Psyllid ID: psy6273

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH
Secondary Structure (PSIPRED)
ccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccccccccHHHHHHHHHHHccccccccccHcccccccHHHHHHHHHHHcccccccccccccccEEcccccccEcc
Coil and Loop (DISEMBL)
mtrykchacdvetKTRQALDNHilcvhtetksfacdqCVSYFKTNSALLQHKRKMHDEFVNlfscplcgevfrshqgykihh
Flexible Loop (DISEMBL)
mtrykchacdvetktrqaldNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRShqgykihh
Low Complexity Region (SEG)
MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH
Disordered region (IsUnstruct)
***YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQG*****
Disordered Region (DISOPRED)
MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGY****
Disordered Region (DISEMBL)
MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH
Disordered Region (DISPRO)
MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQG*****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q8C827	914	Zinc finger protein 62 OS	yes	N/A	0.914	0.082	0.384	4e-06
Q8NB50	900	Zinc finger protein 62 ho	yes	N/A	0.914	0.083	0.384	4e-06
Q9NQX1	630	PR domain zinc finger pro	no	N/A	0.926	0.120	0.346	1e-05
Q9CXE0	599	PR domain zinc finger pro	no	N/A	0.926	0.126	0.346	1e-05
Q4V8R6	719	Transcription factor E4F1	no	N/A	0.829	0.094	0.366	4e-05
P0CJ79	500	Zinc finger protein 888 O	no	N/A	0.926	0.152	0.367	7e-05
O60765	605	Zinc finger protein 354A	no	N/A	0.817	0.110	0.371	7e-05
Q9Z1D9	521	Zinc finger protein 394 O	no	N/A	0.817	0.128	0.357	7e-05
Q8N141	532	Zinc finger protein 82 ho	no	N/A	0.841	0.129	0.375	8e-05
Q96H86	408	Zinc finger protein 764 O	no	N/A	0.890	0.178	0.360	0.0001

>sp|Q8C827|ZFP62_MOUSE Zinc finger protein 62 OS=Mus musculus GN=Zfp62 PE=2 SV=1

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           YKC  C     +R +L NH   +H   K + C  C   F  +SAL QHKR    E    F
Sbjct: 467 YKCDVCGKAYISRSSLKNH-KGIHMGEKPYKCSYCEKSFNYSSALEQHKRIHTRE--KPF 523

Query: 64  SCPLCGEVFRSHQGYKIH 81
            C  CG+ FR++ G K+H
Sbjct: 524 GCDECGKAFRNNSGLKVH 541

May play a role in differentiating skeletal muscle.
Mus musculus (taxid: 10090)

>sp|Q8NB50|ZFP62_HUMAN Zinc finger protein 62 homolog OS=Homo sapiens GN=ZFP62 PE=2 SV=3

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 3/78 (3%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           YKC  C     +R +L NH   +H   K + C  C   F  +SAL QHKR    E    F
Sbjct: 477 YKCDVCGKAYISRSSLKNH-KGIHLGEKPYKCSYCEKSFNYSSALEQHKRIHTRE--KPF 533

Query: 64  SCPLCGEVFRSHQGYKIH 81
            C  CG+ FR++ G K+H
Sbjct: 534 GCDECGKAFRNNSGLKVH 551

May play a role in differentiating skeletal muscle.

Homo sapiens (taxid: 9606)

>sp|Q9NQX1|PRDM5_HUMAN PR domain zinc finger protein 5 OS=Homo sapiens GN=PRDM5 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct: 432 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKI- 490

Query: 64  SCPLCGEVFRSHQGYKIH 81
            CP CG+ F S    ++H
Sbjct: 491 -CPYCGQKFASSGTLRVH 507

Sequence-specific DNA-binding transcription factor. Represses transcription at least in part by recruitment of the histone methyltransferase EHMT2/G9A and histone deacetylases such as HDAC1. Regulates hematopoiesis-associated protein-coding and microRNA (miRNA) genes. May regulate the expression of proteins involved in extracellular matrix development and maintenance, including fibrillar collagens, such as COL4A1 and COL11A1, connective tissue components, such as HAPLN1, and molecules regulating cell migration and adhesion, including EDIL3 and TGFB2. May caused G2/M arrest and apoptosis in cancer cells.

Homo sapiens (taxid: 9606)

>sp|Q9CXE0|PRDM5_MOUSE PR domain zinc finger protein 5 OS=Mus musculus GN=Prdm5 PE=2 SV=2

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 2/78 (2%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct: 401 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKV- 459

Query: 64  SCPLCGEVFRSHQGYKIH 81
            CP CG+ F S    ++H
Sbjct: 460 -CPYCGQKFASSGTLRVH 476

Sequence-specific DNA-binding transcription factor. Represses transcription at least in part by recruitment of the histone methyltransferase EHMT2/G9A and histone deacetylases such as HDAC1. Regulates hematopoiesis-associated protein-coding and microRNA (miRNA) genes (By similarity). May regulate the expression of proteins involved in extracellular matrix development and maintenance, connective tissue components and molecules regulating cell migration and adhesion. May caused G2/M arrest and apoptosis in cancer cells.

Mus musculus (taxid: 10090)

>sp|Q4V8R6|E4F1_DANRE Transcription factor E4F1 OS=Danio rerio GN=e4f1 PE=2 SV=1

 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 3   RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNL 62
           RY C  C    KT   L  H+   H++ K+F C+ C + F+T  +L++HKR+  DE    
Sbjct: 135 RYVCDICAKTFKTTNILRTHMF-THSDQKNFVCEMCETAFRTKGSLIRHKRRHTDE--RP 191

Query: 63  FSCPLCGEVFR 73
           + C  CG  FR
Sbjct: 192 YRCNQCGLAFR 202

May function as a transcriptional repressor. May also function as a ubiquitin ligase. Functions in cell survival and proliferation through control of the cell cycle.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P0CJ79|ZN888_HUMAN Zinc finger protein 888 OS=Homo sapiens GN=ZNF888 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           YKC  CD   +    L  HI+ +HT  K + C++C   F  NSALL HK     E    +
Sbjct: 249 YKCKVCDKAFRHDSHLAQHIV-IHTREKPYKCNECGKTFGENSALLVHKTIHTGE--KPY 305

Query: 64  SCPLCGEVFRSHQGYKIHH 82
            C  CG+VF        HH
Sbjct: 306 KCNECGKVFNQQSNLARHH 324

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|O60765|Z354A_HUMAN Zinc finger protein 354A OS=Homo sapiens GN=ZNF354A PE=2 SV=2

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 3/70 (4%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           YKC+ C    +   +L NH   +HT  K + C++C   F  +SAL+QH+R    E    F
Sbjct: 494 YKCNECGKTFRCNSSLSNHQR-IHTGEKPYRCEECGISFGQSSALIQHRRIHTGE--KPF 550

Query: 64  SCPLCGEVFR 73
            C  CG+ FR
Sbjct: 551 KCNTCGKTFR 560

Homo sapiens (taxid: 9606)

>sp|Q9Z1D9|ZN394_MOUSE Zinc finger protein 394 OS=Mus musculus GN=Znf394 PE=2 SV=3

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 3/70 (4%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           YKC +C+   + R  L  H   +HT  K + C +C   F  ++AL++H+R    E    +
Sbjct: 327 YKCDSCEKGFRQRSDLFKHQR-IHTGEKPYQCQECGKRFSQSAALVKHQRTHTGE--KPY 383

Query: 64  SCPLCGEVFR 73
           +CP CGE FR
Sbjct: 384 ACPECGECFR 393

May be involved in transcriptional regulation.

Mus musculus (taxid: 10090)

>sp|Q8N141|ZFP82_HUMAN Zinc finger protein 82 homolog OS=Homo sapiens GN=ZFP82 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 3/72 (4%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           YKC  C    + RQ L  H   +HT  K F C +C   F+ NS+L+QH R    E    +
Sbjct: 450 YKCKECGKAFRLRQKLTLH-QSIHTGEKPFECKECRKAFRLNSSLIQHLRIHSGE--KPY 506

Query: 64  SCPLCGEVFRSH 75
            C  C + FR H
Sbjct: 507 ECKECKKAFRQH 518

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

>sp|Q96H86|ZN764_HUMAN Zinc finger protein 764 OS=Homo sapiens GN=ZNF764 PE=2 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/86 (36%), Positives = 38/86 (44%), Gaps = 13/86 (15%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           ++C  C      R AL +H L VHT  K + C  C   F  +SAL QH+R    E    F
Sbjct: 231 HRCLECGRAFTQRSALTSH-LRVHTGEKPYGCADCGRRFSQSSALYQHRRVHSGE--TPF 287

Query: 64  SCPLCGEVF----------RSHQGYK 79
            CP CG  F          R+H G K
Sbjct: 288 PCPDCGRAFAYPSDLRRHVRTHTGEK 313

May be involved in transcriptional regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
157110171	635	hypothetical protein AaeL_AAEL000753 [Ae	0.963	0.124	0.395	9e-07
170035051	508	zinc finger protein 36 [Culex quinquefas	0.939	0.151	0.371	1e-06
157113039	377	zinc finger protein [Aedes aegypti] gi|1	0.878	0.190	0.369	4e-06
242018392	9068	krueppel c2h2-type zinc finger protein,	0.963	0.008	0.317	7e-06
348537828	772	PREDICTED: transcription factor E4F1-lik	0.829	0.088	0.394	1e-05
312373246	1051	hypothetical protein AND_17694 [Anophele	0.865	0.067	0.383	3e-05
449512117	1338	PREDICTED: LOW QUALITY PROTEIN: zinc fin	0.817	0.050	0.4	3e-05
270001933	582	hypothetical protein TcasGA2_TC000840 [T	0.963	0.135	0.354	4e-05
156364497	357	predicted protein [Nematostella vectensi	0.951	0.218	0.341	5e-05
194763701	424	GF21308 [Drosophila ananassae] gi|190618	0.817	0.158	0.366	6e-05

>gi|157110171|ref|XP_001650982.1| hypothetical protein AaeL_AAEL000753 [Aedes aegypti] gi|108883933|gb|EAT48158.1| AAEL000753-PA [Aedes aegypti]

 Score = 57.4 bits (137), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 1   MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFV 60
           M R+KC+ CD      Q L NH+   HT++K FACD C   FK  + LL H  ++    V
Sbjct: 524 MVRHKCNLCDYSALNLQCLKNHLRVQHTDSKPFACDVCGKSFKLKNTLLNH--QVQHTGV 581

Query: 61  NLFSCPLCGEVFRSHQGYKIH 81
             FSC  C   F S   Y  H
Sbjct: 582 KKFSCEFCARTFASSGNYYAH 602

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170035051|ref|XP_001845385.1| zinc finger protein 36 [Culex quinquefasciatus] gi|167876843|gb|EDS40226.1| zinc finger protein 36 [Culex quinquefasciatus]

 Score = 57.0 bits (136), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           + C  C  E KT++ L++H+  VH  TK + CD C   F  N++L +HK  +H   +N F
Sbjct: 214 FLCEICAKEFKTKKQLNDHLEVVHQGTKRYKCDICNKSFTRNASLAEHKLILH-AGINQF 272

Query: 64  SCPLCGEVFRSHQGYKIH 81
           SC +CG  F      K H
Sbjct: 273 SCNICGRAFGKEDSLKTH 290

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113039|ref|XP_001657737.1| zinc finger protein [Aedes aegypti] gi|108883707|gb|EAT47932.1| AAEL000974-PA, partial [Aedes aegypti]

 Score = 55.5 bits (132), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)

Query: 1   MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFV 60
           +  + C  C  +   ++ L+NH+  VH+  ++F CD C   FKTN AL  H+R +HD+  
Sbjct: 255 IKNFSCTYCSKKFGNQRLLNNHVAGVHSRDRNFTCDTCAKRFKTNVALYNHQR-IHDDAA 313

Query: 61  NLFSCPLCGEVFR 73
             FSC  C + FR
Sbjct: 314 VKFSCTFCDKKFR 326

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018392|ref|XP_002429661.1| krueppel c2h2-type zinc finger protein, putative [Pediculus humanus corporis] gi|212514646|gb|EEB16923.1| krueppel c2h2-type zinc finger protein, putative [Pediculus humanus corporis]

 Score = 54.7 bits (130), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 28/107 (26%)

Query: 3    RYKCHACDVETKTRQALDNHIL---------CV------------------HTETKSFAC 35
            +Y C+ C   TK +Q L+ HI+         C                   HT  K F C
Sbjct: 8198 KYVCYICGYSTKRKQCLEVHIMRHEDKWVCQCTICNRGFFSYATLAQHMNSHTGEKPFTC 8257

Query: 36   DQCVSYFKTNSALLQHKRKMHDE-FVNLFSCPLCGEVFRSHQGYKIH 81
            DQC + +   + L +H RK H E + NL+SC +CG+VF   + Y +H
Sbjct: 8258 DQCGANYSNYNTLWKHSRKFHPELYNNLYSCKICGKVFMKEKSYHLH 8304

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|348537828|ref|XP_003456395.1| PREDICTED: transcription factor E4F1-like [Oreochromis niloticus]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 41/71 (57%), Gaps = 3/71 (4%)

Query: 3   RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNL 62
           RY CH C    KT   L  H +  H++ K+F+CD C + F+T  +L++H R+  DE    
Sbjct: 153 RYICHLCKKTFKTTNILRTH-MKTHSDQKNFSCDLCGTSFRTKGSLIRHNRRHTDE--RP 209

Query: 63  FSCPLCGEVFR 73
           + C LCG+ FR
Sbjct: 210 YRCTLCGQAFR 220

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|312373246|gb|EFR21026.1| hypothetical protein AND_17694 [Anopheles darlingi]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 43/73 (58%), Gaps = 2/73 (2%)

Query: 1   MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFV 60
           +  + C  C+ +   R+ L+NHI  VH+  ++F+C+ C   FKTN AL  H R +HD+ +
Sbjct: 325 IKNFDCSFCEKKFGNRRLLNNHIANVHSRERNFSCNVCAKRFKTNVALYNHSR-VHDDKL 383

Query: 61  NLFSCPLCGEVFR 73
             FSC  C + FR
Sbjct: 384 Q-FSCRFCDKKFR 395

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449512117|ref|XP_004174960.1| PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 658-like [Taeniopygia guttata]

 Score = 52.8 bits (125), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 39/70 (55%), Gaps = 3/70 (4%)

Query: 4    YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
            Y+C  C    +TR  L  H + +HT  + + CD+C   F+T+S LL H+R   DE    F
Sbjct: 1118 YECGECGRSFRTRSKLTRHQM-IHTGERPYECDKCRKRFQTSSNLLTHQRIHTDE--RPF 1174

Query: 64   SCPLCGEVFR 73
             CP CG+ FR
Sbjct: 1175 RCPDCGKGFR 1184

Source: Taeniopygia guttata

Species: Taeniopygia guttata

Genus: Taeniopygia

Family: Estrildidae

Order: Passeriformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|270001933|gb|EEZ98380.1| hypothetical protein TcasGA2_TC000840 [Tribolium castaneum]

 Score = 52.0 bits (123), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/79 (35%), Positives = 36/79 (45%)

Query: 3   RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNL 62
           RYKC AC      +  L  H+L  HT+ K F CD+C   F T   L  H RK   E    
Sbjct: 237 RYKCQACPKGFSLQSMLHVHVLAKHTKAKPFKCDECGKSFVTKPGLKIHLRKHKTELKED 296

Query: 63  FSCPLCGEVFRSHQGYKIH 81
           + C  CG++  +  G   H
Sbjct: 297 YPCVECGKILHTRGGLTSH 315

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156364497|ref|XP_001626384.1| predicted protein [Nematostella vectensis] gi|156213258|gb|EDO34284.1| predicted protein [Nematostella vectensis]

 Score = 51.6 bits (122), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           Y+C  CD    +++ LD H+  VH + K F C +C   F     L  H R  H +     
Sbjct: 100 YQCTQCDKLFGSQEILDRHVRAVHNQEKPFKCSKCEESFGWPMQLTDHTRNTHAQVYTSK 159

Query: 64  SCPLCGEVFRSHQGYKIHH 82
            CP CG+VF +  G +I H
Sbjct: 160 ECPQCGKVF-NRDGRRITH 177

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|194763701|ref|XP_001963971.1| GF21308 [Drosophila ananassae] gi|190618896|gb|EDV34420.1| GF21308 [Drosophila ananassae]

 Score = 51.6 bits (122), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 4/71 (5%)

Query: 4   YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
           Y C  C+ +  T++ L+ H+   H   ++F CD C + F  + AL QH+RK H E    F
Sbjct: 182 YNCSHCNRKYTTQKYLNTHLRMSHPHPQAFKCDVCGATFDVDRALEQHRRKEHTE----F 237

Query: 64  SCPLCGEVFRS 74
            C +C +VF+S
Sbjct: 238 ECKICAKVFKS 248

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
UNIPROTKB|H9KZR4	371	H9KZR4 "Uncharacterized protei	0.914	0.202	0.371	5.8e-09
RGD|1594190	539	Zfp87 "zinc finger protein 87"	0.914	0.139	0.392	6.9e-09
RGD|1588700	362	Prdm5 "PR domain containing 5"	0.926	0.209	0.346	7.1e-09
UNIPROTKB|J9P2R1	450	PRDM5 "Uncharacterized protein	0.926	0.168	0.346	1.1e-08
UNIPROTKB|Q0VAI9	501	PRDM5 "PRDM5 protein" [Homo sa	0.926	0.151	0.346	1.3e-08
UNIPROTKB|F1S1T2	530	PRDM5 "Uncharacterized protein	0.926	0.143	0.346	1.4e-08
UNIPROTKB|E2RSL4	580	PRDM5 "Uncharacterized protein	0.926	0.131	0.346	1.6e-08
UNIPROTKB|F1MFG2	630	PRDM5 "Uncharacterized protein	0.926	0.120	0.346	1.8e-08
UNIPROTKB|Q9NQX1	630	PRDM5 "PR domain zinc finger p	0.926	0.120	0.346	1.8e-08
MGI|MGI:1918029	599	Prdm5 "PR domain containing 5"	0.926	0.126	0.346	2.2e-08

UNIPROTKB|H9KZR4 H9KZR4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 140 (54.3 bits), Expect = 5.8e-09, P = 5.8e-09
 Identities = 29/78 (37%), Positives = 39/78 (50%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             YKC AC+   K+   L  H    HTE + + C +C   FK+ + L QH+R    E    F
Sbjct:   261 YKCSACEKSFKSNSELKQH-QSTHTEERPYKCSECGKCFKSCADLKQHQRTHRGE--RPF 317

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP+CG+ F S    K H
Sbjct:   318 QCPVCGKHFESSSALKRH 335

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1594190 Zfp87 "zinc finger protein 87" [Rattus norvegicus (taxid:10116)]

 Score = 142 (55.0 bits), Expect = 6.9e-09, P = 6.9e-09
 Identities = 31/79 (39%), Positives = 44/79 (55%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             Y+C  C      R  L  H + +H+  K + CD C S F+T+S L +H+R +H E V L+
Sbjct:   276 YQCEECGKTFYYRSNLKGHQI-IHSGVKPYKCDVCGSMFRTSSDLSKHQR-IHAE-VKLY 332

Query:    64 SCPLCGEVFRSHQGYKIHH 82
             SC  CG+ F +H  Y I H
Sbjct:   333 SCEECGKAFSTHS-YLIRH 350

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

RGD|1588700 Prdm5 "PR domain containing 5" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 7.1e-09, P = 7.1e-09
 Identities = 27/78 (34%), Positives = 38/78 (48%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct:   217 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCSKAFVTPSVLRSHKKTHTGEKEKV- 275

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP CG+ F S    ++H
Sbjct:   276 -CPYCGQKFASSGTLRVH 292

GO:0000278 "mitotic cell cycle" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016575 "histone deacetylation" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051567 "histone H3-K9 methylation" evidence=ISO

GO:0070491 "repressing transcription factor binding" evidence=ISO

UNIPROTKB|J9P2R1 PRDM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 1.1e-08, P = 1.1e-08
 Identities = 27/78 (34%), Positives = 38/78 (48%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct:   350 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKI- 408

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP CG+ F S    ++H
Sbjct:   409 -CPYCGQKFASSGTLRVH 425

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q0VAI9 PRDM5 "PRDM5 protein" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.3e-08, P = 1.3e-08
 Identities = 27/78 (34%), Positives = 38/78 (48%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct:   401 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKI- 459

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP CG+ F S    ++H
Sbjct:   460 -CPYCGQKFASSGTLRVH 476

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1S1T2 PRDM5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 139 (54.0 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 27/78 (34%), Positives = 38/78 (48%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct:   332 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKI- 390

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP CG+ F S    ++H
Sbjct:   391 -CPYCGQKFASSGTLRVH 407

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0051567 "histone H3-K9 methylation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|E2RSL4 PRDM5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 139 (54.0 bits), Expect = 1.6e-08, P = 1.6e-08
 Identities = 27/78 (34%), Positives = 38/78 (48%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct:   381 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKI- 439

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP CG+ F S    ++H
Sbjct:   440 -CPYCGQKFASSGTLRVH 456

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|F1MFG2 PRDM5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 27/78 (34%), Positives = 38/78 (48%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct:   432 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKI- 490

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP CG+ F S    ++H
Sbjct:   491 -CPYCGQKFASSGTLRVH 507

GO:0070491 "repressing transcription factor binding" evidence=IEA

GO:0051567 "histone H3-K9 methylation" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0016575 "histone deacetylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000278 "mitotic cell cycle" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

UNIPROTKB|Q9NQX1 PRDM5 "PR domain zinc finger protein 5" [Homo sapiens (taxid:9606)]

 Score = 139 (54.0 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 27/78 (34%), Positives = 38/78 (48%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct:   432 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKI- 490

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP CG+ F S    ++H
Sbjct:   491 -CPYCGQKFASSGTLRVH 507

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0000278 "mitotic cell cycle" evidence=IMP

GO:0051567 "histone H3-K9 methylation" evidence=IDA

GO:0016575 "histone deacetylation" evidence=IMP

GO:0070491 "repressing transcription factor binding" evidence=IDA

MGI|MGI:1918029 Prdm5 "PR domain containing 5" [Mus musculus (taxid:10090)]

 Score = 138 (53.6 bits), Expect = 2.2e-08, P = 2.2e-08
 Identities = 27/78 (34%), Positives = 38/78 (48%)

Query:     4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF 63
             +KCH CD   K +  L+ H+  VH   K + C+ C   F T S L  HK+    E   + 
Sbjct:   401 FKCHHCDATFKRKDTLNVHVQVVHERHKKYRCELCNKAFVTPSVLRSHKKTHTGEKEKV- 459

Query:    64 SCPLCGEVFRSHQGYKIH 81
              CP CG+ F S    ++H
Sbjct:   460 -CPYCGQKFASSGTLRVH 476

GO:0000278 "mitotic cell cycle" evidence=ISO

GO:0000976 "transcription regulatory region sequence-specific DNA binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0016575 "histone deacetylation" evidence=ISO

GO:0043565 "sequence-specific DNA binding" evidence=ISO

GO:0044212 "transcription regulatory region DNA binding" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051567 "histone H3-K9 methylation" evidence=ISO

GO:0070491 "repressing transcription factor binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG2462|consensus	279		99.94
KOG2462|consensus	279		99.93
KOG3623|consensus	1007		99.8
KOG3576|consensus	267		99.7
KOG3623|consensus	1007		99.64
KOG1074|consensus	958		99.61
PHA00733	128	hypothetical protein	99.48
KOG3576|consensus	267		99.44
PHA02768	55	hypothetical protein; Provisional	99.4
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	99.31
KOG1074|consensus	958		99.28
KOG3608|consensus	467		99.27
KOG3608|consensus	467		99.26
PHA02768	55	hypothetical protein; Provisional	99.2
PLN03086	567	PRLI-interacting factor K; Provisional	99.14
PHA00733	128	hypothetical protein	99.13
KOG3993|consensus	500		98.98
PLN03086	567	PRLI-interacting factor K; Provisional	98.96
PHA00732	79	hypothetical protein	98.87
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	98.87
PHA00616	44	hypothetical protein	98.86
PHA00616	44	hypothetical protein	98.79
COG5189	423	SFP1 Putative transcriptional repressor regulating	98.77
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.73
PHA00732	79	hypothetical protein	98.71
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	98.41
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.41
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	98.34
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	98.24
KOG3993|consensus	500		98.24
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.21
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	98.06
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	98.02
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	97.93
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.89
PRK04860	160	hypothetical protein; Provisional	97.89
smart00355	26	ZnF_C2H2 zinc finger.	97.69
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	97.59
smart00355	26	ZnF_C2H2 zinc finger.	97.57
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	97.39
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.39
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	97.39
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	97.25
PRK04860	160	hypothetical protein; Provisional	97.22
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	96.43
KOG2893|consensus	341		96.25
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	96.03
COG5189	423	SFP1 Putative transcriptional repressor regulating	95.83
KOG1146|consensus	1406		95.83
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	95.83
COG2888	61	Predicted Zn-ribbon RNA-binding protein with a fun	95.4
KOG2186|consensus	276		95.14
PF13717	36	zinc_ribbon_4: zinc-ribbon domain	95.07
TIGR02098	38	MJ0042_CXXC MJ0042 family finger-like domain. This	95.06
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	94.94
KOG1146|consensus	1406		94.83
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	94.76
cd00350	33	rubredoxin_like Rubredoxin_like; nonheme iron bind	94.69
COG1592	166	Rubrerythrin [Energy production and conversion]	94.62
COG0068	750	HypF Hydrogenase maturation factor [Posttranslatio	94.57
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	94.41
COG5048	467	FOG: Zn-finger [General function prediction only]	94.33
KOG4173|consensus	253		94.29
COG4049	65	Uncharacterized protein containing archaeal-type C	94.22
cd00729	34	rubredoxin_SM Rubredoxin, Small Modular nonheme ir	94.05
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	93.27
KOG2186|consensus	276		92.94
KOG2482|consensus	423		92.84
PF08790	28	zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IP	92.76
PRK14890	59	putative Zn-ribbon RNA-binding protein; Provisiona	92.68
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	92.31
smart00531	147	TFIIE Transcription initiation factor IIE.	92.3
PRK06266	178	transcription initiation factor E subunit alpha; V	92.27
TIGR02300	129	FYDLN_acid conserved hypothetical protein TIGR0230	91.77
PF07754	24	DUF1610: Domain of unknown function (DUF1610); Int	91.42
COG5048	467	FOG: Zn-finger [General function prediction only]	91.26
PHA00626	59	hypothetical protein	91.11
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	90.82
smart00659	44	RPOLCX RNA polymerase subunit CX. present in RNA p	90.72
KOG2893|consensus	341		90.45
PF13451	49	zf-trcl: Probable zinc-binding domain	90.37
PF02176	60	zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A	90.04
PRK00464	154	nrdR transcriptional regulator NrdR; Validated	89.72
KOG2482|consensus	423		88.97
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	88.63
KOG2593|consensus	436		87.52
PRK09678	72	DNA-binding transcriptional regulator; Provisional	87.51
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	87.19
smart00834	41	CxxC_CXXC_SSSS Putative regulatory protein. CxxC_C	86.94
COG1997	89	RPL43A Ribosomal protein L37AE/L43A [Translation,	86.74
PF04423	54	Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IP	86.47
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	86.42
PF03604	32	DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa	85.51
KOG4173|consensus	253		85.44
PF12013	109	DUF3505: Protein of unknown function (DUF3505); In	85.42
PF04959	214	ARS2: Arsenite-resistance protein 2; InterPro: IPR	85.39
PF09723	42	Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR0134	85.2
PF01428	43	zf-AN1: AN1-like Zinc finger; InterPro: IPR000058	84.94
smart00734	26	ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18	83.63
COG1996	49	RPC10 DNA-directed RNA polymerase, subunit RPC10 (	83.28
TIGR00143	711	hypF [NiFe] hydrogenase maturation protein HypF. A	82.12
PF10013	42	DUF2256: Uncharacterized protein conserved in bact	82.12
KOG2231|consensus	669		81.88
PF01927	147	Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T	81.78
TIGR02605	52	CxxC_CxxC_SSSS putative regulatory protein, FmdB f	81.56
KOG3408|consensus	129		81.49
smart00614	50	ZnF_BED BED zinc finger. DNA-binding domain in chr	80.86
PF15269	54	zf-C2H2_7: Zinc-finger	80.83
PF02892	45	zf-BED: BED zinc finger; InterPro: IPR003656 Zinc	80.81
KOG1280|consensus	381		80.72

>KOG2462|consensus

Probab=99.94  E-value=2.8e-28  Score=126.83  Aligned_cols=77  Identities=29%  Similarity=0.520  Sum_probs=70.3

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      |++|.+||+.|.....|+.|++ +|+||+||.|+.|++.|.++++|+.||++|.+.  ++|.|..|+++|+..+.|.+|.
T Consensus       187 ~c~C~iCGKaFSRPWLLQGHiR-THTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~--K~~qC~~C~KsFsl~SyLnKH~  263 (279)
T KOG2462|consen  187 PCECGICGKAFSRPWLLQGHIR-THTGEKPFSCPHCGKAFADRSNLRAHMQTHSDV--KKHQCPRCGKSFALKSYLNKHS  263 (279)
T ss_pred             CcccccccccccchHHhhcccc-cccCCCCccCCcccchhcchHHHHHHHHhhcCC--ccccCcchhhHHHHHHHHHHhh
Confidence            6789999999999999999998 999999999999999999999999999999988  8999999999999999888874

>KOG2462|consensus

Probab=99.93  E-value=1e-26  Score=121.02  Aligned_cols=76  Identities=30%  Similarity=0.551  Sum_probs=71.9

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      +.+.|++|++.|.+...|..|++ +|.  .+++|.+||+.|..++-|+-|+++|+||  |||.|+.|+++|+.+++|+.|
T Consensus       160 ka~~C~~C~K~YvSmpALkMHir-TH~--l~c~C~iCGKaFSRPWLLQGHiRTHTGE--KPF~C~hC~kAFADRSNLRAH  234 (279)
T KOG2462|consen  160 KAFSCKYCGKVYVSMPALKMHIR-THT--LPCECGICGKAFSRPWLLQGHIRTHTGE--KPFSCPHCGKAFADRSNLRAH  234 (279)
T ss_pred             ccccCCCCCceeeehHHHhhHhh-ccC--CCcccccccccccchHHhhcccccccCC--CCccCCcccchhcchHHHHHH
Confidence            55789999999999999999998 886  5789999999999999999999999999  999999999999999999998


Q ss_pred             C
Q psy6273          82 H   82 (82)
Q Consensus        82 ~   82 (82)
                      |
T Consensus       235 m  235 (279)
T KOG2462|consen  235 M  235 (279)
T ss_pred             H
Confidence            6

>KOG3623|consensus

Probab=99.80  E-value=1.3e-20  Score=108.92  Aligned_cols=77  Identities=29%  Similarity=0.579  Sum_probs=74.1

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .|.|..|+++|--.+.|.+|.- -|+|.+||+|.+|.++|..+-.|..|++.|.||  +||.|..|++.|+...+..+||
T Consensus       894 myaCDqCDK~FqKqSSLaRHKY-EHsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGE--KPfQCdKClKRFSHSGSYSQHM  970 (1007)
T KOG3623|consen  894 MYACDQCDKAFQKQSSLARHKY-EHSGQRPYQCIICKKAFKHKHHLTEHKRLHSGE--KPFQCDKCLKRFSHSGSYSQHM  970 (1007)
T ss_pred             cchHHHHHHHHHhhHHHHHhhh-hhcCCCCcccchhhHhhhhhhhhhhhhhhccCC--CcchhhhhhhhcccccchHhhh
Confidence            5889999999999999999987 999999999999999999999999999999999  9999999999999999988886

>KOG3576|consensus

Probab=99.70  E-value=7.4e-19  Score=89.05  Aligned_cols=76  Identities=22%  Similarity=0.538  Sum_probs=70.4

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      .|.|.+|++.|....-|.+|++ -|...+.+-|..|++.|.+.-.|.+|+++|+|-  +||+|..|+++|.+.-+|..|
T Consensus       117 ~ftCrvCgK~F~lQRmlnrh~k-ch~~vkr~lct~cgkgfndtfdlkrh~rthtgv--rpykc~~c~kaftqrcslesh  192 (267)
T KOG3576|consen  117 SFTCRVCGKKFGLQRMLNRHLK-CHSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGV--RPYKCSLCEKAFTQRCSLESH  192 (267)
T ss_pred             eeeeehhhhhhhHHHHHHHHhh-hccHHHHHHHhhccCcccchhhhhhhhccccCc--cccchhhhhHHHHhhccHHHH
Confidence            4789999999999999999998 899889999999999999999999999999999  999999999999998887765

>KOG3623|consensus

Probab=99.64  E-value=1.2e-16  Score=92.91  Aligned_cols=77  Identities=29%  Similarity=0.615  Sum_probs=69.7

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCC-------------CCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccc
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTE-------------TKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCG   69 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~-------------~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~   69 (82)
                      .|.|..|..+|.....|.+|+. .|..             .+-|.|..|+++|..+-.|..|++.|.||  +||.|+.|+
T Consensus       240 nfsC~lCsytFAyRtQLErhm~-~hkpg~dqa~sltqsa~lRKFKCtECgKAFKfKHHLKEHlRIHSGE--KPfeCpnCk  316 (1007)
T KOG3623|consen  240 NFSCMLCSYTFAYRTQLERHMQ-LHKPGGDQAISLTQSALLRKFKCTECGKAFKFKHHLKEHLRIHSGE--KPFECPNCK  316 (1007)
T ss_pred             CCcchhhhhhhhhHHHHHHHHH-hhcCCCcccccccchhhhccccccccchhhhhHHHHHhhheeecCC--CCcCCcccc
Confidence            4789999999999999999987 6642             24589999999999999999999999999  999999999


Q ss_pred             ccccCcccccccC
Q psy6273          70 EVFRSHQGYKIHH   82 (82)
Q Consensus        70 ~~f~~~~~l~~H~   82 (82)
                      +.|+...++..||
T Consensus       317 KRFSHSGSySSHm  329 (1007)
T KOG3623|consen  317 KRFSHSGSYSSHM  329 (1007)
T ss_pred             cccccCCcccccc
Confidence            9999999888876

>KOG1074|consensus

Probab=99.61  E-value=1.1e-16  Score=93.85  Aligned_cols=52  Identities=27%  Similarity=0.420  Sum_probs=26.7

Q ss_pred             cccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhc
Q psy6273           4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ..|-.|-+...-...|+.|++ +|+|++||+|.+|+++|..+.+|..|+..|.
T Consensus       606 NqCiiC~rVlSC~saLqmHyr-tHtGERPFkCKiCgRAFtTkGNLkaH~~vHk  657 (958)
T KOG1074|consen  606 NQCIICLRVLSCPSALQMHYR-THTGERPFKCKICGRAFTTKGNLKAHMSVHK  657 (958)
T ss_pred             cceeeeeecccchhhhhhhhh-cccCcCccccccccchhccccchhhcccccc
Confidence            344445555555555555554 5555555555555555555555555554443

>PHA00733 hypothetical protein

Probab=99.48  E-value=7.8e-15  Score=70.79  Aligned_cols=77  Identities=25%  Similarity=0.420  Sum_probs=62.0

Q ss_pred             CCcccCcCCccccCHHHHHhH--HH--hhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccc
Q psy6273           2 TRYKCHACDVETKTRQALDNH--IL--CVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQG   77 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h--~~--~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~   77 (82)
                      |++.|.+|.+.+.....|..+  ..  ..+.+..+|.|+.|++.|.....|..|++.+  +  .+|.|..|++.|.....
T Consensus        39 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~h--~--~~~~C~~CgK~F~~~~s  114 (128)
T PHA00733         39 KRLIRAVVKTLIYNPQLLDESSYLYKLLTSKAVSPYVCPLCLMPFSSSVSLKQHIRYT--E--HSKVCPVCGKEFRNTDS  114 (128)
T ss_pred             hhHHHHHHhhhccChhhhcchHHHHhhcccCCCCCccCCCCCCcCCCHHHHHHHHhcC--C--cCccCCCCCCccCCHHH
Confidence            567788888888877766655  11  1234578999999999999999999999876  3  67999999999999999


Q ss_pred             ccccC
Q psy6273          78 YKIHH   82 (82)
Q Consensus        78 l~~H~   82 (82)
                      |..|+
T Consensus       115 L~~H~  119 (128)
T PHA00733        115 TLDHV  119 (128)
T ss_pred             HHHHH
Confidence            98774

>KOG3576|consensus

Probab=99.44  E-value=3.5e-14  Score=72.36  Aligned_cols=74  Identities=24%  Similarity=0.484  Sum_probs=62.4

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC---------CCCeeecCcccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE---------FVNLFSCPLCGEVF   72 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~---------~~~~~~C~~C~~~f   72 (82)
                      |.+-|..||+.|.+-.+|++|.+ +|+|.+||.|..|++.|...-+|..|++.-+|.         ..+-|.|..||..-
T Consensus       144 kr~lct~cgkgfndtfdlkrh~r-thtgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~  222 (267)
T KOG3576|consen  144 KRHLCTFCGKGFNDTFDLKRHTR-THTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTS  222 (267)
T ss_pred             HHHHHhhccCcccchhhhhhhhc-cccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCC
Confidence            34678999999999999999999 999999999999999999999999998765431         12789999999765


Q ss_pred             cCcc
Q psy6273          73 RSHQ   76 (82)
Q Consensus        73 ~~~~   76 (82)
                      ....
T Consensus       223 ~~~e  226 (267)
T KOG3576|consen  223 ERPE  226 (267)
T ss_pred             CChh
Confidence            4443

>PHA02768 hypothetical protein; Provisional

Probab=99.40  E-value=1.6e-13  Score=56.58  Aligned_cols=44  Identities=16%  Similarity=0.394  Sum_probs=36.7

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYK   79 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~   79 (82)
                      .|.|+.|++.|...++|..|++.|+    ++++|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~H~----k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRKHN----TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHhcC----CcccCCcccceecccceeE
Confidence            4788899999999999999999888    5788888999888777663

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=99.31  E-value=2.8e-12  Score=45.90  Aligned_cols=26  Identities=35%  Similarity=0.811  Sum_probs=23.0

Q ss_pred             HHHHHHHHhcCCCCCeeecCcccccccC
Q psy6273          47 ALLQHKRKMHDEFVNLFSCPLCGEVFRS   74 (82)
Q Consensus        47 ~l~~h~~~~~~~~~~~~~C~~C~~~f~~   74 (82)
                      +|..|++.|+++  +||.|+.|++.|..
T Consensus         1 ~l~~H~~~H~~~--k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRTHTGE--KPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHHHSSS--SSEEESSSSEEESS
T ss_pred             CHHHHhhhcCCC--CCCCCCCCcCeeCc
Confidence            578999999999  99999999999863

...

>KOG1074|consensus

Probab=99.28  E-value=1.4e-12  Score=77.22  Aligned_cols=50  Identities=30%  Similarity=0.572  Sum_probs=47.6

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .+-+|..|.+...-+++|+.|.++|+||  +||+|+.||++|..+.+|+.||
T Consensus       604 dPNqCiiC~rVlSC~saLqmHyrtHtGE--RPFkCKiCgRAFtTkGNLkaH~  653 (958)
T KOG1074|consen  604 DPNQCIICLRVLSCPSALQMHYRTHTGE--RPFKCKICGRAFTTKGNLKAHM  653 (958)
T ss_pred             CccceeeeeecccchhhhhhhhhcccCc--Cccccccccchhccccchhhcc
Confidence            4678999999999999999999999999  9999999999999999999996

>KOG3608|consensus

Probab=99.27  E-value=5.3e-12  Score=69.08  Aligned_cols=79  Identities=24%  Similarity=0.570  Sum_probs=50.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHHHHhc-CCCCCeeecCcccccccCccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMH-DEFVNLFSCPLCGEVFRSHQG   77 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~-~~~~~~~~C~~C~~~f~~~~~   77 (82)
                      +|||+|..|+..+.....|..|.. .|+ +..|.|..  |...+.+...+.+|++-+. |....+|.|-.|.+.|....+
T Consensus       290 dkpfKCd~Cd~~c~~esdL~kH~~-~HS-~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~ft~G~~  367 (467)
T KOG3608|consen  290 DKPFKCDECDTRCVRESDLAKHVQ-VHS-KTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFFTSGKS  367 (467)
T ss_pred             CCCccccchhhhhccHHHHHHHHH-hcc-ccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhhccchh
Confidence            356666666666666666666665 555 44566633  6666666666666666543 444456777777777777777


Q ss_pred             cccc
Q psy6273          78 YKIH   81 (82)
Q Consensus        78 l~~H   81 (82)
                      |.+|
T Consensus       368 L~~H  371 (467)
T KOG3608|consen  368 LSAH  371 (467)
T ss_pred             HHHH
Confidence            7665

>KOG3608|consensus

Probab=99.26  E-value=4.9e-12  Score=69.21  Aligned_cols=76  Identities=22%  Similarity=0.459  Sum_probs=51.9

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      .+|.|..|-+.|.++..|..|+. .|.  ..|.|+.|+-+...+++|..|+++.+.+ .+||+|..|...|...+.|.+|
T Consensus       236 n~fqC~~C~KrFaTeklL~~Hv~-rHv--n~ykCplCdmtc~~~ssL~~H~r~rHs~-dkpfKCd~Cd~~c~~esdL~kH  311 (467)
T KOG3608|consen  236 NSFQCAQCFKRFATEKLLKSHVV-RHV--NCYKCPLCDMTCSSASSLTTHIRYRHSK-DKPFKCDECDTRCVRESDLAKH  311 (467)
T ss_pred             CchHHHHHHHHHhHHHHHHHHHH-Hhh--hcccccccccCCCChHHHHHHHHhhhcc-CCCccccchhhhhccHHHHHHH
Confidence            35677777777777777777766 453  3467777777777777777777764433 2777777777777777777665

>PHA02768 hypothetical protein; Provisional

Probab=99.20  E-value=8.5e-12  Score=51.53  Aligned_cols=43  Identities=16%  Similarity=0.386  Sum_probs=38.2

Q ss_pred             cccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHH
Q psy6273           4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALL   49 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~   49 (82)
                      |+|+.||+.|...++|..|++ +|.  +++.|..|++.|...+.|.
T Consensus         6 y~C~~CGK~Fs~~~~L~~H~r-~H~--k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          6 YECPICGEIYIKRKSMITHLR-KHN--TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             cCcchhCCeeccHHHHHHHHH-hcC--CcccCCcccceecccceeE
Confidence            789999999999999999999 887  6889999999988776553

>PLN03086 PRLI-interacting factor K; Provisional

Probab=99.14  E-value=7e-11  Score=68.44  Aligned_cols=64  Identities=19%  Similarity=0.589  Sum_probs=51.7

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFR   73 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~   73 (82)
                      +.+.|+.|++.|. ...|..|+. .+.  .++.|+ |+..+ ....|..|+..+.++  +++.|..|+..|.
T Consensus       452 ~H~~C~~Cgk~f~-~s~LekH~~-~~H--kpv~Cp-Cg~~~-~R~~L~~H~~thCp~--Kpi~C~fC~~~v~  515 (567)
T PLN03086        452 NHVHCEKCGQAFQ-QGEMEKHMK-VFH--EPLQCP-CGVVL-EKEQMVQHQASTCPL--RLITCRFCGDMVQ  515 (567)
T ss_pred             cCccCCCCCCccc-hHHHHHHHH-hcC--CCccCC-CCCCc-chhHHHhhhhccCCC--CceeCCCCCCccc
Confidence            4567899999885 677899987 663  678898 98654 568888999888888  8999999998884

>PHA00733 hypothetical protein

Probab=99.13  E-value=1.7e-10  Score=55.85  Aligned_cols=54  Identities=26%  Similarity=0.488  Sum_probs=47.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      .+||.|+.|++.|.....|..|+. .+  ..++.|..|++.|.....|..|+...++
T Consensus        71 ~kPy~C~~Cgk~Fss~s~L~~H~r-~h--~~~~~C~~CgK~F~~~~sL~~H~~~~h~  124 (128)
T PHA00733         71 VSPYVCPLCLMPFSSSVSLKQHIR-YT--EHSKVCPVCGKEFRNTDSTLDHVCKKHN  124 (128)
T ss_pred             CCCccCCCCCCcCCCHHHHHHHHh-cC--CcCccCCCCCCccCCHHHHHHHHHHhcC
Confidence            368999999999999999999987 65  3578999999999999999999887654

>KOG3993|consensus

Probab=98.98  E-value=2.5e-11  Score=67.62  Aligned_cols=78  Identities=26%  Similarity=0.520  Sum_probs=64.7

Q ss_pred             cccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCC------------------------
Q psy6273           4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEF------------------------   59 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~------------------------   59 (82)
                      |.|..|...|.+...|.+|.. ...-...|.|+.|++.|.-+.+|..|.+.|....                        
T Consensus       268 yiCqLCK~kYeD~F~LAQHrC-~RIV~vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~  346 (500)
T KOG3993|consen  268 YICQLCKEKYEDAFALAQHRC-PRIVHVEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAE  346 (500)
T ss_pred             HHHHHHHHhhhhHHHHhhccC-CeeEEeeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhcc
Confidence            678889999999999999976 6666667999999999999999999998874210                        


Q ss_pred             -------CCeeecCcccccccCcccccccC
Q psy6273          60 -------VNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        60 -------~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                             ..-|.|..|++.|.....|++|+
T Consensus       347 rsg~dss~gi~~C~~C~KkFrRqAYLrKHq  376 (500)
T KOG3993|consen  347 RSGDDSSSGIFSCHTCGKKFRRQAYLRKHQ  376 (500)
T ss_pred             ccCCcccCceeecHHhhhhhHHHHHHHHhH
Confidence                   12489999999999999999984

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.96  E-value=8.7e-10  Score=64.06  Aligned_cols=68  Identities=15%  Similarity=0.356  Sum_probs=56.5

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcC----------cHHHHHHHHHhcCCCCCeeecCccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKT----------NSALLQHKRKMHDEFVNLFSCPLCGEV   71 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~----------~~~l~~h~~~~~~~~~~~~~C~~C~~~   71 (82)
                      +|+.|+ |+..+ ....|..|+. ++...+++.|+.|+..+..          .+.|..|+... |.  +++.|..||+.
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~-thCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~C-G~--rt~~C~~Cgk~  550 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQA-STCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESIC-GS--RTAPCDSCGRS  550 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhh-ccCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhc-CC--cceEccccCCe
Confidence            578899 99755 6789999987 8999999999999998842          34788998885 67  89999999988


Q ss_pred             ccCc
Q psy6273          72 FRSH   75 (82)
Q Consensus        72 f~~~   75 (82)
                      +..+
T Consensus       551 Vrlr  554 (567)
T PLN03086        551 VMLK  554 (567)
T ss_pred             eeeh
Confidence            8654

>PHA00732 hypothetical protein

Probab=98.87  E-value=1.3e-09  Score=48.67  Aligned_cols=48  Identities=31%  Similarity=0.430  Sum_probs=36.4

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhc
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ||.|..|++.|.....|..|++..|.   ++.|+.|++.|.   .+..|..+..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~---~~~C~~CgKsF~---~l~~H~~~~~   48 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT---LTKCPVCNKSYR---RLNQHFYSQY   48 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC---CCccCCCCCEeC---ChhhhhcccC
Confidence            68899999999999999999862244   357999999886   4666664443

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=98.87  E-value=8.9e-10  Score=39.31  Aligned_cols=25  Identities=32%  Similarity=0.647  Sum_probs=22.8

Q ss_pred             HHHhHHHhhCCCCCccccccchhhhc
Q psy6273          18 ALDNHILCVHTETKSFACDQCVSYFK   43 (82)
Q Consensus        18 ~l~~h~~~~~~~~~~~~c~~c~~~~~   43 (82)
                      +|..|++ +|+++++|.|+.|++.|.
T Consensus         1 ~l~~H~~-~H~~~k~~~C~~C~k~F~   25 (26)
T PF13465_consen    1 NLRRHMR-THTGEKPYKCPYCGKSFS   25 (26)
T ss_dssp             HHHHHHH-HHSSSSSEEESSSSEEES
T ss_pred             CHHHHhh-hcCCCCCCCCCCCcCeeC
Confidence            5789998 999999999999999885

...

