..+++....+|+||. +|.++|++|++++|.| |+|.++..
T Consensus 211 d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D--Ev~~g~g~ 271 (439)
T 2oat_A 211 DLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD--EIQTGLAR 271 (439)
T ss_dssp CHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTTTT
T ss_pred CHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCCcc
Confidence 78888888852 34455554444567884 7899999999999999 99988643
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.29 E-value=4.4e-12 Score=112.49 Aligned_cols=183 Identities=9% Similarity=-0.045 Sum_probs=116.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++-|.+...-| ..++.|.+|..+.++. . ..|.+..|..+.+.++++++.. .... ...++| +.|
T Consensus 58 ~~g~~ylD~~~~~~~~~lG--h~~p~v~~A~~~~~~~--~-~~~~~~~~~~~~~~~la~~l~~-~~~~-~~~~~v--~~~ 128 (451)
T 3oks_A 58 VDGNRLIDLGSGIAVTTVG--NSAPKVVEAVRSQVGD--F-THTCFMVTPYEGYVAVCEQLNR-LTPV-RGDKRS--ALF 128 (451)
T ss_dssp TTSCEEEESSHHHHTCTTC--TTCHHHHHHHHHHHTT--C-SCCTTTTSCCHHHHHHHHHHHH-HSSC-CSSEEE--EEE
T ss_pred CCCCEEEEcCCCccccccC--CCCHHHHHHHHHHHHh--c-ccccCCccCCHHHHHHHHHHHH-hCCc-CCCCEE--EEe
Confidence 5688889998886545556 3478899887776643 2 3477667777777777777643 2211 112444 699
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCC-------------cceeEeccC--------CcCc---
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFT-------------EAREYRYWN--------PEKR--- 139 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~-------------~~~~~~~~~--------~~~~--- 139 (218)
.||++|+..++++......++.|++.+|+|..+......++.. .+..++... .+..
T Consensus 129 ~sGseA~~~Alk~a~~~~g~~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (451)
T 3oks_A 129 NSGSEAVENAVKIARSHTHKPAVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDG 208 (451)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCH
T ss_pred CcHHHHHHHHHHHHHHhcCCCeEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhh
Confidence 9999999999876543234589999999999887666555441 122333210 0000
Q ss_pred cccHHHHHHHHhcC-CCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 140 AVDFTGMYEDLVNA-PDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 140 ~~d~~~~~~~l~~~-~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
..+++.+.+.|++. .+.+...+...|.|++|. +|.++|++|++++|.| |+|.++..
T Consensus 209 ~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~D--Ev~~g~g~ 275 (451)
T 3oks_A 209 ELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIAD--EVQTGFAR 275 (451)
T ss_dssp HHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTTTT
T ss_pred HHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEE--ecccCCCc
Confidence 01355555555431 222333333467777763 7899999999999999 99998743
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.3e-12 Score=111.47 Aligned_cols=181 Identities=8% Similarity=0.014 Sum_probs=110.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC-CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV-LGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||++.|....+-| ..++.|.+|..+.++. .. |... .|..++++++++.+.. ... ...++| +.
T Consensus 47 ~~g~~~lD~~~~~~~~~lG--~~~~~v~~a~~~~~~~--~~--~~~~~~~~~~~~~~l~~~la~-~~~--~~~~~v--~~ 115 (449)
T 3a8u_X 47 DKGRKVYDSLSGLWTCGAG--HTRKEIQEAVAKQLST--LD--YSPGFQYGHPLSFQLAEKITD-LTP--GNLNHV--FF 115 (449)
T ss_dssp TTCCEEEETTHHHHTCTTC--BSCHHHHHHHHHHTTT--CS--CCCSSSCCCHHHHHHHHHHHT-TSS--TTEEEE--EE
T ss_pred CCCCEEEECCccHhhccCC--CCCHHHHHHHHHHHHh--CC--CccccccCCHHHHHHHHHHHH-hCC--CCCCEE--EE
Confidence 3567788887775322334 2378899888776643 11 3222 4555566666666543 221 233444 69
Q ss_pred eccChhHHHHHHHHHHHhc------CCCeEEecCCCchhHH-HHHHHhCC-----------CcceeEec---cCCcCccc
Q psy6266 83 TLSGTGALRVGAEFLHRIL------NYTTFYYSKPTWENHR-LVFLNAGF-----------TEAREYRY---WNPEKRAV 141 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~------~gd~V~i~~P~y~~y~-~~~~~~g~-----------~~~~~~~~---~~~~~~~~ 141 (218)
|.|+++|+.++++++.... ++|+|++++|+|..+. ..+...|. ..+..++. +...-.++
T Consensus 116 ~~ggsea~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 195 (449)
T 3a8u_X 116 TDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRG 195 (449)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSS
T ss_pred cCcHHHHHHHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccC
Confidence 9999999999888663211 6899999999998764 34454431 01222322 11000023
Q ss_pred c--------HHHHHHHHhcCC-CCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 142 D--------FTGMYEDLVNAP-DNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 142 d--------~~~~~~~l~~~~-~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
| ++.+++.|++.. ++..+++.+..+||||. +|.++|++|++++|.| ++|.++..
T Consensus 196 d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~D--ev~~~~g~ 267 (449)
T 3a8u_X 196 MPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFD--EVITGFGR 267 (449)
T ss_dssp SCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEe--ccccCccc
Confidence 5 888888886421 23344544433577995 6899999999999999 99987743
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.28 E-value=5e-12 Score=112.08 Aligned_cols=179 Identities=11% Similarity=-0.002 Sum_probs=108.0
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHH-H-HHHH---HhhcCCCCccCcC---CCCcHHHHHHHHHHhcCCCCCCCcCC
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVR-Q-AEKE---LAADDSLNHEYLP---VLGLESFSSAATRMLLGGDASPPLRE 75 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~-~-a~~~---~~~~~~~~~~Y~~---~~G~~~lr~aia~~~~~~~~~~~~~~ 75 (218)
..|...+|++.|.+..+-| ..+|.|. + |..+ .++. .. .|++ ..-..+|++.+++++-. ...
T Consensus 51 ~~g~~ylD~~~~~~~~~lG--~~~p~v~~~~A~~~~~~~~~~--~~-~~~~~~~~~~~~~la~~la~~~~~------~~~ 119 (449)
T 2cjg_A 51 ITGRRYLDMFTFVASSALG--MNPPALVDDREFHAELMQAAL--NK-PSNSDVYSVAMARFVETFARVLGD------PAL 119 (449)
T ss_dssp TTCCEEEESSHHHHTCSSC--BSCHHHHTCHHHHHHHHHHHT--CC-CCTTTCCCHHHHHHHHHHHHHHCC------TTC
T ss_pred CCCcEEEEccCCccccCCC--CCCHHHHHHHHHHHHHHHHHh--cC-CCCcccCCHHHHHHHHHHHHhcCC------CCC
Confidence 3566778887775433344 2477788 7 7666 5533 22 2332 22234556666655421 223
Q ss_pred CceEEEEeccChhHHHHHHHHHHHh-c----------C-CCeEEecCCCchhHHHHHHHhCCC-------------ccee
Q psy6266 76 GRAFGVQTLSGTGALRVGAEFLHRI-L----------N-YTTFYYSKPTWENHRLVFLNAGFT-------------EARE 130 (218)
Q Consensus 76 ~~v~~~~t~G~~~al~~~~~~l~~l-~----------~-gd~V~i~~P~y~~y~~~~~~~g~~-------------~~~~ 130 (218)
++| +.|.|+++|+..+++++..+ . | ||+|++++|+|..+.......+.. .++.
T Consensus 120 ~~v--~~~~~gseA~~~aik~a~~~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (449)
T 2cjg_A 120 PHL--FFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRID 197 (449)
T ss_dssp CEE--EEESSHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEEC
T ss_pred CEE--EEeCchHHHHHHHHHHHHHHhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEE
Confidence 554 69999999999988754322 1 2 899999999998765422222210 1223
Q ss_pred EeccCCcCc--------cccHHHHHHHHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeec
Q psy6266 131 YRYWNPEKR--------AVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 131 ~~~~~~~~~--------~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+|..+.... ..+++.+++.+++..+++.+++.+..+||||. +|.++|++|++++|.| |+|.
T Consensus 198 ~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~D--Ev~~ 275 (449)
T 2cjg_A 198 APYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFD--EVQT 275 (449)
T ss_dssp CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEE--CTTT
T ss_pred EcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEe--cccc
Confidence 333110001 13445577777543244555665556799994 7999999999999999 9999
Q ss_pred cCCC
Q psy6266 194 GLTT 197 (218)
Q Consensus 194 ~l~~ 197 (218)
++.+
T Consensus 276 g~g~ 279 (449)
T 2cjg_A 276 GCGL 279 (449)
T ss_dssp TTTT
T ss_pred CCCc
Confidence 8754
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=109.00 Aligned_cols=126 Identities=12% Similarity=0.070 Sum_probs=93.4
Q ss_pred CccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH--
Q psy6266 44 NHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-- 119 (218)
Q Consensus 44 ~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-- 119 (218)
.+.|+- ..-..+||+++++++-. . +. +++.+|++|+.++++++ +.+||+|++++|.|+++...
T Consensus 105 ~~~y~r~~~~~~~~l~~~lA~l~g~-------~-~~---v~~~sG~~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~ 171 (445)
T 1qgn_A 105 SFEYGRYGNPTTVVLEEKISALEGA-------E-ST---LLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIE 171 (445)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTC-------S-EE---EEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHH
T ss_pred CccccCCCChHHHHHHHHHHHHhCC-------C-cE---EEeCCHHHHHHHHHHHH--hCCCCEEEEcCCCchhHHHHHH
Confidence 455653 23445899999987632 1 22 34455559999888866 67999999999999987764
Q ss_pred --HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc-EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCcee
Q psy6266 120 --FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS-VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRIN 191 (218)
Q Consensus 120 --~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~-~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~ 191 (218)
++..|+ +++.++. .|++.+++.|+. ++ .+++..+|+||||. +|.++|++++++++.| ++
T Consensus 172 ~~~~~~G~-~v~~v~~-------~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD--~a 238 (445)
T 1qgn_A 172 TILPKMGI-TATVIDP-------ADVGALELALNQ---KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID--GT 238 (445)
T ss_dssp HTGGGGTC-EEEEECS-------SCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE--CT
T ss_pred HHHHHcCC-EEEEeCC-------CCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE--CC
Confidence 345687 7777753 178888888864 34 55666789999997 8999999999999999 88
Q ss_pred eccC
Q psy6266 192 MCGL 195 (218)
Q Consensus 192 y~~l 195 (218)
|...
T Consensus 239 ~~~~ 242 (445)
T 1qgn_A 239 FATP 242 (445)
T ss_dssp TTCT
T ss_pred Cccc
Confidence 8643
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=7.9e-12 Score=112.87 Aligned_cols=158 Identities=9% Similarity=0.015 Sum_probs=114.5
Q ss_pred HHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH-h-------
Q psy6266 29 VVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR-I------- 100 (218)
Q Consensus 29 ~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~-l------- 100 (218)
.+.+++....+. ....|..+.|..+|.+++++++.. ..+.....+ ..+.|.|+++|...++.+... +
T Consensus 111 ~~~e~l~~~~~~--~~~~~~~~p~~~~le~~~~~~l~~-~~g~~~~~~--~~~~t~ggt~a~~~al~~a~~~~~~~~~~~ 185 (511)
T 3vp6_A 111 LAGEWLTSTANT--NMFTYEIAPVFVLMEQITLKKMRE-IVGWSSKDG--DGIFSPGGAISNMYSIMAARYKYFPEVKTK 185 (511)
T ss_dssp HHHHHHHHHHCC--CSSCTTTCHHHHHHHHHHHHHHHH-HHTCCSSSC--EEEEESSHHHHHHHHHHHHHHHHCTHHHHH
T ss_pred HHHHHHHHHhcc--CCCCcccCchHHHHHHHHHHHHHH-HhCCCCCCC--ceEECCchHHHHHHHHHHHHHHhhhhhhhc
Confidence 444556655542 456799999999999999888733 222111123 346899999998877765532 1
Q ss_pred ----cCCCeEEecCCCchhHHHHHHHhCCC--cceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH
Q psy6266 101 ----LNYTTFYYSKPTWENHRLVFLNAGFT--EAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ 171 (218)
Q Consensus 101 ----~~gd~V~i~~P~y~~y~~~~~~~g~~--~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~ 171 (218)
.|++.|+++++.|+++...++..|+- +++.++. .+.+.+|++.++++|++. ..++++++.+.++||||.
T Consensus 186 G~~~~~~~~v~~s~~~H~s~~~~~~~~g~g~~~~~~v~~--d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~ 263 (511)
T 3vp6_A 186 GMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGA 263 (511)
T ss_dssp CGGGSCCEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCC
T ss_pred CcccCCCeEEEECCCchHHHHHHHHHcCCCCCcEEEeec--CCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcc
Confidence 15789999999999999999988851 3555655 234678999999999642 112556666789999997
Q ss_pred -----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 172 -----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 172 -----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+|+++|++|++|++.| .+|.+.
T Consensus 264 vd~l~~I~~ia~~~~~~lhvD--~a~~~~ 290 (511)
T 3vp6_A 264 FDPIQEIADICEKYNLWLHVD--AAWGGG 290 (511)
T ss_dssp BCCHHHHHHHHHHHTCEEEEE--ETTGGG
T ss_pred cccHHHHHHHHHHcCCEEEEE--ccchhh
Confidence 8999999999999999 888763
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.6e-12 Score=110.63 Aligned_cols=119 Identities=15% Similarity=0.113 Sum_probs=89.9
Q ss_pred CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH----HHHHhCC
Q psy6266 50 VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL----VFLNAGF 125 (218)
Q Consensus 50 ~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~----~~~~~g~ 125 (218)
..+..+||+++++++.. . + .+++.+|++|+.++++ + +.+||+|++++|.|++... .++..|+
T Consensus 54 ~~~~~~lr~~la~~~g~-~--------~--~i~~~sGt~a~~~al~-~--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~ 119 (393)
T 1n8p_A 54 NPNRENLERAVAALENA-Q--------Y--GLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVANAHGV 119 (393)
T ss_dssp CHHHHHHHHHHHHHTTC-S--------E--EEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTSTTTCS
T ss_pred ChhHHHHHHHHHHHhCC-C--------c--EEEECChHHHHHHHHH-H--cCCCCEEEEeCCCchHHHHHHHHHHHHcCc
Confidence 45678999999988643 1 2 2355556999999887 5 6799999999999985443 3455677
Q ss_pred CcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcC----eEEEeeCCceeeccCC
Q psy6266 126 TEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKH----HVYLLRSGRINMCGLT 196 (218)
Q Consensus 126 ~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~----~i~ii~D~r~~y~~l~ 196 (218)
+++.++.. | +.+++.++ +++.+++..+||||||. +|.++|+++ ++++|.| ++|..+.
T Consensus 120 -~v~~v~~~-------d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD--~a~~~~~ 185 (393)
T 1n8p_A 120 -ETSFTNDL-------L-NDLPQLIK---ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD--NTFLSPY 185 (393)
T ss_dssp -CCEEESSH-------H-HHHHHHSC---SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEE--CTTTHHH
T ss_pred -EEEEeCCC-------h-HHHHHhcc---cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEe--CCccccc
Confidence 77777541 5 66777664 34566666899999997 899999999 9999999 8887553
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.7e-11 Score=108.89 Aligned_cols=116 Identities=9% Similarity=0.073 Sum_probs=88.2
Q ss_pred EEEeccChh-HHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccC-CcCccccHHHHHHHH-hcC-CC
Q psy6266 80 GVQTLSGTG-ALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN-PEKRAVDFTGMYEDL-VNA-PD 155 (218)
Q Consensus 80 ~~~t~G~~~-al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~~~~~l-~~~-~~ 155 (218)
++.|.|+++ ++.+++.++..+.++++|++++|.|+++...++..|+ +++.++... .+.+.+|++.+++.| +.. .+
T Consensus 152 ~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h~s~~~~~~~~G~-~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~ 230 (456)
T 2z67_A 152 AIATPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGM-NMRLVETVLDGDRVYVPVEDIENAIKKEIELG 230 (456)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTC-EEEEECCEEETTEEECCHHHHHHHHHHHHHTT
T ss_pred EEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHcCC-CceEEEEeccCCCCCcCHHHHHHHHHHHhhCC
Confidence 468999995 5554444432222688899999999999999999999 888887631 234578999999999 421 13
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++++++.++|+||||. +|.++|++++++++.| ++|..+..+
T Consensus 231 ~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD--~A~~~~~~g 276 (456)
T 2z67_A 231 NRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIIN--GAYAIQNNY 276 (456)
T ss_dssp CCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE--CTTTTTCHH
T ss_pred CeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEE--CcchHHHHH
Confidence 5566656789999998 8999999999999999 998876543
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.9e-12 Score=112.64 Aligned_cols=178 Identities=9% Similarity=0.005 Sum_probs=112.4
Q ss_pred CCC--ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCc---cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 5 SGE--IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNH---EYLPVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 5 ~~~--~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~---~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.|. ..||+.-|.....-| ..+|.|.+|..+.+++ ..+ .+.+.....+|++.+++++- ...++
T Consensus 71 dG~~~~ylD~~s~~~~~~lG--h~~p~v~~A~~~~~~~--~~~~~~~~~~~~~~~~L~e~la~~~~-------~~~~~-- 137 (457)
T 3tfu_A 71 DGQPIEVLDAMSSWWTAIHG--HGHPALDQALTTQLRV--MNHVMFGGLTHEPAARLAKLLVDITP-------AGLDT-- 137 (457)
T ss_dssp TTEEEEEEETTHHHHTCTTC--BTCHHHHHHHHHHHHH--CSCCCSSSEECHHHHHHHHHHHHHSS-------TTEEE--
T ss_pred CCCeeEEEECCCcHhhhccC--CCCHHHHHHHHHHHHh--ccCccccccCCHHHHHHHHHHHHhCC-------CCcCE--
Confidence 677 788887775444556 3578888887766644 122 12233445566666666542 12244
Q ss_pred EEEeccChhHHHHHHHHHHHh-----cCC-CeEEecCCCchhHHHHHHHhCCC-------------cceeEeccCCcCcc
Q psy6266 80 GVQTLSGTGALRVGAEFLHRI-----LNY-TTFYYSKPTWENHRLVFLNAGFT-------------EAREYRYWNPEKRA 140 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l-----~~g-d~V~i~~P~y~~y~~~~~~~g~~-------------~~~~~~~~~~~~~~ 140 (218)
++.|.||++|+.++++++... .+| ++|++.+|+|..+......++.. ....++........
T Consensus 138 v~~~~sGseA~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 217 (457)
T 3tfu_A 138 VFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDP 217 (457)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCH
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCH
Confidence 469999999999988876321 055 48999999998765444443210 12222221111112
Q ss_pred ccHHHHHHHHhcCCCCcEEEEccc-CCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 141 VDFTGMYEDLVNAPDNSVIILHAC-AHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 141 ~d~~~~~~~l~~~~~~~~iil~~~-p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
.|++.+++.|++..++..+++..+ ++||||. +|.++|++|++++|.| |+|.+|..
T Consensus 218 ~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~D--Ev~~g~gr 282 (457)
T 3tfu_A 218 AYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFD--EIATGFGR 282 (457)
T ss_dssp HHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEE--CTTTTTTT
T ss_pred HHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEE--cCccCCcc
Confidence 377888888864223345555556 8999985 7899999999999999 99998754
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-12 Score=112.77 Aligned_cols=182 Identities=12% Similarity=0.076 Sum_probs=118.9
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||++-|.+...-| ..+|.|++|.++.++. ..+.|+...+..+.+.++++++.. ... ...++| +.
T Consensus 51 d~~G~~ylD~~s~~~~~~lG--h~~p~v~~A~~~~~~~--~~~~~~~~~~~~~~~~~lae~l~~-~~~--~~~~~v--~~ 121 (472)
T 3hmu_A 51 DSEGEEILDAMAGLWCVNIG--YGRDELAEVAARQMRE--LPYYNTFFKTTHVPAIALAQKLAE-LAP--GDLNHV--FF 121 (472)
T ss_dssp ETTCCEEECTTHHHHTCTTC--BCCHHHHHHHHHHHHH--CSCCCSSSSEECHHHHHHHHHHHH-HSC--TTEEEE--EE
T ss_pred ECCCCEEEECCCchhhccCC--CCCHHHHHHHHHHHHh--ccccccccccCCHHHHHHHHHHHH-hCC--CCCCEE--EE
Confidence 35688889998885545666 3578899887776654 334466666666666667666643 211 123444 69
Q ss_pred eccChhHHHHHHHHHHHh------cCCCeEEecCCCchhHHHHHHHhCCCcce------------eEe--c-cCCcCccc
Q psy6266 83 TLSGTGALRVGAEFLHRI------LNYTTFYYSKPTWENHRLVFLNAGFTEAR------------EYR--Y-WNPEKRAV 141 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l------~~gd~V~i~~P~y~~y~~~~~~~g~~~~~------------~~~--~-~~~~~~~~ 141 (218)
|.||++|+..+++++... .+++.|++.+|+|..|......++. .+. .++ + +....+ .
T Consensus 122 ~~sGseA~~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~-~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~ 199 (472)
T 3hmu_A 122 AGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGG-MAGMHAQSGLIPDVHHINQPNWWAEGGD-M 199 (472)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC-CHHHHHTTCCCSSEEEECCCCHHHHCTT-C
T ss_pred eCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccC-ChhhccccCCCCCcEEeCCCccccCCcc-c
Confidence 999999999998876432 1478999999999998876666655 322 222 1 000000 1
Q ss_pred c--------HHHHHHHHhcCC-CCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 142 D--------FTGMYEDLVNAP-DNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 142 d--------~~~~~~~l~~~~-~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
+ ++.+++.+.+.. ++..+++..+.+|++|. +|.++|++|++++|.| |+|.+|..
T Consensus 200 ~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~D--Ev~~gfgr 271 (472)
T 3hmu_A 200 DPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIAD--EVICGFGR 271 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTTTT
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEE--ccccCCcc
Confidence 2 566777665321 23455555556666665 7899999999999999 99998743
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=108.34 Aligned_cols=125 Identities=13% Similarity=0.052 Sum_probs=92.3
Q ss_pred ccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH--
Q psy6266 45 HEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF-- 120 (218)
Q Consensus 45 ~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~-- 120 (218)
+.|.- ..-..+|+++++++... +. .+++.||++|+.++++++ +.+||+|++++|.|++....+
T Consensus 74 ~~y~r~~~p~~~~le~~lA~l~g~---------~~--~i~~ssGt~Ai~~al~~l--~~~Gd~Vi~~~~~y~~~~~~~~~ 140 (415)
T 2fq6_A 74 LFYGRRGTLTHFSLQQAMCELEGG---------AG--CVLFPCGAAAVANSILAF--IEQGDHVLMTNTAYEPSQDFCSK 140 (415)
T ss_dssp CCCTTTCCHHHHHHHHHHHHHHTC---------SE--EEEESSHHHHHHHHHHTT--CCTTCEEEEETTSCHHHHHHHHH
T ss_pred ccccCCCCchHHHHHHHHHHHhCC---------Ce--EEEeCCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHH
Confidence 44542 23356799999887632 12 247788899999888765 679999999999999877655
Q ss_pred --HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhc--CeEEEeeCCcee
Q psy6266 121 --LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDK--HHVYLLRSGRIN 191 (218)
Q Consensus 121 --~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~--~~i~ii~D~r~~ 191 (218)
+..|+ ++..++. .|++.++++|+ +++++++..+|+||||. +|+++|++ ++++++.| ++
T Consensus 141 ~l~~~G~-~v~~v~~-------~d~~~le~ai~---~~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD--~a 207 (415)
T 2fq6_A 141 ILSKLGV-TTSWFDP-------LIGADIVKHLQ---PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID--NT 207 (415)
T ss_dssp TGGGGTC-EEEEECT-------TCGGGGGGGCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE--CT
T ss_pred HHHHcCc-EEEEECC-------CCHHHHHHhhc---cCCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEE--CC
Confidence 34577 6766643 15666666664 44566666899999997 89999999 99999999 88
Q ss_pred eccC
Q psy6266 192 MCGL 195 (218)
Q Consensus 192 y~~l 195 (218)
|...
T Consensus 208 ~a~~ 211 (415)
T 2fq6_A 208 WAAG 211 (415)
T ss_dssp TTTT
T ss_pred Cccc
Confidence 7643
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.2e-12 Score=111.38 Aligned_cols=163 Identities=16% Similarity=0.082 Sum_probs=102.1
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC---CCcHHHH--HHHH-HHhcCCCCCCCcCCCceEEE
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV---LGLESFS--SAAT-RMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~---~G~~~lr--~aia-~~~~~~~~~~~~~~~~v~~~ 81 (218)
.+|+|..+ ++ ++++.|++|+.+.+.+ ...+.|..+ .|.+.++ ++++ +++.. ..+ . +.+ .+
T Consensus 46 ~~i~l~~~----~~---~~~~~v~~a~~~~~~~-~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~-~~g--~--~~~-~v 111 (447)
T 3h7f_A 46 DTLEMIAS----EN---FVPRAVLQAQGSVLTN-KYAEGLPGRRYYGGCEHVDVVENLARDRAKA-LFG--A--EFA-NV 111 (447)
T ss_dssp HSEECCTT----CC---CCCHHHHHHHTSGGGG-CCCCEETTEESSSCCHHHHHHHHHHHHHHHH-HHT--C--SEE-EC
T ss_pred CceeEecC----CC---CCCHHHHHHHHHHhcC-CccccCCcccccCccHHHHHHHHHHHHHHHH-HcC--C--Cce-EE
Confidence 35677443 22 3488899887765532 123344432 3655555 3333 33321 111 1 122 23
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH---HH--HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR---LV--FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~---~~--~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
++.+|++|+..+++++ ++|||+|++++|+|+.|. .. +...+. .++.++.. .+.+.+|++.+++.+.+. +
T Consensus 112 ~~~sGs~a~~~a~~~~--~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~-~~~~~~d~~~l~~~i~~~--~ 185 (447)
T 3h7f_A 112 QPHSGAQANAAVLHAL--MSPGERLLGLDLANGGHLTHGMRLNFSGKLY-ENGFYGVD-PATHLIDMDAVRATALEF--R 185 (447)
T ss_dssp CCSSHHHHHHHHHHHH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHSS-EEEEECCC-TTTCSCCHHHHHHHHHHH--C
T ss_pred EeCCHHHHHHHHHHHh--cCCCCEEEecCcccccccchhhhhhhcCCee-EEEEcCcC-cccCCcCHHHHHHHHHhc--C
Confidence 3777888998888776 689999999999998732 11 222334 44555542 344568999999988642 2
Q ss_pred cEEEEcccCCCCcHH---HHHHHhhcCeEEEeeCCceee
Q psy6266 157 SVIILHACAHNPTAQ---QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 157 ~~iil~~~p~NPTG~---~l~~l~~~~~i~ii~D~r~~y 192 (218)
+.+++.++|+|||+. +|.++|++|++++|.| ++|
T Consensus 186 ~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~D--ea~ 222 (447)
T 3h7f_A 186 PKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVD--MAH 222 (447)
T ss_dssp CSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEE--CTT
T ss_pred CeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEE--CCc
Confidence 234555679999986 8999999999999999 774
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.21 E-value=3.4e-11 Score=105.64 Aligned_cols=174 Identities=14% Similarity=0.029 Sum_probs=106.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++-|.....-| ..+|.|.+|..+.++. ..+.+.+.....+|++.+++++.+ .+++ +.|
T Consensus 50 ~~g~~ylD~~~~~~~~~lG--~~~p~v~~A~~~~~~~--~~~~~~~~~~~~~la~~l~~~~~~--------~~~v--~~~ 115 (429)
T 4e77_A 50 VDGKAYIDYVGSWGPMILG--HNHPAIRQAVIEAVER--GLSFGAPTEMEVKMAQLVTDLVPT--------MDMV--RMV 115 (429)
T ss_dssp TTCCEEEESSGGGTTCTTC--BTCHHHHHHHHHHHTT--CSCCSSCCHHHHHHHHHHHHHSTT--------CSEE--EEE
T ss_pred CCCCEEEECCCchhccccC--CCCHHHHHHHHHHHHh--CcccCCCCHHHHHHHHHHHhhCCC--------CCEE--EEe
Confidence 4677888888876444455 3578899888776643 222223454555666666665421 2444 689
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-HhCCCcc--eeEeccC-------CcC---ccccHHHHHHHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-NAGFTEA--REYRYWN-------PEK---RAVDFTGMYEDL 150 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-~~g~~~~--~~~~~~~-------~~~---~~~d~~~~~~~l 150 (218)
.||++|+.+++++.....+++.|++.+|+|..+...+. ..+. .. ...+... ... ...|++.+++.+
T Consensus 116 ~sGsea~~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l 194 (429)
T 4e77_A 116 NSGTEATMSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGS-GALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAF 194 (429)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEETTCCCC-------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCC-cccccCCCCcCCCCCccCCceeecCCCCHHHHHHHH
Confidence 99999999988865434467899999999987653211 1110 00 0000000 000 011788888888
Q ss_pred hcCCCCcEEEEcccCCCCcHH----------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 151 VNAPDNSVIILHACAHNPTAQ----------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 151 ~~~~~~~~iil~~~p~NPTG~----------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
++..++..+++ ..|+||+|. +|.++|++|++++|.| |+|.++
T Consensus 195 ~~~~~~~~~vi-~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~D--Ev~~g~ 246 (429)
T 4e77_A 195 EQYPQEVACII-VEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIID--EVMTGF 246 (429)
T ss_dssp HHSTTTEEEEE-ECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEE--ETTTBT
T ss_pred HhcCCCEEEEE-ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEe--ccccCc
Confidence 75433444444 457777663 7899999999999999 999988
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.21 E-value=1.8e-11 Score=106.33 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=86.3
Q ss_pred cCchHHHHHHHHHhhcCCCCccC------cCCCCcHHHHH----HHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEY------LPVLGLESFSS----AATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGA 94 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y------~~~~G~~~lr~----aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~ 94 (218)
+.++.|++|+.+.+.+ .....| ....+..++.+ .+++++ + .++++| ++|.| ++|+.+++
T Consensus 36 ~~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g------~~~~~i--~~~sG-t~a~~~~~ 104 (417)
T 3n0l_A 36 FTLPEVMEVMGSILTN-KYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF-N------CKFANV--QPNSG-SQANQGVY 104 (417)
T ss_dssp CCCHHHHHHHTBGGGG-CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-T------CSEEEC--CCSSH-HHHHHHHH
T ss_pred CCCHHHHHHHhhhhhc-cccccCCCccccccchHHHHHHHHHHHHHHHHh-C------CCCcce--EeccH-HHHHHHHH
Confidence 3488899887765532 112223 23333455555 344333 3 223334 36667 89999998
Q ss_pred HHHHHhcCCCeEEecCCCchhHHH---HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH
Q psy6266 95 EFLHRILNYTTFYYSKPTWENHRL---VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ 171 (218)
Q Consensus 95 ~~l~~l~~gd~V~i~~P~y~~y~~---~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~ 171 (218)
+++ ++|||+|++++|+|+.+.. .+...|. ....+++...+.+.+|++.+++.+.+. ++.+++.+.++|++-.
T Consensus 105 ~~~--~~~gd~vl~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~G~~~ 179 (417)
T 3n0l_A 105 AAL--INPGDKILGMDLSHGGHLTHGAKVSSSGK-MYESCFYGVELDGRIDYEKVREIAKKE--KPKLIVCGASAYARVI 179 (417)
T ss_dssp HHH--SCTTCEEEEECC----------------C-CSEEEEECCCTTSSCCHHHHHHHHHHH--CCSEEEECCSSCCSCC
T ss_pred HHh--cCCCCEEEecccccccccchhhhhhhhcc-eeeeEeccCCCCCCcCHHHHHHHHHhc--CCeEEEECCcccCccC
Confidence 877 7899999999999988654 3344444 333333321244568999999998732 2233344556664432
Q ss_pred ---HHHHHhhcCeEEEeeCCcee
Q psy6266 172 ---QVAHMVDKHHVYLLRSGRIN 191 (218)
Q Consensus 172 ---~l~~l~~~~~i~ii~D~r~~ 191 (218)
+|.++|++|++++|.| ++
T Consensus 180 ~l~~i~~l~~~~~~~li~D--ea 200 (417)
T 3n0l_A 180 DFAKFREIADEIGAYLFAD--IA 200 (417)
T ss_dssp CHHHHHHHHHHHTCEEEEE--CT
T ss_pred CHHHHHHHHHHcCCEEEEE--Cc
Confidence 8999999999999999 76
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=4.7e-11 Score=106.89 Aligned_cols=161 Identities=7% Similarity=-0.000 Sum_probs=117.6
Q ss_pred chHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC------CceEEEEeccChhHHHHHHHHHHH-
Q psy6266 27 LPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE------GRAFGVQTLSGTGALRVGAEFLHR- 99 (218)
Q Consensus 27 ~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~------~~v~~~~t~G~~~al~~~~~~l~~- 99 (218)
+..+.++...+.+. ....|..+.+..+|.+++++++.. ..+..... ..-..++|.||+++..+++.+.+.
T Consensus 92 ~~~~~~~~~~~~n~--~~~~~~~~p~~~~lE~~v~~~l~~-l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~ 168 (481)
T 4e1o_A 92 PSLLGDMLADAINC--LGFTWASSPACTELEMNVMDWLAK-MLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKN 168 (481)
T ss_dssp HHHHHHHHHHHHCC--CCSSTTTCHHHHHHHHHHHHHHHH-HHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCc--ccCCcCCCcHHHHHHHHHHHHHHH-HhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHH
Confidence 44555666666643 456799999999999999888632 21111100 001346899999998877765422
Q ss_pred ----------------hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC---CCcEEE
Q psy6266 100 ----------------ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP---DNSVII 160 (218)
Q Consensus 100 ----------------l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~~~ii 160 (218)
+.|+++|+++++.+.++...++..|+ +++.+|. .+.+.+|++.++++|++.. ..++++
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~~~~~~~g~-~~~~v~~--~~~~~~d~~~Le~~i~~~~~~g~~~~~v 245 (481)
T 4e1o_A 169 KILEMKTSEPDADESSLNARLVAYASDQAHSSVEKAGLISLV-KMKFLPV--DDNFSLRGEALQKAIEEDKQRGLVPVFV 245 (481)
T ss_dssp HHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHHHHHHHHTC-EEEEECC--CTTSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHhhhcCcccccccccCCeEEEEcCcchHHHHHHHHhCCC-ceEEEEc--CCCCcCCHHHHHHHHHHHHhCCCCcEEE
Confidence 12678999999999999999998998 8999987 3456889999999997531 124556
Q ss_pred EcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 161 LHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 161 l~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+.+.++|+||. +|+++|++|++|++.| .+|.+.
T Consensus 246 v~~~~~t~~G~id~l~~I~~la~~~~~~lhvD--aA~g~~ 283 (481)
T 4e1o_A 246 CATLGTTGVCAFDCLSELGPICAREGLWLHID--AAYAGT 283 (481)
T ss_dssp EEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEE--CTTGGG
T ss_pred EEecCCCCCcCcCCHHHHHHHHHHcCCeEEee--hhhHHH
Confidence 66788999997 8999999999999999 777753
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=106.46 Aligned_cols=172 Identities=12% Similarity=-0.007 Sum_probs=106.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|....+-| ..++.|.+|..+.++. .....| +..-..+|++.+++++- ..++| +.|
T Consensus 53 ~~g~~~lD~~~~~~~~~lG--~~~~~v~~a~~~~~~~-~~~~~~-~~~~~~~l~~~la~~~~--------~~~~v--~~~ 118 (434)
T 2epj_A 53 VDGARIVDLVLAYGPLILG--HKHPRVLEAVEEALAR-GWLYGA-PGEAEVLLAEKILGYVK--------RGGMI--RFV 118 (434)
T ss_dssp TTCCEEEESSGGGTTCTTC--BTCHHHHHHHHHHHHT-CSCCSS-CCHHHHHHHHHHHHHHC--------TTCEE--EEE
T ss_pred CCCCEEEEcccchhcccCC--CCCHHHHHHHHHHHHh-CCCCCC-CCHHHHHHHHHHHHhCC--------CCCEE--EEe
Confidence 3577888998885322334 2678899888777653 212223 22223445555554431 13444 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-H-------------hCCC-----cceeEeccCCcCccccHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-N-------------AGFT-----EAREYRYWNPEKRAVDFT 144 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-~-------------~g~~-----~~~~~~~~~~~~~~~d~~ 144 (218)
.|+++|+.+++++.+.+.++++|++++|+|..+..... . .|.. +++.+++ .|++
T Consensus 119 ~sgseA~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~ 191 (434)
T 2epj_A 119 NSGTEATMTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPY-------NDVE 191 (434)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEET-------TCHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCC-------CCHH
Confidence 99999999988863223467899999999987543111 1 1210 1222321 2788
Q ss_pred HHHHHHhcCCCCcEEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 145 GMYEDLVNAPDNSVIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 145 ~~~~~l~~~~~~~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+++.+++..++..+++.+..+||||. +|.++|++|++++|.| |+|.++..+
T Consensus 192 ~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~D--Ev~~g~~~g 252 (434)
T 2epj_A 192 ALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILD--EVVTGFRLG 252 (434)
T ss_dssp HHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEE--ETTTTTTSS
T ss_pred HHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEE--cchhceeCC
Confidence 888888642123444554444567884 7899999999999999 999988433
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.18 E-value=8.3e-12 Score=110.84 Aligned_cols=126 Identities=7% Similarity=-0.040 Sum_probs=92.2
Q ss_pred cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCC
Q psy6266 46 EYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGF 125 (218)
Q Consensus 46 ~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~ 125 (218)
-|.+...+.++|+.+++ ++ . + +. ++.|.|+++|+.++++++ +.+||+|++++|+|+++...+...|+
T Consensus 52 ~~~~~~~~~~~~~~la~--~g-~-----~-~~--v~~~~G~t~a~~~~~~a~--~~~gd~Vlv~~~~h~s~~~~~~~~G~ 118 (446)
T 2x3l_A 52 LHHPEEVILKSMKQVEK--HS-D-----Y-DG--YFLVNGTTSGILSVIQSF--SQKKGDILMARNVHKSVLHALDISQQ 118 (446)
T ss_dssp TTSCSSHHHHHHHHHCS--CT-T-----E-EE--EEESSHHHHHHHHHHHTT--TTSSSCEEECTTCCHHHHHHHHHHTC
T ss_pred ccCcchHHHHHHHHHHh--cC-C-----C-ce--EEEeCCHHHHHHHHHHHh--cCCCCEEEEecCccHHHHHHHHHcCC
Confidence 45666778899999887 55 2 2 33 368999999999998876 67999999999999999999999999
Q ss_pred CcceeEeccCCcC----ccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 126 TEAREYRYWNPEK----RAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 126 ~~~~~~~~~~~~~----~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+++.++....+. ..+|++.+ +. +++.+++..+ +||||. +|.++|++|++++|.| ++|..
T Consensus 119 -~~~~v~~~~~~~~~~~~~~d~~~l---~~---~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livD--ea~~~ 186 (446)
T 2x3l_A 119 -EGHFIETHQSPLTNHYNKVNLSRL---NN---DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLID--EAHGA 186 (446)
T ss_dssp -CEEECEEEECTTTSSEEEEEC-------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEE--CTTCT
T ss_pred -eEEEEeCeeccccCcCCCCCHHHH---cC---CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEc--chhhh
Confidence 898887621222 34677766 22 2333333334 677997 8999999999999999 88775
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.7e-11 Score=105.29 Aligned_cols=102 Identities=16% Similarity=0.047 Sum_probs=66.6
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchh---HHHHHHHhCCCcce--eEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWEN---HRLVFLNAGFTEAR--EYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~---y~~~~~~~g~~~~~--~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
.+.||++|+.++++++ +.|||+|++++|+|+. +.......|. ... .++. ..+.+.+|++.+++.+.+. +.
T Consensus 99 ~~~~Gs~a~~~al~~~--~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~-~~~~~~~d~~~l~~~i~~~-~~ 173 (425)
T 3ecd_A 99 QPHSGAQANGAVMLAL--AKPGDTVLGMSLDAGGHLTHGAKPALSGK-WFNALQYGV-SRDTMLIDYDQVEALAQQH-KP 173 (425)
T ss_dssp CCSSHHHHHHHHHHHH--CCTTCEEEEECC-------------------CEEEEECC-CTTTSSCCHHHHHHHHHHH-CC
T ss_pred ecCchHHHHHHHHHHc--cCCCCEEEEcccccccceecchhhhhccc-ceeeeecCC-CcccCccCHHHHHHHHhhc-CC
Confidence 5788889999888876 6899999999999988 4433334444 333 4443 2344678999999988642 22
Q ss_pred cEEEEcccCCCCcHH---HHHHHhhcCeEEEeeCCcee
Q psy6266 157 SVIILHACAHNPTAQ---QVAHMVDKHHVYLLRSGRIN 191 (218)
Q Consensus 157 ~~iil~~~p~NPTG~---~l~~l~~~~~i~ii~D~r~~ 191 (218)
..+++ ++|+||+.. +|.++|++|++++|.| ++
T Consensus 174 ~~v~~-~~~~~~~~~~l~~i~~l~~~~~~~li~D--e~ 208 (425)
T 3ecd_A 174 SLIIA-GFSAYPRKLDFARFRAIADSVGAKLMVD--MA 208 (425)
T ss_dssp SEEEE-ECSCCCSCCCHHHHHHHHHHHTCEEEEE--CG
T ss_pred cEEEE-ccccCCCcCCHHHHHHHHHHcCCEEEEE--Cc
Confidence 34343 568998765 8999999999999999 87
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.3e-12 Score=111.33 Aligned_cols=163 Identities=8% Similarity=-0.088 Sum_probs=103.3
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC--CCCccCcC---CCC----cHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD--SLNHEYLP---VLG----LESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~Y~~---~~G----~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
.+++++.| .+++++.|++|+.+..++. .+...|.. ..| ..++|+.+++++ + . .++++|
T Consensus 3 ~~~~~~~g-------~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~-g-~----~~~~~v 69 (360)
T 1w23_A 3 QVFNFNAG-------PSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL-Q-I----PNDYQI 69 (360)
T ss_dssp CCEECCSS-------SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH-T-C----CTTEEE
T ss_pred ceEeecCC-------CcCCCHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHh-C-C----CCCceE
Confidence 35666666 2367889999887766421 01122332 233 456777777665 3 1 123444
Q ss_pred EEEEeccC-hhHHHHHHHHHHHhcC---CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHH-HHhcC
Q psy6266 79 FGVQTLSG-TGALRVGAEFLHRILN---YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYE-DLVNA 153 (218)
Q Consensus 79 ~~~~t~G~-~~al~~~~~~l~~l~~---gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~-~l~~~ 153 (218)
++|.|+ ++|+.+++..+ +.+ ||+|+++.++|+.+ ..++..| +++.++.. ++...+|++.+++ .+
T Consensus 70 --~~~~g~gt~al~~~~~~l--~~~~~~g~~vi~~~~~~~~~-~~~~~~g--~~~~v~~~-~~~~~~d~~~l~~~~i--- 138 (360)
T 1w23_A 70 --LFLQGGASLQFTMLPMNL--LTKGTIGNYVLTGSWSEKAL-KEAKLLG--ETHIAAST-KANSYQSIPDFSEFQL--- 138 (360)
T ss_dssp --EEESSHHHHHHHHHHHHH--CCTTCEEEEEECSHHHHHHH-HHHHTTS--EEEEEEEC-GGGTSCSCCCGGGCCC---
T ss_pred --EEECCcchHHHHHHHHHh--cCCCCcccEEEecchhHHHH-HHHHHhC--CeEEeecc-cccCcCCccchHhhcc---
Confidence 588888 99999988766 444 67788777776653 3345555 67788763 2122357666655 45
Q ss_pred CCCcEEEEcccCCCCcHHHHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 154 PDNSVIILHACAHNPTAQQVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
++++.+++.++||||||..+.+++++|++++|.| ++|....