>PHA00616 hypothetical protein

Probab=98.86  E-value=1.5e-09  Score=42.96  Aligned_cols=34  Identities=18%  Similarity=0.513  Sum_probs=20.6

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      +++|+.||+.|...+.+..|++.++++  +++.|..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~~hg~--~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLSVHKQ--NKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHHhcCC--CccceeE
Confidence            355666666666666666666666666  5665543

>PHA00616 hypothetical protein

Probab=98.79  E-value=4.3e-09  Score=41.65  Aligned_cols=34  Identities=15%  Similarity=0.389  Sum_probs=31.4

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ||.|+.||+.|.....|..|++ .+++++++.++.
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r-~~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLL-SVHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHH-HhcCCCccceeE
Confidence            7899999999999999999998 899999988764

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=98.77  E-value=2e-09  Score=58.53  Aligned_cols=69  Identities=22%  Similarity=0.467  Sum_probs=42.0

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccc
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYK   79 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~   79 (82)
                      |||+|++  |++.+.....|+-|++..|...+..+-+.          -..+.-+-..+  +||.|+.|++.+.....|+
T Consensus       348 KpykCpV~gC~K~YknqnGLKYH~lhGH~~~~~~~~p~----------p~~~~~F~~~~--KPYrCevC~KRYKNlNGLK  415 (423)
T COG5189         348 KPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPS----------PEKMNIFSAKD--KPYRCEVCDKRYKNLNGLK  415 (423)
T ss_pred             ceecCCCCCchhhhccccchhhhhhccccCcccCCCCC----------ccccccccccC--CceeccccchhhccCccce
Confidence            6777765  77777777777777653332222211110          01111122233  8999999999999999998


Q ss_pred             ccC
Q psy6273          80 IHH   82 (82)
Q Consensus        80 ~H~   82 (82)
                      -|+
T Consensus       416 YHr  418 (423)
T COG5189         416 YHR  418 (423)
T ss_pred             ecc
Confidence            774

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.73  E-value=9.6e-08  Score=39.78  Aligned_cols=51  Identities=24%  Similarity=0.451  Sum_probs=38.9

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCC-CccccccchhhhcCcHHHHHHHHHhc
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTET-KSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~-~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      .|.|+.|++ ..+...|..|....|..+ +.+.|+.|...+.  .+|..|+..++
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVT--DNLIRHLNSQH   53 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhh--hHHHHHHHHhc
Confidence            578999999 566788999977566654 4688999987543  48888888765

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PHA00732 hypothetical protein

Probab=98.71  E-value=1.3e-08  Score=45.49  Aligned_cols=39  Identities=38%  Similarity=0.673  Sum_probs=32.7

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRS   74 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~   74 (82)
                      +|.|..|++.|....+|..|++.++.    ++.|+.|++.|..
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~H~----~~~C~~CgKsF~~   39 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRNHT----LTKCPVCNKSYRR   39 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcccC----CCccCCCCCEeCC
Confidence            57899999999999999999985332    3579999999984

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=98.41  E-value=1.9e-07  Score=38.90  Aligned_cols=48  Identities=25%  Similarity=0.448  Sum_probs=35.0

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .|.|+.|++ ..+...|..|....+....+.+.|+.|...+..  +|..|+
T Consensus         2 ~f~CP~C~~-~~~~~~L~~H~~~~H~~~~~~v~CPiC~~~~~~--~l~~Hl   49 (54)
T PF05605_consen    2 SFTCPYCGK-GFSESSLVEHCEDEHRSESKNVVCPICSSRVTD--NLIRHL   49 (54)
T ss_pred             CcCCCCCCC-ccCHHHHHHHHHhHCcCCCCCccCCCchhhhhh--HHHHHH
Confidence            478999999 566788999987654432368999999876553  555553

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.41  E-value=1.7e-07  Score=32.24  Aligned_cols=21  Identities=29%  Similarity=0.695  Sum_probs=11.1

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      |.|+.|++.|.+...|..|++
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~   21 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMR   21 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHh
Confidence            345555555555555555544

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.34  E-value=3.4e-07  Score=31.45  Aligned_cols=23  Identities=30%  Similarity=0.658  Sum_probs=21.0

Q ss_pred             cccccchhhhcCcHHHHHHHHHh
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~   55 (82)
                      |.|+.|++.|.....|..|++.|
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhHC
Confidence            57999999999999999999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=98.24  E-value=1.6e-07  Score=43.45  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=0.0

Q ss_pred             ccCcCCccccCHHHHHhHHHhhC
Q psy6273           5 KCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         5 ~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      +|..|+..|.+...|..|+...|
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~H   23 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKKH   23 (100)
T ss_dssp             -----------------------
T ss_pred             Ccccccccccccccccccccccc
Confidence            48889999999999999986444

>KOG3993|consensus

Probab=98.24  E-value=8.1e-07  Score=50.30  Aligned_cols=54  Identities=22%  Similarity=0.472  Sum_probs=44.6

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCC--------------------------------CCCccccccchhhhcCcHHHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHT--------------------------------ETKSFACDQCVSYFKTNSALLQ   50 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~--------------------------------~~~~~~c~~c~~~~~~~~~l~~   50 (82)
                      -|+|++|++.|.-..||..|.++...                                .+.-|.|..|++.|.....|..
T Consensus       295 EYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrK  374 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYLRK  374 (500)
T ss_pred             eecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHHHH
Confidence            38899999999999999999875111                                1124899999999999999999


Q ss_pred             HHHHhc
Q psy6273          51 HKRKMH   56 (82)
Q Consensus        51 h~~~~~   56 (82)
                      |+.+|.
T Consensus       375 Hqlthq  380 (500)
T KOG3993|consen  375 HQLTHQ  380 (500)
T ss_pred             hHHhhh
Confidence            988776

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.21  E-value=1.5e-06  Score=30.95  Aligned_cols=24  Identities=25%  Similarity=0.531  Sum_probs=17.6

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      ||.|..|++.|.+...|..|++ .|
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~-~h   24 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKR-SH   24 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHC-TT
T ss_pred             CCCCCccCCccCChhHHHHHhH-Hh
Confidence            5677777777777777777775 44

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=98.06  E-value=3.3e-06  Score=28.95  Aligned_cols=20  Identities=20%  Similarity=0.614  Sum_probs=9.7

Q ss_pred             ccCcCCccccCHHHHHhHHH
Q psy6273           5 KCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         5 ~c~~c~~~~~~~~~l~~h~~   24 (82)
                      .|+.|+..|.+...|..|+.
T Consensus         2 ~C~~C~~~~~~~~~l~~H~~   21 (24)
T PF13894_consen    2 QCPICGKSFRSKSELRQHMR   21 (24)
T ss_dssp             E-SSTS-EESSHHHHHHHHH
T ss_pred             CCcCCCCcCCcHHHHHHHHH
Confidence            45555555555555555544

...

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=98.02  E-value=1.8e-06  Score=30.75  Aligned_cols=25  Identities=44%  Similarity=0.757  Sum_probs=19.5

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ++.|..|+..|.....|..|++.|.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~h~   25 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRSHC   25 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCTTT
T ss_pred             CCCCCccCCccCChhHHHHHhHHhc
Confidence            4678888888888888888887664

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=97.93  E-value=1.5e-05  Score=27.21  Aligned_cols=24  Identities=42%  Similarity=0.762  Sum_probs=19.6

Q ss_pred             cccccchhhhcCcHHHHHHHHHhc
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      |.|+.|+..|.....|..|+..++
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHHS
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhhC
Confidence            579999999999999999998763

...

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.89  E-value=1.9e-05  Score=32.16  Aligned_cols=32  Identities=16%  Similarity=0.291  Sum_probs=23.1

Q ss_pred             CCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        27 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ...+.|..|+.|+..+....+|.+|+...++.
T Consensus        19 ~~S~~PatCP~C~a~~~~srnLrRHle~~H~~   50 (54)
T PF09237_consen   19 SQSEQPATCPICGAVIRQSRNLRRHLEIRHFK   50 (54)
T ss_dssp             CTTS--EE-TTT--EESSHHHHHHHHHHHTTT
T ss_pred             hccCCCCCCCcchhhccchhhHHHHHHHHhcc
Confidence            44577889999999999999999999888776

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PRK04860 hypothetical protein; Provisional

Probab=97.89  E-value=1.1e-05  Score=40.63  Aligned_cols=40  Identities=23%  Similarity=0.628  Sum_probs=33.7

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQG   77 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~   77 (82)
                      +|.|. |+.   ....+..|.+++.++  ++|.|..|+..|.....
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~ri~~g~--~~YrC~~C~~~l~~~~~  158 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNRVVRGE--AVYRCRRCGETLVFKGE  158 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHHHhcCC--ccEECCCCCceeEEecc
Confidence            58897 876   667889999999999  99999999998875543

>smart00355 ZnF_C2H2 zinc finger

Probab=97.69  E-value=5.4e-05  Score=26.11  Aligned_cols=20  Identities=30%  Similarity=0.677  Sum_probs=9.6

Q ss_pred             ccCcCCccccCHHHHHhHHH
Q psy6273           5 KCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         5 ~c~~c~~~~~~~~~l~~h~~   24 (82)
                      .|..|++.|.....|..|+.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~   21 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMR   21 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHH
Confidence            34445555555544444443

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.59  E-value=7.2e-05  Score=30.49  Aligned_cols=30  Identities=17%  Similarity=0.338  Sum_probs=20.2

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      +.|-.|++|+..+....+|.+|+. ...+.+
T Consensus        22 ~~PatCP~C~a~~~~srnLrRHle-~~H~~k   51 (54)
T PF09237_consen   22 EQPATCPICGAVIRQSRNLRRHLE-IRHFKK   51 (54)
T ss_dssp             S--EE-TTT--EESSHHHHHHHHH-HHTTTS
T ss_pred             CCCCCCCcchhhccchhhHHHHHH-HHhccc
Confidence            357789999999999999999997 444443

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>smart00355 ZnF_C2H2 zinc finger

Probab=97.57  E-value=0.00012  Score=25.16  Aligned_cols=24  Identities=38%  Similarity=0.725  Sum_probs=21.1

Q ss_pred             cccccchhhhcCcHHHHHHHHHhc
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      +.|..|++.|.....|..|++.|.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHHhc
Confidence            468999999999999999998654

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=97.39  E-value=7.2e-05  Score=26.58  Aligned_cols=20  Identities=35%  Similarity=0.692  Sum_probs=14.4

Q ss_pred             eecCcccccccCcccccccC
Q psy6273          63 FSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        63 ~~C~~C~~~f~~~~~l~~H~   82 (82)
                      |.|..|++.|.....+..|+
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~   21 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHM   21 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCT
T ss_pred             CCcccCCCCcCCHHHHHHHH
Confidence            56777777777777777664

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.39  E-value=6.6e-05  Score=26.06  Aligned_cols=19  Identities=21%  Similarity=0.632  Sum_probs=10.2

Q ss_pred             ccCcCCccccCHHHHHhHH
Q psy6273           5 KCHACDVETKTRQALDNHI   23 (82)
Q Consensus         5 ~c~~c~~~~~~~~~l~~h~   23 (82)
                      .|..|+..|.+...+..|.
T Consensus         2 ~C~~C~~~f~s~~~~~~H~   20 (25)
T PF12874_consen    2 YCDICNKSFSSENSLRQHL   20 (25)
T ss_dssp             EETTTTEEESSHHHHHHHH
T ss_pred             CCCCCCCCcCCHHHHHHHH
Confidence            4555555555555555554

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=97.39  E-value=0.00011  Score=25.44  Aligned_cols=23  Identities=39%  Similarity=0.723  Sum_probs=20.3

Q ss_pred             cccccchhhhcCcHHHHHHHHHh
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~   55 (82)
                      |.|..|+..|.+...+..|++.+
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCCCcCCHHHHHHHHCcC
Confidence            56999999999999999998764

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=97.25  E-value=0.00024  Score=24.38  Aligned_cols=20  Identities=25%  Similarity=0.527  Sum_probs=8.5

Q ss_pred             ccccchhhhcCcHHHHHHHHH
Q psy6273          34 ACDQCVSYFKTNSALLQHKRK   54 (82)
Q Consensus        34 ~c~~c~~~~~~~~~l~~h~~~   54 (82)
                      .|+.|+.... ...|..|++.
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~~   21 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLKR   21 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHHH
T ss_pred             CCCCCCCcCC-HHHHHHHHHh
Confidence            3444544444 4445555444

>PRK04860 hypothetical protein; Provisional

Probab=97.22  E-value=0.00018  Score=36.41  Aligned_cols=38  Identities=18%  Similarity=0.498  Sum_probs=31.3

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCc
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTN   45 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~   45 (82)
                      +|.|. |+.   ....+.+|.+ ++.++++|.|..|+..+...
T Consensus       119 ~Y~C~-C~~---~~~~~rrH~r-i~~g~~~YrC~~C~~~l~~~  156 (160)
T PRK04860        119 PYRCK-CQE---HQLTVRRHNR-VVRGEAVYRCRRCGETLVFK  156 (160)
T ss_pred             EEEcC-CCC---eeCHHHHHHH-HhcCCccEECCCCCceeEEe
Confidence            57897 887   5566789998 99999999999999877544

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=96.43  E-value=0.0028  Score=22.11  Aligned_cols=18  Identities=28%  Similarity=0.584  Sum_probs=7.7

Q ss_pred             ccccchhhhcCcHHHHHHH
Q psy6273          34 ACDQCVSYFKTNSALLQHK   52 (82)
Q Consensus        34 ~c~~c~~~~~~~~~l~~h~   52 (82)
                      +|+.|++.| ..+.|..|+
T Consensus         4 ~C~~CgR~F-~~~~l~~H~   21 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHE   21 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHH
Confidence            344444444 333444443

>KOG2893|consensus

Probab=96.25  E-value=0.0022  Score=34.54  Aligned_cols=30  Identities=30%  Similarity=0.765  Sum_probs=15.1

Q ss_pred             cccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          35 CDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        35 c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      |..|++.|.....|.+|++    .  +.|+|-.|-+
T Consensus        13 cwycnrefddekiliqhqk----a--khfkchichk   42 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQK----A--KHFKCHICHK   42 (341)
T ss_pred             eeecccccchhhhhhhhhh----h--ccceeeeehh
Confidence            4455555555555555443    1  3455555544

>smart00451 ZnF_U1 U1-like zinc finger

Probab=96.03  E-value=0.0071  Score=22.46  Aligned_cols=22  Identities=18%  Similarity=0.581  Sum_probs=14.7

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      +|.|..|+..|.+...+..|+.
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~   24 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLK   24 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHC
Confidence            4667777777776666666654

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=95.83  E-value=0.0015  Score=36.55  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=17.2

Q ss_pred             CCCcccCcCCccccCHHHHHhHHH
Q psy6273           1 MTRYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      +|||.|++|++.+.....|+-|+.
T Consensus       396 ~KPYrCevC~KRYKNlNGLKYHr~  419 (423)
T COG5189         396 DKPYRCEVCDKRYKNLNGLKYHRK  419 (423)
T ss_pred             CCceeccccchhhccCccceeccc
Confidence            367777777777777777776653

>KOG1146|consensus

Probab=95.83  E-value=0.0093  Score=39.06  Aligned_cols=53  Identities=28%  Similarity=0.464  Sum_probs=43.1

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCC------------------------CCCccccccchhhhcCcHHHHHHHHH
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHT------------------------ETKSFACDQCVSYFKTNSALLQHKRK   54 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~------------------------~~~~~~c~~c~~~~~~~~~l~~h~~~   54 (82)
                      |-+.|+.|+..|.....|..|++..|.                        +.+++.|..|...+..+.+|..|+..
T Consensus       464 kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~LsihlqS  540 (1406)
T KOG1146|consen  464 KTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHLQS  540 (1406)
T ss_pred             ccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHHHH
Confidence            457899999999999999999983232                        23578899999999999999888764

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=95.83  E-value=0.01  Score=22.68  Aligned_cols=34  Identities=29%  Similarity=0.710  Sum_probs=20.1

Q ss_pred             cccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccccccc
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFR   73 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~   73 (82)
                      ..|+.|...|.....-     ...+.  ....|+.|+..|.
T Consensus         3 i~CP~C~~~f~v~~~~-----l~~~~--~~vrC~~C~~~f~   36 (37)
T PF13719_consen    3 ITCPNCQTRFRVPDDK-----LPAGG--RKVRCPKCGHVFR   36 (37)
T ss_pred             EECCCCCceEEcCHHH-----cccCC--cEEECCCCCcEee
Confidence            3577777777666541     22233  5677777776664

>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]

Probab=95.40  E-value=0.015  Score=24.58  Aligned_cols=32  Identities=28%  Similarity=0.550  Sum_probs=20.7

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      .|.|++|++.....-.     +-..-.  .+|.|+.||.
T Consensus        27 ~F~CPnCGe~~I~Rc~-----~CRk~g--~~Y~Cp~CGF   58 (61)
T COG2888          27 KFPCPNCGEVEIYRCA-----KCRKLG--NPYRCPKCGF   58 (61)
T ss_pred             EeeCCCCCceeeehhh-----hHHHcC--CceECCCcCc
Confidence            4889999965444332     222223  6899999985

>KOG2186|consensus

Probab=95.14  E-value=0.015  Score=31.68  Aligned_cols=47  Identities=19%  Similarity=0.518  Sum_probs=28.0

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKR   53 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~   53 (82)
                      -|.|..||....- ..+.+|+. .-++ .-|+|.+|++.|.. ..+..|..
T Consensus         3 ~FtCnvCgEsvKK-p~vekH~s-rCrn-~~fSCIDC~k~F~~-~sYknH~k   49 (276)
T KOG2186|consen    3 FFTCNVCGESVKK-PQVEKHMS-RCRN-AYFSCIDCGKTFER-VSYKNHTK   49 (276)
T ss_pred             EEehhhhhhhccc-cchHHHHH-hccC-CeeEEeeccccccc-chhhhhhh
Confidence            3567777766553 33566764 4343 45777778777776 33445543

>PF13717 zinc_ribbon_4: zinc-ribbon domain

Probab=95.07  E-value=0.023  Score=21.56  Aligned_cols=33  Identities=21%  Similarity=0.599  Sum_probs=17.5

Q ss_pred             cccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccc
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF   72 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f   72 (82)
                      ..|+.|...|.-.+..     .-...  ....|+.|+..|
T Consensus         3 i~Cp~C~~~y~i~d~~-----ip~~g--~~v~C~~C~~~f   35 (36)
T PF13717_consen    3 ITCPNCQAKYEIDDEK-----IPPKG--RKVRCSKCGHVF   35 (36)
T ss_pred             EECCCCCCEEeCCHHH-----CCCCC--cEEECCCCCCEe
Confidence            3566666666555542     11222  456677676655

>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain

Probab=95.06  E-value=0.023  Score=21.62  Aligned_cols=33  Identities=21%  Similarity=0.563  Sum_probs=15.7

Q ss_pred             cccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccc
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF   72 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f   72 (82)
                      ..|+.|+..|......     .....  ....|+.|+..|
T Consensus         3 ~~CP~C~~~~~v~~~~-----~~~~~--~~v~C~~C~~~~   35 (38)
T TIGR02098         3 IQCPNCKTSFRVVDSQ-----LGANG--GKVRCGKCGHVW   35 (38)
T ss_pred             EECCCCCCEEEeCHHH-----cCCCC--CEEECCCCCCEE
Confidence            3566666555544432     11111  245666666554

This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=94.94  E-value=0.037  Score=25.30  Aligned_cols=21  Identities=29%  Similarity=0.806  Sum_probs=10.0

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      +.|..|++.|.+...|..|+.
T Consensus        51 ~~C~~C~~~f~s~~~l~~Hm~   71 (100)
T PF12756_consen   51 FRCPYCNKTFRSREALQEHMR   71 (100)
T ss_dssp             EEBSSSS-EESSHHHHHHHHH
T ss_pred             CCCCccCCCCcCHHHHHHHHc
Confidence            445555555555555555544

>KOG1146|consensus

Probab=94.83  E-value=0.004  Score=40.61  Aligned_cols=57  Identities=25%  Similarity=0.419  Sum_probs=45.0

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCC-----------------------CCeeecCcccccccCcccccccC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEF-----------------------VNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~-----------------------~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .+...+.+.|+.|+-.+.....|..||+..+.+.                       .++|.|..|..++....+|.+|+
T Consensus       459 L~S~~kt~~cpkc~~~yk~a~~L~vhmRskhp~~~~~~c~~gq~~~~~arg~~~~~~~~p~~C~~C~~stttng~Lsihl  538 (1406)
T KOG1146|consen  459 LHSFFKTLKCPKCNWHYKLAQTLGVHMRSKHPESQSAYCKAGQNHPRLARGEVYRCPGKPYPCRACNYSTTTNGNLSIHL  538 (1406)
T ss_pred             eecccccccCCccchhhhhHHHhhhcccccccccchhHhHhccccccccccccccCCCCcccceeeeeeeecchHHHHHH
Confidence            4445578999999999999999999998822110                       26899999999999988887774

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=94.76  E-value=0.018  Score=27.47  Aligned_cols=15  Identities=33%  Similarity=0.886  Sum_probs=9.4

Q ss_pred             CeeecCcccccccCc
Q psy6273          61 NLFSCPLCGEVFRSH   75 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~   75 (82)
                      .|..|+.||..|.-.
T Consensus        25 ~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   25 DPIVCPKCGTEFPPE   39 (108)
T ss_pred             CCccCCCCCCccCcc
Confidence            566777777666543

The function of members of this family is unknown.

>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center

Probab=94.69  E-value=0.012  Score=21.84  Aligned_cols=8  Identities=50%  Similarity=1.634  Sum_probs=4.4

Q ss_pred             eeecCccc
Q psy6273          62 LFSCPLCG   69 (82)
Q Consensus        62 ~~~C~~C~   69 (82)
                      ++.|+.||
T Consensus        17 ~~~CP~Cg   24 (33)
T cd00350          17 PWVCPVCG   24 (33)
T ss_pred             CCcCcCCC
Confidence            55555554

The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>COG1592 Rubrerythrin [Energy production and conversion]

Probab=94.62  E-value=0.016  Score=29.66  Aligned_cols=23  Identities=30%  Similarity=0.749  Sum_probs=18.5

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCG   69 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~   69 (82)
                      -|.|++||..             +.|+  .|..||.||
T Consensus       134 ~~vC~vCGy~-------------~~ge--~P~~CPiCg  156 (166)
T COG1592         134 VWVCPVCGYT-------------HEGE--APEVCPICG  156 (166)
T ss_pred             EEEcCCCCCc-------------ccCC--CCCcCCCCC
Confidence            5999999875             3445  899999998

>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.57  E-value=0.0067  Score=37.36  Aligned_cols=57  Identities=21%  Similarity=0.368  Sum_probs=39.8

Q ss_pred             ccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273           5 KCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus         5 ~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      .|..||-+|+....|---+.++...+-+ .|+.|.+.+.++.+-    ++|.    .|..|+.||=
T Consensus       125 ~CT~CGPRfTIi~alPYDR~nTsM~~F~-lC~~C~~EY~dP~nR----RfHA----Qp~aCp~CGP  181 (750)
T COG0068         125 NCTNCGPRFTIIEALPYDRENTSMADFP-LCPFCDKEYKDPLNR----RFHA----QPIACPKCGP  181 (750)
T ss_pred             ccCCCCcceeeeccCCCCcccCccccCc-CCHHHHHHhcCcccc----cccc----ccccCcccCC
Confidence            3899999999877765443323333333 689999988887763    4555    5889999984

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=94.41  E-value=0.0042  Score=33.00  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=16.1

Q ss_pred             CCCcccCcCCccccCHHHHHhH
Q psy6273           1 MTRYKCHACDVETKTRQALDNH   22 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h   22 (82)
                      +|...|++|++.|.++......
T Consensus         3 ~k~~~CPvC~~~F~~~~vrs~~   24 (214)
T PF09986_consen    3 DKKITCPVCGKEFKTKKVRSGK   24 (214)
T ss_pred             CCceECCCCCCeeeeeEEEcCC
Confidence            4677899999999887544433

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=94.33  E-value=0.0053  Score=34.95  Aligned_cols=62  Identities=23%  Similarity=0.363  Sum_probs=42.9

Q ss_pred             CcccCcCCccccCHHHHHhHHHh-hCCCC--Cccccc--cchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273           3 RYKCHACDVETKTRQALDNHILC-VHTET--KSFACD--QCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~--~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      ++.|..|...+.....+..|... .|.++  .++.|+  .|++.|.....+..|...+.+.  .++.+.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  355 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHTSI--SPAKEK  355 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCcccccCC--Cccccc
Confidence            45667777777777777777652 46667  777777  6777777777777777777766  555543

>KOG4173|consensus

Probab=94.29  E-value=0.012  Score=31.07  Aligned_cols=72  Identities=22%  Similarity=0.471  Sum_probs=45.1

Q ss_pred             cccCc--CCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhc----------CCCCCeeec--Cccc
Q psy6273           4 YKCHA--CDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH----------DEFVNLFSC--PLCG   69 (82)
Q Consensus         4 ~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~----------~~~~~~~~C--~~C~   69 (82)
                      +.|++  |-+.+.....+..|.. +..+   -.|..|.+.|.+..-|..|+.-.+          |.  .-|.|  ..|+
T Consensus        80 ~~cqvagc~~~~d~lD~~E~hY~-~~h~---~sCs~C~r~~Pt~hLLd~HI~E~HDs~Fqa~veRG~--dMy~ClvEgCt  153 (253)
T KOG4173|consen   80 FACQVAGCCQVFDALDDYEHHYH-TLHG---NSCSFCKRAFPTGHLLDAHILEWHDSLFQALVERGQ--DMYQCLVEGCT  153 (253)
T ss_pred             ccccccchHHHHhhhhhHHHhhh-hccc---chhHHHHHhCCchhhhhHHHHHHHHHHHHHHHHcCc--cHHHHHHHhhh
Confidence            44555  5667777777777765 4333   368888888887777766654322          22  45777  3487


Q ss_pred             ccccCccccccc
Q psy6273          70 EVFRSHQGYKIH   81 (82)
Q Consensus        70 ~~f~~~~~l~~H   81 (82)
                      ..|.....-+.|
T Consensus       154 ~KFkT~r~RkdH  165 (253)
T KOG4173|consen  154 EKFKTSRDRKDH  165 (253)
T ss_pred             hhhhhhhhhhhH
Confidence            777766554444

>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]

Probab=94.22  E-value=0.027  Score=23.49  Aligned_cols=22  Identities=18%  Similarity=0.446  Sum_probs=16.2

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      -+.|+-|+..|.....+.+|..
T Consensus        17 ~lrCPRC~~~FR~~K~Y~RHVN   38 (65)
T COG4049          17 FLRCPRCGMVFRRRKDYIRHVN   38 (65)
T ss_pred             eeeCCchhHHHHHhHHHHHHhh
Confidence            3567778888877777777765

>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase

Probab=94.05  E-value=0.022  Score=21.37  Aligned_cols=9  Identities=44%  Similarity=1.243  Sum_probs=5.0

Q ss_pred             CeeecCccc
Q psy6273          61 NLFSCPLCG   69 (82)
Q Consensus        61 ~~~~C~~C~   69 (82)
                      .|..|+.||
T Consensus        17 ~p~~CP~Cg   25 (34)
T cd00729          17 APEKCPICG   25 (34)
T ss_pred             CCCcCcCCC
Confidence            345666665

In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=93.27  E-value=0.11  Score=26.51  Aligned_cols=34  Identities=32%  Similarity=0.648  Sum_probs=24.1

Q ss_pred             CCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccc
Q psy6273          28 TETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF   72 (82)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f   72 (82)
                      ....-|.|+.|+..|....++.           .-|.|+.||...
T Consensus       105 ~~~~~Y~Cp~c~~r~tf~eA~~-----------~~F~Cp~Cg~~L  138 (158)
T TIGR00373       105 TNNMFFICPNMCVRFTFNEAME-----------LNFTCPRCGAML  138 (158)
T ss_pred             cCCCeEECCCCCcEeeHHHHHH-----------cCCcCCCCCCEe
Confidence            3456788988887776666653           358999998653

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>KOG2186|consensus

Probab=92.94  E-value=0.061  Score=29.42  Aligned_cols=44  Identities=32%  Similarity=0.696  Sum_probs=32.5

Q ss_pred             cccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      |.|..|+....-+ .+.+|+....+.   .|.|-.|+..|.. .+.+.|
T Consensus         4 FtCnvCgEsvKKp-~vekH~srCrn~---~fSCIDC~k~F~~-~sYknH   47 (276)
T KOG2186|consen    4 FTCNVCGESVKKP-QVEKHMSRCRNA---YFSCIDCGKTFER-VSYKNH   47 (276)
T ss_pred             Eehhhhhhhcccc-chHHHHHhccCC---eeEEeeccccccc-chhhhh
Confidence            6889999876554 456788777764   7999999999987 344444

>KOG2482|consensus

Probab=92.84  E-value=0.17  Score=29.06  Aligned_cols=80  Identities=21%  Similarity=0.493  Sum_probs=53.8

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCC----------------------------------------------------
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTET----------------------------------------------------   30 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~----------------------------------------------------   30 (82)
                      .+.|-.|.+.|..+..|..||+......                                                    
T Consensus       195 r~~CLyCekifrdkntLkeHMrkK~HrrinPknreYDkfyiINY~ev~ks~t~~~~e~dret~~d~~E~D~~wsDw~ed~  274 (423)
T KOG2482|consen  195 RLRCLYCEKIFRDKNTLKEHMRKKRHRRINPKNREYDKFYIINYLEVGKSWTIVHSEDDRETNEDINETDDTWSDWNEDD  274 (423)
T ss_pred             hheeeeeccccCCcHHHHHHHHhccCcccCCCccccceEEEEeHhhcCCccchhhhhhhhhhhccccccccchhhhhcCC
Confidence            3578889999999999999987411100                                                    


Q ss_pred             -C--ccccccchhhhcCcHHHHHHHHHhcC--------C-C----------------CCeeecCcccccccCcccccccC
Q psy6273          31 -K--SFACDQCVSYFKTNSALLQHKRKMHD--------E-F----------------VNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        31 -~--~~~c~~c~~~~~~~~~l~~h~~~~~~--------~-~----------------~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                       .  ...|-.|.........|..||..-+.        + +                ...-.|..|.-.|.....|..||
T Consensus       275 a~a~~v~CLfC~~~~en~~~l~eHmk~vHe~Dl~Ki~sd~~Ln~YqrvrviNyiRkq~~~~~c~~cd~~F~~e~~l~~hm  354 (423)
T KOG2482|consen  275 AEALSVVCLFCTNFYENPVFLFEHMKIVHEFDLLKIQSDYSLNFYQRVRVINYIRKQKKKSRCAECDLSFWKEPGLLIHM  354 (423)
T ss_pred             CCccceEEEeeccchhhHHHHHHHHHHHHHhhHHhhccccccchhhhhhHHHHHHHHhhccccccccccccCcchhhhhc
Confidence             0  13677787777777888888864321        0 0                02245667778888888887775

>PF08790 zf-LYAR: LYAR-type C2HC zinc finger ; InterPro: IPR014898 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=92.76  E-value=0.06  Score=19.32  Aligned_cols=11  Identities=45%  Similarity=0.939  Sum_probs=7.8

Q ss_pred             eecCccccccc
Q psy6273          63 FSCPLCGEVFR   73 (82)
Q Consensus        63 ~~C~~C~~~f~   73 (82)
                      |.|..|++.|.
T Consensus         1 ~sCiDC~~~F~   11 (28)
T PF08790_consen    1 FSCIDCSKDFD   11 (28)
T ss_dssp             EEETTTTEEEE
T ss_pred             CeeecCCCCcC
Confidence            46777877774

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This C2HC zinc finger domain is found in LYAR proteins such as Q08288 from SWISSPROT, which are involved in cell growth regulation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1WJV_A.

>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional

Probab=92.68  E-value=0.097  Score=22.18  Aligned_cols=33  Identities=24%  Similarity=0.602  Sum_probs=20.1

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      ..|.|+.|+......-.     +-....  .+|.|+.||.
T Consensus        24 ~~F~CPnCG~~~I~RC~-----~CRk~~--~~Y~CP~CGF   56 (59)
T PRK14890         24 VKFLCPNCGEVIIYRCE-----KCRKQS--NPYTCPKCGF   56 (59)
T ss_pred             CEeeCCCCCCeeEeech-----hHHhcC--CceECCCCCC
Confidence            35889999876333221     222223  6899999985

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=92.31  E-value=0.037  Score=22.07  Aligned_cols=9  Identities=44%  Similarity=1.110  Sum_probs=4.3

Q ss_pred             eeecCcccc
Q psy6273          62 LFSCPLCGE   70 (82)
Q Consensus        62 ~~~C~~C~~   70 (82)
                      ...|+.||.
T Consensus        21 ~~~Cp~CG~   29 (46)
T PRK00398         21 GVRCPYCGY   29 (46)
T ss_pred             ceECCCCCC
Confidence            345555543

>smart00531 TFIIE Transcription initiation factor IIE

Probab=92.30  E-value=0.48  Score=23.82  Aligned_cols=38  Identities=26%  Similarity=0.619  Sum_probs=24.5

Q ss_pred             CCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccc
Q psy6273          29 ETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF   72 (82)
Q Consensus        29 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f   72 (82)
                      ....|.|+.|+..|.....+.    ....+  ..|.|+.||...
T Consensus        96 ~~~~Y~Cp~C~~~y~~~ea~~----~~d~~--~~f~Cp~Cg~~l  133 (147)
T smart00531       96 NNAYYKCPNCQSKYTFLEANQ----LLDMD--GTFTCPRCGEEL  133 (147)
T ss_pred             CCcEEECcCCCCEeeHHHHHH----hcCCC--CcEECCCCCCEE
Confidence            455789999998876544332    11113  459999998754

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=92.27  E-value=0.15  Score=26.54  Aligned_cols=33  Identities=33%  Similarity=0.735  Sum_probs=20.9

Q ss_pred             CCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccc
Q psy6273          29 ETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF   72 (82)
Q Consensus        29 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f   72 (82)
                      ...-|.|+.|+..|....++.           .-|.|+.||...
T Consensus       114 ~~~~Y~Cp~C~~rytf~eA~~-----------~~F~Cp~Cg~~L  146 (178)
T PRK06266        114 NNMFFFCPNCHIRFTFDEAME-----------YGFRCPQCGEML  146 (178)
T ss_pred             CCCEEECCCCCcEEeHHHHhh-----------cCCcCCCCCCCC
Confidence            345677888877665555442           358888887543

>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300

Probab=91.77  E-value=0.11  Score=25.50  Aligned_cols=12  Identities=33%  Similarity=0.490  Sum_probs=6.4

Q ss_pred             CeeecCcccccc
Q psy6273          61 NLFSCPLCGEVF   72 (82)
Q Consensus        61 ~~~~C~~C~~~f   72 (82)
                      .|..|+.||..|
T Consensus        25 ~p~vcP~cg~~~   36 (129)
T TIGR02300        25 RPAVSPYTGEQF   36 (129)
T ss_pred             CCccCCCcCCcc
Confidence            455555555544

Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.

>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species

Probab=91.42  E-value=0.12  Score=17.88  Aligned_cols=10  Identities=50%  Similarity=1.105  Sum_probs=6.7

Q ss_pred             CeeecCcccc
Q psy6273          61 NLFSCPLCGE   70 (82)
Q Consensus        61 ~~~~C~~C~~   70 (82)
                      .+|.|+.||+
T Consensus        15 v~f~CPnCG~   24 (24)
T PF07754_consen   15 VPFPCPNCGF   24 (24)
T ss_pred             ceEeCCCCCC
Confidence            4677777763

It is likely to bind zinc via its four well-conserved cysteine residues.

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=91.26  E-value=0.071  Score=30.47  Aligned_cols=51  Identities=35%  Similarity=0.658  Sum_probs=42.3

Q ss_pred             ccccccchhhhcCcHHHHHHHH--HhcCCCCCeeecC--cccccccCcccccccC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKR--KMHDEFVNLFSCP--LCGEVFRSHQGYKIHH   82 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~--~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~   82 (82)
                      .+.|..|...|.....+..|.+  .|.++..+|+.|+  .|++.|.....+..|.
T Consensus       289 ~~~~~~~~~~~s~~~~l~~~~~~~~h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  343 (467)
T COG5048         289 PIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHI  343 (467)
T ss_pred             CCCCccccCCccccccccccccccccccccCCceeeeccCCCccccccccccCCc
Confidence            5788889999999999999999  6776522599999  7999999998887763

>PHA00626 hypothetical protein

Probab=91.11  E-value=0.12  Score=21.63  Aligned_cols=15  Identities=20%  Similarity=0.350  Sum_probs=11.1

Q ss_pred             CeeecCcccccccCc
Q psy6273          61 NLFSCPLCGEVFRSH   75 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~   75 (82)
                      ..|.|+.||..|+..
T Consensus        22 nrYkCkdCGY~ft~~   36 (59)
T PHA00626         22 DDYVCCDCGYNDSKD   36 (59)
T ss_pred             cceEcCCCCCeechh
Confidence            568888888777654

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=90.82  E-value=0.25  Score=26.56  Aligned_cols=26  Identities=23%  Similarity=0.528  Sum_probs=20.2

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHT   28 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~   28 (82)
                      .|.|..|++.|.-...+..|+...|.
T Consensus        77 K~~C~lc~KlFkg~eFV~KHI~nKH~  102 (214)
T PF04959_consen   77 KWRCPLCGKLFKGPEFVRKHIFNKHP  102 (214)
T ss_dssp             EEEE-SSS-EESSHHHHHHHHHHH-H
T ss_pred             EECCCCCCcccCChHHHHHHHhhcCH
Confidence            47899999999999999999986554

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>smart00659 RPOLCX RNA polymerase subunit CX

Probab=90.72  E-value=0.19  Score=19.99  Aligned_cols=10  Identities=30%  Similarity=0.903  Sum_probs=5.5

Q ss_pred             CeeecCcccc
Q psy6273          61 NLFSCPLCGE   70 (82)
Q Consensus        61 ~~~~C~~C~~   70 (82)
                      .+..|+.||.
T Consensus        18 ~~irC~~CG~   27 (44)
T smart00659       18 DVVRCRECGY   27 (44)
T ss_pred             CceECCCCCc
Confidence            3556666653

present in RNA polymerase I, II and III

>KOG2893|consensus

Probab=90.45  E-value=0.068  Score=29.10  Aligned_cols=32  Identities=28%  Similarity=0.581  Sum_probs=26.2

Q ss_pred             cCcCCccccCHHHHHhHHHhhCCCCCccccccchhhh
Q psy6273           6 CHACDVETKTRQALDNHILCVHTETKSFACDQCVSYF   42 (82)
Q Consensus         6 c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~   42 (82)
                      |=.|++.|..+..|.+|++.     +.|.|-+|.+..
T Consensus        13 cwycnrefddekiliqhqka-----khfkchichkkl   44 (341)
T KOG2893|consen   13 CWYCNREFDDEKILIQHQKA-----KHFKCHICHKKL   44 (341)
T ss_pred             eeecccccchhhhhhhhhhh-----ccceeeeehhhh
Confidence            67799999999999999883     348899998643

>PF13451 zf-trcl: Probable zinc-binding domain

Probab=90.37  E-value=0.28  Score=20.05  Aligned_cols=13  Identities=23%  Similarity=0.595  Sum_probs=7.2

Q ss_pred             CCcccCcCCcccc
Q psy6273           2 TRYKCHACDVETK   14 (82)
Q Consensus         2 k~~~c~~c~~~~~   14 (82)
                      +.+.|..||..|.
T Consensus         3 k~l~C~dCg~~Fv   15 (49)
T PF13451_consen    3 KTLTCKDCGAEFV   15 (49)
T ss_pred             eeEEcccCCCeEE
Confidence            4555666665544

>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A

Probab=90.04  E-value=0.099  Score=21.83  Aligned_cols=41  Identities=20%  Similarity=0.444  Sum_probs=22.9

Q ss_pred             Ccccccc--chhhhcCcHHHHHHHHHhcCCCCCeeecCc----ccccccC
Q psy6273          31 KSFACDQ--CVSYFKTNSALLQHKRKMHDEFVNLFSCPL----CGEVFRS   74 (82)
Q Consensus        31 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~----C~~~f~~   74 (82)
                      .+..|+.  |... .....|..|....-..  ++..|+.    |+..+..
T Consensus         8 ~~v~C~~~cc~~~-i~r~~l~~H~~~~C~~--~~v~C~~~~~GC~~~~~~   54 (60)
T PF02176_consen    8 RPVPCPNGCCNEM-IPRKELDDHLENECPK--RPVPCPYSPYGCKERVPR   54 (60)
T ss_dssp             SEEE-TT--S-BE-EECCCHHHHHHTTSTT--SEEE-SS----S--EEEH
T ss_pred             CEeeCCCCCcccc-eeHHHHHHHHHccCCC--CcEECCCCCCCCCCccch
Confidence            3456766  4333 3355678888866666  7888888    7766543

>PRK00464 nrdR transcriptional regulator NrdR; Validated

Probab=89.72  E-value=0.035  Score=28.14  Aligned_cols=13  Identities=31%  Similarity=0.439  Sum_probs=7.0

Q ss_pred             cccccchhhhcCc
Q psy6273          33 FACDQCVSYFKTN   45 (82)
Q Consensus        33 ~~c~~c~~~~~~~   45 (82)
                      ++|+.|+..|...
T Consensus        29 ~~c~~c~~~f~~~   41 (154)
T PRK00464         29 RECLACGKRFTTF   41 (154)
T ss_pred             eeccccCCcceEe
Confidence            4555666555443

>KOG2482|consensus

Probab=88.97  E-value=0.57  Score=27.07  Aligned_cols=66  Identities=24%  Similarity=0.350  Sum_probs=40.7

Q ss_pred             HHHHhHHHhhCCCCCccccccchhhhcCc-HHHHHHHHHhcC----CC----------------CCeeecCcccccccCc
Q psy6273          17 QALDNHILCVHTETKSFACDQCVSYFKTN-SALLQHKRKMHD----EF----------------VNLFSCPLCGEVFRSH   75 (82)
Q Consensus        17 ~~l~~h~~~~~~~~~~~~c~~c~~~~~~~-~~l~~h~~~~~~----~~----------------~~~~~C~~C~~~f~~~   75 (82)
                      ..|.++++-........+|-.|+..+... +.+..|+-.-++    ..                ...+.|-.|.+.|..+
T Consensus       129 eaLeqqQ~Eredt~fslqClFCn~e~lgnRs~~l~Hlf~~H~lniGlpDniVyvnelLehLkekL~r~~CLyCekifrdk  208 (423)
T KOG2482|consen  129 EALEQQQKEREDTIFSLQCLFCNNEGLGNRSEILEHLFHVHGLNIGLPDNIVYVNELLEHLKEKLERLRCLYCEKIFRDK  208 (423)
T ss_pred             HHHHHHHHHhcCCeeeeEEEEecchhcccHHHHHHHHHHHhhhccCCCcceeeHHHHHHHHHHHHhhheeeeeccccCCc
Confidence            44555554222223456788888766555 445556543221    10                1347899999999999


Q ss_pred             ccccccC
Q psy6273          76 QGYKIHH   82 (82)
Q Consensus        76 ~~l~~H~   82 (82)
                      ..|+.||
T Consensus       209 ntLkeHM  215 (423)
T KOG2482|consen  209 NTLKEHM  215 (423)
T ss_pred             HHHHHHH
Confidence            9998886

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=88.63  E-value=0.21  Score=17.52  Aligned_cols=11  Identities=45%  Similarity=0.939  Sum_probs=6.1

Q ss_pred             eecCccccccc
Q psy6273          63 FSCPLCGEVFR   73 (82)
Q Consensus        63 ~~C~~C~~~f~   73 (82)
                      -.|+.||..|.
T Consensus        15 ~~Cp~CG~~F~   25 (26)
T PF10571_consen   15 KFCPHCGYDFE   25 (26)
T ss_pred             CcCCCCCCCCc
Confidence            35566665553

Several members are annotated as putative helicases.

>KOG2593|consensus

Probab=87.52  E-value=1.2  Score=26.57  Aligned_cols=39  Identities=23%  Similarity=0.523  Sum_probs=26.1

Q ss_pred             CCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccccc
Q psy6273          28 TETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEV   71 (82)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~   71 (82)
                      .....|.|+.|.+.|.....++   -.-...  -.|.|..|+..
T Consensus       124 t~~~~Y~Cp~C~kkyt~Lea~~---L~~~~~--~~F~C~~C~ge  162 (436)
T KOG2593|consen  124 TNVAGYVCPNCQKKYTSLEALQ---LLDNET--GEFHCENCGGE  162 (436)
T ss_pred             cccccccCCccccchhhhHHHH---hhcccC--ceEEEecCCCc
Confidence            3456799999999887766653   222223  46999998743

>PRK09678 DNA-binding transcriptional regulator; Provisional

Probab=87.51  E-value=0.14  Score=22.70  Aligned_cols=15  Identities=20%  Similarity=0.545  Sum_probs=7.9

Q ss_pred             CeeecC--cccccccCc
Q psy6273          61 NLFSCP--LCGEVFRSH   75 (82)
Q Consensus        61 ~~~~C~--~C~~~f~~~   75 (82)
                      ..+.|.  +||..|...
T Consensus        26 ~Y~qC~N~eCg~tF~t~   42 (72)
T PRK09678         26 RYHQCQNVNCSATFITY   42 (72)
T ss_pred             eeeecCCCCCCCEEEEE
Confidence            455554  566555443

>TIGR00622 ssl1 transcription factor ssl1

Probab=87.19  E-value=0.72  Score=22.29  Aligned_cols=67  Identities=18%  Similarity=0.369  Sum_probs=38.9

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCC------CCCc-------cccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccc
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHT------ETKS-------FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCG   69 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~------~~~~-------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~   69 (82)
                      |..|+.|+-.......|.+..-  |.      .+.+       -.|..|...|........  ......  ..|.|+.|.
T Consensus        15 P~~CpiCgLtLVss~HLARSyH--HLfPl~~f~ev~~~~~~~~~~C~~C~~~f~~~~~~~~--~~~~~~--~~y~C~~C~   88 (112)
T TIGR00622        15 PVECPICGLTLILSTHLARSYH--HLFPLKAFQEIPLEEYNGSRFCFGCQGPFPKPPVSPF--DELKDS--HRYVCAVCK   88 (112)
T ss_pred             CCcCCcCCCEEeccchHHHhhh--ccCCCcccccccccccCCCCcccCcCCCCCCcccccc--cccccc--cceeCCCCC
Confidence            6778899988877777776532  21      0111       137777777765431110  001122  579999999


Q ss_pred             ccccCc
Q psy6273          70 EVFRSH   75 (82)
Q Consensus        70 ~~f~~~   75 (82)
                      ..|--.
T Consensus        89 ~~FC~d   94 (112)
T TIGR00622        89 NVFCVD   94 (112)
T ss_pred             Cccccc
Confidence            888644

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00834 CxxC_CXXC_SSSS Putative regulatory protein

Probab=86.94  E-value=0.34  Score=18.46  Aligned_cols=15  Identities=27%  Similarity=0.682  Sum_probs=11.0

Q ss_pred             CeeecCcccccccCc
Q psy6273          61 NLFSCPLCGEVFRSH   75 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~   75 (82)
                      -.|.|..||..|...
T Consensus         4 Y~y~C~~Cg~~fe~~   18 (41)
T smart00834        4 YEYRCEDCGHTFEVL   18 (41)
T ss_pred             EEEEcCCCCCEEEEE
Confidence            358899999877533

CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]

Probab=86.74  E-value=0.35  Score=22.21  Aligned_cols=33  Identities=18%  Similarity=0.438  Sum_probs=21.3

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQ   76 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~   76 (82)
                      .+.|+.|++....          ..+.  .-|.|..||..|+-.+
T Consensus        35 ~~~Cp~C~~~~Vk----------R~a~--GIW~C~kCg~~fAGga   67 (89)
T COG1997          35 KHVCPFCGRTTVK----------RIAT--GIWKCRKCGAKFAGGA   67 (89)
T ss_pred             CCcCCCCCCccee----------eecc--CeEEcCCCCCeecccc
Confidence            4788888865211          1122  5699999998886543

>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association

Probab=86.47  E-value=1.1  Score=18.44  Aligned_cols=11  Identities=45%  Similarity=1.265  Sum_probs=5.4

Q ss_pred             ecCcccccccC
Q psy6273          64 SCPLCGEVFRS   74 (82)
Q Consensus        64 ~C~~C~~~f~~   74 (82)
                      .|+.|++.|..
T Consensus        22 ~CPlC~r~l~~   32 (54)
T PF04423_consen   22 CCPLCGRPLDE   32 (54)
T ss_dssp             E-TTT--EE-H
T ss_pred             cCCCCCCCCCH
Confidence            88888887753

The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=86.42  E-value=0.39  Score=18.52  Aligned_cols=14  Identities=36%  Similarity=0.899  Sum_probs=11.6

Q ss_pred             eeecCcccccccCc
Q psy6273          62 LFSCPLCGEVFRSH   75 (82)
Q Consensus        62 ~~~C~~C~~~f~~~   75 (82)
                      ||.|..|+..|-..
T Consensus        12 ~f~C~~C~~~FC~~   25 (39)
T smart00154       12 GFKCRHCGNLFCGE   25 (39)
T ss_pred             CeECCccCCccccc
Confidence            89999999888654

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates

Probab=85.51  E-value=0.19  Score=18.58  Aligned_cols=7  Identities=57%  Similarity=1.673  Sum_probs=3.1

Q ss_pred             eecCccc
Q psy6273          63 FSCPLCG   69 (82)
Q Consensus        63 ~~C~~C~   69 (82)
                      ..|+.||
T Consensus        18 irC~~CG   24 (32)
T PF03604_consen   18 IRCPECG   24 (32)
T ss_dssp             SSBSSSS
T ss_pred             EECCcCC
Confidence            3444444

Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....