T Consensus 139 ~~~~k~v~~~~~~nptG~~~~~i~~~~~~~li~D--~a~~~~~ 179 (360)
T 1w23_A 139 NENDAYLHITSNNTIYGTQYQNFPEINHAPLIAD--MSSDILS 179 (360)
T ss_dssp CTTEEEEEEESEETTTTEECSSCCCCCSSCEEEE--CTTTTTS
T ss_pred CCCCCEEEEeCCCCCcceecccccccCCceEEEe--chhhcCC
Confidence 2455666667899999983225667899999999 8887543
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.1e-10 Score=102.36 Aligned_cols=115 Identities=13% Similarity=0.103 Sum_probs=84.8
Q ss_pred CcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH-----HHhCCC
Q psy6266 52 GLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF-----LNAGFT 126 (218)
Q Consensus 52 G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~-----~~~g~~ 126 (218)
...+|++.++++... +. .+.+.+|++|+.++ ..+ +.+||+|++++|+|+.....+ +..|+
T Consensus 68 ~~~~l~~~la~l~g~---------~~--~~~~~sG~~Ai~~~-~~l--~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~- 132 (400)
T 3nmy_A 68 TRFAYERCVAALEGG---------TR--AFAFASGMAATSTV-MEL--LDAGSHVVAMDDLYGGTFRLFERVRRRTAGL- 132 (400)
T ss_dssp HHHHHHHHHHHHHTC---------SE--EEEESSHHHHHHHH-HTT--SCTTCEEEEESSCCHHHHHHHHHTHHHHHCC-
T ss_pred HHHHHHHHHHHHhCC---------CC--EEEecCHHHHHHHH-HHH--cCCCCEEEEeCCCchHHHHHHHHhhHhhcCe-
Confidence 346788888776533 12 24666669998874 333 679999999999999544443 33588
Q ss_pred cceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 127 EAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 127 ~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+++.++.. |++.+++.+. +++.+++..+|+||||. +|.++|++|++++|.| ++|.
T Consensus 133 ~~~~v~~~-------d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livD--e~~~ 192 (400)
T 3nmy_A 133 DFSFVDLT-------DPAAFKAAIR---ADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVD--NTFA 192 (400)
T ss_dssp EEEEECTT-------SHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE--CTTT
T ss_pred EEEEECCC-------CHHHHHHHhc---cCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEE--CCCc
Confidence 77777541 6788888775 34566666789999997 8999999999999999 8875
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-11 Score=104.28 Aligned_cols=150 Identities=13% Similarity=0.031 Sum_probs=85.6
Q ss_pred CchHHHHHHHHHhhcCCCCc------cCcCCCCcHHHHHHHHHHh---cCCCCCCCcCCCceEEEEeccChhHHHHHHHH
Q psy6266 26 VLPVVRQAEKELAADDSLNH------EYLPVLGLESFSSAATRML---LGGDASPPLREGRAFGVQTLSGTGALRVGAEF 96 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~------~Y~~~~G~~~lr~aia~~~---~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~ 96 (218)
.++.|++|..+.+.+ .... .|......+.+.+...+++ ++ .++++| +.|.| ++|+.+++++
T Consensus 42 ~~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~------~~~~~v--~~~sG-s~a~~~a~~~ 111 (420)
T 3gbx_A 42 TSPRVMQAQGSQLTN-KYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFG------ADYANV--QPHSG-SQANFAVYTA 111 (420)
T ss_dssp CCHHHHHHHTSGGGG-CCC--------------CHHHHHHHHHHHHHHHT------CSEEEC--CCSSH-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhc-ccccCCCCccccCchHHHHHHHHHHHHHHHHHhC------CCCcee--EecCc-HHHHHHHHHH
Confidence 588899887766532 1111 2333333444444332222 33 223333 24555 7898888877
Q ss_pred HHHhcCCCeEEecCCCchhHH---HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--
Q psy6266 97 LHRILNYTTFYYSKPTWENHR---LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-- 171 (218)
Q Consensus 97 l~~l~~gd~V~i~~P~y~~y~---~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-- 171 (218)
+ +.|||+|++++|+|+.+. ..+...|. .+..+++...+.+.+|++.+++.+.+. ++.+++.+.|+||+-.
T Consensus 112 ~--~~~gd~v~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~~~~~~l 186 (420)
T 3gbx_A 112 L--LQPGDTVLGMNLAQGGHLTHGSPVNFSGK-LYNIVPYGIDESGKIDYDEMAKLAKEH--KPKMIIGGFSAYSGVVDW 186 (420)
T ss_dssp H--CCTTCEEEEEEEC------------CHHH-HSEEEEEEECTTCSCCHHHHHHHHHHH--CCSEEEECCTTCCSCCCH
T ss_pred h--cCCCCEEEecchhhcceeccchhhhhccc-ceeEEeccCCccCCcCHHHHHHHHHhc--CCeEEEEecCccCCccCH
Confidence 6 689999999999998843 22233343 333333311244568999999998752 2233444568898643
Q ss_pred -HHHHHhhcCeEEEeeCCceee
Q psy6266 172 -QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 172 -~l~~l~~~~~i~ii~D~r~~y 192 (218)
+|.++|++|++++|.| ++|
T Consensus 187 ~~l~~l~~~~~~~li~D--e~~ 206 (420)
T 3gbx_A 187 AKMREIADSIGAYLFVD--MAH 206 (420)
T ss_dssp HHHHHHHHHTTCEEEEE--CTT
T ss_pred HHHHHHHHHcCCEEEEE--CCc
Confidence 8999999999999999 775
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.10 E-value=8.3e-11 Score=103.00 Aligned_cols=170 Identities=14% Similarity=0.014 Sum_probs=104.5
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||++.|....+-| ..++.|.+|..+.++. .. .|. +..++++++++++.. ... ..++| +.|
T Consensus 49 ~~g~~~iD~~~~~~~~~lG--~~~p~v~~a~~~~~~~--~~-~~~---~~~~~~~~l~~~l~~-~~~---~~~~v--~~~ 114 (424)
T 2e7u_A 49 ADGNRYLDYVMSWGPLILG--HAHPKVLARVRETLER--GL-TFG---APSPLEVALAKKVKR-AYP---FVDLV--RFV 114 (424)
T ss_dssp TTCCEEEESSGGGTTCTTC--BTCHHHHHHHHHHHHT--CS-CCS---SCCHHHHHHHHHHHH-HCT---TCCEE--EEE
T ss_pred CCCCEEEEccccccccccC--CCCHHHHHHHHHHHHh--CC-CCC---CCCHHHHHHHHHHHH-hCC---CCCEE--EEe
Confidence 4577788988774322334 2688899888776653 22 232 334455555555533 211 23554 589
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH-Hh-------------CC-----CcceeEeccCCcCccccHH
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL-NA-------------GF-----TEAREYRYWNPEKRAVDFT 144 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~-~~-------------g~-----~~~~~~~~~~~~~~~~d~~ 144 (218)
.|+++|+.+++++.+.+.+++.|++++|+|..+...+. .. |. .+++.+++ .|++
T Consensus 115 ~~g~ea~~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-------~d~~ 187 (424)
T 2e7u_A 115 NSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-------NDPE 187 (424)
T ss_dssp SSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT-------TCHH
T ss_pred CCHHHHHHHHHHHHHHhhCCCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC-------CCHH
Confidence 99999999888752223467999999999987653221 11 11 01222221 3788
Q ss_pred HHHHHHhcCCCCcEEEEcccCCCC-cHH---------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 145 GMYEDLVNAPDNSVIILHACAHNP-TAQ---------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 145 ~~~~~l~~~~~~~~iil~~~p~NP-TG~---------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+++.+++..++..+++. +|+|| ||. +|.++ ++|++++|.| |+|.++..+
T Consensus 188 ~le~~l~~~~~~~~~vi~-ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~D--Ev~~g~~~g 247 (424)
T 2e7u_A 188 GLREVLKRRGEEIAAIIF-EPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIAD--EVMTGFRLA 247 (424)
T ss_dssp HHHHHHHHHGGGEEEEEE-CSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEE--CTTTTTTSS
T ss_pred HHHHHHHhCCCCEEEEEE-eCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEe--cCccccccc
Confidence 888888632123344443 46655 784 68899 9999999999 999998433
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-10 Score=101.40 Aligned_cols=148 Identities=13% Similarity=0.046 Sum_probs=94.4
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC-----CCCc----HHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP-----VLGL----ESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~-----~~G~----~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
+..++.|.| +..+|+.|+++..+.. ..+.|+| +.|. .++|+.+++++ + .+++++
T Consensus 66 ~~~~~~g~~-----~~~~p~~v~~~~~~~~----~~~~~~~~~~~~~~g~~~~~~~~~~~la~~~-g------~~~~~i- 128 (438)
T 1wyu_A 66 KAFLGGGVR-----SHHVPPVVQALAARGE----FLTAYTPYQPEVSQGVLQATFEYQTMIAELA-G------LEIANA- 128 (438)
T ss_dssp TCCCCSSCC-----CCCCCHHHHHHHTSHH----HHHCCSCCSGGGCHHHHHHHHHHHHHHHHHH-T------SSEECS-
T ss_pred ccccCCCcc-----CCcCcHHHHHHHhcch----hhhcCCCCcchhhhhHHHHHHHHHHHHHHHh-C------CCccce-
Confidence 456777753 2356777765542110 1123555 4564 45666666654 3 223343
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH----HhCCCcceeEeccCCcCccccHHHHHHHHhcCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL----NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~----~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 155 (218)
++|.|++.+...+..++ .+.+||+|++++|.|+.|...++ ..|+ +++.++. . .+.+|++. +. +
T Consensus 129 -~~~~g~taa~ea~~~a~-~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~-~v~~v~~--~-~~~~d~~~----i~---~ 195 (438)
T 1wyu_A 129 -SMYDGATALAEGVLLAL-RETGRMGVLVSQGVHPEYRAVLRAYLEAVGA-KLLTLPL--E-GGRTPLPE----VG---E 195 (438)
T ss_dssp -CBSSHHHHHHHHHHHHH-HHHTCCEEEEETTSCHHHHHHHHHHHHHTTC-EEEEECC--B-TTBCCCCC----CC---T
T ss_pred -EEeCcHHHHHHHHHHHH-hcCCCCEEEEcCccCHhHHHHHHHHHHHCCC-EEEEEcC--c-CCccCHHH----hC---C
Confidence 47888884444443333 25689999999999999986664 4799 8988875 2 23456554 42 4
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
++.+++.++| ||||. +|.++|++++++++.|
T Consensus 196 ~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd 231 (438)
T 1wyu_A 196 EVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAV 231 (438)
T ss_dssp TEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEE
T ss_pred CeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEE
Confidence 4555555668 99997 8999999999999955
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.9e-10 Score=101.21 Aligned_cols=146 Identities=9% Similarity=0.030 Sum_probs=104.1
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh------cCC-----C-eEEecCCC
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI------LNY-----T-TFYYSKPT 112 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l------~~g-----d-~V~i~~P~ 112 (218)
..|..+.+..++.+++.+++.. ..+.....+. ++.|.|+++|+.+++.++... .+| + +|+++++.
T Consensus 122 ~~~~~~~~~~~le~~~~~~la~-~~g~~~~~~~--~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~ 198 (504)
T 2okj_A 122 FTYEIAPVFVLMEQITLKKMRE-IVGWSSKDGD--GIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQS 198 (504)
T ss_dssp SCTTTCHHHHHHHHHHHHHHHH-HHTCCSSSCE--EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS
T ss_pred CchhhChHHHHHHHHHHHHHHH-HhCCCCCCCC--EEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcc
Confidence 4577777777777777555522 1111111333 469999999999888765320 146 7 89999999
Q ss_pred chhHHHHHHHhCCC--cceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH-----HHHHHhhcCeE
Q psy6266 113 WENHRLVFLNAGFT--EAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ-----QVAHMVDKHHV 182 (218)
Q Consensus 113 y~~y~~~~~~~g~~--~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i 182 (218)
++++...++..|.- +++.+|. .+.+.+|++.+++.|.+. ..++++++.+.++||||. +|.++|++|++
T Consensus 199 h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~ 276 (504)
T 2okj_A 199 HYSIKKAGAALGFGTDNVILIKC--NERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNL 276 (504)
T ss_dssp CTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCCcccEEEEec--CCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCC
Confidence 99999888887641 3666765 235678999999988642 113556666789999996 89999999999
Q ss_pred EEeeCCceeeccCCC
Q psy6266 183 YLLRSGRINMCGLTT 197 (218)
Q Consensus 183 ~ii~D~r~~y~~l~~ 197 (218)
|++.| ++|.+...
T Consensus 277 ~lhvD--~a~~~~~~ 289 (504)
T 2okj_A 277 WLHVD--AAWGGGLL 289 (504)
T ss_dssp EEEEE--ETTGGGGG
T ss_pred EEEEe--hhhhhHHH
Confidence 99999 99887543
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-11 Score=102.51 Aligned_cols=165 Identities=12% Similarity=-0.016 Sum_probs=98.6
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCC-------CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCC-ceE
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSL-------NHEYLPVLGLESFSSAATRMLLGGDASPPLREG-RAF 79 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~-------~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~-~v~ 79 (218)
.+++++.| ..++++.|++|+.+...+... ..+|. .+..++++++.+++.. ..+ ..++ ++
T Consensus 4 ~~~l~~~~-------~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~-~~g--~~~~~~~- 70 (362)
T 2c0r_A 4 RAYNFNAG-------PAALPLEVLERAQAEFVDYQHTGMSIMEMSHRG--AVYEAVHNEAQARLLA-LLG--NPTGYKV- 70 (362)
T ss_dssp CCEECCSS-------SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTS--HHHHHHHHHHHHHHHH-HTT--CCSSEEE-
T ss_pred ceeeccCC-------CCCCCHHHHHHHHHHHhhhhhcCccccccCCCc--HHHHHHHHHHHHHHHH-HhC--CCCCcEE-
Confidence 35566666 346789999988776632100 11121 2334455555554422 111 2232 43
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCC-chhH-HHHHHHhCCCcceeEeccCCcCcc--ccHHHHHHHHhcCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPT-WENH-RLVFLNAGFTEAREYRYWNPEKRA--VDFTGMYEDLVNAPD 155 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~-y~~y-~~~~~~~g~~~~~~~~~~~~~~~~--~d~~~~~~~l~~~~~ 155 (218)
+++|.|+++++.++++++ ++|||+|++++|. |+.+ ...++..| +++.++...++.++ +|.+.+. + ++
T Consensus 71 i~~t~g~t~a~~~~~~~l--~~~gd~vl~~~~~~~~~~~~~~~~~~g--~~~~v~~~~~~~~~~~~~~~~~~--i---~~ 141 (362)
T 2c0r_A 71 LFIQGGASTQFAMIPMNF--LKEGQTANYVMTGSWASKALKEAKLIG--DTHVAASSEASNYMTLPKLQEIQ--L---QD 141 (362)
T ss_dssp EEESSHHHHHHHHHHHHH--CCTTCEEEEEECSHHHHHHHHHHHHHS--CEEEEEECGGGTTCSCCCGGGCC--C---CT
T ss_pred EEECCCchHHHHHHHHhc--CCCCCeEEEEecCcHhHHHHHHHHHhC--CeEEEecccccccccCCCHHHcc--c---CC
Confidence 357899999999998877 6899999988765 5543 35566666 57777763111122 2443332 3 34
Q ss_pred CcEEEEcccCCCCcHHHHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 156 NSVIILHACAHNPTAQQVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
++++++.++|+||||..+.++.+-++++++.| ++|....
T Consensus 142 ~t~~v~~~~~~n~tG~~~~~l~~i~~~~vivD--~a~~~~~ 180 (362)
T 2c0r_A 142 NAAYLHLTSNETIEGAQFKAFPDTGSVPLIGD--MSSDILS 180 (362)
T ss_dssp TEEEEEEESEETTTTEECSSCCCCTTSCEEEE--CTTTTTS
T ss_pred CcCEEEEeCCcCccceecccccccCCCEEEEE--ChhhccC
Confidence 56666667889999983222222289999999 8887543
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-10 Score=101.22 Aligned_cols=164 Identities=15% Similarity=0.101 Sum_probs=111.6
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEeccChhHHHHHHHHHHH--h
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQTLSGTGALRVGAEFLHR--I 100 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t~G~~~al~~~~~~l~~--l 100 (218)
.+.++.+.++....... ...+.|..+.+..++.+++.+++.. ..+ .++ +. ++.|.|+++|+.+++.+.+. +
T Consensus 110 ~~~~~~v~~~~~~~~~n-~~~~~~~~~~~~~~le~~~~~~la~-~~g--~~~~~~--~~~t~ggt~a~~~al~~ar~~~~ 183 (497)
T 2qma_A 110 PPLMPAVAAEAMIAALN-QSMDSWDQASSATYVEQKVVNWLCD-KYD--LSEKAD--GIFTSGGTQSNQMGLMLARDWIA 183 (497)
T ss_dssp CCBHHHHHHHHHHHHHC-CCTTCGGGCHHHHHHHHHHHHHHHH-HTT--CCTTCE--EEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhc-ccccchhhChHHHHHHHHHHHHHHH-HhC--CCCCCC--eEEcCCchHHHHHHHHHHHHHHH
Confidence 45677777665433322 2345576666777777775555522 111 222 33 46899999999888776321 1
Q ss_pred ---------cC------CC-eEEecCCCchhHHHHHHHhCC--CcceeEeccCCcCccccHHHHHHHHhcC---CCCcEE
Q psy6266 101 ---------LN------YT-TFYYSKPTWENHRLVFLNAGF--TEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVI 159 (218)
Q Consensus 101 ---------~~------gd-~V~i~~P~y~~y~~~~~~~g~--~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~i 159 (218)
.+ || .|+++++.++++...++..|. .+++.+|. .+.+.+|++.+++.|.+. ..+.++
T Consensus 184 ~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~~~~~~~ 261 (497)
T 2qma_A 184 DKLSGHSIQKLGLPDYADKLRIVCSKKSHFTVQKSASWMGLGEKAVMTVDA--NADGTMDITKLDEVIAQAKAEGLIPFA 261 (497)
T ss_dssp HHHHCCCHHHHCSCGGGGGEEEEEETTSCTHHHHHHHHTTSCGGGEEEECB--CTTSSBCGGGHHHHHHHHHHTTCEEEE
T ss_pred HhhcccchhhcccccccCCeEEEECCCchHHHHHHHHHcCCCcccEEEEec--CCCCcCCHHHHHHHHHHHHHCCCcceE
Confidence 12 46 899999999999888888764 13667776 234678999999988642 112335
Q ss_pred EEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCC
Q psy6266 160 ILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 160 il~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~ 197 (218)
++.+.++||||. +|.++|++|++|++.| ++|.+...
T Consensus 262 vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD--~a~~~~~~ 302 (497)
T 2qma_A 262 IVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVD--GAYGGALI 302 (497)
T ss_dssp EEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEE--ETTGGGGG
T ss_pred EEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEe--hhhhHHHH
Confidence 555779999997 8999999999999999 99987543
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-10 Score=103.41 Aligned_cols=184 Identities=11% Similarity=0.000 Sum_probs=115.4
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC--CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD--SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
...|...||+..|.+...-| ..+|.|.+|..+.+... .....|.. ....+|++++++++.. ... ...++|
T Consensus 59 d~dG~~ylD~~~g~~~~~lG--h~~p~v~~A~~~~~~~~~~~~~~~~~~-~~~~~l~~~la~~l~~-~~~--~~~~~v-- 130 (472)
T 1ohv_A 59 DVDGNRMLDLYSQISSIPIG--YSHPALVKLVQQPQNVSTFINRPALGI-LPPENFVEKLRESLLS-VAP--KGMSQL-- 130 (472)
T ss_dssp BTTSCEEEESSHHHHTCSSC--BTCHHHHHHHHCGGGHHHHHCCCCTTT-SCBTTHHHHHHHTGGG-GCC--TTCCEE--
T ss_pred eCCCCEEEECCCCHhhcccC--CCCHHHHHHHHHHHhhccccccccccc-ccHHHHHHHHHHHHHH-hCC--CCcCEE--
Confidence 35688899998887644456 35788888876644210 00112322 3468899999987643 221 123554
Q ss_pred EEeccChhHHHHHHHHHHHh-----c------------------CC---CeEEecCCCchhHHHHHHHh-CCCcce----
Q psy6266 81 VQTLSGTGALRVGAEFLHRI-----L------------------NY---TTFYYSKPTWENHRLVFLNA-GFTEAR---- 129 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l-----~------------------~g---d~V~i~~P~y~~y~~~~~~~-g~~~~~---- 129 (218)
+.|.||++|...+++++... . || ++|++.+|+|..+......+ |. ...
T Consensus 131 ~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~-~~~~~~~ 209 (472)
T 1ohv_A 131 ITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHS-KAIHKID 209 (472)
T ss_dssp EEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCS-CHHHHTT
T ss_pred EEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCC-ccccccC
Confidence 68999999999988865321 1 46 89999999999877544333 32 211
Q ss_pred ---------eEeccC-C--cC--c-----cccHHHHHHHHhcCC---CCcEEEEcccCCCCcHH---------HHHHHhh
Q psy6266 130 ---------EYRYWN-P--EK--R-----AVDFTGMYEDLVNAP---DNSVIILHACAHNPTAQ---------QVAHMVD 178 (218)
Q Consensus 130 ---------~~~~~~-~--~~--~-----~~d~~~~~~~l~~~~---~~~~iil~~~p~NPTG~---------~l~~l~~ 178 (218)
.+|.+. . .. . ..|++.+++.|++.. .++.+++....+|+||. +|.++|+
T Consensus 210 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~ 289 (472)
T 1ohv_A 210 IPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISR 289 (472)
T ss_dssp SCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHH
Confidence 222110 0 00 0 125677777775411 14455555556788995 7899999
Q ss_pred cCeEEEeeCCceeeccCCC
Q psy6266 179 KHHVYLLRSGRINMCGLTT 197 (218)
Q Consensus 179 ~~~i~ii~D~r~~y~~l~~ 197 (218)
+|++++|.| |+|.++..
T Consensus 290 ~~g~lli~D--Ev~~g~g~ 306 (472)
T 1ohv_A 290 KHGCAFLVD--EVQTGGGS 306 (472)
T ss_dssp HTTCEEEEE--CTTTTTTT
T ss_pred HhCCEEEEe--CcccCCCC
Confidence 999999999 99987644
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-10 Score=99.93 Aligned_cols=157 Identities=12% Similarity=0.073 Sum_probs=112.4
Q ss_pred HHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcC-----CCceEEEEeccChhHHHHHHHHHHH----
Q psy6266 29 VVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLR-----EGRAFGVQTLSGTGALRVGAEFLHR---- 99 (218)
Q Consensus 29 ~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~-----~~~v~~~~t~G~~~al~~~~~~l~~---- 99 (218)
.+.+.+....+. ....|..+.+..+|.+++.+++.. ..+.... ...-..+.|.||+++..+++.+.+.
T Consensus 89 ~~~~~l~~~~n~--~~~~~~~~p~~~~lE~~v~~~l~~-~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~ 165 (475)
T 3k40_A 89 IVADMLSGAIAC--IGFTWIASPACTELEVVMMDWLGK-MLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLK 165 (475)
T ss_dssp HHHHHHHHHHCC--CSSSCCCCHHHHHHHHHHHHHHHH-HTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc--cccCccCCcHHHHHHHHHHHHHHH-HhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHH
Confidence 444555555532 455688889999999999887733 2211110 0011346889999998777665421
Q ss_pred -------------hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC---CCcEEEEcc
Q psy6266 100 -------------ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP---DNSVIILHA 163 (218)
Q Consensus 100 -------------l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~~~iil~~ 163 (218)
+.|+++|+++++.+.+....++..|+ +++.+|.. +.+ +|++.+++.|++.+ ..+++++..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~~~~~~g~-~~~~v~~d--~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~ 241 (475)
T 3k40_A 166 EVKELHPEWDEHTILGKLVGYCSDQAHSSVERAGLLGGV-KLRSVQSE--NHR-MRGAALEKAIEQDVAEGLIPFYAVVT 241 (475)
T ss_dssp HHHHHCTTSCHHHHHHHEEEEEETTSCHHHHHHHHHHTC-EEEEECCB--TTB-CCHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred HhhccCcccccccccCCeEEEECCCchHHHHHHHHHcCC-ceEEEECC--CCC-cCHHHHHHHHHHHHHCCCccEEEEEE
Confidence 11457899999999999999999999 89999872 346 99999999997531 114555556
Q ss_pred cCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 164 CAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 164 ~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
.++|+||. +|+++|++|++|++.| .+|.+
T Consensus 242 ~~~t~~G~~~~l~~I~~la~~~~~~lhvD--~A~~~ 275 (475)
T 3k40_A 242 LGTTNSCAFDYLDECGPVGNKHNLWIHVD--AAYAG 275 (475)
T ss_dssp BSCTTTCCBCCHHHHHHHHHHTTCEEEEE--CTTGG
T ss_pred ecCCCCcCcCCHHHHHHHHHHhCCeEEEe--HHhHH
Confidence 78999997 8999999999999999 77765
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=8.7e-10 Score=104.00 Aligned_cols=106 Identities=7% Similarity=0.013 Sum_probs=83.8
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCcc----c-----cHHHHHHHH
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRA----V-----DFTGMYEDL 150 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~----~-----d~~~~~~~l 150 (218)
.++|.|+++|+.++++++ +.|||+|++++|+|.++...++..|+ +++.++.. .+.++ + |++.++++|
T Consensus 224 i~~~~Gtt~a~~~~i~al--~~~GD~Vlv~~~~h~s~~~~~~~~G~-~~v~v~~~-~~~~g~~g~i~~~~~d~e~le~~i 299 (755)
T 2vyc_A 224 WSVVVGTSGSNRTIMQAC--MTDNDVVVVDRNCHKSIEQGLMLTGA-KPVYMVPS-RNRYGIIGPIYPQEMQPETLQKKI 299 (755)
T ss_dssp EEESSHHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHHHHHHCC-EEEEECCC-BCTTSCBCCCCGGGGSHHHHHHHH
T ss_pred EEECCcHHHHHHHHHHHh--cCCCCEEEECCCchHHHHHHHHHcCC-EEEEEeCC-CCccccccccCcCCCCHHHHHHHH
Confidence 358889899999988877 68999999999999998888899999 89888763 22222 3 899999998
Q ss_pred hcCCCC--------cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 151 VNAPDN--------SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 151 ~~~~~~--------~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++.+.. ..+++ ++| ||||. +|+++|++|+++++.| +++.
T Consensus 300 ~~~~~~k~~~~~~~klvil-~~p-n~~G~v~dl~~I~~ia~~~~~~livD--eA~~ 351 (755)
T 2vyc_A 300 SESPLTKDKAGQKPSYCVV-TNC-TYDGVCYNAKEAQDLLEKTSDRLHFD--EAWY 351 (755)
T ss_dssp HHCTTTGGGTTCCCSCEEE-ESS-CTTSEEECHHHHHHHHTTTCSEEEEE--CTTC
T ss_pred HhCccccccccCCCeEEEE-ECC-CCCceecCHHHHHHHHHHcCCEEEEE--CcCc
Confidence 653111 13444 456 79997 8999999999999999 8875
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=3.8e-10 Score=106.00 Aligned_cols=124 Identities=8% Similarity=-0.042 Sum_probs=90.9
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH-HHHhCCCcceeE
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-FLNAGFTEAREY 131 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-~~~~g~~~~~~~ 131 (218)
+.++++.+++++ + . +. ..+++.|+++++.++++++ +.|||+|+++.|+|.++... ++..|+ +++.+
T Consensus 175 i~e~e~~lA~~~-g-a-------e~-~i~v~nGtt~an~~ai~al--~~pGD~VLv~~~~H~S~~~~~~~l~Ga-~~v~v 241 (730)
T 1c4k_A 175 AVAAEKHAARVY-N-A-------DK-TYFVLGGSSNANNTVTSAL--VSNGDLVLFDRNNHKSVYNSALAMAGG-RPVYL 241 (730)
T ss_dssp HHHHHHHHHHHT-T-C-------SE-EEEESSHHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHTTTTCC-EEEEE
T ss_pred HHHHHHHHHHHH-C-C-------Cc-EEEECCHHHHHHHHHHHHh--cCCCCEEEEcCCchHHHHHHHHHHCCC-EEEEE
Confidence 578888877665 3 1 12 2468889889999988877 68999999999999988877 788898 88877
Q ss_pred eccCCcCc----cccHHHH-----HHHHhcC------CCCc-EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCce
Q psy6266 132 RYWNPEKR----AVDFTGM-----YEDLVNA------PDNS-VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRI 190 (218)
Q Consensus 132 ~~~~~~~~----~~d~~~~-----~~~l~~~------~~~~-~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~ 190 (218)
+... +.+ .+|++.+ ++.|.+. +.+. .+++.++| ||||. +|+++|++++++++.| +
T Consensus 242 ~~~~-~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~livD--e 317 (730)
T 1c4k_A 242 QTNR-NPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDYIEFD--S 317 (730)
T ss_dssp CEEE-CTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSEEEEE--C
T ss_pred eCCc-cccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCeEEEE--c
Confidence 6521 122 2577777 7777643 1111 33444567 69997 8999999999999999 8
Q ss_pred eec
Q psy6266 191 NMC 193 (218)
Q Consensus 191 ~y~ 193 (218)
+|.
T Consensus 318 Ah~ 320 (730)
T 1c4k_A 318 AWV 320 (730)
T ss_dssp TTC
T ss_pred ccc
Confidence 875
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.01 E-value=6.7e-10 Score=95.94 Aligned_cols=147 Identities=14% Similarity=0.142 Sum_probs=92.7
Q ss_pred chHHHHHHHHHhhcCCCCccCcC---CCC---cHHHH----HHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHH
Q psy6266 27 LPVVRQAEKELAADDSLNHEYLP---VLG---LESFS----SAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEF 96 (218)
Q Consensus 27 ~~~v~~a~~~~~~~~~~~~~Y~~---~~G---~~~lr----~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~ 96 (218)
++.|++|..+.+.+ ...+.|.. ..| ..+|+ +++++++ + . +++. ++.|.| ++|+.+++++
T Consensus 36 ~~~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~-g-~-----~~~~--i~~~sG-t~a~~~a~~~ 104 (405)
T 2vi8_A 36 SRAVMEAQGSVLTN-KYAEGYPGRRYYGGCEYVDIVEELARERAKQLF-G-A-----EHAN--VQPHSG-AQANMAVYFT 104 (405)
T ss_dssp CHHHHHHHTSGGGG-CCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH-T-C-----SEEE--CCCSSH-HHHHHHHHHH
T ss_pred CHHHHHHHHHHhhc-ccccCCCCccccccchHHHHHHHHHHHHHHHHh-C-C-----CceE--EEecCc-HHHHHHHHHH
Confidence 88899887766532 12223322 123 33454 4666665 3 1 1222 224556 9999999887
Q ss_pred HHHhcCCCeEEecCCCchhHHH-H----HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCc-H
Q psy6266 97 LHRILNYTTFYYSKPTWENHRL-V----FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT-A 170 (218)
Q Consensus 97 l~~l~~gd~V~i~~P~y~~y~~-~----~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPT-G 170 (218)
+ +.+||+|++++|+|+.+.. . ....+. +++.++. .++.+.+|++.+++.+.+. +...+++ +|+|++ -
T Consensus 105 ~--~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~-~~~~~~~d~~~l~~~i~~~-~~~~v~~--~~~~~~~~ 177 (405)
T 2vi8_A 105 V--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQY-NFVAYGV-DPETHVIDYDDVREKARLH-RPKLIVA--AAAAYPRI 177 (405)
T ss_dssp H--CCTTCEEEEECGGGTCCTTTTCTTSHHHHHS-EEEEECB-CTTTCSBCHHHHHHHHHHH-CCSEEEE--CCSSCCSC
T ss_pred h--cCCCCEEEEecccccchhcccchhhhcccee-EEEeccc-ccccCCcCHHHHHHHHHhc-CCeEEEE--eCCCCCcc
Confidence 7 6799999999999998853 1 122234 5556654 2234678999999988642 1234443 344432 2
Q ss_pred H---HHHHHhhcCeEEEeeCCceeec
Q psy6266 171 Q---QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 171 ~---~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
. +|.++|++|++++|.| ++|.
T Consensus 178 ~~l~~i~~l~~~~~~~li~D--ea~~ 201 (405)
T 2vi8_A 178 IDFAKFREIADEVGAYLMVD--MAHI 201 (405)
T ss_dssp CCHHHHHHHHHHHTCEEEEE--CTTT
T ss_pred CCHHHHHHHHHHcCCEEEEE--cccc
Confidence 1 8999999999999999 8876
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.00 E-value=3.4e-09 Score=95.42 Aligned_cols=144 Identities=11% Similarity=0.050 Sum_probs=100.3
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH-----hc-CCC------eEEecCCC
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR-----IL-NYT------TFYYSKPT 112 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~-----l~-~gd------~V~i~~P~ 112 (218)
..|..+.|..++.+.+.+++.. ..+ .+.+. ++.|.|+++|+.+++.++.. +. +|| +|+++++.
T Consensus 138 ~~~~~s~~~~~le~~~~~~la~-l~g--~~~~~--~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~ 212 (515)
T 2jis_A 138 YTYEIAPVFVLMEEEVLRKLRA-LVG--WSSGD--GIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC 212 (515)
T ss_dssp TCTTTCHHHHHHHHHHHHHHHH-HHT--CSSCE--EEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS
T ss_pred CchhhchHHHHHHHHHHHHHHH-HhC--CCCCC--eEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc
Confidence 4577777765555554444321 111 22333 46899999998877766521 01 476 89999999
Q ss_pred chhHHHHHHHhCCC--cceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH-----HHHHHhhcCeE
Q psy6266 113 WENHRLVFLNAGFT--EAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ-----QVAHMVDKHHV 182 (218)
Q Consensus 113 y~~y~~~~~~~g~~--~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i 182 (218)
++++...++..|.. +++.+|. .+.+.+|++.+++.|.+. ..++.+++...++||||. +|.++|+++++
T Consensus 213 h~s~~~~~~~~g~g~~~v~~v~~--~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~ 290 (515)
T 2jis_A 213 HYSIQKGAAFLGLGTDSVRVVKA--DERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGL 290 (515)
T ss_dssp CTHHHHHHHHTTSCGGGEEEECB--CTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHcCCCCCcEEEEec--CCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCC
Confidence 99999888888751 3566665 234678999999988642 113556666789999997 89999999999
Q ss_pred EEeeCCceeeccCCC
Q psy6266 183 YLLRSGRINMCGLTT 197 (218)
Q Consensus 183 ~ii~D~r~~y~~l~~ 197 (218)
|++.| .+|.+...
T Consensus 291 ~l~vD--~a~~~~~~ 303 (515)
T 2jis_A 291 WLHVD--AAWGGSVL 303 (515)
T ss_dssp EEEEE--ETTGGGGG
T ss_pred eEEEe--hhhhhHHH
Confidence 99999 88886543
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.00 E-value=5.3e-10 Score=100.59 Aligned_cols=152 Identities=13% Similarity=0.061 Sum_probs=82.4
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCC---CCc---HHHH----HHHHHHhcCCCCCCCcCCCce-EEEEeccChhHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPV---LGL---ESFS----SAATRMLLGGDASPPLREGRA-FGVQTLSGTGALRVG 93 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~---~G~---~~lr----~aia~~~~~~~~~~~~~~~~v-~~~~t~G~~~al~~~ 93 (218)
++++.|++|+...+.+ ....+|..+ .|. .+|. +.+++ +++ . +.+.+ ..+++.+|++|+.++
T Consensus 65 ~~~~~V~eA~~~~l~~-~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~-l~g-~-----~~~~~~~~v~~~sGt~An~~a 136 (490)
T 2a7v_A 65 FCSRAALEALGSCLNN-KYSEGYPGKRYYGGAEVVDEIELLCQRRALE-AFD-L-----DPAQWGVNVQPYSGSPANLAV 136 (490)
T ss_dssp CCCHHHHHHHTSGGGT-CCCCC------------CTHHHHHHHHHHHH-HTT-C-----CTTTEEEECCCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcC-CCccCCCcccccCccHHHHHHHHHHHHHHHH-HcC-C-----CcccCceEEeCCchHHHHHHH
Confidence 3789999987765533 122334332 233 3555 33333 344 2 22223 123555789999988
Q ss_pred HHHHHHhcCCCeEEecCCCchhHHH--------HHHHhCCCcceeEecc-CCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 94 AEFLHRILNYTTFYYSKPTWENHRL--------VFLNAGFTEAREYRYW-NPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 94 ~~~l~~l~~gd~V~i~~P~y~~y~~--------~~~~~g~~~~~~~~~~-~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+.++ ++|||+|++++|.|.+|.. .+...|. ....+++. +.+.+.+|++.+++.+... ++.+++.+.
T Consensus 137 l~al--~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~-~~~~~~~~vd~~~~~iD~d~le~~l~~~--~~klIi~~~ 211 (490)
T 2a7v_A 137 YTAL--LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSI-FFESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGT 211 (490)
T ss_dssp HHHH--CCSCEECCC--------------------------------CCBCTTTCSBCHHHHHHHHHHH--CCSEEEECC
T ss_pred HHHH--cCCCCEecccCccccccccchhhhcchhHHHcCC-eEEEEecccccccCCcCHHHHHHHHhhc--CCcEEEEcC
Confidence 8877 7899999999999876532 2334454 33333331 2335678999999988642 233455567
Q ss_pred CCCCcHH---HHHHHhhcCeEEEeeCCcee
Q psy6266 165 AHNPTAQ---QVAHMVDKHHVYLLRSGRIN 191 (218)
Q Consensus 165 p~NPTG~---~l~~l~~~~~i~ii~D~r~~ 191 (218)
++||+.. +|.++|++|+++++.| ++
T Consensus 212 s~~~~~~dl~~i~~ia~~~g~~livD--~A 239 (490)
T 2a7v_A 212 SAYARLIDYARMREVCDEVKAHLLAD--MA 239 (490)
T ss_dssp SSCCSCCCHHHHHHHHHHTTCEEEEE--CG
T ss_pred CCCCCcccHHHHHHHHHHcCCEEEEc--cc
Confidence 8999864 8999999999999999 65
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=3.5e-09 Score=99.05 Aligned_cols=122 Identities=7% Similarity=0.038 Sum_probs=90.3
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEe
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYR 132 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~ 132 (218)
+.++++.+|+++.. ++ ..+++.|+++|+..+++++ ++|||+|++++|+|.++...+++.|+ +++.++
T Consensus 197 i~eaE~~lA~~fGa---------~~-a~~v~nGts~An~~ai~al--~~pGD~VLv~r~~H~S~~~~l~lsGa-~pv~v~ 263 (715)
T 3n75_A 197 HKEAEQYIARVFNA---------DR-SYMVTNGTSTANKIVGMYS--APAGSTILIDRNCHKSLTHLMMMSDV-TPIYFR 263 (715)
T ss_dssp HHHHHHHHHHHHTC---------SE-EEEESSHHHHHHHHHHHHH--CCTTCEEEEESSCCHHHHHHHHHSCC-EEEEEC
T ss_pred HHHHHHHHHHHhCC---------CC-ceEECcHHHHHHHHHHHHh--CCCCCEEEECCCccHHHHHHHHHcCC-EEEEEe
Confidence 56777777766532 22 2457888889988888877 78999999999999999999999999 898887
Q ss_pred ccCCcCccc---------cHHHHHHHHhcCCC-C-cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 133 YWNPEKRAV---------DFTGMYEDLVNAPD-N-SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 133 ~~~~~~~~~---------d~~~~~~~l~~~~~-~-~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.. .+.+++ |++.+++.|++.+. + ..+++.++| ||+|. +|.++|+++. ++.| +++.
T Consensus 264 ~~-~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livD--EAH~ 334 (715)
T 3n75_A 264 PT-RNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFD--SAWV 334 (715)
T ss_dssp CC-BCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEE--CTTC
T ss_pred cc-ccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEc--cccc
Confidence 53 223332 89999999976421 1 123444567 99997 7888888764 7899 7765
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=98.68 E-value=4e-08 Score=84.74 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=74.2
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH--HHHHHhCC-CcceeEeccCC------cC-ccccHHHHHHH
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR--LVFLNAGF-TEAREYRYWNP------EK-RAVDFTGMYED 149 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~--~~~~~~g~-~~~~~~~~~~~------~~-~~~d~~~~~~~ 149 (218)
++.|.|+++|+.+++.+ +.+||+|+++++.|..+. .+.+..|. -+++.++.... .. ..+|++.+++.
T Consensus 54 v~~~~sgt~a~~~~~~~---~~~gd~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~ 130 (379)
T 3ke3_A 54 VIIPGSGTYGMEAVARQ---LTIDEDCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAK 130 (379)
T ss_dssp EEEESCHHHHHHHHHHH---HCTTCEEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHH
T ss_pred EEEcCChhHHHHHHHHh---CCCCCeEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHH
Confidence 45788999999987643 469999999999998764 34455553 04555554210 01 14689999998
Q ss_pred HhcCCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeec
Q psy6266 150 LVNAPDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 150 l~~~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
+.+. ++.+++.+.++||||. +|.++|++|+++++.| ++..
T Consensus 131 i~~~--~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D--~~~~ 178 (379)
T 3ke3_A 131 IKED--KSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVID--CIAS 178 (379)
T ss_dssp HHHH--TCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEE--CTTC
T ss_pred Hhhc--CCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEE--eccc
Confidence 8532 2233444567899996 6889999999999999 6543
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.6e-09 Score=90.01 Aligned_cols=149 Identities=12% Similarity=-0.075 Sum_probs=83.5
Q ss_pred ccCchHHHHHHHHHhhc-CCCCccCcCC-CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE-eccChhHHHHHHHHHHHh
Q psy6266 24 PWVLPVVRQAEKELAAD-DSLNHEYLPV-LGLESFSSAATRMLLGGDASPPLREGRAFGVQ-TLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~-~~~~~~Y~~~-~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~-t~G~~~al~~~~~~l~~l 100 (218)
.++++.|.+|+.+.... .+..+.|... ....++|+.+++++ + . -.+++| +. |.|+++|+.++++++ +
T Consensus 49 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~-g-~----~~~~~i--~~~t~g~t~al~~~~~~l--~ 118 (398)
T 2fyf_A 49 SKVRLEQLQTLTTTAAALFGTSHRQAPVKNLVGRVRSGLAELF-S-L----PDGYEV--ILGNGGATAFWDAAAFGL--I 118 (398)
T ss_dssp CCCCHHHHHGGGTTTTTTTTSCTTSHHHHHHHHHHHHHHHHHT-T-C----CTTCEE--EEEETCHHHHHHHHHHHT--C
T ss_pred CCCCHHHHHHHhhcCCCccCcCcCCHHHHHHHHHHHHHHHHHh-C-C----CCCceE--EEeCCchhHHHHHHHHHh--c
Confidence 45678888876542101 0111222211 23567788877765 3 1 112454 35 999999999998876 5
Q ss_pred cCCCeEEecCCCchhH-HHHHHHh--CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--HHHH
Q psy6266 101 LNYTTFYYSKPTWENH-RLVFLNA--GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ--QVAH 175 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~y-~~~~~~~--g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~--~l~~ 175 (218)
+|| .+.+..+.|+.. ....... |+ +++.++.. +....+. ++ ++++.+++.++|+||||. .+.+
T Consensus 119 ~~g-v~~v~~~~~~~~~~~~~~~~~~g~-~~~~v~~~--~g~~~~~-----~i---~~~~~~v~~~~~~nptG~~~~~~~ 186 (398)
T 2fyf_A 119 DKR-SLHLTYGEFSAKFASAVSKNPFVG-EPIIITSD--PGSAPEP-----QT---DPSVDVIAWAHNETSTGVAVAVRR 186 (398)
T ss_dssp SSC-EEEEECSHHHHHHHHHHHHCTTSC-CCEEEECC--TTCCCCC-----CC---CTTCSEEEEESEETTTTEECCCCC
T ss_pred CCC-eEEEeCCHHHHHHHHHHHHhCCCC-ceEEEecC--CCCCCCc-----cc---cCCCCEEEEeCcCCCcceecchHH
Confidence 677 223333433211 2234555 77 78888763 2222222 12 234444544679999998 3333
Q ss_pred HhhcCeEEEeeCCceeeccCC
Q psy6266 176 MVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 176 l~~~~~i~ii~D~r~~y~~l~ 196 (218)
+++.+++++|.| ++|....
T Consensus 187 i~~~~~~~vivD--~a~~~~~ 205 (398)
T 2fyf_A 187 PEGSDDALVVID--ATSGAGG 205 (398)
T ss_dssp CTTCC-CEEEEE--CTTTTTT
T ss_pred hhhhcCCeEEEE--eccccCC
Confidence 444489999999 8887543
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=8.4e-09 Score=92.18 Aligned_cols=168 Identities=16% Similarity=0.005 Sum_probs=103.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.+...-| ...|.|.+|..+.++. .....| +..-..+|.+.++++.-+ .+++ +.+
T Consensus 97 ~dG~~yiD~~~~~~~~~lG--h~~p~V~~Av~~q~~~-~~~~~~-~~~~~~~Lae~L~~~~p~--------~~~v--~~~ 162 (465)
T 2yky_A 97 VDGHAYVNFLGEYTAGLFG--HSHPVIRAAVERALAV-GLNLST-QTENEALFAEAVCDRFPS--------IDLV--RFT 162 (465)
Confidence 4677888998886544455 3467777776665533 112223 444556666666654311 2343 578
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH----HhCCCcc--eeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL----NAGFTEA--REYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~----~~g~~~~--~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
.+|++|+..++.+.+....+++|++.+++|..+..... ..|. .+ +.+++ .|++.+++.+++..++.
T Consensus 163 nSGseA~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~-~~~~~~~~~-------~d~~~l~~~l~~~~~~~ 234 (465)
T 2yky_A 163 NSGTEANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNA-PYHVVLGVY-------NDVEGTADLLKRHGHDC 234 (465)
Confidence 89999999888764323346999999999977654322 1122 11 11221 26677777775321233
Q ss_pred EEEEcccCCCCcHH---------HHHHHhhcCeEEEeeCCceeeccCC
Q psy6266 158 VIILHACAHNPTAQ---------QVAHMVDKHHVYLLRSGRINMCGLT 196 (218)
Q Consensus 158 ~iil~~~p~NPTG~---------~l~~l~~~~~i~ii~D~r~~y~~l~ 196 (218)
.+++....+|+||. +|.++|++|++++|.| |+|. +.
T Consensus 235 aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~D--Ev~~-~r 279 (465)
T 2yky_A 235 AAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFD--EVMT-SR 279 (465)
Confidence 34443434556894 6889999999999999 9998 53
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=2.3e-06 Score=75.91 Aligned_cols=113 Identities=10% Similarity=0.034 Sum_probs=79.3
Q ss_pred EEEeccChh-HHHHHHHHHHHh-cCCCeEEecCCCchhHHHHHHHhCCCcceeEec-cCCcCccccHHHHHHHHhcCC-C
Q psy6266 80 GVQTLSGTG-ALRVGAEFLHRI-LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRY-WNPEKRAVDFTGMYEDLVNAP-D 155 (218)
Q Consensus 80 ~~~t~G~~~-al~~~~~~l~~l-~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~-~~~~~~~~d~~~~~~~l~~~~-~ 155 (218)
.+.+.|+|+ ++.+++.+.+.. .+++.|+++.=+.-+....+.+.|+ .++.++. +..+...+|.+.++++|++.+ .
T Consensus 119 ~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r~aHkSv~kAl~l~Gl-~p~~v~~~~~~~~~~id~~~le~aI~~~~~~ 197 (450)
T 3bc8_A 119 CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGF-EPVVIENVLEGDELRTDLKAVEAKIQELGPE 197 (450)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTC-EEEEECCEEETTEEECCHHHHHHHHHHHCGG
T ss_pred EEEECCHHHHHHHHHHHHcchhhcCCCEEEEECCcHHHHHHHHHHcCC-eeEEEEeeecCccCCcCHHHHHHHHHhcCCC
Confidence 468889984 454444443221 1389999999999888889999999 8888754 223345779999999997643 1
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
...+++.+...+.+|. +|+++|++|++|++.| ++|...
T Consensus 198 ~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD--~A~G~~ 240 (450)
T 3bc8_A 198 HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN--NAYGLQ 240 (450)
T ss_dssp GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE--CTTTTT
T ss_pred CEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEE--CCCchh
Confidence 2233333323333453 8999999999999999 898753
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.4e-06 Score=74.29 Aligned_cols=113 Identities=9% Similarity=0.042 Sum_probs=80.4
Q ss_pred EEEeccChhHHHHHHHH-HHHhcC-CCeEEecCCCchhHHHHHHHhCCCcceeEec-cCCcCccccHHHHHHHHhcCCCC
Q psy6266 80 GVQTLSGTGALRVGAEF-LHRILN-YTTFYYSKPTWENHRLVFLNAGFTEAREYRY-WNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~-l~~l~~-gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~-~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
.+.+.|+|++......+ +..-.| ||.|++|.=+.-+....+.+.|+ +|+.++. +..+..++|++.++++|++....
T Consensus 137 ~flVnGsTgg~lamilaa~r~~rpg~d~VIvpRn~HKSv~kAliL~Gl-~Pv~V~p~~d~~~~~id~e~le~aI~e~ga~ 215 (501)
T 3hl2_A 137 CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGF-EPVVIENVLEGDELRTDLKAVEAKVQELGPD 215 (501)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTC-EEEEECEEEETTEEEECHHHHHHHHHHHCGG
T ss_pred EEEECcHHHHHHHHHHHHcCcccCCCCEEEEecchHHHHHHHHHHcCC-eEEEEeeeecccccCCCHHHHHHHHHhcCCC
Confidence 57889999665544443 321113 49999999999888889999999 8988754 33344577999999999875323
Q ss_pred cEEEEc-ccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 157 SVIILH-ACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 157 ~~iil~-~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.++++. .++.|-.+. +|+++|++|+|+++.| ++|...
T Consensus 216 ~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVD--eAhGah 258 (501)
T 3hl2_A 216 CILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVN--NAYGVQ 258 (501)
T ss_dssp GEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEE--CTTCTT
T ss_pred cEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEe--Ccchhh
Confidence 444433 333332222 8999999999999999 998754
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00013 Score=64.86 Aligned_cols=172 Identities=10% Similarity=-0.080 Sum_probs=97.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|...||+.-|.....-| ...|.|.+|.++.++. ..+...+..-..+|.+.+++.+-+ .+++ .-+
T Consensus 84 ~dG~~ylD~~~g~~~~~lG--H~hp~v~~Av~~q~~~--~~~~~~~~~~~~~lae~l~~~~p~--------~~~v--~f~ 149 (454)
T 4ao9_A 84 ADGHRYADFIAEYTAGVYG--HSAPEIRDAVIEAMQG--GINLTGHNLLEGRLARLICERFPQ--------IEQL--RFT 149 (454)
T ss_dssp TTCCEEEESSGGGGTTTTC--SCCHHHHHHHHHHHHT--CSCCCSEESSHHHHHHHHHHHSTT--------CSEE--EEE
T ss_pred CCCCEEEEccccHHhhccc--CCCHHHHHHHHHHHhc--CCCccCCcHHHHHHHHHHHHhCCC--------CCEE--EEe
Confidence 4677788876553223344 3567888887766643 233333444456677777665422 2444 467
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCC-CcceeEeccCCcCccccHHHHHHHHhcCCCC-cEEEE
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGF-TEAREYRYWNPEKRAVDFTGMYEDLVNAPDN-SVIIL 161 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~-~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~-~~iil 161 (218)
.+|++|...++.+.+....-+.|+..+-+|-..... .+. ..+..+|.........|.+.+++.+++..+. ..+++
T Consensus 150 ~SGsEA~e~AiklAr~~tgr~~ii~~~~~yHG~t~~---~~~~~~~~~~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIv 226 (454)
T 4ao9_A 150 NSGTEANLMALTAALHFTGRRKIVVFSGGYHGGVLG---FGARPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLV 226 (454)
T ss_dssp SSHHHHHHHHHHHHHHHHTCCEEEEETTCBCSTTCB---BSSSBCTTSCCSEEEEECTTCHHHHHHHHHHTGGGEEEEEE
T ss_pred CchHHHHHHHHHHHHhcccCCeEEEEeCCcCCcccc---ccccccCccCCCCcccCCCchHHHHHHHHhhcCCceEEEEe
Confidence 888998888877654433346788888887664311 111 0111111100000012778888888764222 23333
Q ss_pred cccCCC------CcHH--HHHHHhhcCeEEEeeCCceeecc
Q psy6266 162 HACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 162 ~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
-+-..| |-|. +|.++|++|++++|.| |+..|
T Consensus 227 EPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~D--EV~tG 265 (454)
T 4ao9_A 227 EPMQGASGCIPGQPDFLQALRESATQVGALLVFD--EVMTS 265 (454)
T ss_dssp CSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEE--CTTGG
T ss_pred ccccCCCCccCCchhhHHHHHHHHhhcCCEEEEE--CCCcC
Confidence 221111 2233 7999999999999999 88765
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00015 Score=62.93 Aligned_cols=149 Identities=9% Similarity=-0.094 Sum_probs=79.4
Q ss_pred CccCchHHHHHHHHHhhcCCCCc-c-Cc-CCCC------cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHH
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNH-E-YL-PVLG------LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVG 93 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~-~-Y~-~~~G------~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~ 93 (218)
..+.|+.|.+|+.+...+-.... . |. ...| +.+.|+.+++++.. -++++| ++.|.|+|+++.++
T Consensus 21 ~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~------~~~~ev-if~t~~~T~a~n~a 93 (377)
T 3e77_A 21 QSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAV------PDNYKV-IFLQGGGCGQFSAV 93 (377)
T ss_dssp SCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTC------CTTEEE-EEESSHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCC------CCCCeE-EEEcCchHHHHHHH
Confidence 34778999998877553200000 0 00 1122 34556666666532 112344 34568999999998
Q ss_pred HHHHHHhcC--CCeEEecCC-CchhHH-HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCc
Q psy6266 94 AEFLHRILN--YTTFYYSKP-TWENHR-LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT 169 (218)
Q Consensus 94 ~~~l~~l~~--gd~V~i~~P-~y~~y~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPT 169 (218)
+.-+ +.+ ||+|++..- .|.... ..++..|. .++.++. ......+++.++..+ .+++.++......|-|
T Consensus 94 ~~~l--~~~~~Gd~v~~~~~g~~~~~~~~~a~~~G~-~~~~~~~--~~~~~~~~~~~~~~i---~~~t~lV~~~h~et~t 165 (377)
T 3e77_A 94 PLNL--IGLKAGRCADYVVTGAWSAKAAEEAKKFGT-INIVHPK--LGSYTKIPDPSTWNL---NPDASYVYYCANETVH 165 (377)
T ss_dssp HHHH--GGGSTTCEEEECCCSHHHHHHHHHHTTTSE-EEECSCC--CSSSCSCCCGGGCCC---CTTCSCEEEESEETTT
T ss_pred HHhc--cCCCCCCeEEEEECCHHHHHHHHHHHHhCC-ceEEecc--CCCcCCCCChHHhcc---CCCccEEEEeCccCch
Confidence 8765 444 899876544 444311 12334465 4444443 112334444433223 2344333333345566
Q ss_pred HH--HHHHHhhcCeEEEeeCC
Q psy6266 170 AQ--QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 170 G~--~l~~l~~~~~i~ii~D~ 188 (218)
|. .+ ++++++++++.|+
T Consensus 166 G~~~pi--i~~~~~~~~~vD~ 184 (377)
T 3e77_A 166 GVEFDF--IPDVKGAVLVCDM 184 (377)
T ss_dssp TEECSS--CCCCTTCCEEEEC
T ss_pred heEchh--hhccCCCEEEEEc
Confidence 87 44 6788999999993
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00026 Score=62.24 Aligned_cols=44 Identities=36% Similarity=0.570 Sum_probs=37.6
Q ss_pred HHHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHHcCC
Q psy6266 171 QQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSIP 215 (218)
Q Consensus 171 ~~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~~~~ 215 (218)
.|+ +++++++||++.+||+++++++..||+++|+||+++|++..
T Consensus 375 e~v-~~L~e~~Vy~~~~gRis~Agl~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 375 AQC-EYCQNHNIFITVSGRANMAGLTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp HHH-HHHHHTTEECCTTCEEEGGGCCHHHHHHHHHHHHHHHC---
T ss_pred HHH-HHHHhCCEEEcCCCEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 354 56688999999999999999999999999999999998764
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00039 Score=60.44 Aligned_cols=156 Identities=10% Similarity=-0.089 Sum_probs=83.6
Q ss_pred EEeCCCCCccCchHHHHHHHHHhhcCCC-------CccCc--CCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 16 AYRTEECKPWVLPVVRQAEKELAADDSL-------NHEYL--PVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 16 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~-------~~~Y~--~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.|-+.-|..+.++.|.+|+.+...+-.. .++.. -..-+.+.|+.+++++.. . ++++| ++.|.|+
T Consensus 28 ~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~-~-----~~~ev-if~t~~~ 100 (386)
T 3qm2_A 28 VFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNI-P-----SNYKV-LFCHGGG 100 (386)
T ss_dssp CEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTC-C-----TTEEE-EEEESCT
T ss_pred CccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCC-C-----CCceE-EEEcCCc
Confidence 3445556667899999887653321000 00011 134578889999887742 1 12345 3457899
Q ss_pred hhHHHHHHHHHHHhcCCCeEEec-CCCchhHHHH--HHHhCCCcceeEecc-CCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYS-KPTWENHRLV--FLNAGFTEAREYRYW-NPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~-~P~y~~y~~~--~~~~g~~~~~~~~~~-~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|+++.+++..+ +.+||+|++. .-.|. +... .+..| ++..++.. ......++++.++..+. +++.++..
T Consensus 101 T~a~n~ai~~l--~~~gd~v~~~~~~~~~-~~~~~~a~~~G--~v~~v~~~~~~~G~~~~~~~~~~~l~---~~t~lV~~ 172 (386)
T 3qm2_A 101 RGQFAGVPLNL--LGDKTTADYVDAGYWA-ASAIKEAKKYC--APQIIDAKITVDGKRAVKPMREWQLS---DNAAYLHY 172 (386)
T ss_dssp THHHHHHHHHH--CTTCCEEEEEESSHHH-HHHHHHHTTTS--EEEEEECEEEETTEEEECCGGGCCCC---TTCSCEEE
T ss_pred hHHHHHHHHhc--cCCCCeEEEEeCCHHH-HHHHHHHHHhC--CeEEEecCcccCCCCCCchHHHhhcC---CCCcEEEE
Confidence 99999988765 6789998644 44454 3322 12223 35555442 01111245555544342 34444443
Q ss_pred ccCCCCcHHH---HHHHhhcCeEEEeeCC
Q psy6266 163 ACAHNPTAQQ---VAHMVDKHHVYLLRSG 188 (218)
Q Consensus 163 ~~p~NPTG~~---l~~l~~~~~i~ii~D~ 188 (218)
....|-||.. |.+++ ++++++.|+
T Consensus 173 ~h~et~tG~~i~pi~~i~--~g~~~~vDa 199 (386)
T 3qm2_A 173 CPNETIDGIAIDETPDFG--PEVVVTADF 199 (386)
T ss_dssp CSEETTTTEECCCCCCCC--TTCCEEEEC
T ss_pred ECCcCCcCEecCchhhhc--CCCEEEEEc
Confidence 3345555873 55554 789999993
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00052 Score=59.07 Aligned_cols=155 Identities=8% Similarity=-0.116 Sum_probs=85.6
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC--ccCc-CCCC------cHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN--HEYL-PVLG------LESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~--~~Y~-~~~G------~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
.+++|+-| ..++++.|.+|+.+...+.... .-|. ...| +.+.|+.+++++.. -++++|
T Consensus 5 ~~~~f~pg-------pt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~------~~~~~v 71 (361)
T 3m5u_A 5 RKINFSAG-------PSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYEL------NDDYEV 71 (361)
T ss_dssp CCEECCSS-------SCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTC------CTTEEE
T ss_pred ceEeecCC-------CCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCC------CCCceE
Confidence 55667666 3467899999877654320000 0010 1122 44556666666532 122345
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeE-EecCCCchhHH-HHHHHhCCCcceeEeccCCcC-ccccHHHHHHHHhcCCC
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTF-YYSKPTWENHR-LVFLNAGFTEAREYRYWNPEK-RAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V-~i~~P~y~~y~-~~~~~~g~~~~~~~~~~~~~~-~~~d~~~~~~~l~~~~~ 155 (218)
++.|.|+|+++.+++.-+ + +||++ .+..-.|.... ...+..|+ ++..++.. .+. +..+.+. + |. +
T Consensus 72 -~f~t~~~T~a~n~~~~~~--~-~~~~~~~i~~~~~~~~~~~~a~~~G~-~v~~~~~~-~~g~~~~~~~~--~-l~---~ 139 (361)
T 3m5u_A 72 -LFLQGGASLQFAMIPMNL--A-LNGVCEYANTGVWTKKAIKEAQILGV-NVKTVASS-EESNFDHIPRV--E-FS---D 139 (361)
T ss_dssp -EEESSHHHHHHHHHHHHH--C-CSSCEEEEECSHHHHHHHHHHHHTTC-CEEEEEEC-TTTTSCSCCCC--C-CC---T
T ss_pred -EEEcCcHHHHHHHHHHhc--C-CCCeEEEEeCCHHHHHHHHHHHHcCC-ceEEEecc-cCcCCCcCChh--h-cC---C
Confidence 346999999999988765 5 78876 34444555421 23455688 88888763 221 1133333 3 53 3
Q ss_pred CcEEEEcccCCCCcHHHHHHHhhcCeEEEeeCC
Q psy6266 156 NSVIILHACAHNPTAQQVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D~ 188 (218)
++.++......|-||..+-.+++ ++++++.|+
T Consensus 140 ~t~lv~~~~~e~~tG~~~~~i~~-~~~~~~vD~ 171 (361)
T 3m5u_A 140 NADYAYICSNNTIYGTQYQNYPK-TKTPLIVDA 171 (361)
T ss_dssp TSSEEEEESEETTTTEECSSCCC-CSSCEEEEC
T ss_pred CCCEEEEeCCCCCcceeCCcccc-cCCEEEEEc
Confidence 34444334345566873223555 499999993
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0025 Score=56.55 Aligned_cols=123 Identities=15% Similarity=0.079 Sum_probs=69.6
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceE-EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH--------HHh
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAF-GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF--------LNA 123 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~-~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~--------~~~ 123 (218)
++.|...-+..+|+ -. ..+.. -++-.+|++|-..++.+| ++|||+|+-.+..-+.|..-= ...
T Consensus 101 iE~la~~rak~lF~-a~-----~A~w~VNVQP~SGs~AN~avy~Al--l~PGD~ilg~~l~~GGHltHg~~~~~~~v~~s 172 (490)
T 3ou5_A 101 IELLCQRRALEAFD-LD-----PAQWGVNVQPYSGSPANLAVYTAL--LQPHDRIMGLDLPDGGHLTHGYMSDVKRISAT 172 (490)
T ss_dssp HHHHHHHHHHHHTT-CC-----TTTEEEECCCSSHHHHHHHHHHHH--CC-CCCEECBC---------------------
T ss_pred HHHHHHHHHHHHhC-CC-----ccccCCCCCcCCHHHHHHHHHHHH--cCCCCEEEecccCCCCcccccccCCCcccccc
Confidence 45555556777887 32 22211 136778888888888877 889999999999888775311 111
Q ss_pred C--CCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcH--H-HHHHHhhcCeEEEeeC
Q psy6266 124 G--FTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--Q-QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 124 g--~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG--~-~l~~l~~~~~i~ii~D 187 (218)
| . +.+.|+. ++++..+|++.+++...+.. +.+|+...-..|-- . .+.++|.+-+.+++.|
T Consensus 173 g~~~-~~~~Y~v-d~~t~~IDyd~~~~~A~~~k--PklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~D 237 (490)
T 3ou5_A 173 SIFF-ESMPYKL-NPKTGLIDYNQLALTARLFR--PRLIIAGTSAYARLIDYARMREVCDEVKAHLLAD 237 (490)
T ss_dssp --------CBCE-ETTTTEECHHHHHHHHHHHC--CSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEE
T ss_pred cccc-ccccccc-CCCCCcccHHHHHHHHhhcC--CCeEEECCccCccccCHHHHHHHHhhcccEEEec
Confidence 1 1 3344444 34456789999998776643 33444322222221 2 7899999999999999
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0061 Score=54.02 Aligned_cols=181 Identities=12% Similarity=0.051 Sum_probs=93.0
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCC-CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDS-LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~-~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++... ....+.+.....+|-+.+.+..-+ . ..+++ +
T Consensus 60 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~-~-----~~~~v--~ 129 (456)
T 4atq_A 60 DVDGNSFIDLGSGIAVTSVG--ASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPG-D-----HAKRT--V 129 (456)
T ss_dssp ETTSCEEEESSHHHHTCTTC--TTCHHHHHHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSC-S-----SCEEE--E
T ss_pred eCCCCEEEEccccHHHHhcC--CCCHHHHHHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCC-C-----CCcEE--E
Confidence 35677788887664333455 456778877665553311 111233444444555555554321 1 11333 4
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH-HHhCCC------------cceeEec----cCCcCccccHH
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF-LNAGFT------------EAREYRY----WNPEKRAVDFT 144 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~-~~~g~~------------~~~~~~~----~~~~~~~~d~~ 144 (218)
-+.+|++|...++++-+....-+.|+...-+|-...... ...+-. .+..+|+ ........+.+
T Consensus 130 f~~sGsEA~e~AlklAr~~t~r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~ 209 (456)
T 4atq_A 130 LFNSGAEAVENAVKVARLATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAE 209 (456)
T ss_dssp EESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHH
T ss_pred EeCChHHHHHHHHHHHhhhhcCCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHH
Confidence 667889998888876544444577888888877654322 222210 1112222 11110111233
Q ss_pred HHHHHHh---cC-CCCc--EEEEcccCC------CCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 145 GMYEDLV---NA-PDNS--VIILHACAH------NPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 145 ~~~~~l~---~~-~~~~--~iil~~~p~------NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..++.++ .. .+.. .+++=+-.. =|.|. .|.++|++|++.+|.| |+..|+
T Consensus 210 ~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~D--EV~tG~ 272 (456)
T 4atq_A 210 AAKRAITMIEKQIGGDQVAAIIIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIAD--EVQSGF 272 (456)
T ss_dssp HHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEE--CTTTTT
T ss_pred HHHHHHHHHHHhhcCCceEEEEeccccCCCCccccchhhhHHHHHHHhhcCCceEec--cccccc
Confidence 3333332 11 1122 233322111 12343 7999999999999999 998875
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.14 Score=45.54 Aligned_cols=180 Identities=11% Similarity=0.079 Sum_probs=86.6
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCc-HHHHHHHHHHhcCCCCCCCcCCCceEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGL-ESFSSAATRMLLGGDASPPLREGRAFGV 81 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~-~~lr~aia~~~~~~~~~~~~~~~~v~~~ 81 (218)
-..|...||+.-|.....-| .-.|.|.+|.++.++. .. .|....|. .+....+++++.. ... ..-++| .
T Consensus 63 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~q~~~--l~-~~~~~~~~~~~~~~~lAe~L~~-~~p--~~~~~v--~ 132 (473)
T 4e3q_A 63 DVNGRRYLDANSGLWNMVAG--FDHKGLIDAAKAQYER--FP-GYHAFFGRMSDQTVMLSEKLVE-VSP--FDSGRV--F 132 (473)
T ss_dssp ETTCCEEEETTTTTTTCTTC--SCCHHHHHHHHHHHHH--CC-CCCCCTTEEEHHHHHHHHHHHH-HSS--CSSCEE--E
T ss_pred eCCCCEEEEcccCHHHhhcc--CCCHHHHHHHHHHHHh--cc-cccccccccCHHHHHHHHHHHh-hCC--CCccEE--E
Confidence 35677778876664333345 3467777776655433 11 23333332 1222234444422 100 112454 4
Q ss_pred EeccChhHHHHHHHHHHHh-----cCC-CeEEecCCCchhHHHHHHHhCCCcc------------eeEec--c--CCcCc
Q psy6266 82 QTLSGTGALRVGAEFLHRI-----LNY-TTFYYSKPTWENHRLVFLNAGFTEA------------REYRY--W--NPEKR 139 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l-----~~g-d~V~i~~P~y~~y~~~~~~~g~~~~------------~~~~~--~--~~~~~ 139 (218)
-+.+|++|...++++.... .++ ..|+...-+|-........... .+ ..++. + .....
T Consensus 133 f~~sGsEA~e~AiKlAr~~~~~~g~~~r~~ii~~~~~yHG~t~~a~s~tg-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 211 (473)
T 4e3q_A 133 YTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSASMTG-KPYNSVFGLPLPGFVHLTCPHYWRYGEEG 211 (473)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSC-CGGGGGGTCSCTTEEEECCCCHHHHSCTT
T ss_pred EeCchHHHHHHHHHHHHHHHHhcCCCCcceEEEeeceECCCccccccccc-cccccccCCCCCcccccCCCccccccccc
Confidence 7788899888877754321 133 4567777777653322222222 11 11111 0 00000
Q ss_pred cc-------cHHHHHHHHhcCCCCcE--EEEcccCC------CCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 140 AV-------DFTGMYEDLVNAPDNSV--IILHACAH------NPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 140 ~~-------d~~~~~~~l~~~~~~~~--iil~~~p~------NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.. ..+.+++.+.+..+..+ +++=+-.. -|-|. +|.++|++|++.+|.| |+..||
T Consensus 212 ~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~D--EV~tGf 282 (473)
T 4e3q_A 212 ETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISD--EVICGF 282 (473)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEE--CTTTSS
T ss_pred chhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEecc--CccccC
Confidence 00 12233344433222222 23211111 12343 8999999999999999 999887
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=88.44 E-value=0.21 Score=43.21 Aligned_cols=41 Identities=34% Similarity=0.717 Sum_probs=36.8
Q ss_pred HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHHc
Q psy6266 172 QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTS 213 (218)
Q Consensus 172 ~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~~ 213 (218)
++.++ ++++|+++.+||++|++++.+|+++++++|+++++.
T Consensus 364 ~~~~L-~~~gV~v~p~~Ris~a~~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 364 IAEHL-KTHHIYIINNGRINVSGITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp GTTTT-TTTTEECCTTSEEEGGGCCTTHHHHHHHHHHHHHHC
T ss_pred HHHHH-HHCCEeecCCCeEEEeccCHHHHHHHHHHHHHHHhh
Confidence 45555 899999999999999999999999999999999864
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 218 | ||||
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 3e-29 | |
| d1ajsa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig | 1e-12 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 1e-24 | |
| d3tata_ | 397 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 2e-10 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 2e-21 | |
| d7aata_ | 401 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chi | 4e-10 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 4e-20 | |
| d2ay1a_ | 394 | c.67.1.1 (A:) Aromatic aminoacid aminotransferase, | 7e-11 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 8e-20 | |
| d1yaaa_ | 412 | c.67.1.1 (A:) Aspartate aminotransferase, AAT {Bak | 3e-11 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 2e-18 | |
| d2q7wa1 | 396 | c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT | 2e-11 |
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 110 bits (275), Expect = 3e-29
Identities = 95/183 (51%), Positives = 122/183 (66%), Gaps = 14/183 (7%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYRT++C+PWVLPVVR+ E+ +A + SLNHEYLP+LGL F + A+R+ LG D SP L+E
Sbjct: 39 AYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALGDD-SPALQE 97
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYT-----TFYYSKPTWENHRLVFLNAGFTEARE 130
R GVQ+L GTGALR+GAEFL R N T Y S PTWENH VF AGF + R
Sbjct: 98 KRVGGVQSLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGFKDIRS 157
Query: 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHV 182
YRYW+ EKR +D G DL NAP+ S+ +LHACAHNPT +Q+A ++ + +
Sbjct: 158 YRYWDTEKRGLDLQGFLSDLENAPEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFL 217
Query: 183 YLL 185
+
Sbjct: 218 FPF 220
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Score = 63.8 bits (154), Expect = 1e-12
Identities = 28/46 (60%), Positives = 39/46 (84%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214
+QV +++++ H+YLL SGRINMCGLTT+NLD+VA +IH+AVT I
Sbjct: 366 NPKQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 98.1 bits (243), Expect = 1e-24
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 2/178 (1%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y E+ L V +AE L A YLP+ GL + A +L G D P L++
Sbjct: 35 LYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGAD-HPVLKQ 93
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R +QTL G+GAL+VGA+FL R + + S PTWENH +F AGF Y +++
Sbjct: 94 QRVATIQTLGGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGFE-VSTYPWYD 152
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQVAHMVDKHHVYLLRSGRINMC 193
V F + L P S+++LH C HNPT + + + +L++ +
Sbjct: 153 EATNGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPF 210
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} Length = 397 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Score = 57.3 bits (137), Expect = 2e-10
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+A QV + ++ VYL+ SGR+ + GL T N+ VA+A +
Sbjct: 355 SAAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 88.9 bits (219), Expect = 2e-21
Identities = 70/158 (44%), Positives = 96/158 (60%), Gaps = 4/158 (2%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYR + KP+VL VR+AE A ++ EYLP+ GL F+ A+ + L G+ S +
Sbjct: 37 AYRDDNGKPYVLNCVRKAEAM-IAAKKMDKEYLPIAGLADFTRASAELAL-GENSEAFKS 94
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILN-YTTFYYSKPTWENHRLVFLNAGFTEAREYRYW 134
GR VQ +SGTG+LRVGA FL R Y KP+W NH +F +AG + YRY+
Sbjct: 95 GRYVTVQGISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGLQ-LQAYRYY 153
Query: 135 NPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQQ 172
+P+ ++DFTG ED+ P+ S+I+LHACAHNPT
Sbjct: 154 DPKTCSLDFTGAMEDISKIPEKSIILLHACAHNPTGVD 191
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Length = 401 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Score = 56.5 bits (135), Expect = 4e-10
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
+QV + + +Y+ + GRI++ G+ + N+ ++A AIH
Sbjct: 358 KPEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVT 400
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 85.1 bits (209), Expect = 4e-20
Identities = 45/156 (28%), Positives = 66/156 (42%), Gaps = 6/156 (3%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ ++ V AE+ + ++ Y + G F A ++LG +
Sbjct: 35 VYKDATGHTPIMRAVHAAEQRMLETET-TKTYAGLSGEPEFQKAMGELILGDGL----KS 89
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
+ T+ GTGALR E + S PTW NH + G + YRY++
Sbjct: 90 ETTATLATVGGTGALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-PVQTYRYFD 148
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ 171
E R VDF GM DL A +++LH C HNPT
Sbjct: 149 AETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGA 184
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Score = 58.5 bits (140), Expect = 7e-11
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHD 209
T +QV + ++ +Y++ RIN+ GL + +A+AI +
Sbjct: 351 TPEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIE 391
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 84.7 bits (208), Expect = 8e-20
Identities = 69/177 (38%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
AYR + KPWVLP V+ AEK + D S NHEYL + GL S +S A +++ G S L+E
Sbjct: 38 AYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIF-GTQSDALQE 96
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
R VQ+LSGTGAL + A+F + Y SKPTW NH +F N G A + N
Sbjct: 97 DRVISVQSLSGTGALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGLKTATYPYWAN 156
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA--------QQVAHMVDKHHVYL 184
E +++D G + AP+ S+ +LH+CAHNPT Q+ + +
Sbjct: 157 -ETKSLDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIA 212
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} Length = 412 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Score = 59.6 bits (143), Expect = 3e-11
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T Q V + + H VYL+ SGR ++ GL N+++VA+AI + V
Sbjct: 366 TPQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVV 408
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 80.4 bits (197), Expect = 2e-18
Identities = 58/178 (32%), Positives = 86/178 (48%), Gaps = 11/178 (6%)
Query: 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE 75
Y+ E K VL V++AE+ L +++ YL + G+ F +L G S + +
Sbjct: 35 VYKDETGKTPVLTSVKKAEQYLLENET-TKNYLGIDGIPEFGRCTQELLF-GKGSALIND 92
Query: 76 GRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN 135
RA QT GTGALRV A+FL + + + S P+W NH+ VF +AG REY Y++
Sbjct: 93 KRARTAQTPGGTGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGLEV-REYAYYD 151
Query: 136 PEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPT--------AQQVAHMVDKHHVYLL 185
E +DF + L A V++ H C HNPT Q +A + + L
Sbjct: 152 AENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPL 209
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} Length = 396 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Score = 60.0 bits (144), Expect = 2e-11
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 169 TAQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211
T +QV + ++ VY + SGR+N+ G+T N+ + +AI +
Sbjct: 354 TKEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 218 | |||
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 100.0 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 100.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 100.0 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 100.0 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 100.0 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 100.0 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 100.0 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 100.0 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.97 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.97 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.97 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.96 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.96 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.96 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.95 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.95 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.95 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.95 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.94 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.94 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.93 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.92 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.89 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.87 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.83 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.74 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.63 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.6 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 99.54 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.4 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.22 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 99.17 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 98.95 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 98.94 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 98.9 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 98.9 | |
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 98.75 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 98.74 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 98.69 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 98.52 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 98.5 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 98.46 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 98.46 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 98.44 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 98.41 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 98.37 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 98.35 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 98.35 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 98.21 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 98.2 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 98.15 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 98.14 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 98.11 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 98.1 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 98.07 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 98.07 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 98.04 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 97.99 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 97.85 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 97.73 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 97.57 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 97.53 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 97.46 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 97.44 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 97.44 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 97.41 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 97.4 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 97.37 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 97.34 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 97.2 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 97.0 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 96.93 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 96.91 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 96.6 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 96.51 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 96.45 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 96.38 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 96.35 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 96.13 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 96.0 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 95.96 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 95.85 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 95.82 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 95.56 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 95.31 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 94.64 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 94.07 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 93.77 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 93.28 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 92.56 |
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=100.00 E-value=3.9e-38 Score=274.81 Aligned_cols=196 Identities=39% Similarity=0.718 Sum_probs=167.5
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.++||||+|+|+|++|+++++++|++|..+++++ +..++|+|+.|+++||+++++++++ +++....+++|.+..+.++
T Consensus 28 ~~~InL~iG~~~d~~~~~~~~~~V~~a~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~-~~~~~~~~~~i~~~~~~~~ 105 (401)
T d7aata_ 28 SKKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAK-KMDKEYLPIAGLADFTRASAELALG-ENSEAFKSGRYVTVQGISG 105 (401)
T ss_dssp TTCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHT-TCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEEEHH
T ss_pred CCcEEccCCCCcCCCCCCCCCHHHHHHHHHHhhC-CCCCCCCCCCCCHHHHHHHHHHHhc-cCCcccCcCceEEeccchH
Confidence 3679999999999999999999999998888865 4567899999999999999999998 8877677788765556666
Q ss_pred hhHHHHHHHHHHH-hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHR-ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~-l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++++.++..++.. ++|||+|++++|+|++|..+++.+|+ +++.+|+..++.+..+++.+.+.+...+++++++++++|
T Consensus 106 ~g~~~~~~~~~~~l~~pGd~Vlv~~P~y~~y~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~p 184 (401)
T d7aata_ 106 TGSLRVGANFLQRFFKFSRDVYLPKPSWGNHTPIFRDAGL-QLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIILLHACA 184 (401)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEEESCCTTHHHHHHHTTC-EEEEEECEETTTTEECHHHHHHHHTTSCTTCEEEEESSS
T ss_pred HHHHHHHHHhhHhhcCCCceEEEecCCCcchhhHHHHcCC-eEEEEeccccccccccHHHHHHHHhcCCCceEEEEecCC
Confidence 6665544443322 78999999999999999999999999 999999977777778999999988776677888888999
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHH
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAI 207 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~ 207 (218)
|||||. +|.++|++|+++||+| ++|.++.|+.........
T Consensus 185 ~NPTG~~~s~e~~~~l~~~a~~~~~~ii~D--e~Y~~l~~~~~~~~~~~~ 232 (401)
T d7aata_ 185 HNPTGVDPRQEQWKELASVVKKRNLLAYFD--MAYQGFASGDINRDAWAL 232 (401)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--ESCTTTTTSCHHHHTHHH
T ss_pred CCCccccCCHHHHHHHHHHHhcceEEEEEe--ccchhhhcCCcccchhhh
Confidence 999997 7999999999999999 999999999776655543
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=100.00 E-value=8.2e-38 Score=273.63 Aligned_cols=199 Identities=49% Similarity=0.827 Sum_probs=170.2
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.++||||+|+|+|++|+++++++|++|.+++..+....|+|+|+.|+++||+++++++++ .++..+..+++.+++|.|+
T Consensus 30 ~~~Inl~iG~~~d~~g~~~~~~~V~~a~~~~~~~~~~~~~Y~p~~G~p~lreaia~~~~~-~~~~~~~~~~~~~~~~~~~ 108 (412)
T d1ajsa_ 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANNSSLNHEYLPILGLAEFRTCASRLALG-DDSPALQEKRVGGVQSLGG 108 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEEEHH
T ss_pred CCcEEeeCCCCcCCCCCCCCcHHHHHHHHHHHhCCCcCCCCCCCCCCHHHHHHHHHHHhc-cCCcccccccceeecccch
Confidence 467999999999999999999999999887765534567899999999999999999998 8877677888888899999
Q ss_pred hhHHHHHHHHHHH-----hcCCCeEEecCCCchhHHHHHHHhCCCcceeEe-ccCCcCccccHHHHHHHHhcCCCCcEEE
Q psy6266 87 TGALRVGAEFLHR-----ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYR-YWNPEKRAVDFTGMYEDLVNAPDNSVII 160 (218)
Q Consensus 87 ~~al~~~~~~l~~-----l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~-~~~~~~~~~d~~~~~~~l~~~~~~~~ii 160 (218)
++++..+..++.. ++|||+|++++|+|++|..+++.+|+ +++.++ +.+.+.+..|++.+.+.+...+++++++
T Consensus 109 ~~~~~~~~~~l~~~~~~~~~pGd~Vlv~~P~y~~y~~~~~~~G~-~~v~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~i 187 (412)
T d1ajsa_ 109 TGALRIGAEFLARWYNGTNNKDTPVYVSSPTWENHNGVFTTAGF-KDIRSYRYWDTEKRGLDLQGFLSDLENAPEFSIFV 187 (412)
T ss_dssp HHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTHHHHHHHHTTC-SCEEEEECEETTTTEECHHHHHHHHHHSCTTCEEE
T ss_pred hhHHHHHHHHHHHHhhhcCCCCCEEEEeCCcchhhHHHHHHcCC-eEEEeecccccccccccHHHHHHHHHhccCCcEEE
Confidence 9888877766533 48999999999999999999999999 776554 4444445679999988887766788889
Q ss_pred EcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHH
Q psy6266 161 LHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHD 209 (218)
Q Consensus 161 l~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~ 209 (218)
++++||||||. +|+++|++|+++||+| ++|.++.|++.+..+.+...
T Consensus 188 l~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~D--e~Y~~l~~~~~~~~~~~~~~ 242 (412)
T d1ajsa_ 188 LHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFD--SAYQGFASGNLEKDAWAIRY 242 (412)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--ESCTTTTTSCHHHHTHHHHH
T ss_pred EecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEec--HhhhhhhcCCcccchhhhhh
Confidence 99999999997 7999999999999999 99999999988776655443
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=100.00 E-value=9.9e-37 Score=267.11 Aligned_cols=199 Identities=39% Similarity=0.688 Sum_probs=171.3
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
++|||++|+|+|++|+++++++|++|.+.+..+....|+|+|+.|+++||+++++++++ .++....++++.+++|.|+.
T Consensus 30 ~kInL~iG~~~d~~g~~~~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lr~aia~~~~~-~~~~~~~~~~~~~~~~~~~~ 108 (412)
T d1yaaa_ 30 TKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSSYNHEYLGITGLPSLTSNAAKIIFG-TQSDALQEDRVISVQSLSGT 108 (412)
T ss_dssp SCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTTCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEEEHHH
T ss_pred CcEEeecCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCCCCCHHHHHHHHHHHhc-ccCccccccceeEEecccch
Confidence 47999999999999999999999999877765544568899999999999999999998 87765667777666777777
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
+++.+++.++..++|||+|++|+|+|++|..+++.+|+ +++.+|+...+.+..+++.+.+.+...+++++++++++|||
T Consensus 109 ~~~~~~~~~~~~~~~gd~Vlip~P~~~~y~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~P~N 187 (412)
T d1yaaa_ 109 GALHISAKFFSKFFPDKLVYLSKPTWANHMAIFENQGL-KTATYPYWANETKSLDLNGFLNAIQKAPEGSIFVLHSCAHN 187 (412)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCTTHHHHHHTTTC-CEEEEECEETTTTEECHHHHHHHHHHSCTTCEEEEECSSCT
T ss_pred hHHHHHHHHHhccCCCCEEecccccCchhHHHHHHcCC-ceecccccccccccccchhhhcccccCCCceEEEEecCCCC
Confidence 77777665555578999999999999999999999999 99999997777777899999888887667778888899999
Q ss_pred CcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHH
Q psy6266 168 PTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDA 210 (218)
Q Consensus 168 PTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~ 210 (218)
|||. +|+++|++++++||+| ++|.+|.|++....+......