>KOG4173|consensus

Probab=85.44  E-value=0.27  Score=26.32  Aligned_cols=46  Identities=26%  Similarity=0.606  Sum_probs=32.7

Q ss_pred             cccccc--chhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          32 SFACDQ--CVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        32 ~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .+.|++  |...|...+.+..|-.+.++.     .|..|.+.|.+...|..|+
T Consensus        79 ~~~cqvagc~~~~d~lD~~E~hY~~~h~~-----sCs~C~r~~Pt~hLLd~HI  126 (253)
T KOG4173|consen   79 AFACQVAGCCQVFDALDDYEHHYHTLHGN-----SCSFCKRAFPTGHLLDAHI  126 (253)
T ss_pred             cccccccchHHHHhhhhhHHHhhhhcccc-----hhHHHHHhCCchhhhhHHH
Confidence            456755  556677667677766655555     7999999999887776664

>PF12013 DUF3505: Protein of unknown function (DUF3505); InterPro: IPR022698 This family of proteins is functionally uncharacterised

Probab=85.42  E-value=0.76  Score=21.79  Aligned_cols=26  Identities=23%  Similarity=0.547  Sum_probs=20.8

Q ss_pred             cccc----ccchhhhcCcHHHHHHHHHhcC
Q psy6273          32 SFAC----DQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        32 ~~~c----~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      .|.|    ..|++...+...+..|.+..+|
T Consensus        80 G~~C~~~~~~C~y~~~~~~~m~~H~~~~Hg  109 (109)
T PF12013_consen   80 GYRCQCDPPHCGYITRSKKTMRKHWRKEHG  109 (109)
T ss_pred             CeeeecCCCCCCcEeccHHHHHHHHHHhcC
Confidence            4788    8888888888888888887653

This protein is found in eukaryotes. Proteins in this family are typically between 247 to 1018 amino acids in length. This region contains two segments that are likely to be C2H2 zinc binding domains.

>PF04959 ARS2: Arsenite-resistance protein 2; InterPro: IPR007042 This entry represents Arsenite-resistance protein 2 (also known as Serrate RNA effector molecule homolog) which is thought to play a role in arsenite resistance [], although does not directly confer arsenite resistance but rather modulates arsenic sensitivity []

Probab=85.39  E-value=0.34  Score=26.06  Aligned_cols=29  Identities=24%  Similarity=0.429  Sum_probs=22.1

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +.-|.|..|++.|.....+..|+...+.+
T Consensus        75 ~~K~~C~lc~KlFkg~eFV~KHI~nKH~e  103 (214)
T PF04959_consen   75 EDKWRCPLCGKLFKGPEFVRKHIFNKHPE  103 (214)
T ss_dssp             SEEEEE-SSS-EESSHHHHHHHHHHH-HH
T ss_pred             CCEECCCCCCcccCChHHHHHHHhhcCHH
Confidence            44589999999999999999999876654

Arsenite is a carcinogenic compound which can act as a comutagen by inhibiting DNA repair. It is also involved in cell cycle progression at S phase. ; PDB: 3AX1_A.

>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria

Probab=85.20  E-value=0.46  Score=18.58  Aligned_cols=15  Identities=33%  Similarity=0.758  Sum_probs=11.0

Q ss_pred             eeecCcccccccCcc
Q psy6273          62 LFSCPLCGEVFRSHQ   76 (82)
Q Consensus        62 ~~~C~~C~~~f~~~~   76 (82)
                      .|.|..||..|....
T Consensus         5 ey~C~~Cg~~fe~~~   19 (42)
T PF09723_consen    5 EYRCEECGHEFEVLQ   19 (42)
T ss_pred             EEEeCCCCCEEEEEE
Confidence            588999998776443

The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.

>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.94  E-value=0.39  Score=18.84  Aligned_cols=15  Identities=33%  Similarity=0.720  Sum_probs=9.4

Q ss_pred             CeeecCcccccccCc
Q psy6273          61 NLFSCPLCGEVFRSH   75 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~   75 (82)
                      -|+.|..|+..|-..
T Consensus        12 ~~~~C~~C~~~FC~~   26 (43)
T PF01428_consen   12 LPFKCKHCGKSFCLK   26 (43)
T ss_dssp             SHEE-TTTS-EE-TT
T ss_pred             CCeECCCCCcccCcc
Confidence            489999999888643

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.

>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger

Probab=83.63  E-value=1.5  Score=15.28  Aligned_cols=18  Identities=22%  Similarity=0.654  Sum_probs=9.3

Q ss_pred             ccCcCCccccCHHHHHhHH
Q psy6273           5 KCHACDVETKTRQALDNHI   23 (82)
Q Consensus         5 ~c~~c~~~~~~~~~l~~h~   23 (82)
                      .|+.|++.+ ....+..|.
T Consensus         3 ~CPiC~~~v-~~~~in~HL   20 (26)
T smart00734        3 QCPVCFREV-PENLINSHL   20 (26)
T ss_pred             cCCCCcCcc-cHHHHHHHH
Confidence            466666665 334444443

Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.

>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]

Probab=83.28  E-value=0.43  Score=19.52  Aligned_cols=10  Identities=20%  Similarity=0.760  Sum_probs=5.7

Q ss_pred             cccccchhhh
Q psy6273          33 FACDQCVSYF   42 (82)
Q Consensus        33 ~~c~~c~~~~   42 (82)
                      |.|..|++.+
T Consensus         7 Y~C~~Cg~~~   16 (49)
T COG1996           7 YKCARCGREV   16 (49)
T ss_pred             EEhhhcCCee
Confidence            5555665555

>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF

Probab=82.12  E-value=0.19  Score=31.57  Aligned_cols=55  Identities=22%  Similarity=0.399  Sum_probs=34.4

Q ss_pred             cCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccc
Q psy6273           6 CHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCG   69 (82)
Q Consensus         6 c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~   69 (82)
                      |..||-.|.....|-.-..++-. ..--.|+.|.+.+.++.+-    ++|.    .+-.|+.||
T Consensus        93 Ct~CGPr~~i~~~lpydr~~t~m-~~f~~C~~C~~ey~~p~~r----r~h~----~~~~C~~Cg  147 (711)
T TIGR00143        93 CTHCGPRFTIIEALPYDRENTSM-ADFPLCPDCAKEYKDPLDR----RFHA----QPIACPRCG  147 (711)
T ss_pred             ccCCCCCeEEeecCCCCCCCcCC-CCCcCCHHHHHHhcCCccc----cCCC----CCccCCCCC
Confidence            88899888876654432211212 2223788898887776542    3444    578899998

A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.

>PF10013 DUF2256: Uncharacterized protein conserved in bacteria (DUF2256); InterPro: IPR017136 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=82.12  E-value=0.46  Score=18.72  Aligned_cols=14  Identities=36%  Similarity=0.906  Sum_probs=9.6

Q ss_pred             eecCcccccccCcc
Q psy6273          63 FSCPLCGEVFRSHQ   76 (82)
Q Consensus        63 ~~C~~C~~~f~~~~   76 (82)
                      =.|+.|++.|++.-
T Consensus         9 K~C~~C~rpf~WRK   22 (42)
T PF10013_consen    9 KICPVCGRPFTWRK   22 (42)
T ss_pred             CcCcccCCcchHHH
Confidence            36778888887653

>KOG2231|consensus

Probab=81.88  E-value=1.1  Score=28.24  Aligned_cols=21  Identities=38%  Similarity=0.662  Sum_probs=12.7

Q ss_pred             cCcCCccccCHHHHHhHHHhhC
Q psy6273           6 CHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         6 c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      |..| ..|.+...|..|+...|
T Consensus       118 ~~~c-~~~~s~~~Lk~H~~~~H  138 (669)
T KOG2231|consen  118 CLHC-TEFKSVENLKNHMRDQH  138 (669)
T ss_pred             Cccc-cchhHHHHHHHHHHHhh
Confidence            3444 44457788888875334

>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function

Probab=81.78  E-value=0.7  Score=23.23  Aligned_cols=19  Identities=21%  Similarity=0.899  Sum_probs=15.6

Q ss_pred             CeeecCcccccccCccccc
Q psy6273          61 NLFSCPLCGEVFRSHQGYK   79 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~~~l~   79 (82)
                      .-+.|+.||+.|+..+.+.
T Consensus       123 ~f~~C~~C~kiyW~GsH~~  141 (147)
T PF01927_consen  123 EFWRCPGCGKIYWEGSHWR  141 (147)
T ss_pred             eEEECCCCCCEecccccHH
Confidence            4689999999999876654

The proteins contain four conserved cysteines that may be involved in metal binding or disulphide bridges.

>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family

Probab=81.56  E-value=0.77  Score=18.59  Aligned_cols=14  Identities=29%  Similarity=0.797  Sum_probs=10.2

Q ss_pred             eeecCcccccccCc
Q psy6273          62 LFSCPLCGEVFRSH   75 (82)
Q Consensus        62 ~~~C~~C~~~f~~~   75 (82)
                      -|.|..||..|...
T Consensus         5 ey~C~~Cg~~fe~~   18 (52)
T TIGR02605         5 EYRCTACGHRFEVL   18 (52)
T ss_pred             EEEeCCCCCEeEEE
Confidence            47888888877543

This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.

>KOG3408|consensus

Probab=81.49  E-value=1.5  Score=21.55  Aligned_cols=27  Identities=30%  Similarity=0.559  Sum_probs=22.5

Q ss_pred             CCCCccccccchhhhcCcHHHHHHHHH
Q psy6273          28 TETKSFACDQCVSYFKTNSALLQHKRK   54 (82)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~~~   54 (82)
                      +|...|-|..|.+.|.+...|..|.++
T Consensus        53 PG~GqfyCi~CaRyFi~~~~l~~H~kt   79 (129)
T KOG3408|consen   53 PGGGQFYCIECARYFIDAKALKTHFKT   79 (129)
T ss_pred             CCCceeehhhhhhhhcchHHHHHHHhc
Confidence            345568899999999999999988765

>smart00614 ZnF_BED BED zinc finger

Probab=80.86  E-value=2.1  Score=17.25  Aligned_cols=8  Identities=50%  Similarity=0.576  Sum_probs=4.0

Q ss_pred             HHHHHHHH
Q psy6273          46 SALLQHKR   53 (82)
Q Consensus        46 ~~l~~h~~   53 (82)
                      ++|.+|+.
T Consensus        37 s~L~rHl~   44 (50)
T smart00614       37 SNLRRHLR   44 (50)
T ss_pred             HHHHHHHH
Confidence            44555554

DNA-binding domain in chromatin-boundary-element-binding proteins and transposases

>PF15269 zf-C2H2_7: Zinc-finger

Probab=80.83  E-value=1.3  Score=17.75  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=17.9

Q ss_pred             cccccchhhhcCcHHHHHHHHHh
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~   55 (82)
                      |.|-+|.......+.|-.||...
T Consensus        21 ykcfqcpftc~~kshl~nhmky~   43 (54)
T PF15269_consen   21 YKCFQCPFTCNEKSHLFNHMKYS   43 (54)
T ss_pred             ceeecCCcccchHHHHHHHHHHH
Confidence            57778877777888888888754

>PF02892 zf-BED: BED zinc finger; InterPro: IPR003656 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.81  E-value=2.5  Score=16.40  Aligned_cols=19  Identities=32%  Similarity=0.511  Sum_probs=8.1

Q ss_pred             ccccchhhhcC----cHHHHHHH
Q psy6273          34 ACDQCVSYFKT----NSALLQHK   52 (82)
Q Consensus        34 ~c~~c~~~~~~----~~~l~~h~   52 (82)
                      .|..|+..+..    .++|..|+
T Consensus        18 ~C~~C~~~~~~~~~~ts~l~~HL   40 (45)
T PF02892_consen   18 KCKYCGKVIKYSSGGTSNLKRHL   40 (45)
T ss_dssp             EETTTTEE-----SSTHHHHHHH
T ss_pred             EeCCCCeEEeeCCCcHHHHHHhh
Confidence            45555544333    24555555

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents predicted BED-type zinc finger domains. The BED finger which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain []. Some proteins known to contain a BED domain include animal, plant and fungi AC1 and Hobo-like transposases; Caenorhabditis elegans Dpy-20 protein, a predicted cuticular gene transcriptional regulator; Drosophila BEAF (boundary element-associated factor), thought to be involved in chromatin insulation; Drosophila DREF, a transcriptional regulator for S-phase genes; and tobacco 3AF1 and tomato E4/E8-BP1, light- and ethylene-regulated DNA binding proteins that contain two BED fingers. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding; PDB: 2DJR_A 2CT5_A.

>KOG1280|consensus

Probab=80.72  E-value=2.5  Score=24.61  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=26.8

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCG   69 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~   69 (82)
                      ..|.|+.|+..-.....+..|....+.+...-..|+.|+
T Consensus        78 qSftCPyC~~~Gfte~~f~~Hv~s~Hpda~~~~icp~c~  116 (381)
T KOG1280|consen   78 QSFTCPYCGIMGFTERQFGTHVLSQHPEASTSVICPLCA  116 (381)
T ss_pred             ccccCCcccccccchhHHHHHhhhcCcccCcceeeeccc
Confidence            468888888877777888888877665533344556554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	1e-04
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	4e-04

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 35.5 bits (82), Expect = 1e-04
 Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 4  YKCHACDVETKTRQALDNHILCVHTET---KSFACDQCVSYFKTNSALLQHKRKMHDE 58
           +C  C    + + +L+ H    H ET     F C+ C   F+   ++  H+ K H  
Sbjct: 8  LQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPA 64

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 Length = 77

 Score = 34.4 bits (80), Expect = 4e-04
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH 81
           H+  K + C  C + F  +  +  H  + H E V  F CP C  V        +H
Sbjct: 9  THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.94
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.92
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.91
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.91
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.91
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.9
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.9
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.89
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.89
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.89
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.88
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.88
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.88
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.87
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.87
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.87
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.87
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.86
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.86
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.86
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.85
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.84
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.84
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.84
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.84
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.83
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.82
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.82
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.81
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.81
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.81
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.8
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.8
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.8
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.77
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.75
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.74
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.74
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.74
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.74
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.73
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.73
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	99.73
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	99.73
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.72
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.72
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.71
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.71
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.71
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.71
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.7
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.7
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.69
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	99.69
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.69
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.69
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.67
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	99.66
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	99.66
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.65
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.65
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	99.65
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.65
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.64
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	99.64
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.64
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.63
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.61
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.61
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.6
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	99.6
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.6
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	99.59
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.59
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	99.58
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.58
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.58
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.58
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.57
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.57
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.57
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.57
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.57
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.57
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.57
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.56
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.56
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.56
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.56
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.56
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.56
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.56
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.56
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.56
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.56
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.56
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.55
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.55
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.55
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.55
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.55
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.55
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.55
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.55
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.55
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.55
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.55
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.55
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.55
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.55
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.55
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.54
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.54
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.54
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.54
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.54
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.54
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.54
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.54
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.54
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.54
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.53
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.53
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.53
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.53
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.53
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.52
2epa_A	72	Krueppel-like factor 10; transforming growth facto	99.52
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.51
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.5
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.5
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.5
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.49
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	99.48
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.47
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.47
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.47
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.47
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.47
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.46
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.46
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.45
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.45
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.45
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.45
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.45
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.45
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.45
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.44
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.44
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.44
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.43
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.43
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.43
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.43
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	99.43
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.43
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.43
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.42
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.42
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.42
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.42
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.42
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.42
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.41
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.41
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.41
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.4
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.4
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.4
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.39
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.39
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.38
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.38
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	99.38
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.38
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.38
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	99.38
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	99.38
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	99.38
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.37
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.37
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.37
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.37
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.37
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.37
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.37
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	99.37
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.36
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.36
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	99.36
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.36
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.36
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.36
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.36
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.36
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.36
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.35
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.35
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.35
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.35
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.35
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.34
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.34
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	99.34
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.34
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.34
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.33
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	99.33
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.33
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.33
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.33
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.32
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.32
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.32
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.31
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.3
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	99.3
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.3
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	99.29
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.28
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	99.27
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.26
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.25
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	99.25
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.25
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.25
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	99.25
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	99.25
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.25
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	99.25
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	99.24
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.24
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.24
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.24
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.24
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.23
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.23
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.23
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.23
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	99.23
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.22
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	99.22
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	99.22
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	99.22
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	99.22
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.22
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	99.21
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	99.21
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	99.2
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.2
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	99.2
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.2
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.2
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	99.2
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	99.2
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.19
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.19
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	99.19
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	99.19
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	99.18
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	99.17
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	99.16
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.15
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	99.15
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	99.13
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	99.13
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.13
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.13
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	99.12
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.12
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	99.11
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	99.1
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	99.09
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	99.09
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	99.06
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.03
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	99.01
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	99.0
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.98
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.98
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.96
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.95
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.94
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.94
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.93
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.91
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.9
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	98.89
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.87
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.87
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.87
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.85
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.85
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.84
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.84
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.83
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.82
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.82
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.82
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.82
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.82
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	98.79
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.77
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.25
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.76
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.76
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.75
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	98.74
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.73
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.73
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	98.73
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.73
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	98.73
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.72
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.19
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.72
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.72
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.71
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.71
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.7
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	98.7
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	98.69
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	98.69
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.66
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.64
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	98.06
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	98.06
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	98.62
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.05
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	98.61
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	98.03
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.6
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	98.59
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.53
1paa_A	30	Yeast transcription factor ADR1; transcription reg	98.51
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	98.46
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	98.35
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	98.24
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	97.85
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.77
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	97.45
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	97.27
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	97.21
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	96.83
1wjv_A	79	Cell growth regulating nucleolar protein LYAR; DNA	96.71
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	96.66
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	95.66
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.63
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	94.19
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	94.18
2elu_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	93.93
2gmg_A	105	Hypothetical protein PF0610; winged-helix like pro	93.73
1yuz_A	202	Nigerythrin; rubrythrin, rubredoxin, hemerythrin,	92.75
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	91.82
3ttc_A	657	HYPF, transcriptional regulatory protein; Zn finge	90.93
3pwf_A	170	Rubrerythrin; non heme iron peroxidases, oxidative	90.3
2yrk_A	55	Zinc finger homeobox protein 4; structure genomics	90.23
4g9i_A	772	Hydrogenase maturation protein HYPF; zinc finger,	90.01
3vth_A	761	Hydrogenase maturation factor; carbamoyltransfer,	89.78
1lko_A	191	Rubrerythrin all-iron(II) form; reduced form, DIIR	88.02
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	87.36
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	87.36
1vq8_Z	83	50S ribosomal protein L37AE; ribosome 50S, protein	86.91
2k5c_A	95	Uncharacterized protein PF0385; structural genomic	86.52
2i5o_A	39	DNA polymerase ETA; zinc finger, DNA polymerase,PO	85.94
6rxn_A	46	Rubredoxin; electron transfer(iron-sulfur protein)	82.53
1wir_A	121	Protein arginine N-methyltransferase 3; C2H2 zinc	81.14
1wys_A	75	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	81.01
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	80.72
2odx_A	80	Cytochrome C oxidase polypeptide IV; all beta-prot	80.03

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.94  E-value=3.2e-28  Score=117.59  Aligned_cols=79  Identities=23%  Similarity=0.416  Sum_probs=75.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKI   80 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   80 (82)
                      ++||.|.+|++.|.....|..|++ +|.++++|.|+.|++.|.....|..|++.|+++  +||.|..|++.|...+.|..
T Consensus        20 ek~y~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~   96 (133)
T 2lt7_A           20 RVYYICIVCKRSYVCLTSLRRHFN-IHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGE--RRYQCLACGKSFINYQFMSS   96 (133)
T ss_dssp             EEEEEETTTCCEESCHHHHHHHHH-HHHCCSCEECSSSSCEESSHHHHHHHHHHHHTC--CCEEESSSCCEESSHHHHHH
T ss_pred             CcCeECCCCCCCcCCHHHHHHHHH-HcCCCCCeeCCccCeecccccchhhhccccCCC--ccccCCCCCCCcCCHHHHHH
Confidence            368999999999999999999998 999999999999999999999999999999999  99999999999999999988


Q ss_pred             cC
Q psy6273          81 HH   82 (82)
Q Consensus        81 H~   82 (82)
                      |+
T Consensus        97 H~   98 (133)
T 2lt7_A           97 HI   98 (133)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.92  E-value=2.3e-25  Score=102.18  Aligned_cols=79  Identities=27%  Similarity=0.482  Sum_probs=75.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKI   80 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   80 (82)
                      ++||.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++.|.++  ++|.|..|++.|.....|..
T Consensus         6 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~   82 (96)
T 2dmd_A            6 SGPHKCEVCGKCFSRKDKLKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDE--RPFKCQICPYASRNSSQLTV   82 (96)
T ss_dssp             CCCCCBTTTTBCCCCHHHHHHHGG-GCCCCCSEECSSSCCEESSHHHHHHHHHHSCCC--CCEECSSSSCEESSHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHH-hcCCCCCEeCCCCCCccCCHHHHHHHHHHhCCC--CCccCCCCCCccCCHHHHHH
Confidence            478999999999999999999998 999999999999999999999999999999999  99999999999999999988


Q ss_pred             cC
Q psy6273          81 HH   82 (82)
Q Consensus        81 H~   82 (82)
                      |+
T Consensus        83 H~   84 (96)
T 2dmd_A           83 HL   84 (96)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.91  E-value=2e-25  Score=99.77  Aligned_cols=77  Identities=25%  Similarity=0.625  Sum_probs=73.9

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      ||.|..|++.|.....|..|+. .|.+++++.|..|++.|.....|..|++.|.++  ++|.|..|++.|...+.|..|+
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~   77 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGE--KPHKCQVCGKAFSQSSNLITHS   77 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH-HHHTCCCEECSSSCCEESSHHHHHHHHHHHHTC--CCEECTTTSCEESSHHHHHHHH
T ss_pred             CccCCCCcccccCchhHHHHHH-HcCCCCCeeCCcCChhhCCHHHHHHHHHHhcCC--CCCcCCCcchhhCChHHHHHHH
Confidence            6899999999999999999998 899999999999999999999999999999999  9999999999999999998874

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.91  E-value=6.3e-25  Score=100.57  Aligned_cols=81  Identities=22%  Similarity=0.422  Sum_probs=75.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKI   80 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   80 (82)
                      +++|.|..|++.|.....|..|+. .|.++++|.|..|++.|.....|..|++.|.++..++|.|..|++.|.....|..
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~~~~~L~~   83 (95)
T 2yt9_A            5 SSGVACEICGKIFRDVYHLNRHKL-SHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG   83 (95)
T ss_dssp             CSCEECSSSCCEESSSHHHHHHHH-HSCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBSSHHHHHH
T ss_pred             CCCeECCCCCCccCChHHHHHHHH-hcCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhCCHHHHHH
Confidence            478999999999999999999998 9999999999999999999999999999999864479999999999999999988


Q ss_pred             cC
Q psy6273          81 HH   82 (82)
Q Consensus        81 H~   82 (82)
                      |+
T Consensus        84 H~   85 (95)
T 2yt9_A           84 HI   85 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.91  E-value=3.2e-25  Score=100.64  Aligned_cols=79  Identities=32%  Similarity=0.638  Sum_probs=74.5

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccc
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGY   78 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l   78 (82)
                      ++||.|+  .|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++.|.++  ++|.|..|++.|...+.|
T Consensus         2 ~k~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l   78 (90)
T 1a1h_A            2 ERPYACPVESCDRRFSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDER   78 (90)
T ss_dssp             -CCEECCSSSCCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC--CCEECTTTCCEESSHHHH
T ss_pred             CCceECCCCCCCCccCCHHHHHHHHH-HhCCCCCccCCCCCcccCCHHHHHHHHHHcCCC--CCccCCCCCchhCCHHHH
Confidence            5799998  69999999999999998 999999999999999999999999999999999  999999999999999999


Q ss_pred             cccC
Q psy6273          79 KIHH   82 (82)
Q Consensus        79 ~~H~   82 (82)
                      ..|+
T Consensus        79 ~~H~   82 (90)
T 1a1h_A           79 KRHT   82 (90)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8874

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.90  E-value=5.8e-25  Score=102.44  Aligned_cols=79  Identities=24%  Similarity=0.516  Sum_probs=75.2

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKI   80 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   80 (82)
                      +++|.|..|++.|.....|..|+. .|.++++|.|..|++.|.....|..|++.|.++  ++|.|..|++.|.....|..
T Consensus        15 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~~   91 (106)
T 2ee8_A           15 KKEFICKFCGRHFTKSYNLLIHER-THTDERPYTCDICHKAFRRQDHLRDHRYIHSKE--KPFKCQECGKGFCQSRTLAV   91 (106)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHH-HHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCC--CTTSCSSSCCCCSSHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCCCCccchhCCHHHHHHHHHHhCCC--CCeECCCcCCcccCHHHHHH
Confidence            468999999999999999999998 999999999999999999999999999999999  99999999999999999988


Q ss_pred             cC
Q psy6273          81 HH   82 (82)
Q Consensus        81 H~   82 (82)
                      |+
T Consensus        92 H~   93 (106)
T 2ee8_A           92 HK   93 (106)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.90  E-value=8.5e-25  Score=102.49  Aligned_cols=78  Identities=21%  Similarity=0.501  Sum_probs=74.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKI   80 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   80 (82)
                      ++||.| .|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++.|.++  ++|.|..|++.|.....|.+
T Consensus         8 ~k~~~C-~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~   83 (110)
T 2csh_A            8 DKLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGI--KPYECNICAKRFMWRDSFHR   83 (110)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHH-HHSCCCSEECTTTSCEESSSHHHHHHHTTTCCC--CCEECSSSCCEESCHHHHHH
T ss_pred             CCCEec-cCCCccCCHHHHHHHHH-HcCCCcCccCCCCCcccCCHHHHHHHHHHcCCC--CCeeCCCCcchhcCHHHHHH
Confidence            578999 99999999999999998 999999999999999999999999999999999  99999999999999999988


Q ss_pred             cC
Q psy6273          81 HH   82 (82)
Q Consensus        81 H~   82 (82)
                      |+
T Consensus        84 H~   85 (110)
T 2csh_A           84 HV   85 (110)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.89  E-value=2.9e-24  Score=91.06  Aligned_cols=57  Identities=18%  Similarity=0.413  Sum_probs=54.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ||||.|.+|++.|.....|..|++ +|+++++|.|..|++.|...++|..|+++|+|+
T Consensus         2 EKpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~C~k~F~~~~~L~~H~~~Htge   58 (60)
T 4gzn_C            2 ERPFFCNFCGKTYRDASGLSRHRR-AHLGYRPRSCPECGKCFRDQSEVNRHLKVHQNK   58 (60)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHHTCCCEECTTTCCEESSHHHHHHHGGGGSCC
T ss_pred             CCCccCCCCCCEeCCHHHHHHHHH-HhCCCcCeECCCCCCCcCCHHHHHHHhCccCCC
Confidence            699999999999999999999998 999999999999999999999999999999987

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.89  E-value=2.1e-23  Score=99.30  Aligned_cols=79  Identities=19%  Similarity=0.407  Sum_probs=63.3

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhh---CCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCV---HTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQG   77 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~---~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~   77 (82)
                      ++||.|..|++.|.....|..|+. .   +.++++|.|..|++.|.....|..|++.|.++  +||.|..|++.|.....
T Consensus        33 ~~~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~  109 (124)
T 2dlq_A           33 EKPFECPKCGKCYFRKENLLEHEA-RNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGE--MPYKCSSCSQQFMQKKD  109 (124)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHH-HCCCCSCCCCEECSSSCCEESSHHHHHHHHHHHSSS--CSEECSSSCCEESSHHH
T ss_pred             CCCeECCCCCchhcCHHHHHHHHh-hhhcCCCCCCeECCCCCCccCCHHHHHHHHHHcCCC--CCccCCCccchhCCHHH
Confidence            357788888888888888888876 4   45677788888888888888888888888888  88888888888888888


Q ss_pred             ccccC
Q psy6273          78 YKIHH   82 (82)
Q Consensus        78 l~~H~   82 (82)
                      |.+|+
T Consensus       110 l~~H~  114 (124)
T 2dlq_A          110 LQSHM  114 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87763

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.89  E-value=2.7e-23  Score=94.09  Aligned_cols=78  Identities=26%  Similarity=0.521  Sum_probs=73.7

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhCCCCCccccc--cchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccc
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVHTETKSFACD--QCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQG   77 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~   77 (82)
                      ++|.|..  |++.|.....|..|+. .|.++++|.|+  .|++.|.....|..|++.|.++  ++|.|..|++.|...+.
T Consensus         4 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~   80 (89)
T 2wbs_A            4 ATHTCDYAGCGKTYTKSSHLKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGH--RPFQCQKCDRAFSRSDH   80 (89)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHT-TSCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCC--CCEECSSSSCEESSHHH
T ss_pred             CCeeCCCCCCCCcCCCHHHHHHHHH-hcCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCC--CCccCCCCCcccCCHHH
Confidence            5789999  9999999999999998 99999999997  6999999999999999999999  99999999999999999


Q ss_pred             ccccC
Q psy6273          78 YKIHH   82 (82)
Q Consensus        78 l~~H~   82 (82)
                      |..|+
T Consensus        81 l~~H~   85 (89)
T 2wbs_A           81 LALHM   85 (89)
T ss_dssp             HHHHG
T ss_pred             HHHHH
Confidence            98875

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.88  E-value=1.2e-23  Score=99.55  Aligned_cols=77  Identities=30%  Similarity=0.600  Sum_probs=50.8

Q ss_pred             CCcccC--cCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec--CcccccccCccc
Q psy6273           2 TRYKCH--ACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC--PLCGEVFRSHQG   77 (82)
Q Consensus         2 k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C--~~C~~~f~~~~~   77 (82)
                      +||.|.  .|++.|.....|..|+. .|.++++|.|..|++.|.....|..|++.|+++  ++|.|  +.|++.|...+.
T Consensus        35 ~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f~~~~~  111 (119)
T 2jp9_A           35 KPYQCDFKDCERRFSRSDQLKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGE--KPFSCRWPSCQKKFARSDE  111 (119)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHTC--CCEECCSTTCCCEESSHHH
T ss_pred             CCccCCCCCCcCccCCHHHHHHHHH-HcCCCCCccCCccCchhCCHHHHHHHHHHhcCC--CCeeCCCCCCccccCCHHH
Confidence            456666  56666666666666666 666666666666666666666666666666666  66666  566666666666


Q ss_pred             cccc
Q psy6273          78 YKIH   81 (82)
Q Consensus        78 l~~H   81 (82)
                      |.+|
T Consensus       112 L~~H  115 (119)
T 2jp9_A          112 LVRH  115 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6655

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.88  E-value=1.2e-23  Score=106.33  Aligned_cols=78  Identities=27%  Similarity=0.618  Sum_probs=62.6

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      +||.|..|++.|.....|..|+. .|.++++|.|+.|++.|.....|..|++.|+++  +||.|+.|++.|.....|..|
T Consensus       104 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~--~~~~C~~C~~~f~~~~~L~~H  180 (190)
T 2i13_A          104 KPYACPECGKSFSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGE--KPYKCPECGKSFSRRDALNVH  180 (190)
T ss_dssp             CCEECTTTCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHHHHHCC--CCEECTTTCCEESSHHHHHHH
T ss_pred             CCCcCCCCCCccCCHHHHHHHHH-HhCCCCCeECCCCCcccCCHHHHHHHHHhcCCC--CCeECCCCCCccCCHHHHHHH
Confidence            56778888888888888888877 777778888888888888888888888888877  788888888888888887766


Q ss_pred             C
Q psy6273          82 H   82 (82)
Q Consensus        82 ~   82 (82)
                      +
T Consensus       181 ~  181 (190)
T 2i13_A          181 Q  181 (190)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.88  E-value=7.8e-25  Score=99.20  Aligned_cols=78  Identities=23%  Similarity=0.348  Sum_probs=73.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKI   80 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   80 (82)
                      ++||.|..|++.|.....|..|+. +|.++++|.|..|++.|.....|..|++.+++   .+|.|..|++.|.....|..
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~---~~~~c~~C~~~f~~~~~L~~   76 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHRDIQHI---LPILEDKVEELLSKNYHLEN   76 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHHHHHHHHHHTH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHH-HcCCCCCccCCCCCCccCCHHHHHHHHHHhCC---CcchHHHHHHHHHHHhhhHH
Confidence            689999999999999999999998 89999999999999999999999999999985   69999999999999999988


Q ss_pred             cC
Q psy6273          81 HH   82 (82)
Q Consensus        81 H~   82 (82)
                      |+
T Consensus        77 H~   78 (88)
T 1llm_C           77 EV   78 (88)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.87  E-value=1.7e-23  Score=97.72  Aligned_cols=76  Identities=17%  Similarity=0.340  Sum_probs=70.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKI   80 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~   80 (82)
                      ++||.|..|++.|.....|..|++ .|  .++|.|..|++.|.....|..|+. |.++  +||.|..|++.|.....|.+
T Consensus        14 ~~~~~C~~C~~~f~~~~~l~~H~~-~H--~~~~~C~~C~~~f~~~~~l~~H~~-H~~~--~~~~C~~C~~~f~~~~~L~~   87 (107)
T 1wjp_A           14 KEVYQCRLCNAKLSSLLEQGSHER-LC--RNAAVCPYCSLRFFSPELKQEHES-KCEY--KKLTCLECMRTFKSSFSIWR   87 (107)
T ss_dssp             CCCCBCTTTCCBCSSHHHHHHHHH-HH--HHSBCCTTTCCCBSSHHHHHHHHH-HCST--GGGEEGGGTEECSSHHHHHH
T ss_pred             CcCeECCCCCCccCCHHHHHHHHH-HC--CCCccCCCCCCccCCHHHHHHHHH-cCCC--CCccCccccchhCCHHHHHH
Confidence            478999999999999999999998 77  468999999999999999999996 9998  99999999999999999988


Q ss_pred             cC
Q psy6273          81 HH   82 (82)
Q Consensus        81 H~   82 (82)
                      |+
T Consensus        88 H~   89 (107)
T 1wjp_A           88 HQ   89 (107)
T ss_dssp             HH
T ss_pred             HH
Confidence            74

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.87  E-value=4.5e-23  Score=97.57  Aligned_cols=79  Identities=25%  Similarity=0.506  Sum_probs=74.6

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCCCCccccc--cchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcc
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTETKSFACD--QCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQ   76 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~   76 (82)
                      ++||.|..  |++.|.....|..|+. .|.++++|.|+  .|++.|.....|..|++.|.++  ++|.|..|++.|....
T Consensus         4 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~   80 (119)
T 2jp9_A            4 KRPFMCAYPGCNKRYFKLSHLQMHSR-KHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV--KPFQCKTCQRKFSRSD   80 (119)
T ss_dssp             SCCBCCCSTTSCCCBSCHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCC--CCEECTTTCCEESCHH
T ss_pred             CeeeeCCCCCCcchhCCHHHHHHHHH-hhCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCC--CCccCCccCchhCCHH
Confidence            47899987  9999999999999998 89999999999  7999999999999999999999  9999999999999999


Q ss_pred             cccccC
Q psy6273          77 GYKIHH   82 (82)
Q Consensus        77 ~l~~H~   82 (82)
                      .|..|+
T Consensus        81 ~l~~H~   86 (119)
T 2jp9_A           81 HLKTHT   86 (119)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.87  E-value=8.3e-23  Score=94.17  Aligned_cols=79  Identities=24%  Similarity=0.470  Sum_probs=73.7

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCCCCccccc--cchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcc
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTETKSFACD--QCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQ   76 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~   76 (82)
                      +++|.|..  |++.|.....|..|++ .|.++++|.|.  .|++.|.....|..|++.|+++  ++|.|..|++.|....
T Consensus        13 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~   89 (100)
T 2ebt_A           13 RRIHYCDYPGCTKVYTKSSHLKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGA--KPFQCGVCNRSFSRSD   89 (100)
T ss_dssp             CCCEECCSSSCCCEESCHHHHHHHHH-HHSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSC--CSCBCSSSCCBCSSHH
T ss_pred             CcceEcCCCCCCCcccCHHHHHHHHH-HhCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCC--CCeECCCCcCccCCHH
Confidence            36789986  9999999999999998 89999999996  6999999999999999999999  9999999999999999


Q ss_pred             cccccC
Q psy6273          77 GYKIHH   82 (82)
Q Consensus        77 ~l~~H~   82 (82)
                      .|..|+
T Consensus        90 ~l~~H~   95 (100)
T 2ebt_A           90 HLALHM   95 (100)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.87  E-value=1.3e-22  Score=96.66  Aligned_cols=79  Identities=28%  Similarity=0.475  Sum_probs=67.2

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHHHHhcCCCCCeeecC--cccccccCcc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDEFVNLFSCP--LCGEVFRSHQ   76 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~~C~--~C~~~f~~~~   76 (82)
                      +++|.|..|++.|.....|..|+. .|.++++|.|..  |++.|.....|..|++.|.++  ++|.|+  .|++.|...+
T Consensus        32 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f~~~~  108 (124)
T 1ubd_C           32 PRVHVCAECGKAFVESSKLKRHQL-VHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGD--RPYVCPFDGCNKKFAQST  108 (124)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHGG-GTSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCC--CCCCCCSTTCCCCCSSTT
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH-HcCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCC--CceECCCCCCCCccCCHH
Confidence            367888889888888888888887 888888888875  999998889999999888888  889995  4999999888


Q ss_pred             cccccC
Q psy6273          77 GYKIHH   82 (82)
Q Consensus        77 ~l~~H~   82 (82)
                      .|..|+
T Consensus       109 ~L~~H~  114 (124)
T 1ubd_C          109 NLKSHI  114 (124)
T ss_dssp             TTHHHH
T ss_pred             HHHHHH
Confidence            888774

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.86  E-value=4.4e-22  Score=88.38  Aligned_cols=71  Identities=25%  Similarity=0.449  Sum_probs=65.5

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHHHHhcCCCCCeeecCccccccc
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFR   73 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~   73 (82)
                      +++|.|..  |++.|.....|..|++..|.++++|.|..  |++.|.....|..|++.|+++  +||.|..|++.|.
T Consensus         5 ~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C~k~F~   79 (79)
T 2dlk_A            5 SSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDT--RDYICEFSGPSSG   79 (79)
T ss_dssp             CSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEECSCTTTCCEESSHHHHHHHHHHHHTS--CCCSCCSSSCCCC
T ss_pred             CCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeECCCCCCcCccCCHHHHHHHHHHhCCC--CCeeCCCCCCCCC
Confidence            46888886  99999999999999873588999999998  999999999999999999999  9999999999984

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.86  E-value=2.5e-22  Score=95.50  Aligned_cols=79  Identities=27%  Similarity=0.594  Sum_probs=73.1

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHH---hcCCCCCeeecCcccccccCccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRK---MHDEFVNLFSCPLCGEVFRSHQG   77 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~---~~~~~~~~~~C~~C~~~f~~~~~   77 (82)
                      +++|.|..|++.|.....|..|+. .|.++++|.|+.|++.|.....|..|+..   +.++  ++|.|..|++.|.....
T Consensus         5 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~--~~~~C~~C~~~f~~~~~   81 (124)
T 2dlq_A            5 SSGVECPTCHKKFLSKYYLKVHNR-KHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSE--QVFTCSVCQETFRRRME   81 (124)
T ss_dssp             CSSCCCTTTCCCCSSHHHHHHHHH-HHSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCC--CCEECSSSCCEESSHHH
T ss_pred             CCCCCCCCCCCcCCCHHHHHHHHH-hCCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCC--CCeECCCCCCccCCHHH
Confidence            478999999999999999999998 99999999999999999999999999996   4566  89999999999999999


Q ss_pred             ccccC
Q psy6273          78 YKIHH   82 (82)
Q Consensus        78 l~~H~   82 (82)
                      |..|+
T Consensus        82 l~~H~   86 (124)
T 2dlq_A           82 LRLHM   86 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98874

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.86  E-value=1.5e-22  Score=102.39  Aligned_cols=77  Identities=31%  Similarity=0.644  Sum_probs=53.8

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      +||.|+.|++.|.....|..|+. .|.++++|.|+.|++.|.....|..|++.|.++  +||.|..|++.|.....|..|
T Consensus        76 ~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~~H  152 (190)
T 2i13_A           76 KPYKCPECGKSFSQRANLRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGE--KPYKCPECGKSFSREDNLHTH  152 (190)
T ss_dssp             CCEECTTTCCEESCHHHHHHHHH-HHHTCCCEECTTTCCEESSHHHHHHHHHHHHCC--CCEECTTTCCEESCHHHHHHH
T ss_pred             CCccCcccCCccCCHHHHHHHHH-hcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCC--CCeECCCCCcccCCHHHHHHH
Confidence            45666667777776666777766 666666777777777777777777777777766  677777777777777766665

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=9e-24  Score=99.64  Aligned_cols=79  Identities=20%  Similarity=0.442  Sum_probs=71.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhh--CCCCCcc-ccccchhhh--cCcHHHHHHHHHhcCCCCCeeecCcccccccCc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCV--HTETKSF-ACDQCVSYF--KTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSH   75 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~--~~~~~~~-~c~~c~~~~--~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~   75 (82)
                      ++||.|..|++.|.....|..|++ .  +.+.+++ .|..|++.|  .....|..|++.|.++  +||.|..|++.|...
T Consensus        17 ~~~~~C~~C~k~f~~~~~L~~H~~-~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~--~~~~C~~C~k~f~~~   93 (115)
T 2dmi_A           17 ASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQ--KVLKCMYCGHSFESL   93 (115)
T ss_dssp             CCSEEBSSSSCEESSHHHHHHHHH-HTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCC--SSCBCSSSCCBCSSH
T ss_pred             CCCEECCccCchhcCHHHHHHHHH-HhCccccCCCccCCCCCcccccccHHHHHHHhhccCCC--cceECCCCCCccCCH
Confidence            478999999999999999999998 7  6666655 499999988  8889999999999999  999999999999999


Q ss_pred             ccccccC
Q psy6273          76 QGYKIHH   82 (82)
Q Consensus        76 ~~l~~H~   82 (82)
                      +.|.+|+
T Consensus        94 ~~L~~H~  100 (115)
T 2dmi_A           94 QDLSVHM  100 (115)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998874

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.85  E-value=2.4e-22  Score=85.12  Aligned_cols=52  Identities=29%  Similarity=0.597  Sum_probs=49.7

Q ss_pred             CCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          29 ETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        29 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .|+||.|..|++.|...+.|..|+++|+++  +||.|..||++|...+.|.+|+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~Ht~e--kp~~C~~C~k~F~~~~~L~~H~   52 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRAHLGY--RPRSCPECGKCFRDQSEVNRHL   52 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHHHHTC--CCEECTTTCCEESSHHHHHHHG
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHHhCCC--cCeECCCCCCCcCCHHHHHHHh
Confidence            378999999999999999999999999999  9999999999999999999885

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.84  E-value=7.9e-22  Score=96.90  Aligned_cols=79  Identities=24%  Similarity=0.526  Sum_probs=64.3

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHH-HHhcCCCCCeeecCc--cccccc
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHK-RKMHDEFVNLFSCPL--CGEVFR   73 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~-~~~~~~~~~~~~C~~--C~~~f~   73 (82)
                      ++||.|..  |++.|.....|..|++ .|.++++|.|+.  |++.|.....|..|+ +.|.++  +||.|..  |++.|.
T Consensus        65 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~--~~~~C~~~~C~~~f~  141 (155)
T 2gli_A           65 EKPHKCTFEGCRKSYSRLENLKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNE--KPYVCKLPGCTKRYT  141 (155)
T ss_dssp             CCCCCCCSTTCCCCCSSHHHHHHHHH-HTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSC--CCEECCSTTTCCEES
T ss_pred             CCCccCCCCCCCCcccCHHHHHHHHH-HcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCC--CCeeCCCCCCccccC
Confidence            36788874  8888888888888887 788888888887  888888888888887 678877  8888877  888888


Q ss_pred             CcccccccC
Q psy6273          74 SHQGYKIHH   82 (82)
Q Consensus        74 ~~~~l~~H~   82 (82)
                      ..+.|..|+
T Consensus       142 ~~~~L~~H~  150 (155)
T 2gli_A          142 DPSSLRKHV  150 (155)
T ss_dssp             SHHHHHHHH
T ss_pred             CHHHHHHHH
Confidence            888887764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.84  E-value=9.5e-22  Score=93.64  Aligned_cols=78  Identities=23%  Similarity=0.501  Sum_probs=71.6

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc--ccccccCcc
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL--CGEVFRSHQ   76 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~--C~~~f~~~~   76 (82)
                      +++|.|+  .|++.|.+...|..|+. .| ++++|.|..|++.|.....|..|++.|.++  ++|.|..  |++.|....
T Consensus         3 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f~~~~   78 (124)
T 1ubd_C            3 PRTIACPHKGCTKMFRDNSAMRKHLH-TH-GPRVHVCAECGKAFVESSKLKRHQLVHTGE--KPFQCTFEGCGKRFSLDF   78 (124)
T ss_dssp             --CEECCSTTCCCEESSHHHHHHHHG-GG-SCCCEECTTTCCEESSHHHHHHHGGGTSCC--CCEECCSTTCCCEESCHH
T ss_pred             CCcccCCCCCCcCccCCHHHHHHHHH-Hc-CCCCeECCCCCchhCCHHHHHHHHHHcCCC--CCeeCCCCCCcCccCCHH
Confidence            3689999  89999999999999998 88 889999999999999999999999999999  9999986  999999999


Q ss_pred             cccccC
Q psy6273          77 GYKIHH   82 (82)
Q Consensus        77 ~l~~H~   82 (82)
                      .|..|+
T Consensus        79 ~l~~H~   84 (124)
T 1ubd_C           79 NLRTHV   84 (124)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998874

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.84  E-value=2.5e-21  Score=93.44  Aligned_cols=76  Identities=17%  Similarity=0.355  Sum_probs=67.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCC----CCeeecCcccccccCcc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEF----VNLFSCPLCGEVFRSHQ   76 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~----~~~~~C~~C~~~f~~~~   76 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|++.|...+.|..|++.++++.    .++|.|..|++.|....
T Consensus        48 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~~~~~  126 (133)
T 2lt7_A           48 EKKYPCRYCEKVFPLAEYRTKHEI-HHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQIRQY  126 (133)
T ss_dssp             CSCEECSSSSCEESSHHHHHHHHH-HHHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSCCCCC
T ss_pred             CCCeeCCccCeecccccchhhhcc-ccCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchhhhcc
Confidence            579999999999999999999998 9999999999999999999999999999987651    25699999998887554