T Consensus 188 PTG~~~s~~~~~~i~~~a~~~~~~ii~D--e~Y~~l~~~~~~~~~~~~~~~ 236 (412)
T d1yaaa_ 188 PTGLDPTSEQWVQIVDAIASKNHIALFD--TAYQGFATGDLDKDAYAVRLG 236 (412)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEE--ESCTTTSSSCHHHHTHHHHHH
T ss_pred CccccCCHHHHHHHHhhhccCCEEEeec--ceeeecccCCcccchhhhhhh
Confidence 9997 7999999999999999 999999999888777665544
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.9e-37 Score=266.74 Aligned_cols=188 Identities=31% Similarity=0.516 Sum_probs=164.8
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.++|||++|+|+|++|+++++++|++|.+++.++ +..++|+|+.|+++||+++++++++ +++....++++..++|.|+
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~~~~~-~~~~~Y~p~~G~~~lR~aia~~~~~-~~~~~~~~~~~~~~~~~~~ 103 (396)
T d2q7wa1 26 PGKINLGIGVYKDETGKTPVLTSVKKAEQYLLEN-ETTKNYLGIDGIPEFGRCTQELLFG-KGSALINDKRARTAQTPGG 103 (396)
T ss_dssp --CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHH-CCCCCCCCTTCCHHHHHHHHHHHHC-TTCHHHHTTCEEEEEESHH
T ss_pred CCcEEeeCCCccCCCCCCCCCHHHHHHHHHHhhC-CCCCCCCCCcCCHHHHHHHHHHHHh-hcCCcccccceeeeccchH
Confidence 3578999999999999999999999999888766 4577899999999999999999988 8776666777767788888
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++++.+.+.++..+++||+|++|+|+|++|..+++.+|+ +++.+++..++.+..++....+.+.+..+++++++++|||
T Consensus 104 ~~~~~l~~~~l~~~~~gd~Vlvp~P~y~~y~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~ 182 (396)
T d2q7wa1 104 TGALRVAADFLAKNTSVKRVWVSNPSWPNHKSVFNSAGL-EVREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCH 182 (396)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEEEESCCTHHHHHHHHTTC-EEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSC
T ss_pred HHHHHHHHHHHhhcccceEEEEecCCCccchHHHHHcCC-eeEecccccccccccccchHHHHHHHhccCcEEEEecCCc
Confidence 888888777665578999999999999999999999999 9999999776666678888888777766778889999999
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||. +|+++|++|+++||+| ++|+++.++.
T Consensus 183 NPTG~~~s~e~~~~l~~la~~~~~~ii~D--e~Y~~l~~~~ 221 (396)
T d2q7wa1 183 NPTGIDPTLEQWQTLAQLSVEKGWLPLFD--FAYQGFARGL 221 (396)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEE--ESCTTSSSCH
T ss_pred CCcCeecCHHHHHHHHHHHhcCCeEEEEe--ccccccccCC
Confidence 99997 7999999999999999 9999999983
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-37 Score=265.99 Aligned_cols=186 Identities=30% Similarity=0.507 Sum_probs=156.9
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
.++||||+|+|+|++|+++++++|++|..++..++...++|+|+.|+++||+++++++++ .++..+++++|. +|.|+
T Consensus 26 ~~kInL~iG~~~d~~g~~p~~~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~-~~~~~~~~~~i~--~~~~~ 102 (397)
T d3tata_ 26 SDKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFG-ADHPVLKQQRVA--TIQTL 102 (397)
T ss_dssp SSCEECSCCSCCCTTSSCCCCHHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTC-SSCHHHHTTCEE--ECCBS
T ss_pred CCcEEccCCCCcCCCCCCCCcHHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhh-ccCCcCCcCcEE--EecCc
Confidence 356999999999999999999999999887765544577899999999999999999998 877767778764 44444
Q ss_pred hhH--HHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 87 TGA--LRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 87 ~~a--l~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++ ..+.+.+...++|||+|++++|+|++|..+++.+|+ +++.+|+..++.+..+++.+.+.+...++++++++++|
T Consensus 103 ~~~~~~~l~~~~~~~~~pgd~Vlv~~P~y~~y~~~~~~~G~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (397)
T d3tata_ 103 GGSGALKVGADFLKRYFPESGVWVSDPTWENHVAIFAGAGF-EVSTYPWYDEATNGVRFNDLLATLKTLPARSIVLLHPC 181 (397)
T ss_dssp HHHHHHHHHHHHHHHHCSSCCCEECSSCCTTHHHHHHTTTC-CCEECCCCCTTTSSCCHHHHHHHHTTCCSSCCCEECSS
T ss_pred hhHHHHHHHHHHhhhcCCCCcceecccCccccHHHHHHcCC-EEEEEecchhhccccchHHHHHHhhhcccccEEEEecC
Confidence 443 333222223378999999999999999999999999 99999997666667789998888877667788888899
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. +|.++|++++++||+| ++|.++.|+
T Consensus 182 p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D--e~Y~~l~~~ 221 (397)
T d3tata_ 182 CHNPTGADLTNDQWDAVIEILKARELIPFLD--IAYQGFGAG 221 (397)
T ss_dssp SCSSSCCCCCHHHHHHHHHHHHHTTCCCEEC--BSCTTSSSC
T ss_pred CCCCCCeeCCHHHHHHHHHHHhhcCeeEEee--hhhhhhccC
Confidence 9999997 7999999999999999 999999998
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=100.00 E-value=1.9e-36 Score=263.06 Aligned_cols=186 Identities=27% Similarity=0.437 Sum_probs=158.5
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.+||||+|+|+|++|+++++++|++|++++.++ ...|+|+|+.|+++||+++++++++ .++..... ..++|+|++
T Consensus 27 ~~InL~iG~~~d~~g~~~~~~~V~~A~~~~~~~-~~~~~Y~p~~G~~~lr~aia~~~~~-~~~~~~~~---~~~~~~~~~ 101 (394)
T d2ay1a_ 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLET-ETTKTYAGLSGEPEFQKAMGELILG-DGLKSETT---ATLATVGGT 101 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHH-CCCCCCCCSSCCHHHHHHHHHHHHG-GGCCGGGE---EEEEEEHHH
T ss_pred CCEEccCCCccCCCCCCCCCHHHHHHHHHHhhC-CCCCCCCCCCCCHHHHHHHHHHHhc-cccccccc---cceeccCch
Confidence 578999999999999999999999999988866 4567899999999999999999987 66543322 345777777
Q ss_pred hHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 88 GALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
++..+.+.++..+++||+|++|+|+|++|..+++.+|+ +++.+++..++.+..++..+.+.+...++++++++++||||
T Consensus 102 ~~~~l~~~~~~~~~~gd~V~~p~p~~~~y~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~N 180 (394)
T d2ay1a_ 102 GALRQALELARMANPDLRVFVSDPTWPNHVSIMNFMGL-PVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHN 180 (394)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESCCHHHHHHHHHHTC-CEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCT
T ss_pred HHHHHHHHHhhhcCCceEEEEecccccchHHHHHHcCC-EEEEecccchhcccccchhHHHHHhhcccCcEEEEeCCCCC
Confidence 77666655544478999999999999999999999999 99999987666666788888887777667788899999999
Q ss_pred CcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCHH
Q psy6266 168 PTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNLD 201 (218)
Q Consensus 168 PTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~ 201 (218)
|||. +|+++|++|+++||+| ++|.+|.|+.-.
T Consensus 181 PTG~~~s~e~~~~l~~la~~~~~~ii~D--e~Y~~l~~~~~~ 220 (394)
T d2ay1a_ 181 PTGANLTLDQWAEIASILEKTGALPLID--LAYQGFGDGLEE 220 (394)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEE--ECCTTSSSCHHH
T ss_pred CCCCCCCHHHHHHHHHHhhcceEEEEEe--ccchhhcccccc
Confidence 9997 7999999999999999 999999998533
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=100.00 E-value=4.6e-33 Score=240.92 Aligned_cols=177 Identities=15% Similarity=0.114 Sum_probs=153.2
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|.++|+|++|+ +++++|+.|++|+++++++ ..++|+++.|.++||+++++++.. .++..+++++| ++|.
T Consensus 29 ~G~~vi~l~~g~-----p~~~~p~~i~~a~~~~~~~--~~~~Y~~~~G~~~lR~~ia~~~~~-~~~~~~~~~~i--~it~ 98 (382)
T d1b5pa_ 29 QGVDLVALTAGE-----PDFDTPEHVKEAARRALAQ--GKTKYAPPAGIPELREALAEKFRR-ENGLSVTPEET--IVTV 98 (382)
T ss_dssp TTCCCEECCCSS-----CSSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-TTCCCCCGGGE--EEES
T ss_pred CCCCeEECCCCC-----CCCCCCHHHHHHHHHHHhc--CCcCCCCCCCCHHHHHHHHhhhhh-hcccccccccc--eecC
Confidence 589999999994 4568899999999887764 467899999999999999999966 66656778886 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
|+++|+.++++++ ++|||+|++++|+|++|...++.+|+ +++.+++...+.+.+|++.+++.+. +++.+++.++
T Consensus 99 G~~~al~~~~~~l--~~~gd~vl~~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~ 172 (382)
T d1b5pa_ 99 GGSQALFNLFQAI--LDPGDEVIVLSPYWVSYPEMVRFAGG-VVVEVETLPEEGFVPDPERVRRAIT---PRTKALVVNS 172 (382)
T ss_dssp HHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTC-EEEEEECCGGGTTCCCHHHHHTTCC---TTEEEEEEES
T ss_pred CHHHHHHHHHHHh--CCCCCEEEECCCCcHHHHHHHHHhcC-eEEEEecccccccCCCHHHHHHhCC---CCCeEEEECC
Confidence 9999999999887 78999999999999999999999999 9999998655667789988877663 4566666789
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||||. +|.++|++|+++||+| ++|.++.+++
T Consensus 173 P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~D--e~y~~~~~~~ 213 (382)
T d1b5pa_ 173 PNNPTGAVYPKEVLEALARLAVEHDFYLVSD--EIYEHLLYEG 213 (382)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBSSS
T ss_pred CCCCcchhCCHHHHHHHHHHHHHcCeEEEEE--ccccceecCC
Confidence 9999997 7999999999999999 9999998864
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=100.00 E-value=4.6e-33 Score=241.79 Aligned_cols=178 Identities=12% Similarity=0.050 Sum_probs=153.0
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|.+||||++|. +++++|+.|++|+++++++ +.++|++..|.++||+++++++.. .++..+++++| ++|
T Consensus 27 ~~g~~vi~l~~G~-----p~~~~p~~v~~a~~~~~~~--~~~~Y~~~~G~~~lR~aia~~~~~-~~g~~~~~~~i--~it 96 (388)
T d1j32a_ 27 AEGIDVCSFSAGE-----PDFNTPKHIVEAAKAALEQ--GKTRYGPAAGEPRLREAIAQKLQR-DNGLCYGADNI--LVT 96 (388)
T ss_dssp TTTCCCEECCCSS-----CSSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHCCCCCGGGE--EEE
T ss_pred HCCCCeEECCCCC-----CCCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHHHHH-hcccCCCCceE--EEc
Confidence 3589999999994 3567899999998888764 567899999999999999999865 55555777876 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
+|+++++.++++++ ++|||+|++++|+|++|..+++..|+ +++.+++..++.+.+|++.+++.+. +++.+++.+
T Consensus 97 ~G~~~al~~~~~~~--~~~gd~Vlv~~P~y~~~~~~~~~~~~-~~v~~~~~~~~~~~~d~~~l~~~~~---~~~~~~~~~ 170 (388)
T d1j32a_ 97 NGGKQSIFNLMLAM--IEPGDEVIIPAPFWVSYPEMVKLAEG-TPVILPTTVETQFKVSPEQIRQAIT---PKTKLLVFN 170 (388)
T ss_dssp SHHHHHHHHHHHHH--CCTTCEEEEESSCCTHHHHHHHHTTC-EEEEECCCGGGTTCCCHHHHHHHCC---TTEEEEEEE
T ss_pred CCHHHHHHHHHHHH--hCCCCEEEEcCCCcHHHHHHHHHhcC-eEEEEecccccccCCCHHHHHHhCC---CCCeEEEEC
Confidence 99999999999877 78999999999999999999999999 8999988655667789999998874 456666778
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|+++|++++++||+| ++|..+.+++
T Consensus 171 ~P~NPTG~~~~~~~~~~l~~~~~~~~~~iI~D--e~Y~~~~~~~ 212 (388)
T d1j32a_ 171 TPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSD--EIYEKILYDD 212 (388)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCTT
T ss_pred CCCCCCCcccchhhhhhhhcccccCCeEEEch--hhhhcccccC
Confidence 99999997 7899999999999999 9999888864
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.97 E-value=1.5e-31 Score=231.08 Aligned_cols=178 Identities=12% Similarity=0.100 Sum_probs=148.8
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCC-CcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASP-PLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~-~~~~~~v~~~~ 82 (218)
.+++++|||++|. +++++|+.|++++++++++ ..++|+|..|.++||+++++++.. ..+. ...+++| ++
T Consensus 22 ~~~~dvi~l~~g~-----p~~~~p~~v~~~~~~a~~~--~~~~Y~~~~G~~~lr~aia~~~~~-~~~~~~~~~~~i--~~ 91 (388)
T d1gdea_ 22 AGMKDVISLGIGE-----PDFDTPQHIKEYAKEALDK--GLTHYGPNIGLLELREAIAEKLKK-QNGIEADPKTEI--MV 91 (388)
T ss_dssp HHCTTCEECCCCS-----CCSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHCCCCCTTTSE--EE
T ss_pred hCCCCeEECCCCC-----CCCCCCHHHHHHHHHHHhc--CccCCCCCcCCHHHHHHHHHHHHh-hccccCCChhee--ee
Confidence 4567899999994 3467899999998888754 467899999999999999999843 2222 2334554 58
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|+++++.++++++ ++|||+|++++|+|++|...++..|+ +++.+|+..++.+++|++.+++.+. +++.+++.
T Consensus 92 t~G~~~~l~~~~~~l--~~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~~ 165 (388)
T d1gdea_ 92 LLGANQAFLMGLSAF--LKDGEEVLIPTPAFVSYAPAVILAGG-KPVEVPTYEEDEFRLNVDELKKYVT---DKTRALII 165 (388)
T ss_dssp ESSTTHHHHHHHTTT--CCTTCEEEEEESCCTTHHHHHHHHTC-EEEEEECCGGGTTCCCHHHHHHHCC---TTEEEEEE
T ss_pred ccCcchHHHHHHHHh--cCCCCEEEECCCCcHHHHHHHHHcCC-EEEEeecccccCCCCCHHHHHHhCc---cCCeEEEE
Confidence 999999999998877 78999999999999999999999999 9999998766667889999988774 44566777
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|.++|++|+++||+| ++|.++.+++
T Consensus 166 ~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~D--e~y~~~~~~~ 208 (388)
T d1gdea_ 166 NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISD--EVYEHFIYDD 208 (388)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCTT
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEE--cCChhhhhcc
Confidence 899999997 6889999999999999 9999987763
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=1e-31 Score=233.73 Aligned_cols=181 Identities=13% Similarity=0.033 Sum_probs=154.6
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
..|.+||||++|.+.+ .++++|+.|++|+.+++++ ..++|++..|.++||+++++++.. .++..+++++| ++|
T Consensus 27 ~~G~~vi~l~~G~P~~--~df~~p~~i~~a~~~a~~~--~~~~Y~~~~G~~~LR~aia~~~~~-~~g~~~~~~~i--~i~ 99 (395)
T d1xi9a_ 27 KKGIKVIRLNIGDPVK--FDFQPPEHMKEAYCKAIKE--GHNYYGDSEGLPELRKAIVEREKR-KNGVDITPDDV--RVT 99 (395)
T ss_dssp HTTCCCEECCCCCGGG--TTCCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHCCCCCGGGE--EEE
T ss_pred HCCCCeEECCCCCCCC--CCCCCCHHHHHHHHHHHhc--CCCCCCCCCCCHHHHHHHHHhhhh-ccccccccccc--ccc
Confidence 3589999999996432 3468899999998888864 567899999999999999999965 55555677776 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ +++||+|++++|+|++|...++..|+ +++.+++...+.+.+|++.+.+.+. +++.+++.+
T Consensus 100 ~G~~~~~~~~~~~~--~~~Gd~vlv~~P~y~~~~~~~~~~g~-~~v~v~~~~~~~~~~d~~~~~~~~~---~~~~~v~l~ 173 (395)
T d1xi9a_ 100 AAVTEALQLIFGAL--LDPGDEILVPGPSYPPYTGLVKFYGG-KPVEYRTIEEEDWQPDIDDIRKKIT---DRTKAIAVI 173 (395)
T ss_dssp SHHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHHTTC-EEEEEEEEGGGTSEECHHHHHHHCC---TTEEEEEEE
T ss_pred cccchhhhhhhhhh--cCCCCEEEEcCCccccchhhhhhcCC-EEEEEeccccccccchHHHHHHhhc---ccccEEEec
Confidence 99999999998877 78999999999999999999999999 9999998766677889999988774 445666678
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|+++|++|+++||+| ++|.++.+++
T Consensus 174 ~P~NPTG~~~s~~~~~~l~~~~~~~~~~ii~D--e~y~~~~~~~ 215 (395)
T d1xi9a_ 174 NPNNPTGALYDKKTLEEILNIAGEYEIPVISD--EIYDLMTYEG 215 (395)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEE--CTTTTCBSSS
T ss_pred CCCCCccchhhHHHHHHHHhhhhhcCeeEEec--cccccccccc
Confidence 99999997 7999999999999999 9999988764
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.97 E-value=4.8e-31 Score=230.10 Aligned_cols=184 Identities=11% Similarity=0.081 Sum_probs=149.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCC------CCCcCCCc
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDA------SPPLREGR 77 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~------~~~~~~~~ 77 (218)
..++++|||++|.+ +.+..+.+++.+.++.++..+. ...++|+|..|+++||+++++++.+ ++ +..+++++
T Consensus 27 ~~~~~vI~L~~G~p-~~~~~~~~~~~~~~~~~~~~~~-~~~~~Y~~~~G~~~LReaia~~~~~-~~~~~~~~~~~~~~~~ 103 (412)
T d1bw0a_ 27 PSPKPIIKLSVGDP-TLDKNLLTSAAQIKKLKEAIDS-QECNGYFPTVGSPEAREAVATWWRN-SFVHKEELKSTIVKDN 103 (412)
T ss_dssp CSCSCCEECCCCCT-TTTSCSCCCHHHHHHHHHHHHT-TCSSSCCCTTCCHHHHHHHHHHHHH-HHCCSTTTGGGCCGGG
T ss_pred CCCCCcEECcCCCC-CCCCCccccHHHHHHHHHHhhC-CCCCCCCCCcCCHHHHHHHHHHHHH-hcCcccccCCCCCCCe
Confidence 35678999999963 2233345677888887776654 3567899999999999999999843 22 22356777
Q ss_pred eEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 78 AFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 78 v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
| ++|.|+++|+.++++++ ++|||+|++++|+|+.|..+++..|+ +++.+++...+.+..+++.+++.+. +++
T Consensus 104 I--~it~G~~~al~~~~~~l--~~~Gd~Vlv~~P~y~~~~~~~~~~G~-~~~~v~~~~~~~~~~~~~~l~~~~~---~~~ 175 (412)
T d1bw0a_ 104 V--VLCSGGSHGILMAITAI--CDAGDYALVPQPGFPHYETVCKAYGI-GMHFYNCRPENDWEADLDEIRRLKD---DKT 175 (412)
T ss_dssp E--EEESHHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHTTC-EEEEEEEEGGGTTEECHHHHHHHCC---TTE
T ss_pred E--EEecccccchhhhhhhh--hccccceeeeeccchhhhhhhhccCc-cccccccccccccchhhHHHHhhhh---ccc
Confidence 6 59999999999999887 78999999999999999999999999 9999998655566778888877653 455
Q ss_pred EEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCCH
Q psy6266 158 VIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQNL 200 (218)
Q Consensus 158 ~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ni 200 (218)
.+++.++||||||. +|.++|++|+++||+| ++|.++.|++.
T Consensus 176 ~~~~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~D--e~Y~~~~~~~~ 224 (412)
T d1bw0a_ 176 KLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSD--EIYAGMVFKGK 224 (412)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEE--CTTTTCBCCSS
T ss_pred cccccccccccccccchhhhccccccccccCCeeeech--hhHHHhccCCC
Confidence 66667899999997 6889999999999999 99999988743
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.96 E-value=3.4e-30 Score=223.69 Aligned_cols=176 Identities=12% Similarity=0.067 Sum_probs=145.1
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEec
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTL 84 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~ 84 (218)
.|+++|+|++|. +++++|+.|++|.++++++ +.++|+ .|.++||+++++++.. +++..+++++| ++|.
T Consensus 29 ~g~~vi~l~~g~-----pdf~~p~~v~~al~~~~~~--~~~~Y~--~g~~~Lr~aia~~~~~-~~g~~~~~~~I--~vt~ 96 (394)
T d1c7na_ 29 VGNEVVPLSVAD-----MEFKNPPELIEGLKKYLDE--TVLGYT--GPTEEYKKTVKKWMKD-RHQWDIQTDWI--INTA 96 (394)
T ss_dssp CCTTCCCCCSSS-----CSSCCCHHHHHHHHHHHHH--CCCSSB--CCCHHHHHHHHHHHHH-HHCCCCCGGGE--EEES
T ss_pred cCCCeEEccCCC-----CCCCCCHHHHHHHHHHHhC--CCcCCC--CCCHHHHHHHHHHHHH-hcCCCCCCcce--Eeec
Confidence 578999999994 4578999999998888765 467895 4899999999999965 55555777776 5999
Q ss_pred cChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCc-CccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 85 SGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPE-KRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 85 G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~-~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
|+++++.++++++ ++|||+|++++|+|++|...++..|+ +++.++....+ .+.+|.+.++..+.. +++.+++.+
T Consensus 97 G~~~al~~~~~~~--~~pgd~vi~~~p~~~~~~~~~~~~g~-~~v~~~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~ 171 (394)
T d1c7na_ 97 GVVPAVFNAVREF--TKPGDGVIIITPVYYPFFMAIKNQER-KIIECELLEKDGYYTIDFQKLEKLSKD--KNNKALLFC 171 (394)
T ss_dssp SHHHHHHHHHHHH--CCTTCEEEECSSCCTHHHHHHHTTTC-EEEECCCEEETTEEECCHHHHHHHHTC--TTEEEEEEE
T ss_pred cchhhhhhhhccc--cccccccccccCcccchhhHHhhhhh-cccccccccccccccchhhhhhhhhcc--ccceEEEec
Confidence 9999999999887 78999999999999999999999998 88877664332 234577777666542 456677778
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|+++|++++++||+| ++|.++.++.
T Consensus 172 ~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~D--e~Y~~~~~~~ 213 (394)
T d1c7na_ 172 SPHNPVGRVWKKDELQKIKDIVLKSDLMLWSD--EIHFDLIMPG 213 (394)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEE--CTTTTCBCTT
T ss_pred ccccccceeccHHHhhhhhccccccceeEecc--ccccccccCC
Confidence 99999997 7899999999999999 9999998764
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.96 E-value=4.7e-30 Score=220.91 Aligned_cols=178 Identities=12% Similarity=0.056 Sum_probs=147.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
.+|++||||++|. +++++|+.|++++.+++.+ +.++|++..|.++||+++++++.. ..+...++++| ++|
T Consensus 25 ~~G~~vI~l~~G~-----p~~~~p~~i~~~~~~~~~~--~~~~Y~~~~G~~~lR~aia~~~~~-~~~~~~~~~~i--~~t 94 (375)
T d1o4sa_ 25 KKGEDVINLTAGE-----PDFPTPEPVVEEAVRFLQK--GEVKYTDPRGIYELREGIAKRIGE-RYKKDISPDQV--VVT 94 (375)
T ss_dssp HTTCCCEECCCSS-----CSSCCCHHHHHHHHHHHTT--CCCCCCCTTCCHHHHHHHHHHHHH-HHTCCCCGGGE--EEE
T ss_pred HCCCCeEECCCcC-----CCCCCCHHHHHHHHHHHhc--CCcCCCCCcCCHHHHHHHHhhhhh-ccccccccccc--ccc
Confidence 4699999999994 3467789999998887754 467899999999999999999865 44545667775 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++|+.++++++ ++|||+|++++|+|+.|...+...|. ..+.++....+.+.++.+.++... .++..+++.+
T Consensus 95 ~G~~~al~~~~~~l--~~~gd~vlv~~P~y~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~ 168 (375)
T d1o4sa_ 95 NGAKQALFNAFMAL--LDPGDEVIVFSPVWVSYIPQIILAGG-TVNVVETFMSKNFQPSLEEVEGLL---VGKTKAVLIN 168 (375)
T ss_dssp SHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECCGGGTTCCCHHHHHHTC---CTTEEEEEEE
T ss_pred CcHHHHHHHHHHHH--hCCCCEEEEccCccccchhhhhcccc-ccccccccccccccchhHHHHHhh---ccCccEEEEe
Confidence 99999999999987 78999999999999999999999998 888887765555566777766543 2455667778
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|+++|++|+++||+| +.|..+.++.
T Consensus 169 nP~NPTG~~~s~~~~~~i~~~a~~~~~~ii~D--e~y~~~~~~~ 210 (375)
T d1o4sa_ 169 SPNNPTGVVYRREFLEGLVRLAKKRNFYIISD--EVYDSLVYTD 210 (375)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTSBCSS
T ss_pred CCCCCccCCCCHHHHHHHHHhHHHcCCceehH--hhhccccccc
Confidence 99999997 7899999999999999 9999887763
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.2e-29 Score=215.64 Aligned_cols=172 Identities=10% Similarity=0.009 Sum_probs=144.8
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChh
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTG 88 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~ 88 (218)
+|.|++| |+++++|+.|++|+++.+++ ..++|++..| ++||+++++++.+ +.+..+++++| ++|.|+++
T Consensus 1 ~~~~~~~-----~~df~~p~~i~eal~~~~~~--~~~~Y~~~~g-~~lr~~ia~~~~~-~~g~~~~~~~i--~it~G~~~ 69 (361)
T d1d2fa_ 1 LLPFTIS-----DMDFATAPCIIEALNQRLMH--GVFGYSRWKN-DEFLAAIAHWFST-QHYTAIDSQTV--VYGPSVIY 69 (361)
T ss_dssp CEECCSS-----SCSSCCCHHHHHHHHHHHTT--CCCCCCCSCC-HHHHHHHHHHHHH-HSCCCCCGGGE--EEESCHHH
T ss_pred CcCcCCC-----CCCCCCCHHHHHHHHHHHhC--CCCCCCCCCC-HHHHHHHHHHHHH-HhCCCCCcceE--EEeCCHHH
Confidence 5899999 44689999999998887754 4568999999 7899999999866 65555778876 59999999
Q ss_pred HHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC-cCccccHHHHHHHHhcCCCCcEEEEcccCCC
Q psy6266 89 ALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP-EKRAVDFTGMYEDLVNAPDNSVIILHACAHN 167 (218)
Q Consensus 89 al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~-~~~~~d~~~~~~~l~~~~~~~~iil~~~p~N 167 (218)
++..+++++ ++|||+|++++|+|++|..+++..|. +++.++.... +.+.+|++.+++.+.+ +++.+++.++|||
T Consensus 70 ~l~~~~~~l--~~~gd~Vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~d~~~~~~~~~~--~~~~~i~l~~p~N 144 (361)
T d1d2fa_ 70 MVSELIRQW--SETGEGVVIHTPAYDAFYKAIEGNQR-TVMPVALEKQADGWFCDMGKLEAVLAK--PECKIMLLCSPQN 144 (361)
T ss_dssp HHHHHHHHS--SCTTCEEEEEESCCHHHHHHHHHTTC-EEEEEECEECSSSEECCHHHHHHHHTS--TTEEEEEEESSCT
T ss_pred HHHHHhhhc--cccccccccccccccchhHHHHhhcc-eEEeecccccccccccccccchhhccc--CCceeEEeccccc
Confidence 999998877 78999999999999999999999999 8888876432 3345799999888864 4555666688999
Q ss_pred CcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 168 PTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 168 PTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||. ++.++|++++++||+| ++|.+++++
T Consensus 145 PTG~~~s~~~~~~i~~~~~~~~~~lI~D--e~y~~~~~~ 181 (361)
T d1d2fa_ 145 PTGKVWTCDELEIMADLCERHGVRVISD--EIHMDMVWG 181 (361)
T ss_dssp TTCCCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTCBCS
T ss_pred ccccccchhhhhhhhhhhhhhheeeeec--ccccccccc
Confidence 9996 7899999999999999 999998876
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=4.5e-29 Score=215.67 Aligned_cols=176 Identities=11% Similarity=0.005 Sum_probs=142.4
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
+.|.+||||++|. +++++|+.+++|+.+.. ...++|++..|.++||+++++++.. ..+..+++++| ++|
T Consensus 25 ~~g~~vi~l~~G~-----p~~~~p~~~~~al~~~~---~~~~~Y~~~~G~~~LR~aia~~~~~-~~g~~~~~~~I--~it 93 (389)
T d2gb3a1 25 KRGVRIHHLNIGQ-----PDLKTPEVFFERIYENK---PEVVYYSHSAGIWELREAFASYYKR-RQRVDVKPENV--LVT 93 (389)
T ss_dssp HTTCEEEECSSCC-----CCSCCCTHHHHHHHHTC---CSSCCCCCTTCCHHHHHHHHHHHHH-TSCCCCCGGGE--EEE
T ss_pred HcCCCEEECCCCC-----CCCCCCHHHHHHHHhcC---CCCCCCCCCcCCHHHHHHHHHHHHH-hcCCCcccceE--Eec
Confidence 4689999999994 34678899999887654 2467899999999999999999976 65666778886 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ +++||+|++++|+|+.|...++..|+ +++.++... +....+.+.+... ..++..+++.+
T Consensus 94 ~G~~~~l~~~~~~l--~~~gd~V~i~~P~y~~~~~~~~~~g~-~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~l~ 166 (389)
T d2gb3a1 94 NGGSEAILFSFAVI--ANPGDEILVLEPFYANYNAFAKIAGV-KLIPVTRRM-EEGFAIPQNLESF---INERTKGIVLS 166 (389)
T ss_dssp SHHHHHHHHHHHHH--CCTTCEEEEEESCCTHHHHHHHHHTC-EEEEEECCG-GGTSCCCTTGGGG---CCTTEEEEEEE
T ss_pred cccccccccccccc--ccCCCeEEEeCCCCccccccccccCc-ccccccccc-ccccchhhhhhhh---cccCccEEEeC
Confidence 99999999999887 78999999999999999999999999 888887742 2222232222221 23555666678
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. +|.++|++|+++||+| ++|..+.++.
T Consensus 167 nP~NPtG~~~s~~~~~~i~~~a~~~~~~iI~D--e~y~~~~~~~ 208 (389)
T d2gb3a1 167 NPCNPTGVVYGKDEMRYLVEIAERHGLFLIVD--EVYSEIVFRG 208 (389)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCSS
T ss_pred CCCccccccchHHHHHHHHhhcccCCEEEEEe--cccccccccc
Confidence 99999996 7999999999999999 9999988774
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.3e-29 Score=218.39 Aligned_cols=178 Identities=12% Similarity=0.051 Sum_probs=142.4
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t 83 (218)
.+.++|||++|. +++++|+.|++|+++++++....++|+|..|+++||+++++++.. ..+..+++ ++| ++|
T Consensus 23 ~~~dvI~l~~G~-----p~~~~p~~v~~a~~~al~~~~~~~~Y~~~~G~~~LReaia~~~~~-~~g~~~~~~~~I--~it 94 (418)
T d1w7la_ 23 SEHDVVNLGQGF-----PDFPPPDFAVEAFQHAVSGDFMLNQYTKTFGYPPLTKILASFFGE-LLGQEIDPLRNV--LVT 94 (418)
T ss_dssp HTSCCEECCCCS-----CSSCCCHHHHHHHHHHTSSCGGGGSCCCTTCCHHHHHHHHHHHHH-HHTCCCCHHHHE--EEE
T ss_pred CCCCCEECCCCC-----CCCCCCHHHHHHHHHHHhCCCcccCCCCCcCCHHHHHHHHHHHHH-HhCCCCCcccce--eec
Confidence 467899999995 346779999999888876422356899999999999999999854 43333553 445 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCC----------cCccccHHHHHHHHhcC
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNP----------EKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~----------~~~~~d~~~~~~~l~~~ 153 (218)
.|+++|+.++++++ ++|||+|++++|+|+.|...+...|+ +++.+++... +.+.+|........
T Consensus 95 ~G~~~al~~~~~~l--~~~g~~vlv~~p~~~~y~~~~~~~g~-~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~--- 168 (418)
T d1w7la_ 95 VGGYGALFTAFQAL--VDEGDEVIIIEPFFDCYEPMTMMAGG-RPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKF--- 168 (418)
T ss_dssp SHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECEECC---CCSEEGGGEECCHHHHHHHC---
T ss_pred cCcHHHHHHHHHhh--ccCCceeeccccccchhHHHHHHcCC-EeeccccccccccccccccccCcccchhhhhccc---
Confidence 99999999999987 78999999999999999999999999 8888876421 12234554444333
Q ss_pred CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 154 PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+.+.++++++||||||. +|+++|++++++||+| ++|.++.|+
T Consensus 169 ~~~~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~D--e~Y~~l~~~ 219 (418)
T d1w7la_ 169 TSRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITD--EVYQWMVYD 219 (418)
T ss_dssp CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCT
T ss_pred cccccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhh--hhhHHhhcC
Confidence 356677778999999997 7889999999999999 999999876
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.95 E-value=9.1e-29 Score=216.17 Aligned_cols=178 Identities=12% Similarity=0.046 Sum_probs=142.6
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC-CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCC-CceEEEEe
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD-SLNHEYLPVLGLESFSSAATRMLLGGDASPPLRE-GRAFGVQT 83 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~-~~v~~~~t 83 (218)
+..+|||++|. | ++++|+.+++|+++++++. ...++|++..|.++||+++++++.+ ..+..+++ ++| ++|
T Consensus 25 ~~~~I~L~~G~---P--d~~~p~~i~eal~~a~~~~~~~~~~Y~~~~G~~~lReaiA~~~~~-~~g~~~~p~~~I--~it 96 (418)
T d2r5ea1 25 QYKPLNLGQGF---P--DYHAPKYALNALAAAANSPDPLANQYTRGFGHPRLVQALSKLYSQ-LVDRTINPMTEV--LVT 96 (418)
T ss_dssp HHCCEECSSSC---C--SSCCCHHHHHHHHHHHTCSCGGGGSCCCTTCCHHHHHHHHHHHHH-HHTSCCCTTTSE--EEE
T ss_pred CCCCEEccCCC---C--CCCCCHHHHHHHHHHHhCCCccCcCCCCCCCCHHHHHHHHHHHHH-HhCCCCCccceE--EEc
Confidence 45789999995 3 4567899999988877552 2356899999999999999999864 44444553 665 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcC--------ccccHHHHHHHHhcCCC
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEK--------RAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~--------~~~d~~~~~~~l~~~~~ 155 (218)
.|+++|+.++++++ ++|||.|++++|+|++|...+...|+ +++.+++..... +..+.+.+.+.. ..
T Consensus 97 ~G~~~al~~~~~~l--~~~gd~vlv~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 170 (418)
T d2r5ea1 97 VGAYEALYATIQGH--VDEGDEVIIIEPFFDCYEPMVKAAGG-IPRFIPLKPNKTGGTISSADWVLDNNELEALF---NE 170 (418)
T ss_dssp SHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECEESCCSSCEEGGGEECCHHHHHHHC---CT
T ss_pred CCCchhhhhhhhhc--cccccceeccccccchhhHHHHHcCC-eEEEEEecccccccchhhhhhhhhHHHHhhhh---hc
Confidence 99999999999987 78999999999999999999999999 899988743221 233566655543 34
Q ss_pred CcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 156 NSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++.++++++||||||. +|+++|++|+++||+| ++|..+.++.
T Consensus 171 ~~~~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~D--e~y~~~~~~~ 220 (418)
T d2r5ea1 171 KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSD--EVYEHMVFEP 220 (418)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTTTCBCTT
T ss_pred cccceecCCcCccccccccHHHHHHHhhhhhcCCeeeecc--cchhhhccCC
Confidence 5666777899999997 6899999999999999 9999887763
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.95 E-value=2e-28 Score=213.84 Aligned_cols=183 Identities=11% Similarity=0.098 Sum_probs=144.4
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC-CCCccCcCCCCcHHHHHHHHHHhcCCCCCC-CcCCCceEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD-SLNHEYLPVLGLESFSSAATRMLLGGDASP-PLREGRAFG 80 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~-~~~~~~v~~ 80 (218)
+..|.++|||+.|. ||.+..+.+.++++.+++.++. ...++|+++.|+++||+++++++.. ..+. .+++++|
T Consensus 34 ~~~~~~~I~l~~G~---Pd~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~-~~g~~~~~~~~I-- 107 (420)
T d1vp4a_ 34 FAADKDAISFGGGV---PDPETFPRKELAEIAKEIIEKEYHYTLQYSTTEGDPVLKQQILKLLER-MYGITGLDEDNL-- 107 (420)
T ss_dssp TTTSTTCEECCCCS---CCGGGSCHHHHHHHHHHHHHHSHHHHTSCCCTTCCHHHHHHHHHHHHH-HHCCCSCCGGGE--
T ss_pred HhCCCCcEecCCcC---CCCccCCHHHHHHHHHHHHhhCCccccCCCCCcCCHHHHHHHHHHHHH-HhCCCCCCHHHe--
Confidence 34678999999996 4554445677788877766541 1235799999999999999999854 4333 2567776
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhc-----C-C
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVN-----A-P 154 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~-----~-~ 154 (218)
++|.|+++|+.+++.++ ++|||+|++++|+|++|...++..|+ +++.+++. + .+++++.+...+.+ . .
T Consensus 108 ~it~G~~~al~~~~~~~--~~~Gd~Vlv~~P~y~~~~~~~~~~g~-~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~~~ 181 (420)
T d1vp4a_ 108 IFTVGSQQALDLIGKLF--LDDESYCVLDDPAYLGAINAFRQYLA-NFVVVPLE-D--DGMDLNVLERKLSEFDKNGKIK 181 (420)
T ss_dssp EEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTTC-EEEEEEEE-T--TEECHHHHHHHHHHHHHTTCGG
T ss_pred EeccchhhhHHHHHHhh--hccccccccccccccchhHHHHHHhh-hccccccc-c--cccccchhhhhhhhhHHHhhcc
Confidence 59999999999999877 78999999999999999999999999 89999873 2 35677766554432 1 2
Q ss_pred CCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 155 DNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 155 ~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+.+.+++.++||||||. +++++|++|+++||+| ++|.++.|++
T Consensus 182 ~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~D--e~y~~l~~~~ 232 (420)
T d1vp4a_ 182 QVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVED--DPYGALRYEG 232 (420)
T ss_dssp GEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CSSTTCBCSS
T ss_pred ccceeeEecCCCCccchhhhhhhhhhhhhhhhccccccccc--chhhhccccC
Confidence 33456777899999997 7999999999999999 9999998863
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.94 E-value=6.3e-28 Score=209.32 Aligned_cols=184 Identities=9% Similarity=0.046 Sum_probs=142.2
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcC-CCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADD-SLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
++..+|||++|. |+++..+.+.++++..++++.. ....+|++..|.++||+++++++.. ..+..+++++| ++|
T Consensus 27 ~~~~~i~l~~G~---P~~~~~P~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aia~~l~~-~~g~~~~~~~I--~it 100 (403)
T d1wsta1 27 ETSDVISLAGGL---PAPETFPVETIKKIAVEVLEEHADKALQYGTTKGFTPLRLALARWMEK-RYDIPMSKVEI--MTV 100 (403)
T ss_dssp TSSSCEECCCCC---CCGGGSCHHHHHHHHHHHHHHSHHHHHSCCCSSCCHHHHHHHHHHHHH-HHCCCCTTCEE--EEE
T ss_pred CCCCcEECCCCC---CCccccCHHHHHHHHHHHHHhCcccccCCCCCcCCHHHHHHHHHHHHH-HhCCCCChHHe--eec
Confidence 567899999996 4554455678888887776441 1245799999999999999999864 44445777876 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHH-HHHhcCCCCcEEEEc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMY-EDLVNAPDNSVIILH 162 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~-~~l~~~~~~~~iil~ 162 (218)
.|+++++.++++++ +++||+|++++|+|+.|...++..|+ +++.++............... ....+.++...+++.
T Consensus 101 ~G~~~al~~~~~~l--~~~gd~v~~~~P~y~~~~~~~~~~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (403)
T d1wsta1 101 AGSQQALDLIGRVF--LNPGDPIVVEAPTYLAAIQAFKYYDP-EFISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTV 177 (403)
T ss_dssp SSHHHHHHHHHHHH--CCTTCEEEEEESCCHHHHHHHHTTCC-EEEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEEC
T ss_pred ccchHHHHHHHHHH--hhcCCccccCCCcchhhhHHHhhccc-cceeEeecccCCccccccccchhhhhccccccccccc
Confidence 99999999999887 78999999999999999999999999 888888743221111222222 222233455667888
Q ss_pred ccCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 163 ACAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 163 ~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++||||||. +|+++|++|+++||+| ++|.++.++.
T Consensus 178 ~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~D--e~y~~l~~~~ 220 (403)
T d1wsta1 178 STFQNPAGVTMSVDRRKKLLELANEYDFLIVED--GPYSELRYSG 220 (403)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBCSS
T ss_pred cccCCCCCccCCHHHHHHHHHHHHhcCceeccc--cchhheecCC
Confidence 999999997 7999999999999999 9999887763
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=4.1e-27 Score=203.37 Aligned_cols=176 Identities=13% Similarity=0.107 Sum_probs=143.6
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCc-eEEEEe
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGR-AFGVQT 83 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~-v~~~~t 83 (218)
.|.++|||++|+ | ++++|+.+++|+.+.+++ ..++|+|+.|+++||+++++++.. ..+..+.+++ | ++|
T Consensus 24 ~~~~~i~l~~G~---P--d~~~p~~i~~a~~~~~~~--~~~~Y~~~~G~~~LReaia~~~~~-~~g~~~~~~~~I--~vt 93 (382)
T d1u08a_ 24 QQHQAINLSQGF---P--DFDGPRYLQERLAHHVAQ--GANQYAPMTGVQALREAIAQKTER-LYGYQPDADSDI--TVT 93 (382)
T ss_dssp HHTTCEECCCSS---C--SSCCCHHHHHHHHHHHHT--TCCSCCCTTCCHHHHHHHHHHHHH-HHSCCCCTTTTE--EEE
T ss_pred ccCCCEEccCCC---C--CCCCCHHHHHHHHHHHhc--CCCCCCCCcCCHHHHHHHHHHHHH-HhCCCCCCCceE--Eec
Confidence 456789999995 3 467799999998887754 577999999999999999999865 4444455553 4 599
Q ss_pred ccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 84 LSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
.|+++++.++++++ +++||.|++++|+|++|...+...|+ ....++.. .+.+.+|++.+++.+. +++.+++.+
T Consensus 94 ~G~~~al~~~~~~l--~~~gd~vl~~~p~y~~~~~~~~~~g~-~~~~~~~~-~~~~~~d~~~l~~~~~---~~~~~i~l~ 166 (382)
T d1u08a_ 94 AGATEALYAAITAL--VRNGDEVICFDPSYDSYAPAIALSGG-IVKRMALQ-PPHFRVDWQEFAALLS---ERTRLVILN 166 (382)
T ss_dssp SSHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECC-TTTCCCCHHHHHHHCC---TTEEEEEEE
T ss_pred cchHHHHHHHHhhc--ccccceEEEecccccchhhhhhhccc-cceecccc-cccccCCHHHHhhhhc---cCccEEEEC
Confidence 99999999999987 68999999999999999999999998 77777663 4456678888877654 455566668
Q ss_pred cCCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 164 CAHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 164 ~p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
+||||||. ++.+++++++++++.| +.|..+.++.