Q ss_pred             c
Q psy6273          77 G   77 (82)
Q Consensus        77 ~   77 (82)
                      .
T Consensus       127 ~  127 (133)
T 2lt7_A          127 A  127 (133)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.84  E-value=1.4e-21  Score=96.11  Aligned_cols=76  Identities=33%  Similarity=0.526  Sum_probs=57.4

Q ss_pred             cccCcCCccccCHHHHHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHHHHhcCCCCCeeecCc--ccccccCccccc
Q psy6273           4 YKCHACDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDEFVNLFSCPL--CGEVFRSHQGYK   79 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~--C~~~f~~~~~l~   79 (82)
                      |.|..|++.|.....|..|+. .|.++++|.|..  |++.|.....|..|++.|+++  +||.|..  |++.|...+.|.
T Consensus        63 ~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~--~~~~C~~~~C~k~f~~~~~L~  139 (155)
T 2rpc_A           63 EECPREGKSFKAKYKLVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGE--KPFKCEFEGCDRRFANSSDRK  139 (155)
T ss_dssp             TTCTTSSCCCSSHHHHHHHTH-HHHCCCSEECSCTTTCCEESCHHHHHHHHTTTCSS--CSBCCSSTTCCCCBSSHHHHH
T ss_pred             cCCCCcccccCCHHHHHHHHH-hcCCCCcccCCcCCCCCccCCHHHHHHHHHhhCCC--CCccCCCCCCCCccCCHHHHH
Confidence            567777777777777777776 777777777776  777777777777777777777  7777775  777777777777


Q ss_pred             ccC
Q psy6273          80 IHH   82 (82)
Q Consensus        80 ~H~   82 (82)
                      +|+
T Consensus       140 ~H~  142 (155)
T 2rpc_A          140 KHM  142 (155)
T ss_dssp             HSS
T ss_pred             HHH
Confidence            764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.83  E-value=5.9e-21  Score=84.46  Aligned_cols=62  Identities=31%  Similarity=0.516  Sum_probs=59.1

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      ++||.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++.|+++  +||.|
T Consensus        16 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~--~p~~C   77 (77)
T 2cot_A           16 RRRYKCDECGKSFSHSSDLSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGS--GPSSG   77 (77)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT-TTCCSCSEECSSSCCEESSHHHHHHHGGGSCCC--CCCCC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHH-HcCCCcCeeCCCCCCccCCHHHHHHHHHHhCCC--CCCCC
Confidence            478999999999999999999998 999999999999999999999999999999999  99987

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.82  E-value=3.5e-21  Score=86.32  Aligned_cols=74  Identities=26%  Similarity=0.502  Sum_probs=69.6

Q ss_pred             Cccc--CcCCccccCHHHHHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHHHHhcCCCCCeeecCc---ccccccCc
Q psy6273           3 RYKC--HACDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDEFVNLFSCPL---CGEVFRSH   75 (82)
Q Consensus         3 ~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~---C~~~f~~~   75 (82)
                      ||.|  ..|++.|.....|..|++ +|.++++|.|+.  |++.|.....|..|++.|++     |.|..   |++.|...
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-----~~C~~~~~C~~~f~~~   74 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-----YPCKKDDSCSFVGKTW   74 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHH-HHHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-----EECCSCSSCCCEESSH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHH-HhCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-----CCCCCCCCCCCccCCH
Confidence            6899  899999999999999998 999999999988  99999999999999999986     89999   99999999


Q ss_pred             ccccccC
Q psy6273          76 QGYKIHH   82 (82)
Q Consensus        76 ~~l~~H~   82 (82)
                      +.|..|+
T Consensus        75 ~~l~~H~   81 (85)
T 2j7j_A           75 TLYLKHV   81 (85)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998874

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.82  E-value=1.5e-20  Score=87.07  Aligned_cols=67  Identities=22%  Similarity=0.374  Sum_probs=60.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhC---CCCCccccccchhhhcCcHHHHHH-HHHhcCCCCCeeecCccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVH---TETKSFACDQCVSYFKTNSALLQH-KRKMHDEFVNLFSCPLCG   69 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~---~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~~~~~~~C~~C~   69 (82)
                      ++||.|..|++.|.....|..|++..|   .++++|.|..|++.|...+.|..| ++.|+++  +||.|..+.
T Consensus        16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~~~~~L~~H~~r~Htge--kpy~C~~~~   86 (102)
T 2ghf_A           16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGE--ENFKLTMVK   86 (102)
T ss_dssp             CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEESSTHHHHTHHHHTSTTC--CCEEEEECC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccCCHHHHHHHHHHhcCCC--CCeeCCccc
Confidence            589999999999999999999986248   568999999999999999999999 8999999  999998753

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.81  E-value=1.3e-20  Score=95.20  Aligned_cols=78  Identities=23%  Similarity=0.552  Sum_probs=54.1

Q ss_pred             CCcccC--cCCccccCHHHHHhHHHhhC-CCCCcccc--ccchhhhcCcHHHHHHHHHhcCCCCCeeecCc--ccccccC
Q psy6273           2 TRYKCH--ACDVETKTRQALDNHILCVH-TETKSFAC--DQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL--CGEVFRS   74 (82)
Q Consensus         2 k~~~c~--~c~~~~~~~~~l~~h~~~~~-~~~~~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~--C~~~f~~   74 (82)
                      +||.|.  .|++.|.+...|..|+...| .++.+|.|  ..|++.|.....|..|++.|+++  +||.|+.  |++.|..
T Consensus        71 ~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~~~C~k~F~~  148 (190)
T 1tf6_A           71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQ--LPYECPHEGCDKRFSL  148 (190)
T ss_dssp             CCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSS--CSSBCCSSSCCCBCSS
T ss_pred             CceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCC--CCccCCCCCCCchhcC
Confidence            466676  67777777777777763255 35566777  66777777777777777777777  7777766  7777777


Q ss_pred             ccccccc
Q psy6273          75 HQGYKIH   81 (82)
Q Consensus        75 ~~~l~~H   81 (82)
                      .+.|..|
T Consensus       149 ~~~L~~H  155 (190)
T 1tf6_A          149 PSRLKRH  155 (190)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777665

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.81  E-value=2.4e-20  Score=91.66  Aligned_cols=78  Identities=28%  Similarity=0.514  Sum_probs=71.0

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhh-CCCCCc--------cccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc--ccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCV-HTETKS--------FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL--CGE   70 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~-~~~~~~--------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~--C~~   70 (82)
                      .+|.|..|++.|.+...|..|+. . |.+..+        +.|..|++.|.....|..|++.|.++  ++|.|..  |++
T Consensus        24 ~~~~C~~C~~~f~~~~~L~~H~~-~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~  100 (155)
T 2rpc_A           24 LSRPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE--KPFPCPFPGCGK  100 (155)
T ss_dssp             CSSSCCCCCCCBSSHHHHHHHHH-TTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCC--CSEECSCTTTCC
T ss_pred             cccccccCCcccCCHHHHHHHHH-hhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCC--CcccCCcCCCCC
Confidence            56889999999999999999998 5 776654        78999999999999999999999999  9999998  999


Q ss_pred             cccCcccccccC
Q psy6273          71 VFRSHQGYKIHH   82 (82)
Q Consensus        71 ~f~~~~~l~~H~   82 (82)
                      .|.....|..|+
T Consensus       101 ~f~~~~~L~~H~  112 (155)
T 2rpc_A          101 IFARSENLKIHK  112 (155)
T ss_dssp             EESCHHHHHHHH
T ss_pred             ccCCHHHHHHHH
Confidence            999999998774

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.81  E-value=1.1e-20  Score=95.44  Aligned_cols=77  Identities=29%  Similarity=0.550  Sum_probs=47.1

Q ss_pred             CCccc--CcCCccccCHHHHHhHHHhhCCCCCcccc--ccchhhhcCcHHHHHHHHHhcCCCCCeeecC--cccccccCc
Q psy6273           2 TRYKC--HACDVETKTRQALDNHILCVHTETKSFAC--DQCVSYFKTNSALLQHKRKMHDEFVNLFSCP--LCGEVFRSH   75 (82)
Q Consensus         2 k~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~--~C~~~f~~~   75 (82)
                      ++|.|  +.|++.|.....|..|++ .|.++++|.|  ..|++.|.....|..|++.|.++  ++|.|.  .|++.|...
T Consensus        11 ~~~~C~~~~C~~~f~~~~~L~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f~~~   87 (190)
T 1tf6_A           11 KRYICSFADCGAAYNKNWKLQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE--KNFTCDSDGCDLRFTTK   87 (190)
T ss_dssp             CCCBCSSTTTCCBCSSHHHHHHHHH-HHHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTC--CCEECCSSSCCCEESCH
T ss_pred             cceeCCCCCCcchhCCHHHHHHHHH-hcCCCCCccCCCCCCChhhCCHHHHHHHHHHccCC--CceeCCCCCCCCccCCH
Confidence            45566  456666666666666665 5666666666  55666666666666666666665  566666  566666666


Q ss_pred             cccccc
Q psy6273          76 QGYKIH   81 (82)
Q Consensus        76 ~~l~~H   81 (82)
                      ..|..|
T Consensus        88 ~~l~~H   93 (190)
T 1tf6_A           88 ANMKKH   93 (190)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            655554

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.80  E-value=8e-20  Score=80.22  Aligned_cols=60  Identities=28%  Similarity=0.561  Sum_probs=53.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCee
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF   63 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~   63 (82)
                      +++|.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++.|+++  +||
T Consensus        15 ~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--kp~   74 (74)
T 2lce_A           15 DKPYKCDRCQASFRYKGNLASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGE--KPY   74 (74)
T ss_dssp             CCSBCCTTSSCCBSCHHHHHHHHH-HHCCCCSEECTTTCCEESCHHHHHHHHHHHCCS--CCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHH-HcCCCCCEECCCCCchhCCHHHHHHHHHhcCCC--CCC
Confidence            468899999999999999999988 888889999999999999999999999999988  775

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.80  E-value=3.8e-20  Score=90.91  Aligned_cols=78  Identities=23%  Similarity=0.380  Sum_probs=58.7

Q ss_pred             CCcccCc-----CCccccCHHHHHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHHHHhcCCCCCeeecCc--ccccc
Q psy6273           2 TRYKCHA-----CDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDEFVNLFSCPL--CGEVF   72 (82)
Q Consensus         2 k~~~c~~-----c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~--C~~~f   72 (82)
                      +||.|..     |++.|.....|..|+. .|.++++|.|..  |++.|.....|..|++.|.++  +||.|+.  |++.|
T Consensus        33 ~~~~C~~c~C~~c~~~f~~~~~l~~H~~-~h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f  109 (155)
T 2gli_A           33 KEFVCHWGGCSRELRPFKAQYMLVVHMR-RHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGE--KPYMCEHEGCSKAF  109 (155)
T ss_dssp             SCCCCCBTTCTTTTCCCSSHHHHHHHTH-HHHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTC--CCEECCSTTCCCEE
T ss_pred             cceeCCCCCccchhhhhhhHHHHHHHHH-hcCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCC--CCeeCCCCCCCCcc
Confidence            4565553     3477777777777776 777777888864  888888888888888888877  7888887  88888


Q ss_pred             cCcccccccC
Q psy6273          73 RSHQGYKIHH   82 (82)
Q Consensus        73 ~~~~~l~~H~   82 (82)
                      ...+.|..|+
T Consensus       110 ~~~~~L~~H~  119 (155)
T 2gli_A          110 SNASDRAKHQ  119 (155)
T ss_dssp             SSSSTTHHHH
T ss_pred             CCHHHHHHHH
Confidence            8888877663

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.80  E-value=1.8e-19  Score=80.95  Aligned_cols=69  Identities=20%  Similarity=0.399  Sum_probs=62.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC----CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET----KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF   72 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~----~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f   72 (82)
                      ++||.|..|++.|.....|..|+. .+...    ++|.|..|++.|.....|..|++.|+++  +++.|..|+.+|
T Consensus        13 ~k~~~C~~C~~~f~~~~~l~~H~~-~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~--~~~~~~~~~~~~   85 (86)
T 1x6h_A           13 EKPYACSHCDKTFRQKQLLDMHFK-RYHDPNFVPAAFVCSKCGKTFTRRNTMARHADNCAGP--DGVEGENSGPSS   85 (86)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH-HTTCSSCCCCCEECSSSCCEESCHHHHHHHHHHCCCC--CSCCCCCCCCCC
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHH-HhcCCcCCCcceECCCCCChhCCHHHHHHHHHHccCC--CCcccCCCCCCC
Confidence            478999999999999999999987 55554    7899999999999999999999999999  999999998765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.77  E-value=6.9e-19  Score=76.47  Aligned_cols=60  Identities=27%  Similarity=0.435  Sum_probs=55.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCee
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF   63 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~   63 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|++.|.....|..|++.|+++  +|.
T Consensus         7 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C~~~f~~~~~L~~H~~~h~~~--~p~   66 (70)
T 1x5w_A            7 GHPEKCSECSYSCSSKAALRIHER-IHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD--MSG   66 (70)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHG-GGCCSCSEECSSSSCEESSHHHHHHHHHHHHSS--SCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH-HcCCCCCEeCCCCCCccCCHHHHHHHHHHHhCC--CCC
Confidence            578999999999999999999998 899999999999999999999999999999988  654

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.75  E-value=2.6e-18  Score=74.99  Aligned_cols=57  Identities=30%  Similarity=0.514  Sum_probs=40.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++||.|..|++.|.....|..|++ .|.++++|.|..|++.|.....|..|++.|+++
T Consensus        12 ~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~   68 (72)
T 1x6e_A           12 EKPYGCVECGKAFSRSSILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSG   68 (72)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-GGGCSCCEECSSSCCEESSHHHHHHHHHHHHSS
T ss_pred             CCCccCCCCCCccCCHHHHHHHHH-hcCCCCCeECCCCCcccCCHHHHHHHHHhcCCC
Confidence            356777777777777777777776 677777777777777777777777777777665

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.74  E-value=4.4e-19  Score=79.72  Aligned_cols=51  Identities=27%  Similarity=0.578  Sum_probs=27.2

Q ss_pred             CCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273          29 ETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        29 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      ..+++.|+.|++.|.....|..|++.|+++  +||.|..|+++|.....|.+|
T Consensus        25 ~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~--k~~~C~~C~k~F~~~~~L~~H   75 (85)
T 2lv2_A           25 SAECHLCPVCGESFASKGAQERHLRLLHAA--QVFPCKYCPATFYSSPGLTRH   75 (85)
T ss_dssp             CCTTEECTTSCCEESSHHHHHHHHHTTSCS--SSEECTTSSCEESSHHHHHHH
T ss_pred             CCCCEECCCCCCCcCcHHHHhhhhhhccCC--CccCCCCCCCEeCCHHHHHHh
Confidence            344455555555555555555555555555  555555555555555555544

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.74  E-value=4.4e-18  Score=71.14  Aligned_cols=55  Identities=29%  Similarity=0.627  Sum_probs=52.3

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ||.|..|++.|.....|..|+. +|.++++|.|..|++.|...+.|..|++.|+++
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   55 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHS   55 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHH-HTSSCCCEECSSSSCEESSHHHHHHHHHSSSSC
T ss_pred             CCcCCCCcCcCCCHHHHHHHHH-hcCCCCCccCCCCCchhcCHHHHHHHHHHhccc
Confidence            7899999999999999999998 899999999999999999999999999999876

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.74  E-value=2.2e-18  Score=72.06  Aligned_cols=55  Identities=22%  Similarity=0.415  Sum_probs=41.1

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ++||.|..|++.|.....|..|+. +|.++++|.|+.|++.|.....|..|++.|+
T Consensus         2 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C            2 SSSRECSYCGKFFRSNYYLNIHLR-THTGEKPYKCEFCEYAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             ---CBCTTTCCBCSCHHHHHHHHH-HHHCCCCEECSSSSCEESSHHHHHHHHHHHC
T ss_pred             CCCccCCCCcchhCChHHHHHHHH-HcCCCCCcCCCCCcchhCCHHHHHHHHHHhc
Confidence            367788888888888888888877 7777777888888888888888888877765

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.74  E-value=2.7e-18  Score=77.13  Aligned_cols=57  Identities=19%  Similarity=0.392  Sum_probs=52.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHH-HhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKR-KMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~   58 (82)
                      .++|.|++|++.|.....|..|++ +|.++++|.|..|++.|...+.|..|++ .|.+|
T Consensus        26 ~~~h~C~~Cgk~F~~~~~L~~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           26 AECHLCPVCGESFASKGAQERHLR-LLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             CTTEECTTSCCEESSHHHHHHHHH-TTSCSSSEECTTSSCEESSHHHHHHHHHTTCTTC
T ss_pred             CCCEECCCCCCCcCcHHHHhhhhh-hccCCCccCCCCCCCEeCCHHHHHHhCcccCcCC
Confidence            367999999999999999999998 9999999999999999999999999975 57665

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=2.3e-19  Score=82.37  Aligned_cols=65  Identities=26%  Similarity=0.464  Sum_probs=37.6

Q ss_pred             ccCHHHHHhHHHhhCCCCCccccccchhhh-cCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273          13 TKTRQALDNHILCVHTETKSFACDQCVSYF-KTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        13 ~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~-~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      +.....+..|+. .+.++++|.|..|++.| .....|..|++.| ++  +||.|..|++.|...+.|..|
T Consensus        16 ~~~~~~~~~~~~-~~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h-~~--k~~~C~~Cgk~F~~~~~L~~H   81 (96)
T 2ctd_A           16 YAAGSLEEQWYL-EIVDKGSVSCPTCQAVGRKTIEGLKKHMENC-KQ--EMFTCHHCGKQLRSLAGMKYH   81 (96)
T ss_dssp             SCTTCHHHHHHH-HHHHTSCEECTTTCSCEESSHHHHHHHHHHH-CC--CCCCCSSSCCCCSSHHHHHHH
T ss_pred             CCCchHHHHHHH-HhcCCCCcCCCCCCCCcccCHHHHHHHHHHH-CC--CCeECCCCCCeeCCHHHHHHH
Confidence            334444555554 45555566666666666 5666666666666 55  566666666666666655555

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=5.8e-20  Score=84.60  Aligned_cols=59  Identities=20%  Similarity=0.401  Sum_probs=28.3

Q ss_pred             HhHHHhhCCCCCccccccchhhhc-CcHHHHHHHHHhcC-CCCCeeecCcccccccCccccccc
Q psy6273          20 DNHILCVHTETKSFACDQCVSYFK-TNSALLQHKRKMHD-EFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        20 ~~h~~~~~~~~~~~~c~~c~~~~~-~~~~l~~h~~~~~~-~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      ..|++ .|.++++|.|..|++.|. ....|..|++.|++ +  ++|.|..|++.|.....|.+|
T Consensus        13 ~~h~~-~h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~--~~~~C~~C~k~F~~~~~L~~H   73 (98)
T 2gqj_A           13 EQWQR-AIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQ--DALKCQHCRKQFKSKAGLNYH   73 (98)
T ss_dssp             SHHHH-TTTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHH--HHHSCSSSCCCCSCHHHHHHH
T ss_pred             HHHHH-HhccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCC--CCEECCCCCCccCCHHHHHHH
Confidence            33444 444444445555554444 44445555444444 4  445555555555444444443

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=7.1e-18  Score=77.39  Aligned_cols=56  Identities=18%  Similarity=0.384  Sum_probs=52.8

Q ss_pred             CCCcccCcCCccc-cCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHH-HHHhcCC
Q psy6273           1 MTRYKCHACDVET-KTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQH-KRKMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~-~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~   58 (82)
                      ++||.|..|++.| ....+|..|++ .| ++++|.|..|++.|.....|..| ++.|+++
T Consensus        32 ~~~~~C~~C~k~F~~~~~~L~~H~~-~h-~~k~~~C~~Cgk~F~~~~~L~~H~~~~H~~~   89 (96)
T 2ctd_A           32 KGSVSCPTCQAVGRKTIEGLKKHME-NC-KQEMFTCHHCGKQLRSLAGMKYHVMANHNSL   89 (96)
T ss_dssp             TSCEECTTTCSCEESSHHHHHHHHH-HH-CCCCCCCSSSCCCCSSHHHHHHHHHHHTCCC
T ss_pred             CCCcCCCCCCCCcccCHHHHHHHHH-HH-CCCCeECCCCCCeeCCHHHHHHHhHHhcCCC
Confidence            4789999999999 99999999998 89 99999999999999999999999 8889876

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.73  E-value=1.5e-18  Score=75.78  Aligned_cols=55  Identities=31%  Similarity=0.681  Sum_probs=52.3

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +|.++++|.|..|++.|.....|..|++.|.++  +||.|..|++.|.....|.+|+
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~~H~   62 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE--KPYKCLECGKAFSQNSGLINHQ   62 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS--CCEECSSSCCEESSHHHHHHHH
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHhcCCC--CCeECCCCCcccCCHHHHHHHH
Confidence            688999999999999999999999999999999  9999999999999999998874

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=1.9e-17  Score=75.54  Aligned_cols=60  Identities=22%  Similarity=0.250  Sum_probs=56.2

Q ss_pred             cccCcCCccccCHHHHHhHHHhh-CCCCCc--------cccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273           4 YKCHACDVETKTRQALDNHILCV-HTETKS--------FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~-~~~~~~--------~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      +.|..|++.|.....|..|++ . |.++++        |.|..|++.|.....|..|++.|+++  +||.|.
T Consensus        26 ~~C~~C~k~f~~~~~L~~H~~-~~H~~~~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   94 (95)
T 2ej4_A           26 RPKKSCDRTFSTMHELVTHVT-MEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGE--KSGPSS   94 (95)
T ss_dssp             SSCCCCCCCCSSHHHHHHHHH-HTTTCCTTCSCCCCCCTTCSSTTCCCSSHHHHHHHHHHHHTC--CCCSSC
T ss_pred             CcccccccccCCHHHHHHHHH-HhccCCCCCCccceeccCCCCCCcccCCHHHHHHHHHhcCCC--CCCCCC
Confidence            569999999999999999998 7 888877        89999999999999999999999999  999986

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.72  E-value=1.3e-18  Score=72.80  Aligned_cols=52  Identities=23%  Similarity=0.472  Sum_probs=46.0

Q ss_pred             CCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          29 ETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        29 ~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      ++++|.|..|++.|.....|..|++.|+++  +||.|..|++.|...+.|..|+
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~   52 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGE--KPYKCEFCEYAAAQKTSLRYHL   52 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHHHHCC--CCEECSSSSCEESSHHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHHcCCC--CCcCCCCCcchhCCHHHHHHHH
Confidence            457899999999999999999999999999  9999999999999999998874

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.71  E-value=2.3e-17  Score=76.54  Aligned_cols=62  Identities=23%  Similarity=0.467  Sum_probs=58.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      ++||.|..|++.|.....|..|+. .|.++++|.|..|++.|.....|..|++.|.++  +||.+
T Consensus        43 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~--~~~~~  104 (106)
T 2ee8_A           43 ERPYTCDICHKAFRRQDHLRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT--SSPTA  104 (106)
T ss_dssp             SCCCBCSSSCCBCSCHHHHHHHGG-GSCCCCTTSCSSSCCCCSSHHHHHHHHHHTTSC--CCCCC
T ss_pred             CCCcCCCCccchhCCHHHHHHHHH-HhCCCCCeECCCcCCcccCHHHHHHHHHHhCCC--CCCcC
Confidence            468999999999999999999998 999999999999999999999999999999999  88764

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=2.4e-18  Score=74.72  Aligned_cols=55  Identities=18%  Similarity=0.328  Sum_probs=51.8

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      ++.++++|.|..|++.|.....|..|++.|.++  ++|.|..|++.|.....|..|+
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C~~~f~~~~~L~~H~   57 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERIHCTD--RPFKCNYCSFDTKQPSNLSKHM   57 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGGGCCS--CSEECSSSSCEESSHHHHHHHH
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCEeCCCCCCccCCHHHHHHHH
Confidence            577899999999999999999999999999999  9999999999999999998874

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.71  E-value=1.5e-17  Score=70.13  Aligned_cols=56  Identities=21%  Similarity=0.517  Sum_probs=51.2

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHH-HHhcCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHK-RKMHDE   58 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~-~~~~~~   58 (82)
                      +||.|..|++.|.....|..|++ .|.++++|.|..|++.|...+.|..|+ ..|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSCSEECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             CcCcCCCCccccCCHHHHHHHHH-HhCCCCCccCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            68999999999999999999998 899999999999999999999999997 567665

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.71  E-value=2.1e-18  Score=76.33  Aligned_cols=61  Identities=20%  Similarity=0.424  Sum_probs=50.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCC---CCccccccchhhhcCcHHHHHHHH-HhcCCCCCeee
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTE---TKSFACDQCVSYFKTNSALLQHKR-KMHDEFVNLFS   64 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~---~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~~   64 (82)
                      ++||.|..|++.|.....|..|++ .|.+   +++|.|..|++.|.....|..|++ .|.++  ++..
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~--~~~~   69 (78)
T 2d9h_A            5 SSGLQCEICGFTCRQKASLNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL--LLAP   69 (78)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHHHHTTTCCEECTTTCCEESSHHHHHHHHHHTSTTT--SSCC
T ss_pred             CcCeECCCCCCeeCCHHHHHHHHH-HhhccCCCcccCCCCCCchhCCHHHHHHHHHHhCCCC--CCCc
Confidence            578999999999999999999988 7875   788999999999999999999985 45555  5543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=2.5e-17  Score=70.65  Aligned_cols=54  Identities=20%  Similarity=0.532  Sum_probs=29.5

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhh-C-CCCCccccccchhhhcCcHHHHHHHHHhc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCV-H-TETKSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~-~-~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      +||.|..|++.|.....|..|+. . | .++++|.|+.|++.|...+.|..|++.++
T Consensus         9 k~~~C~~C~k~f~~~~~l~~H~~-~~H~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A            9 HTYRCKVCSRVYTHISNFCRHYV-TSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             TEEECTTTCCEESSHHHHHHHHH-HHSSSSCCCEECTTTCCEESCHHHHHHHHHHHT
T ss_pred             cceECCCCcchhCCHHHHHHHHH-HHcCCCCcCeECCCCCCccCCHHHHHHHHHHHc
Confidence            45555555555555555555554 3 4 34555555555555555555555555544

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.70  E-value=1.2e-18  Score=76.93  Aligned_cols=55  Identities=33%  Similarity=0.576  Sum_probs=28.1

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCC-CccccccchhhhcCcHHHHHHHHHhc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTET-KSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~-~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      +||.|..|++.|.....|..|+...|.++ ++|.|+.|++.|.....|..|++.++
T Consensus        14 k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H   69 (77)
T 2ct1_A           14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRKQH   69 (77)
T ss_dssp             CSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccCCHHHHHHHHHHhC
Confidence            45555555555555555555543234432 45555555555555555555555433

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.69  E-value=9.6e-18  Score=73.50  Aligned_cols=55  Identities=27%  Similarity=0.639  Sum_probs=51.8

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .+.++++|.|..|++.|.....|..|++.|.++  ++|.|..|++.|.....|.+|+
T Consensus        11 ~~~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~   65 (74)
T 2lce_A           11 MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGE--KPYRCNICGAQFNRPANLKTHT   65 (74)
T ss_dssp             CCCCCCSBCCTTSSCCBSCHHHHHHHHHHHCCC--CSEECTTTCCEESCHHHHHHHH
T ss_pred             ccCCCCCeECCCCCceeCCHHHHHHHHHHcCCC--CCEECCCCCchhCCHHHHHHHH
Confidence            567889999999999999999999999999999  9999999999999999998874

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=99.69  E-value=1.6e-18  Score=74.43  Aligned_cols=55  Identities=16%  Similarity=0.485  Sum_probs=50.6

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHH-h-cCCCCCeeecCcccccccCcccccccC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRK-M-HDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~-~-~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +|.++++|.|+.|++.|.....|..|++. | .++  +||.|+.|++.|...+.|..|+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~--~~~~C~~C~k~f~~~~~L~~H~   60 (66)
T 2drp_A            4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNV--KVYPCPFCFKEFTRKDNMTAHV   60 (66)
T ss_dssp             EEEETTEEECTTTCCEESSHHHHHHHHHHHSSSSC--CCEECTTTCCEESCHHHHHHHH
T ss_pred             ccCCCcceECCCCcchhCCHHHHHHHHHHHcCCCC--cCeECCCCCCccCCHHHHHHHH
Confidence            67889999999999999999999999998 6 477  9999999999999999998874

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.69  E-value=5.5e-18  Score=77.94  Aligned_cols=62  Identities=24%  Similarity=0.442  Sum_probs=57.3

Q ss_pred             CCCcccCcCCcccc-CHHHHHhHHHhhCCC-CCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273           1 MTRYKCHACDVETK-TRQALDNHILCVHTE-TKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus         1 ~k~~~c~~c~~~~~-~~~~l~~h~~~~~~~-~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      ++||.|..|++.|. ....|..|++ +|.+ +++|.|..|++.|.....|..|++.|+++  +|...
T Consensus        22 ~~~~~C~~C~k~f~~~~~~L~~H~~-~h~~~~~~~~C~~C~k~F~~~~~L~~H~~~h~~~--kp~~~   85 (98)
T 2gqj_A           22 RGEAVCPTCNVVTRKTLVGLKKHME-VCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSA--KPSDA   85 (98)
T ss_dssp             TSCCCCTTTCCCCSSCSHHHHHHHH-HHHHHHHHHSCSSSCCCCSCHHHHHHHHHHHSCS--CSSCC
T ss_pred             CCCcCCCCCCCChhhhHHHHHHHHH-HHcCCCCCEECCCCCCccCCHHHHHHHHHHHcCC--CCCCC
Confidence            47899999999999 9999999998 8888 89999999999999999999999999998  77544

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.69  E-value=1.9e-19  Score=86.26  Aligned_cols=73  Identities=22%  Similarity=0.332  Sum_probs=59.4

Q ss_pred             cccCcCCccc------cCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccc
Q psy6273           4 YKCHACDVET------KTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQG   77 (82)
Q Consensus         4 ~~c~~c~~~~------~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~   77 (82)
                      +.|..|.+.|      .....|..|+  .|.++++|.|..|++.|.....|..|++.|  +  +||.|..|++.|...+.
T Consensus        42 ~~c~~~~~~~~~~~~~~~~~~l~~h~--~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H--~--~~~~C~~C~k~f~~~~~  115 (129)
T 2wbt_A           42 LIRAIVKTLIHNPQLLDESSYLYRLL--ASKAISQFVCPLCLMPFSSSVSLKQHIRYT--E--HTKVCPVCKKEFTSTDS  115 (129)
T ss_dssp             HHHHHHHHHHHCGGGTTTHHHHHHHH--HHHHHCSEECTTTCCEESSHHHHHHHHHHT--C--CCCBCTTTCCBCSSHHH
T ss_pred             ccchhhhcccCCCcccCCHHHHHHHH--HhCCCCCeECCCCCcccCCHhHHHHHHHHC--C--CCCCCCCCCcccCCHHH
Confidence            3455554444      4667777776  477889999999999999999999999998  6  89999999999999999


Q ss_pred             ccccC
Q psy6273          78 YKIHH   82 (82)
Q Consensus        78 l~~H~   82 (82)
                      |.+|+
T Consensus       116 l~~H~  120 (129)
T 2wbt_A          116 ALDHV  120 (129)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            98874

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.67  E-value=7.2e-18  Score=73.69  Aligned_cols=62  Identities=23%  Similarity=0.486  Sum_probs=52.4

Q ss_pred             HHhHHHhhCCCCCccccc--cchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          19 LDNHILCVHTETKSFACD--QCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        19 l~~h~~~~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +..+...++.++++|.|+  .|++.|.....|..|++.|.++  ++|.|..|++.|...+.|.+|+
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~   69 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQ--KPFQCRICMRNFSRSDHLTTHI   69 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCC--CCEECTTTCCEESCHHHHHHHH
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCC--CCeECCCCCchhCCHHHHHHHH
Confidence            444444477888999997  5999999999999999999998  9999999999999999998774

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.9e-17  Score=69.82  Aligned_cols=49  Identities=29%  Similarity=0.627  Sum_probs=46.6

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      ++|.|..|++.|.....|..|++.|+++  +||.|..|++.|...+.|..|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H   49 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE--KPYPCGLCNRAFTRRDLLIRH   49 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS--CSEECTTTCCEESSHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHHhCCC--CCccCCCCCCccCCHHHHHHH
Confidence            4789999999999999999999999999  999999999999999999887

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=99.66  E-value=2.6e-17  Score=68.73  Aligned_cols=49  Identities=24%  Similarity=0.530  Sum_probs=46.3

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      ||.|..|++.|.....|..|++.|.++  +||.|..|++.|...+.|..|+
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~l~~H~   49 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRTHTDV--RPYHCTYCNFSFKTKGNLTKHM   49 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHHTSSC--CCEECSSSSCEESSHHHHHHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHhcCCC--CCccCCCCCchhcCHHHHHHHH
Confidence            588999999999999999999999999  9999999999999999998874

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.65  E-value=3.7e-17  Score=72.12  Aligned_cols=55  Identities=29%  Similarity=0.629  Sum_probs=51.2

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .+.++++|.|..|++.|.....|..|++.|.++  +||.|..|++.|.....|.+|+
T Consensus        12 ~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~C~~~f~~~~~L~~H~   66 (77)
T 2cot_A           12 QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE--KPYKCDECGKAFIQRSHLIGHH   66 (77)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS--CSEECSSSCCEESSHHHHHHHG
T ss_pred             cCCCCCCEECCCCCcccCCHHHHHHHHHHcCCC--cCeeCCCCCCccCCHHHHHHHH
Confidence            456788999999999999999999999999999  9999999999999999998875

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.65  E-value=8.7e-17  Score=72.59  Aligned_cols=57  Identities=26%  Similarity=0.493  Sum_probs=53.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++||.|..|++.|.....|..|+. .|.++++|.|..|++.|...+.|..|++.|+++
T Consensus        32 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~   88 (90)
T 1a1h_A           32 QKPFQCRICMRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQ   88 (90)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHCCCCEECTTTCCEESSHHHHHHHHGGGGC-
T ss_pred             CCCccCCCCCcccCCHHHHHHHHH-HcCCCCCccCCCCCchhCCHHHHHHHHHHhccc
Confidence            468999999999999999999998 999999999999999999999999999999987

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=9.2e-17  Score=70.95  Aligned_cols=55  Identities=22%  Similarity=0.489  Sum_probs=51.0

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcC---CCCCeeecCcccccccCcccccccC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHD---EFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~---~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +|.++++|.|..|++.|.....|..|++.|.+   +  ++|.|..|++.|.....|.+|+
T Consensus         1 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~--~~~~C~~C~k~f~~~~~L~~H~   58 (78)
T 2d9h_A            1 GSSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAA--LRFPCEFCGKRFEKPDSVAAHR   58 (78)
T ss_dssp             CCCSCCCEECSSSCCEESSHHHHHHHHHHHHHHTTT--CCEECTTTCCEESSHHHHHHHH
T ss_pred             CCCCCcCeECCCCCCeeCCHHHHHHHHHHhhccCCC--cccCCCCCCchhCCHHHHHHHH
Confidence            37889999999999999999999999999986   6  8999999999999999998874

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.1e-16  Score=68.77  Aligned_cols=55  Identities=18%  Similarity=0.246  Sum_probs=42.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc-cchhhhcCcHHHHHHHHHhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD-QCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~-~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++||.|..|++.|. ...|..|++ + .++++|.|. .|++.|...+.|..|++.|...
T Consensus         8 ~~~~~C~~C~k~f~-~~~L~~H~~-~-~~~~p~~C~~~C~k~f~~~~~L~~H~~~hc~~   63 (66)
T 2eod_A            8 KRTQPCTYCTKEFV-FDTIQSHQY-Q-CPRLPVACPNQCGVGTVAREDLPGHLKDSCNT   63 (66)
T ss_dssp             CCEEECSSSCCEEE-HHHHHHHHH-H-CSSSEEECTTCCSCCEEETTTHHHHHHTTSSS
T ss_pred             CCCeeccccCCccC-HHHHHHHHH-H-cCCcCccCCcccCcccccHHHHHHHHHhhccc
Confidence            36777888888888 778888877 6 777788888 7888888888888888777655

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.64  E-value=2.9e-16  Score=71.65  Aligned_cols=57  Identities=26%  Similarity=0.631  Sum_probs=54.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++||.|..|++.|.....|..|+. .|.++++|.|..|++.|.....|..|++.|+++
T Consensus        34 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~   90 (96)
T 2dmd_A           34 VKPYKCKTCDYAAADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGD   90 (96)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HSCCCCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCCEeCCCCCCccCCHHHHHHHHH-HhCCCCCccCCCCCCccCCHHHHHHHHHHhcCC
Confidence            468999999999999999999998 999999999999999999999999999999988

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.64  E-value=4.5e-16  Score=68.59  Aligned_cols=62  Identities=23%  Similarity=0.461  Sum_probs=54.0

Q ss_pred             HHhHHHhhCCCCCccccccchhhhcCcHHHHHHHH-HhcCCCCCeeecCcccccccCcccccccC
Q psy6273          19 LDNHILCVHTETKSFACDQCVSYFKTNSALLQHKR-KMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        19 l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +..|++ +|.++++|.|..|++.|.....|..|++ .|.++ .++|.|..|++.|.....|..|+
T Consensus         3 ~~~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~-~~~~~C~~C~~~f~~~~~L~~H~   65 (77)
T 2ct1_A            3 SGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTEN-VAKFHCPHCDTVIARKSDLGVHL   65 (77)
T ss_dssp             CCCCCC-CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSSS-CSSEECSSSSCEESSHHHHHHHH
T ss_pred             CCcccc-ccCCCCCeECCCcCchhCCHHHHHHHHHHhcCCC-CCccCCCCCCCccCCHHHHHHHH
Confidence            446777 8999999999999999999999999997 56552 27999999999999999998874

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.64  E-value=1.8e-16  Score=70.41  Aligned_cols=56  Identities=27%  Similarity=0.589  Sum_probs=52.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      ++||.|..|++.|.....|..|+. .|.++++|.|..|++.|...+.|..|++.|+|
T Consensus        27 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           27 TRPYPCQYCGKRFHQKSDMKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG   82 (82)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHHTCCCEECTTTSCEESSHHHHHHHHHHHC-
T ss_pred             CCCeeCCcCChhhCCHHHHHHHHH-HhcCCCCCcCCCcchhhCChHHHHHHHHhhCC
Confidence            468999999999999999999998 99999999999999999999999999999875

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.63  E-value=3.9e-17  Score=73.21  Aligned_cols=63  Identities=27%  Similarity=0.503  Sum_probs=55.4

Q ss_pred             HHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCC--CCeeecCcccccccCcccccccC
Q psy6273          19 LDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEF--VNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        19 l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~--~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +..|++ +|.++++|.|..|++.|.....|..|++.++++.  .++|.|..|++.|.....|..|+
T Consensus         3 ~~~H~~-~H~~~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~L~~H~   67 (86)
T 1x6h_A            3 SGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA   67 (86)
T ss_dssp             TTCCST-TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEESCHHHHHHHH
T ss_pred             cccccc-eecCCCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhCCHHHHHHHH
Confidence            567887 8999999999999999999999999998877642  26899999999999999998874

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.61  E-value=3.7e-16  Score=64.70  Aligned_cols=47  Identities=19%  Similarity=0.256  Sum_probs=42.9

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHH-HhcCCCCCeeecCcccccccC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKR-KMHDEFVNLFSCPLCGEVFRS   74 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~~C~~C~~~f~~   74 (82)
                      .+.++++|.|..|++.|.....|..|++ .|.++  +||.|..|++.|.+
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~--k~~~C~~C~k~F~~   53 (54)
T 2eps_A            6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSE--RPHKCQVWVSGPSS   53 (54)
T ss_dssp             CCCSSCCEECSSSCCEESSHHHHHHHHHHTSCCC--CCCCSSSSCCSSCC
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHHhcCCC--CCccCCCCCCCCCC
Confidence            5677899999999999999999999997 89998  99999999999975

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.61  E-value=3e-16  Score=72.62  Aligned_cols=53  Identities=11%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             CCCCCccccccchhhhcCcHHHHHHHH-Hh---cCCCCCeeecCcccccccCccccccc
Q psy6273          27 HTETKSFACDQCVSYFKTNSALLQHKR-KM---HDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        27 ~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~---~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      ..++++|.|..|++.|...+.|..|++ .|   .++  +||.|..|++.|...+.|..|
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~e--kpf~C~~Cgk~F~~~~~L~~H   69 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLN--SSYVCVECNFLTKRYDALSEH   69 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHHCSSCCCS--CCEEETTTTEEESSTHHHHTH
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCC--CCcCCCCCCcccCCHHHHHHH
Confidence            468899999999999999999999998 48   456  899999999999999999887

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.60  E-value=1.7e-16  Score=71.57  Aligned_cols=51  Identities=31%  Similarity=0.656  Sum_probs=48.0

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +++|.|..|++.|.....|..|++.|.++  +||.|..|++.|.....|..|+
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C~k~f~~~~~L~~H~   51 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRTHTGE--KPFACDICGRKFARSDERKRHR   51 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHCC--CCEECTTTCCEESSHHHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHHcCCC--CCccCCCCCCccCCHHHHHHHH
Confidence            46899999999999999999999999999  9999999999999999998874

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=99.60  E-value=3.6e-16  Score=68.21  Aligned_cols=55  Identities=33%  Similarity=0.646  Sum_probs=51.0

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhc
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ++||.|+  .|++.|.....|..|++ .|.++++|.|..|++.|...+.|..|++.|+
T Consensus        17 ~~~~~C~~~~C~k~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~Ht   73 (73)
T 1f2i_G           17 MRPYACPVESCDRRFSRSDELTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT   73 (73)
T ss_dssp             CCCEECSSTTBCCEESSHHHHHHHHH-HHHCCCCEECTTTCCEESCHHHHHHHHTTCC
T ss_pred             CCccCCcCCCCCCccCCHHHHHHHHH-hhCCCCCeECCCCCchhCCHHHHHHHHHhcC
Confidence            4789997  59999999999999998 9999999999999999999999999998764

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.60  E-value=7.2e-16  Score=71.68  Aligned_cols=61  Identities=18%  Similarity=0.370  Sum_probs=56.5

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHH-HhcCCCCCeeecC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKR-KMHDEFVNLFSCP   66 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~~C~   66 (82)
                      +||.|..|++.|.....|..|+.  |.++++|.|..|++.|.....|..|++ .|.++  ++|.+.
T Consensus        41 ~~~~C~~C~~~f~~~~~l~~H~~--H~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~--~~~~~~  102 (107)
T 1wjp_A           41 NAAVCPYCSLRFFSPELKQEHES--KCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQN--NMAPTS  102 (107)
T ss_dssp             HSBCCTTTCCCBSSHHHHHHHHH--HCSTGGGEEGGGTEECSSHHHHHHHHHHTSCCC--CCCCCC
T ss_pred             CCccCCCCCCccCCHHHHHHHHH--cCCCCCccCccccchhCCHHHHHHHHHHHcCCC--CCCCCC
Confidence            47999999999999999999984  889999999999999999999999997 88888  899875

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=99.59  E-value=1.6e-15  Score=72.55  Aligned_cols=55  Identities=22%  Similarity=0.463  Sum_probs=52.1

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++||.|..|++.|.....|..|++ +|  +++|.|..|++.|...+.|..|++.|++.
T Consensus        72 ~~~~~C~~C~k~f~~~~~l~~H~~-~H--~~~~~C~~C~k~f~~~~~l~~H~~~h~~~  126 (129)
T 2wbt_A           72 ISQFVCPLCLMPFSSSVSLKQHIR-YT--EHTKVCPVCKKEFTSTDSALDHVCKKHNI  126 (129)
T ss_dssp             HCSEECTTTCCEESSHHHHHHHHH-HT--CCCCBCTTTCCBCSSHHHHHHHHHHTTCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHH-HC--CCCCCCCCCCcccCCHHHHHHHHHHHCCc
Confidence            379999999999999999999998 88  88999999999999999999999999986

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.59  E-value=7.8e-17  Score=68.54  Aligned_cols=57  Identities=19%  Similarity=0.263  Sum_probs=48.8

Q ss_pred             HHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273          19 LDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        19 l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      |..|++ +|.++++|.|+.|++.|.....|.   +.|.++  +||.|..|++.|....++..+
T Consensus         2 L~~h~~-~H~~~k~~~C~~C~k~F~~~~~l~---~~H~~~--k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            2 IETDER-DSTNRASFKCPVCSSTFTDLEANQ---LFDPMT--GTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCCCSS-SCCSSSEEECSSSCCEEEHHHHHH---HEETTT--TEEBCSSSCCBCEECTTCSCC
T ss_pred             hhhHHH-HcCCCCCccCCCCCchhccHHHhH---hhcCCC--CCEECCCCCCccccCcccccc
Confidence            345676 899999999999999999888876   789998  999999999999988776543

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=4.2e-16  Score=66.90  Aligned_cols=51  Identities=18%  Similarity=0.369  Sum_probs=47.1

Q ss_pred             CCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC-cccccccCcccccccC
Q psy6273          28 TETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP-LCGEVFRSHQGYKIHH   82 (82)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~-~C~~~f~~~~~l~~H~   82 (82)
                      -++++|.|..|++.|. ...|..|++. +++  +||.|. .|++.|...+.|..|+
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~-~~~--~p~~C~~~C~k~f~~~~~L~~H~   57 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ-CPR--LPVACPNQCGVGTVAREDLPGHL   57 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH-CSS--SEEECTTCCSCCEEETTTHHHHH
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH-cCC--cCccCCcccCcccccHHHHHHHH
Confidence            4678999999999999 9999999999 888  999999 9999999999998874

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=6.1e-16  Score=61.96  Aligned_cols=45  Identities=22%  Similarity=0.280  Sum_probs=41.0

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eq4_A            2 SSGS-SGTGEKLYNCKECGKSFSRAPCLLKHERLHSGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CSSCCCCCCBTTTTBCCSCHHHHHHHHHHCCSS--SCCCCCCC
T ss_pred             CCcc-cCCCCCCeECCCCCCccCchHHHHHHHHhcCCC--CCCCCCCC
Confidence            3566 789999999999999999999999999999999  99999887

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.58  E-value=7e-16  Score=61.77  Aligned_cols=45  Identities=20%  Similarity=0.191  Sum_probs=41.2

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|++ +|.++++|.|+.|++.|...+.|..|++.|.++  +||.|..|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eov_A            2 SSGS-SGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGE--RHSGPSSG   46 (46)
T ss_dssp             CCCC-CCSSCCSCBCSSSCCBCSSHHHHHHHHHHHSCC--SSCCSCCC
T ss_pred             CCCC-CCCCCCCccCCccChhhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            3566 788999999999999999999999999999999  99999887

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.58  E-value=6.1e-16  Score=62.00  Aligned_cols=45  Identities=22%  Similarity=0.309  Sum_probs=41.1

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2emk_A            2 SSGS-SGTGEKPYECKECGKAFSQTTHLIQHQRVHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CCSSSCSCBCSSSCCBCSCHHHHHHHHHHHSSC--CCSSCCCC
T ss_pred             CCCC-ccCCCCceECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            3566 789999999999999999999999999999999  99999876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=6.5e-16  Score=61.90  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=41.1

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2emy_A            2 SSGS-SGTGENPYECHECGKAFSRKYQLISHQRTHAGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CCCSSCCEECSSSCCEESSHHHHHHHHHHHTTS--CCSCSSCC
T ss_pred             CCCC-CCCCCcCcCCCCCCcccCcHHHHHHHHHHcCCC--CCCCCCCC
Confidence            3566 789999999999999999999999999999999  99999876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.57  E-value=9.3e-16  Score=61.46  Aligned_cols=44  Identities=25%  Similarity=0.207  Sum_probs=40.8

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ely_A            3 SGS-SGTGEKPFKCVECGKGFSRRSALNVHHKLHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCC-CCCCCCSBCCSSSCCCBSSTTHHHHHHHHHSCC--SSCSCCCC
T ss_pred             CCC-CCCCCCCcccCccCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            555 789999999999999999999999999999999  99999887

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=6e-16  Score=62.02  Aligned_cols=45  Identities=16%  Similarity=0.304  Sum_probs=41.3

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2eoo_A            2 SSGS-SGSGERPYGCNECGKNFGRHSHLIEHLKRHFRE--KSSGPSSG   46 (46)
T ss_dssp             CCCC-CCSCCCCEECSSSCCEESSHHHHHHHHHHHHST--TSSCCSCC
T ss_pred             CCCC-CCCCCCCEEccccCcccCCHHHHHHHHHHHcCC--CCCCCCCC
Confidence            3566 889999999999999999999999999999999  99999877

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=6.4e-16  Score=61.91  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=41.4

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2emp_A            2 SSGS-SGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCS-CSSCCCSEECSSSCCEESCHHHHHHHHHHHHCC--SCCSCCCC
T ss_pred             Cccc-ccCCCcCeECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            3566 889999999999999999999999999999999  99999877

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=8.3e-16  Score=61.04  Aligned_cols=41  Identities=24%  Similarity=0.357  Sum_probs=38.4

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   44 (44)
T 2emx_A            4 GSSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE--KPSGPSSG   44 (44)
T ss_dssp             CCSSCCCEECSSSSCEESSHHHHHHHHHHHTSS--CSCSCCCC
T ss_pred             CcCCCcCccCCCCCcccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            788999999999999999999999999999999  99999876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=6.1e-16  Score=61.97  Aligned_cols=45  Identities=20%  Similarity=0.259  Sum_probs=41.1

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2emm_A            2 SSGS-SGTGERPHKCNECGKSFIQSAHLIQHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCS-CSSCCCSEECSSSCCEESSHHHHHHHHHHHSCC--CTTSSSCC
T ss_pred             CCcC-CcCCCCCeeCCCCChhhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            3566 789999999999999999999999999999999  99999887

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.57  E-value=5.4e-16  Score=62.15  Aligned_cols=45  Identities=18%  Similarity=0.199  Sum_probs=40.9

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eml_A            2 SSGS-SGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGK--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CCSSCCSEECSSSCCEESSHHHHHHHHGGGSSC--CCSCSSCC
T ss_pred             CccC-CcCCCCCeeCCCcCCccCCHHHHHHHHHHhcCC--CCCCCCCC
Confidence            3566 789999999999999999999999999999999  99999887

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8.3e-16  Score=61.58  Aligned_cols=45  Identities=16%  Similarity=0.211  Sum_probs=41.1

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2ytd_A            2 SSGS-SGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGY--RPSGPSSG   46 (46)
T ss_dssp             CCCC-CSCCCCSEECSSSCCEESSHHHHHHHHHHHTCC--CSSCSSCC
T ss_pred             CCcc-ccCCCcCeECCCCCCeeCChHHHHHHHHHcCCC--CCCCCCCC
Confidence            3556 789999999999999999999999999999999  99999877

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.6e-16  Score=61.89  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=41.3

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2emh_A            2 SSGS-SGTGERPYICTVCGKAFTDRSNLIKHQKIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-SCSCCCSEECTTTCCEESSHHHHHHHHHHHHCS--SCSSSCCC
T ss_pred             CCCC-CCCCCCCcCCCCCCchhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            3566 889999999999999999999999999999999  99999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.4e-16  Score=61.89  Aligned_cols=45  Identities=22%  Similarity=0.268  Sum_probs=40.8

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eoe_A            2 SSGS-SGTGEKPYKCNECGKVFTQNSHLANHQRIHTGV--KPSGPSSG   46 (46)
T ss_dssp             CCSS-CCCCCCSSEETTTTEECSSHHHHHHHHGGGSCC--CSCSSCCC
T ss_pred             CCCC-CCCCCCCeECCCcChhhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            3556 788999999999999999999999999999999  99999877

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.56  E-value=5.9e-16  Score=62.02  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|+.|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2em0_A            2 SSGS-SGMGEKTWKCRECDMCFSQASSLRLHQNVHVGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CSCCCCCCCCSSSCCCCSSHHHHHHHGGGGSSS--SCSCSSCC
T ss_pred             CCcC-ccCCCcCeECCCCCcccCCHHHHHHHHHHcCCC--CCcCCCCC
Confidence            3566 789999999999999999999999999999999  99999876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8.4e-16  Score=61.56  Aligned_cols=45  Identities=20%  Similarity=0.205  Sum_probs=40.8

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2ep2_A            2 SSGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSSS-CSSCCCSEECSSSCCEESSHHHHHHHHHTTSSC--CSCCSCCC
T ss_pred             CCCC-CCCCCcCcCCCCCCcccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            3555 788999999999999999999999999999999  99999876

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8.4e-16  Score=61.57  Aligned_cols=45  Identities=24%  Similarity=0.190  Sum_probs=40.5

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2eoq_A            2 SSGS-SGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CSSSSCSCCCSSSCCCCSSHHHHHHHHHHTTCC--CSSSCCCC
T ss_pred             CCCC-CCCCCCCcCCCcCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            3555 788999999999999999999999999999999  99999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=9.7e-16  Score=61.36  Aligned_cols=45  Identities=22%  Similarity=0.227  Sum_probs=41.1

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2epw_A            2 SSGS-SGTGEKPCKCTECGKAFCWKSQLIMHQRTHVDD--KHSGPSSG   46 (46)
T ss_dssp             CCCC-CCCCCCSEECSSSCCEESSSHHHHHHHHHCCSC--CCSCCCCC
T ss_pred             cCcc-cCCCCCCeeCCCCCCccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            3556 789999999999999999999999999999999  99999877

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=8.9e-16  Score=61.48  Aligned_cols=45  Identities=22%  Similarity=0.264  Sum_probs=41.0

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~c   46 (46)
T 2ytk_A            2 SSGS-SGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CSSSSCSEECSSSCCEESSHHHHHHHHHHHSSS--SCSSCCCC
T ss_pred             CCcc-cCCCCCCEeCCcCCCccCCHHHHHHHHHHHCCC--CCCCCCCC
Confidence            3556 789999999999999999999999999999999  99999876

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=6.7e-16  Score=61.85  Aligned_cols=45  Identities=22%  Similarity=0.294  Sum_probs=41.4

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2yu8_A            2 SSGS-SGTGEKPYKCNECGKVFTQNSHLARHRRVHTGG--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CCCCCSSEECSSSCCEESSSHHHHHHTHHHHSC--CCSCSCCC
T ss_pred             CcCc-CCCCCCCeECCcCCchhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            3556 789999999999999999999999999999999  99999887

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=1e-15  Score=61.31  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=40.8

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2ytj_A            2 SSGS-SGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQ--KPSGPSSG   46 (46)
T ss_dssp             CSSC-TTSSCCSEECSSSCCEESSHHHHHHHHHHTSCC--CCSSCSCC
T ss_pred             Cccc-CCCCCcCeECCCCChhhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4566 889999999999999999999999999999999  99999876

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.56  E-value=5.8e-16  Score=62.04  Aligned_cols=45  Identities=22%  Similarity=0.283  Sum_probs=40.4

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ytn_A            2 SSGS-SGTGKKPYKCNECGKVFTQNSHLARHRGIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CCSCCSSCBCTTTCCBCSSHHHHHHHGGGTSCC--CCCSCCCC
T ss_pred             CCCc-CCCCCcCeECCCCCCeeCCHHHHHHHhhhcCCC--CCCCCCCC
Confidence            3555 788999999999999999999999999999999  99999876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=8.9e-16  Score=61.46  Aligned_cols=45  Identities=20%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|+.|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2eme_A            2 SSGS-SGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-TTCCCCSEECSSSCCEESSHHHHHHHHGGGCCC--SCCSSCCC
T ss_pred             CCCC-CCCCCCCeECCCCChhhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            3566 789999999999999999999999999999999  99999887

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1.5e-15  Score=60.89  Aligned_cols=44  Identities=23%  Similarity=0.221  Sum_probs=40.4

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 h~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2ytm_A            3 SGS-SGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQ--RPSGPSSG   46 (46)
T ss_dssp             SCC-CCSSCCSSSBTTTTBCCSSHHHHHHHHHHHHSC--CCCCCCCC
T ss_pred             CCc-CCCCCCCcCCCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            445 788999999999999999999999999999999  99999877

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=9.8e-16  Score=61.37  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=40.7

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 h~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2en6_A            3 SGS-SGSGEKPYGCNECGKTFSQKSILSAHQRTHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSC-CCCSSCCEEETTTTEEESSHHHHHHHHHHHSSC--CCSSSCCC
T ss_pred             CCC-ccCCCcCeECCCCCcccCchHHHHHHHHHcCCC--CCCCCCCC
Confidence            555 789999999999999999999999999999999  99999887

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.55  E-value=7.8e-16  Score=61.66  Aligned_cols=45  Identities=24%  Similarity=0.301  Sum_probs=40.8

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2ema_A            2 SSGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSCS-SCTTSCCEECSSSCCEESSHHHHHHHHTGGGCC--CCCSSSCC
T ss_pred             CCcc-CCCCCcCcCCCCCcchhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            3556 789999999999999999999999999999999  99999876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=7.9e-16  Score=61.62  Aligned_cols=45  Identities=27%  Similarity=0.273  Sum_probs=40.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2eop_A            2 SSGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGE--NPSGPSSG   46 (46)
T ss_dssp             CCCC-SCCCCCSCBCTTTCCBCSSHHHHHHHHTTTTTS--CCSCCCCC
T ss_pred             CCcc-ccCCCCCeeCCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            3566 788999999999999999999999999999999  99999876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=7.7e-16  Score=61.66  Aligned_cols=45  Identities=22%  Similarity=0.285  Sum_probs=40.7

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2ytr_A            2 SSGS-SGTGEKPYKCNECGKAFSQTSKLARHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSSC-CCSSCCTTCCTTTCCCCSSHHHHHHHHTTTTTC--SCCCSCCC
T ss_pred             CCCc-CCCCCcCcCCCCCCCccCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            3566 788999999999999999999999999999999  99999887

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.5e-15  Score=60.78  Aligned_cols=44  Identities=16%  Similarity=0.156  Sum_probs=40.5

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2yso_A            3 SGS-SGSREKSHQCRECGEIFFQYVSLIEHQVLHMGQ--KNSGPSSG   46 (46)
T ss_dssp             CSC-CSSCCCCEECTTTCCEESSHHHHHHHHHHHSCC--SCCCTTCC
T ss_pred             ccc-ccCCCCCEEccccChhhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            455 788999999999999999999999999999999  99999877

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1e-15  Score=61.33  Aligned_cols=44  Identities=16%  Similarity=0.172  Sum_probs=40.2

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 h~~-~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2elz_A            3 SGS-SGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGE--KTSGPSSG   46 (46)
T ss_dssp             CCS-CCCCCSSCBCSSSCCBCSSHHHHHHHGGGGGSC--CCCCSCCC
T ss_pred             CCC-CCCCCCCeeCcccCchhCCHHHHHHHHHhcCCC--CCCCCCCC
Confidence            455 788999999999999999999999999999999  99999887

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=6.4e-16  Score=61.94  Aligned_cols=45  Identities=27%  Similarity=0.237  Sum_probs=40.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2em5_A            2 SSGS-SGSSTKSHQCHECGRGFTLKSHLNQHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CCCCSCSEECSSSCCEESSHHHHHHHHTTTSCS--CCSSCCCC
T ss_pred             CCcC-CCCCCCCeECCcCCCccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            3556 788999999999999999999999999999999  99999877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=7e-16  Score=61.80  Aligned_cols=44  Identities=25%  Similarity=0.315  Sum_probs=40.2

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ene_A            3 SGS-SGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCS-SCCCSSSEECSSSCCEESSHHHHHHHHTTTCCC--CCCSCCCC
T ss_pred             ccc-CCCCCCCeECCCCCchhCChHHHHHHHhhcCCC--CCCCCCCC
Confidence            555 788999999999999999999999999999999  99999877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.55  E-value=6.3e-16  Score=61.91  Aligned_cols=45  Identities=22%  Similarity=0.292  Sum_probs=40.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2el4_A            2 SSGS-SGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGV--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CSCCCCSEECSSSSCEESSHHHHHHHGGGSSSC--CCSCCTTC
T ss_pred             cccc-CCCCCCceECCCCCchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            3566 788999999999999999999999999999999  99999876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=9.3e-16  Score=61.43  Aligned_cols=45  Identities=24%  Similarity=0.313  Sum_probs=41.3

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2en1_A            2 SSGS-SGSGEKPFKCEECGKRFTQNSQLHSHQRVHTGE--KPSGPSSG   46 (46)
T ss_dssp             CSTT-CCCCCCSEEETTTTEEESSHHHHHHHGGGGSCC--CCSCCCCC
T ss_pred             Cccc-CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            4666 899999999999999999999999999999999  99999887

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=1.6e-15  Score=60.77  Aligned_cols=44  Identities=25%  Similarity=0.286  Sum_probs=40.0

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2enc_A            3 SGS-SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGE--KPSGPSSG   46 (46)
T ss_dssp             CSS-CCCCCCSEECSSSCCEESSHHHHHHHHHHSCCS--SCCSSCCC
T ss_pred             CCC-CCCCCCCcCCCCCCCcCCChHHHHHHHHHhCCC--CCCCCCCC
Confidence            455 788999999999999999999999999999999  99999877

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1.1e-15  Score=61.17  Aligned_cols=44  Identities=25%  Similarity=0.235  Sum_probs=39.7

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2epz_A            3 SGS-SGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCS-SCCCCCSBCCTTTCCCBSSHHHHHHHHTTTTTC--CCCSSCCC
T ss_pred             CCC-CcCCCCCeECCCCCceeCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            455 788999999999999999999999999999998  99999876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.55  E-value=1.2e-15  Score=61.16  Aligned_cols=44  Identities=20%  Similarity=0.264  Sum_probs=39.8

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ytq_A            3 SGS-SGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGE--KPSGPSSG   46 (46)
T ss_dssp             CSS-CSSCCCSCBCSSSCCBCSCHHHHHHHHTTTCCS--CSSCCCCC
T ss_pred             CCc-CcCCCCCcCCCccChhhCChHHHHHHHHHhCCC--CCCCCCCC
Confidence            455 788999999999999999999999999999998  99999876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=7.7e-16  Score=61.65  Aligned_cols=45  Identities=27%  Similarity=0.214  Sum_probs=40.5

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2en8_A            2 SSGS-SGSGEKSHTCDECGKNFCYISALRIHQRVHMGE--KCSGPSSG   46 (46)
T ss_dssp             CCCC-CCCCCSSEECTTTCCEESSHHHHHHHHTTTCCS--CSSCCSCC
T ss_pred             Cccc-cCCCCCCeECCCcCcccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            3556 788999999999999999999999999999999  99999876

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.54  E-value=9.1e-15  Score=66.50  Aligned_cols=57  Identities=21%  Similarity=0.476  Sum_probs=52.0

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC--CccccccchhhhcCcHHHHHHHH-HhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET--KSFACDQCVSYFKTNSALLQHKR-KMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~--~~~~c~~c~~~~~~~~~l~~h~~-~~~~~   58 (82)
                      ++||.|..|++.|.....|..|+. .|.++  ++|.|..|++.|.....|..|++ .|.++
T Consensus        33 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~~~C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           33 EKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             SCSEECSSSCCEESCHHHHHHHHH-HHCCCCCSSBCCSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHH-HhcCCCCCceECCCccchhCCHHHHHHHHHHhcCCC
Confidence            478999999999999999999998 88886  89999999999999999999996 67665

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.54  E-value=1.1e-14  Score=66.74  Aligned_cols=56  Identities=29%  Similarity=0.562  Sum_probs=52.1

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcC
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      +++|.|.  .|++.|.....|..|+. .|.++++|.|..|++.|.....|..|++.|++
T Consensus        43 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           43 EKPYKCTWEGCDWRFARSDELTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             CCCEECCSSSCCCEESSHHHHHHHHH-HHTSCCSCBCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             CCCeeCCCCCCCCccCCHHHHHHHHH-HhCCCCCeECCCCcCccCCHHHHHHHHHHhCC
Confidence            4689996  69999999999999998 99999999999999999999999999999864

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=8.3e-16  Score=61.58  Aligned_cols=44  Identities=23%  Similarity=0.267  Sum_probs=39.9

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2eq0_A            3 SGS-SGTGEKPYKCHECGKVFRRNSHLARHQLIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCC-CTTCCCCEECTTTCCEESSHHHHHHHHTTTCCC--CCSCCSCC
T ss_pred             CCc-CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            555 788999999999999999999999999999999  99999876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.54  E-value=8.9e-16  Score=61.47  Aligned_cols=45  Identities=24%  Similarity=0.312  Sum_probs=40.7

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2em9_A            2 SSGS-SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGE--KPSGPSSG   46 (46)
T ss_dssp             CSCC-SCCCCCSEECSSSCCEESSHHHHHHHGGGGTSC--CCCSTTCC
T ss_pred             CCCC-CCCCCcCeECCccccccCChHHHHHHHHHhCCC--CCCCCCCC
Confidence            3556 788999999999999999999999999999999  99999877

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-15  Score=60.98  Aligned_cols=44  Identities=20%  Similarity=0.240  Sum_probs=39.9

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|..|
T Consensus         3 h~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2el6_A            3 SGS-SGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTRE--KPSGPSSG   46 (46)
T ss_dssp             SCC-SSCCCCSEECSSSSCEESSHHHHHHHHGGGCCS--SCCSCCCC
T ss_pred             CCC-CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            445 788999999999999999999999999999999  99999877

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=1.8e-15  Score=60.57  Aligned_cols=44  Identities=20%  Similarity=0.198  Sum_probs=40.3

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|..|
T Consensus         3 h~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2em8_A            3 SGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGE--KLSGPSSG   46 (46)
T ss_dssp             CCC-CCCSCCSEECSSSCCEESSHHHHHHHHHHHHCC--CCCCSCCC
T ss_pred             CCC-CCCCCCCeECcccCchhCCHHHHHHHHHHHcCC--CCCCCCCC
Confidence            445 788999999999999999999999999999999  99999887

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.54  E-value=9.5e-16  Score=61.44  Aligned_cols=44  Identities=23%  Similarity=0.241  Sum_probs=40.0

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~c   46 (46)
T 2emf_A            3 SGS-SGTGGKHFECTECGKAFTRKSTLSMHQKIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCS-SSSSSCCEECSSSCCEESCHHHHHHHGGGTSCS--SCSCCCCC
T ss_pred             ccc-ccCCCCCeECCCCCchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            555 788999999999999999999999999999998  99999876

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.54  E-value=7.3e-15  Score=68.50  Aligned_cols=56  Identities=23%  Similarity=0.541  Sum_probs=52.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      ++||.|..|++.|.....|..|+. .|.++++|.|..|++.|.....|..|++.+..
T Consensus        35 ~~~~~C~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~   90 (110)
T 2csh_A           35 LRPYGCGVCGKKFKMKHHLVGHMK-IHTGIKPYECNICAKRFMWRDSFHRHVTSCTK   90 (110)
T ss_dssp             CCSEECTTTSCEESSSHHHHHHHT-TTCCCCCEECSSSCCEESCHHHHHHHHHHHHH
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-HcCCCCCeeCCCCcchhcCHHHHHHHHHHccc
Confidence            478999999999999999999998 99999999999999999999999999998874

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.54  E-value=4.7e-15  Score=64.47  Aligned_cols=54  Identities=26%  Similarity=0.507  Sum_probs=45.2

Q ss_pred             CCCCCcccccc--chhhhcCcHHHHHHHHHhcCCCCCeeecCc--ccccccCcccccccC
Q psy6273          27 HTETKSFACDQ--CVSYFKTNSALLQHKRKMHDEFVNLFSCPL--CGEVFRSHQGYKIHH   82 (82)
Q Consensus        27 ~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~   82 (82)
                      ....++|.|..  |++.|.....|..|++.|+++  +||.|..  |++.|.....|.+|+
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~~~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGE--KPFSCSWKGCERRFARSDELSRHR   69 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSS--CSEECCCTTCCCEESSHHHHHHHT
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCC--CCccCCCCCCCcccCCHHHHHhHh
Confidence            44567888877  999999999999999999888  8999964  999999888888775

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=1.2e-15  Score=61.16  Aligned_cols=44  Identities=18%  Similarity=0.181  Sum_probs=39.8

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2em7_A            3 SGS-SGTGEKPYKCEECGKGFICRRDLYTHHMVHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCC-SSSCCCSEECSSSCCEESCHHHHHHHGGGGTTC--CCSSTTCC
T ss_pred             CCC-CCCCCcCccCCCccchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            455 788999999999999999999999999999999  99999877

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.53  E-value=5.8e-15  Score=58.82  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=39.0

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccc
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCG   69 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~   69 (82)
                      .|.++++|.|..|++.|...+.|..|++.|+++  ++|.|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~--~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGS--VGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHHHSCC--CCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHHccCC--CCCCCcCCC
Confidence            578899999999999999999999999999999  999999986

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.2e-15  Score=61.09  Aligned_cols=44  Identities=16%  Similarity=0.185  Sum_probs=39.7

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|+.|++.|...+.|..|++.|+++  +||.|..|
T Consensus         3 H~~-~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~C   46 (46)
T 2ysp_A            3 SGS-SGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGE--RPSGPSSG   46 (46)
T ss_dssp             CCC-CCSSCCSEEETTTTEEESCHHHHHHHHTTSCSC--CSSCCSCC
T ss_pred             CCc-CCCCCCCeECCCCCCccCCHHHHHHHHHhhCCC--CCCCCCCC
Confidence            455 788999999999999999999999999999998  99999877

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=6.5e-16  Score=61.90  Aligned_cols=45  Identities=22%  Similarity=0.260  Sum_probs=40.8

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ytg_A            2 SSGS-SGTGEKPFKCGECGKSYNQRVHLTQHQRVHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCC-CCSSCCSEECTTTCCEESSSHHHHTTGGGGSSC--CSSCSCCC
T ss_pred             CCCC-CCCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            3556 788999999999999999999999999999999  99999887

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.53  E-value=1.6e-15  Score=60.74  Aligned_cols=45  Identities=20%  Similarity=0.262  Sum_probs=40.2

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~~   46 (46)
T 2ep3_A            2 SSGS-SGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCCS-SSSCCCSEECSSSCCEESSHHHHHHHHTTTTTS--CCCCTTCC
T ss_pred             CCCC-CCCCCCCeECCCCCchhCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            3566 788999999999999999999999999999999  99999864

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.2e-15  Score=70.76  Aligned_cols=63  Identities=11%  Similarity=0.101  Sum_probs=54.5

Q ss_pred             HHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHH--hcCCCCCee-ecCcccccc--cCcccccccC
Q psy6273          17 QALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRK--MHDEFVNLF-SCPLCGEVF--RSHQGYKIHH   82 (82)
Q Consensus        17 ~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~--~~~~~~~~~-~C~~C~~~f--~~~~~l~~H~   82 (82)
                      ..|..|++ +|.++++|.|..|++.|.....|..|++.  +.++  +++ .|..|++.|  .....|..|+
T Consensus         5 ~~l~~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~--~~~~~C~~C~~~f~f~~~~~l~~H~   72 (115)
T 2dmi_A            5 SSGKLYGS-IFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRD--DNHETDNNNPKRWSKPRKRSLLEME   72 (115)
T ss_dssp             CCCCCCCC-CCCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBC--SCCCCCCCCCSCCSSCCCCCCCCCC
T ss_pred             hhhhhhee-eeCCCCCEECCccCchhcCHHHHHHHHHHhCcccc--CCCccCCCCCcccccccHHHHHHHh
Confidence            34677887 89999999999999999999999999998  6666  554 599999998  8888998885

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=99.52  E-value=6.8e-15  Score=63.96  Aligned_cols=54  Identities=26%  Similarity=0.490  Sum_probs=49.2

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHHHHh
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKM   55 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~   55 (82)
                      +++|.|..  |++.|.....|..|++ .|.++++|.|..  |++.|.....|..|++.|
T Consensus        15 ~~~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           15 IRSHICSHPGCGKTYFKSSHLKAHTR-THTGEKPFSCSWKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCEECSSTTTCCEESSHHHHHHHHH-HHSSSCSEECCCTTCCCEESSHHHHHHHTTTC
T ss_pred             cCceeCCCCCCccccCCHHHHHHHHH-hcCCCCCccCCCCCCCcccCCHHHHHhHhhcC
Confidence            36899988  9999999999999998 999999999964  999999999999998654

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.51  E-value=3.6e-15  Score=59.87  Aligned_cols=44  Identities=23%  Similarity=0.251  Sum_probs=40.4

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHH-HhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKR-KMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++ .|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~--k~~~C~~C   47 (47)
T 2epx_A            3 SGS-SGTGKKPYECIECGKAFIQNTSLIRHWRYYHTGE--KPSGPSSG   47 (47)
T ss_dssp             CCC-CCCCCCSBCCSSSCCCBSSHHHHHHHHTTTTTTS--CSSSCCCC
T ss_pred             ccc-ccCCCCCEECCccCchhCChHHHHHHhHhhcCCC--CCCCCCCC
Confidence            555 7889999999999999999999999999 99999  99999877

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=1.8e-17  Score=72.20  Aligned_cols=57  Identities=18%  Similarity=0.261  Sum_probs=27.0

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +||.|..|++.|.....|..        +++|.|..|++.|...+.|..|++.|+++  +||.|..|
T Consensus        17 ~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~--~~~~C~~C   73 (73)
T 2ctu_A           17 RSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNESGK--KTSGPSSG   73 (73)
T ss_dssp             SEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCCCC--CCSSCCCC
T ss_pred             CCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhcCC--CCCCCCCC
Confidence            34455555555544433322        33445555555555555555555555544  45555443

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.50  E-value=6.3e-15  Score=59.50  Aligned_cols=43  Identities=23%  Similarity=0.321  Sum_probs=37.2

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      .+.++++|.|..|++.|.....|..|++.|+++  +||.|..|++
T Consensus         6 ~~~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C~k   48 (48)
T 2epr_A            6 SGRTRKQVACEICGKIFRDVYHLNRHKLSHSGE--KPYSSGPSSG   48 (48)
T ss_dssp             CCCCCCSEEETTTTEEESSHHHHHHHGGGSCSC--CCCCSCCCCC
T ss_pred             CCCCCcCeeCCCCCcccCCHHHHHHHHHhcCCC--CCccCCCCCC
Confidence            466778899999999999999999999999888  8999998875

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.50  E-value=6.5e-15  Score=58.94  Aligned_cols=44  Identities=23%  Similarity=0.253  Sum_probs=39.8

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      |++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|..|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~~   46 (46)
T 2em2_A            3 SGS-SGSGEKPFKCKECGKAFRQNIHLASHLRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             CCC-SCCCCCSEECSSSCCEESSHHHHHHHHHHHCCC--CSSCSSCC
T ss_pred             CCC-CCCCCCCEECCcCCchhCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            555 788999999999999999999999999999999  99999864

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.49  E-value=1.6e-14  Score=64.98  Aligned_cols=55  Identities=24%  Similarity=0.525  Sum_probs=50.8

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhc
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ++||.|+  .|++.|.....|..|+. .|.++++|.|+.|++.|...+.|..|++.|.
T Consensus        33 ~~~~~C~~~~C~~~f~~~~~l~~H~~-~h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~   89 (89)
T 2wbs_A           33 EKPYHCDWDGCGWKFARSDELTRHYR-KHTGHRPFQCQKCDRAFSRSDHLALHMKRHF   89 (89)
T ss_dssp             SCCEECCSTTTCCEESSHHHHHHHHH-HHHCCCCEECSSSSCEESSHHHHHHHGGGGC
T ss_pred             CCCcCCCCCCCCCccCCHHHHHHHHH-HcCCCCCccCCCCCcccCCHHHHHHHHHhhC
Confidence            3689997  69999999999999998 9999999999999999999999999998773

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.48  E-value=5.7e-14  Score=57.98  Aligned_cols=44  Identities=27%  Similarity=0.434  Sum_probs=40.1

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKT   44 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~   44 (82)
                      ++||.|..|++.|.....|..|++.+|.++++|.|..|++.|.+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~~   53 (54)
T 2eps_A           10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPSS   53 (54)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCCC
Confidence            47999999999999999999998437999999999999999865

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.47  E-value=1.2e-14  Score=58.08  Aligned_cols=44  Identities=25%  Similarity=0.296  Sum_probs=39.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|..
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2emj_A            2 SSGS-SGTGEKPFECAECGKSFSISSQLATHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCC-CCCCCCSEECSSSSCEESSHHHHHHHHHHHTTS--CSSSSCC
T ss_pred             CCCC-CCCCCCCEECCCCCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            3566 789999999999999999999999999999999  9999963

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=1.6e-14  Score=57.72  Aligned_cols=43  Identities=26%  Similarity=0.345  Sum_probs=39.3

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2em4_A            3 SGS-SGTGQRPYECIECGKAFKTKSSLICHRRSHTGE--KPSGPSS   45 (46)
T ss_dssp             SCC-CCCCSSSEECSSSCCEESSHHHHHHHHHHHSSS--SCCCCCC
T ss_pred             Ccc-ccCCCcCcCCCCCCCccCCHHHHHHHHHhcCCC--CCCCCCC
Confidence            555 789999999999999999999999999999999  9999964

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.47  E-value=1.9e-14  Score=63.47  Aligned_cols=53  Identities=30%  Similarity=0.620  Sum_probs=48.3

Q ss_pred             CCCCcccccc--chhhhcCcHHHHHHHH-HhcCCCCCeeecCc--ccccccCcccccccC
Q psy6273          28 TETKSFACDQ--CVSYFKTNSALLQHKR-KMHDEFVNLFSCPL--CGEVFRSHQGYKIHH   82 (82)
Q Consensus        28 ~~~~~~~c~~--c~~~~~~~~~l~~h~~-~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~   82 (82)
                      +++++|.|..  |++.|.....|..|++ .|.++  ++|.|..  |++.|.....|..|+
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~--~~~~C~~~~C~k~f~~~~~L~~H~   60 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQ--KSFSCPEPACGKSFNFKKHLKEHM   60 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSC--CCEECSCTTTCCEESSHHHHHHHH
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCC--CCeECCCCCCcCccCCHHHHHHHH
Confidence            4677899986  9999999999999999 69998  9999999  999999999998874

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.5e-14  Score=57.84  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=39.7

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eow_A            2 SSGS-SGTGEKPYKCNECGKAFRARSSLAIHQATHSGE--KPSGPSS   45 (46)
T ss_dssp             CCCC-CSCCCCCEECTTSCCEESSHHHHHHHHHHHCCC--SCSCTTC
T ss_pred             CccC-CCCCCCCeeccccCChhcCHHHHHHHHHHcCCC--CCCCCCC
Confidence            3556 789999999999999999999999999999999  9999963

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.47  E-value=1.7e-14  Score=57.66  Aligned_cols=41  Identities=20%  Similarity=0.215  Sum_probs=38.5

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|.++++|.|..|++.|.....|..|++.|+++  +||.|..|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTRE--KPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTHHHHC--CCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHHcCCC--CCCCCCCC
Confidence            688899999999999999999999999999999  99999877

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.47  E-value=1.1e-14  Score=57.10  Aligned_cols=41  Identities=20%  Similarity=0.345  Sum_probs=36.5

Q ss_pred             HHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          23 ILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        23 ~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      ++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+
T Consensus         2 ~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   42 (42)
T 2el5_A            2 SS-GSSGENPYECSECGKAFNRKDQLISHQRTHAGE--SGPSSG   42 (42)
T ss_dssp             CS-SSSSCCSEECSSSCCEESSHHHHHHHHGGGCCC--CSCCCC
T ss_pred             CC-CCCCCCCccCCCcChhhCCHHHHHHHHHhcCCC--CCCCCC
Confidence            44 788899999999999999999999999999998  899884

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.6e-14  Score=57.70  Aligned_cols=44  Identities=20%  Similarity=0.292  Sum_probs=39.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~~   45 (46)
T 2em3_A            2 SSGS-SGTGEKPYECKVCSKAFTQKAHLAQHQKTHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCC-CCSSCCSEECSSSCCEESSHHHHHHHHHHHCCC--CCCCSCC
T ss_pred             CCCC-CCCCCcCeECCCCCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            3556 788999999999999999999999999999999  9999964

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.7e-14  Score=57.71  Aligned_cols=43  Identities=23%  Similarity=0.253  Sum_probs=38.5

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eoh_A            3 SGS-SGSGKKPYECKECRKTFIQIGHLNQHKRVHTGE--RSSGPSS   45 (46)
T ss_dssp             CCC-SCCCSCSCCCSSSCCCCSSHHHHHHHHHHCSSC--CSCSTTC
T ss_pred             CCC-CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            455 788999999999999999999999999999998  9999864

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=1.3e-14  Score=58.02  Aligned_cols=44  Identities=23%  Similarity=0.326  Sum_probs=39.0

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2enf_A            2 SSGS-SGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCC-CCCCCCSCBCSSSCCBCSSHHHHHHHHTTTTTS--SCCCCSC
T ss_pred             CCCc-CCCCCcCeECCCCCcccCCHHHHHHHHHhhCCC--CCCCCCC
Confidence            3555 788999999999999999999999999999999  9999864

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.46  E-value=2.7e-14  Score=57.04  Aligned_cols=41  Identities=27%  Similarity=0.360  Sum_probs=37.6

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|.++++|.|..|++.|.....|..|++.|+++  +||.|..|
T Consensus         6 ~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   46 (46)
T 2ep0_A            6 SGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGE--KPSGPSSG   46 (46)
T ss_dssp             SSTTCCSEECSSSCCEESSHHHHHHHHTTTSSS--CCCSCCCC
T ss_pred             CCCCCCCeeCcccCcccCChHHHHHHHHHhCCC--CCCCCCCC
Confidence            688899999999999999999999999999998  99999876

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=2.5e-14  Score=57.16  Aligned_cols=43  Identities=23%  Similarity=0.294  Sum_probs=38.9

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|+.
T Consensus         3 h~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2en9_A            3 SGS-SGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCS-SCCSSCCCBCTTTCCBCSSHHHHHHHHHHHTSS--CCCSCCC
T ss_pred             CCC-CCCCCCCEECCccCcccCCHHHHHHHHHHcCCC--CCCCCCC
Confidence            455 788999999999999999999999999999999  9999963

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=1.9e-14  Score=56.99  Aligned_cols=43  Identities=21%  Similarity=0.302  Sum_probs=38.8

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      +|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|.
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2yu5_A            2 SSGS-SGAGENPFKCSKCDRVFTQRNYLVQHERTHARK--SGPSSG   44 (44)
T ss_dssp             CCSC-CCSCCCSEECSSSSCEESSSHHHHHHHHHCCCC--CSSCCC
T ss_pred             CCcc-ccCCCCCeECCCCCchhCCHHHHHHHhHhcCCC--CCCCCC
Confidence            3566 789999999999999999999999999999999  999884

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=2.9e-14  Score=55.90  Aligned_cols=39  Identities=23%  Similarity=0.399  Sum_probs=35.5

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      +|.++++|.|..|++.|...+.|..|++.|+++  +||.|.
T Consensus         4 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   42 (42)
T 2yte_A            4 GSSGEKPYSCAECKETFSDNNRLVQHQKMHTVK--SGPSSG   42 (42)
T ss_dssp             SSCSCCSCBCTTTCCBCSSHHHHHHHHHHTSCC--SSCCCC
T ss_pred             CcCCCCCeECCCCCCccCCHHHHHHHHHHhCCC--CCCCCC
Confidence            788899999999999999999999999999998  899873

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.9e-14  Score=57.46  Aligned_cols=43  Identities=23%  Similarity=0.305  Sum_probs=39.3

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.
T Consensus         3 H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--kp~~C~~   45 (46)
T 2eor_A            3 SGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             SSS-SSSCCCSEECTTTCCEESSHHHHHHHHHHHHSC--CCSSSTT
T ss_pred             CCc-CcCCCcCccCCCCCCCcCCHHHHHHHHHhcCCC--CCCCCCC
Confidence            555 788999999999999999999999999999999  9999964

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.6e-14  Score=57.74  Aligned_cols=44  Identities=20%  Similarity=0.256  Sum_probs=39.4

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      +|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2yto_A            2 SSGS-SGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGE--RHSGPSS   45 (46)
T ss_dssp             CCCC-CCCSCCCEECSSSCCEESSHHHHHHHHHHHTCC--CBTTTBC
T ss_pred             Cccc-ccCCCCCEECcccCCccCCHhHHHHHHHHcCCC--CCCCCCC
Confidence            3566 788999999999999999999999999999999  9999863

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.7e-14  Score=57.62  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=38.6

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2ytf_A            3 SGS-SGTGEKPFECSECQKAFNTKSNLIVHQRTHTGE--KPSGPSS   45 (46)
T ss_dssp             CCC-SSCCCCSEECSSSCCEESSHHHHHHHHHTSCSS--SSSCCCC
T ss_pred             CCC-CCCCCCCcCCCCCCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            555 788999999999999999999999999999999  9999864

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.8e-14  Score=57.59  Aligned_cols=44  Identities=23%  Similarity=0.261  Sum_probs=38.9

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2em6_A            2 SSGS-SGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCS-CCCCCCCCBCSSSCCBCSSHHHHHHHHTTTSSS--CCCCTTC
T ss_pred             CCcc-ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCC
Confidence            3555 788999999999999999999999999999999  9999864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.9e-14  Score=57.51  Aligned_cols=44  Identities=25%  Similarity=0.285  Sum_probs=39.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      +|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~   45 (46)
T 2eoz_A            2 SSGS-SGTGEKPYSCNVCGKAFVLSAHLNQHLRVHTQE--TLSGPSS   45 (46)
T ss_dssp             CSCC-CCSSCCSEEETTTTEEESSHHHHHHHHHHHSSC--CSSSCCC
T ss_pred             Cccc-cCCCCCCeECcccChhhCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            3566 789999999999999999999999999999999  9999863

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=1.3e-14  Score=57.99  Aligned_cols=43  Identities=21%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2ytp_A            3 SGS-SGTGERHYECSECGKAFARKSTLIMHQRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCC-SSCCCCCEECSSSCCEESSHHHHHHHHTTTSCC--CCCSSCC
T ss_pred             ccc-CcCCCCCeECCcCCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            555 788999999999999999999999999999998  9999863

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=2e-14  Score=57.45  Aligned_cols=44  Identities=25%  Similarity=0.276  Sum_probs=39.2

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|..
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2ep1_A            2 SSGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGE--NPSGPSS   45 (46)
T ss_dssp             CCCC-CCSSCCSSCCSSSCCCCSSHHHHHHHHGGGSSS--CCCSSSC
T ss_pred             cccc-CCCCCCCcCCCCCCchhCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            3566 788999999999999999999999999999999  9999863

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.45  E-value=2.2e-14  Score=56.74  Aligned_cols=43  Identities=28%  Similarity=0.400  Sum_probs=38.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2eof_A            2 SSGS-SGTGEKPYECNECQKAFNTKSNLMVHQRTHTGE--SGPSSG   44 (44)
T ss_dssp             CCSS-CCSCCCSEECTTTCCEESCHHHHHHHHHHTTTS--SCSCCC
T ss_pred             CCcc-CCCCCCCeECCCCCcccCCHhHHHHHHHHhCCC--CCCCCC
Confidence            3566 788999999999999999999999999999999  999884

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.6e-14  Score=57.74  Aligned_cols=43  Identities=23%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2yti_A            3 SGS-SGTGEKPYKCNECGKVFTQNSHLARHRGIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCC-CCSCCCTTCCSSSCCCCSSHHHHHHHHTTTSCS--CCSSTTC
T ss_pred             CCc-CCCCCcCeECCCCCcccCChhHHHHHhHhcCCC--CCCCCCC
Confidence            555 788899999999999999999999999999998  9999863

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.7e-14  Score=57.69  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=39.0

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|+.
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eq2_A            2 SSGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCC-SSSSSCSSSCCSSCCCCSSHHHHHHHGGGGCCC--CCCCCCC
T ss_pred             Cccc-ccCCCCCeECCCCCcccCCHHHHHHHHHHcCCC--CCCCCCC
Confidence            3555 788999999999999999999999999999999  9999863

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.44  E-value=1.7e-14  Score=57.66  Aligned_cols=44  Identities=25%  Similarity=0.332  Sum_probs=39.0

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2yth_A            2 SSGS-SGSGEKPFQCEECGKRFTQNSHLHSHQRVHTGE--KPSGPSS   45 (46)
T ss_dssp             CCCS-CCCCSSSBCCSSSCCCBSSHHHHHHHGGGGTTC--CCSSCCC
T ss_pred             Cccc-CCCCCcCCCCCCCCcccCCHHHHHHHHHhcCCC--CCCCCCC
Confidence            3555 788999999999999999999999999999999  9999863

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.6e-14  Score=57.68  Aligned_cols=44  Identities=23%  Similarity=0.284  Sum_probs=38.8

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|..
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~p~~C~~   45 (46)
T 2yts_A            2 SSGS-SGTGEKPYICNECGKSFIQKSHLNRHRRIHTGE--KPSGPSS   45 (46)
T ss_dssp             CCSC-CCCSCCSEECSSSCCEESSHHHHHHHGGGTSSC--CSSCCCC
T ss_pred             CCCC-CCCCCcCEECCCCChhhCChHHHHHHHHhcCCC--CCcCCCC
Confidence            3555 788999999999999999999999999999998  9999863

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.43  E-value=8.6e-15  Score=60.48  Aligned_cols=52  Identities=12%  Similarity=0.111  Sum_probs=46.1

Q ss_pred             CccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeee
Q psy6273          10 DVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFS   64 (82)
Q Consensus        10 ~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~   64 (82)
                      ++.|.....|..|+. .|.++++|.|..|++.|...+.|..|++.|+++  +||.
T Consensus         3 ~k~~~~~~~l~~h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--kp~~   54 (54)
T 1yui_A            3 AKRAKHPPGTEKPRS-RSQSEQPATCPICYAVIRQSRNLRRHLELRHFA--KPGV   54 (54)
T ss_dssp             CCCCSCSSCCCCCHH-HHTSSCCEECTTTCCEESSHHHHHHHHHHHTTT--SCCC
T ss_pred             ccccCCCcchhhHHH-hcCCCCCccCCCCCcccCCHHHHHHHHHHhccC--CCCC
Confidence            356677777888998 999999999999999999999999999999999  8873

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=2.6e-14  Score=57.08  Aligned_cols=43  Identities=19%  Similarity=0.276  Sum_probs=38.1

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|..
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~~   45 (46)
T 2emg_A            3 SGS-SGTGENPFICSECGKVFTHKTNLIIHQKIHTGE--RPSGPSS   45 (46)
T ss_dssp             CCC-CCCSCCSCBCTTTCCBCSSHHHHHHHHTTTSCC--CCSCSCC
T ss_pred             CCC-CCCCCCCEECCccCcccCCHHHHHHHHHHhCCC--CCCCCCC
Confidence            555 788899999999999999999999999999998  9999863

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=2.9e-14  Score=56.95  Aligned_cols=43  Identities=21%  Similarity=0.262  Sum_probs=38.5

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+.
T Consensus         3 H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2emi_A            3 SGS-SGTGERHYECSECGKAFIQKSTLSMHQRIHRGE--KPSGPSS   45 (46)
T ss_dssp             CCC-SCSSCCCEECSSSCCEESSHHHHHHHHGGGCSC--CCCSCCC
T ss_pred             CCc-ccCCCCCCCCCCCCcccCCHHHHHHHHhHhCCC--CCCCCCC
Confidence            555 788999999999999999999999999999999  9999863

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=1.9e-14  Score=56.94  Aligned_cols=43  Identities=26%  Similarity=0.361  Sum_probs=38.1

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2en7_A            2 SSGS-SGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGE--SGPSSG   44 (44)
T ss_dssp             CSCC-CSSSSSSSCCTTTCCCCSSHHHHHHHHTTTCCS--SSSCCC
T ss_pred             CCCc-CCCCCcCeECCCCCCccCCHHHHHHHhhhcCCC--CCCCCC
Confidence            3555 788999999999999999999999999999998  899884

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.43  E-value=3e-14  Score=63.44  Aligned_cols=49  Identities=24%  Similarity=0.550  Sum_probs=45.6

Q ss_pred             cccc--ccchhhhcCcHHHHHHHHHhcCCCCCeeecCc--ccccccCcccccccC
Q psy6273          32 SFAC--DQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL--CGEVFRSHQGYKIHH   82 (82)
Q Consensus        32 ~~~c--~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~--C~~~f~~~~~l~~H~   82 (82)
                      ||.|  +.|++.|.....|..|++.|.++  +||.|+.  |++.|.....|..|+
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~h~~~--~~~~C~~~~C~~~f~~~~~l~~H~   53 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQ--LPYECPHEGCDKRFSLPSRLKRHE   53 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHHHHTT--CCEECCSTTCCCEESSHHHHHHHH
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHHhCCC--CCeeCCCCCCcCccCCHHHHHHHH
Confidence            5789  89999999999999999999999  9999988  999999999998874

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.43  E-value=1.1e-13  Score=55.72  Aligned_cols=39  Identities=18%  Similarity=0.360  Sum_probs=36.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchh
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVS   40 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~   40 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|++
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           10 RKQVACEICGKIFRDVYHLNRHKL-SHSGEKPYSSGPSSG   48 (48)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG-GSCSCCCCCSCCCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH-hcCCCCCccCCCCCC
Confidence            478999999999999999999998 999999999999974

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=2.5e-14  Score=57.15  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=39.4

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~   44 (46)
T 2en3_A            2 SSGS-SGTGEKPFQCKECGMNFSWSCSLFKHLRSHERT--DPSGPS   44 (46)
T ss_dssp             CCCC-CSCCCCSEECSSSCCEESSSHHHHHHHHHHHHS--CCSSCS
T ss_pred             cccc-ccCCCCCeeCcccChhhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            3566 889999999999999999999999999999999  999986

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.43  E-value=2.6e-14  Score=57.11  Aligned_cols=43  Identities=21%  Similarity=0.297  Sum_probs=38.4

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|.
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2eq1_A            2 SSGS-SGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGE--KPSGPS   44 (46)
T ss_dssp             CCCC-CCCCSCCCCCTTTTCCCSSHHHHHHHHTTTCCS--CCSSCC
T ss_pred             Cccc-ccCCCCCeECCcCChhhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            3555 788999999999999999999999999999998  999986

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.42  E-value=4.3e-14  Score=55.39  Aligned_cols=41  Identities=20%  Similarity=0.274  Sum_probs=36.4

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|
T Consensus         2 H~~-~H~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~--k~~~C   42 (42)
T 2epc_A            2 SSG-SSGGETPYLCGQCGKSFTQRGSLAVHQRSCSQS--GPSSG   42 (42)
T ss_dssp             CCS-CCCSSCCEECSSSCCEESSHHHHHHHHHHTTCC--CCCCC
T ss_pred             CCc-cCCCCCCeECCCCCcccCCHHHHHHHhhhcCCC--CCCCC
Confidence            344 788899999999999999999999999999998  89987

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=2.5e-14  Score=56.65  Aligned_cols=42  Identities=17%  Similarity=0.271  Sum_probs=37.7

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|+
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2eoj_A            3 SGS-SGTGENPYECCECGKVFSRKDQLVSHQKTHSGQ--SGPSSG   44 (44)
T ss_dssp             SCC-SSSSCCSCEETTTTEECSSHHHHHHHHTTSSSS--CSCCCC
T ss_pred             Ccc-ccCCCcCeeCCCCCCccCCHHHHHHHHHHcCCC--CCCCCC
Confidence            555 788999999999999999999999999999998  899884

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=2.6e-14  Score=57.09  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=38.4

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|.
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2yrj_A            2 SSGS-SGTGEKPYRCGECGKAFAQKANLTQHQRIHTGE--KPSGPS   44 (46)
T ss_dssp             CCCC-CCCCCCCEECSSSCCEESSHHHHHHHHTTTSSC--CSSCSC
T ss_pred             CCcc-CCCCCCCeECCCCCCccCCHHHHHHHHHHcCCC--CCCCCC
Confidence            3555 788999999999999999999999999999998  999986

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=3.2e-14  Score=56.86  Aligned_cols=42  Identities=21%  Similarity=0.255  Sum_probs=38.8

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|.
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2emz_A            3 SGS-SGSGERPFKCNECGKGFGRRSHLAGHLRLHSRE--KSSGPS   44 (46)
T ss_dssp             CCS-CSSCCCSCCCSSSCCCCSSHHHHHHHHHHHHHT--TCCCSC
T ss_pred             CCc-CCCCCCCeECCCCCcccCCHHHHHHHHHHhCCC--CCCCCC
Confidence            555 789999999999999999999999999999999  999996