T Consensus 167 ~P~NPtG~v~~~~~~~~l~~~~~~~~~~ii~d--~~~~~~~~~~ 208 (382)
T d1u08a_ 167 TPHNPSATVWQQADFAALWQAIAGHEIFVISD--EVYEHINFSQ 208 (382)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEE--CTTTTCBCCS
T ss_pred CCCcccccccccccchhhhhhhccccceeeee--cchhhccccc
Confidence 99999997 6888899999999999 8888776663
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=3.5e-26 Score=195.96 Aligned_cols=167 Identities=19% Similarity=0.144 Sum_probs=137.7
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
..+||||+|. | ++++|+.+++|+++++. ..++|++..|.++||+++++++ + +++++| ++|.|+
T Consensus 25 ~~~I~ls~g~---p--~~~~p~~i~~al~~~l~---~~~~Y~~~~G~~elr~aiA~~~-~------~~~~~I--iit~G~ 87 (368)
T d1v2da_ 25 LGAVNLGQGF---P--SNPPPPFLLEAVRRALG---RQDQYAPPAGLPALREALAEEF-A------VEPESV--VVTSGA 87 (368)
T ss_dssp HTCEECCCCS---C--SSCCCHHHHHHHHHHTT---TSCSCCCTTCCHHHHHHHHHHH-T------SCGGGE--EEESSH
T ss_pred CCCEEecCCC---C--CCCCCHHHHHHHHHHhh---cccCCCCCcCCHHHHHHHHhhc-c------cCCcce--eeccch
Confidence 3579999995 3 35778999999888774 3578999999999999999987 3 455676 599999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccC-CcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWN-PEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~-~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
++++.++++++ +.+||.|++++|+|+.|...++..|. +++.+++.. .+.+.+|++.+++.+. +...+++.++|
T Consensus 88 ~~al~~~~~~l--~~~~d~v~~~~p~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~i~~~~p 161 (368)
T d1v2da_ 88 TEALYVLLQSL--VGPGDEVVVLEPFFDVYLPDAFLAGA-KARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTP 161 (368)
T ss_dssp HHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHHHHTTC-EEEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESS
T ss_pred HHHHHHHhhcc--ccccccccccCCcchhhhhHHHhcCC-ccceeccccccccccCCHHHHHHhhc---cCceEEEEcCC
Confidence 99999999877 67999999999999999999999998 888887632 2345679998887764 34455666889
Q ss_pred CCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 166 HNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 166 ~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
|||||. +|+++|++|++++|+| ++|..+.+.
T Consensus 162 ~NPtG~~~~~~~l~~l~~~a~~~~i~ii~D--~~~~~~~~~ 200 (368)
T d1v2da_ 162 MNPTGLVFGERELEAIARLARAHDLFLISD--EVYDELYYG 200 (368)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCEEEEE--CTTTTCBSS
T ss_pred CCcccccCCHHHHHHHHHHHHHcCCeeeec--hhhhhhccc
Confidence 999997 6889999999999999 888766554
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.92 E-value=3.2e-25 Score=194.17 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=120.9
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCCC--CcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDASP--PLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~~--~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~ 122 (218)
.+|++..|+++||+++++++.. ..+. .+++++| ++|.|+++++.+++.++ ++|||+|++++|+|++|...+..
T Consensus 77 ~~Y~~~~G~~~LR~aiA~~l~~-~~~~~~~~~~e~I--vit~G~~~al~~~~~~l--~~~Gd~Vlv~~P~y~~~~~~~~~ 151 (428)
T d1iaya_ 77 ANFQDYHGLPEFRKAIAKFMEK-TRGGRVRFDPERV--VMAGGATGANETIIFCL--ADPGDAFLVPSPYYPAFNRDLRW 151 (428)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHH-HTTTCSCCCTTSC--EEEEHHHHHHHHHHHHH--CCTTCEEEEESSCCTTHHHHTTT
T ss_pred ccCcCCcchHHHHHHHHHHHHH-HhCCCCCCChhhE--EEcCCHHHHHHHHHHHh--CCCCCEEEEccCCchHHHHHHHH
Confidence 4799999999999999999854 4332 3567776 59999999999999887 78999999999999999987775
Q ss_pred h-CCCcceeEeccCCcCccccHHHHHHHHhc---CCCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCce
Q psy6266 123 A-GFTEAREYRYWNPEKRAVDFTGMYEDLVN---APDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRI 190 (218)
Q Consensus 123 ~-g~~~~~~~~~~~~~~~~~d~~~~~~~l~~---~~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~ 190 (218)
. |+ +++.+++...+.+.+|.+.+..+++. ..++..+++.++||||||. +|.++|++|+++||+| +
T Consensus 152 ~~g~-~~v~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~D--e 228 (428)
T d1iaya_ 152 RTGV-QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCD--E 228 (428)
T ss_dssp TTCC-EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEE--C
T ss_pred hcCC-eEEEeecccccccccccccccchhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEec--c
Confidence 4 67 88888876555677888887766543 2455666777899999996 6889999999999999 9
Q ss_pred eeccCCCCC
Q psy6266 191 NMCGLTTQN 199 (218)
Q Consensus 191 ~y~~l~~~n 199 (218)
+|.++.|++
T Consensus 229 ~Y~~~~~~~ 237 (428)
T d1iaya_ 229 IYAATVFDT 237 (428)
T ss_dssp TTGGGCCSS
T ss_pred cccccccCc
Confidence 999988864
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.89 E-value=3.4e-24 Score=187.74 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=121.6
Q ss_pred ccCcCCCCcHHHHHHHHHHhcCCCCC--CCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH
Q psy6266 45 HEYLPVLGLESFSSAATRMLLGGDAS--PPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 45 ~~Y~~~~G~~~lr~aia~~~~~~~~~--~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~ 122 (218)
.+|.+..|.++||+++|+++.. ..+ ..+++++| ++|.|+++++.+++.++ ++|||+|++++|+|+.|...++.
T Consensus 78 ~~Y~~~~G~~~LR~aiA~~l~~-~~~~~~~~~pe~I--~it~G~~~al~~~~~~l--~~pGd~Vlv~~P~y~~~~~~~~~ 152 (431)
T d1m7ya_ 78 ALFQDYHGLPAFKKAMVDFMAE-IRGNKVTFDPNHL--VLTAGATSANETFIFCL--ADPGEAVLIPTPYYPGFDRDLKW 152 (431)
T ss_dssp HHCCCTTCCHHHHHHHHHHHHH-HTTTSSCCCGGGE--EEEEHHHHHHHHHHHHH--CCTTCEEEEEESCCTTHHHHTTT
T ss_pred cCCcCCcCcHHHHHHHHHHHHH-HhCCCCCCCcceE--EECCCHHHHHHHHHHHh--cCCCCEEEEeCCCchhHHHHHHH
Confidence 4699999999999999999853 322 23567776 59999999999999987 78999999999999999988875
Q ss_pred -hCCCcceeEeccCCcCccccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH--------HHHHHhhcCeEEEeeCCce
Q psy6266 123 -AGFTEAREYRYWNPEKRAVDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ--------QVAHMVDKHHVYLLRSGRI 190 (218)
Q Consensus 123 -~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~--------~l~~l~~~~~i~ii~D~r~ 190 (218)
.|+ +++.+++..++.+.+|++.+++.+.+. ..+..+++.++||||||. +|+++|++|+++||+| +
T Consensus 153 ~~g~-~~v~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~D--e 229 (431)
T d1m7ya_ 153 RTGV-EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISD--E 229 (431)
T ss_dssp TTCC-EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE--C
T ss_pred hcCc-eeccccccchhcccccHHHhhhhhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeec--c
Confidence 466 888888865556778988888877542 345567777899999996 7889999999999999 9
Q ss_pred eeccCCCCC
Q psy6266 191 NMCGLTTQN 199 (218)
Q Consensus 191 ~y~~l~~~n 199 (218)
+|..+.|++
T Consensus 230 ~Y~~~~~~~ 238 (431)
T d1m7ya_ 230 IYSGTAFSS 238 (431)
T ss_dssp TTGGGCCSS
T ss_pred cccccccCC
Confidence 999988763
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=4.2e-22 Score=168.80 Aligned_cols=163 Identities=9% Similarity=-0.027 Sum_probs=123.6
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|.++|+|++|. + ++++|+.+.+++.+.+.. ...+|.|..|.++||+++++++.. .+ +++++| ++
T Consensus 15 ~~~~~d~~~l~~~e----n-p~~~p~~i~~~~~~~~~~--~~~~~yp~~g~~~Lr~aia~~~~~-~~---v~~d~I--~i 81 (334)
T d2f8ja1 15 ETEKRDKTYLALNE----N-PFPFPEDLVDEVFRRLNS--DALRIYYDSPDEELIEKILSYLDT-DF---LSKNNV--SV 81 (334)
T ss_dssp CCCCCCSEECSSCC----C-SSCCCHHHHHHHHHHCCT--TGGGSCCCSSCHHHHHHHHHHHTC-SS---CCGGGE--EE
T ss_pred cccCCCceEEECCC----C-CCCCCHHHHHHHHHHhhc--chhcCCCCCCcHHHHHHHHHHhcc-cC---CCcceE--Ee
Confidence 34688999999994 3 367788888887776643 455677999999999999999865 54 566776 59
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
|.|++++++++++ +||+|++++|+|+.|...++..|+ +++.+|+. .+. ..+ +...+++.+++.
T Consensus 82 t~G~~~~l~~l~~------~~d~v~i~~P~y~~~~~~~~~~g~-~~v~v~~~-~~~-~~~--------~~~~~~~~~l~l 144 (334)
T d2f8ja1 82 GNGADEIIYVMML------MFDRSVFFPPTYSCYRIFAKAVGA-KFLEVPLT-KDL-RIP--------EVNVGEGDVVFI 144 (334)
T ss_dssp EEHHHHHHHHHHH------HSSEEEECSSCCHHHHHHHHHHTC-CEEECCCC-TTS-CCC--------CCCCCTTEEEEE
T ss_pred cCcchhHHHHHhh------hccccccccccccccccchhccCC-cccccccc-ccc-ccc--------ccccccceEEEe
Confidence 9999999887543 479999999999999999999999 99999873 322 111 111244556666
Q ss_pred ccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 163 ACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 163 ~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++||||||. ++.++ .++++++|.| +.|.++.+.
T Consensus 145 ~nP~NPtG~~~s~~~l~~~-~~~~~~ii~D--d~~~~~~~~ 182 (334)
T d2f8ja1 145 PNPNNPTGHVFEREEIERI-LKTGAFVALD--EAYYEFHGE 182 (334)
T ss_dssp ESSCTTTCCCCCHHHHHHH-HTTTCEEEEE--CTTGGGTCC
T ss_pred cccccccceeecHHHhhcc-ccceeEEeec--ccchhhccc
Confidence 899999998 56555 5688999999 888765443
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.83 E-value=1.1e-20 Score=160.72 Aligned_cols=164 Identities=13% Similarity=0.084 Sum_probs=124.8
Q ss_pred CceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccC
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSG 86 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~ 86 (218)
+.+|||+.|+ ++ +++++.+++|+.+...+ .++| |..|.++||+++++++ + +++++| ++|.|+
T Consensus 22 ~~~idls~~~----np-~~~p~~~~~a~~~~~~~---~~~Y-p~~~~~~Lr~aia~~~-~------v~~~~I--~~~~g~ 83 (355)
T d1lc5a_ 22 DQLLDFSANI----NP-LGMPVSVKRALIDNLDC---IERY-PDADYFHLHQALARHH-Q------VPASWI--LAGNGE 83 (355)
T ss_dssp GGSEECSSCC----CT-TCCCHHHHHHHHHTGGG---GGSC-CCTTCHHHHHHHHHHH-T------SCGGGE--EEESSH
T ss_pred hheEEccCCC----CC-CCCCHHHHHHHHHHHHH---hccC-CCCChHHHHHHHHHHh-C------CCHHHE--EecccH
Confidence 3789999995 22 44688899888776643 4568 6678899999999987 4 455665 588999
Q ss_pred hhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCC
Q psy6266 87 TGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAH 166 (218)
Q Consensus 87 ~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~ 166 (218)
++++.+++.++ .++.++++.|+|+.|.......++ .++.+++...+.+.++ +.+.+.+ .+++.+++.++||
T Consensus 84 ~~~~~~~~~~~----~~~~~~v~~p~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~-~~~~~~~---~~~~~~v~l~nP~ 154 (355)
T d1lc5a_ 84 TESIFTVASGL----KPRRAMIVTPGFAEYGRALAQSGC-EIRRWSLREADGWQLT-DAILEAL---TPDLDCLFLCTPN 154 (355)
T ss_dssp HHHHHHHHHHH----CCSEEEEEESCCTHHHHHHHHTTC-EEEEEECCGGGTTCCC-TTHHHHC---CTTCCEEEEESSC
T ss_pred HHHHHHHHhhh----ccccccccCCccceeccccccccc-cceeeeeeccCCccce-eeeeecc---ccccceeeeeccc
Confidence 99888776644 578888999999999999999999 8999998544444444 3344433 2344445557899
Q ss_pred CCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 167 NPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 167 NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
||||. +|+++|++|++++|.| ++|.++.+..
T Consensus 155 NPtG~~~~~e~l~~i~~~a~~~~~~li~D--e~y~~~~~~~ 193 (355)
T d1lc5a_ 155 NPTGLLPERPLLQAIADRCKSLNINLILD--EAFIDFIPHE 193 (355)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEE--CTTGGGSTTC
T ss_pred Ccccccchhhhhhhhhhhccccccccccc--cceeeeeeec
Confidence 99997 7889999999999999 9999876653
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=1.7e-18 Score=147.10 Aligned_cols=157 Identities=14% Similarity=0.164 Sum_probs=113.4
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEecc
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLS 85 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G 85 (218)
|+..|.|+.+. .+ +.+++.+.+ ...++| |..+..+||+++++++ + +++++| ++|.|
T Consensus 26 ~~~~i~L~~ne----~p-~~~~~~~~~---------~~l~rY-Pd~~~~~Lr~~ia~~~-g------v~pe~I--~it~G 81 (354)
T d1fg7a_ 26 GNGDVWLNANE----YP-TAVEFQLTQ---------QTLNRY-PECQPKAVIENYAQYA-G------VKPEQV--LVSRG 81 (354)
T ss_dssp TTCSEECSSCC----CS-SCCCCCCCC---------CCTTSC-CCSSCHHHHHHHHHHH-T------SCGGGE--EEESH
T ss_pred CCCCEEeeCCC----CC-CCCCHHHHH---------HHHhcC-CCCcHHHHHHHHHHHh-C------CChHHe--eeccC
Confidence 45678888874 22 222322221 234678 5556789999999987 4 567776 59999
Q ss_pred ChhHHHHHHHHHHHhcCCC-eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 86 GTGALRVGAEFLHRILNYT-TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 86 ~~~al~~~~~~l~~l~~gd-~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
+++++.++++++ ++||| .|++++|+|+.|...++..|. +++.++. .+.+.+|++.+...+ +++.+++.++
T Consensus 82 s~eai~~~~~~~--~~pgd~~Vl~~~P~y~~~~~~~~~~g~-~v~~~~~--~~~~~~d~~~l~~~~----~~~~~v~~~~ 152 (354)
T d1fg7a_ 82 ADEGIELLIRAF--CEPGKDAILYCPPTYGMYSVSAETIGV-ECRTVPT--LDNWQLDLQGISDKL----DGVKVVYVCS 152 (354)
T ss_dssp HHHHHHHHHHHH--CCTTTCEEEECSSSCTHHHHHHHHHTC-EEEECCC--CTTSCCCHHHHHTSC----TTEEEEEEES
T ss_pred chHHHHHHHHHh--hccccccccccccccccchhhhhccCc-eeecccc--ccccccchhhhhhcc----cccceeeccC
Confidence 999999999987 68998 588899999999999999999 8888876 345788988876544 3456677789
Q ss_pred CCCCcHH--------HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 165 AHNPTAQ--------QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 165 p~NPTG~--------~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
||||||. .+.+.+++ +.+++.| +.|.++.++
T Consensus 153 pnNPtG~~~~~~~~~~~~~~~~~-~~~~iid--d~~~~f~~~ 191 (354)
T d1fg7a_ 153 PNNPTGQLINPQDFRTLLELTRG-KAIVVAD--EAYIEFCPQ 191 (354)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHTT-TCEEEEE--CTTGGGSGG
T ss_pred CCccceeEeeecccccccccccc-ccccccc--ccchhhccc
Confidence 9999997 35555554 4555555 566666543
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.63 E-value=2.7e-17 Score=143.66 Aligned_cols=167 Identities=7% Similarity=-0.131 Sum_probs=110.8
Q ss_pred CceeeeeeeEEeCCCCCccCchH-HH-HHHHHHhhcCC-CCccCcCCCCc----HHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 7 EIHCCEIRNAYRTEECKPWVLPV-VR-QAEKELAADDS-LNHEYLPVLGL----ESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 7 ~~~i~l~iG~~~~~~~~~~~~~~-v~-~a~~~~~~~~~-~~~~Y~~~~G~----~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
.-++|+..|. +.+ ++. -+ .+...+.-..+ ....|+-..+. ++|+++|+++... .++. ..+++-
T Consensus 56 ~~~~~~~~gd-----p~~--~~~~w~~~~~~~~~~~~~~~~~sy~~~~~~~~~~~~L~~~i~~lh~~-~gna-~t~~~~- 125 (425)
T d2hoxa1 56 GCSADVASGD-----GLF--LEEYWKQHKEASAVLVSPWHRMSYFFNPVSNFISFELEKTIKELHEV-VGNA-AAKDRY- 125 (425)
T ss_dssp TCCEECCSCC-----CGG--GHHHHTTSHHHHCEEECTTTTCSSSCSSCCTTCCHHHHHHHHHHHHH-HTCB-CCTTCE-
T ss_pred CceeeCCCCC-----CCC--CCHHHHhCcccceEEeecccccceecCCccccCCHHHHHHHHHHHhh-hCCC-CCCCCE-
Confidence 4578888883 322 333 22 22222221112 13357665442 8999999998743 3333 334442
Q ss_pred EEEeccChhHHHHHHHHHHH------hcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC
Q psy6266 80 GVQTLSGTGALRVGAEFLHR------ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA 153 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~------l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~ 153 (218)
+++++|+++++.+++.+|.. ++|||+|+++.|+|+.|..+.+.++. +...+. +|.+.+++++
T Consensus 126 IvvG~Gsteli~~~~~AL~~~~~~~~~~pg~~Vv~~~P~y~~Y~~~~~~~~~-~~~~~~--------~D~~~~~~~~--- 193 (425)
T d2hoxa1 126 IVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQTKYFDK-KGYVWA--------GNAANYVNVS--- 193 (425)
T ss_dssp EEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHHHHHSCB-TTEEEE--------EEGGGGTTCS---
T ss_pred EEECCCHHHHHHHHHHHhccccccccCCCCCEEEEecCccccHHHHHHHcCC-CCCccC--------CCHHHHHhhC---
Confidence 46999999999999988731 46899999999999999999999988 665553 3444444333
Q ss_pred CCCcEEEEcccCCCCcHHHHHHHhhcCeEEEeeCCceeeccCCCCC
Q psy6266 154 PDNSVIILHACAHNPTAQQVAHMVDKHHVYLLRSGRINMCGLTTQN 199 (218)
Q Consensus 154 ~~~~~iil~~~p~NPTG~~l~~l~~~~~i~ii~D~r~~y~~l~~~n 199 (218)
++++.+++++|||||||.- .-+..+++++|.| |+|.+..|..
T Consensus 194 ~~~~~ii~l~sPnNPtG~l--~~~v~~~~~~I~D--EaY~~~~f~~ 235 (425)
T d2hoxa1 194 NPEQYIEMVTSPNNPEGLL--RHAVIKGCKSIYD--MVYYWPHYTP 235 (425)
T ss_dssp CGGGEEEEEESSCTTTCCC--CCCSSTTCEEEEE--CTTCSTTTSC
T ss_pred CCCceEEEEECCCCCCcch--hhhhhhCCEEEEe--ccccCccccc
Confidence 3567778889999999972 1234578999999 9997655543
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.60 E-value=1.8e-15 Score=127.54 Aligned_cols=124 Identities=12% Similarity=0.024 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEec
Q psy6266 54 ESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRY 133 (218)
Q Consensus 54 ~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~ 133 (218)
..+++.+|+++ + . +.+ ++|+|+++|+.++++++ ++|||+|++++|+|++....++..|+ +++.+|.
T Consensus 50 ~~~~~~~A~~~-g-~-------e~~--~~t~g~t~a~~~~~~al--~~~gd~Vi~~~~~h~s~~~~~~~~g~-~v~~v~~ 115 (364)
T d2e7ja1 50 DFIHNQLPKFL-G-C-------DVA--RVTNGAREAKFAVMHSL--AKKDAWVVMDENCHYSSYVAAERAGL-NIALVPK 115 (364)
T ss_dssp HHHHTHHHHHT-T-S-------SEE--EEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHHTTC-EEEEECC
T ss_pred HHHHHHHHHHh-C-c-------CEE--EEECcHHHHHHHHHHHH--hCCCcEEEeecccccccchHHHhccc-eEEEeee
Confidence 45677787765 3 1 333 58999999999999887 78999999999999887778889999 9999987
Q ss_pred cCCcCccccHHHHHHHHhcCC--CCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 134 WNPEKRAVDFTGMYEDLVNAP--DNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 134 ~~~~~~~~d~~~~~~~l~~~~--~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.....+.+|++.+++.+++.+ .+..+++.++|+||||. +|.++|++|+++++.| ++|+
T Consensus 116 ~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~l~~I~~ia~~~~i~livD--~a~~ 180 (364)
T d2e7ja1 116 TDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVN--GAYA 180 (364)
T ss_dssp CCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEE--CTTT
T ss_pred ccccccccCHHHHHhhhhhhcccCCceEEEeecCCCCCceeecchhheeccccccchhhcc--ccch
Confidence 544456789999999997542 23455556789999998 8999999999999999 7875
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=3.2e-14 Score=121.60 Aligned_cols=154 Identities=11% Similarity=0.061 Sum_probs=116.8
Q ss_pred EEeCCCCCccCchHHHHHHHHHhhcCCCCccCc-CCCC-----------cHHHHHHHHHHhcCCCCCCCcCCCceEEEEe
Q psy6266 16 AYRTEECKPWVLPVVRQAEKELAADDSLNHEYL-PVLG-----------LESFSSAATRMLLGGDASPPLREGRAFGVQT 83 (218)
Q Consensus 16 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~-~~~G-----------~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t 83 (218)
+|-|..+.-++++.|.+|+.+.... ...|. |..+ +++.|+.+++++. .++++| +.|
T Consensus 4 iYlD~aa~~p~~~~v~ea~~~~~~~---~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg-------~~~~~I--~~~ 71 (391)
T d1p3wa_ 4 IYLDYSATTPVDPRVAEKMMQFMTM---DGTFGNPASRSHRFGWQAEEAVDIARNQIADLVG-------ADPREI--VFT 71 (391)
T ss_dssp EECBTTTCCCCCHHHHHHHHTTTST---TSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHT-------CCGGGE--EEE
T ss_pred EEeeCccccCCCHHHHHHHHHHHHh---ccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcC-------CCCCcE--EEE
Confidence 3556666668899999998887643 22333 3222 3467888888773 344565 589
Q ss_pred ccChhHHHHHHHHHHH--hcCCCeEEecCCCchhHHHHHH---HhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcE
Q psy6266 84 LSGTGALRVGAEFLHR--ILNYTTFYYSKPTWENHRLVFL---NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSV 158 (218)
Q Consensus 84 ~G~~~al~~~~~~l~~--l~~gd~V~i~~P~y~~y~~~~~---~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~ 158 (218)
.|+++++..+++++.. +.+||+|++.++.|+++...++ ..|+ +++.++.. +...+|++.+++++. +++.
T Consensus 72 ~~~t~~l~~~~~~~~~~~~~~gd~Vv~~~~~~~s~~~~~~~~~~~G~-~v~~v~~~--~~~~~d~~~~~~~i~---~~T~ 145 (391)
T d1p3wa_ 72 SGATESDNLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF-EVTYLAPQ--RNGIIDLKELEAAMR---DDTI 145 (391)
T ss_dssp SSHHHHHHHHHHHHHHHHGGGCCEEEEETTSCHHHHHHHHHHHHTTC-EEEEECCC--TTSCCCHHHHHHHCC---TTEE
T ss_pred CCHHHHHHHHHhhhhhhhcCCCCEEEEeccccchHHHHHHHHHHcCC-EEEEeCCC--CCCeEcHHHHHHhCC---CCcE
Confidence 9999999888776432 5689999999999999876654 3488 88888763 335679999988884 5677
Q ss_pred EEEcccCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 159 IILHACAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 159 iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
+++.+.++||||. +|.+++++|+++++.|
T Consensus 146 lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD 179 (391)
T d1p3wa_ 146 LVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVD 179 (391)
T ss_dssp EEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCCeeECCHHHHHHHhccCCcEEEEe
Confidence 8888899999998 8999999999999999
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.40 E-value=1.8e-13 Score=116.54 Aligned_cols=148 Identities=8% Similarity=-0.050 Sum_probs=104.3
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccCh
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGT 87 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~ 87 (218)
.++|++-. .++++..+...++ .. ..|.+..|.++++++.++++.+ . ..+. +++|.|++
T Consensus 21 ~i~~~~gl-----~~~~~~~~~~~~~----~~-----~~~~~~~~~~~l~~~~~~~~~~-~-----~~e~--~~~~~~~~ 78 (366)
T d2aeua1 21 ALYDLSGL-----SGGFLIDEKDKAL----LN-----TYIGSSYFAEKVNEYGLKHLGG-D-----ENDK--CVGFNRTS 78 (366)
T ss_dssp GCEECSSC-----CCCCCCCHHHHHH----HT-----STTHHHHHHHHHHHHHHHHHTC-C-----TTEE--EEEESSHH
T ss_pred hHhhhccC-----CCCCCccHHHHHH----HH-----HhcCchhhHHHHHHHHHHHccC-C-----CccE--EEEeCCHH
Confidence 46677543 3345555544432 21 1244556789999998888754 2 2233 46899999
Q ss_pred hHHHHHHHHHHHhcCCCeEEe-c-CCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 88 GALRVGAEFLHRILNYTTFYY-S-KPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 88 ~al~~~~~~l~~l~~gd~V~i-~-~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
+|+..++.++ .|+|+|++ + .|+|++|...++..|+ +++.. -|++.+++.+ ++++++++.++|
T Consensus 79 ~a~~~~l~al---~~~~~vi~~~~~~~~~~~~~~~~l~g~-~~v~~---------~d~e~l~~~i---~~~tk~i~~~~p 142 (366)
T d2aeua1 79 SAILATILAL---KPKKVIHYLPELPGHPSIERSCKIVNA-KYFES---------DKVGEILNKI---DKDTLVIITGST 142 (366)
T ss_dssp HHHHHHHHHH---CCSEEEEECSSSSCCTHHHHHHHHTTC-EEEEE---------SCHHHHHTTC---CTTEEEEEECBC
T ss_pred HHHHHHHHHh---CCCCEEEEecCCCcchhHHHHHHhcCC-eEECC---------CCHHHHHHhc---CCCceEEEEEec
Confidence 9998887665 57787755 3 5899999999999998 65432 1566666655 466777777899
Q ss_pred CCCcHH------HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 166 HNPTAQ------QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 166 ~NPTG~------~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+||++. +|+++|++|++++++| ++|...
T Consensus 143 ~n~~~~~~~~l~~i~~ia~~~~~~~i~D--e~y~~~ 176 (366)
T d2aeua1 143 MDLKVIELENFKKVINTAKNKEAIVFVD--DASGAR 176 (366)
T ss_dssp TTSCBCCHHHHHHHHHHHHHHTCCEEEE--CTTHHH
T ss_pred CCCCcCCHHHHHHHHHHhccCcEEEEEe--cCcccc
Confidence 998653 7899999999999999 888754
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.22 E-value=1.4e-11 Score=104.13 Aligned_cols=145 Identities=12% Similarity=0.048 Sum_probs=107.5
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcC
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILN 102 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~ 102 (218)
+|...+.-.++..++++. + .|+.-....+|.+.+++++.. + . ++.|.+|+.|+.++++++. +.+
T Consensus 7 ~~~~~~~~~~~~~~~~~~--~--~~~~G~~v~~~E~~la~~~g~-~--------~--ai~~~sgt~Al~~al~al~-~~~ 70 (376)
T d1mdoa_ 7 RPAMGAEELAAVKTVLDS--G--WITTGPKNQELEAAFCRLTGN-Q--------Y--AVAVSSATAGMHIALMALG-IGE 70 (376)
T ss_dssp CCCCCHHHHHHHHHHHHH--T--CCSSSHHHHHHHHHHHHHHCC-S--------E--EEEESCHHHHHHHHHHHTT-CCT
T ss_pred CCCCCHHHHHHHHHHHhc--C--CCcCCHHHHHHHHHHHHHHCc-C--------e--EEEeCCHHHHHHHHHHHhC-CCC
Confidence 344555556666676654 2 344433478999999988743 2 1 3466777999999988763 579
Q ss_pred CCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE-cccCCCCcHH-HHHHHhhcC
Q psy6266 103 YTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL-HACAHNPTAQ-QVAHMVDKH 180 (218)
Q Consensus 103 gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil-~~~p~NPTG~-~l~~l~~~~ 180 (218)
||+|++|+.+|++....+..+|+ +|+.+.. +.+.+.+|++.+++.+. +++.+++ .+...+|.-. +|.++|+++
T Consensus 71 gdeVi~~~~~~~~~~~ai~~~g~-~pv~~d~-~~~~~~~d~~~l~~~i~---~~tkaIi~~h~~G~~~~~~~i~~i~~~~ 145 (376)
T d1mdoa_ 71 GDEVITPSMTWVSTLNMIVLLGA-NPVMVDV-DRDTLMVTPEHIEAAIT---PQTKAIIPVHYAGAPADLDAIYALGERY 145 (376)
T ss_dssp TCEEEEESSSCHHHHHHHHHTTC-EEEEECB-CTTTCCBCHHHHHHHCC---TTEEEECCBCGGGCCCCHHHHHHHHHHH
T ss_pred CCEEEEecccccccccchhcccc-ceeeecc-cccccCCCHHHHHHhcC---CCCeEEEEeCCCCCccchhHHHHHHHhc
Confidence 99999999999999999999999 9999987 35567889999999885 3444443 3333344444 799999999
Q ss_pred eEEEeeCC
Q psy6266 181 HVYLLRSG 188 (218)
Q Consensus 181 ~i~ii~D~ 188 (218)
++++|+|.
T Consensus 146 ~i~vIeD~ 153 (376)
T d1mdoa_ 146 GIPVIEDA 153 (376)
T ss_dssp TCCBCEEC
T ss_pred CceEEecc
Confidence 99999994
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=99.17 E-value=1.4e-11 Score=104.34 Aligned_cols=157 Identities=11% Similarity=-0.005 Sum_probs=99.7
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcC--CCCccCcCCCC----cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADD--SLNHEYLPVLG----LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGAL 90 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al 90 (218)
|-|..+--+.|..|.+|+.+..++. .....|..... +.++|+.+++++ + .++++| +.|.|+++++
T Consensus 10 yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~-~------~~~~~i--~~~~g~t~a~ 80 (381)
T d1elua_ 10 YFNFGGQGILPTVALEAITAMYGYLQENGPFSIAANQHIQQLIAQLRQALAETF-N------VDPNTI--TITDNVTTGC 80 (381)
T ss_dssp ECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHHHHHHT-T------SCGGGE--EEESSHHHHH
T ss_pred EeeCCcccCCCHHHHHHHHHHHHHhhcCCCccchhhHHHHHHHHHHHHHHHHHh-C------CCcccE--EEECChHHHh
Confidence 3333333366778888876655320 01111222222 345777777665 3 345665 4899999999
Q ss_pred HHHHHHHHHhcCCCeEEecCCCchhHHH----HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCCcEEEEcccC
Q psy6266 91 RVGAEFLHRILNYTTFYYSKPTWENHRL----VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDNSVIILHACA 165 (218)
Q Consensus 91 ~~~~~~l~~l~~gd~V~i~~P~y~~y~~----~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~~iil~~~p 165 (218)
.+++.++. +.+||+|+++++.|++... +.+..|+ +++.+|.... ....+ ..+.+++. ++++.+++...+
T Consensus 81 ~~~~~~l~-~~~g~~i~~~~~~~~s~~~~~~~~~~~~g~-~~~~v~~~~~-~~~~~---~~~~l~~~i~~~t~~v~i~~~ 154 (381)
T d1elua_ 81 DIVLWGLD-WHQGDEILLTDCEHPGIIAIVQAIAARFGI-TYRFFPVAAT-LNQGD---AAAVLANHLGPKTRLVILSHL 154 (381)
T ss_dssp HHHHHHSC-CCTTCEEEEETTCCHHHHHHHHHHHHHHCC-EEEEECCGGG-SSSSC---HHHHHHTTCCTTEEEEEEESB
T ss_pred hhcchhhh-hcCCceEEEeccccceeeeccccccccccc-cccccccccc-cccch---HHHHHHhhhcccccccccccc
Confidence 99887652 5689999999999987544 3444688 8888875321 11112 22333332 456777777889
Q ss_pred CCCcHH-----HHHHHhhcC----eEEEeeCC
Q psy6266 166 HNPTAQ-----QVAHMVDKH----HVYLLRSG 188 (218)
Q Consensus 166 ~NPTG~-----~l~~l~~~~----~i~ii~D~ 188 (218)
+||||. +|.++|++| +++++.|+
T Consensus 155 ~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~ 186 (381)
T d1elua_ 155 LWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDG 186 (381)
T ss_dssp CTTTCCBCCHHHHHHHHHHCCSSSCCEEEEEC
T ss_pred cccccccchhhHHHHHHhhccccccccccccc
Confidence 999998 788999874 69999994
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=98.95 E-value=7.6e-09 Score=86.98 Aligned_cols=157 Identities=11% Similarity=0.056 Sum_probs=108.7
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCCC-cc-CcC----CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSLN-HE-YLP----VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGAL 90 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~-Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al 90 (218)
|-|..+--++|+.|.+|..+..++...+ ++ |.. ..-+.+.|+.+++++ + .++++| +.+.|+|+++
T Consensus 4 yld~a~~~~~p~~v~ea~~~~~~~~~~np~~~~~~~~~~~~~~~~aR~~ia~l~-~------~~~~~i--~~~~~~T~~l 74 (376)
T d1eg5a_ 4 YFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGMGIEANLHMEKAREKVAKVL-G------VSPSEI--FFTSCATESI 74 (376)
T ss_dssp ECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCSSHHHHHHHHHHHHHHHHHHHHH-T------SCGGGE--EEESCHHHHH
T ss_pred EEECcccccCCHHHHHHHHHHHHHcCCCCccccHHHHHHHHHHHHHHHHHHHHc-C------CCCCcE--EEECCHHHHH
Confidence 4455555578999999988777541000 10 100 011345678888766 3 345665 5889999999
Q ss_pred HHHHHHHH--HhcCCCeEEecCCCchhHHHHHHHh---CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccC
Q psy6266 91 RVGAEFLH--RILNYTTFYYSKPTWENHRLVFLNA---GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACA 165 (218)
Q Consensus 91 ~~~~~~l~--~l~~gd~V~i~~P~y~~y~~~~~~~---g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p 165 (218)
..++..+. .+.+|+.|+++...++.+....+.+ |+ +++.+|.. +...+|.+.+.+.+. +++.++..+.+
T Consensus 75 ~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~g~-~v~~vp~~--~~~~id~~~l~~~i~---~~t~lv~is~v 148 (376)
T d1eg5a_ 75 NWILKTVAETFEKRKRTIITTPIEHKAVLETMKYLSMKGF-KVKYVPVD--SRGVVKLEELEKLVD---EDTFLVSIMAA 148 (376)
T ss_dssp HHHHHHHHHHTTTTCCEEEECTTSCHHHHHHHHHHHHTTC-EEEECCBC--TTSCBCHHHHHHHCC---TTEEEEEEESB
T ss_pred HhhhhcccccccccCcccccccccchhhHHHHHHHHhcCC-EEEEEcCC--CCCeECHHHHHHhcC---CCceEEEEECC
Confidence 98876432 2467999999999999988766544 88 88888873 245789999998884 56777777889
Q ss_pred CCCcHH-----HHHHHh--hcCeEEEeeCC
Q psy6266 166 HNPTAQ-----QVAHMV--DKHHVYLLRSG 188 (218)
Q Consensus 166 ~NPTG~-----~l~~l~--~~~~i~ii~D~ 188 (218)
+|+||. ++.+++ .+.++.++.|+
T Consensus 149 ~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~ 178 (376)
T d1eg5a_ 149 NNEVGTIQPVEDVTRIVKKKNKETLVHVDA 178 (376)
T ss_dssp CTTTCBBCCHHHHHHHHHHHCTTCEEEEEC
T ss_pred ccccceeeeehhhhhhhhhcccCceeEEEe
Confidence 999996 566665 44578888884
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=98.94 E-value=1.8e-09 Score=91.98 Aligned_cols=141 Identities=12% Similarity=0.011 Sum_probs=100.4
Q ss_pred HHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEe
Q psy6266 29 VVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYY 108 (218)
Q Consensus 29 ~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i 108 (218)
.-.++..++++. +..-++.-.=..+|-+.++++.-. + . ++.|..|+.|+.++++++. +.+||+|++
T Consensus 14 ~~~~~~~~~l~~--g~~~~~~g~~v~~fE~~~a~~~g~-~--------~--~v~~~SGt~Al~lal~~l~-~~~gdeVi~ 79 (384)
T d1b9ha_ 14 AERNGLVRALEQ--GQWWRMGGDEVNSFEREFAAHHGA-A--------H--ALAVTNGTHALELALQVMG-VGPGTEVIV 79 (384)
T ss_dssp HHHHHHHHHHHT--SCCBTTTCSHHHHHHHHHHHHTTC-S--------E--EEEESCHHHHHHHHHHHTT-CCTTCEEEE
T ss_pred HHHHHHHHHHHc--CCeeecCCHHHHHHHHHHHHHHCc-C--------e--EEEeCCHHHHHHHHHHHcC-CCCCCEEEE
Confidence 344555666643 221122222357888888876643 2 2 3578889999999998763 679999999
Q ss_pred cCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE-cccCCCCcHH-HHHHHhhcCeEEEee
Q psy6266 109 SKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL-HACAHNPTAQ-QVAHMVDKHHVYLLR 186 (218)
Q Consensus 109 ~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil-~~~p~NPTG~-~l~~l~~~~~i~ii~ 186 (218)
|+-+|+.....+..+|+ +|+.++.. ++.+.+|++.+++.+. +++.+++ .+...+|-.. .+.++|+++++++|+
T Consensus 80 p~~t~~a~~~ai~~~g~-~p~~~d~~-~~~~~~d~~~~~~~i~---~~tk~i~~~~~~g~~~d~~~i~~~~~~~~i~lie 154 (384)
T d1b9ha_ 80 PAFTFISSSQAAQRLGA-VTVPVDVD-AATYNLDPEAVAAAVT---PRTKVIMPVHMAGLMADMDALAKISADTGVPLLQ 154 (384)
T ss_dssp ESSSCTHHHHHHHHTTC-EEEEECBC-TTTCCBCHHHHHHHCC---TTEEEECCBCGGGCCCCHHHHHHHHHHHTCCBCE
T ss_pred ecccccccccccccccc-cccccccc-ccccccchhhhccccc---ccccccccccccccccccccchhhhhhhhhhhhh
Confidence 99999999999999999 99998873 5567789999988774 4444443 2333333333 899999999999999
Q ss_pred CC
Q psy6266 187 SG 188 (218)
Q Consensus 187 D~ 188 (218)
|-
T Consensus 155 D~ 156 (384)
T d1b9ha_ 155 DA 156 (384)
T ss_dssp EC
T ss_pred hh
Confidence 94
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=98.90 E-value=4.7e-09 Score=88.48 Aligned_cols=122 Identities=9% Similarity=-0.027 Sum_probs=89.0
Q ss_pred cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEe
Q psy6266 53 LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYR 132 (218)
Q Consensus 53 ~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~ 132 (218)
...|-+.+++++.. + -++.+.+||.|+.++++++. +.+||+|++|+=+|+.-...+..+|+ +|+.+.
T Consensus 23 ~~~fE~~~~~~~~~-~----------~~~~~~SgT~Al~lal~~l~-~~~gdeVi~p~~t~~a~~~~~~~~g~-~pv~~D 89 (374)
T d1o69a_ 23 VNRFEQSVKDYSKS-E----------NALALNSATAALHLALRVAG-VKQDDIVLASSFTFIASVAPICYLKA-KPVFID 89 (374)
T ss_dssp HHHHHHHHHHHHCC-S----------EEEEESCHHHHHHHHHHHTT-CCTTCEEEEESSSCGGGTHHHHHTTC-EEEEEC
T ss_pred HHHHHHHHHHHHCc-C----------eEEEeCCHHHHHHHHHHHcC-CCCcCEEEeCCcchHhhHHHHhhccc-eeEecc
Confidence 68888888887643 2 14578889999999998764 67899999999999999999999999 999997
Q ss_pred ccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-HHHHHhhcCeEEEeeCC
Q psy6266 133 YWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 133 ~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-~l~~l~~~~~i~ii~D~ 188 (218)
.. ++....+.+.........+....+++.....+|... ++.++|+++++.||+|-
T Consensus 90 i~-~~~~~~~~~~~~~~~~~~~~~~aii~~~~~G~~~d~~~i~~~~~~~~i~vIED~ 145 (374)
T d1o69a_ 90 CD-ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENDIVLIEDA 145 (374)
T ss_dssp BC-TTSSBCHHHHHHHHHHCSSCCCEEEEECGGGCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred cc-cccccccccccccchhcccccccccccccccchhhhHHHHHHhhccCcchhhhh
Confidence 63 333333444333222221222344555566777666 89999999999999994
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.90 E-value=5.7e-10 Score=91.06 Aligned_cols=149 Identities=10% Similarity=0.003 Sum_probs=102.1
Q ss_pred chHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeE
Q psy6266 27 LPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTF 106 (218)
Q Consensus 27 ~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V 106 (218)
.|.|++|+.++.. +...|.+.....+|++.+++++ | . +. ++.++||++|..+++.++ ..+||.+
T Consensus 13 ~p~v~~A~~~a~~---g~~~yg~~p~~~~le~~lA~~~-G-~-------~~--~~~~~sGt~A~~~al~a~--~~~g~~~ 76 (343)
T d1m6sa_ 13 TEEMRKAMAQAEV---GDDVYGEDPTINELERLAAETF-G-K-------EA--ALFVPSGTMGNQVSIMAH--TQRGDEV 76 (343)
T ss_dssp CHHHHHHHHTCCC---CCGGGTCCHHHHHHHHHHHHHT-T-C-------SE--EEEESCHHHHHHHHHHHH--CCTTCEE
T ss_pred CHHHHHHHHhhhc---CCcccCCCHHHHHHHHHHHHHH-C-C-------Ce--EEEeCCHHHHHHHHHHHH--hccCCce
Confidence 5678888765432 3567998889999999999875 4 2 22 357788999988888776 5689999
Q ss_pred EecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCC---CCc-EEEEcccCCCCcHH--------HHH
Q psy6266 107 YYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP---DNS-VIILHACAHNPTAQ--------QVA 174 (218)
Q Consensus 107 ~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~~-~iil~~~p~NPTG~--------~l~ 174 (218)
++..+.+..+.......++......+. .......|++.+.+.+...+ ++. .+++...++||.|. +|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~ 155 (343)
T d1m6sa_ 77 ILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEIC 155 (343)
T ss_dssp EEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHH
T ss_pred eccccccceeeecccccccccceeecc-ccccCccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHH
Confidence 999999887654333332212333333 23344568999888886532 222 34444566777663 688
Q ss_pred HHhhcCeEEEeeCCceeecc
Q psy6266 175 HMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 175 ~l~~~~~i~ii~D~r~~y~~ 194 (218)
++|++++++++.| +++.+
T Consensus 156 ~~~~~~g~~~~~D--~a~~~ 173 (343)
T d1m6sa_ 156 TIAKEHGINVHID--GARIF 173 (343)
T ss_dssp HHHHHHTCEEEEE--ETTHH
T ss_pred HHHHhcCeEEEec--ccccc
Confidence 8889999999999 77654
|
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=98.75 E-value=8.6e-08 Score=81.64 Aligned_cols=158 Identities=13% Similarity=0.104 Sum_probs=109.9
Q ss_pred EeCCCCCccCchHHHHHHHHHhhcCCCC-ccCcCC------CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhH
Q psy6266 17 YRTEECKPWVLPVVRQAEKELAADDSLN-HEYLPV------LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGA 89 (218)
Q Consensus 17 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~-~~Y~~~------~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~a 89 (218)
|-|..+--++|+.|.++..+..++...+ ++-... .=+++.|+.+++++.. -.+++| +.|.++|++
T Consensus 25 Yld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l~~------~~~~~i--~~~~~~T~~ 96 (405)
T d1jf9a_ 25 YLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFINA------RSAEEL--VFVRGTTEG 96 (405)
T ss_dssp ECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHTTC------SCGGGE--EEESSHHHH
T ss_pred EEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHcCC------CCcccc--cccCcHHHH
Confidence 5455555578999999987766431111 100001 1156678888887643 223444 488999999
Q ss_pred HHHHHHHHH--HhcCCCeEEecCCCchhHHHHH----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcc
Q psy6266 90 LRVGAEFLH--RILNYTTFYYSKPTWENHRLVF----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHA 163 (218)
Q Consensus 90 l~~~~~~l~--~l~~gd~V~i~~P~y~~y~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~ 163 (218)
+..+++.+. .+.+||+|++.+--|++-...+ +..|+ +++.+|.. + ...+|.+.+++.+. +++.++...
T Consensus 97 ~~~~~~~~~~~~~~~g~~il~~~~e~~s~~~~~~~~a~~~g~-~v~~~~~~-~-~g~~~~~~~~~~i~---~~t~lv~~~ 170 (405)
T d1jf9a_ 97 INLVANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGA-ELRVIPLN-P-DGTLQLETLPTLFD---EKTRLLAIT 170 (405)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTC-EEEEECBC-T-TSCBCGGGHHHHCC---TTEEEEEEE
T ss_pred HHHHHhcccccccCCCCEEEEEeCcccchHHHHHHHHHHcCc-EEEEECCC-C-CCcCCHHHHHHhcc---CCcEEEEEe
Confidence 987776532 2568999999999999854433 45688 89998873 3 34678888877664 567777777
Q ss_pred cCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 164 CAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 164 ~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
..+|.||. +|.++|++++++++.|+
T Consensus 171 ~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~ 200 (405)
T d1jf9a_ 171 HVSNVLGTENPLAEMITLAHQHGAKVLVDG 200 (405)
T ss_dssp SBCTTTCCBCCHHHHHHHHHHTTCEEEEEC
T ss_pred cCCCcccccCchHHhhhHHHHcCCeeeccc
Confidence 88999997 89999999999999994
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=98.74 E-value=1.5e-08 Score=81.07 Aligned_cols=152 Identities=7% Similarity=-0.026 Sum_probs=97.8
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCC
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYT 104 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd 104 (218)
.+.|.|.+|+.+...+ ..+.|.+..+.+++|+.+++++-. .+++| +.|.|+++|..++++.+ ..+++
T Consensus 11 g~~P~v~eAl~~~~~~--~~~~y~~~~~~~~lr~~ia~~~g~-------~~~~v--~~tsggtean~~a~~~~--~~~~~ 77 (340)
T d1svva_ 11 GMHPKILDLMARDNMT--QHAGYGQDSHCAKAARLIGELLER-------PDADV--HFISGGTQTNLIACSLA--LRPWE 77 (340)
T ss_dssp CCCHHHHHHHHHHTTC--CCCSTTCSHHHHHHHHHHHHHHTC-------TTSEE--EEESCHHHHHHHHHHHH--CCTTE
T ss_pred CCCHHHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHHHhCC-------CcceE--EEcCCHHHHHHHHHHHH--hhhcc
Confidence 3467899998876543 456798889999999999988732 23444 58999999998888766 67899
Q ss_pred eEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC----CCCcEEEEcccCCCCcHH-------HH
Q psy6266 105 TFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA----PDNSVIILHACAHNPTAQ-------QV 173 (218)
Q Consensus 105 ~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~----~~~~~iil~~~p~NPTG~-------~l 173 (218)
+++++.+.+..+.......+. .......... ....+.....+..... .++..+++...++|+++. .+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (340)
T d1svva_ 78 AVIATQLGHISTHETGAIEAT-GHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDI 155 (340)
T ss_dssp EEEEETTSHHHHSSTTHHHHT-TCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCCCHHHHHHH
T ss_pred ccccccccceeeeeccccccc-ceeeeecccc-cccccchhHHHHhhhhhcccCCcceeeeecccccccccccHHHhhhh
Confidence 999999998887643333333 3333333212 2223333333333221 223344444455555443 56
Q ss_pred HHHhhcCeEEEeeCCceeec
Q psy6266 174 AHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~r~~y~ 193 (218)
.+.+.+++.+++.| +++.
T Consensus 156 ~~~~~~~g~~~~~d--~a~~ 173 (340)
T d1svva_ 156 SASCKEHGLYLFLD--GARL 173 (340)
T ss_dssp HHHHHHHTCEEEEE--CTTH
T ss_pred hcccccccceeeee--ccce
Confidence 77888899999999 5554
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.69 E-value=1.8e-08 Score=86.57 Aligned_cols=112 Identities=10% Similarity=0.036 Sum_probs=85.7
Q ss_pred EEEeccChhHHH-HHHHHHHH-hcCCCeEEecCCCchhHHHHHHHhCCCcceeEec-cCCcCccccHHHHHHHHhcC-CC
Q psy6266 80 GVQTLSGTGALR-VGAEFLHR-ILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRY-WNPEKRAVDFTGMYEDLVNA-PD 155 (218)
Q Consensus 80 ~~~t~G~~~al~-~~~~~l~~-l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~-~~~~~~~~d~~~~~~~l~~~-~~ 155 (218)
.+.|.|++++.. +++.+++. ..++++|+++...+++....+..+|+ +++.+.. ...+...+|++.++++|.+. .+
T Consensus 115 ~~~~~~~t~~~~~~~l~a~~~~~~~~~~vi~~~~~H~s~~~a~~~~g~-~~~~v~~~~~~~~~~id~~~l~~~i~~~~~~ 193 (445)
T d3bc8a1 115 CFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMVTAGF-EPVVIENVLEGDELRTDLKAVEAKIQELGPE 193 (445)
T ss_dssp EEEESSCHHHHHHHHHHHHHHHCTTCCEEEEECCCCHHHHHHHHHTTC-EEEEECCEEETTEEECCHHHHHHHHHHHCGG
T ss_pred ccccccchHHHHHHHHHHHHHhCCCCCEEEEcCcccHHHHHHHHHcCC-eeEEEEeeccCcccccCHHHHHHHHHhcccc
Confidence 457788886443 33333332 23589999999999999999999999 8888754 23445678999999999754 23
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
++.+++...|+|++|. +|+++|+++++|++.| .+|..
T Consensus 194 ~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD--~a~~~ 235 (445)
T d3bc8a1 194 HILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVN--NAYGL 235 (445)
T ss_dssp GEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE--CTTTT
T ss_pred CeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEE--ccchh
Confidence 4566666789999998 8999999999999999 88764
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=98.52 E-value=2.6e-07 Score=78.58 Aligned_cols=119 Identities=17% Similarity=0.232 Sum_probs=85.8
Q ss_pred ccCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH
Q psy6266 45 HEYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 45 ~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~ 122 (218)
+.|+-. .....|.+++++...+ . .++++.+|+.|+..++.++ +.+||.|++++..|++-...++.
T Consensus 51 ~~Y~R~~nPT~~~LE~~la~LEg~-~----------~a~~~~SGmaAi~~~l~~l--~~~Gd~vl~~~~~Yg~t~~l~~~ 117 (392)
T d1gc0a_ 51 HFYSRISNPTLNLLEARMASLEGG-E----------AGLALASGMGAITSTLWTL--LRPGDEVLLGNTLYGCTFAFLHH 117 (392)
T ss_dssp ------CCHHHHHHHHHHHHHHTC-S----------EEEEESSHHHHHHHHHHHH--CCTTCEEEEESSCCSHHHHHHHH
T ss_pred ceecCCCChHHHHHHHHHHHHhCC-c----------ceeehhhHHHHHHHHHHhh--ccCCCeeecccccchhhhhhhhh
Confidence 346543 2256677777776644 1 2468899999999888766 68999999999999998776654
Q ss_pred h----CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeC
Q psy6266 123 A----GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 123 ~----g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D 187 (218)
. |. ++..+ +. .|.+.++++++ +++++++.=+|.|||.. .|+++|+++++.++.|
T Consensus 118 ~~~~~Gi-~~~~~---d~----~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvD 180 (392)
T d1gc0a_ 118 GIGEFGV-KLRHV---DM----ADLQALEAAMT---PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVD 180 (392)
T ss_dssp TGGGGTC-EEEEE---CT----TCHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEE
T ss_pred hhccCCc-ccccC---Cc----cCHHHHHHhCC---CCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEe
Confidence 4 54 44443 21 37788888885 55666666799999997 8999999999999999
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=98.50 E-value=1.9e-07 Score=80.62 Aligned_cols=136 Identities=13% Similarity=0.143 Sum_probs=94.4
Q ss_pred CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH-----hcCCCeEEecCCCchhHH
Q psy6266 43 LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR-----ILNYTTFYYSKPTWENHR 117 (218)
Q Consensus 43 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~-----l~~gd~V~i~~P~y~~y~ 117 (218)
+...|+...+..+|++.+++++ + . +. ++.|++|++|..+++.++.. ....+.++.+.+.|..+.
T Consensus 67 gd~~y~~~~~~~~le~~~a~l~-g-~-------~~--~~~~~sGt~A~~~a~~~~~~~g~~~~~~~~~~i~~~~h~~t~~ 135 (465)
T d1ax4a_ 67 GDEAYAGSRNYYDLKDKAKELF-N-Y-------DY--IIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTA 135 (465)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHH-C-C-------CE--EEEESSHHHHHHHHHHHHHHHHHHTTCCSSCEEEESSCCHHHH
T ss_pred hhhhhccChHHHHHHHHHHHHH-C-C-------CE--EEECCCcHHHHHHHHHHHHHHHHhcCCCCCeEEeccchhhhhH
Confidence 3456999999999999999876 4 2 23 35788999999998887732 112344567788888888
Q ss_pred HHHHHhCCCcceeEec--------cCCcCccccHHHHHHHHhcCCCC-cEEEEcccCCCCcHH---------HHHHHhhc
Q psy6266 118 LVFLNAGFTEAREYRY--------WNPEKRAVDFTGMYEDLVNAPDN-SVIILHACAHNPTAQ---------QVAHMVDK 179 (218)
Q Consensus 118 ~~~~~~g~~~~~~~~~--------~~~~~~~~d~~~~~~~l~~~~~~-~~iil~~~p~NPTG~---------~l~~l~~~ 179 (218)
..+...|+ .++.... .......+|++.+++.+++..+. ..++++...||..|. +|.++|++
T Consensus 136 ~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~ 214 (465)
T d1ax4a_ 136 AHVELNGC-KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQ 214 (465)
T ss_dssp HHHHHTTC-EEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCC-eeecccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHH
Confidence 88888888 7765432 11223457999999998764332 233443344444432 78899999
Q ss_pred CeEEEeeCCceee
Q psy6266 180 HHVYLLRSGRINM 192 (218)
Q Consensus 180 ~~i~ii~D~r~~y 192 (218)
|+++++.| +++
T Consensus 215 ~g~~l~~D--~~~ 225 (465)
T d1ax4a_ 215 HGIFVVMD--SAR 225 (465)
T ss_dssp HTCCEEEE--CTT
T ss_pred cCCEEEEE--Ccc
Confidence 99999999 654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=98.46 E-value=1.6e-07 Score=80.34 Aligned_cols=110 Identities=8% Similarity=0.071 Sum_probs=83.0
Q ss_pred EeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEec-cCCcCccccHHHHHHHHhcC--CCCcE
Q psy6266 82 QTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRY-WNPEKRAVDFTGMYEDLVNA--PDNSV 158 (218)
Q Consensus 82 ~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~-~~~~~~~~d~~~~~~~l~~~--~~~~~ 158 (218)
+..|++.++.+++.+.+...++++|+++.-..++....++..|+ +++.++. +..+...+|++.+++.|.+. .....
T Consensus 135 ~~~~t~~~~~~~l~a~r~~~~~~~vi~s~~~H~s~~k~~~~~g~-~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~ 213 (434)
T d2z67a1 135 TPISTGMSISLCLSAARKKYGSNVVIYPYASHKSPIKAVSFVGM-NMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRP 213 (434)
T ss_dssp ESSCHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHTTC-EEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCE
T ss_pred cCcHHHHHHHHHHHHHHHhhcCceEEEeccCCHHHHHHHHHhCC-cceEEEeecCCCccCCCHHHHHHHHHhhhhcCCce
Confidence 44444455556666654444799999999999999888999999 8888764 33344567999999999753 23445
Q ss_pred EEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeecc
Q psy6266 159 IILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCG 194 (218)
Q Consensus 159 iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~ 194 (218)
+++..+|++++|. +|+++|++|++|++.| .+|..
T Consensus 214 ~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD--~a~g~ 252 (434)
T d2z67a1 214 CVLSTLTFFPPRNSDDIVEIAKICENYDIPHIIN--GAYAI 252 (434)
T ss_dssp EEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEE--CTTTT
T ss_pred EEEeccCcCCCccccCHHHHHHHHHHhCCeEEEe--ccchh
Confidence 5555678888887 8999999999999999 78754
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=98.46 E-value=2.2e-07 Score=80.65 Aligned_cols=130 Identities=13% Similarity=0.042 Sum_probs=94.6
Q ss_pred CccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh
Q psy6266 44 NHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA 123 (218)
Q Consensus 44 ~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~ 123 (218)
.-.|.......+|.+.+++++-. +. ++.|+.|+.|..++++++ +.|||+|+.... |.....-+...
T Consensus 68 Dd~Y~~dpt~~~lE~~~a~l~G~---------e~--al~~~SGt~An~~a~~~l--~~~Gd~Vi~~~~-f~~~~~~i~~~ 133 (456)
T d1c7ga_ 68 DEAYAGSENFYHLEKTVKELFGF---------KH--IVPTHQGRGAENLLSQLA--IKPGQYVAGNMY-FTTTRFHQEKN 133 (456)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHCC---------SE--EEEESSHHHHHHHHHHHH--CCTTEEEEESSC-CHHHHHHHHHT
T ss_pred chhccCCchHHHHHHHHHHHhCC---------Ce--EEECCCHHHHHHHHHHHh--cCCCCeEecCcc-hHHHHHHHHHc
Confidence 44699888889999999887632 22 357888999999998887 689999887655 55555556777
Q ss_pred CCCcceeEecc--------CCcCccccHHHHHHHHhcCCCC-cEEEEcccCCCCcHH---------HHHHHhhcCeEEEe
Q psy6266 124 GFTEAREYRYW--------NPEKRAVDFTGMYEDLVNAPDN-SVIILHACAHNPTAQ---------QVAHMVDKHHVYLL 185 (218)
Q Consensus 124 g~~~~~~~~~~--------~~~~~~~d~~~~~~~l~~~~~~-~~iil~~~p~NPTG~---------~l~~l~~~~~i~ii 185 (218)
|+ .++.+... ......+|++.+++.|++.++. ..+++..++||+.|. +|.++|++|++.++
T Consensus 134 g~-~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~ 212 (456)
T d1c7ga_ 134 GA-TFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIF 212 (456)
T ss_dssp TE-EEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEE
T ss_pred Cc-eeeeccccccccccccCCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEE
Confidence 87 66654321 1123456999999999764322 234555678999883 78899999999999
Q ss_pred eCC
Q psy6266 186 RSG 188 (218)
Q Consensus 186 ~D~ 188 (218)
.|+
T Consensus 213 ~D~ 215 (456)
T d1c7ga_ 213 YDA 215 (456)
T ss_dssp EEC
T ss_pred EEc
Confidence 996
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=98.44 E-value=1.6e-07 Score=75.85 Aligned_cols=149 Identities=9% Similarity=-0.029 Sum_probs=97.9
Q ss_pred CchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCe
Q psy6266 26 VLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTT 105 (218)
Q Consensus 26 ~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~ 105 (218)
..|.|.+|++++.. +....|.+.....++|+.+++++ + . + .. ++.|.||++|..+++.++ +.+++.
T Consensus 15 ~~P~v~~A~~~a~~--~~~~~~~~~~~~~~l~~~la~~~-g-~-----~-~~--v~f~~sGt~An~~a~~~~--~~~~~~ 80 (345)
T d1v72a1 15 ASPEVAQALVKHSS--GQAGPYGTDELTAQVKRKFCEIF-E-R-----D-VE--VFLVPTGTAANALCLSAM--TPPWGN 80 (345)
T ss_dssp CCHHHHHHHHHTTS--SCCCSTTCSHHHHHHHHHHHHHH-T-S-----C-CE--EEEESCHHHHHHHHHHTS--CCTTEE
T ss_pred CCHHHHHHHHHHhc--cCccccCCCHHHHHHHHHHHHHH-C-C-----C-cE--EEECCchHHHHHHHHHHH--HhcCCc
Confidence 46778888877553 24456888888999999999886 4 2 1 22 357899999988877654 457888
Q ss_pred EEecCCCchhHHHHH---HHhCCCcceeEeccCCcCccccHHHHHHHHhcCC---CC-cEEEEcccCCCCcHH-------
Q psy6266 106 FYYSKPTWENHRLVF---LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAP---DN-SVIILHACAHNPTAQ------- 171 (218)
Q Consensus 106 V~i~~P~y~~y~~~~---~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~---~~-~~iil~~~p~NPTG~------- 171 (218)
+++.......+.... ...+. .+... ........+.+.+.+.+.... .. ...++..++.|++|.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (345)
T d1v72a1 81 IYCHPASHINNDECGAPEFFSNG-AKLMT--VDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEI 157 (345)
T ss_dssp EEECTTSHHHHSSTTHHHHHTTS-CEEEE--CCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHH
T ss_pred cccccccceeeechhhHHHhcCc-ccccc--cccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhh
Confidence 888777766654322 22333 33333 223334568999988886531 11 122333456666664
Q ss_pred -HHHHHhhcCeEEEeeCCceeec
Q psy6266 172 -QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 172 -~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++.++|++|+++++.| +++.
T Consensus 158 ~~i~~~~~~~~~~~~~D--~~~~ 178 (345)
T d1v72a1 158 EAIGDVCKSSSLGLHMD--GSRF 178 (345)
T ss_dssp HHHHHHHHHTTCEEEEE--ETTH
T ss_pred hhHHHHHHhcCceeeec--cccc
Confidence 6788899999999999 7764
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=98.41 E-value=2.6e-07 Score=77.59 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=96.7
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCC
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNY 103 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~g 103 (218)
|...+.-.++..++++. + .|+.-.-..+|-+.+++++-. + . ++.+.+|+.|+.++++++. +.+|
T Consensus 8 p~~~~~~~~~v~~~l~~--~--~~~~G~~v~~fE~~~~~~~g~-k--------~--ai~~~Sgt~Al~~al~al~-~~~~ 71 (371)
T d2fnua1 8 PCLDKEDKKAVLEVLNS--K--QLTQGKRSLLFEEALCEFLGV-K--------H--ALVFNSATSALLTLYRNFS-EFSA 71 (371)
T ss_dssp CCCCHHHHHHHHHHHTS--S--CCSSSHHHHHHHHHHHHHHTC-S--------E--EEEESCHHHHHHHHHHHSS-CCCT
T ss_pred CCCCHHHHHHHHHHHcC--C--CccCCHHHHHHHHHHHHHHCc-C--------e--EEEEecHHHHHHHHHHHhc-ccCC
Confidence 44556666676676643 2 244322367888888887643 2 1 3578888999999888763 3344
Q ss_pred --CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcE-EEEcccCCCCcHH-HHHHHhhc
Q psy6266 104 --TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSV-IILHACAHNPTAQ-QVAHMVDK 179 (218)
Q Consensus 104 --d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~-iil~~~p~NPTG~-~l~~l~~~ 179 (218)
|+|++|+=+|+.-...+...|+ +|+.+... .+. .++.+.+++.+ ++++. ++......+|.-. ++.++|++
T Consensus 72 ~~~eVi~p~~t~~a~~~ai~~~G~-~pv~vDi~-~~~-~~~~~~~~~~~---~~~t~avi~vh~~G~~~~~~~i~~~~~~ 145 (371)
T d2fnua1 72 DRNEIITTPISFVATANMLLESGY-TPVFAGIK-NDG-NIDELALEKLI---NERTKAIVSVDYAGKSVEVESVQKLCKK 145 (371)
T ss_dssp TSCEEEECSSSCTHHHHHHHHTTC-EEEECCBC-TTS-SBCGGGSGGGC---CTTEEEEEEECGGGCCCCHHHHHHHHHH
T ss_pred CCCeeecccccccccceeeeccCc-cccccccc-ccc-cccchhhhhhc---cchhhccccccccccccccccccccccc
Confidence 4899999999999999999999 99999773 333 33444444433 34443 3434444555444 89999999
Q ss_pred CeEEEeeCC
Q psy6266 180 HHVYLLRSG 188 (218)
Q Consensus 180 ~~i~ii~D~ 188 (218)
+++++|+|.
T Consensus 146 ~~i~lIEDa 154 (371)
T d2fnua1 146 HSLSFLSDS 154 (371)
T ss_dssp HTCEEEEEC
T ss_pred cchhhccch
Confidence 999999994
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=98.37 E-value=1.1e-06 Score=74.64 Aligned_cols=123 Identities=14% Similarity=0.142 Sum_probs=88.7
Q ss_pred CccCcCCCCc---HHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH
Q psy6266 44 NHEYLPVLGL---ESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF 120 (218)
Q Consensus 44 ~~~Y~~~~G~---~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~ 120 (218)
.+.|+-. |. ..|-+++++..-+ + ..+.+++|+.|+..++.++ +.+||+|++++..|..-...+
T Consensus 54 ~~~Y~R~-~nPT~~~LE~~la~LEgg---------~--~a~~~sSGmaAi~~~l~~l--l~~Gd~vi~~~~~Yg~t~~~~ 119 (397)
T d1y4ia1 54 GYIYTRL-GNPTTDALEKKLAVLERG---------E--AGLATASGISAITTTLLTL--CQQGDHIVSASAIYGCTHAFL 119 (397)
T ss_dssp SSCCCTT-SCHHHHHHHHHHHHHHTC---------S--EEEEESSHHHHHHHHHHHH--CCTTCEEEEESSSCHHHHHHH
T ss_pred CceeeCC-CCHHHHHHHHHHHHHhCC---------c--cceeehHHHHHHHHHHhhc--cCCCCeeeeecccccccchhh
Confidence 3456653 54 4455556655433 1 2468889999998887766 789999999999998866544
Q ss_pred ----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCcee
Q psy6266 121 ----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRIN 191 (218)
Q Consensus 121 ----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~ 191 (218)
...|. ++..+. . .|.+.++++++ +++.++..=+|.|||.. .++++|+++++.++.| -.
T Consensus 120 ~~~l~~~Gi-~~~~vd---~----~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvD--nT 186 (397)
T d1y4ia1 120 SHSMPKFGI-NVRFVD---A----GKPEEIRAAMR---PETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVD--NT 186 (397)
T ss_dssp HTHHHHTTC-EEEEEC---T----TSHHHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE--CT
T ss_pred hcccCCCce-EeeccC---C----CCHHHHHHhcC---CCCcEEEecCCcccceeecccHHHHHHhhcCCceEEec--Cc
Confidence 34566 565552 2 26788888884 45666766799999997 7899999999999999 44
Q ss_pred ec
Q psy6266 192 MC 193 (218)
Q Consensus 192 y~ 193 (218)
+.
T Consensus 187 ~a 188 (397)
T d1y4ia1 187 FM 188 (397)
T ss_dssp TT
T ss_pred cc
Confidence 44
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=98.35 E-value=3.5e-06 Score=71.16 Aligned_cols=165 Identities=11% Similarity=0.012 Sum_probs=114.0
Q ss_pred CCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC---CCC----cHHHHHHHHHHhcCCCCCCCcCCCc
Q psy6266 5 SGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP---VLG----LESFSSAATRMLLGGDASPPLREGR 77 (218)
Q Consensus 5 ~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~---~~G----~~~lr~aia~~~~~~~~~~~~~~~~ 77 (218)
.|...+||+-=.| -| ....|.|++|..+.+++ .-.+.+. ..| ..+|-+.+++++-. +.
T Consensus 36 ~g~~~l~f~s~dY---LG-l~~~p~v~~a~~~a~~~--~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~---------e~ 100 (383)
T d1bs0a_ 36 DDRQYLNFSSNDY---LG-LSHHPQIIRAWQQGAEQ--FGIGSGGSGHVSGYSVVHQALEEELAEWLGY---------SR 100 (383)
T ss_dssp TTEEEEECSCCCT---TS-GGGCHHHHHHHHHHHHH--HCSCCCSBTTTTCCCHHHHHHHHHHHHHHTC---------SE
T ss_pred CCeEEEEEEcccc---cc-cCCCHHHHHHHHHHHHH--hCCCCCccccccCcchHHHHHHHHHHHhcCC---------Cc
Confidence 3566777765433 12 34466788777776654 1111222 123 37788888887632 22
Q ss_pred eEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 78 AFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 78 v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
++.++.+..|...++.++ ..++|.|+...-.+.+....++..++ +.+.++. .|.+.+++.+.+.++..
T Consensus 101 --al~~~SG~~an~~~i~al--~~~~d~v~~d~~~h~si~~g~~~~~~-~~~~~~h-------nd~~~le~~l~~~~~~~ 168 (383)
T d1bs0a_ 101 --ALLFISGFAANQAVIAAM--MAKEDRIAADRLSHASLLEAASLSPS-QLRRFAH-------NDVTHLARLLASPCPGQ 168 (383)
T ss_dssp --EEEESCHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHTSSS-EEEEECT-------TCHHHHHHHHHSCCSSC
T ss_pred --eEEecccchhhHHHHHhh--cCCCceEEeeccccHHHhhccccCCC-cceEecc-------hHHHHHHHHhcccCCCc
Confidence 356777777777777776 56899999999999988888887776 6655532 36778888887765556
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
.+++.....+.+|. ++.+++++|+++++.| ++.+....+
T Consensus 169 ~~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livD--eah~~gv~G 212 (383)
T d1bs0a_ 169 QMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVD--DAHGTGVIG 212 (383)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEE--CTTTTTTSS
T ss_pred eEEEecCCCCCCCcccchhHHHHHHHhcCcEEEee--cceeeeecC
Confidence 66777889999996 8999999999999999 777654443
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=98.35 E-value=2.5e-06 Score=72.32 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=104.6
Q ss_pred EEeCCCCCccCchHHHHHHHHHhhcCCC-CccCcCCCC------cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChh
Q psy6266 16 AYRTEECKPWVLPVVRQAEKELAADDSL-NHEYLPVLG------LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTG 88 (218)
Q Consensus 16 ~~~~~~~~~~~~~~v~~a~~~~~~~~~~-~~~Y~~~~G------~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~ 88 (218)
+|-|-.+--++|+.|.++..+..++... .++-....| +++.|+.+++++.. -.++.+ +.|.++++
T Consensus 24 iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~llga------~~~~~i--~~~~~tt~ 95 (408)
T d1t3ia_ 24 VYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKFINA------RSPREI--VYTRNATE 95 (408)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHHTTC------SCGGGE--EEESSHHH
T ss_pred EEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCC------CCcccE--EeecchHH
Confidence 3555555557899999988776644111 111111111 34677888877633 123433 47788888
Q ss_pred HHHHHHHHH--HHhcCCCeEEecCCCchhHHHHH----HHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEc
Q psy6266 89 ALRVGAEFL--HRILNYTTFYYSKPTWENHRLVF----LNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILH 162 (218)
Q Consensus 89 al~~~~~~l--~~l~~gd~V~i~~P~y~~y~~~~----~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~ 162 (218)
++.++...+ ..+.+||+|++.+=.|++-...+ +..|. +++.+|.. .....+.+.+.+.+. ++++++..
T Consensus 96 ~~n~~~~~~~~~~~~~g~~il~s~~e~~s~~~~~~~~~~~~g~-~v~~~~~~--~~~~~~~~~l~~~~~---~~t~lv~i 169 (408)
T d1t3ia_ 96 AINLVAYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGA-VLKFVQLD--EQESFDLEHFKTLLS---EKTKLVTV 169 (408)
T ss_dssp HHHHHHHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCC-EEEEECBC--TTSSBCHHHHHHHCC---TTEEEEEE
T ss_pred HHHHHHhhccccccCCCCEEEeecccchhhhhhhhhhhhccCc-eEeeeecc--ccccccHHHhhhccC---CCceEEEE
Confidence 888776642 12568999999998888754333 44577 77777653 234568888877663 56666666
Q ss_pred ccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 163 ACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 163 ~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
.-.+|-||. +|.++|++++++++.|+
T Consensus 170 ~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa 200 (408)
T d1t3ia_ 170 VHISNTLGCVNPAEEIAQLAHQAGAKVLVDA 200 (408)
T ss_dssp ESBCTTTCBBCCHHHHHHHHHHTTCEEEEEC
T ss_pred ecccccccccCcHHHHhhhhhccCceeeecc
Confidence 677899997 78899999999999994
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=98.21 E-value=4.8e-06 Score=70.46 Aligned_cols=122 Identities=12% Similarity=0.136 Sum_probs=85.3
Q ss_pred ccCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHH
Q psy6266 45 HEYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLN 122 (218)
Q Consensus 45 ~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~ 122 (218)
+.|+-. .....|.++++++.-+ + .++.+.+|+.|+..++.++ +.+||.|++++..|+.....+..
T Consensus 42 ~~Y~R~~nPt~~~le~~la~LEgg---------~--~a~~~sSGMaAi~~~l~~l--~~~gd~vv~~~~~yg~t~~~~~~ 108 (384)
T d1cs1a_ 42 HDYSRRGNPTRDVVQRALAELEGG---------A--GAVLTNTGMSAIHLVTTVF--LKPGDLLVAPHDCYGGSYRLFDS 108 (384)
T ss_dssp CSBTTTCCHHHHHHHHHHHHHHTC---------S--EEEEESSHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHHH
T ss_pred CcccCCCCHHHHHHHHHHHHHhCC---------C--ceEEecChHHHHHHHHhhc--ccccceecccccccchhhhhhhh
Confidence 446543 2235666677766543 1 2468899999999887766 67999999999999876555544
Q ss_pred h----CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceee
Q psy6266 123 A----GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 123 ~----g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y 192 (218)
. |. +...+ + ..|.+.+++++.. ++.+++.=+|.|||-. .|+++|+++++.+|.| -.+
T Consensus 109 ~~~~~g~-~~~~~---d----~~d~~~~~~~~~~---~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVD--NT~ 174 (384)
T d1cs1a_ 109 LAKRGCY-RVLFV---D----QGDEQALRAALAE---KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVD--NTF 174 (384)
T ss_dssp HHTTTSC-EEEEE---C----TTCHHHHHHHHHT---CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEE--CTT
T ss_pred hhccccc-ccccc---c----CCCHHHHHhhccc---cccEEEEeccccccceeccHHHHhhhhhhcCcEEEEe--ccc
Confidence 3 22 22222 2 2367788887863 4445555799999997 8999999999999999 555
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.20 E-value=4.1e-06 Score=70.77 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh----CCCcce
Q psy6266 54 ESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA----GFTEAR 129 (218)
Q Consensus 54 ~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~----g~~~~~ 129 (218)
..|-+.++++..+ + .++.+..|+.|+..++ .+ +.+||.|++.++.|+.....++.. |. ++.
T Consensus 52 ~~le~~la~LE~~---------~--~a~~fsSGMaAisall-~l--l~~Gd~vv~~~~~Yg~t~~l~~~~~~~~gi-~~~ 116 (380)
T d1ibja_ 52 DALESLLAKLDKA---------D--RAFCFTSGMAALSAVT-HL--IKNGEEIVAGDDVYGGSDRLLSQVVPRSGV-VVK 116 (380)
T ss_dssp HHHHHHHHHHHTC---------S--EEEEESSHHHHHHHHH-TT--SCTTCEEEEESSCCHHHHHHHHHTSGGGTC-EEE
T ss_pred HHHHHHHHHHcCC---------c--eEEehhhHHHHHHHHH-Hh--hCCCCEEEEEecccccccchhhhhhccccc-ccc
Confidence 4566666665533 1 2468888888886433 22 679999999999999988777654 33 333
Q ss_pred eEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 130 EYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 130 ~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
.+ + ..+.+.+++++. +++.+++.-+|.|||.. +|+++|+++++++|.| ..+.
T Consensus 117 ~~---d----~~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVD--nT~a 173 (380)
T d1ibja_ 117 RV---N----TTKLDEVAAAIG---PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVD--NSIM 173 (380)
T ss_dssp EE---C----TTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEE--CTTT
T ss_pred cc---C----cchHHHHHHHhc---cCccEEEeccccccccccccHHHHHHHHHHcCCeEEee--cccc
Confidence 22 1 136677777774 45667777899999997 8999999999999999 5554
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=98.15 E-value=6.3e-06 Score=71.06 Aligned_cols=159 Identities=13% Similarity=0.048 Sum_probs=101.8
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHh---cCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH-h
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRML---LGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR-I 100 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~---~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~-l 100 (218)
+.++.+.+.+.+.++. ....+..+...-++-..+.+++ ++ -. .-..+......|.|||+|..+++.+.+. +
T Consensus 65 ~~~~~~~~l~~~~~~~--N~~~~~~~P~~~~lE~~~v~~la~L~~-~p--~~~~~~~~G~~t~GgSeA~~~a~~aar~~~ 139 (450)
T d1pmma_ 65 WDDENVHKLMDLSINK--NWIDKEEYPQSAAIDLRCVNMVADLWH-AP--APKNGQAVGTNTIGSSEACMLGGMAMKWRW 139 (450)
T ss_dssp CCCHHHHHHHHHTTTC--BTTCTTTSHHHHHHHHHHHHHHHHHTT-CC--CCTTSCCSEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc--CCCCcccCccHHHHHHHHHHHHHHHhC-CC--ccccCCCcCeeeCchHHHHHHHHHHHHHHH
Confidence 4556666666655532 1222222223334444443333 33 11 1111222346999999998887765432 1
Q ss_pred ---------cCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH
Q psy6266 101 ---------LNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ 171 (218)
Q Consensus 101 ---------~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~ 171 (218)
.....++++.....+....++..|+ +++.++.. ++.+.+|.+.+++.+. +.+++++...++|.||.
T Consensus 140 ~~~~~~~g~~~~~~~~~~~~~H~s~~Kaa~~~gi-~~~~v~~~-~~~~~~d~~~L~~~i~---~~t~~Vv~t~gtt~tG~ 214 (450)
T d1pmma_ 140 RKRMEAAGKPTDKPNLVCGPVQICWHKFARYWDV-ELREIPMR-PGQLFMDPKRMIEACD---ENTIGVVPTFGVTYTGN 214 (450)
T ss_dssp HHHHHHHTCCCSCCEEEESSCCHHHHHHHHHTTC-EEEECCCB-TTBCSCCHHHHHHHCC---TTEEEEECBBSCTTTCB
T ss_pred HHHhhhcCCCCCCceEEecccHHHHHHHHHHcCC-CceEeeec-CCCCcCcHHHHHHHhh---hCceEEEeeeeeccCCC
Confidence 1234578888888888888899999 89888874 4457889999999885 45677777788999997
Q ss_pred -----HHH------HHhhcCeEEEeeCCceeeccC
Q psy6266 172 -----QVA------HMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 172 -----~l~------~l~~~~~i~ii~D~r~~y~~l 195 (218)
++. +.++++++|+..| -+|.|+
T Consensus 215 ~dpv~~i~~i~~~~~~a~~~~i~lHVD--AA~gG~ 247 (450)
T d1pmma_ 215 YEFPQPLHDALDKFQADTGIDIDMHID--AASGGF 247 (450)
T ss_dssp BCCHHHHHHHHHHHHHHHCCCCCEEEE--CTTGGG
T ss_pred ccccchhhHHHHHHHHHhccCcEEEee--hhhccc
Confidence 333 3467799999999 777664
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=98.14 E-value=5.1e-06 Score=70.54 Aligned_cols=169 Identities=11% Similarity=-0.066 Sum_probs=105.7
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC-------CCcHHHHHHHHHHhcCCCCCCCcCCC
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV-------LGLESFSSAATRMLLGGDASPPLREG 76 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-------~G~~~lr~aia~~~~~~~~~~~~~~~ 76 (218)
..|...||++--.|- | ....|.|++|.++.++. ..+.+..+ .-..+|.+.+++++-. +
T Consensus 42 ~dG~~~l~f~s~dYL---G-l~~hp~v~~a~~~a~~~--~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~---------e 106 (401)
T d1fc4a_ 42 ADGSHVINFCANNYL---G-LANHPDLIAAAKAGMDS--HGFGMASVRFICGTQDSHKELEQKLAAFLGM---------E 106 (401)
T ss_dssp TTSCEEEECCCSCTT---S-CTTCHHHHHHHHHHHHH--HCSCCCSCHHHHCCBHHHHHHHHHHHHHHTC---------S
T ss_pred cCCCEEEEEEccccc---c-ccCCHHHHHHHHHHHHH--hCCCcccceeeccCcHHHHHHHHHHHHhhcC---------C
Confidence 467888998744331 1 23467788777766643 11223222 2234677777776532 2
Q ss_pred ceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 77 RAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 77 ~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
. +++++++..|...++.++ ..++|.|+...-.+.++..-+...++ +...++..+ .-+.+.+.+.++.....
T Consensus 107 ~--al~~~SG~~An~~~i~~l--~~~~d~i~~d~~~h~s~~~G~~~~~a-~~~~~~~~d----~~~le~~~~~~~~~~~~ 177 (401)
T d1fc4a_ 107 D--AILYSSCFDANGGLFETL--LGAEDAIISDALNHASIIDGVRLCKA-KRYRYANND----MQELEARLKEAREAGAR 177 (401)
T ss_dssp E--EEEESCHHHHHHTTHHHH--CCTTCEEEEETTCCHHHHHHHHTSCS-EEEEECTTC----HHHHHHHHHHHHHTTCS
T ss_pred c--eEEecchhhhhHHHHHHh--cCCCcEEEeCCcchHHHHccccccCc-eEEEEcCCC----hHHHHHHHHHhhhcccC
Confidence 2 357788888888777776 57899999999999998887887777 666653311 11344444444333333
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
..+++.-+-.+..|. ++.++|++++.+++.| ++.+....+
T Consensus 178 ~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivD--eah~~g~~g 222 (401)
T d1fc4a_ 178 HVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVD--DSHAVGFVG 222 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEE--CTTTTTTSS
T ss_pred ceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEeh--hhhcccccc
Confidence 444443223334453 8999999999999999 887755544
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.11 E-value=1.4e-06 Score=72.75 Aligned_cols=147 Identities=12% Similarity=0.049 Sum_probs=92.9
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcC-CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhc
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLP-VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRIL 101 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~ 101 (218)
...+++.|++|+.. . .-.|+=.. ..-+.+.|+.+++.+.. +.+. .++.|.|||+++..+...+ +.