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=6.6e-14  Score=55.43  Aligned_cols=42  Identities=19%  Similarity=0.252  Sum_probs=37.6

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      |+. +|.++++|.|..|++.|.....|..|++.|+++  +||.|.
T Consensus         3 h~~-~h~~~~~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (44)
T 2eou_A            3 SGS-SGAAKTTSECQECGKIFRHSSLLIEHQALHAGE--SGPSSG   44 (44)
T ss_dssp             CSC-SCSSSCCCCCTTTCCCCSSHHHHHHHHHHHTTS--CCCCCC
T ss_pred             CCC-CCCCCcCeECCCCCcccCCHHHHHHHHHHHCCC--CCCCCC
Confidence            444 788899999999999999999999999999999  999884

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.42  E-value=2.5e-14  Score=57.19  Aligned_cols=43  Identities=23%  Similarity=0.280  Sum_probs=37.4

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      |++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|+.
T Consensus         3 h~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   45 (46)
T 2eon_A            3 SGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGE--RPSGPSS   45 (46)
T ss_dssp             CSS-SCSSCCSCBCSSSCCBCSSHHHHHHHTTTTTSC--CSCTTSC
T ss_pred             CCC-CCCCCcccCCCCCCcccCcHHHHHHHHHhcCCC--CCCCCCC
Confidence            445 788899999999999999999999999999998  8998863

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=3.2e-14  Score=55.80  Aligned_cols=41  Identities=17%  Similarity=0.161  Sum_probs=37.2

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|
T Consensus         2 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C   42 (42)
T 2en2_A            2 SSG-SSGGEKPYKCETCGARFVQVAHLRAHVLIHTGS--GPSSG   42 (42)
T ss_dssp             CCC-CCCSSCSEECTTTCCEESSHHHHHHHTHHHHSC--CSSCC
T ss_pred             CCc-ccCCCCCEeCCCcChhhCCHHHHHHHHHHcCCC--CCCCC
Confidence            445 788999999999999999999999999999999  89987

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.41  E-value=1.7e-14  Score=56.55  Aligned_cols=41  Identities=24%  Similarity=0.321  Sum_probs=36.0

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|
T Consensus         2 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C   42 (42)
T 2ytb_A            2 SSG-SSGGEKPYRCDQCGKAFSQKGSLIVHIRVHTGS--GPSSG   42 (42)
T ss_dssp             CCC-CCCSCCSBCCTTTTCCBSSHHHHHTTGGGTSCC--SCCCC
T ss_pred             Ccc-ccCCCCCeeCCCccchhCCHHHHHHHHHHhCCC--CCCCC
Confidence            455 788899999999999999999999999999988  88877

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=3.5e-14  Score=56.74  Aligned_cols=42  Identities=21%  Similarity=0.287  Sum_probs=37.9

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcC-CCCCeeecC
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHD-EFVNLFSCP   66 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~-~~~~~~~C~   66 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|++ +  +||.|.
T Consensus         3 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~~--~~~~C~   45 (46)
T 2eoy_A            3 SGS-SGQKEKCFKCNKCEKTFSCSKYLTQHERIHTRGV--KSGPSS   45 (46)
T ss_dssp             CCC-CCCCSCCEECSSSCCEESSSHHHHHHHTTCCSCC--TTSSSC
T ss_pred             Ccc-ccCCCCCEECcCCCCcCCCHHHHHHHHHHcCCCC--CCCCCC
Confidence            455 78899999999999999999999999999999 8  899986

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=3.4e-14  Score=56.73  Aligned_cols=43  Identities=21%  Similarity=0.279  Sum_probs=38.4

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|.++  +||.|+
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2eq3_A            2 SSGS-SGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGK--KPSGPS   44 (46)
T ss_dssp             CCCC-SSCCCCSSEETTTTEECSSHHHHHHHHTTSCCC--CCCCSC
T ss_pred             Cccc-CCCCCCCeECCCCChhhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            3555 788999999999999999999999999999998  999986

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.40  E-value=5.4e-14  Score=56.19  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=37.7

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      |++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|.
T Consensus         3 h~~-~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2enh_A            3 SGS-SGTGEKPYECDVCRKAFSHHASLTQHQRVHSGE--KPSGPS   44 (46)
T ss_dssp             CCC-CCCCSSSCBCTTTCCBCSSSHHHHHHGGGSCCS--CCCCCC
T ss_pred             CCC-CcCCCCCcCCCCcCchhCCHHHHHHHHHHhCCC--CCCCCC
Confidence            344 788899999999999999999999999999998  999986

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.3e-13  Score=53.63  Aligned_cols=40  Identities=18%  Similarity=0.353  Sum_probs=36.1

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCc
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPL   67 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~   67 (82)
                      +|.++++|.|..|++.|...+.|..|++.|+++  +||.|.+
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~   43 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQTHSD--KSGPSSG   43 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHHHTCT--TCSSSCC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHhhCCC--CCccCCC
Confidence            578889999999999999999999999999998  8998863

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=3.2e-14  Score=56.32  Aligned_cols=43  Identities=19%  Similarity=0.311  Sum_probs=37.8

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      .|++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|.
T Consensus         2 ~H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2emb_A            2 SSGS-SGHTRKRYECSKCQATFNLRKHLIQHQKTHAAK--SGPSSG   44 (44)
T ss_dssp             CCCS-CCCCCSSEECTTTCCEESCHHHHHHHGGGGCCC--CCTTCC
T ss_pred             Cccc-ccCCCCCeECCCCCCccCCHHHHHHHHHHcCCC--CCcCCC
Confidence            3555 788899999999999999999999999999998  899884

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.39  E-value=4.6e-14  Score=55.86  Aligned_cols=43  Identities=21%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      .|++ +|.++++|.|..|++.|.....|..|++.|+++  +||.|.
T Consensus         2 ~H~~-~H~~~~~~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~C~   44 (44)
T 2eox_A            2 SSGS-SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRK--SGPSSG   44 (44)
T ss_dssp             CCCC-CCCCCCCEEETTTTEEESSSHHHHTTHHHHCCC--CCCSCC
T ss_pred             CCCc-CCCCCCCeECcccCcccCCHHHHHHHHHHhCCC--CCCCCC
Confidence            3555 789999999999999999999999999999999  999873

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=5.8e-13  Score=53.07  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytn_A           10 KKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHGG-GTSCCCCCSCCCC
T ss_pred             CcCeECCCCCCeeCCHHHHHHHhh-hcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=3.8e-14  Score=55.60  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=35.3

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|
T Consensus         2 H~~-~H~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--~~~~C   42 (42)
T 2eos_A            2 SSG-SSGGEKPYPCEICGTRFRHLQTLKSHLRIHTGS--GPSSG   42 (42)
T ss_dssp             CCS-CCSSSCCBCCSSSCCCBSSHHHHHHHTTTTSCC--SSTTC
T ss_pred             CCc-ccCCCCCEECCCCCCccCCHHHHHHHHHhcCCC--CCCCC
Confidence            344 788889999999999999999999999999988  88876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=7e-13  Score=52.83  Aligned_cols=37  Identities=19%  Similarity=0.314  Sum_probs=34.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2epz_A           10 EKPFDCIDCGKAFSDHIGLNQHRR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSBCCTTTCCCBSSHHHHHHHHT-TTTTCCCCSSCCC
T ss_pred             CCCeECCCCCceeCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=8.3e-13  Score=52.61  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eoq_A           10 EKPFKCDICGKSFCGRSRLNRHSM-VHTAEKPSGPSSG   46 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHH-HTTCCCSSSCCCC
T ss_pred             CCCcCCCcCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=8.1e-13  Score=52.66  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=34.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytq_A           10 EKPYGCSECGKAFSSKSYLIIHMR-THSGEKPSGPSSG   46 (46)
T ss_dssp             CCSCBCSSSCCBCSCHHHHHHHHT-TTCCSCSSCCCCC
T ss_pred             CCCcCCCccChhhCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.38  E-value=7.7e-13  Score=52.67  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=34.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eq4_A           10 EKLYNCKECGKSFSRAPCLLKHER-LHSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCBTTTTBCCSCHHHHHHHHH-HCCSSSCCCCCCC
T ss_pred             CCCeECCCCCCccCchHHHHHHHH-hcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.38  E-value=4e-13  Score=53.36  Aligned_cols=38  Identities=16%  Similarity=0.339  Sum_probs=35.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccch
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCV   39 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~   39 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~~~C~~cg   45 (45)
T 2epq_A            8 EKPYSCPVCGLRFKRKDRMSYHVR-SHDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHH-HHSCCCCCCCCCCC
T ss_pred             CCCCcCCCCCcccCCHHHHHHHHH-HccCCCCCCCcCCC
Confidence            589999999999999999999998 99999999999885

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=5.2e-16  Score=67.51  Aligned_cols=55  Identities=16%  Similarity=0.266  Sum_probs=49.1

Q ss_pred             HHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          18 ALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        18 ~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .|..|++ .|.++++|.|..|++.|.....|..       +  ++|.|..|++.|...+.|..|+
T Consensus         5 ~l~~H~~-~h~~~~~~~C~~C~k~f~~~~~l~~-------~--~~~~C~~C~~~f~~~~~l~~H~   59 (73)
T 2ctu_A            5 SSGKRQK-IHLGDRSQKCSKCGIIFIRRSTLSR-------R--KTPMCEKCRKDSCQEAALNKDE   59 (73)
T ss_dssp             SCCCCCC-CCCCCSEEECSSSCCEEECCCCCCC-------S--SSCCCHHHHHTCSCCCSSCCCS
T ss_pred             hHHHHHH-HhCCCCCeeCCcccchhCCHHHhCc-------C--CCCCCCCCChhhcCHHHHHHHH
Confidence            4667887 8999999999999999999888765       5  8999999999999999999885

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=8.6e-13  Score=52.56  Aligned_cols=37  Identities=19%  Similarity=0.236  Sum_probs=34.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2enc_A           10 EKPFKCEECGKGFYTNSQCYSHQR-SHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HSCCSSCCSSCCC
T ss_pred             CCCcCCCCCCCcCCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=9.2e-13  Score=52.44  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eop_A           10 EKPHECRECGKSFSFNSQLIVHQR-IHTGENPSGPSSG   46 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHT-TTTTSCCSCCCCC
T ss_pred             CCCeeCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=8.9e-13  Score=52.52  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|+. +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ep2_A           10 EKPYECSICGKSFTKKSQLHVHQQ-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-TTSSCCSCCSCCC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=99.37  E-value=6.9e-13  Score=52.87  Aligned_cols=37  Identities=24%  Similarity=0.324  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emk_A           10 EKPYECKECGKAFSQTTHLIQHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSCBCSSSCCBCSCHHHHHHHHH-HHSSCCCSSCCCC
T ss_pred             CCceECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=7.9e-13  Score=52.67  Aligned_cols=37  Identities=24%  Similarity=0.403  Sum_probs=34.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eml_A           10 EKPYECSVCGKAFSHRQSLSVHQR-IHSGKKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHG-GGSSCCCSCSSCC
T ss_pred             CCCeeCCCcCCccCCHHHHHHHHH-HhcCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=7.7e-13  Score=52.71  Aligned_cols=37  Identities=30%  Similarity=0.482  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2eq0_A           10 EKPYKCHECGKVFRRNSHLARHQL-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHT-TTCCCCCSCCSCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=7.6e-13  Score=52.72  Aligned_cols=37  Identities=24%  Similarity=0.377  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ene_A           10 EKPYKCNECGKVFRHNSYLSRHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHT-TTCCCCCCSCCCC
T ss_pred             CCCeECCCCCchhCChHHHHHHHh-hcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=1e-13  Score=55.77  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             hCCCCCccccc--cchhhhcCcHHHHHHHHHhcCCCCCeeecCcc
Q psy6273          26 VHTETKSFACD--QCVSYFKTNSALLQHKRKMHDEFVNLFSCPLC   68 (82)
Q Consensus        26 ~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C   68 (82)
                      +|.++++|.|.  .|++.|.....|..|++.|+++  +||.|..|
T Consensus         6 ~H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--k~~~C~~C   48 (48)
T 2ent_A            6 SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGV--KPSGPSSG   48 (48)
T ss_dssp             SSCCCCCEECCSSSCCCEESSHHHHHHHHTTSCCC--CSCSSCCC
T ss_pred             CcCCCCCeECCCCCCCCccCCHHHHHHHHHHhCCC--CCCCCCCC
Confidence            68888999997  8999999999999999999998  89999876

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.37  E-value=7.8e-13  Score=52.65  Aligned_cols=37  Identities=27%  Similarity=0.394  Sum_probs=34.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eoe_A           10 EKPYKCNECGKVFTQNSHLANHQR-IHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHG-GGSCCCSCSSCCC
T ss_pred             CCCeECCCcChhhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=99.37  E-value=7e-13  Score=52.80  Aligned_cols=37  Identities=22%  Similarity=0.279  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2el4_A           10 VKPYGCSQCAKTFSLKSQLIVHQR-SHTGVKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHGG-GSSSCCCSCCTTC
T ss_pred             CCceECCCCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=6.2e-13  Score=53.01  Aligned_cols=37  Identities=19%  Similarity=0.341  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2emf_A           10 GKHFECTECGKAFTRKSTLSMHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESCHHHHHHHGG-GTSCSSCSCCCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=6.5e-13  Score=52.95  Aligned_cols=37  Identities=30%  Similarity=0.404  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2elz_A           10 EKPYKCEDCGKGYNRRLNLDMHQR-VHMGEKTSGPSSG   46 (46)
T ss_dssp             CSSCBCSSSCCBCSSHHHHHHHGG-GGGSCCCCCSCCC
T ss_pred             CCCeeCcccCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=5.5e-13  Score=53.18  Aligned_cols=39  Identities=21%  Similarity=0.393  Sum_probs=36.1

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      +|.++++|.|..|++.|.....|..|++.|+++  +||.|.
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~   44 (46)
T 2eom_A            6 SGHGERGHRCSDCGKFFLQASNFIQHRRIHTGE--KPSGPS   44 (46)
T ss_dssp             CCCCCSSCCCSSSCCCCSSHHHHHHHHHHHSSC--CCSSCC
T ss_pred             CCCCCCCcCCCCCCCeeCChHHHHHHHHHhCCC--CCCCCC
Confidence            688899999999999999999999999999999  999986

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=8.1e-13  Score=52.67  Aligned_cols=37  Identities=22%  Similarity=0.362  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em5_A           10 TKSHQCHECGRGFTLKSHLNQHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHT-TTSCSCCSSCCCC
T ss_pred             CCCeECCcCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            478999999999999999999998 9999999999876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=9.6e-13  Score=52.39  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytr_A           10 EKPYKCNECGKAFSQTSKLARHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTCCTTTCCCCSSHHHHHHHHT-TTTTCSCCCSCCC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=99.36  E-value=9.2e-13  Score=52.50  Aligned_cols=37  Identities=24%  Similarity=0.364  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2el6_A           10 VNPYKCSQCEKSFSGKLRLLVHQR-MHTREKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHG-GGCCSSCCSCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=2.7e-13  Score=53.85  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=35.4

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      +|.++++|.|..|++.|.....|..|++.|+++  +||.|+
T Consensus         6 ~h~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~C~   44 (45)
T 2epu_A            6 SGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGE--KSGPSS   44 (45)
T ss_dssp             CCCSCCSEEETTTTEEESSHHHHHHHHTTTSSC--CCCCSC
T ss_pred             CCCCCcCccCCCCCCccCChHHHHHHHHHhCCC--CCCCCC
Confidence            678889999999999999999999999999998  899886

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6.7e-13  Score=52.41  Aligned_cols=37  Identities=19%  Similarity=0.298  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   44 (44)
T 2emx_A            8 EKPFGCSCCEKAFSSKSYLLVHQQ-THAEEKPSGPSSG   44 (44)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH-HHTSSCSCSCCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=7.1e-13  Score=52.81  Aligned_cols=37  Identities=30%  Similarity=0.420  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2em7_A           10 EKPYKCEECGKGFICRRDLYTHHM-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHGG-GGTTCCCSSTTCC
T ss_pred             CcCccCCCccchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=1.1e-12  Score=52.19  Aligned_cols=37  Identities=24%  Similarity=0.345  Sum_probs=34.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|+. +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ytj_A           10 EKPYICAECGKAFTIRSNLIKHQK-IHTKQKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HTSCCCCSSCSCC
T ss_pred             CcCeECCCCChhhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=7.8e-13  Score=52.69  Aligned_cols=37  Identities=27%  Similarity=0.406  Sum_probs=34.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ysp_A           10 EKPYKCEKCGKGYNSKFNLDMHQK-VHTGERPSGPSSG   46 (46)
T ss_dssp             CCSEEETTTTEEESCHHHHHHHHT-TSCSCCSSCCSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-hhCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=99.36  E-value=7.9e-13  Score=52.67  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em0_A           10 EKTWKCRECDMCFSQASSLRLHQN-VHVGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCCSSSCCCCSSHHHHHHHGG-GGSSSSCSCSSCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHH-HcCCCCCcCCCCC
Confidence            579999999999999999999998 9999999999876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=6.9e-13  Score=52.85  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emy_A           10 ENPYECHECGKAFSRKYQLISHQR-THAGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH-HHTTSCCSCSSCC
T ss_pred             CcCcCCCCCCcccCcHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.36  E-value=9.8e-13  Score=52.37  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eov_A           10 EKPYKCSDCGKSFTWKSRLRIHQK-CHTGERHSGPSSG   46 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHH-HHSCCSSCCSCCC
T ss_pred             CCCccCCccChhhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=99.36  E-value=7.2e-13  Score=52.79  Aligned_cols=37  Identities=27%  Similarity=0.427  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2ema_A           10 EKRYKCNECGKVFSRNSQLSQHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHT-GGGCCCCCSSSCC
T ss_pred             CcCcCCCCCcchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=7.9e-13  Score=52.64  Aligned_cols=37  Identities=22%  Similarity=0.232  Sum_probs=34.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emm_A           10 ERPHKCNECGKSFIQSAHLIQHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHSCCCTTSSSCC
T ss_pred             CCCeeCCCCChhhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=1e-12  Score=52.32  Aligned_cols=37  Identities=22%  Similarity=0.174  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2en8_A           10 EKSHTCDECGKNFCYISALRIHQR-VHMGEKCSGPSSG   46 (46)
T ss_dssp             CSSEECTTTCCEESSHHHHHHHHT-TTCCSCSSCCSCC
T ss_pred             CCCeECCCcCcccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            478999999999999999999998 9999999999876

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.6e-13  Score=54.27  Aligned_cols=41  Identities=22%  Similarity=0.272  Sum_probs=36.9

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      |++ +|.++++|.|..|++.|...+.|..|++.|+++  +||.|
T Consensus         3 H~~-~H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~--k~~~~   43 (44)
T 2epv_A            3 SGS-SGSGEKPYECNECGKAFIWKSLLIVHERTHAGV--SGPSS   43 (44)
T ss_dssp             CCC-CCCCCCSEECSSSCCEESSHHHHHHHHGGGSSC--SCCCC
T ss_pred             CCc-ccCCCcCeECCCCCcccCchHHHHHHHhHhcCC--CCCCC
Confidence            555 788999999999999999999999999999998  88876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=1.2e-12  Score=52.08  Aligned_cols=37  Identities=22%  Similarity=0.261  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2eme_A           10 EKPYVCDYCGKAFGLSAELVRHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHG-GGCCCSCCSSCCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.35  E-value=9e-13  Score=52.49  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytd_A           10 EKPYKCSECGKAFHRHTHLNEHRR-IHTGYRPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHTCCCSSCSSCC
T ss_pred             CcCeECCCCCCeeCChHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.35  E-value=2.8e-13  Score=52.76  Aligned_cols=38  Identities=18%  Similarity=0.366  Sum_probs=33.4

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      +|.++++|.|..|++.|.....|..|++.|+++  +||.|
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~C   41 (41)
T 2ept_A            4 GSSGQRVYECQECGKSFRQKGSLTLHERIHTGS--GPSSG   41 (41)
T ss_dssp             SCCCCCCEECSSSCCEESSHHHHHHHGGGCCCC--SCSCC
T ss_pred             ccCCCCCeECCCCCCCcCCHHHHHHHHHHhCCC--CCcCC
Confidence            677888999999999999999999999999888  88876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=99.34  E-value=9.8e-13  Score=52.36  Aligned_cols=37  Identities=22%  Similarity=0.314  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em9_A           10 EKPYNCKECGKSFRWASCLLKHQR-VHSGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGG-GGTSCCCCSTTCC
T ss_pred             CcCeECCccccccCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=8.6e-13  Score=52.57  Aligned_cols=37  Identities=27%  Similarity=0.397  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~c   46 (46)
T 2ytk_A           10 EKPYKCNECGKVFTQNSHLTNHWR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             SCSEECSSSCCEESSHHHHHHHHH-HHSSSSCSSCCCC
T ss_pred             CCCEeCCcCCCccCCHHHHHHHHH-HHCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=1.3e-12  Score=52.07  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ep0_A           10 EKPYKCDVCHKSFRYGSSLTVHQR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHT-TTSSSCCCSCCCC
T ss_pred             CCCeeCcccCcccCChHHHHHHHH-HhCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=9.4e-13  Score=52.42  Aligned_cols=37  Identities=19%  Similarity=0.183  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|+. +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2epw_A           10 EKPCKCTECGKAFCWKSQLIMHQR-THVDDKHSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHH-HCCSCCCSCCCCC
T ss_pred             CCCeeCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            478999999999999999999998 9999999999876

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.34  E-value=7.4e-13  Score=52.81  Aligned_cols=37  Identities=19%  Similarity=0.304  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2ytm_A           10 EKPYKCMECGKAFGDNSSCTQHQR-LHTGQRPSGPSSG   46 (46)
T ss_dssp             CCSSSBTTTTBCCSSHHHHHHHHH-HHHSCCCCCCCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.34  E-value=1.1e-12  Score=52.30  Aligned_cols=37  Identities=16%  Similarity=0.177  Sum_probs=34.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2yso_A           10 EKSHQCRECGEIFFQYVSLIEHQV-LHMGQKNSGPSSG   46 (46)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHSCCSCCCTTCC
T ss_pred             CCCEEccccChhhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            478999999999999999999998 9999999999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=9.6e-13  Score=52.42  Aligned_cols=37  Identities=22%  Similarity=0.335  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2en6_A           10 EKPYGCNECGKTFSQKSILSAHQR-THTGEKPSGPSSG   46 (46)
T ss_dssp             SCCEEETTTTEEESSHHHHHHHHH-HHSSCCCSSSCCC
T ss_pred             CcCeECCCCCcccCchHHHHHHHH-HcCCCCCCCCCCC
Confidence            478999999999999999999998 9999999999876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=99.33  E-value=7.6e-13  Score=52.74  Aligned_cols=37  Identities=27%  Similarity=0.372  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ely_A           10 EKPFKCVECGKGFSRRSALNVHHK-LHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSBCCSSSCCCBSSTTHHHHHHH-HHSCCSSCSCCCC
T ss_pred             CCCcccCccCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=8.8e-13  Score=52.56  Aligned_cols=37  Identities=35%  Similarity=0.394  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2em8_A           10 EKPYKCVECGKGYKRRLDLDFHQR-VHTGEKLSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHHCCCCCCSCCC
T ss_pred             CCCeECcccCchhCCHHHHHHHHH-HHcCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=8e-13  Score=52.68  Aligned_cols=37  Identities=22%  Similarity=0.292  Sum_probs=34.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2eoo_A           10 ERPYGCNECGKNFGRHSHLIEHLK-RHFREKSSGPSSG   46 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHHSTTSSCCSCC
T ss_pred             CCCEEccccCcccCCHHHHHHHHH-HHcCCCCCCCCCC
Confidence            579999999999999999999998 8999999999876

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.33  E-value=1.9e-12  Score=51.54  Aligned_cols=37  Identities=24%  Similarity=0.365  Sum_probs=34.3

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~~   46 (46)
T 2ep3_A           10 EKPYRCAECGKAFTDRSNLFTHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHT-TTTTSCCCCTTCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999864

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=7.7e-13  Score=52.70  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=34.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~c   46 (46)
T 2emh_A           10 ERPYICTVCGKAFTDRSNLIKHQK-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHH-HHHCSSCSSSCCC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=1.2e-12  Score=52.13  Aligned_cols=37  Identities=24%  Similarity=0.371  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2en1_A           10 EKPFKCEECGKRFTQNSQLHSHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGG-GGSCCCCSCCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            478999999999999999999998 9999999999876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.32  E-value=8.5e-13  Score=52.58  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2emp_A           10 VKPYMCNECGKAFSVYSSLTTHQV-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHH-HHHCCSCCSCCCC
T ss_pred             CcCeECCCCCchhCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.31  E-value=8e-13  Score=52.65  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=34.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|+. +|.++++|.|..|
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytg_A           10 EKPFKCGECGKSYNQRVHLTQHQR-VHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECTTTCCEESSSHHHHTTGG-GGSSCCSSCSCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=9e-13  Score=52.53  Aligned_cols=37  Identities=22%  Similarity=0.358  Sum_probs=34.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   46 (46)
T 2ytt_A           10 EKPYQCSECGKSFSGSYRLTQHWI-THTREKPSGPSSG   46 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHT-HHHHCCCCSCCCC
T ss_pred             CCCeeCCCCCcccCCHHHHHHHHH-HcCCCCCCCCCCC
Confidence            579999999999999999999998 9999999999876

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=5e-13  Score=60.72  Aligned_cols=49  Identities=22%  Similarity=0.251  Sum_probs=44.4

Q ss_pred             ccccccchhhhcCcHHHHHHHHH-hcCCCCCe--------eecCcccccccCcccccccC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRK-MHDEFVNL--------FSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~-~~~~~~~~--------~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .+.|..|++.|.....|..|++. |.++  ++        |.|..|++.|.....|..|+
T Consensus        25 ~~~C~~C~k~f~~~~~L~~H~~~~H~~~--~~~~~~~c~~~~C~~C~k~f~~~~~L~~H~   82 (95)
T 2ej4_A           25 SRPKKSCDRTFSTMHELVTHVTMEHVGG--PEQNNHVCYWEECPREGKSFKAKYKLVNHI   82 (95)
T ss_dssp             SSSCCCCCCCCSSHHHHHHHHHHTTTCC--TTCSCCCCCCTTCSSTTCCCSSHHHHHHHH
T ss_pred             CCcccccccccCCHHHHHHHHHHhccCC--CCCCccceeccCCCCCCcccCCHHHHHHHH
Confidence            46799999999999999999998 8887  66        99999999999999998874

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.30  E-value=2.9e-12  Score=51.00  Aligned_cols=37  Identities=22%  Similarity=0.401  Sum_probs=34.3

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~~   46 (46)
T 2em2_A           10 EKPFKCKECGKAFRQNIHLASHLR-IHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHCCCCSSCSSCC
T ss_pred             CCCEECCcCCchhCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            478999999999999999999998 9999999999864

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.29  E-value=1.8e-13  Score=60.10  Aligned_cols=57  Identities=18%  Similarity=0.248  Sum_probs=47.6

Q ss_pred             HHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCccccccc
Q psy6273          19 LDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        19 l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      |..|+. .+.+++++.|..|+..|. ...|..|+ .+.++  +|+.|+.|++.|. ...|..|
T Consensus         5 L~~H~~-~~c~~r~~~C~~C~~~~~-~~~L~~H~-~~c~~--~~~~C~~C~~~~~-~~~l~~H   61 (75)
T 2d9k_A            5 SSGHEE-TECPLRLAVCQHCDLELS-ILKLKEHE-DYCGA--RTELCGNCGRNVL-VKDLKTH   61 (75)
T ss_dssp             CSCCCC-CCCCCCCEECSSSCCEEC-HHHHHHHH-HHHHH--CEEECSSSCCEEE-TTGGGTH
T ss_pred             HHhhCc-ccCCCcccCCcccChHhh-HHHHHHHH-hHcCC--CceEcccCCCcCc-HHHHHHH
Confidence            556766 788899999999999884 88899998 88888  9999999999877 4677766

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.28  E-value=7.8e-13  Score=52.68  Aligned_cols=37  Identities=27%  Similarity=0.351  Sum_probs=34.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.|
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~C   46 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQNSHLARHRR-VHTGGKPSGPSSG   46 (46)
T ss_dssp             CSSEECSSSCCEESSSHHHHHHTH-HHHSCCCSCSCCC
T ss_pred             CCCeECCcCCchhCCHHHHHHHHH-hcCCCCCCCCCCC
Confidence            479999999999999999999998 9999999999876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.27  E-value=7.8e-12  Score=49.86  Aligned_cols=38  Identities=21%  Similarity=0.252  Sum_probs=34.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|..|++.|.....|..|++.+|.++++|.|..|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A           10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCSBCCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             CCCEECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            57999999999999999999998547899999999876

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.26  E-value=9.5e-12  Score=49.44  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enf_A           10 EKPYKCNECGKVFTQNSHLVRHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHHT-TTTTSSCCCCSC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHH-hhCCCCCCCCCC
Confidence            479999999999999999999998 999999999874

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-11  Score=49.28  Aligned_cols=36  Identities=17%  Similarity=0.265  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2emg_A           10 ENPFICSECGKVFTHKTNLIIHQK-IHTGERPSGPSS   45 (46)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHT-TTSCCCCSCSCC
T ss_pred             CCCEECCccCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            478999999999999999999998 999999999864

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-11  Score=49.24  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eoh_A           10 KKPYECKECRKTFIQIGHLNQHKR-VHTGERSSGPSS   45 (46)
T ss_dssp             SCSCCCSSSCCCCSSHHHHHHHHH-HCSSCCSCSTTC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=99.25  E-value=9.4e-12  Score=48.51  Aligned_cols=35  Identities=17%  Similarity=0.347  Sum_probs=32.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2el5_A            8 ENPYECSECGKAFNRKDQLISHQR-THAGESGPSSG   42 (42)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHG-GGCCCCSCCCC
T ss_pred             CCCccCCCcChhhCCHHHHHHHHH-hcCCCCCCCCC
Confidence            579999999999999999999998 99999999884

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=9.8e-12  Score=49.40  Aligned_cols=36  Identities=25%  Similarity=0.365  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yti_A           10 EKPYKCNECGKVFTQNSHLARHRG-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCTTCCSSSCCCCSSHHHHHHHHT-TTSCSCCSSTTC
T ss_pred             CcCeECCCCCcccCChhHHHHHhH-hcCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=8.8e-12  Score=49.57  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=33.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytp_A           10 ERHYECSECGKAFARKSTLIMHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHT-TTSCCCCCSSCC
T ss_pred             CCCeECCcCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            579999999999999999999998 999999999874

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.25  E-value=8.2e-12  Score=49.03  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=33.3

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|++
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   43 (43)
T 2yrm_A            8 NGAFFCNECDCRFSEEASLKRHTL-QTHSDKSGPSSG   43 (43)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHHH-HHTCTTCSSSCC
T ss_pred             CCCEECCCCCCeeCChHHHHHHHH-hhCCCCCccCCC
Confidence            478999999999999999999998 999999999863

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.3e-11  Score=48.10  Aligned_cols=35  Identities=20%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|.
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   42 (42)
T 2yte_A            8 EKPYSCAECKETFSDNNRLVQHQK-MHTVKSGPSSG   42 (42)
T ss_dssp             CCSCBCTTTCCBCSSHHHHHHHHH-HTSCCSSCCCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            579999999999999999999998 99999999874

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=8.3e-12  Score=49.67  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eon_A           10 EKPYKCQVCGKAFRVSSHLVQHHS-VHSGERPSGPSS   45 (46)
T ss_dssp             CCSCBCSSSCCBCSSHHHHHHHTT-TTTSCCSCTTSC
T ss_pred             CcccCCCCCCcccCcHHHHHHHHH-hcCCCCCCCCCC
Confidence            579999999999999999999998 999999999874

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.25  E-value=1.1e-11  Score=49.25  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ytf_A           10 EKPFECSECQKAFNTKSNLIVHQR-THTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-TSCSSSSSCCCC
T ss_pred             CCCcCCCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=7.9e-12  Score=49.49  Aligned_cols=35  Identities=23%  Similarity=0.409  Sum_probs=32.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~   44 (45)
T 2epu_A           10 QKPFECTHCGKSFRAKGNLVTHQR-IHTGEKSGPSS   44 (45)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHT-TTSSCCCCCSC
T ss_pred             CcCccCCCCCCccCChHHHHHHHH-HhCCCCCCCCC
Confidence            579999999999999999999998 99999999986

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.2e-11  Score=49.14  Aligned_cols=36  Identities=31%  Similarity=0.433  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em6_A           10 EKCYKCDVCGKEFSQSSHLQTHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             CCCCBCSSSCCBCSSHHHHHHHHT-TTSSSCCCCTTC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=99.24  E-value=8.1e-12  Score=49.67  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|++
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emj_A           10 EKPFECAECGKSFSISSQLATHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHH-HHTTSCSSSSCC
T ss_pred             CCCEECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999874

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1.3e-11  Score=48.99  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2ep1_A           10 EKPYECSDCGKSFIKKSQLHVHQR-IHTGENPSGPSS   45 (46)
T ss_dssp             CCSSCCSSSCCCCSSHHHHHHHHG-GGSSSCCCSSSC
T ss_pred             CCCcCCCCCCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            478999999999999999999998 999999999874

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.24  E-value=1e-11  Score=49.33  Aligned_cols=36  Identities=25%  Similarity=0.380  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq2_A           10 GKPYQCNECGKAFSQTSKLARHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             SCSSSCCSSCCCCSSHHHHHHHGG-GGCCCCCCCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.3e-11  Score=48.99  Aligned_cols=36  Identities=19%  Similarity=0.361  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emi_A           10 ERHYECSECGKAFIQKSTLSMHQR-IHRGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHG-GGCSCCCCSCCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHh-HhCCCCCCCCCC
Confidence            478999999999999999999998 999999999864

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-11  Score=49.30  Aligned_cols=36  Identities=22%  Similarity=0.383  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2em3_A           10 EKPYECKVCSKAFTQKAHLAQHQK-THTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HHCCCCCCCSCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.1e-11  Score=49.19  Aligned_cols=36  Identities=22%  Similarity=0.381  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~p~~C~~   45 (46)
T 2yts_A           10 EKPYICNECGKSFIQKSHLNRHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHGG-GTSSCCSSCCCC
T ss_pred             CcCEECCCCChhhCChHHHHHHHH-hcCCCCCcCCCC
Confidence            479999999999999999999998 999999999864

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.5e-11  Score=48.87  Aligned_cols=36  Identities=25%  Similarity=0.486  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq1_A           10 EKPYKCNECGKAFRAHSNLTTHQV-IHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCTTTTCCCSSHHHHHHHHT-TTCCSCCSSCCC
T ss_pred             CCCeECCcCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.23  E-value=1.2e-11  Score=49.19  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2en9_A           10 KKLFKCNECKKTFTQSSSLTVHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             SCCCBCTTTCCBCSSHHHHHHHHH-HHTSSCCCSCCC
T ss_pred             CCCEECCccCcccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=8.7e-12  Score=49.58  Aligned_cols=36  Identities=28%  Similarity=0.361  Sum_probs=33.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2em4_A           10 QRPYECIECGKAFKTKSSLICHRR-SHTGEKPSGPSS   45 (46)
T ss_dssp             SSSEECSSSCCEESSHHHHHHHHH-HHSSSSCCCCCC
T ss_pred             CcCcCCCCCCCccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.23  E-value=1.2e-11  Score=49.22  Aligned_cols=36  Identities=17%  Similarity=0.180  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eom_A           10 ERGHRCSDCGKFFLQASNFIQHRR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCSSSCCCCSSHHHHHHHHH-HHSSCCCSSCCC
T ss_pred             CCCcCCCCCCCeeCChHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=99.23  E-value=1.4e-11  Score=47.93  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFAC   35 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   35 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|
T Consensus         9 ~~~~~C~~C~k~f~~~~~l~~H~~-~H~~~k~~~C   42 (42)
T 2epc_A            9 ETPYLCGQCGKSFTQRGSLAVHQR-SCSQSGPSSG   42 (42)
T ss_dssp             SCCEECSSSCCEESSHHHHHHHHH-HTTCCCCCCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHhh-hcCCCCCCCC
Confidence            479999999999999999999998 9999999876

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.3e-11  Score=49.02  Aligned_cols=36  Identities=22%  Similarity=0.378  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yth_A           10 EKPFQCEECGKRFTQNSHLHSHQR-VHTGEKPSGPSS   45 (46)
T ss_dssp             SSSBCCSSSCCCBSSHHHHHHHGG-GGTTCCCSSCCC
T ss_pred             CcCCCCCCCCcccCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.22  E-value=1.2e-11  Score=48.01  Aligned_cols=34  Identities=21%  Similarity=0.412  Sum_probs=31.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFAC   35 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   35 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|
T Consensus         8 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C   41 (41)
T 2ept_A            8 QRVYECQECGKSFRQKGSLTLHER-IHTGSGPSSG   41 (41)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHGG-GCCCCSCSCC
T ss_pred             CCCeECCCCCCCcCCHHHHHHHHH-HhCCCCCcCC
Confidence            579999999999999999999998 9999999876

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.5e-11  Score=48.33  Aligned_cols=35  Identities=23%  Similarity=0.393  Sum_probs=32.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2en7_A           10 MKPYVCNECGKAFRSKSYLIIHTR-THTGESGPSSG   44 (44)
T ss_dssp             SSSSCCTTTCCCCSSHHHHHHHHT-TTCCSSSSCCC
T ss_pred             CcCeECCCCCCccCCHHHHHHHhh-hcCCCCCCCCC
Confidence            478999999999999999999998 99999999874

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.6e-11  Score=48.77  Aligned_cols=36  Identities=22%  Similarity=0.404  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yrj_A           10 EKPYRCGECGKAFAQKANLTQHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHT-TTSSCCSSCSCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            478999999999999999999998 999999999864

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.7e-11  Score=49.05  Aligned_cols=37  Identities=16%  Similarity=0.274  Sum_probs=34.5

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCCCccccccc
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTETKSFACDQC   38 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c   38 (82)
                      ++||.|.  .|++.|.....|..|++ +|.++++|.|..|
T Consensus        10 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~C   48 (48)
T 2ent_A           10 EKPFACTWPGCGWRFSRSDELSRHRR-SHSGVKPSGPSSG   48 (48)
T ss_dssp             CCCEECCSSSCCCEESSHHHHHHHHT-TSCCCCSCSSCCC
T ss_pred             CCCeECCCCCCCCccCCHHHHHHHHH-HhCCCCCCCCCCC
Confidence            4789998  89999999999999998 9999999999876

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.2e-11  Score=49.16  Aligned_cols=36  Identities=25%  Similarity=0.438  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eow_A           10 EKPYKCNECGKAFRARSSLAIHQA-THSGEKPSGPSS   45 (46)
T ss_dssp             CCCEECTTSCCEESSHHHHHHHHH-HHCCCSCSCTTC
T ss_pred             CCCeeccccCChhcCHHHHHHHHH-HcCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.22  E-value=1.4e-11  Score=48.49  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eoj_A           10 ENPYECCECGKVFSRKDQLVSHQK-THSGQSGPSSG   44 (44)
T ss_dssp             CCSCEETTTTEECSSHHHHHHHHT-TSSSSCSCCCC
T ss_pred             CcCeeCCCCCCccCCHHHHHHHHH-HcCCCCCCCCC
Confidence            579999999999999999999998 99999999884

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.7e-11  Score=48.20  Aligned_cols=35  Identities=23%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|+. +|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eof_A           10 EKPYECNECQKAFNTKSNLMVHQR-THTGESGPSSG   44 (44)
T ss_dssp             CCSEECTTTCCEESCHHHHHHHHH-HTTTSSCSCCC
T ss_pred             CCCeECCCCCcccCCHhHHHHHHH-HhCCCCCCCCC
Confidence            478999999999999999999998 99999999874

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.21  E-value=1.4e-11  Score=48.92  Aligned_cols=36  Identities=22%  Similarity=0.360  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2yto_A           10 EKPYKCSDCGKAFTRKSGLHIHQQ-SHTGERHSGPSS   45 (46)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-HHTCCCBTTTBC
T ss_pred             CCCEECcccCCccCCHhHHHHHHH-HcCCCCCCCCCC
Confidence            579999999999999999999998 999999999864

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.5e-11  Score=47.86  Aligned_cols=34  Identities=26%  Similarity=0.432  Sum_probs=31.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFAC   35 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   35 (82)
                      ++||.|..|++.|.....|..|+. +|.++++|.|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2ytb_A            9 EKPYRCDQCGKAFSQKGSLIVHIR-VHTGSGPSSG   42 (42)
T ss_dssp             CCSBCCTTTTCCBSSHHHHHTTGG-GTSCCSCCCC
T ss_pred             CCCeeCCCccchhCCHHHHHHHHH-HhCCCCCCCC
Confidence            579999999999999999999998 9999999876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.6e-11  Score=47.89  Aligned_cols=34  Identities=24%  Similarity=0.478  Sum_probs=31.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFAC   35 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   35 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2eos_A            9 EKPYPCEICGTRFRHLQTLKSHLR-IHTGSGPSSG   42 (42)
T ss_dssp             SCCBCCSSSCCCBSSHHHHHHHTT-TTSCCSSTTC
T ss_pred             CCCEECCCCCCccCCHHHHHHHHH-hcCCCCCCCC
Confidence            479999999999999999999998 9999999876

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.3e-11  Score=49.03  Aligned_cols=36  Identities=22%  Similarity=0.393  Sum_probs=33.3

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2enh_A           10 EKPYECDVCRKAFSHHASLTQHQR-VHSGEKPSGPSS   45 (46)
T ss_dssp             SSSCBCTTTCCBCSSSHHHHHHGG-GSCCSCCCCCCC
T ss_pred             CCCcCCCCcCchhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=1.3e-11  Score=49.08  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~~   45 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVLSAHLNQHLR-VHTQETLSGPSS   45 (46)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHHH-HHSSCCSSSCCC
T ss_pred             CCCeECcccChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.7e-11  Score=48.26  Aligned_cols=35  Identities=17%  Similarity=0.274  Sum_probs=32.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~   44 (44)
T 2eou_A           10 KTTSECQECGKIFRHSSLLIEHQA-LHAGESGPSSG   44 (44)
T ss_dssp             SCCCCCTTTCCCCSSHHHHHHHHH-HHTTSCCCCCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHH-HHCCCCCCCCC
Confidence            478999999999999999999998 99999999874

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.20  E-value=6.1e-12  Score=48.37  Aligned_cols=36  Identities=19%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             CCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeec
Q psy6273          28 TETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSC   65 (82)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C   65 (82)
                      .++++|.|..|++.|...+.|..|++.|+++  +||.+
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~H~~~--k~~~~   37 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNVHRRD--RARLR   37 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHTTCCS--CTTTT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHHcCCC--cccee
Confidence            4455666666666666666666666666666  55543

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.20  E-value=1.7e-11  Score=48.26  Aligned_cols=35  Identities=23%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQRNYLVQHER-THARKSGPSSG   44 (44)
T ss_dssp             CCSEECSSSSCEESSSHHHHHHHH-HCCCCCSSCCC
T ss_pred             CCCeECCCCCchhCCHHHHHHHhH-hcCCCCCCCCC
Confidence            579999999999999999999998 99999999874

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.20  E-value=2.4e-11  Score=48.21  Aligned_cols=36  Identities=25%  Similarity=0.461  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2eq3_A           10 EKPYECNQCGKAFSVRSSLTTHQA-IHTGKKPSGPSS   45 (46)
T ss_dssp             CCSSEETTTTEECSSHHHHHHHHT-TSCCCCCCCSCC
T ss_pred             CCCeECCCCChhhCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=1.6e-11  Score=52.69  Aligned_cols=40  Identities=13%  Similarity=0.222  Sum_probs=34.0

Q ss_pred             hCCCCCcccccc--chhhhcCcHHHHHHH-HHhcCCCCCeeecCc
Q psy6273          26 VHTETKSFACDQ--CVSYFKTNSALLQHK-RKMHDEFVNLFSCPL   67 (82)
Q Consensus        26 ~~~~~~~~~c~~--c~~~~~~~~~l~~h~-~~~~~~~~~~~~C~~   67 (82)
                      .+.+++||.|..  |++.|...++|..|+ +.|+++  +|+.|.+
T Consensus        21 ~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rriHTgE--KP~~~~~   63 (73)
T 1x3c_A           21 RYSPYRPYRCVHQGCFAAFTIQQNLILHYQAVHKSD--LPAFSAE   63 (73)
T ss_dssp             SSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSC--CCCCCCS
T ss_pred             cccCCCCeECCCCCcChhHcCHHHHHHHhhhhCCCC--CCccccc
Confidence            467889999964  999999999999997 689999  9998865

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.19  E-value=1.8e-11  Score=48.17  Aligned_cols=35  Identities=23%  Similarity=0.436  Sum_probs=32.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2emb_A           10 RKRYECSKCQATFNLRKHLIQHQK-THAAKSGPSSG   44 (44)
T ss_dssp             CSSEECTTTCCEESCHHHHHHHGG-GGCCCCCTTCC
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-HcCCCCCcCCC
Confidence            478999999999999999999998 99999999884

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.19  E-value=3.7e-12  Score=57.46  Aligned_cols=44  Identities=14%  Similarity=0.234  Sum_probs=39.9

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccccc
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEV   71 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~   71 (82)
                      +|.++++|.|..|++.|.....|..|++.|+++  +||.|..|.+.
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~Ht~e--kp~~C~~~~~~   62 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNIHNEE--FQKRAKRQERR   62 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHHHHHH--HHHHCCCCSCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHHhCCC--CCcccchhhhH
Confidence            688899999999999999999999999999999  99999877643

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.19  E-value=1.1e-11  Score=49.22  Aligned_cols=36  Identities=22%  Similarity=0.372  Sum_probs=33.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~~~~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~~C~~   45 (46)
T 2eor_A           10 EKPYNCEECGKAFIHDSQLQEHQR-IHTGEKPSGPSS   45 (46)
T ss_dssp             CCSEECTTTCCEESSHHHHHHHHH-HHHSCCCSSSTT
T ss_pred             CcCccCCCCCCCcCCHHHHHHHHH-hcCCCCCCCCCC
Confidence            479999999999999999999998 999999999864

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=99.18  E-value=2.2e-12  Score=54.57  Aligned_cols=44  Identities=20%  Similarity=0.446  Sum_probs=38.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHH
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSAL   48 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l   48 (82)
                      ++||.|+.|++.|.....|.   . .|.++++|.|..|++.|....++
T Consensus        12 ~k~~~C~~C~k~F~~~~~l~---~-~H~~~k~~~C~~C~k~f~~~~~~   55 (62)
T 1vd4_A           12 RASFKCPVCSSTFTDLEANQ---L-FDPMTGTFRCTFCHTEVEEDESA   55 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHH---H-EETTTTEEBCSSSCCBCEECTTC
T ss_pred             CCCccCCCCCchhccHHHhH---h-hcCCCCCEECCCCCCccccCccc
Confidence            47899999999999988886   5 89999999999999999876653

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.17  E-value=2.2e-11  Score=48.40  Aligned_cols=35  Identities=26%  Similarity=0.423  Sum_probs=32.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCC-CCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTE-TKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~-~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.+ +++|.|+
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~~C~   45 (46)
T 2eoy_A           10 EKCFKCNKCEKTFSCSKYLTQHER-IHTRGVKSGPSS   45 (46)
T ss_dssp             SCCEECSSSCCEESSSHHHHHHHT-TCCSCCTTSSSC
T ss_pred             CCCEECcCCCCcCCCHHHHHHHHH-HcCCCCCCCCCC
Confidence            479999999999999999999998 9999 9999886

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.16  E-value=5.9e-11  Score=50.99  Aligned_cols=37  Identities=22%  Similarity=0.294  Sum_probs=32.5

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      +|||.|.+  |+++|....+|..|++.+|++++|+.|..
T Consensus        25 EKPYkC~~~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           25 YRPYRCVHQGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             SCSCBCCSTTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCCeECCCCCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            68999975  99999999999999732899999998854

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.7e-11  Score=48.73  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=33.3

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQ   37 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~   37 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+.
T Consensus        10 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~C~~   45 (46)
T 2emz_A           10 ERPFKCNECGKGFGRRSHLAGHLR-LHSREKSSGPSS   45 (46)
T ss_dssp             CCSCCCSSSCCCCSSHHHHHHHHH-HHHHTTCCCSCC
T ss_pred             CCCeECCCCCcccCCHHHHHHHHH-HhCCCCCCCCCC
Confidence            579999999999999999999998 999999999864

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.15  E-value=1.3e-11  Score=48.08  Aligned_cols=34  Identities=26%  Similarity=0.494  Sum_probs=31.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFAC   35 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   35 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|
T Consensus         9 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~~~~~C   42 (42)
T 2en2_A            9 EKPYKCETCGARFVQVAHLRAHVL-IHTGSGPSSG   42 (42)
T ss_dssp             SCSEECTTTCCEESSHHHHHHHTH-HHHSCCSSCC
T ss_pred             CCCEeCCCcChhhCCHHHHHHHHH-HcCCCCCCCC
Confidence            579999999999999999999998 9999999876

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.13  E-value=6.7e-11  Score=46.52  Aligned_cols=34  Identities=18%  Similarity=0.252  Sum_probs=31.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFAC   35 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   35 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~k~~~~   43 (44)
T 2epv_A           10 EKPYECNECGKAFIWKSLLIVHER-THAGVSGPSS   43 (44)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHG-GGSSCSCCCC
T ss_pred             CcCeECCCCCcccCchHHHHHHHh-HhcCCCCCCC
Confidence            579999999999999999999998 9999999876

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=99.13  E-value=8e-11  Score=45.12  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=31.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCcccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFAC   35 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c   35 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.+
T Consensus         4 ~k~~~C~~C~k~f~~~~~L~~H~~-~H~~~k~~~~   37 (39)
T 1njq_A            4 PRSYTCSFCKREFRSAQALGGHMN-VHRRDRARLR   37 (39)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHH-TTCCSCTTTT
T ss_pred             CCceECCCCCcccCCHHHHHHHHH-HcCCCcccee
Confidence            579999999999999999999998 9999998865

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.13  E-value=5.9e-11  Score=43.99  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=17.3

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCcc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSF   33 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   33 (82)
                      +||.|..|++.|.....|..|+. +|.+++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~   31 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHIT-LHELLGEE   31 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHH-HHTTTCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHH-HhCCCCCC
Confidence            35555555555555555555555 55555544

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.13  E-value=4.4e-11  Score=44.66  Aligned_cols=32  Identities=22%  Similarity=0.557  Sum_probs=24.7

Q ss_pred             CCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        27 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      |.++++|.|..|++.|...+.|..|++.|+++
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~h~~~   33 (35)
T 2elx_A            2 SSGSSGYVCALCLKKFVSSIRLRSHIREVHGA   33 (35)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHHTSCT
T ss_pred             CCCCCCeECCCCcchhCCHHHHHHHHHHHcCC
Confidence            56677788888888888888888888777776

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.12  E-value=2.1e-11  Score=47.94  Aligned_cols=35  Identities=20%  Similarity=0.363  Sum_probs=32.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|.
T Consensus        10 ~~~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (44)
T 2eox_A           10 SKSYNCNECGKAFTRIFHLTRHQK-IHTRKSGPSSG   44 (44)
T ss_dssp             CCCEEETTTTEEESSSHHHHTTHH-HHCCCCCCSCC
T ss_pred             CCCeECcccCcccCCHHHHHHHHH-HhCCCCCCCCC
Confidence            479999999999999999999998 99999999873

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=5e-11  Score=45.12  Aligned_cols=33  Identities=21%  Similarity=0.491  Sum_probs=29.7

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|.++++|.|..|++.|...+.|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~h~~~   35 (37)
T 2elo_A            3 SGSSGRSYSCPVCEKSFSEDRLIKSHIKTNHPE   35 (37)
T ss_dssp             CCCCCCCCEETTTTEECSSHHHHHHHHHHHCSS
T ss_pred             CCCCCCCcCCCCCCCccCCHHHHHHHHHHHcCC
Confidence            678889999999999999999999999999887

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=99.11  E-value=7.7e-13  Score=54.48  Aligned_cols=41  Identities=20%  Similarity=0.381  Sum_probs=36.0

Q ss_pred             hhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          40 SYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        40 ~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +.|.....|..|++.|+++  +||.|..|++.|...+.|..|+
T Consensus         4 k~~~~~~~l~~h~~~H~~~--k~~~C~~C~k~f~~~~~L~~H~   44 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSE--QPATCPICYAVIRQSRNLRRHL   44 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSS--CCEECTTTCCEESSHHHHHHHH
T ss_pred             cccCCCcchhhHHHhcCCC--CCccCCCCCcccCCHHHHHHHH
Confidence            4566677788899999999  9999999999999999998874

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=99.10  E-value=4.9e-11  Score=44.60  Aligned_cols=32  Identities=25%  Similarity=0.535  Sum_probs=24.2

Q ss_pred             CCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        27 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      |.++++|.|..|++.|...+.|..|++.|+++
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   33 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHHcCCC
Confidence            56677777777777777777777777777766

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=99.09  E-value=2.4e-11  Score=46.02  Aligned_cols=36  Identities=22%  Similarity=0.348  Sum_probs=28.9

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      |++ +|.++++|.|+.|++.|.....|..|++.|+++
T Consensus         2 H~~-~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A            2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CSS-TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             CCC-cCCCCCCccCCCCCcccCcHHHHHHHHHHhccC
Confidence            444 678888888888888888888888888887763

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=99.09  E-value=2.1e-11  Score=48.41  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=32.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|+
T Consensus        10 ~k~~~C~~C~k~F~~~~~L~~H~~-~H~~~~~~~C~   44 (46)
T 2en3_A           10 EKPFQCKECGMNFSWSCSLFKHLR-SHERTDPSGPS   44 (46)
T ss_dssp             CCSEECSSSCCEESSSHHHHHHHH-HHHHSCCSSCS
T ss_pred             CCCeeCcccChhhCCHHHHHHHHH-HhCCCCCCCCC
Confidence            579999999999999999999998 99999999886

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=99.06  E-value=1.1e-10  Score=43.25  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=29.4

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeee
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFS   64 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~   64 (82)
                      ++|.|..|++.|...+.|..|++.|+++  +||.
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~H~~~--~~~~   32 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITLHELL--GEER   32 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHHHTTT--CCCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHHhCCC--CCCC
Confidence            4789999999999999999999999999  8874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.03  E-value=2e-10  Score=44.06  Aligned_cols=33  Identities=12%  Similarity=0.096  Sum_probs=26.3

Q ss_pred             hCCCCCcccccc--chhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      .+.+++||.|..  |++.|...+.|..|++.|+++
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            456788888875  888888888888888888765

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.01  E-value=3e-10  Score=42.60  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=28.3

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|.++++|.|..|++.|.....|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elt_A            3 SGSSGKPYKCPQCSYASAIKANLNVHLRKHTGE   35 (36)
T ss_dssp             CSCCCCSEECSSSSCEESSHHHHHHHHHHHTCC
T ss_pred             CCCCCCCCCCCCCCcccCCHHHHHHHHHHccCC
Confidence            577888899999999999889999998888876

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=99.00  E-value=2.1e-10  Score=43.60  Aligned_cols=35  Identities=29%  Similarity=0.475  Sum_probs=27.1

Q ss_pred             CCCCCccccc--cchhhhcCcHHHHHHHHHhcCCCCCee
Q psy6273          27 HTETKSFACD--QCVSYFKTNSALLQHKRKMHDEFVNLF   63 (82)
Q Consensus        27 ~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~   63 (82)
                      |.++++|.|.  .|++.|...+.|..|++.|+++  +||
T Consensus         1 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~~--k~~   37 (38)
T 1bhi_A            1 MSDDKPFLCTAPGCGQRFTNEDHLAVHKHKHEMT--LKF   37 (38)
T ss_dssp             CTTCCCEECCCTTTCCEESSHHHHHHHHHHHHTT--TTT
T ss_pred             CCCCcceECCCCCCCcccCCHHHHHHHHHHhCCC--CCC
Confidence            4567788887  5888888888888888888877  665

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=5.2e-10  Score=41.89  Aligned_cols=33  Identities=27%  Similarity=0.448  Sum_probs=27.8

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      .|.++++|.|..|++.|.....|..|++.|+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHHHSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHHhcCC
Confidence            467788888888988888888888888888876

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.98  E-value=7.6e-10  Score=41.13  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=28.0

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKS   32 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   32 (82)
                      ++||.|..|++.|.....|..|++ .|.++++
T Consensus         5 ~k~~~C~~C~k~f~~~~~L~~H~~-~h~~~kp   35 (35)
T 2elx_A            5 SSGYVCALCLKKFVSSIRLRSHIR-EVHGAAQ   35 (35)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HTSCTTC
T ss_pred             CCCeECCCCcchhCCHHHHHHHHH-HHcCCCC
Confidence            579999999999999999999998 8987753

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.98  E-value=1.9e-12  Score=58.38  Aligned_cols=52  Identities=19%  Similarity=0.406  Sum_probs=42.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      ++||.|..|++.|.....|..|++ +|.++++|.|..|.    ....|..|++.+.+
T Consensus        23 ~kpy~C~~C~k~F~~~~~L~~H~~-~Ht~ekp~~C~~~~----~~~~~~~~~~~~~~   74 (88)
T 1x6f_A           23 NSTYQCKHCDSKLQSTAELTSHLN-IHNEEFQKRAKRQE----RRKQLLSKQKYADG   74 (88)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHH-HHHHHHHHHCCCCS----CCCCCCCCCCCCCC
T ss_pred             CCCCcCCCCCCEeCCHHHHHHHHH-HhCCCCCcccchhh----hHHHHHhhhccccc
Confidence            478999999999999999999998 99999999997754    34455556666665

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=3.9e-10  Score=42.33  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=26.8

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|.++++|.|..|++.|...+.|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elq_A            3 SGSSGKPFKCSLCEYATRSKSNLKAHMNRHSTE   35 (36)
T ss_dssp             SSCCCCSEECSSSSCEESCHHHHHHHHHHSSTT
T ss_pred             CCCCCCCccCCCCCchhCCHHHHHHHHHHhccC
Confidence            567788888888888888888888888887765

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.98  E-value=4.6e-10  Score=42.37  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=29.3

Q ss_pred             hCCCCCccccccchhhhcCc-HHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTN-SALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~-~~l~~h~~~~~~~   58 (82)
                      +|.++++|.|..|++.|... +.|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~~L~~H~~~H~~~   36 (37)
T 2elp_A            3 SGSSGRAMKCPYCDFYFMKNGSDLQRHIWAHEGV   36 (37)
T ss_dssp             SCCCCCCEECSSSSCEECSSCHHHHHHHHHHHTC
T ss_pred             CCCCCCCeECCCCChhhccCHHHHHHHHHhcCCC
Confidence            57788899999999999998 9999999998876

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.96  E-value=4.6e-11  Score=43.96  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=24.0

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCcc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSF   33 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   33 (82)
                      +||.|..|++.|.....|..|++ +|.+++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~-~H~~~kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIK-TAFIVVAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTT-SSSSSSSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHH-HHccCCCC
Confidence            57788888888888888888877 77777664

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.95  E-value=9.8e-10  Score=40.89  Aligned_cols=31  Identities=29%  Similarity=0.471  Sum_probs=27.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKS   32 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   32 (82)
                      ++||.|..|++.|.....|..|++ +|.++++
T Consensus         5 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~~~   35 (35)
T 1srk_A            5 KRPFVCRICLSAFTTKANCARHLK-VHTDTLS   35 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHG-GGTSCCC
T ss_pred             CcCeeCCCCCcccCCHHHHHHHHH-HcCCCCC
Confidence            579999999999999999999998 8887654

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=7.2e-10  Score=41.78  Aligned_cols=31  Identities=19%  Similarity=0.409  Sum_probs=28.0

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCc
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKS   32 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~   32 (82)
                      ++||.|..|++.|.....|..|+. +|.+++|
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~h~~~kp   37 (37)
T 2elo_A            7 GRSYSCPVCEKSFSEDRLIKSHIK-TNHPEVS   37 (37)
T ss_dssp             CCCCEETTTTEECSSHHHHHHHHH-HHCSSCC
T ss_pred             CCCcCCCCCCCccCCHHHHHHHHH-HHcCCCC
Confidence            579999999999999999999998 8888754

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=4e-10  Score=42.29  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=24.5

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      .|.++++|.|..|++.|...+.|..|++.|+++
T Consensus         3 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2elv_A            3 SGSSGLLYDCHICERKFKNELDRDRHMLVHGDK   35 (36)
T ss_dssp             CSCCCCCEECSSSCCEESSHHHHHHHHTTTSTT
T ss_pred             CCCCCCCeECCCCCCccCCHHHHHHHHHHhcCC
Confidence            456677777777777777777777777777665

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=7.8e-10  Score=41.45  Aligned_cols=33  Identities=30%  Similarity=0.512  Sum_probs=26.9

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      .+.++++|.|..|++.|.....|..|++.|+++
T Consensus         3 ~~~~~k~~~C~~C~k~f~~~~~l~~H~~~H~~~   35 (36)
T 2els_A            3 SGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNE   35 (36)
T ss_dssp             TTSCCCCEECTTTCCEESSHHHHHHHHHHHCCC
T ss_pred             CCCCCCCEECCCCCceeCCHHHHHHHHHHhCCC
Confidence            466778888888888888888888888888765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.94  E-value=5.7e-11  Score=45.06  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=18.0

Q ss_pred             CCCCCccccccchhhhcCcHHHHHHH
Q psy6273          27 HTETKSFACDQCVSYFKTNSALLQHK   52 (82)
Q Consensus        27 ~~~~~~~~c~~c~~~~~~~~~l~~h~   52 (82)
                      +.+++||.|..|++.|...++|..|+
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcC
Confidence            45667777777777777777777665

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.93  E-value=1.6e-09  Score=38.71  Aligned_cols=29  Identities=21%  Similarity=0.432  Sum_probs=20.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|..|++.|.....|..|++ .|.++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLE-THDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-TTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-HhccC
Confidence            467777777777777777777776 66654

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.91  E-value=4.7e-10  Score=44.94  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=26.8

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHH-HhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKR-KMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~   58 (82)
                      +|.++++|.|..|++.|.....|..|++ .|+++
T Consensus         1 ~Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~H~~e   34 (48)
T 3iuf_A            1 GEDRDKPYACDICGKRYKNRPGLSYHYAHSHLAE   34 (48)
T ss_dssp             -CTTTSCEECTTTCCEESSHHHHHHHHHHSSCC-
T ss_pred             CCCCCcCEECCCcCcccCCHHHHHHHhhhhcCCC
Confidence            3677888889889988888888888988 88876

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=8.1e-10  Score=41.76  Aligned_cols=33  Identities=21%  Similarity=0.302  Sum_probs=25.5

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHH-HHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQH-KRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h-~~~~~~~   58 (82)
                      +|.++++|.|..|++.|...+.|..| ++.|+++
T Consensus         3 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A            3 SGSSGHLYYCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             SSSSSCEEECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ccCCCcCeECCCCCcccCCHHHHHHHHHHHccCc
Confidence            56777888888888888888888888 7777654

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.90  E-value=1.3e-09  Score=41.71  Aligned_cols=29  Identities=34%  Similarity=0.548  Sum_probs=26.4

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|..  |++.|.....|..|++ +|+++
T Consensus         7 ekp~~C~~~~C~k~F~~~~~L~~H~r-~Htg~   37 (38)
T 2eln_A            7 GILLKCPTDGCDYSTPDKYKLQAHLK-VHTAL   37 (38)
T ss_dssp             CCCEECSSSSCCCEESCHHHHHHHHH-HHSCC
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            58999986  9999999999999998 88875

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=2.2e-10  Score=50.13  Aligned_cols=54  Identities=20%  Similarity=0.297  Sum_probs=47.3

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++|+.|..|++.|. ...|..|+  .+.+++++.|+.|++.|. ...|..|++.+.++
T Consensus        15 ~r~~~C~~C~~~~~-~~~L~~H~--~~c~~~~~~C~~C~~~~~-~~~l~~H~~~c~~~   68 (75)
T 2d9k_A           15 LRLAVCQHCDLELS-ILKLKEHE--DYCGARTELCGNCGRNVL-VKDLKTHPEVCGRE   68 (75)
T ss_dssp             CCCEECSSSCCEEC-HHHHHHHH--HHHHHCEEECSSSCCEEE-TTGGGTHHHHBTTB
T ss_pred             CcccCCcccChHhh-HHHHHHHH--hHcCCCceEcccCCCcCc-HHHHHHHHHHccCC
Confidence            47899999999995 88999997  478899999999999877 58899999998876

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.87  E-value=2.5e-09  Score=37.73  Aligned_cols=27  Identities=30%  Similarity=0.668  Sum_probs=21.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHT   28 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~   28 (82)
                      ++||.|..|++.|.....|..|++ +|.
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~h~   27 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYR-VHT   27 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHT-TSC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHH-hcC
Confidence            578888888888888888888876 664

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=2.6e-09  Score=39.96  Aligned_cols=29  Identities=34%  Similarity=0.665  Sum_probs=26.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|..|++.|.....|..|++ +|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elv_A            7 GLLYDCHICERKFKNELDRDRHML-VHGDK   35 (36)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHT-TTSTT
T ss_pred             CCCeECCCCCCccCCHHHHHHHHH-HhcCC
Confidence            579999999999999999999998 88765

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.87  E-value=1.5e-09  Score=41.09  Aligned_cols=23  Identities=22%  Similarity=0.595  Sum_probs=21.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHH
Q psy6273           1 MTRYKCHACDVETKTRQALDNHI   23 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~   23 (82)
                      +|||.|.+|+++|....+|..|+
T Consensus         6 ekp~~C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A            6 PARFMCLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCCCEETTTTEECSCHHHHHHHH
T ss_pred             ccCeECCCCCCccCCHhHccCcC
Confidence            68999999999999999999997

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.87  E-value=3.4e-09  Score=39.64  Aligned_cols=29  Identities=24%  Similarity=0.592  Sum_probs=26.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|..|++.|.....|..|++ +|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elq_A            7 GKPFKCSLCEYATRSKSNLKAHMN-RHSTE   35 (36)
T ss_dssp             CCSEECSSSSCEESCHHHHHHHHH-HSSTT
T ss_pred             CCCccCCCCCchhCCHHHHHHHHH-HhccC
Confidence            579999999999999999999998 88765

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.85  E-value=3.4e-09  Score=37.10  Aligned_cols=26  Identities=19%  Similarity=0.539  Sum_probs=19.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      ++||.|..|++.|.....|..|++ +|
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~-~H   26 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLR-TH   26 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHH-HC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHH-Hc
Confidence            467788888888888887877776 55

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.85  E-value=3.3e-09  Score=37.58  Aligned_cols=27  Identities=22%  Similarity=0.500  Sum_probs=15.9

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      +||.|..|++.|.....|..|+. +|.+
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~   27 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYR-SHTN   27 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHH-HHSC
T ss_pred             CCeECCCCCcccCCHHHHHHHHH-HhcC
Confidence            35566666666666666666655 5544

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.84  E-value=2.4e-09  Score=37.58  Aligned_cols=26  Identities=19%  Similarity=0.523  Sum_probs=20.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      ++||.|..|++.|.....|..|++ +|
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~-~H   26 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMR-GH   26 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHT-TC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHH-hc
Confidence            478888888888888888888876 55

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=3.1e-09  Score=39.68  Aligned_cols=29  Identities=28%  Similarity=0.541  Sum_probs=26.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|..|++.|.....|..|++ +|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2elt_A            7 GKPYKCPQCSYASAIKANLNVHLR-KHTGE   35 (36)
T ss_dssp             CCSEECSSSSCEESSHHHHHHHHH-HHTCC
T ss_pred             CCCCCCCCCCcccCCHHHHHHHHH-HccCC
Confidence            579999999999999999999998 88765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.84  E-value=3.6e-09  Score=39.50  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=26.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|..|++.|.....|..|++ +|.++
T Consensus         7 ~~~~~C~~C~k~f~~~~~l~~H~~-~H~~e   35 (36)
T 2elr_A            7 GKTHLCDMCGKKFKSKGTLKSHKL-LHTAD   35 (36)
T ss_dssp             CSSCBCTTTCCBCSSHHHHHHHHH-HHSSC
T ss_pred             CCCeecCcCCCCcCchHHHHHHHH-HhcCC
Confidence            579999999999999999999998 88765

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.83  E-value=5.8e-09  Score=37.65  Aligned_cols=28  Identities=21%  Similarity=0.415  Sum_probs=20.3

Q ss_pred             CCcccC--cCCccccCHHHHHhHHHhhCCCC
Q psy6273           2 TRYKCH--ACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         2 k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      +||.|.  .|++.|.....|..|++ +|.++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHH-HhcCC
Confidence            467776  77777777777777776 66654

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.82  E-value=3.5e-09  Score=39.58  Aligned_cols=29  Identities=24%  Similarity=0.536  Sum_probs=26.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|..|++.|.....|..|++ +|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   35 (36)
T 2els_A            7 GKIFTCEYCNKVFKFKHSLQAHLR-IHTNE   35 (36)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHH-HHCCC
T ss_pred             CCCEECCCCCceeCCHHHHHHHHH-HhCCC
Confidence            579999999999999999999998 88765

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.82  E-value=3.9e-09  Score=38.39  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=17.2

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|.  .|++.|.....|..|++ +|.++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKK-SHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHG-GGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHH-HccCC
Confidence            3566666  56666666666666665 55543

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.82  E-value=5.4e-09  Score=39.25  Aligned_cols=29  Identities=21%  Similarity=0.383  Sum_probs=26.0

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|+.|++.|.....|..|++ .|.++
T Consensus         9 ~k~~~C~~C~k~f~~~~~l~~H~~-~H~~~   37 (37)
T 1p7a_A            9 IKPFQCPDCDRSFSRSDHLALHRK-RHMLV   37 (37)
T ss_dssp             SSSBCCTTTCCCBSSHHHHHHHHG-GGTCC
T ss_pred             CCCccCCCCCcccCcHHHHHHHHH-HhccC
Confidence            579999999999999999999998 88753

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.82  E-value=3.1e-09  Score=40.09  Aligned_cols=33  Identities=24%  Similarity=0.321  Sum_probs=27.2

Q ss_pred             hCCCCCccccc--cchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACD--QCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      .+.++++|.|.  .|++.|...+.|..|++.|+++
T Consensus         2 ~~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~H~~e   36 (37)
T 1va1_A            2 DPGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGE   36 (37)
T ss_dssp             CSSSCCCEECCSTTCCCEESCHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            36678888887  4888888888899998888876

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.82  E-value=2e-09  Score=38.22  Aligned_cols=27  Identities=26%  Similarity=0.557  Sum_probs=14.2

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      +||.|..|++.|.....|..|+. +|.+
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~H~~   27 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHIL-LHEN   27 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHT-GGGS
T ss_pred             CCccCCCCCchhCCHHHHHHHHH-HhcC
Confidence            34555555555555555555554 4443

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.79  E-value=2.9e-09  Score=40.30  Aligned_cols=32  Identities=22%  Similarity=0.350  Sum_probs=28.9

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCCCcc
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTETKSF   33 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~   33 (82)
                      ++||.|.  .|++.|.....|..|++ +|.++++|
T Consensus         4 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~~k~~   37 (38)
T 1bhi_A            4 DKPFLCTAPGCGQRFTNEDHLAVHKH-KHEMTLKF   37 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHH-HHHTTTTT
T ss_pred             CcceECCCCCCCcccCCHHHHHHHHH-HhCCCCCC
Confidence            5799999  59999999999999998 89888775

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.77  E-value=6e-09  Score=44.51  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=26.1

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      .+.++++|.|..|++.|.....|..|++.|+++
T Consensus         7 ~~~~ekpy~C~~CgK~F~~~s~L~~H~r~Htg~   39 (66)
T 2epp_A            7 GLREAGILPCGLCGKVFTDANRLRQHEAQHGVT   39 (66)
T ss_dssp             SCCCCCCCCCTTTCCCCSCHHHHHHHHHHHTTT
T ss_pred             CCCCccCcCCCCCCCccCCHHHHHhhhhhhCCC
Confidence            355677888888888888888888888888876

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.25  E-value=7.9e-10  Score=39.60  Aligned_cols=27  Identities=30%  Similarity=0.577  Sum_probs=15.3

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      +||.|..|++.|.....|..|++ +|.+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~-~h~~   28 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVR-IHTG   28 (30)
Confidence            45566666666665555555554 4443

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.76  E-value=3.8e-09  Score=37.38  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=11.4

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      ||.|..|++.|.....|..|++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~   23 (29)
T 2m0f_A            2 PLKCRECGKQFTTSGNLKRHLR   23 (29)
T ss_dssp             CEECTTTSCEESCHHHHHHHHH
T ss_pred             CccCCCCCCccCChhHHHHHHH
Confidence            4555555555555555555544

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.76  E-value=8.1e-09  Score=38.89  Aligned_cols=29  Identities=28%  Similarity=0.540  Sum_probs=25.9

Q ss_pred             CCCcccCcCCccccCHHHHHhH-HHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNH-ILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h-~~~~~~~~   30 (82)
                      ++||.|..|++.|.....|..| +. .|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~L~~H~~~-~H~~~   36 (37)
T 2elm_A            7 GHLYYCSQCHYSSITKNCLKRHVIQ-KHSNI   36 (37)
T ss_dssp             SCEEECSSSSCEEECHHHHHHHHHH-HTCCC
T ss_pred             CcCeECCCCCcccCCHHHHHHHHHH-HccCc
Confidence            5799999999999999999999 77 78754

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.75  E-value=5.4e-09  Score=37.22  Aligned_cols=27  Identities=22%  Similarity=0.453  Sum_probs=14.1

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|.|..|++.|...+.|..|++.|+++
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   28 (30)
T 1klr_A            2 TYQCQYCEFRSADSSNLKTHIKTKHSK   28 (30)
T ss_dssp             CCCCSSSSCCCSCSHHHHHHHHHHTSS
T ss_pred             CccCCCCCCccCCHHHHHHHHHHHccC
Confidence            345555555555555555555555444

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=98.74  E-value=1.2e-10  Score=42.81  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=26.1

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCee
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLF   63 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~   63 (82)
                      ++|.|..|++.|...+.|..|++.|+++  +||
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~H~~~--kp~   31 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKTAFIV--VAL   31 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTSSSSS--SSC
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHHHccC--CCC
Confidence            3688889999998888888898888888  775

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.73  E-value=5.8e-09  Score=37.13  Aligned_cols=29  Identities=21%  Similarity=0.526  Sum_probs=25.1

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +++|.|..|++.|.....|..|++.|+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLETHDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHTTCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHHhccC
Confidence            36789999999999999999999988876

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.73  E-value=6.9e-09  Score=37.03  Aligned_cols=28  Identities=25%  Similarity=0.506  Sum_probs=18.1

Q ss_pred             CCcccCcCCccccCHHHHHhH-HHhhCCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNH-ILCVHTET   30 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h-~~~~~~~~   30 (82)
                      +||.|..|++.|.....|..| +. +|.++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~-~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQK-IHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTT-TSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHH-HccCC
Confidence            466777777777777777777 44 55543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=98.73  E-value=5.9e-09  Score=36.92  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=24.9

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++|.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILLHENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTGGGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHHhcCC
Confidence            4688999999999999999999998876

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.73  E-value=9.8e-09  Score=36.28  Aligned_cols=28  Identities=32%  Similarity=0.674  Sum_probs=25.2

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++|.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHHHSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHHhcCC
Confidence            3689999999999999999999999876

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=98.73  E-value=1.1e-08  Score=36.31  Aligned_cols=29  Identities=21%  Similarity=0.574  Sum_probs=25.5

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      +||.|..|++.|.....|..|+. +|.++.
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~-~h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIK-TKHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHH-HHTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHH-HHccCC
Confidence            58999999999999999999998 777654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.72  E-value=1e-08  Score=43.80  Aligned_cols=30  Identities=20%  Similarity=0.225  Sum_probs=27.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      +|||.|..|++.|.....|..|++ +|.++.
T Consensus        11 ekpy~C~~CgK~F~~~s~L~~H~r-~Htg~~   40 (66)
T 2epp_A           11 AGILPCGLCGKVFTDANRLRQHEA-QHGVTS   40 (66)
T ss_dssp             CCCCCCTTTCCCCSCHHHHHHHHH-HHTTTS
T ss_pred             ccCcCCCCCCCccCCHHHHHhhhh-hhCCCc
Confidence            589999999999999999999998 898764

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=1.3e-09  Score=38.82  Aligned_cols=26  Identities=23%  Similarity=0.391  Sum_probs=13.7

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      ||.|..|++.|.....|..|+. +|.+
T Consensus         2 ~~~C~~C~k~f~~~~~l~~H~~-~H~~   27 (29)
T 2lvt_A            2 PCQCVMCGKAFTQASSLIAHVR-QHTG   27 (29)
Confidence            4555555555555555555554 4443

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.72  E-value=3.3e-09  Score=37.50  Aligned_cols=27  Identities=19%  Similarity=0.361  Sum_probs=14.9

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|.|..|++.|.....|..|++.|+++
T Consensus         2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~   28 (29)
T 2m0e_A            2 EHKCPHCDKKFNQVGNLKAHLKIHIAD   28 (29)
T ss_dssp             CCCCSSCCCCCCTTTHHHHHHHHHHSC
T ss_pred             CCcCCCCCcccCCHHHHHHHHHHhccC
Confidence            455555555555555555555555544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.72  E-value=1.3e-08  Score=35.37  Aligned_cols=26  Identities=35%  Similarity=0.646  Sum_probs=18.0

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      ||.|..|++.|.....|..|++ +|.+
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~-~h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQR-VHKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGG-GTCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHH-HcCC
Confidence            5677777777777777777776 6654

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.71  E-value=4.3e-09  Score=39.56  Aligned_cols=29  Identities=28%  Similarity=0.425  Sum_probs=26.0

Q ss_pred             CCCcccCcCCccccCH-HHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTR-QALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~-~~l~~h~~~~~~~~   30 (82)
                      ++||.|..|++.|... ..|..|+. +|.++
T Consensus         7 ~k~~~C~~C~k~f~~~~~~L~~H~~-~H~~~   36 (37)
T 2elp_A            7 GRAMKCPYCDFYFMKNGSDLQRHIW-AHEGV   36 (37)
T ss_dssp             CCCEECSSSSCEECSSCHHHHHHHH-HHHTC
T ss_pred             CCCeECCCCChhhccCHHHHHHHHH-hcCCC
Confidence            5799999999999999 99999998 88764

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.71  E-value=1.3e-09  Score=43.58  Aligned_cols=26  Identities=19%  Similarity=0.709  Sum_probs=23.4

Q ss_pred             hcCCCCCeeecCcccccccCcccccccC
Q psy6273          55 MHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        55 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      |+++  +||.|..|++.|.....|.+|+
T Consensus         2 Ht~~--kp~~C~~C~k~F~~~~~L~~H~   27 (48)
T 3iuf_A            2 EDRD--KPYACDICGKRYKNRPGLSYHY   27 (48)
T ss_dssp             CTTT--SCEECTTTCCEESSHHHHHHHH
T ss_pred             CCCC--cCEECCCcCcccCCHHHHHHHh
Confidence            6777  9999999999999999998874

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.70  E-value=1.1e-09  Score=43.65  Aligned_cols=33  Identities=21%  Similarity=0.426  Sum_probs=27.8

Q ss_pred             hCCCCCccccc--cchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACD--QCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      .|.++++|.|.  .|++.|...+.|..|++.|+++
T Consensus        12 ~H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~H~~e   46 (47)
T 1ncs_A           12 KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             ccCCCCCeECCCCCCCCccCCHHHHHHHHHHccCC
Confidence            67788888885  6999998888899998888876

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.70  E-value=9e-09  Score=36.34  Aligned_cols=28  Identities=29%  Similarity=0.514  Sum_probs=25.1

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++|.|..|++.|.....|..|++.|+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRIHSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHHhcCC
Confidence            4689999999999999999999999876

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.69  E-value=1.2e-08  Score=36.97  Aligned_cols=29  Identities=28%  Similarity=0.730  Sum_probs=25.6

Q ss_pred             CCccccc--cchhhhcCcHHHHHHHHHhcCC
Q psy6273          30 TKSFACD--QCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        30 ~~~~~c~--~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +++|.|.  .|++.|...+.|..|++.|+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHHccCC
Confidence            3678998  8999999999999999999876

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.69  E-value=1.1e-08  Score=36.11  Aligned_cols=28  Identities=25%  Similarity=0.495  Sum_probs=23.9

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      +||.|..|++.|.....|..|+. +|.++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~-~h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLK-IHIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHH-HHHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHH-HhccC
Confidence            68899999999999999999987 77654

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.66  E-value=1.2e-08  Score=35.60  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=16.6

Q ss_pred             CccccccchhhhcCcHHHHHHHHHh
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~   55 (82)
                      ++|.|..|++.|...+.|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvh_A            2 KPFSCSLCPQRSRDFSAMTKHLRTH   26 (27)
T ss_dssp             CCEECSSSSCEESSHHHHHHHHHHC
T ss_pred             cCccCCCcChhhCCHHHHHHHHHHc
Confidence            4566666777776666666666654

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.64  E-value=8.8e-09  Score=36.21  Aligned_cols=26  Identities=19%  Similarity=0.485  Sum_probs=18.4

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ++|.|..|++.|...+.|..|++.|+
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~   27 (28)
T 2kvf_A            2 RPYSCSVCGKRFSLKHQMETHYRVHT   27 (28)
T ss_dssp             CSEECSSSCCEESCHHHHHHHHTTSC
T ss_pred             cCccCCCCCcccCCHHHHHHHHHhcC
Confidence            46777777777777777777776654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=3.9e-09  Score=37.50  Aligned_cols=28  Identities=32%  Similarity=0.543  Sum_probs=22.9

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++|.|..|++.|...+.|..|++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQHTGE   28 (29)
Confidence            3678888888888888888888888765

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=98.06  E-value=3.9e-09  Score=37.67  Aligned_cols=28  Identities=32%  Similarity=0.562  Sum_probs=22.2

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++|.|..|++.|...+.|..|++.|+++
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            2 KPYVCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4678888888888888888888877765

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=98.62  E-value=1.5e-08  Score=36.48  Aligned_cols=28  Identities=32%  Similarity=0.643  Sum_probs=24.7

Q ss_pred             Cccccc--cchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACD--QCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~--~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++|.|.  .|++.|...+.|..|++.|+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHHhcCC
Confidence            468887  8999999999999999999876

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.05  E-value=4.2e-09  Score=36.52  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=18.0

Q ss_pred             CeeecCcccccccCcccccccC
Q psy6273          61 NLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      +||.|..|++.|...+.|..|+
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~   22 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHI   22 (26)
Confidence            4788888888888888888774

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=98.61  E-value=2e-08  Score=37.75  Aligned_cols=29  Identities=24%  Similarity=0.383  Sum_probs=25.8

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ++||.|.  .|++.|.....|..|++ +|.++
T Consensus         6 ~k~~~C~~~~C~k~f~~~~~L~~H~~-~H~~e   36 (37)
T 1va1_A            6 KKQHICHIQGCGKVYGKTSHLRAHLR-WHTGE   36 (37)
T ss_dssp             CCCEECCSTTCCCEESCHHHHHHHHH-HHHTT
T ss_pred             CCCCCCCCCCCCCccCCHHHHHHHHH-hcCCC
Confidence            5799998  49999999999999998 88765

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=98.03  E-value=4.8e-09  Score=36.36  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=14.4

Q ss_pred             CCcccCcCCccccCHHHHHhHHH
Q psy6273           2 TRYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      +||.|..|++.|.....|..|++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIR   23 (26)
Confidence            45666666666666666666654

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.60  E-value=1e-08  Score=35.87  Aligned_cols=25  Identities=16%  Similarity=0.368  Sum_probs=14.8

Q ss_pred             CccccccchhhhcCcHHHHHHHHHh
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~   55 (82)
                      ++|.|..|++.|...+.|..|++.|
T Consensus         2 k~~~C~~C~k~f~~~~~l~~H~~~H   26 (27)
T 2kvg_A            2 APYRCPLCRAGCPSLASMQAHMRGH   26 (27)
T ss_dssp             CTEEETTTTEEESCHHHHHHHHTTC
T ss_pred             cCcCCCCCCcccCCHHHHHHHHHhc
Confidence            4556666666666666666665544

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=98.59  E-value=1.3e-08  Score=35.44  Aligned_cols=27  Identities=30%  Similarity=0.609  Sum_probs=21.3

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|.|..|++.|...+.|..|++.|+++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             CccCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            477888999998888898888887753

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.53  E-value=7.8e-08  Score=33.79  Aligned_cols=26  Identities=35%  Similarity=0.703  Sum_probs=18.5

Q ss_pred             CCcccC--cCCccccCHHHHHhHHHhhCC
Q psy6273           2 TRYKCH--ACDVETKTRQALDNHILCVHT   28 (82)
Q Consensus         2 k~~~c~--~c~~~~~~~~~l~~h~~~~~~   28 (82)
                      +||.|.  .|++.|.....|..|++ +|.
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~-~H~   28 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKK-IHT   28 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHG-GGT
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHH-HhC
Confidence            467777  77777777777777776 554

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.51  E-value=3.3e-08  Score=35.13  Aligned_cols=28  Identities=25%  Similarity=0.609  Sum_probs=23.1

Q ss_pred             CccccccchhhhcCcHHHHHH-HHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQH-KRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h-~~~~~~~   58 (82)
                      ++|.|..|++.|...+.|..| ++.|+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKIHSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTTSCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHHccCC
Confidence            368899999999999999998 6777765

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=98.46  E-value=1.6e-09  Score=43.12  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=25.2

Q ss_pred             HHHHhcCCCCCeeecC--cccccccCcccccccC
Q psy6273          51 HKRKMHDEFVNLFSCP--LCGEVFRSHQGYKIHH   82 (82)
Q Consensus        51 h~~~~~~~~~~~~~C~--~C~~~f~~~~~l~~H~   82 (82)
                      +...|.++  +||.|.  .|++.|...+.|..|+
T Consensus         9 ~~~~H~~~--k~~~C~~~~C~k~F~~~~~L~~H~   40 (47)
T 1ncs_A            9 KYVKEMPD--KTFECLFPGCTKTFKRRYNIRSHI   40 (47)
T ss_dssp             GSCEEETT--TEEECCCTTCCCEECSSSSHHHHH
T ss_pred             HHhccCCC--CCeECCCCCCCCccCCHHHHHHHH
Confidence            34458888  999995  7999999999998874

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=98.35  E-value=1.5e-07  Score=33.02  Aligned_cols=26  Identities=23%  Similarity=0.529  Sum_probs=20.3

Q ss_pred             ccccc--cchhhhcCcHHHHHHHHHhcC
Q psy6273          32 SFACD--QCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        32 ~~~c~--~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      +|.|.  .|++.|...+.|..|++.|++
T Consensus         2 ~~~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            2 VYVCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             CEEECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCCCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            57787  888888888888888877753

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=98.24  E-value=5.8e-06  Score=34.94  Aligned_cols=49  Identities=18%  Similarity=0.390  Sum_probs=34.2

Q ss_pred             CcCCccccCHHHHHhHHHhhCCCCC------ccccc--cchhhhcCcHHHHHHHHHh
Q psy6273           7 HACDVETKTRQALDNHILCVHTETK------SFACD--QCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus         7 ~~c~~~~~~~~~l~~h~~~~~~~~~------~~~c~--~c~~~~~~~~~l~~h~~~~   55 (82)
                      ..|++.|.+...|..|+...|.+.+      +|.|.  .|+..+.....|..|++..
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hir~~   63 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHINAQ   63 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhcccc
Confidence            4588888888888888743676554      56674  6777776667777777653

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=97.85  E-value=6e-06  Score=34.90  Aligned_cols=48  Identities=13%  Similarity=0.112  Sum_probs=37.6

Q ss_pred             cccchhhhcCcHHHHHHHH-HhcCCC----CCeeecC--cccccccCcccccccC
Q psy6273          35 CDQCVSYFKTNSALLQHKR-KMHDEF----VNLFSCP--LCGEVFRSHQGYKIHH   82 (82)
Q Consensus        35 c~~c~~~~~~~~~l~~h~~-~~~~~~----~~~~~C~--~C~~~f~~~~~l~~H~   82 (82)
                      ...|++.|.+...|..|+. .|.+..    ..+|.|.  .|++.+.....|..|+
T Consensus         6 W~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~~~~~~~L~~Hi   60 (64)
T 1zw8_A            6 WKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASIVNHI   60 (64)
T ss_dssp             CTTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCEESSHHHHHHHH
T ss_pred             eCCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCCCCChHHHHhhc
Confidence            3569999999999999985 677652    1289996  6999888877887764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.77  E-value=2.6e-06  Score=40.45  Aligned_cols=27  Identities=22%  Similarity=0.479  Sum_probs=20.8

Q ss_pred             HhcCCCCCeeecCcccccccCcccccccC
Q psy6273          54 KMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        54 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      .++|+  +||.|..|++.|...+.|..|+
T Consensus        44 d~tGe--kpfyC~~C~K~F~~~~~L~~H~   70 (124)
T 1zr9_A           44 DLPGG--GLHRCLACARYFIDSTNLKTHF   70 (124)
T ss_dssp             SSGGG--GCSEETTTTEECSSHHHHHHHT
T ss_pred             cCCCC--cceEcccCcchhCCHHHHHHHH
Confidence            46677  7888888888888888887764

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=97.45  E-value=1.2e-05  Score=38.18  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHh
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~   55 (82)
                      .++|+++|.|..|++.|.+.+.|..|+++.
T Consensus        44 d~tGekpfyC~~C~K~F~~~~~L~~H~rsK   73 (124)
T 1zr9_A           44 DLPGGGLHRCLACARYFIDSTNLKTHFRSK   73 (124)
T ss_dssp             SSGGGGCSEETTTTEECSSHHHHHHHTTCH
T ss_pred             cCCCCcceEcccCcchhCCHHHHHHHHhhh
Confidence            566788999999999999999999998653

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=97.27  E-value=0.00052  Score=32.76  Aligned_cols=74  Identities=16%  Similarity=0.301  Sum_probs=41.1

Q ss_pred             CCcccCcCCccccCHHHHHhHHHh-hCCCC-Ccccccc------chhhhcCcHHHHHHHHHhcCCCCCeeecCccccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILC-VHTET-KSFACDQ------CVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFR   73 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~-~~~~~-~~~~c~~------c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~   73 (82)
                      +++.|..|+..|.+...+..|... .|... +.+.+..      -+..+....    +.....+.  ..|-|..|...|.
T Consensus        31 ~~~~C~~C~v~~~S~s~~~~H~~gkkH~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~C~~C~~~f~  104 (127)
T 1zu1_A           31 SDTQCKVCSAVLISESQKLAHYQSRKHANKVRRYMAINQGEDSVPAKKFKAAP----AEISDGED--RSKCCPVCNMTFS  104 (127)
T ss_dssp             CSSEETTTTEECCSHHHHHHHHHCHHHHHHHHHHHHHTTCCCCCSCCCCSCCS----SCCSSCCC--TTTEETTTTEECS
T ss_pred             CCCcCcCCCCEeCCHHHHHHHHCcHHHHHHHHHHhcccCcccCCCCCccCCCc----cccccCCC--CCeEcCCCCCEeC
Confidence            568899999999999999988731 22110 0111100      001111000    00112333  6788888888888


Q ss_pred             Cccccccc
Q psy6273          74 SHQGYKIH   81 (82)
Q Consensus        74 ~~~~l~~H   81 (82)
                      ....+..|
T Consensus       105 s~~~~~~H  112 (127)
T 1zu1_A          105 SPVVAESH  112 (127)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHHH
Confidence            87777665

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=0.00027  Score=27.83  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=23.7

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ..+.|+.|+..|.....|..||....++
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~HmkycCp~   38 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCYCCPE   38 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHHHCTT
T ss_pred             CceeCCcccccccchHHHHhhhhhcCcc
Confidence            5678999999999999999999877665

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.83  E-value=0.0013  Score=25.87  Aligned_cols=22  Identities=27%  Similarity=0.626  Sum_probs=20.6

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      ++.|+-|+..|.....|..|++
T Consensus        12 ~~~CPrCn~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           12 RKICPRCNAQFRVTEALRGHMC   33 (49)
T ss_dssp             CCCCTTTCCCCSSHHHHHHHHH
T ss_pred             ceeCCcccccccchHHHHhhhh
Confidence            5789999999999999999987

>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2

Probab=96.71  E-value=0.0017  Score=28.39  Aligned_cols=38  Identities=26%  Similarity=0.558  Sum_probs=18.2

Q ss_pred             cccccchhhhcCcHHHHHHHHHhcCCCCCeeecCccccccc
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFR   73 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~   73 (82)
                      |.|..|+..+.. ..+..|.....+-  ..|.|..|+..|.
T Consensus        11 F~C~~Cgd~lKK-~kv~~H~~~Cr~~--~~~SCIDC~~~F~   48 (79)
T 1wjv_A           11 FTCNACGESVKK-IQVEKHVSNCRNC--ECLSCIDCGKDFW   48 (79)
T ss_dssp             EEESSSCCEEET-THHHHHHHHCTTC--CEEEETTTTEEEE
T ss_pred             EEcCCCCCeeec-ccchhHHhhCCCC--CcEEecccCCeeC
Confidence            455555544332 3345554333332  3456666665554

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=96.66  E-value=0.00078  Score=32.16  Aligned_cols=23  Identities=22%  Similarity=0.391  Sum_probs=20.2

Q ss_pred             CCccccccchhhhcCcHHHHHHH
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHK   52 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~   52 (82)
                      .+++.|..|+..|.+.+.+..|.
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~   52 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHY   52 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHH
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHH
Confidence            45789999999999999998887

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=95.66  E-value=0.018  Score=21.09  Aligned_cols=25  Identities=24%  Similarity=0.432  Sum_probs=17.9

Q ss_pred             cccCcCCccccCHHHHHhHHHhhCC
Q psy6273           4 YKCHACDVETKTRQALDNHILCVHT   28 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~~~   28 (82)
                      |.|+.|.+.+.+...|..|....|.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~H~   30 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAVHD   30 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHHTS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhccc
Confidence            6677777777777777777664554

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.63  E-value=0.013  Score=29.05  Aligned_cols=62  Identities=23%  Similarity=0.350  Sum_probs=42.6

Q ss_pred             cCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCc
Q psy6273           8 ACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSH   75 (82)
Q Consensus         8 ~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~   75 (82)
                      -|+.... ...+..|..  .=...+..|+.|+..+ ....|..|+......  ++..|+.|+..+...
T Consensus        89 GC~~~~~-~~~l~~H~~--~C~~~~v~C~~C~~~~-~r~~l~~H~~~~C~~--r~~~C~~C~~~~~~~  150 (170)
T 3hcs_A           89 GCLHKME-LRHLEDHQA--HCEFALMDCPQCQRPF-QKFHINIHILKDCPR--RQVSCDNCAASMAFE  150 (170)
T ss_dssp             TCCCEEE-GGGHHHHHT--TCTTSEEECTTTCCEE-EGGGHHHHHHHTCTT--CEEECTTTCCEEEGG
T ss_pred             CCCceec-HhHHHHHHh--cCCceeeECCCCChHH-HHHHHHHHhhhhCCC--CCeECCCCCCccCHH
Confidence            4665544 345667753  2334567888888776 456688898877777  889999998876543

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=94.19  E-value=0.049  Score=27.00  Aligned_cols=32  Identities=25%  Similarity=0.557  Sum_probs=15.8

Q ss_pred             cchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccc
Q psy6273          37 QCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVF   72 (82)
Q Consensus        37 ~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f   72 (82)
                      .|+.... ...+..|.. .-.-  .+..|+.|+..+
T Consensus        89 GC~~~~~-~~~l~~H~~-~C~~--~~v~C~~C~~~~  120 (170)
T 3hcs_A           89 GCLHKME-LRHLEDHQA-HCEF--ALMDCPQCQRPF  120 (170)
T ss_dssp             TCCCEEE-GGGHHHHHT-TCTT--SEEECTTTCCEE
T ss_pred             CCCceec-HhHHHHHHh-cCCc--eeeECCCCChHH
Confidence            4544332 334555542 2223  566777776655