T Consensus 27 P~~~~~~Vl~am~~---~-~i~HRs~~f~~i~~ea~~~l~~llg~-------~~~~-~ii~~gsgT~a~~~~i~~l--~~ 92 (388)
T d1h0ca_ 27 PSNLPPRIMAAGGL---Q-MIGSMSKDMYQIMDEIKEGIQYVFQT-------RNPL-TLVISGSGHCALEAALVNV--LE 92 (388)
T ss_dssp CCCCCHHHHHHHTC---C-CCCTTSHHHHHHHHHHHHHHHHHHTC-------CCSE-EEEESSCHHHHHHHHHHHH--CC
T ss_pred CCCCCHHHHHHhCc---C-CCCCCCHHHHHHHHHHHHHHHHHhCC-------CCCc-EEEEcCcHHHHHHHHHHHh--hc
Confidence 35678899887532 1 11222100 12256666666655532 2222 2357788899999888766 67
Q ss_pred CCCeEEecCCCchhHHHH--HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHH
Q psy6266 102 NYTTFYYSKPTWENHRLV--FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVA 174 (218)
Q Consensus 102 ~gd~V~i~~P~y~~y~~~--~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~ 174 (218)
+||++++....+...... ....+. ....+.. ......+.+...+.+.+.+ +.++.....+|.||. +|.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~n~tG~i~pi~~i~ 167 (388)
T d1h0ca_ 93 PGDSFLVGANGIWGQRAVDIGERIGA-RVHPMTK--DPGGHYTLQEVEEGLAQHK--PVLLFLTHGESSTGVLQPLDGFG 167 (388)
T ss_dssp SSCCEEECBSSHHHHHHHHHHHHHC---CBCCBC--CTTCCCCHHHHHHHHHHHC--CSEEEEESEETTTTEECCCTTHH
T ss_pred cCCceeeecccceeeeeccccccccc-ccccccc--CCccccchHHHHHHhccCC--cceEEEeeeeeccccccCHHHHH
Confidence 999999999988865533 344455 4555443 2334678888877776532 233333456889997 799
Q ss_pred HHhhcCeEEEeeCC
Q psy6266 175 HMVDKHHVYLLRSG 188 (218)
Q Consensus 175 ~l~~~~~i~ii~D~ 188 (218)
++|++++++++.|+
T Consensus 168 ~~~~~~g~~~~vD~ 181 (388)
T d1h0ca_ 168 ELCHRYKCLLLVDS 181 (388)
T ss_dssp HHHHTTTCEEEEEC
T ss_pred HHhhcccccceecc
Confidence 99999999999994
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.10 E-value=1.1e-05 Score=68.48 Aligned_cols=125 Identities=13% Similarity=0.097 Sum_probs=85.4
Q ss_pred CccCcCC--CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH
Q psy6266 44 NHEYLPV--LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL 121 (218)
Q Consensus 44 ~~~Y~~~--~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~ 121 (218)
...|+-. .-...|-+.++++.-+ + .++.+..|+.|+..++.++ +.+||.|++++..|+.-...++
T Consensus 58 ~~~Y~R~~nPt~~~LE~~la~LEgg---------~--~a~~~sSGMaAi~~~l~~l--~~~Gd~iv~~~~~Yg~t~~l~~ 124 (398)
T d1qgna_ 58 SFEYGRYGNPTTVVLEEKISALEGA---------E--STLLMASGMCASTVMLLAL--VPAGGHIVTTTDCYRKTRIFIE 124 (398)
T ss_dssp CCCBGGGCCHHHHHHHHHHHHHHTC---------S--EEEEESCHHHHHHHHHHHH--SCSSCEEEEETTSCHHHHHHHH
T ss_pred CceecCCCChHHHHHHHHHHHHhCC---------c--eEEEecCcchHHHHHHhhc--ccccccccccccccchhhhhhc
Confidence 3456553 2235566777776543 1 2568899999999887766 6799999999999998776665
Q ss_pred Hh----CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceee
Q psy6266 122 NA----GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 122 ~~----g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y 192 (218)
.. |. ++..+ .. .+.....+.+.. +++.+++.=+|.|||-. +|+++|+++++.++.| -.+
T Consensus 125 ~~~~~~gi-~~~~~---~~----~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVD--nT~ 192 (398)
T d1qgna_ 125 TILPKMGI-TATVI---DP----ADVGALELALNQ--KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID--GTF 192 (398)
T ss_dssp HTGGGGTC-EEEEE---CS----SCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE--CTT
T ss_pred cccccccc-ccccc---cc----cchhhhhhhhcc--ccceEEEccCccccccccchHHHHHHHHhhcCCEEEec--cee
Confidence 44 33 33333 11 133434443332 45566666799999997 8999999999999999 554
Q ss_pred c
Q psy6266 193 C 193 (218)
Q Consensus 193 ~ 193 (218)
.
T Consensus 193 a 193 (398)
T d1qgna_ 193 A 193 (398)
T ss_dssp T
T ss_pred e
Confidence 4
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=98.07 E-value=6.6e-06 Score=70.35 Aligned_cols=123 Identities=14% Similarity=0.057 Sum_probs=83.2
Q ss_pred ccCcCCCCc---HHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH
Q psy6266 45 HEYLPVLGL---ESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL 121 (218)
Q Consensus 45 ~~Y~~~~G~---~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~ 121 (218)
.-|+-. |. ..|-++++++..+ + .++.+.+|+.|+..++..+ +.+||.|+++++.|++....++
T Consensus 50 ~~YsR~-~nPT~~~LE~~la~LE~~---------~--~a~~~~SGmaAi~~~~~~l--~~~gd~il~~~~~Yg~t~~l~~ 115 (421)
T d2ctza1 50 NIYSRI-MNPTVDVLEKRLAALEGG---------K--AALATASGHAAQFLALTTL--AQAGDNIVSTPNLYGGTFNQFK 115 (421)
T ss_dssp GSCBTT-BCHHHHHHHHHHHHHHTC---------S--EEEEESSHHHHHHHHHHHH--CCTTCEEEECSCCCHHHHHHHH
T ss_pred ceecCC-CCHHHHHHHHHHHHHhCC---------C--eEEEecChHHHHHHHHHhh--cccccceeecCCcCCchhHHHH
Confidence 346553 43 4555566655533 1 2468888898988877666 6799999999999988776554
Q ss_pred ----HhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceee
Q psy6266 122 ----NAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINM 192 (218)
Q Consensus 122 ----~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y 192 (218)
..|. +...+.. . ...+..++.+ .+++.+++.=+|.|||.. .|+++|+++++.++.| -.+
T Consensus 116 ~~~~~~gi-~~~~~d~---~---~~~~~~~~~~---~~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvD--nT~ 183 (421)
T d2ctza1 116 VTLKRLGI-EVRFTSR---E---ERPEEFLALT---DEKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVD--NTF 183 (421)
T ss_dssp THHHHTTC-EEEECCT---T---CCHHHHHHHC---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEE--CGG
T ss_pred HHHhhccc-cceeccc---c---cCcchhcccc---CCCceEEEEcCCCcceeEecchHHHHHHHHhcCCceEec--ccc
Confidence 3454 4443321 1 1223333333 256667777799999997 8999999999999999 666
Q ss_pred c
Q psy6266 193 C 193 (218)
Q Consensus 193 ~ 193 (218)
.
T Consensus 184 a 184 (421)
T d2ctza1 184 G 184 (421)
T ss_dssp G
T ss_pred c
Confidence 4
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=98.07 E-value=2.5e-06 Score=71.54 Aligned_cols=150 Identities=7% Similarity=-0.069 Sum_probs=91.5
Q ss_pred ccCchHHHHHHHHHhhcCCCCccCc--CC----CCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHH
Q psy6266 24 PWVLPVVRQAEKELAADDSLNHEYL--PV----LGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFL 97 (218)
Q Consensus 24 ~~~~~~v~~a~~~~~~~~~~~~~Y~--~~----~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l 97 (218)
-++|..|.+|..+...+........ .. .-.++.|+++++++. .++++| +.|.++|+++..++...
T Consensus 37 g~~p~~v~~a~~~~l~~~~~~~~~~~~~~~~~~~~~e~~R~~iA~llg-------a~~~ei--~~~~~~T~~~~~~~~~~ 107 (404)
T d1qz9a_ 37 GARPVAALARAQAVIAEEWGNGLIRSWNSAGWRDLSERLGNRLATLIG-------ARDGEV--VVTDTTSINLFKVLSAA 107 (404)
T ss_dssp CCCBTTHHHHHHHHHHTCCCCCGGGHHHHTSGGGHHHHHHHHHHTTTT-------CCTTSE--EECSCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHhcccCcccccchhHHHHHHHHHHHHHHHhC-------CCCCcE--EEecCchHHHHHHhhhh
Confidence 3678899998877664311111111 11 113467777776653 345565 48888888887654311
Q ss_pred ----HHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH--
Q psy6266 98 ----HRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-- 171 (218)
Q Consensus 98 ----~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-- 171 (218)
....++++|++.+-.+++........+. +....+... ....+.+.+++.+. +++.++.....+|.||.
T Consensus 108 ~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~---~~T~lV~i~~v~~~tG~~~ 181 (404)
T d1qz9a_ 108 LRVQATRSPERRVIVTETSNFPTDLYIAEGLA-DMLQQGYTL--RLVDSPEELPQAID---QDTAVVMLTHVNYKTGYMH 181 (404)
T ss_dssp HHHHHHHSTTCCEEEEETTSCHHHHHHHHHHH-HHHCSSCEE--EEESSGGGHHHHCS---TTEEEEEEESBCTTTCBBC
T ss_pred hhhhcccCCCcEEEEeccccchHHHHHHhhhh-eeeeeceec--cccccchhHHHhcC---CCceEEEEeccccccccee
Confidence 1145789988887665554333322223 322222211 12335666777664 56777777889999998
Q ss_pred ---HHHHHhhcCeEEEeeCC
Q psy6266 172 ---QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 172 ---~l~~l~~~~~i~ii~D~ 188 (218)
+|+++|+++++.++.|+
T Consensus 182 pv~~i~~~~~~~~~~~~vD~ 201 (404)
T d1qz9a_ 182 DMQALTALSHECGALAIWDL 201 (404)
T ss_dssp CHHHHHHHHHHHTCEEEEEC
T ss_pred cHHHHhccccccccceeEEe
Confidence 89999999999999994
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=98.04 E-value=8.9e-06 Score=67.46 Aligned_cols=109 Identities=12% Similarity=0.127 Sum_probs=77.5
Q ss_pred HHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH----HHHhCCCccee
Q psy6266 55 SFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV----FLNAGFTEARE 130 (218)
Q Consensus 55 ~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~----~~~~g~~~~~~ 130 (218)
.|-+.++++..+ + .++.+..|+.|+..++..+ +.|||.|+++++.|+.-... ++..|. ++..
T Consensus 2 aLE~~la~Leg~---------~--~a~~~sSGMaAi~~~l~~l--l~~Gd~iv~~~~~Yg~t~~~~~~~l~~~gi-~~~~ 67 (331)
T d1pffa_ 2 ALEGKIAKLEHA---------E--ACAATASGMGAIAASVWTF--LKAGDHLISDDCLYGCTHALFEHQLRKFGV-EVDF 67 (331)
T ss_dssp HHHHHHHHHHTC---------S--EEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHHTHHHHTTC-EEEE
T ss_pred HHHHHHHHHhCC---------C--eEEEECCHHHHHHHHHHHH--hCCCCEEEEeCCCchHHHHHHHHHHHhcCe-EEEE
Confidence 356677776543 1 2468899999998877666 78999999999999775444 455676 5555
Q ss_pred EeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHH-hhcCeEEEeeC
Q psy6266 131 YRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHM-VDKHHVYLLRS 187 (218)
Q Consensus 131 ~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l-~~~~~i~ii~D 187 (218)
+.. .|.+.++++++ +++.+++.-+|.|||.. .+.++ ++++++.++.|
T Consensus 68 ~d~-------~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVD 120 (331)
T d1pffa_ 68 IDM-------AVPGNIEKHLK---PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVD 120 (331)
T ss_dssp ECT-------TSTTHHHHTCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEE
T ss_pred ecc-------cchhhHhhhcc---cccceeeeecccccccccccchhhhhhhhcccCceEEee
Confidence 522 25566777664 55666666789999986 46666 46789999999
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=2.8e-06 Score=73.25 Aligned_cols=132 Identities=12% Similarity=0.115 Sum_probs=90.8
Q ss_pred CCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCC---------eEEecCCCc
Q psy6266 43 LNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYT---------TFYYSKPTW 113 (218)
Q Consensus 43 ~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd---------~V~i~~P~y 113 (218)
+...|.-..+..+|.+.+++++ + . +. ++.+.+|+.|..+++.++. .+|| .+.....++
T Consensus 66 gd~~Y~~~~~~~~le~~~a~l~-G-~-------~~--~~~~~sGt~A~~~a~~~~~--~~g~~~~~~~~~~~i~~~~~~~ 132 (467)
T d2v1pa1 66 GDEAFSGSRSYYALAESVKNIF-G-Y-------QY--TIPTHQGRGAEQIYIPVLI--KKREQEKGLDRSKMVAFSNYFF 132 (467)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHT-C-C-------SE--EEEECSSTTTHHHHHHHHH--HHHHHHHCCCTTTCEEEESSCC
T ss_pred cchhhcCCchHHHHHHHHHHHH-C-C-------CE--EEECCCCHHHHHHHHHHHh--hccceEecCCCCcEEEEecccc
Confidence 3456988888999999998765 3 2 22 3578888999988887763 3444 456667778
Q ss_pred hhHHHHHHHhCCCcceeEeccC--------CcCccccHHHHHHHHhcCCC-CcEEEEcccCCCCcHH---------HHHH
Q psy6266 114 ENHRLVFLNAGFTEAREYRYWN--------PEKRAVDFTGMYEDLVNAPD-NSVIILHACAHNPTAQ---------QVAH 175 (218)
Q Consensus 114 ~~y~~~~~~~g~~~~~~~~~~~--------~~~~~~d~~~~~~~l~~~~~-~~~iil~~~p~NPTG~---------~l~~ 175 (218)
......+...|+ .++.++... .....+|++.+++.+.+..+ ...+++....+|-.|. +|.+
T Consensus 133 ~~~~~~~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ 211 (467)
T d2v1pa1 133 DTTQGHSQINGC-TVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYS 211 (467)
T ss_dssp HHHHHHHHHTTC-EEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHH
T ss_pred cccHHHHHHcCC-eeeecccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHH
Confidence 888888888898 787765421 11235689999998875422 2222333344555442 7899
Q ss_pred HhhcCeEEEeeCC
Q psy6266 176 MVDKHHVYLLRSG 188 (218)
Q Consensus 176 l~~~~~i~ii~D~ 188 (218)
+|++|+++++.|+
T Consensus 212 ia~~~g~~l~~D~ 224 (467)
T d2v1pa1 212 IAKKYDIPVVMDS 224 (467)
T ss_dssp HHHHTTCCEEEEC
T ss_pred HHHHcCCEEEEec
Confidence 9999999999995
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=97.85 E-value=1.6e-05 Score=65.29 Aligned_cols=148 Identities=13% Similarity=-0.041 Sum_probs=86.6
Q ss_pred CccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHh
Q psy6266 23 KPWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRI 100 (218)
Q Consensus 23 ~~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l 100 (218)
..++++.|++|+.+ . ..+++.+ ..-+.+.|+.+++++. ..+++..++.|.|+|+++..++..+ +
T Consensus 8 P~~~~~~V~~A~~~---~--~~~~~~~~~~~~~~~~r~~l~~l~~-------~~~~~~~i~~t~s~T~~~~~~~~~l--~ 73 (361)
T d1m32a_ 8 PLTTSRTVKEAMLF---D--SCTWDDDYNIGVVEQIRQQLTALAT-------ASEGYTSVLLQGSGSYAVEAVLGSA--L 73 (361)
T ss_dssp SCCCCHHHHHTTCC---C--CCTTSHHHHTTTHHHHHHHHHHHHC-------SSSSEEEEEEESCHHHHHHHHHHHS--C
T ss_pred CCCCCHHHHHHhhh---h--ccCCCcHHHHHHHHHHHHHHHHHhC-------CCCCCEEEEECCCHHHHHHHHHHHh--h
Confidence 35678889876422 1 1222221 3457889999987663 2334433467778899999887765 4
Q ss_pred cCCCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HH
Q psy6266 101 LNYTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QV 173 (218)
Q Consensus 101 ~~gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l 173 (218)
.+++.+++....+.... ...+..+. ....+.. ................. .++..++....-+|-||. +|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~tG~~~~i~~i 149 (361)
T d1m32a_ 74 GPQDKVLIVSNGAYGARMVEMAGLMGI-AHHAYDC--GEVARPDVQAIDAILNA-DPTISHIAMVHSETTTGMLNPIDEV 149 (361)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHTC-CEEEEEC--CTTSCCCHHHHHHHHHH-CTTCCEEEEESEETTTTEECCHHHH
T ss_pred hhccccceeeehhhhhhHHHHhhhhhc-ccccccc--cccCCccchhhHHHHHh-ccCccceEEEeeecccccchhhhhh
Confidence 57777777766644322 23344444 4444433 21222233222222221 234444444455777886 79
Q ss_pred HHHhhcCeEEEeeCC
Q psy6266 174 AHMVDKHHVYLLRSG 188 (218)
Q Consensus 174 ~~l~~~~~i~ii~D~ 188 (218)
.++|++|+++++.|+
T Consensus 150 ~~~~~~~g~~~~vDa 164 (361)
T d1m32a_ 150 GALAHRYGKTYIVDA 164 (361)
T ss_dssp HHHHHHHTCEEEEEC
T ss_pred hhhhcccceeeEeec
Confidence 999999999999993
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=97.73 E-value=6.5e-05 Score=63.46 Aligned_cols=122 Identities=14% Similarity=0.103 Sum_probs=81.7
Q ss_pred ccCcCCCCcH---HHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHH
Q psy6266 45 HEYLPVLGLE---SFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFL 121 (218)
Q Consensus 45 ~~Y~~~~G~~---~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~ 121 (218)
..|+-. |.| .|-+.++++.-+ + .++.+++|+.|+..++.++ +.+||.|+++++.|+.-...++
T Consensus 50 ~~Y~R~-~nPt~~~le~~la~LEg~---------~--~a~~~~SGMaAi~~~l~~l--~~~Gd~iv~~~~~Yg~T~~l~~ 115 (391)
T d1cl1a_ 50 LFYGRR-GTLTHFSLQQAMCELEGG---------A--GCVLFPCGAAAVANSILAF--IEQGDHVLMTNTAYEPSQDFCS 115 (391)
T ss_dssp CCCTTT-CCHHHHHHHHHHHHHHTC---------S--EEEEESSHHHHHHHHHHHH--CCTTCEEEEETTSCHHHHHHHH
T ss_pred eEeECC-CChhHHHHHHHHHHHhCC---------c--cEEEeccccceeeehhhcc--cCCCCeEEEecccccchhhhhh
Confidence 346553 444 455555655432 1 2468899999999887766 6799999999999999777765
Q ss_pred Hh----CCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHhhc--CeEEEeeCCce
Q psy6266 122 NA----GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMVDK--HHVYLLRSGRI 190 (218)
Q Consensus 122 ~~----g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~~~--~~i~ii~D~r~ 190 (218)
.. |. ++..+ +. .|.+.+++++ .+++.++..-+|.|||.. ++++++++ +++.++.| -
T Consensus 116 ~~l~~~Gi-~~~~~---d~----~d~~~~~~~i---~~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vVD--n 182 (391)
T d1cl1a_ 116 KILSKLGV-TTSWF---DP----LIGADIVKHL---QPNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMID--N 182 (391)
T ss_dssp HTGGGGTC-EEEEE---CT----TCGGGGGGTC---CTTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEE--C
T ss_pred hccccccc-ccccc---cC----cccccccccc---ccccceeeecccCcccccccccHHHHHHHHhccCCcEEEEe--c
Confidence 43 33 33333 21 2445555544 355666666799999987 67777754 58999999 5
Q ss_pred eec
Q psy6266 191 NMC 193 (218)
Q Consensus 191 ~y~ 193 (218)
.+.
T Consensus 183 T~a 185 (391)
T d1cl1a_ 183 TWA 185 (391)
T ss_dssp TTT
T ss_pred ccc
Confidence 554
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.57 E-value=0.00017 Score=62.27 Aligned_cols=113 Identities=14% Similarity=0.088 Sum_probs=83.8
Q ss_pred eEEEEeccChhHHHHHHHHHHH-hc-------CC---------CeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCcc
Q psy6266 78 AFGVQTLSGTGALRVGAEFLHR-IL-------NY---------TTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRA 140 (218)
Q Consensus 78 v~~~~t~G~~~al~~~~~~l~~-l~-------~g---------d~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~ 140 (218)
-..+.|.||+++...++.+-+. .. +| =.|++++=+..+....+...|+ .++.+|. .+.+.
T Consensus 140 ~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl-~~~~v~~--d~~~~ 216 (476)
T d1js3a_ 140 GGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGV-KLKAIPS--DGKFA 216 (476)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTC-EEEEECC--CTTSC
T ss_pred CCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCc-eEEEecc--CCCCC
Confidence 3467999999987776654221 10 11 1478888888888888899999 8888887 33568
Q ss_pred ccHHHHHHHHhcC---CCCcEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 141 VDFTGMYEDLVNA---PDNSVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 141 ~d~~~~~~~l~~~---~~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
+|.+.+++.|++. ....++++-....+.||. +|+++|++|++|+..| -+|.|+
T Consensus 217 md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVD--AA~Gg~ 277 (476)
T d1js3a_ 217 MRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVD--AAYAGS 277 (476)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE--CTTGGG
T ss_pred cCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEe--cccchh
Confidence 8999999999753 122455555678899998 8999999999999999 777653
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=97.53 E-value=7.9e-05 Score=61.69 Aligned_cols=147 Identities=8% Similarity=0.050 Sum_probs=90.7
Q ss_pred CCccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH
Q psy6266 22 CKPWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR 99 (218)
Q Consensus 22 ~~~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~ 99 (218)
|...+++.|++|+.. . ..+++.+ ..-+.+.|+.+++.+.. ++..+ ++.|.|+|+++..+...+
T Consensus 24 GP~~~~~~V~~Am~~---~--~~~hr~~ef~~i~~~~r~~L~~ll~~-------~~~~~-i~~~gsgT~a~ea~~~~l-- 88 (388)
T d2ch1a1 24 GPSNCSKRVLTAMTN---T--VLSNFHAELFRTMDEVKDGLRYIFQT-------ENRAT-MCVSGSAHAGMEAMLSNL-- 88 (388)
T ss_dssp SSCCCCHHHHHHTTS---C--CCCTTCHHHHHHHHHHHHHHHHHHTC-------CCSCE-EEESSCHHHHHHHHHHHH--
T ss_pred CCCCCCHHHHHHhCc---C--CCCCCCHHHHHHHHHHHHHHHHHhCC-------CCCeE-EEEcCcHHHHHHHHHHHh--
Confidence 335678999987422 1 1122221 12234555666555532 22233 356678899999888766
Q ss_pred hcCCCeEEecCCCchhHHH--HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----H
Q psy6266 100 ILNYTTFYYSKPTWENHRL--VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----Q 172 (218)
Q Consensus 100 l~~gd~V~i~~P~y~~y~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~ 172 (218)
+.+|+++++..-.+.+... ..+..+. ..+.+.. .+....+.....+.+... +..++.....+|-||. .
T Consensus 89 ~~~~~~vl~~~~g~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~t~tG~~~~~~~ 163 (388)
T d2ch1a1 89 LEEGDRVLIAVNGIWAERAVEMSERYGA-DVRTIEG--PPDRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQPLEG 163 (388)
T ss_dssp CCTTCEEEEEESSHHHHHHHHHHHHTTC-EEEEEEC--CTTSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTT
T ss_pred ccccccccccccccccccchhhhhhhcc-ccccccc--ccccccchhhhhhhhccC--Ccceeeeeecccccccccchhh
Confidence 6789999988777766543 3445566 5555544 333456777766665542 2333444556888887 6
Q ss_pred HHHHhhcCeEEEeeCC
Q psy6266 173 VAHMVDKHHVYLLRSG 188 (218)
Q Consensus 173 l~~l~~~~~i~ii~D~ 188 (218)
+.+++++++..++.|+
T Consensus 164 i~~~~~~~~~~~~vD~ 179 (388)
T d2ch1a1 164 VGQICHQHDCLLIVDA 179 (388)
T ss_dssp HHHHHHHTTCEEEEEC
T ss_pred hcchhccccceeeeee
Confidence 8999999999999994
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=97.46 E-value=0.00075 Score=56.78 Aligned_cols=161 Identities=11% Similarity=-0.003 Sum_probs=102.6
Q ss_pred CCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC---CCCc----HHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 6 GEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP---VLGL----ESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 6 ~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~---~~G~----~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
|..++|++-=.|- | ....|.|++|..+.++. -+ .+.+. ..|. .+|-+.+++++-. +.
T Consensus 44 ~~~~~~FsSndYL---G-L~~~p~v~~a~~~al~~-yG-~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~---------e~- 107 (396)
T d2bwna1 44 KQDITVWCGNDYL---G-MGQHPVVLAAMHEALEA-VG-AGSGGTRNISGTTAYHRRLEAEIAGLHQK---------EA- 107 (396)
T ss_dssp EEEEEECSCSCTT---S-GGGCHHHHHHHHHHHHH-HC-SCCCSBTTTBCCBHHHHHHHHHHHHHTTC---------SE-
T ss_pred CeEEEEEEccccc---C-cCCCHHHHHHHHHHHHH-hC-CCccccccccCCchHHHHHHHHHHHHhCC---------Cc-
Confidence 5688898877652 2 45677888887777654 11 11222 2332 5666777777632 22
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcC-CCCc
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNA-PDNS 157 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~-~~~~ 157 (218)
+++.+.|..|...++.++....++|.|+...=.+.+....+++.++ +++.++- .|++.+++.++.. +.+.
T Consensus 108 -all~~sG~~An~~~i~~l~~~~~~d~i~~D~~~Hasi~~g~~ls~a-~~~~f~H-------nd~~~l~~l~~~~~~~~~ 178 (396)
T d2bwna1 108 -ALVFSSAYNANDATLSTLRVLFPGLIIYSDSLNHASMIEGIKRNAG-PKRIFRH-------NDVAHLRELIAADDPAAP 178 (396)
T ss_dssp -EEEESCHHHHHHHHHHHHHHHSTTCEEEEETTCCHHHHHHHHHSCC-CEEEECT-------TCHHHHHHHHHHSCTTSC
T ss_pred -eeeeecchHHHHHHHHHHhcccCCCceeehhhhhhccchhhhcccc-CceEeec-------chHHHhhhHHhhhcccCc
Confidence 3466666666555555554345789888888887777777888888 7776632 2555565555543 2344
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCCceeec
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSGRINMC 193 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~r~~y~ 193 (218)
++++...--.-+|. +|.+++++|+.+++-| ++-+
T Consensus 179 ~~iv~egvySmdGd~apl~~l~~L~~~y~~~L~vD--eAHs 217 (396)
T d2bwna1 179 KLIAFESVYSMDGDFGPIKEICDIAEEFGALTYID--EVHA 217 (396)
T ss_dssp EEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEE--CTTT
T ss_pred eeEEEEeeccCcccccccHhHHHHhhhhcceeeec--ccee
Confidence 55555555555664 8999999999999999 5543
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.44 E-value=0.00044 Score=56.97 Aligned_cols=105 Identities=12% Similarity=0.010 Sum_probs=67.1
Q ss_pred EEEeccChhHHHHHHHHHH-HhcCCCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLH-RILNYTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~-~l~~gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
++.|.|+|+++.+++..+. .+.|||+|++..-.+.... ...+..|. ....+.. .+.....+.+.+++.+.+.+.
T Consensus 60 i~~t~sgT~a~~~~~~~l~~~~~~gd~vlv~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~- 136 (382)
T d2bkwa1 60 FVLAGSGTLGWDIFASNFILSKAPNKNVLVVSTGTFSDRFADCLRSYGA-QVDVVRP-LKIGESVPLELITEKLSQNSY- 136 (382)
T ss_dssp EEEESCTTHHHHHHHHHHSCTTCSCCEEEEECSSHHHHHHHHHHHHTTC-EEEEECC-SSTTSCCCHHHHHHHHHHSCC-
T ss_pred EEEeCcHHHHHHHHHHHHHHhcCCCCceEEEEechhhhhhhhhcccccc-ccccccc-cCCCCccchhHHHHHhhhccc-
Confidence 4689999999999887652 2358999999887766543 33455565 4544432 222345577777777765322
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhc--CeEEEeeCC
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDK--HHVYLLRSG 188 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~--~~i~ii~D~ 188 (218)
.+++....+|.||. .+.+.+++ ++++++.|+
T Consensus 137 -~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~~vDa 174 (382)
T d2bkwa1 137 -GAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDA 174 (382)
T ss_dssp -SEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEEC
T ss_pred -hheeeeeccccccccccchhhhhhccccccceeeeeec
Confidence 23333455788887 56666654 468999984
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=97.44 E-value=0.00025 Score=59.76 Aligned_cols=122 Identities=14% Similarity=0.147 Sum_probs=81.0
Q ss_pred ccCcCCCCcH---HHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHH--
Q psy6266 45 HEYLPVLGLE---SFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLV-- 119 (218)
Q Consensus 45 ~~Y~~~~G~~---~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~-- 119 (218)
+.|+-. |.| .|-+.++++.-+ + ..+.+.+|+.|+..++.++ +.+||.|++++..|+.-...
T Consensus 51 ~~YsR~-~nPT~~~le~~la~LEg~---------~--~a~~~sSGmaAi~~~~l~l--~~~gd~vv~~~~~yg~t~~~~~ 116 (394)
T d1e5ea_ 51 YIYTRL-GNPTVSNLEGKIAFLEKT---------E--ACVATSSGMGAIAATVLTI--LKAGDHLISDECLYGCTHALFE 116 (394)
T ss_dssp CCBTTT-CCHHHHHHHHHHHHHHTC---------S--EEEEESSHHHHHHHHHHHH--CCTTCEEEEESCCCHHHHHHHH
T ss_pred ceecCC-CCHHHHHHHHHHHHHhCC---------c--ceeeeccchHHHHHHHHhh--cccccccccccceeehhhHhHH
Confidence 446553 444 455566655433 1 2468889999998877665 67999999999999775443
Q ss_pred --HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----HHHHHh-hcCeEEEeeCCcee
Q psy6266 120 --FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----QVAHMV-DKHHVYLLRSGRIN 191 (218)
Q Consensus 120 --~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~l~~l~-~~~~i~ii~D~r~~ 191 (218)
+...|. ++..+.. .|.+.++++++ +++.+++.=+|.|||.. ++.+.+ +++++.++.| -.
T Consensus 117 ~~~~~~gi-~~~~~d~-------~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvD--nT 183 (394)
T d1e5ea_ 117 HALTKFGI-QVDFINT-------AIPGEVKKHMK---PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD--NT 183 (394)
T ss_dssp THHHHTTC-EEEEECT-------TSTTHHHHHCC---TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEE--CT
T ss_pred HHhhccce-eeeccCC-------CCHHHHHHhhc---ccccEEEEeccCCcceeeehhhhhhhccccccCeEEEec--Cc
Confidence 344565 5555522 24566777774 45566666789999986 465655 4578999988 55
Q ss_pred ec
Q psy6266 192 MC 193 (218)
Q Consensus 192 y~ 193 (218)
+.
T Consensus 184 ~a 185 (394)
T d1e5ea_ 184 FC 185 (394)
T ss_dssp TT
T ss_pred cc
Confidence 54
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.41 E-value=7.9e-05 Score=62.85 Aligned_cols=148 Identities=19% Similarity=0.230 Sum_probs=94.8
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcC---CCC------cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLP---VLG------LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAE 95 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~---~~G------~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~ 95 (218)
.+.+.|++|....+..+ ...+|.. ..| ++.|....++.+|+ .. -+ -++..+|+.|-..++.
T Consensus 34 ~~S~~v~~a~~S~l~nk-yaeG~pg~ryy~G~~~id~iE~la~~ra~~lF~-a~-------~a-nVqp~SGs~An~av~~ 103 (405)
T d1kl1a_ 34 FVSRAVMEAQGSVLTNK-YAEGYPGRRYYGGCEYVDIVEELARERAKQLFG-AE-------HA-NVQPHSGAQANMAVYF 103 (405)
T ss_dssp CCCHHHHHHHTSGGGGC-CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHC-CS-------EE-ECCCSSHHHHHHHHHH
T ss_pred cCCHHHHHHhcCcccCc-CcCCCCCccccCCchhHHHHHHHHHHHHHHHhC-CC-------cc-eeeccCchHHHHHHHH
Confidence 46788888876555221 1111211 334 34555566677787 32 12 2477788888888888
Q ss_pred HHHHhcCCCeEEecCCCchhHHH-----HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCC--
Q psy6266 96 FLHRILNYTTFYYSKPTWENHRL-----VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNP-- 168 (218)
Q Consensus 96 ~l~~l~~gd~V~i~~P~y~~y~~-----~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NP-- 168 (218)
+| ++|||+|+..++.-+.|.. .+..... +.+.|++ +.+...+|++.+++..++..| .+++...-..|
T Consensus 104 al--l~pGD~im~l~l~~GGHlshg~~~~~~g~~~-~~~~y~~-d~~~~~ID~d~l~~~a~~~kP--klIi~G~S~y~r~ 177 (405)
T d1kl1a_ 104 TV--LEHGDTVLGMNLSHGGHLTHGSPVNFSGVQY-NFVAYGV-DPETHVIDYDDVREKARLHRP--KLIVAAASAYPRI 177 (405)
T ss_dssp HH--CCTTCEEEEECGGGTCCGGGTCTTSHHHHHS-EEEEECB-CTTTCSBCHHHHHHHHHHHCC--SEEEECCSSCCSC
T ss_pred Hh--cCCCCEEEEeecccccccccCccccccceEE-EEEEecc-chhcccccHHHHHHHHHhhCc--ceEEecccccccc
Confidence 77 7899999999998888652 1222234 5666766 455678899999998876433 34443222222
Q ss_pred cHH-HHHHHhhcCeEEEeeCC
Q psy6266 169 TAQ-QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 169 TG~-~l~~l~~~~~i~ii~D~ 188 (218)
--. .+.++|++-+.+++.|.
T Consensus 178 ~d~~~~reIad~vga~l~~D~ 198 (405)
T d1kl1a_ 178 IDFAKFREIADEVGAYLMVDM 198 (405)
T ss_dssp CCHHHHHHHHHHHTCEEEEEC
T ss_pred cChHHHHHHHhhhCCEEecch
Confidence 222 78899999999999993
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=97.40 E-value=0.00014 Score=59.65 Aligned_cols=147 Identities=14% Similarity=0.069 Sum_probs=85.6
Q ss_pred CCccCchHHHHHHHHHhhcCCCCccCcC--CCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHH
Q psy6266 22 CKPWVLPVVRQAEKELAADDSLNHEYLP--VLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHR 99 (218)
Q Consensus 22 ~~~~~~~~v~~a~~~~~~~~~~~~~Y~~--~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~ 99 (218)
|..++++.|++|+... ..+++.+ ..-+.+.|+.+++++.. +++.+ ++.|.||+++...++..+
T Consensus 25 GP~~v~~~Vl~am~~~-----~~~hr~~ef~~i~~~~r~~l~~ll~~-------~~~~~-i~~~g~gT~~~~~~~~~~-- 89 (377)
T d1vjoa_ 25 GPSNAHPSVLQAMNVS-----PVGHLDPAFLALMDEIQSLLRYVWQT-------ENPLT-IAVSGTGTAAMEATIANA-- 89 (377)
T ss_dssp SCCCCCHHHHHHHSSC-----CCCTTSHHHHHHHHHHHHHHHHHHTC-------CCSCE-EEESSCHHHHHHHHHHHH--
T ss_pred CCCCCCHHHHHHhCcC-----CCCCCCHHHHHHHHHHHHHHHHHhCC-------CCCeE-EEEcCcHHHHHHHHHHhc--
Confidence 4467899999875321 1222221 11255666666655532 22223 356777899998887765
Q ss_pred hcCCCeEEecCCCchhHHH--HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcHH-----H
Q psy6266 100 ILNYTTFYYSKPTWENHRL--VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTAQ-----Q 172 (218)
Q Consensus 100 l~~gd~V~i~~P~y~~y~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG~-----~ 172 (218)
+.+|+.+++..-.+..... ..+..+. ....+.. ......+.+.......+. ++.++.....+|-||. +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~tg~~~~i~~ 164 (377)
T d1vjoa_ 90 VEPGDVVLIGVAGYFGNRLVDMAGRYGA-DVRTISK--PWGEVFSLEELRTALETH--RPAILALVHAETSTGARQPLEG 164 (377)
T ss_dssp CCTTCEEEEEESSHHHHHHHHHHHHTTC-EEEEEEC--CTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECCCTT
T ss_pred cccccccceeeechhhhhhhhhhhhhcc-ccccccc--CCCCcccchhhhhhhhcC--cceeeeeeeeeccceeeechhh
Confidence 6789999888777665432 2233333 3333333 222344555555554432 2223333345788887 7
Q ss_pred HHHHhhcCeEEEeeCC
Q psy6266 173 VAHMVDKHHVYLLRSG 188 (218)
Q Consensus 173 l~~l~~~~~i~ii~D~ 188 (218)
+.+++++++..++.|+
T Consensus 165 i~~~~~~~g~~~~vDa 180 (377)
T d1vjoa_ 165 VGELCREFGTLLLVDT 180 (377)
T ss_dssp HHHHHHHHTCEEEEEC
T ss_pred hhhhhhhccceEEEec
Confidence 9999999999999993
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=97.37 E-value=0.00026 Score=60.20 Aligned_cols=127 Identities=10% Similarity=-0.005 Sum_probs=72.6
Q ss_pred CcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH-HHHHhCC
Q psy6266 47 YLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL-VFLNAGF 125 (218)
Q Consensus 47 Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~-~~~~~g~ 125 (218)
+.|..=+.++++.+|+++ | . ++. .+++.|++++..++..++ +.|||+|+++.=+..+-.. ...+.+.
T Consensus 62 ~~~~~~i~eae~~~A~~~-g-a-------~~a-~f~~~Gtt~~n~a~i~a~--~~~gd~Vi~~~~~H~Sv~~~~~~l~~~ 129 (462)
T d1c4ka2 62 LIHEGPAVAAEKHAARVY-N-A-------DKT-YFVLGGSSNANNTVTSAL--VSNGDLVLFDRNNHKSVYNSALAMAGG 129 (462)
T ss_dssp TTTBTHHHHHHHHHHHHT-T-C-------SEE-EEESSHHHHHHHHHHHHH--CCTTCEEEEETTCCHHHHHHHTTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh-C-C-------CeE-EEECCchHHHHHHHHHHh--cCCCCeEEecccchHHHHHHHHHHhcC
Confidence 333333678888888765 3 2 232 356667677766666655 7899999999999766443 2233344
Q ss_pred CcceeEecc-CCcC-------ccccHHHHHHHHhc------CC--CCcEEEEcccCCCCcHH-----HHHHHhhcCeEEE
Q psy6266 126 TEAREYRYW-NPEK-------RAVDFTGMYEDLVN------AP--DNSVIILHACAHNPTAQ-----QVAHMVDKHHVYL 184 (218)
Q Consensus 126 ~~~~~~~~~-~~~~-------~~~d~~~~~~~l~~------~~--~~~~iil~~~p~NPTG~-----~l~~l~~~~~i~i 184 (218)
.++..+.+ ++.. ..++.+.++..+.+ .. +..++++. .+|-+|. +|.++|+++++++
T Consensus 130 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~--~~~~~G~~~dl~~I~~ia~~~g~~l 206 (462)
T d1c4ka2 130 -RPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQ--LGTYDGTIYNAHEVVKRIGHLCDYI 206 (462)
T ss_dssp -EEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEE--SBCTTSEEECHHHHHHHHGGGBSEE
T ss_pred -CceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEE--eeeeccchhhHHHHHHHHHHcCCEE
Confidence 44443221 1111 12233333332211 01 22233332 2455675 8999999999999
Q ss_pred eeCC
Q psy6266 185 LRSG 188 (218)
Q Consensus 185 i~D~ 188 (218)
+.|+
T Consensus 207 ~vD~ 210 (462)
T d1c4ka2 207 EFDS 210 (462)
T ss_dssp EEEC
T ss_pred EEec
Confidence 9994
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.34 E-value=0.00038 Score=58.59 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=65.0
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHh----CCCcceeEeccCCcCccccHHHHHHHHhcCCC
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNA----GFTEAREYRYWNPEKRAVDFTGMYEDLVNAPD 155 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~----g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 155 (218)
++.+.+|+.|+..++. + +.+||.|++++..|+.....++.. |. ++..+ . .+.+.+++.++ +
T Consensus 73 a~~~sSGmaAi~~~l~-~--l~~gd~iv~~~~~yg~t~~~~~~~l~~~gi-~~~~~---~-----~~~~~~~~~i~---~ 137 (393)
T d1n8pa_ 73 GLAFSSGSATTATILQ-S--LPQGSHAVSIGDVYGGTHRYFTKVANAHGV-ETSFT---N-----DLLNDLPQLIK---E 137 (393)
T ss_dssp EEEESCHHHHHHHHHH-T--SCSSCEEEEESSCCHHHHHHHHHTSTTTCS-CCEEE---S-----SHHHHHHHHSC---S
T ss_pred EEEecCchhHHHhhhh-c--ccCCCeeeeeeeecccchhhhhhhhhcccc-eeEEe---e-----cchHHHHHHhh---h
Confidence 4577777888765443 2 568999999999999877776654 22 22222 1 13455666553 5
Q ss_pred CcEEEEcccCCCCcHH-----HHHHHhh----cCeEEEeeC
Q psy6266 156 NSVIILHACAHNPTAQ-----QVAHMVD----KHHVYLLRS 187 (218)
Q Consensus 156 ~~~iil~~~p~NPTG~-----~l~~l~~----~~~i~ii~D 187 (218)
++.+++.=+|.|||.. .++++++ ++++.++.|
T Consensus 138 ~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~lvVD 178 (393)
T d1n8pa_ 138 NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVD 178 (393)
T ss_dssp SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEE
T ss_pred hcceeEecCcchhhhhccchhhhhhhhhhhcccCCceEEEe
Confidence 6667777799999997 6777777 789999999
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=97.20 E-value=0.00035 Score=59.07 Aligned_cols=148 Identities=17% Similarity=0.160 Sum_probs=91.9
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcC---CCC------cHHHHHHHHHHhcCCCCCCCcCCCceEEEEeccChhHHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLP---VLG------LESFSSAATRMLLGGDASPPLREGRAFGVQTLSGTGALRVGAE 95 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~---~~G------~~~lr~aia~~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~ 95 (218)
.+.+.|++|....+..+ ...+|.. ..| ++.|....+..+|+ -. .+ -++..+|+.|-..++.
T Consensus 37 ~~S~~v~~a~~S~l~nk-YaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~-a~-------~a-nVqp~SGs~AN~av~~ 106 (416)
T d1dfoa_ 37 YTSPRVMQAQGSQLTNK-YAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFG-AD-------YA-NVQPHSGSQANFAVYT 106 (416)
T ss_dssp CCCHHHHHHHTSGGGGC-CCCEETTEESSSCCHHHHHHHHHHHHHHHHHHT-CS-------EE-ECCCSSHHHHHHHHHH
T ss_pred cCCHHHHHHhcCcccCc-ccCCCCCCcccCCChhHHHHHHHHHHHHHHHhC-CC-------cc-eeecccCccHHHHHHH
Confidence 46788888766554321 1111211 234 34555556677777 21 12 2467788888888888
Q ss_pred HHHHhcCCCeEEecCCCchhHHHH-----HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEcccCCCCcH
Q psy6266 96 FLHRILNYTTFYYSKPTWENHRLV-----FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHACAHNPTA 170 (218)
Q Consensus 96 ~l~~l~~gd~V~i~~P~y~~y~~~-----~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~p~NPTG 170 (218)
++ ++|||+|+..++.-+.|..- +..... +.+.|+. +. ...+|++.+++..++..|+-++.=...+..|.-
T Consensus 107 Al--l~pGD~Il~l~l~~GGHlshg~~~~~~g~~~-~~~~y~~-d~-~~~IDyd~l~~~a~~~kPklIi~G~S~y~r~~d 181 (416)
T d1dfoa_ 107 AL--LEPGDTVLGMNLAHGGHLTHGSPVNFSGKLY-NIVPYGI-DA-TGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVD 181 (416)
T ss_dssp HH--CCTTCEEEEECTTTTCCGGGTCTTSHHHHHS-EEEEECB-CS-SSSBCHHHHHHHHHHHCCSEEEEECSSCCSCCC
T ss_pred Hh--cCCCCeeeeccccccccccccccccccCceE-EEEeccc-CC-ccCccHHHHHHHHHHhccceEEecccccccccC
Confidence 77 78999999999998887531 122223 4555554 22 446899999998876434322222222223333
Q ss_pred H-HHHHHhhcCeEEEeeC
Q psy6266 171 Q-QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 171 ~-~l~~l~~~~~i~ii~D 187 (218)
. .+.++|.+.+.+++.|
T Consensus 182 ~~~~reiad~vga~l~~D 199 (416)
T d1dfoa_ 182 WAKMREIADSIGAYLFVD 199 (416)
T ss_dssp HHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHhcCceEEcc
Confidence 3 7899999999999999
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=97.00 E-value=0.0014 Score=55.44 Aligned_cols=180 Identities=12% Similarity=0.035 Sum_probs=96.2
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++. ..+ +.... .+...+++++.. .. ...+.+ .-
T Consensus 48 D~~G~~ylD~~~~~~~~~lG--h~hp~i~~ai~~~~~~--~~~-~~~~~---~~~~~la~~~~~-~~---~~~~~v--~f 113 (427)
T d2gsaa_ 48 DVDGNRYIDYVGTWGPAICG--HAHPEVIEALKVAMEK--GTS-FGAPC---ALENVLAEMVND-AV---PSIEMV--RF 113 (427)
T ss_dssp ETTSCEEEESSGGGTTTTTC--BTCHHHHHHHHHHHTT--CSC-CSSCC---HHHHHHHHHHHH-HS---TTCSEE--EE
T ss_pred ECCCCEEEEechhHHHHhcc--CCcHHHHHHHHHHHHh--cCc-cccch---hHHHHHHHHHHh-hC---Cccccc--cc
Confidence 35788888987664323445 3578888887776643 222 22222 334444444422 11 012343 46
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHH--------HHhCCC-cce-eEeccCC--cCccccHHHHHHHH
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVF--------LNAGFT-EAR-EYRYWNP--EKRAVDFTGMYEDL 150 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~--------~~~g~~-~~~-~~~~~~~--~~~~~d~~~~~~~l 150 (218)
+.+|++|...++++.+....-+.|+...-+|-...... ...+.- .+. ..+.... .....|++.+++.+
T Consensus 114 ~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~ 193 (427)
T d2gsaa_ 114 VNSGTEACMAVLRLMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALF 193 (427)
T ss_dssp ESSHHHHHHHHHHHHHHHHCCCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHhcCCCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHH
Confidence 77889999888886544434566777777765421110 011110 000 0000000 00123788888888
Q ss_pred hcCCCCc-EEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccCCCC
Q psy6266 151 VNAPDNS-VIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGLTTQ 198 (218)
Q Consensus 151 ~~~~~~~-~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l~~~ 198 (218)
++...+- .+++-+-..+ |-|. +|.++|++|++++|.| |+..|+-.+
T Consensus 194 ~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~D--Ev~tG~r~g 248 (427)
T d2gsaa_ 194 AENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFD--EVMTGFRIA 248 (427)
T ss_dssp TTSTTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTBTTTB
T ss_pred HhCCCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeec--cccccceec
Confidence 7542222 3333221111 2233 8999999999999999 999887444
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=96.93 E-value=0.002 Score=53.71 Aligned_cols=177 Identities=15% Similarity=0.104 Sum_probs=94.8
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcC-CCCcHHHHHHHHHHhcCCCCCCCcCCCceEE
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLP-VLGLESFSSAATRMLLGGDASPPLREGRAFG 80 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~-~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~ 80 (218)
|-..|...||+.-|.-...-| .-.|.|.+|.++.++. .. |.+ .... +.+..+++.+.. ... ...+++
T Consensus 32 ~d~dG~~ylD~~~g~~~~~lG--h~hp~v~~a~~~~~~~--~~--~~~~~~~~-~~~~~la~~l~~-~~~--~~~~~v-- 99 (387)
T d1vefa1 32 WDAEGNEYIDCVGGYGVANLG--HGNPEVVEAVKRQAET--LM--AMPQTLPT-PMRGEFYRTLTA-ILP--PELNRV-- 99 (387)
T ss_dssp EETTSCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHHH--CC--CCCTTSCC-HHHHHHHHHHHH-TSC--TTEEEE--
T ss_pred EECCCCEEEEcchhHHhhhhc--CCcHHHHHHHHHHHHh--hc--ccccccCC-chHHHHHHHhhh-hcc--ccceee--
Confidence 346788888886653323344 3466777776665543 11 222 1122 344444544432 211 111333
Q ss_pred EEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHHHHHHhCCCccee----EeccCCcC-c-cccHHHHHHHHhcCC
Q psy6266 81 VQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRLVFLNAGFTEARE----YRYWNPEK-R-AVDFTGMYEDLVNAP 154 (218)
Q Consensus 81 ~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~~~~~~g~~~~~~----~~~~~~~~-~-~~d~~~~~~~l~~~~ 154 (218)
.-+.+|++|...++++.+....-+.|+...-+|............ .+.. .|....-. . -.|.+.+++.+.+
T Consensus 100 ~f~~sGseA~e~Aik~Ar~~t~r~~ii~~~~~yHG~t~~~~~~s~-~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~~-- 176 (387)
T d1vefa1 100 FPVNSGTEANEAALKFARAHTGRKKFVAAMRGFSGRTMGSLSVTW-EPKYREPFLPLVEPVEFIPYNDVEALKRAVDE-- 176 (387)
T ss_dssp EEESSHHHHHHHHHHHHHHHHSCCEEEEETTCCCCSSHHHHHTCC-CHHHHGGGCSCSSCEEEECTTCHHHHHHHCCT--
T ss_pred ccccCchHHHHHHHHHHHhhcccceecccccCCCCCccceEeccC-CccccCCCCCCCCCceEeCCCCHHHHHHhcCC--
Confidence 477888898888887654444457787888877654433333322 2211 11100000 0 1267778777643
Q ss_pred CCcEEEEcc---c---CCCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 155 DNSVIILHA---C---AHNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 155 ~~~~iil~~---~---p~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.-..+++-+ . ..-|.+. .|.++|+++++.+|.| |+..|+
T Consensus 177 ~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D--EV~tGf 223 (387)
T d1vefa1 177 ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILD--EIQTGM 223 (387)
T ss_dssp TEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEE--CTTTTT
T ss_pred CeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEec--cccccc
Confidence 222333321 0 0112333 7999999999999999 999987
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=96.91 E-value=0.00081 Score=57.46 Aligned_cols=147 Identities=14% Similarity=0.067 Sum_probs=80.2
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcC-------------CCCcHHHHHHHHHHhcCCCCCCCcCCCceE-EEEeccChhHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLP-------------VLGLESFSSAATRMLLGGDASPPLREGRAF-GVQTLSGTGAL 90 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~-------------~~G~~~lr~aia~~~~~~~~~~~~~~~~v~-~~~t~G~~~al 90 (218)
.+++.|++|....+. ++|+. ..=++.|....+..+|+ -. ..+.. -++..+++.|.
T Consensus 38 ~~S~~v~~algS~l~-----nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~-~~-----~a~w~vNVqp~SGs~An 106 (463)
T d2a7va1 38 FCSRAALEALGSCLN-----NKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFD-LD-----PAQWGVNVQPYSGSPAN 106 (463)
T ss_dssp CCCHHHHHHHTSGGG-----TCCCCC------------CTHHHHHHHHHHHHHTT-CC-----TTTEEEECCCSSHHHHH
T ss_pred cCCHHHHHHhcchhc-----ccccCCCCCccccCCchhHHHHHHHHHHHHHHHhC-CC-----chhccCCccccccHHHH
Confidence 468888887665442 33432 12245566666778887 32 22211 13667788888
Q ss_pred HHHHHHHHHhcCCCeEEecCCCchhHHHH--------HHHhCC-CcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEE
Q psy6266 91 RVGAEFLHRILNYTTFYYSKPTWENHRLV--------FLNAGF-TEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIIL 161 (218)
Q Consensus 91 ~~~~~~l~~l~~gd~V~i~~P~y~~y~~~--------~~~~g~-~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil 161 (218)
..++.+| ++|||+|+..++.-+.|..- +...|. -+...|.. +.++..+|++.+++..++..| .+++
T Consensus 107 ~av~~al--l~pgD~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~-d~~~~~IDyd~~~~~a~~~kP--klIi 181 (463)
T d2a7va1 107 LAVYTAL--LQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKL-NPKTGLIDYNQLALTARLFRP--RLII 181 (463)
T ss_dssp HHHHHHH--CCSCEECCC-------------------------------CCB-CTTTCSBCHHHHHHHHHHHCC--SEEE
T ss_pred HHHHHHH--cCCCceEEeeccCcCcccccccccccccccceeeEeeeeeeec-cCCCCcCcHHHHHHHHhhcCC--ceEE
Confidence 8888777 78999999999988887621 111111 02233333 234456899999998876433 3444
Q ss_pred cccCCCCc--HH-HHHHHhhcCeEEEeeC
Q psy6266 162 HACAHNPT--AQ-QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 162 ~~~p~NPT--G~-~l~~l~~~~~i~ii~D 187 (218)
...-..|= -. .+.++|.+-+.+++.|
T Consensus 182 ~G~S~y~r~~d~~~~reIad~vga~l~~D 210 (463)
T d2a7va1 182 AGTSAYARLIDYARMREVCDEVKAHLLAD 210 (463)
T ss_dssp ECCSSCCSCCCHHHHHHHHHHTTCEEEEE
T ss_pred ecccccccccCHHHHHHHhhcccceEEec
Confidence 33222221 12 7899999999999999
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.60 E-value=0.0042 Score=51.98 Aligned_cols=176 Identities=11% Similarity=0.124 Sum_probs=89.8
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| ...|.|.+|.++.++.......+....=..++.+.+++. .+ .+++ .-
T Consensus 37 D~dG~~ylD~~~g~~~~~lG--h~~p~i~~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------~~~v--~~ 103 (404)
T d2byla1 37 DVEGRKYFDFLSSISAVNQG--HCHPKIVNALKSQVDKLTLTSRAFYNNVLGEYEEYITKL-FN--------YHKV--LP 103 (404)
T ss_dssp ETTCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHHTTCCCCCTTEEESSHHHHHHHHHHH-HT--------CSEE--EE
T ss_pred ECCCCEEEEecCCHHHHhhc--CCCHHHHHHHHHHHhhCCCcccccccchHHHHHHhhhhc-cc--------cccc--cc
Confidence 45788888888775433445 457788888776554311112222222233444434333 22 1344 46
Q ss_pred eccChhHHHHHHHHHHHhc-------C-CCeEEecCCCchhHHHHHHHhCCCcceeEecc---CCcC---ccccHHHHHH
Q psy6266 83 TLSGTGALRVGAEFLHRIL-------N-YTTFYYSKPTWENHRLVFLNAGFTEAREYRYW---NPEK---RAVDFTGMYE 148 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~-------~-gd~V~i~~P~y~~y~~~~~~~g~~~~~~~~~~---~~~~---~~~d~~~~~~ 148 (218)
+.+|++|...++++.+... . ...++...=+|............ .+.....+ ..+. ...|++.+++
T Consensus 104 ~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~-~~~~~~~~~p~~~~~~~~p~~d~~~l~~ 182 (404)
T d2byla1 104 MNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAISSST-DPTSYDGFGPFMPGFDIIPYNDLPALER 182 (404)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCCSHHHHTTCC-CHHHHTTSCSCCTTEEEECTTCHHHHHH
T ss_pred ccCccccchhHHHHHHHHhhhccccccccccccccCCCccccccceeccCC-CcccccCCCCCCCCeeEecccCHHHHHH
Confidence 7778888888777543211 1 23455444444432211111111 11111000 0000 0127788888
Q ss_pred HHhcCCCCcEEEEcccCCC------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 149 DLVNAPDNSVIILHACAHN------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 149 ~l~~~~~~~~iil~~~p~N------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.+... .-..+++-+-..+ |.+. +|.++|++|++.+|.| |+..||
T Consensus 183 ~l~~~-~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~D--EV~tGf 234 (404)
T d2byla1 183 ALQDP-NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIAD--EIQTGL 234 (404)
T ss_dssp HHTST-TEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEE--CTTTTT
T ss_pred hcCCC-CeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEee--cccccc
Confidence 88542 2123443221111 2222 7999999999999999 898876
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=96.51 E-value=0.0046 Score=52.09 Aligned_cols=105 Identities=12% Similarity=0.008 Sum_probs=58.4
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| .-.|.|.+|.++.++. .. |.......+-+..+++++.. .... ..+++ .-
T Consensus 37 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~--~~~~~~~~~~~~~la~~L~~-~~~~--~~~~v--~f 105 (431)
T d1zoda1 37 DADGRAILDFTSGQMSAVLG--HCHPEIVSVIGEYAGK--LD--HLFSEMLSRPVVDLATRLAN-ITPP--GLDRA--LL 105 (431)
T ss_dssp CTTCCEEEETTHHHHTCTTC--BTCHHHHHHHHHHHHH--CC--CCCTTCCCHHHHHHHHHHHH-HSCT--TCCEE--EE
T ss_pred ECCCCEEEEcccCHHhhhhc--CCCHHHHHHHHHHHhh--cc--ccccccccHHHHHHHHHHHH-hCCc--cccee--ee
Confidence 34688888886664334556 4578888887666543 12 22221222223334454422 1100 12444 47
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL 118 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~ 118 (218)
+.+|++|...++.+.+....-+.|+..+=+|.....
T Consensus 106 ~~sGseA~e~Alk~Ar~~t~r~~i~~~~~~yHG~t~ 141 (431)
T d1zoda1 106 LSTGAESNEAAIRMAKLVTGKYEIVGFAQSWHGMTG 141 (431)
T ss_dssp ESCHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSH
T ss_pred cccccchHHHHHHHHHHhcCCcceeecccccccccc
Confidence 788899988888765444445667777777666443
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=96.45 E-value=0.0037 Score=53.37 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=92.6
Q ss_pred cCchHHHHHHHHHhhcCCCCccCcC---CCC------cHHHHHHHHHHhcCCCCCCCcCCC-ceEEEEeccChhHHHHHH
Q psy6266 25 WVLPVVRQAEKELAADDSLNHEYLP---VLG------LESFSSAATRMLLGGDASPPLREG-RAFGVQTLSGTGALRVGA 94 (218)
Q Consensus 25 ~~~~~v~~a~~~~~~~~~~~~~Y~~---~~G------~~~lr~aia~~~~~~~~~~~~~~~-~v~~~~t~G~~~al~~~~ 94 (218)
.+++.|++|+-..+..+ ...+|.- ..| ++.|...-+..+|+ .. ++ .-.-++..+|+.|-..++
T Consensus 42 ~~S~~v~~algS~l~nk-YaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~-~~-----~~~~~anVqp~SGs~An~av~ 114 (470)
T d1rv3a_ 42 FASRAVLEALGSCLNNK-YSLGYPGQRYYGGTEHIDELETLCQKRALQAYG-LD-----PQCWGVNVQPYSGSPANFAVY 114 (470)
T ss_dssp CCCHHHHHHHTSGGGTC-CCCEETTEESSSCCHHHHHHHHHHHHHHHHHTT-CC-----TTTEEEECCCSSHHHHHHHHH
T ss_pred cCCHHHHHHhcchhccc-ccCCCCCccccCCchhHHHHHHHHHHHHHHHhC-CC-----hhhccccccccCCccHHHHHH
Confidence 46888888876555321 1111111 234 35555556677887 32 11 112357778888888888
Q ss_pred HHHHHhcCCCeEEecCCCchhHHHH----------HHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCcEEEEccc
Q psy6266 95 EFLHRILNYTTFYYSKPTWENHRLV----------FLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNSVIILHAC 164 (218)
Q Consensus 95 ~~l~~l~~gd~V~i~~P~y~~y~~~----------~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~iil~~~ 164 (218)
.++ +.|||+|+..+..-+.|..- +..... +.+.|++ +.+...+|++.+++..++. ++.+++...
T Consensus 115 ~al--l~pgD~im~~~l~~GGHlshg~~~~~~~~~~~~~~~-~~~~y~v-~~~~~~IDyd~l~~~a~~~--kPklIi~G~ 188 (470)
T d1rv3a_ 115 TAL--VEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFF-ESMAYKV-NPDTGYIDYDRLEENARLF--HPKLIIAGT 188 (470)
T ss_dssp HHH--TCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHS-EEEEECB-CTTTCSBCHHHHHHHHHHH--CCSEEEECC
T ss_pred HHh--cCCCCeEeeeccccCCcccccccccCCCccccccee-EeeEEEE-ecccCcccHHHHHHHHHhh--CcceEeech
Confidence 877 78999999999887766421 111123 4556666 3455678999999888764 334444332
Q ss_pred CCCCc--HH-HHHHHhhcCeEEEeeC
Q psy6266 165 AHNPT--AQ-QVAHMVDKHHVYLLRS 187 (218)
Q Consensus 165 p~NPT--G~-~l~~l~~~~~i~ii~D 187 (218)
-.+|= -. .+.++|.+-+.+++.|
T Consensus 189 S~y~r~~d~~~~reIad~vga~l~~D 214 (470)
T d1rv3a_ 189 SCYSRNLDYGRLRKIADENGAYLMAD 214 (470)
T ss_dssp SSCCSCCCHHHHHHHHHHTTCEEEEE
T ss_pred hhccccCCHHHHHHHHhccCCeEEec
Confidence 22221 12 7899999999999999
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=96.38 E-value=0.00092 Score=55.39 Aligned_cols=41 Identities=27% Similarity=0.548 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHH
Q psy6266 170 AQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDA 210 (218)
Q Consensus 170 G~~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~ 210 (218)
-.++.+|+++++|+++.++|+++++++..||+++|+||++|
T Consensus 352 ~~~~~~L~~~~~V~~~~g~Ri~~a~l~~~~i~~l~~ai~~v 392 (394)
T d2ay1a_ 352 PEQVKRIKEEFGIYMVGDSRINIAGLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCEEecCCCEEEecCCCHHHHHHHHHHHHHh
Confidence 35778888999999999999999999999999999999997
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=96.35 E-value=0.0015 Score=54.53 Aligned_cols=44 Identities=64% Similarity=1.030 Sum_probs=40.7
Q ss_pred HHHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHHcC
Q psy6266 171 QQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214 (218)
Q Consensus 171 ~~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~~~ 214 (218)
.++.+++++++|+++..+|+++++++..||+++|+||+++++..
T Consensus 368 ~~v~~L~~e~gV~~vpg~Ri~~ag~~~~~i~~~a~aI~~av~~~ 411 (412)
T d1ajsa_ 368 KQVEYLINQKHIYLLPSGRINMCGLTTKNLDYVATSIHEAVTKI 411 (412)
T ss_dssp HHHHHHHHTTCEECCTTSEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCEEEeCCCeEEeccCCHHHHHHHHHHHHHHHHhc
Confidence 57788899999999999999999999999999999999999864
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0012 Score=54.80 Aligned_cols=42 Identities=31% Similarity=0.570 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHH
Q psy6266 170 AQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211 (218)
Q Consensus 170 G~~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~ 211 (218)
..++.+|+++++|+++.+||+++++++..||+++|+||++|+
T Consensus 355 ~e~~~~L~~e~gV~~~~g~Ri~~a~l~~~~i~~~~~ai~~v~ 396 (396)
T d2q7wa1 355 KEQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAIVAVL 396 (396)
T ss_dssp HHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEECCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence 357888889999999999999999999999999999999874
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=96.00 E-value=0.0018 Score=53.81 Aligned_cols=43 Identities=28% Similarity=0.620 Sum_probs=39.5
Q ss_pred HHHHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHH
Q psy6266 170 AQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVT 212 (218)
Q Consensus 170 G~~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~ 212 (218)
..++.+|++|++|+++.++|++|++++..+|+++|+||+++++
T Consensus 359 ~e~~~~L~~e~gV~~~pg~Ris~a~~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 359 PEQVERLTKEFSIYMTKDGRISVAGVASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHHHHHHHCEECCTTCEEEGGGCCTTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEECCCcEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4577788899999999999999999999999999999999985
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=95.96 E-value=0.0023 Score=53.50 Aligned_cols=45 Identities=38% Similarity=0.595 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHHHcC
Q psy6266 170 AQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAVTSI 214 (218)
Q Consensus 170 G~~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~~~~ 214 (218)
..++.+|.++++|+++.++|+++++++..||+++++||+++++..
T Consensus 367 ~e~~~~L~~e~~V~~~~g~Ris~~g~~~~~i~~l~~ai~~v~k~~ 411 (412)
T d1yaaa_ 367 PQMVKRLEETHAVYLVASGRASIAGLNQGNVEYVAKAIDEVVRFY 411 (412)
T ss_dssp HHHHHHHHHHHCEECCTTSEEEGGGCCTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEECCCCEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 357788889999999999999999999999999999999999864
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=95.85 E-value=0.016 Score=48.71 Aligned_cols=177 Identities=10% Similarity=0.067 Sum_probs=88.3
Q ss_pred CCCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCC-----CCcHHHHHHHHHHhcCCCCCCCcCCC
Q psy6266 2 YMSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPV-----LGLESFSSAATRMLLGGDASPPLREG 76 (218)
Q Consensus 2 ~~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~-----~G~~~lr~aia~~~~~~~~~~~~~~~ 76 (218)
|...|...||+.-|.....-| .-.|.|.+|.++.++. .. |... ....++-+.+.+.... ..+
T Consensus 38 ~D~dG~~ylD~~~g~~~~~lG--h~~p~i~~Ai~~q~~~--~~--~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~ 104 (429)
T d1s0aa_ 38 ILSDGRRLVDGMSSWWAAIHG--YNHPQLNAAMKSQIDA--MS--HVMFGGITHAPAIELCRKLVAMTPQ-------PLE 104 (429)
T ss_dssp EETTSCEEEESSTTTTTCTTC--BSCHHHHHHHHHHHHH--CS--CCCCSSEECHHHHHHHHHHHHHSCT-------TCC
T ss_pred EECCCCEEEECcccHHHHhhc--CCcHHHHHHHHHHHHh--cC--CcccCCccchHHHHHHHHHHhhhcc-------Ccc
Confidence 345688888886663323445 4578888887665543 12 2211 1122333333332211 123
Q ss_pred ceEEEEeccChhHHHHHHHHHHHh-----cCCCeEEecCCCchhHHHHHHHhCCC-------------cceeEeccCC-c
Q psy6266 77 RAFGVQTLSGTGALRVGAEFLHRI-----LNYTTFYYSKPTWENHRLVFLNAGFT-------------EAREYRYWNP-E 137 (218)
Q Consensus 77 ~v~~~~t~G~~~al~~~~~~l~~l-----~~gd~V~i~~P~y~~y~~~~~~~g~~-------------~~~~~~~~~~-~ 137 (218)
++ .-+.++++|...++.+.+.. .+...|+...-+|-............ .....|.... .
T Consensus 105 ~v--~f~~sGseA~e~A~k~ar~~~~~~g~~~~~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (429)
T d1s0aa_ 105 CV--FLADSGSVAVEVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM 182 (429)
T ss_dssp EE--EEESSHHHHHHHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC
T ss_pred ee--eeccccccchhhhhhhhhheeecccccccEEEEecCCccccchhhhhhcCCccccccccCcccccccccccccccc
Confidence 43 46778888887776654322 23457888877766533222111110 0111111100 0
Q ss_pred Cc---cccHHHHHHHHhcCCCC-cEEEEcccCCC-------CcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 138 KR---AVDFTGMYEDLVNAPDN-SVIILHACAHN-------PTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 138 ~~---~~d~~~~~~~l~~~~~~-~~iil~~~p~N-------PTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
.. ..+++.+++.+.+.... ..+++-+-.++ |-+. .|.++|++|++.+|.| |+..|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~D--EV~tGf 251 (429)
T d1s0aa_ 183 DGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIAD--EIATGF 251 (429)
T ss_dssp -CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEE--CTTTTT
T ss_pred ccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehh--hccccc
Confidence 11 12455555544432222 22333221111 2344 8999999999999999 998887
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=95.82 E-value=0.0023 Score=53.06 Aligned_cols=42 Identities=38% Similarity=0.614 Sum_probs=38.4
Q ss_pred HHHHHHHhhcCeEEEeeCCceeeccCCCCCHHHHHHHHHHHH
Q psy6266 170 AQQVAHMVDKHHVYLLRSGRINMCGLTTQNLDHVAQAIHDAV 211 (218)
Q Consensus 170 G~~l~~l~~~~~i~ii~D~r~~y~~l~~~ni~~~~~a~~~~~ 211 (218)
..++.+|++|++|+++.++|+++++++..||+++++||++|+
T Consensus 356 ~e~~~~L~~e~~V~l~~g~Ri~~a~~~~~~i~~~~~ai~~v~ 397 (397)
T d3tata_ 356 AAQVDRLREEFGVYLIASGRMCVAGLNTANVQRVAKAFAAVM 397 (397)
T ss_dssp HHHHHHHTTTTCEECCSSSCCBTTSCCTTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCEEeCCCCEEEeccCCHHHHHHHHHHHHHhC
Confidence 347788889999999999999999999999999999999874
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.56 E-value=0.017 Score=49.02 Aligned_cols=86 Identities=12% Similarity=0.023 Sum_probs=45.4
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCc---cCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNH---EYLPVLGLESFSSAATRMLLGGDASPPLREGRAF 79 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~---~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~ 79 (218)
-..|...||+.-|.-...-| .-.|.|.+|.++.++. ..+ ......--..+.+.+++.+.. ... -..+++
T Consensus 49 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~ai~~q~~~--~~~~~~~~~~~~~~~~~a~~lae~l~~-~~~--~~~~~v- 120 (461)
T d1ohwa_ 49 DVDGNRMLDLYSQISSIPIG--YSHPALVKLVQQPQNV--STFINRPALGILPPENFVEKLRESLLS-VAP--KGMSQL- 120 (461)
T ss_dssp BTTSCEEEESSHHHHTCSSC--BTCHHHHHHHHCGGGH--HHHHCCCCTTTSCBTTHHHHHHHTGGG-GCC--TTCCEE-
T ss_pred ECCCCEEEEcccCHHHHhhc--CCcHHHHHHHHHHHhh--hhhcccccccccchHHHHHHHHHHHHh-hhc--cCccee-
Confidence 35688888887664333345 3466777776654422 111 111122223455666666533 111 112344
Q ss_pred EEEeccChhHHHHHHHHH
Q psy6266 80 GVQTLSGTGALRVGAEFL 97 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l 97 (218)
+-+.+|++|...++.+.
T Consensus 121 -~f~~sGseAve~Aik~A 137 (461)
T d1ohwa_ 121 -ITMACGSCSNENAFKTI 137 (461)
T ss_dssp -EEESSHHHHHHHHHHHH
T ss_pred -eeecchhhhhHHHHHHH
Confidence 46778888888777654
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.021 Score=47.77 Aligned_cols=105 Identities=7% Similarity=-0.101 Sum_probs=56.9
Q ss_pred CCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCC-cHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 4 SSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLG-LESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 4 ~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G-~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
..|...||+.-|.-...-| ...|.|.+|.++.++. .. +....+ .-+.+..+++++.. .... -..++ +.-
T Consensus 37 ~dG~~ylD~~~g~~~~~lG--h~~p~i~~ai~~q~~~--~~--~~~~~~~~~~~~~~la~~l~~-~~p~-~~~~~--v~f 106 (425)
T d1sffa_ 37 VEGREYLDFAGGIAVLNTG--HLHPKVVAAVEAQLKK--LS--HTCFQVLAYEPYLELCEIMNQ-KVPG-DFAKK--TLL 106 (425)
T ss_dssp TTCCEEEESSHHHHTCTTC--BTCHHHHHHHHHHTTT--CS--CCCTTTEECHHHHHHHHHHHH-HSSC-SSCEE--EEE
T ss_pred CCCCEEEEcCcCHHhhccc--CCcHHHHHHHHHHHhh--cC--CcccccccCcHHHHHHHHHHh-hhhh-cccce--eee
Confidence 4677788877764333445 4578888887776643 12 221111 11222333444422 1000 01123 357
Q ss_pred eccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH
Q psy6266 83 TLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL 118 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~ 118 (218)
+.+|++|...++.+.+....-+.|+...-+|.....
T Consensus 107 ~~sGseA~e~Alk~ar~~t~r~~ii~~~~~yHG~t~ 142 (425)
T d1sffa_ 107 VTTGSEAVENAVKIARAATKRSGTIAFSGAYHGRTH 142 (425)
T ss_dssp ESSHHHHHHHHHHHHHHHHTCCEEEEETTCCCCSSH
T ss_pred eccccchhhhHHHHhhhhhcccceEeecCCCcCccc
Confidence 788889888887765444445677777777766443
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=94.64 E-value=0.025 Score=45.98 Aligned_cols=97 Identities=14% Similarity=0.098 Sum_probs=57.1
Q ss_pred EEEeccChhHHHHHHHHHHHhcCCCeEEecCCC-chhHH-HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 80 GVQTLSGTGALRVGAEFLHRILNYTTFYYSKPT-WENHR-LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 80 ~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~-y~~y~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
++.+.|+++++..+...+ +.+||+|++..=. |+... .+.+..|. ++..+.. +....++.+. +... ..+
T Consensus 53 i~~~gsgT~a~e~~~~nl--~~~g~~vlv~~~G~f~~~~~~~a~~~~~-~~~~~~~--~~g~~~~~~~----~~~~-~~~ 122 (348)
T d1iuga_ 53 LILTGSGTLAMEALVKNL--FAPGERVLVPVYGKFSERFYEIALEAGL-VVERLDY--PYGDTPRPED----VAKE-GYA 122 (348)
T ss_dssp EEEESCHHHHHHHHHHHH--CCTTCEEEEEECSHHHHHHHHHHHHTTC-EEEEEEC--CTTCCCCTTT----SCCS-SCS
T ss_pred EEEeCchHHHHHHHHHhc--ccccccceeecchHHHHHHHHHHHhcCc-ccccccc--cCCCcccccc----cccc-CCC
Confidence 468889999998887755 6789988887666 54332 35566666 5665544 1112233222 1221 223
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcC--eEEEeeC
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKH--HVYLLRS 187 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~--~i~ii~D 187 (218)
.+.+ ....+.||. .+.++++++ +.+++.|
T Consensus 123 ~v~~-~h~eTstG~~~~i~~i~~~~~~~~~~~l~~vD 158 (348)
T d1iuga_ 123 GLLL-VHSETSTGALADLPALARAFKEKNPEGLVGAD 158 (348)
T ss_dssp EEEE-ESEETTTTEECCHHHHHHHHHHHCTTCEEEEE
T ss_pred eeEE-EecchhhhhhccHHHHHHHHHhhhccceeech
Confidence 3332 223455665 788888776 4677777
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=94.07 E-value=0.075 Score=43.91 Aligned_cols=175 Identities=13% Similarity=0.073 Sum_probs=77.8
Q ss_pred CCCCCceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCCcHHHHHHHHHHhcCCCCCCCcCCCceEEEE
Q psy6266 3 MSSGEIHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLGLESFSSAATRMLLGGDASPPLREGRAFGVQ 82 (218)
Q Consensus 3 ~~~~~~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~v~~~~ 82 (218)
-..|...||+.-|.....-| .-.|.|.+|.++.++. .. |....-...-.+...+.+.. . ...+.+ ..
T Consensus 35 D~dG~~ylD~~~g~~~~~lG--h~~p~v~~Ai~~q~~~--~~--~~~~~~~~~~~~~~~~~~~~-~----~~~~~v--~~ 101 (404)
T d1z7da1 35 DVNDKRYYDFLSAYSSVNQG--HCHPNILNAMINQAKN--LT--ICSRAFFSVPLGICERYLTN-L----LGYDKV--LM 101 (404)
T ss_dssp ETTCCEEEESSHHHHTTTTC--BTCHHHHHHHHHHHTT--CS--CCCTTSEEHHHHHHHHHHHH-H----HTCSEE--EE
T ss_pred ECCCCEEEEccccHHHHhhh--cCcHHHHHHHHHHHHh--CC--CcccccchHHHHHHHHhhhh-c----ccccee--ee
Confidence 35678888887764333444 3467788887665533 11 22111111222222332221 0 112333 46
Q ss_pred eccChhHHHHHHHHHHHhc--------CCCeEEecCCCchhHHHHHHHhCCCccee----EeccCCcCc---cccHHHHH
Q psy6266 83 TLSGTGALRVGAEFLHRIL--------NYTTFYYSKPTWENHRLVFLNAGFTEARE----YRYWNPEKR---AVDFTGMY 147 (218)
Q Consensus 83 t~G~~~al~~~~~~l~~l~--------~gd~V~i~~P~y~~y~~~~~~~g~~~~~~----~~~~~~~~~---~~d~~~~~ 147 (218)
+..+++|...++.+..... ....+....-+|............ .... .|.. .... .-+.+.+.
T Consensus 102 ~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~hg~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~ 179 (404)
T d1z7da1 102 MNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFSGRTLGCISAST-TKKCTSNFGPFA-PQFSKVPYDDLEALE 179 (404)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC----------------------------CEEEECTTCHHHHH
T ss_pred eccccchHHHHHHHHHHHHhhcccccccccccccccccCCCCccccccccc-ccccccCCCCCC-ccccccccchHHHHH
Confidence 6777777776665432211 112455665555543322211111 1110 0100 0000 11455565
Q ss_pred HHHhcCCCCcEEEEccc------CCCCcHH--HHHHHhhcCeEEEeeCCceeeccC
Q psy6266 148 EDLVNAPDNSVIILHAC------AHNPTAQ--QVAHMVDKHHVYLLRSGRINMCGL 195 (218)
Q Consensus 148 ~~l~~~~~~~~iil~~~------p~NPTG~--~l~~l~~~~~i~ii~D~r~~y~~l 195 (218)
..+... +-..+++=+= -.-|.+. +|.++|+++++.+|.| |+..|+
T Consensus 180 ~~~~~~-~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~D--EV~tGf 232 (404)
T d1z7da1 180 EELKDP-NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVAD--EVQTGL 232 (404)
T ss_dssp HHHTST-TEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEE--CTTTTT
T ss_pred HHhcCC-CEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEE--cCccCC
Confidence 555321 1123333110 0123443 8999999999999999 998876
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=93.77 E-value=0.012 Score=47.58 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=52.0
Q ss_pred EEeccCh-hHHHHHHHHHHHhcCCCeEEec-CCCchhHH-HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCCc
Q psy6266 81 VQTLSGT-GALRVGAEFLHRILNYTTFYYS-KPTWENHR-LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDNS 157 (218)
Q Consensus 81 ~~t~G~~-~al~~~~~~l~~l~~gd~V~i~-~P~y~~y~-~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~ 157 (218)
+.+.|++ .+..++...+ +.+|+.+++. .-.|.... .+.+..|. .+....... ....+.+.+.+.+. ...
T Consensus 70 ~~~~gs~t~~~ea~~~~l--~~~~~~~l~~~~g~~~~~~~~~~~~~g~-~~~~~~~~~--~~~~~~~~~~~~~~---~~~ 141 (361)
T d2c0ra1 70 LFIQGGASTQFAMIPMNF--LKEGQTANYVMTGSWASKALKEAKLIGD-THVAASSEA--SNYMTLPKLQEIQL---QDN 141 (361)
T ss_dssp EEESSHHHHHHHHHHHHH--CCTTCEEEEEECSHHHHHHHHHHHHHSC-EEEEEECGG--GTTCSCCCGGGCCC---CTT
T ss_pred EEECCCchHHHHHHHhcc--ccCCCceEEEeechhhhhhhhhhhhcCc-eeeeecccc--ccccchhhhhhhcc---cCc
Confidence 3444443 3444433333 5678888654 33444433 35566666 555554422 22345555544332 223
Q ss_pred EEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 158 VIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 158 ~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
...+ +|-||. ++.+++++++++++.|+
T Consensus 142 ~~~v----~~~tg~~~~~~~i~~~~~~~~al~~vDa 173 (361)
T d2c0ra1 142 AAYL----HLTSNETIEGAQFKAFPDTGSVPLIGDM 173 (361)
T ss_dssp EEEE----EEESEETTTTEECSSCCCCTTSCEEEEC
T ss_pred ceEE----EEecccceecceEEEeeccCCceEEEEe
Confidence 3332 445554 67788999999999994
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=93.28 E-value=0.037 Score=44.26 Aligned_cols=155 Identities=8% Similarity=-0.106 Sum_probs=73.2
Q ss_pred ceeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCCccCcCCCC---------cHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 8 IHCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLNHEYLPVLG---------LESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 8 ~~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~Y~~~~G---------~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
.|.|++-| ....|+.|.+|+.+-...-.....+....| +.+-|+.+++++ + .+++..
T Consensus 3 ~~~nF~pG-------P~~~p~~V~~a~~~~~~~~~~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~-~------~~~~~~ 68 (360)
T d1w23a_ 3 QVFNFNAG-------PSALPKPALERAQKELLNFNDTQMSVMELSHRSQSYEEVHEQAQNLLRELL-Q------IPNDYQ 68 (360)
T ss_dssp CCEECCSS-------SCCCCHHHHHHHHHTSSSSTTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHH-T------CCTTEE
T ss_pred ceeEeCCC-------CcCCCHHHHHHHHHHHHhhcccCccccccCcCCHHHHHHHHHHHHHHHHHh-C------CCCCCE
Confidence 35566666 356789999987763311000000000011 244555555554 3 222322
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHH--HHHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHR--LVFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~--~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
++.+.|++++...+.... ...+++.+++..-....-. ...+..+. ..+.... +.......+.+.+.+ ...
T Consensus 69 -i~~~~gt~~~~~~~~~~~-~~~~~~~v~~~~~g~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~---~~~ 140 (360)
T d1w23a_ 69 -ILFLQGGASLQFTMLPMN-LLTKGTIGNYVLTGSWSEKALKEAKLLGE-THIAAST--KANSYQSIPDFSEFQ---LNE 140 (360)
T ss_dssp -EEEESSHHHHHHHHHHHH-HCCTTCEEEEEECSHHHHHHHHHHHTTSE-EEEEEEC--GGGTSCSCCCGGGCC---CCT
T ss_pred -EEEeCCcHHHHHHHHHhh-hcccCcccceeeccchhhhhHHHHHHhhh-cceeecc--ccccccchhhhhhcc---ccc
Confidence 345555544544444333 2557888888765433322 23333443 3333322 111122222222211 122
Q ss_pred cEEEEcccCCCCcHH-----HHHHHhhcCeEEEeeCC
Q psy6266 157 SVIILHACAHNPTAQ-----QVAHMVDKHHVYLLRSG 188 (218)
Q Consensus 157 ~~iil~~~p~NPTG~-----~l~~l~~~~~i~ii~D~ 188 (218)
+...+ .|-||. .+.++|++++++++.|+
T Consensus 141 ~~~~~----~~~tg~~~~~~~i~~~~~~~g~l~ivDa 173 (360)
T d1w23a_ 141 NDAYL----HITSNNTIYGTQYQNFPEINHAPLIADM 173 (360)
T ss_dssp TEEEE----EEESEETTTTEECSSCCCCCSSCEEEEC
T ss_pred cccee----EecCCccccceeeeeccccceeeEEeec
Confidence 33332 233454 68889999999999995
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=92.56 E-value=0.012 Score=47.03 Aligned_cols=156 Identities=10% Similarity=-0.129 Sum_probs=73.2
Q ss_pred eeeeeeeEEeCCCCCccCchHHHHHHHHHhhcCCCC----ccCcCCCC------cHHHHHHHHHHhcCCCCCCCcCCCce
Q psy6266 9 HCCEIRNAYRTEECKPWVLPVVRQAEKELAADDSLN----HEYLPVLG------LESFSSAATRMLLGGDASPPLREGRA 78 (218)
Q Consensus 9 ~i~l~iG~~~~~~~~~~~~~~v~~a~~~~~~~~~~~----~~Y~~~~G------~~~lr~aia~~~~~~~~~~~~~~~~v 78 (218)
+.|++-| ...+|+.|.+|+.+...+-... ++. ..++ +.+.|+.+++++.. . ++.
T Consensus 2 ~~nF~pG-------P~~~p~~Vl~a~~~~~~~~~~~~~~~~~~-sHRs~ef~~l~~~~r~~l~~l~~~-~------~~~- 65 (360)
T d1bjna_ 2 IFNFSSG-------PAMLPAEVLKQAQQELRDWNGLGTSVMEV-SHRGKEFIQVAEEAEKDFRDLLNV-P------SNY- 65 (360)
T ss_dssp CEECCSS-------SCCCCHHHHHHHHHTSSSGGGSSSCGGGS-CTTSHHHHHHHHHHHHHHHHHHTC-C------TTE-
T ss_pred eEEeCCC-------CcCCCHHHHHHHHHHHhhhcccCcccccc-CcCCHHHHHHHHHHHHHHHHHhCC-C------CCC-
Confidence 4566555 3567999999877644220000 000 1122 45556666666543 2 221
Q ss_pred EEEEeccChhHHHHHHHHHHHhcCCCeEEecCCCchhHHH--HHHHhCCCcceeEeccCCcCccccHHHHHHHHhcCCCC
Q psy6266 79 FGVQTLSGTGALRVGAEFLHRILNYTTFYYSKPTWENHRL--VFLNAGFTEAREYRYWNPEKRAVDFTGMYEDLVNAPDN 156 (218)
Q Consensus 79 ~~~~t~G~~~al~~~~~~l~~l~~gd~V~i~~P~y~~y~~--~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 156 (218)
.++.+.|++.+...+.... ...+++.+++..-.+..... ..+..|. ..+.+..+ .+ ...+.....+.+.. ..+
T Consensus 66 ~v~~~~gs~t~~~~a~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~-~~~~~~~~~~~~~~-~~~ 140 (360)
T d1bjna_ 66 KVLFCHGGGRGQFAAVPLN-ILGDKTTADYVDAGYWAASAIKEAKKYCT-PNVFDAKV-TV-DGLRAVKPMREWQL-SDN 140 (360)
T ss_dssp EEEEESSHHHHHHHHHHHH-HCTTCCEEEEEESSHHHHHHHHHHTTTSE-EEEEECEE-EE-TTEEEECCGGGCCC-CSS
T ss_pred EEEEECCchHHHHhhhhhc-ccccccccceecccchhhhhHHHHhhcCc-cceeeccc-cC-CCcchhhhhhhhcc-CCc
Confidence 2346666666555444322 25567888877666655332 2222232 23333322 11 12222222222221 122
Q ss_pred cEEEEcccCCCCcHH--H-HHHHhhcCeEEEeeC
Q psy6266 157 SVIILHACAHNPTAQ--Q-VAHMVDKHHVYLLRS 187 (218)
Q Consensus 157 ~~iil~~~p~NPTG~--~-l~~l~~~~~i~ii~D 187 (218)
.+++. ..||-||. . ....++.+++.++.|
T Consensus 141 ~v~v~--~~~~~t~~~~~~~~i~~~~~~~~v~vD 172 (360)
T d1bjna_ 141 AAYMH--YCPNETIDGIAIDETPDFGADVVVAAD 172 (360)
T ss_dssp CSCEE--ECSEETTTTEECCCCCCCCTTCCEEEE
T ss_pred eeEEE--ecccccccCccccceecccccceeeee
Confidence 22232 35777776 1 112345677888887
|