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=94.18  E-value=0.063  Score=19.85  Aligned_cols=22  Identities=27%  Similarity=0.410  Sum_probs=12.0

Q ss_pred             cccccchhhhcCcHHHHHHHHH
Q psy6273          33 FACDQCVSYFKTNSALLQHKRK   54 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~   54 (82)
                      ..|..|+..|....++..|.+.
T Consensus         9 ~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            9 KYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             SEETTTTEECSSHHHHHHHHHH
T ss_pred             CeeccccceehhhHHHhhhhee
Confidence            4555555555555555555443

>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A

Probab=93.93  E-value=0.088  Score=18.87  Aligned_cols=23  Identities=26%  Similarity=0.450  Sum_probs=18.9

Q ss_pred             ccCcCCccccCHHHHHhHHHhhC
Q psy6273           5 KCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         5 ~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      .|..|.+.++...+|..|++-.|
T Consensus        11 hcrfckkkysdvknlikhire~h   33 (37)
T 2elu_A           11 HCRFCKKKYSDVKNLIKHIRDAH   33 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            48889999999999999987444

>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82

Probab=93.73  E-value=0.018  Score=26.59  Aligned_cols=32  Identities=25%  Similarity=0.478  Sum_probs=20.4

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSH   75 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~   75 (82)
                      .++.|..||..|..           ...  +|-.|+.|+......
T Consensus        66 ~p~~C~~CG~~F~~-----------~~~--kPsrCP~CkSe~Ie~   97 (105)
T 2gmg_A           66 KPAQCRKCGFVFKA-----------EIN--IPSRCPKCKSEWIEE   97 (105)
T ss_dssp             CCCBBTTTCCBCCC-----------CSS--CCSSCSSSCCCCBCC
T ss_pred             ECcChhhCcCeecc-----------cCC--CCCCCcCCCCCccCC
Confidence            56788888888711           112  678888887654433

>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A

Probab=92.75  E-value=0.032  Score=28.77  Aligned_cols=25  Identities=32%  Similarity=0.659  Sum_probs=19.5

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      .-|.|..||..+.             |.  .|+.|+.|+-
T Consensus       170 ~~~~C~~CG~i~~-------------g~--~p~~CP~C~~  194 (202)
T 1yuz_A          170 KFHLCPICGYIHK-------------GE--DFEKCPICFR  194 (202)
T ss_dssp             CEEECSSSCCEEE-------------SS--CCSBCTTTCC
T ss_pred             cEEEECCCCCEEc-------------Cc--CCCCCCCCCC
Confidence            4689999998764             24  7899999974

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=91.82  E-value=0.16  Score=17.69  Aligned_cols=21  Identities=19%  Similarity=0.621  Sum_probs=15.4

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      +.|+.|.....+...|..|..
T Consensus         4 ~~CpvCk~q~Pd~kt~~~H~e   24 (28)
T 2jvx_A            4 FCCPKCQYQAPDMDTLQIHVM   24 (28)
T ss_dssp             EECTTSSCEESSHHHHHHHHH
T ss_pred             ccCccccccCcChHHHHHHHH
Confidence            567888877777777777753

>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A

Probab=90.93  E-value=0.0047  Score=37.08  Aligned_cols=56  Identities=18%  Similarity=0.366  Sum_probs=35.1

Q ss_pred             cCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273           6 CHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus         6 c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      |..||-.|+....|---+.++.-... -.|+.|...+.++.+    .|+|.    +|-.|+.||=
T Consensus        42 Ct~CGPR~tii~~lPYDR~~TsM~~F-~mC~~C~~EY~dp~d----RRfHA----qp~aCp~CGP   97 (657)
T 3ttc_A           42 CTHCGPRFTIIRAMPYDRPFTVMAAF-PLCPACDKEYRDPLD----RRFHA----QPVACPECGP   97 (657)
T ss_dssp             BTTBBCSGGGBSSSSCSGGGBGGGGS-CCCHHHHHHHHCTTS----TTTTC----TTCCCTTTSC
T ss_pred             CcCCCchHHhcccCCCCCCCCcccCC-CCChHHHHHhCCCCC----CcCcC----CCCcCcccCc
Confidence            88899887765443322211211222 268889888888765    35666    6889999984

>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A

Probab=90.30  E-value=0.08  Score=26.57  Aligned_cols=25  Identities=36%  Similarity=0.729  Sum_probs=19.2

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      .-|.|+.||..+.             ++  .|-.||.||-
T Consensus       137 ~~~~C~~CG~i~~-------------~~--~p~~CP~Cg~  161 (170)
T 3pwf_A          137 KVYICPICGYTAV-------------DE--APEYCPVCGA  161 (170)
T ss_dssp             CEEECTTTCCEEE-------------SC--CCSBCTTTCC
T ss_pred             CeeEeCCCCCeeC-------------CC--CCCCCCCCCC
Confidence            4589999998764             24  6779999983

>2yrk_A Zinc finger homeobox protein 4; structure genomics, ZF-C2H2 domain, ZFH-4, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.37.1.4

Probab=90.23  E-value=0.039  Score=22.32  Aligned_cols=19  Identities=26%  Similarity=0.634  Sum_probs=12.9

Q ss_pred             eecCcccccccCccccccc
Q psy6273          63 FSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        63 ~~C~~C~~~f~~~~~l~~H   81 (82)
                      -.|..|+..|....+++.|
T Consensus        14 ~eC~lC~vkYs~r~slqDH   32 (55)
T 2yrk_A           14 PECTLCGVKYSARLSIRDH   32 (55)
T ss_dssp             SCCTTTTCCCCSSSCHHHH
T ss_pred             ccccccCcccccccchhhh
Confidence            5677777777766666555

>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}

Probab=90.01  E-value=0.0064  Score=37.15  Aligned_cols=56  Identities=21%  Similarity=0.417  Sum_probs=35.1

Q ss_pred             cCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273           6 CHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus         6 c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      |..||-.|+....|---+.++.-..- -.|+.|...+.++.+    .++|.    .|-.|+.||=
T Consensus       131 Ct~CGPR~tii~~lPYDR~~TsM~~F-~mC~~C~~EY~dp~d----RRfhA----qp~aC~~CGP  186 (772)
T 4g9i_A          131 CTNCGPRFTIIEDLPYDRENTTMKEF-PMCDFCRSEYEDPLN----RRYHA----EPTACPVCGP  186 (772)
T ss_dssp             CTTSSCCGGGCCSSSCCGGGSGGGGS-CCCHHHHHHHHCSSS----TTTTC----TTCCCTTTSC
T ss_pred             CCCCCchhhhhhcCCCCCCCCcCCCC-CCChhHHHHhCCCCC----CCCcC----CCCCCccCCc
Confidence            88899887765443322211111122 268889888888776    24565    6889999983

>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A

Probab=89.78  E-value=0.0071  Score=36.92  Aligned_cols=56  Identities=14%  Similarity=0.330  Sum_probs=34.4

Q ss_pred             cCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273           6 CHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus         6 c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      |..||-.|+....|---..++.-... -.|+.|...+.++.+    .++|.    .|-.|+.||=
T Consensus       136 Ct~CGPR~tii~~lPYDR~~TsM~~F-~mC~~C~~EY~dp~~----RRfhA----qp~aC~~CGP  191 (761)
T 3vth_A          136 CTNCGPRFSIIEDIPYDRAKTSMKVF-PMCEKCSREYHDPHD----RRFHA----QPVACFDCGP  191 (761)
T ss_dssp             BTTBBCSGGGBCSSSCCGGGBGGGGS-CCCHHHHHHHTCTTS----TTTTC----TTCCCTTTSC
T ss_pred             CCCCCcchhhhccCCCCCCCCccccC-CCCHHHHHHhcCccc----ccccC----CCCcCCccCC
Confidence            88888877754433322211111222 268888888888765    35565    5789999984

>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A

Probab=88.02  E-value=0.085  Score=26.92  Aligned_cols=25  Identities=20%  Similarity=0.555  Sum_probs=18.5

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      .|.|..||..+...            +  .|-.|+.||.
T Consensus       155 ~~~C~~CG~~~~g~------------~--~p~~CP~C~~  179 (191)
T 1lko_A          155 KWRCRNCGYVHEGT------------G--APELCPACAH  179 (191)
T ss_dssp             EEEETTTCCEEEEE------------E--CCSBCTTTCC
T ss_pred             eEEECCCCCEeeCC------------C--CCCCCCCCcC
Confidence            58899999876521            3  5779999974

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=87.36  E-value=0.24  Score=22.11  Aligned_cols=25  Identities=28%  Similarity=0.526  Sum_probs=16.6

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ....|-.||+.|..   |.+|+..++|.
T Consensus        20 d~iiClecGK~fK~---LkRHL~~~hgl   44 (87)
T 2jsp_A           20 DHIVCLECGGSFKS---LKRHLTTHHSM   44 (87)
T ss_dssp             SCEECTBTCCEESB---HHHHHHHTTCS
T ss_pred             CceEecccchhhHH---HHHHHHHccCC
Confidence            34577777777763   55777776555

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=87.36  E-value=0.17  Score=23.80  Aligned_cols=26  Identities=27%  Similarity=0.680  Sum_probs=19.0

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCee-ecCccccc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLF-SCPLCGEV   71 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~-~C~~C~~~   71 (82)
                      .+.|..|+..|...            +  .++ .|+.||..
T Consensus        73 ~~~C~~CG~~~e~~------------~--~~~~~CP~Cgs~   99 (119)
T 2kdx_A           73 ELECKDCSHVFKPN------------A--LDYGVCEKCHSK   99 (119)
T ss_dssp             EEECSSSSCEECSC------------C--STTCCCSSSSSC
T ss_pred             eEEcCCCCCEEeCC------------C--CCCCcCccccCC
Confidence            57889998887651            3  567 89999754

>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...

Probab=86.91  E-value=0.058  Score=23.89  Aligned_cols=32  Identities=19%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSH   75 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~   75 (82)
                      .|.|+.|+......          .+.  .-+.|+.|+..|+-.
T Consensus        27 ~y~Cp~CG~~~v~r----------~at--GiW~C~~Cg~~~agg   58 (83)
T 1vq8_Z           27 DHACPNCGEDRVDR----------QGT--GIWQCSYCDYKFTGG   58 (83)
T ss_dssp             CEECSSSCCEEEEE----------EET--TEEEETTTCCEEECC
T ss_pred             cCcCCCCCCcceec----------cCC--CeEECCCCCCEecCC
Confidence            58899998632211          112  468999999887654

>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}

Probab=86.52  E-value=0.26  Score=21.70  Aligned_cols=14  Identities=50%  Similarity=1.239  Sum_probs=11.4

Q ss_pred             CeeecCcccccccC
Q psy6273          61 NLFSCPLCGEVFRS   74 (82)
Q Consensus        61 ~~~~C~~C~~~f~~   74 (82)
                      =.|+|+.||.-|--
T Consensus        50 F~FkCP~CgEEFyG   63 (95)
T 2k5c_A           50 FVFKCPVCGEEFYG   63 (95)
T ss_dssp             SEEECTTTCCEEET
T ss_pred             HhhcCCCccHHHhc
Confidence            47999999987754

>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}

Probab=85.94  E-value=0.42  Score=17.99  Aligned_cols=25  Identities=16%  Similarity=0.349  Sum_probs=14.3

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ..+.|+.|+..+.. .....|.-.|-
T Consensus         8 ~~~~C~~C~~~i~~-~~~~EH~D~H~   32 (39)
T 2i5o_A            8 DQVPCEKCGSLVPV-WDMPEHMDYHF   32 (39)
T ss_dssp             CEEECTTTCCEEEG-GGHHHHHHHHH
T ss_pred             CCcccccccCcCCc-ccccchhhHHH
Confidence            34567777766655 33455655553

>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1

Probab=82.53  E-value=0.48  Score=18.51  Aligned_cols=13  Identities=31%  Similarity=0.879  Sum_probs=7.2

Q ss_pred             CCcccCcCCcccc
Q psy6273           2 TRYKCHACDVETK   14 (82)
Q Consensus         2 k~~~c~~c~~~~~   14 (82)
                      +.|.|..||..+.
T Consensus         3 ~~y~C~vCGyvyd   15 (46)
T 6rxn_A            3 QKYVCNVCGYEYD   15 (46)
T ss_dssp             CCEEETTTCCEEC
T ss_pred             CEEECCCCCeEEe
Confidence            4455666665544

>1wir_A Protein arginine N-methyltransferase 3; C2H2 zinc finger domain, PRMT3, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.37.1.5

Probab=81.14  E-value=2.1  Score=20.34  Aligned_cols=26  Identities=19%  Similarity=0.223  Sum_probs=21.8

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      .+..|-.|...|.+...+..|++..|
T Consensus        14 ~~~~CLFCd~~~~s~~~~l~H~k~~H   39 (121)
T 1wir_A           14 QHTPCLFCDRLFASAEETFSHCKLEH   39 (121)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHSS
T ss_pred             CceeEecCCCcccCHHHHHHHHHHhc
Confidence            46789999999999999999998443

>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=81.01  E-value=0.57  Score=20.33  Aligned_cols=14  Identities=29%  Similarity=0.572  Sum_probs=12.1

Q ss_pred             CeeecCcccccccC
Q psy6273          61 NLFSCPLCGEVFRS   74 (82)
Q Consensus        61 ~~~~C~~C~~~f~~   74 (82)
                      -||.|..|+..|-.
T Consensus        28 lpf~C~~C~~~FC~   41 (75)
T 1wys_A           28 LPFVCDGCSGIFCL   41 (75)
T ss_dssp             CCEECTTTCCEECS
T ss_pred             eeeECcccCcCcCc
Confidence            69999999998864

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}

Probab=80.72  E-value=0.82  Score=19.39  Aligned_cols=17  Identities=18%  Similarity=0.530  Sum_probs=13.1

Q ss_pred             CeeecCcccccccCccc
Q psy6273          61 NLFSCPLCGEVFRSHQG   77 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~~~   77 (82)
                      .+..|++||..|.....
T Consensus        39 g~~~CpYCg~~f~l~~~   55 (67)
T 2jrr_A           39 GWVECPYCDCKYVLKGS   55 (67)
T ss_dssp             SEEEETTTTEEEEETTS
T ss_pred             CeEECCCCCCEEEECCC
Confidence            67899999988875543

>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}

Probab=80.03  E-value=0.77  Score=20.17  Aligned_cols=13  Identities=31%  Similarity=0.856  Sum_probs=11.5

Q ss_pred             CeeecCccccccc
Q psy6273          61 NLFSCPLCGEVFR   73 (82)
Q Consensus        61 ~~~~C~~C~~~f~   73 (82)
                      ++..|++||..|.
T Consensus        55 ~~~RC~eCG~~fk   67 (80)
T 2odx_A           55 EVARCWECGSVYK   67 (80)
T ss_dssp             CEEECSSSCCEEE
T ss_pred             CCeECCCCCeEEE
Confidence            7999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	82
d1x6ha2	36	g.37.1.1 (A:8-43) Transcriptional repressor CTCF {	0.003

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]} Length = 36

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 30.4 bits (69), Expect = 0.003
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE 58
           HT  K +AC  C   F+    L  H ++ HD 
Sbjct: 2  THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP 34

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	82
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.85
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.81
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	99.53
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.53
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.52
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.43
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.42
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.41
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.39
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.37
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.36
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.36
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	99.36
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	99.35
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	99.35
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	99.34
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.32
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.32
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.32
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.3
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.3
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	99.29
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	99.25
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.21
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	99.18
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	99.17
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	99.14
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.12
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	99.12
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	99.12
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	99.08
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.99
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.98
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.91
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.91
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.88
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.82
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.82
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.81
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.79
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.74
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.67
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.67
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.42
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.38
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.38
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.33
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.28
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	98.27
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.17
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.14
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	98.13
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	98.12
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.11
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.1
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.1
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	98.08
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	98.06
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	98.04
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	98.04
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.99
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.96
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.92
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.92
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	97.83
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	97.83
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.81
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.72
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.69
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	97.65
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	97.65
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.59
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	97.59
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.59
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	97.53
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.47
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.46
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.44
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	97.35
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	97.26
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.05
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	97.05
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.91
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	96.65
d1y0jb1	36	U-shaped transcription factor, different fingers {	96.63
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.63
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.43
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	96.39
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	96.38
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.97
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	95.88
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	95.12
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	95.03
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.96
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.43
d2drpa1	37	Tramtrack protein (two zinc-finger peptide) {Droso	94.33
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	94.32
d1nnqa2	37	Rubrerythrin, C-terminal domain {Archaeon Pyrococc	94.02
d2j7ja1	28	Transcription factor IIIA, TFIIIA {Xenopus laevis	93.95
d1x3ca1	61	Zinc finger protein 292, ZNF292 {Human (Homo sapie	93.68
d1fu9a_	36	U-shaped transcription factor, different fingers {	91.74
d1wjpa3	41	Zinc finger protein 295, ZNF295 {Human (Homo sapie	91.2
d1x6fa1	75	Zinc finger protein 462, ZNF462 {Human (Homo sapie	90.65
d2gmga1	105	Hypothetical protein PF0610 {Pyrococcus furiosus [	90.5
d1tf3a3	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	90.11
d1lkoa2	44	Rubrerythrin, C-terminal domain {Desulfovibrio vul	88.81
d1wjva2	31	Cell growth regulating nucleolar protein LyaR {Mou	87.66
d2yrka1	48	Zinc finger homeobox protein 4, ZFHX4 {Human (Homo	86.98
d2dlka1	30	Zinc finger protein 692, ZNF692 {Human (Homo sapie	86.31
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	85.29
d2ghfa1	58	Zinc fingers and homeoboxes protein 1, ZHX1 {Human	84.46
d1iroa_	53	Rubredoxin {Clostridium pasteurianum [TaxId: 1501]	83.61
d2glia1	32	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	83.54
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	83.37
d1m36a_	33	Monocytic leukemia zinc finger protein Moz {Human	82.73
d1d4ua2	36	DNA repair factor XPA DNA- and RPA-binding domain,	82.43

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.5e-22  Score=81.77  Aligned_cols=53  Identities=23%  Similarity=0.506  Sum_probs=43.8

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCCCccccccchhhhcCcHHHHHHHHHh
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTETKSFACDQCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~   55 (82)
                      ||||.| .||+.|.....|..|++ +|++++||.|..|++.|...++|..|++.|
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~-~Ht~ekpy~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHH-HHSCCCSEECTTTSCEESSSHHHHHHHTTT
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhh-ccccccCCcCCCcCCEecCHHHHHHHHhcC
Confidence            678888 48888888888888887 888888888888888888888888887764

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2e-21  Score=79.48  Aligned_cols=50  Identities=24%  Similarity=0.462  Sum_probs=47.4

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      |++|.| .|++.|....+|..|++.|+++  +||.|..||++|...+.|..|+
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~Ht~e--kpy~C~~C~k~F~~~~~L~~H~   50 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGL--RPYGCGVCGKKFKMKHHLVGHM   50 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHHHSCC--CSEECTTTSCEESSSHHHHHHH
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhccccc--cCCcCCCcCCEecCHHHHHHHH
Confidence            579999 5999999999999999999999  9999999999999999999885

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.1e-16  Score=59.41  Aligned_cols=35  Identities=29%  Similarity=0.608  Sum_probs=19.1

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      |||.|.+||+.|....+|..|++.+|++++||.|.
T Consensus         4 Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~   38 (39)
T d2epsa1           4 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ   38 (39)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSS
T ss_pred             CCccCCCCCCCcCChHHhhccCcCccCCCcCcCCc
Confidence            55555555555555555555543245555555553

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.1e-15  Score=57.07  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=33.8

Q ss_pred             CCCccccccchhhhcCcHHHHHHHH-HhcCCCCCeeecCc
Q psy6273          29 ETKSFACDQCVSYFKTNSALLQHKR-KMHDEFVNLFSCPL   67 (82)
Q Consensus        29 ~~~~~~c~~c~~~~~~~~~l~~h~~-~~~~~~~~~~~C~~   67 (82)
                      .++||.|..|++.|...++|..|++ .|+++  +||.|..
T Consensus         2 ~~Kpy~C~~Cgk~F~~~~~L~~H~r~~Ht~e--kpy~C~i   39 (39)
T d2epsa1           2 VGKPYICQSCGKGFSRPDHLNGHIKQVHTSE--RPHKCQV   39 (39)
T ss_dssp             SSCCEECSSSCCEESSHHHHHHHHHHTSCCC--CCCCSSS
T ss_pred             CCCCccCCCCCCCcCChHHhhccCcCccCCC--cCcCCcC
Confidence            4789999999999999999999986 69999  9999963

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.6e-16  Score=58.47  Aligned_cols=37  Identities=27%  Similarity=0.539  Sum_probs=32.6

Q ss_pred             hHHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          21 NHILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        21 ~h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|+. +|++++||.|..|++.|...++|..|+++|+||
T Consensus         2 rH~~-~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2           2 RSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             CCCS-CCCCSCSSBCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ccCc-ccCCCCCEecCCCCceeeCHHHHHHhCccCCCC
Confidence            4666 889999999999999999999999999999886

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.8e-15  Score=54.41  Aligned_cols=33  Identities=33%  Similarity=0.663  Sum_probs=28.2

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|++++||.|..|++.|...++|..|+++|+||
T Consensus         1 IHTgekpy~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           1 IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             CcCCCCCeeCCCCCCEeCchHHhHhhccccCCC
Confidence            478888888888888888888888888888875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.43  E-value=8.8e-14  Score=49.40  Aligned_cols=29  Identities=24%  Similarity=0.501  Sum_probs=19.9

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      |||.|++|+++|...+.|.+|++ +|+|++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r-~HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYR-SHTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHH-TTTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccC-cccCCC
Confidence            56777777777777777777776 676653

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=3.1e-14  Score=50.08  Aligned_cols=28  Identities=25%  Similarity=0.490  Sum_probs=18.6

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      ||||.|++|+++|...++|..|++ +|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r-~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIR-THTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHH-HHHC
T ss_pred             CcCccCCCCcCEecccccccccCC-CccC
Confidence            566777777777777777777766 6543

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.4e-14  Score=52.25  Aligned_cols=33  Identities=33%  Similarity=0.660  Sum_probs=29.7

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|+|++||.|..|++.|...++|..|++.|+++
T Consensus         2 ~HTgekPy~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2           2 THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             TCCCCCCEECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             CCCCCCCEECCCCCCCcCCHhHHHHhCcccCCC
Confidence            688999999999999999999999999998875

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9.9e-14  Score=49.21  Aligned_cols=28  Identities=21%  Similarity=0.521  Sum_probs=14.8

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      |||.|.+|++.|...+.|..|++ +|+++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r-~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIK-THQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHH-GGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcC-ccCCc
Confidence            45555555555555555555555 55544

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=4.6e-15  Score=55.76  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=28.2

Q ss_pred             HHHhhCCCCCccccccchhhhcCcHHHHHHHHHhcC
Q psy6273          22 HILCVHTETKSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        22 h~~~~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      |.+ +|++++||.|..|++.|...++|..|++.|.+
T Consensus         2 h~R-~HTgeKPy~C~~C~k~F~~~~~L~~H~r~H~~   36 (37)
T d1p7aa_           2 STR-GSTGIKPFQCPDCDRSFSRSDHLALHRKRHML   36 (37)
T ss_dssp             CSS-TTCCSSSBCCTTTCCCBSSHHHHHHHHGGGTC
T ss_pred             CCC-ccCCccCeEeCCCCCEecCHHHHHHHHhcCcC
Confidence            345 78888888888888888888888888887763

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=1.5e-13  Score=50.69  Aligned_cols=32  Identities=25%  Similarity=0.535  Sum_probs=23.7

Q ss_pred             CCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          27 HTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        27 ~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++|++||.|..|++.|...++|..|++.|+.+
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccccCCc
Confidence            56777777777777777777777777777654

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.9e-13  Score=49.31  Aligned_cols=29  Identities=28%  Similarity=0.402  Sum_probs=27.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      +|||+|.+|+++|...+.|..|++ +|++|
T Consensus         5 ekpy~C~~Cgk~F~~~~~L~~H~r-~HtgE   33 (33)
T d1x6ea1           5 EKPYGCVECGKAFSRSSILVQHQR-VHTGE   33 (33)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHH-GGGCS
T ss_pred             CCCeeCCCCCCEeCchHHhHhhcc-ccCCC
Confidence            689999999999999999999999 99875

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.36  E-value=8.2e-14  Score=52.26  Aligned_cols=28  Identities=25%  Similarity=0.542  Sum_probs=19.8

Q ss_pred             HHHhcCCCCCeeecCcccccccCccccccc
Q psy6273          52 KRKMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        52 ~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      .+.|+||  +||.|..|+++|...+.|.+|
T Consensus         3 ~R~HTge--KPy~C~~C~k~F~~~~~L~~H   30 (37)
T d1p7aa_           3 TRGSTGI--KPFQCPDCDRSFSRSDHLALH   30 (37)
T ss_dssp             SSTTCCS--SSBCCTTTCCCBSSHHHHHHH
T ss_pred             CCccCCc--cCeEeCCCCCEecCHHHHHHH
Confidence            4567777  777777777777777777665

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.4e-13  Score=50.26  Aligned_cols=29  Identities=31%  Similarity=0.545  Sum_probs=27.5

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      +|||.|.+|+++|...++|..|++ +|+||
T Consensus        10 ekpy~C~~CgK~F~~~s~L~~H~r-~HtGE   38 (38)
T d2cota2          10 RRRYKCDECGKSFSHSSDLSKHRR-THTGE   38 (38)
T ss_dssp             SCSSBCSSSCCBCSCHHHHHHHHT-TTCCS
T ss_pred             CCCEecCCCCceeeCHHHHHHhCc-cCCCC
Confidence            689999999999999999999999 99885

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=1.9e-13  Score=48.04  Aligned_cols=28  Identities=29%  Similarity=0.579  Sum_probs=24.4

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcC
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      |+||.|..|++.|...++|..|+++|+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             CcCccCCCCcCEecccccccccCCCccC
Confidence            5788999999999999999999998876

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=99.34  E-value=2.5e-13  Score=48.22  Aligned_cols=28  Identities=32%  Similarity=0.674  Sum_probs=26.8

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +||.|+.|++.|...+.|..|+++|+||
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~HTgE   28 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRSHTNE   28 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHTTTSS
T ss_pred             CcCCCCCCCCCCCCchHcccccCcccCC
Confidence            5899999999999999999999999998

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.3e-14  Score=53.43  Aligned_cols=33  Identities=24%  Similarity=0.516  Sum_probs=28.0

Q ss_pred             hCCCCCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          26 VHTETKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        26 ~~~~~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|+|++||.|+.|++.|...++|..|++.++++
T Consensus         2 ~HTgekP~~C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           2 THSGEKPYECYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CCSCCCSEECTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             ccCCCCCEeCCCCcccccchHHHHHHcccccCC
Confidence            688889999999999999999999998876654

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6.4e-13  Score=47.07  Aligned_cols=28  Identities=29%  Similarity=0.626  Sum_probs=26.7

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +||.|..|++.|...++|..|+++|+|+
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~Htge   28 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKTHQNK   28 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHGGGCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCccCCc
Confidence            5899999999999999999999999998

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4e-14  Score=52.80  Aligned_cols=28  Identities=29%  Similarity=0.644  Sum_probs=25.6

Q ss_pred             HHhcCCCCCeeecCcccccccCcccccccC
Q psy6273          53 RKMHDEFVNLFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        53 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      ++|+|+  +||.|.+|+++|...+.|..|+
T Consensus         1 R~HTge--kPy~C~~C~k~F~~~~~L~~H~   28 (36)
T d1x6ha2           1 RTHTGE--KPYACSHCDKTFRQKQLLDMHF   28 (36)
T ss_dssp             TTCCCC--CCEECSSSSCEESSHHHHHHHH
T ss_pred             CCCCCC--CCEECCCCCCCcCCHhHHHHhC
Confidence            468999  9999999999999999999884

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=5.3e-13  Score=49.57  Aligned_cols=32  Identities=25%  Similarity=0.556  Sum_probs=23.0

Q ss_pred             cccc--cchhhhcCcHHHHHHHHHhcCCCCCeeecC
Q psy6273          33 FACD--QCVSYFKTNSALLQHKRKMHDEFVNLFSCP   66 (82)
Q Consensus        33 ~~c~--~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~   66 (82)
                      |.|+  .|++.|...+.|..|+++|+|+  +||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~Htge--kpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKLHSDT--RDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHHHHTS--CCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCeeCCC--CCEeCC
Confidence            4454  3777777777777777777777  777775

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4.1e-13  Score=46.17  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=18.2

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      |||+|.+||++|...+.|..|++ +|
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqr-iH   25 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQR-IH   25 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH-HH
T ss_pred             CCccCCCCcCeeccCcccccCcc-CC
Confidence            57777777777777777777776 54

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=7.4e-13  Score=49.24  Aligned_cols=26  Identities=23%  Similarity=0.534  Sum_probs=14.3

Q ss_pred             HhcCCCCCeeecCcccccccCccccccc
Q psy6273          54 KMHDEFVNLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        54 ~~~~~~~~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      +|+||  +||.|+.|+++|...++|++|
T Consensus         2 ~HTge--kP~~C~~C~k~F~~~~~L~~H   27 (36)
T d2ct1a2           2 THSGE--KPYECYICHARFTQSGTMKMH   27 (36)
T ss_dssp             CCSCC--CSEECTTTCCEESCHHHHHHH
T ss_pred             ccCCC--CCEeCCCCcccccchHHHHHH
Confidence            34555  555555555555555555554

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.25  E-value=3.7e-12  Score=46.91  Aligned_cols=29  Identities=28%  Similarity=0.502  Sum_probs=27.0

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      +|||.|.+|++.|....+|..|++ +|+..
T Consensus         5 ekPy~C~~C~k~F~~~~~L~~H~r-~Ht~~   33 (35)
T d1srka_           5 KRPFVCRICLSAFTTKANCARHLK-VHTDT   33 (35)
T ss_dssp             CSCEECSSSCCEESSHHHHHHHHG-GGTSC
T ss_pred             CccccCCCCCCcccChHHHHHHcc-ccCCc
Confidence            699999999999999999999998 88764

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1e-11  Score=44.19  Aligned_cols=28  Identities=25%  Similarity=0.408  Sum_probs=19.9

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhCCCC
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      |||.|..  |+++|...++|..|++ +|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLR-SHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHH-HTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcC-cCcCC
Confidence            5777766  7777777777777776 77664

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.7e-12  Score=43.46  Aligned_cols=26  Identities=35%  Similarity=0.682  Sum_probs=19.6

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      +||.|..|++.|...++|..|++.|+
T Consensus         1 KPy~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHH
T ss_pred             CCccCCCCcCeeccCcccccCccCCC
Confidence            46777777777777777777777764

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=5.6e-12  Score=46.73  Aligned_cols=32  Identities=22%  Similarity=0.766  Sum_probs=29.6

Q ss_pred             cccCc--CCccccCHHHHHhHHHhhCCCCCccccc
Q psy6273           4 YKCHA--CDVETKTRQALDNHILCVHTETKSFACD   36 (82)
Q Consensus         4 ~~c~~--c~~~~~~~~~l~~h~~~~~~~~~~~~c~   36 (82)
                      |.|+.  |+++|.....|.+|++ +|++++||.|+
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r-~Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMK-LHSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHH-HHHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccC-eeCCCCCEeCC
Confidence            67776  9999999999999999 99999999986

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=1.1e-12  Score=51.51  Aligned_cols=38  Identities=21%  Similarity=0.437  Sum_probs=32.5

Q ss_pred             HHhHHHhhCCCCCcccccc--chhhhcCcHHHHHHHHHhcCC
Q psy6273          19 LDNHILCVHTETKSFACDQ--CVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        19 l~~h~~~~~~~~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +..|+  .|.+++||.|..  |++.|...++|..|+++|+|+
T Consensus         7 l~~h~--~h~gekpy~C~~~~C~k~F~~~~~L~~H~r~Htge   46 (47)
T d1ncsa_           7 IDKYV--KEMPDKTFECLFPGCTKTFKRRYNIRSHIQTHLED   46 (47)
T ss_dssp             GGGSC--EEETTTEEECCCTTCCCEECSSSSHHHHHHHHTTT
T ss_pred             hcchh--hccCCCCeECCcCCCCccccCchHHHhhcccccCC
Confidence            45554  488999999966  999999999999999999987

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.1e-11  Score=44.08  Aligned_cols=27  Identities=22%  Similarity=0.498  Sum_probs=15.4

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhCCC
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      |||.|+.  |+++|...++|..|++ +|+|
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r-~HTG   29 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVR-IHTG   29 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHH-HHHC
T ss_pred             CCccCCCCCCCceECcHHHcCcccc-ccCC
Confidence            4555544  6666666666666655 5554

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.5e-11  Score=42.83  Aligned_cols=29  Identities=24%  Similarity=0.438  Sum_probs=21.2

Q ss_pred             CCcccC--cCCccccCHHHHHhHHHhhCCCCC
Q psy6273           2 TRYKCH--ACDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         2 k~~~c~--~c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      |||.|+  .|++.|...++|..|++ +|++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r-~HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKR-THTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHT-TTSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcC-cccccC
Confidence            577774  47777777777777777 777763

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.9e-11  Score=43.47  Aligned_cols=28  Identities=25%  Similarity=0.409  Sum_probs=25.4

Q ss_pred             Ccccccc--chhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQ--CVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +||.|..  |++.|...++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCcCcCC
Confidence            5789977  999999999999999999986

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.4e-11  Score=43.21  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=24.9

Q ss_pred             Ccccccc--chhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQ--CVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +||.|+.  |++.|...++|..|+++|+||
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccccCCC
Confidence            5788966  999999999999999999986

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=1.9e-10  Score=41.36  Aligned_cols=28  Identities=29%  Similarity=0.446  Sum_probs=19.8

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCC
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      ||||.|..  |++.|...++|.+|++ +|+.
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r-~Ht~   30 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKK-SHQE   30 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHG-GGTC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhh-hccC
Confidence            56777766  7777777777777776 6653

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=9e-11  Score=42.01  Aligned_cols=28  Identities=32%  Similarity=0.649  Sum_probs=25.3

Q ss_pred             Ccccc--ccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFAC--DQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c--~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +||.|  +.|++.|...++|..|+++|+|+
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~Htge   30 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTTTSCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCccccc
Confidence            47888  56999999999999999999997

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.91  E-value=1.5e-10  Score=40.74  Aligned_cols=26  Identities=35%  Similarity=0.668  Sum_probs=16.4

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhCC
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVHT   28 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~~   28 (82)
                      |||.|..  |+++|...++|..|++ +|+
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r-~Ht   28 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIR-IHT   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTH-HHH
T ss_pred             CCeECCCCCCCcEECchhHhhhhcC-ccC
Confidence            4666655  6666666666666665 554

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=7e-11  Score=46.21  Aligned_cols=30  Identities=27%  Similarity=0.517  Sum_probs=27.6

Q ss_pred             CCCcccCc--CCccccCHHHHHhHHHhhCCCCC
Q psy6273           1 MTRYKCHA--CDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         1 ~k~~~c~~--c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      ++||.|..  |++.|...++|..|++ +|++++
T Consensus        16 ekpy~C~~~~C~k~F~~~~~L~~H~r-~Htgek   47 (47)
T d1ncsa_          16 DKTFECLFPGCTKTFKRRYNIRSHIQ-THLEDR   47 (47)
T ss_dssp             TTEEECCCTTCCCEECSSSSHHHHHH-HHTTTC
T ss_pred             CCCeECCcCCCCccccCchHHHhhcc-cccCCC
Confidence            58999987  9999999999999999 999874

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.1e-09  Score=38.37  Aligned_cols=31  Identities=23%  Similarity=0.464  Sum_probs=21.0

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCCcc
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETKSF   33 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~   33 (82)
                      |...|..||+.|.....|.+|.. +|++++||
T Consensus         4 k~~~ce~cgk~frdvyhlnrhkl-shs~ekpy   34 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKL-SHSGEKPY   34 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGG-GSCSCCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhc-ccCCCCCC
Confidence            34556777777777777777766 67777665

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=1.3e-09  Score=39.13  Aligned_cols=29  Identities=28%  Similarity=0.755  Sum_probs=23.8

Q ss_pred             CCcccccc--chhhhcCcHHHHHHHHHhcCC
Q psy6273          30 TKSFACDQ--CVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        30 ~~~~~c~~--c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++||.|..  |++.|...++|..|+++|+..
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhhccCC
Confidence            57888866  999999999999998888753

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=5.8e-10  Score=39.19  Aligned_cols=27  Identities=26%  Similarity=0.547  Sum_probs=20.4

Q ss_pred             Ccccccc--chhhhcCcHHHHHHHHHhcC
Q psy6273          31 KSFACDQ--CVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        31 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~   57 (82)
                      +||.|..  |++.|...++|..|++.|+|
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCccCC
Confidence            4677755  88888888888888887765

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.8e-09  Score=37.04  Aligned_cols=29  Identities=21%  Similarity=0.549  Sum_probs=24.2

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      +|||.|+.|...|..+..+.-|.+ +|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvr-shdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVR-SHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHH-HHSCC
T ss_pred             CCCcccchHHHHhhccccceEeee-cccCc
Confidence            688999999999999988888887 77653

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.2e-09  Score=34.82  Aligned_cols=26  Identities=27%  Similarity=0.500  Sum_probs=18.4

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      |.+|+.|++.|+.+..|..|++ .|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr-~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMR-CHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGG-GCCC
T ss_pred             CCccchhhhHhcchhHHHHHhh-ccCC
Confidence            5667777777777777777776 6653

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=6.4e-10  Score=38.70  Aligned_cols=25  Identities=32%  Similarity=0.648  Sum_probs=14.4

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhC
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVH   27 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~   27 (82)
                      |||.|..  |++.|...++|..|++ +|
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r-~H   27 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHIL-TH   27 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHH-HH
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHh-hc
Confidence            4555654  6666666666666655 44

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.4e-09  Score=37.22  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=13.5

Q ss_pred             cccccc--chhhhcCcHHHHHHHHHh
Q psy6273          32 SFACDQ--CVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        32 ~~~c~~--c~~~~~~~~~l~~h~~~~   55 (82)
                      ||.|..  |++.|...++|..|+++|
T Consensus         2 Pf~C~~~gC~K~F~~~~~L~~H~r~H   27 (28)
T d1ubdc4           2 PYVCPFDGCNKKFAQSTNLKSHILTH   27 (28)
T ss_dssp             CCCCCSTTCCCCCSSTTTTHHHHHHH
T ss_pred             CcCCCCCCcCCcCCCHHHHHHHHhhc
Confidence            455533  556666666666665555

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2.8e-09  Score=34.96  Aligned_cols=26  Identities=23%  Similarity=0.451  Sum_probs=22.9

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      |..|+.|++.|..++.|..|++.|+|
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             CCccchhhhHhcchhHHHHHhhccCC
Confidence            46799999999999999999998875

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.9e-08  Score=33.98  Aligned_cols=27  Identities=15%  Similarity=0.389  Sum_probs=21.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHT   28 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~   28 (82)
                      +|||.|..||+.|.......+|.+ +|.
T Consensus         1 EkPf~C~~CgrkFArsderkRH~k-iH~   27 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTK-IHL   27 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHG-GGC
T ss_pred             CCCcccchhhhhhhcchhhhhhhh-hcc
Confidence            578888888888888888888876 653

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=8.9e-09  Score=36.05  Aligned_cols=32  Identities=31%  Similarity=0.503  Sum_probs=29.0

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeee
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFS   64 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~   64 (82)
                      +...|..|++.|.....|.+|..+|.+|  +||.
T Consensus         4 k~~~ce~cgk~frdvyhlnrhklshs~e--kpys   35 (35)
T d2epra1           4 KQVACEICGKIFRDVYHLNRHKLSHSGE--KPYS   35 (35)
T ss_dssp             CSEEETTTTEEESSHHHHHHHGGGSCSC--CCCC
T ss_pred             hhhhHHHHHHHHHHHHHHHhhhcccCCC--CCCC
Confidence            4568999999999999999999999999  9883

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.2e-08  Score=34.42  Aligned_cols=21  Identities=33%  Similarity=0.763  Sum_probs=17.4

Q ss_pred             CeeecCcccccccCccccccc
Q psy6273          61 NLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      +||.|..||+.|+.+...++|
T Consensus         2 kPf~C~~CgrkFArsderkRH   22 (28)
T d1a1ia3           2 KPFACDICGRKFARSDERKRH   22 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHH
T ss_pred             CCcccchhhhhhhcchhhhhh
Confidence            899999999999887776655

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.4e-07  Score=31.42  Aligned_cols=26  Identities=31%  Similarity=0.465  Sum_probs=19.4

Q ss_pred             cccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           4 YKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      ..|.+||++|...+.|.+|+. .|+++
T Consensus         3 hvc~ecgkaf~essklkrh~l-vhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQL-VHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGG-GTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhh-cccCC
Confidence            457778888888888888877 77664

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=3e-07  Score=30.74  Aligned_cols=28  Identities=25%  Similarity=0.553  Sum_probs=16.4

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      ++||+|..|.......+.|..|.+ .|+|
T Consensus         1 erpfkcqlcsy~srnssqltvhlr-~htg   28 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLR-SHTG   28 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHT-TCCS
T ss_pred             CCcceeeecccccCCchheEEeee-cccC
Confidence            456666666666666666666655 5544

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.3e-08  Score=32.43  Aligned_cols=29  Identities=24%  Similarity=0.462  Sum_probs=23.6

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++||.|..|.+.....+.|.-|++.|+|+
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             CCcceeeecccccCCchheEEeeecccCc
Confidence            46888888888888888888888888874

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2e-07  Score=31.35  Aligned_cols=26  Identities=31%  Similarity=0.510  Sum_probs=16.3

Q ss_pred             cccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      |.|+.|+.....++-|+.|+++|+++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIRsHT~~   27 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIRTHTDV   27 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHHHTSSC
T ss_pred             ccccccCcccCCHHHHHHHHHHhcCC
Confidence            45666666666666666666666654

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.9e-07  Score=31.45  Aligned_cols=29  Identities=24%  Similarity=0.478  Sum_probs=25.9

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ++||+|+.|...|..++-+.-|.++|.|.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             CCCcccchHHHHhhccccceEeeecccCc
Confidence            57899999999999999999999998875

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=8.5e-07  Score=29.39  Aligned_cols=27  Identities=30%  Similarity=0.803  Sum_probs=18.7

Q ss_pred             CCCcccCcCCccccCHHHHHhHHHhhCC
Q psy6273           1 MTRYKCHACDVETKTRQALDNHILCVHT   28 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~~~~~   28 (82)
                      .||++|..|+.+-...+.|..|.+ .|.
T Consensus         1 vkp~kck~cdyaaadsssl~kh~r-ihs   27 (28)
T d2dmda1           1 VKPYKCKTCDYAAADSSSLNKHLR-IHS   27 (28)
T ss_dssp             CCSEECSSSCCEESSHHHHHHHHH-HSC
T ss_pred             CCCcccccccchhcchhhHhhhhh-ccc
Confidence            367777777777777777777766 553

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.2e-07  Score=30.26  Aligned_cols=26  Identities=27%  Similarity=0.666  Sum_probs=16.7

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      |||.|..|.......++|..|++..|
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkh   26 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKH   26 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHT
T ss_pred             CCccccccccccccchhhhhhhhccc
Confidence            56677777766666667766666333

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5e-07  Score=30.82  Aligned_cols=23  Identities=22%  Similarity=0.530  Sum_probs=11.1

Q ss_pred             CCcccCc--CCccccCHHHHHhHHH
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHIL   24 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~   24 (82)
                      |||.|..  |++++...+.|..|++
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k   25 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVK   25 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHH
Confidence            3444443  4455555555555544

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=2.1e-06  Score=28.82  Aligned_cols=22  Identities=32%  Similarity=0.706  Sum_probs=18.1

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      ||.|..|...|.++++|..|++
T Consensus         1 py~C~~CnF~FKTKGNLTKHmk   22 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMK   22 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhhh
Confidence            6778888888888888888876

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.6e-06  Score=28.56  Aligned_cols=27  Identities=33%  Similarity=0.768  Sum_probs=24.7

Q ss_pred             cccCcCCccccCHHHHHhHHHhhCCCCC
Q psy6273           4 YKCHACDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      |.|+.|+....-.+-|+.|++ +|++++
T Consensus         2 YvC~~Cg~~C~KPSvL~KHIR-sHT~~R   28 (28)
T d1bboa1           2 YICEECGIRAKKPSMLKKHIR-THTDVR   28 (28)
T ss_dssp             CBCTTTCCBCSSHHHHHHHHH-HTSSCC
T ss_pred             ccccccCcccCCHHHHHHHHH-HhcCCC
Confidence            789999999999999999999 998763

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.12  E-value=2.3e-06  Score=31.11  Aligned_cols=29  Identities=34%  Similarity=0.677  Sum_probs=20.3

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      +.|+|..|++.|.+...|-.|+. .|..++
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~-~Hr~~r   32 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMN-VHRRDR   32 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHH-TTCCSC
T ss_pred             CccCCCCCCCccCCcccccchHh-hhcchH
Confidence            45777777777777777777776 665443

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2.4e-06  Score=29.08  Aligned_cols=27  Identities=26%  Similarity=0.675  Sum_probs=22.7

Q ss_pred             Ccccccc--chhhhcCcHHHHHHHHHhcC
Q psy6273          31 KSFACDQ--CVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        31 ~~~~c~~--c~~~~~~~~~l~~h~~~~~~   57 (82)
                      +||.|..  |++.+..+++|..|+++++|
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHhhCC
Confidence            4777844  99999999999999998664

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=4.6e-07  Score=30.13  Aligned_cols=26  Identities=27%  Similarity=0.462  Sum_probs=16.2

Q ss_pred             cccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      ..|..|++.|...+.|.+|+..|+|+
T Consensus         3 hvc~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           3 HVCAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             EECTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             chHHHHhHHHHHHHHHHHHhhcccCC
Confidence            35666666666666666666666553

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.10  E-value=2e-06  Score=29.56  Aligned_cols=27  Identities=26%  Similarity=0.496  Sum_probs=20.0

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhCCC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      ||.|..|++.|.....|.+|+...|.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhcC
Confidence            678888888888888888877644543

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=1.5e-07  Score=31.69  Aligned_cols=21  Identities=19%  Similarity=0.558  Sum_probs=14.2

Q ss_pred             eeecCcccccccCcccccccC
Q psy6273          62 LFSCPLCGEVFRSHQGYKIHH   82 (82)
Q Consensus        62 ~~~C~~C~~~f~~~~~l~~H~   82 (82)
                      ||.|..|..+|....+|.+||
T Consensus         1 py~C~~CnF~FKTKGNLTKHm   21 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHM   21 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHH
T ss_pred             CcccceeeeeEeeccchhHhh
Confidence            566777777777777666654

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=98.06  E-value=2.3e-06  Score=27.59  Aligned_cols=23  Identities=39%  Similarity=0.720  Sum_probs=17.4

Q ss_pred             cccCcCCccccCHHHHHhHHHhhC
Q psy6273           4 YKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      |+|..|++.|..++.|.+|++ .|
T Consensus         1 ykcglcersfveksalsrhqr-vh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQR-VH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGG-GT
T ss_pred             CcccchHHHHHHHHHHHHHHH-hh
Confidence            567778888888888887776 55

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=98.04  E-value=2e-06  Score=28.75  Aligned_cols=25  Identities=32%  Similarity=0.561  Sum_probs=18.3

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhC
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVH   27 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~   27 (82)
                      .||+|++  |++.|...+.|.+|.+ +|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhek-vh   28 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEK-VH   28 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHH-HH
T ss_pred             CCccCCccCccccccCHHHHhhhhh-cc
Confidence            4777765  8888888888888776 44

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=2e-06  Score=28.14  Aligned_cols=25  Identities=32%  Similarity=0.515  Sum_probs=15.6

Q ss_pred             ccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          34 ACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        34 ~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +|+.|.+.|.++..|.-|-+.|+|+
T Consensus         2 qcp~c~k~f~skyylkvhnr~htge   26 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGE   26 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSC
T ss_pred             cCcchHHHHHHhHhhhhccccccCC
Confidence            4566666666666666666666655

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=6.3e-07  Score=32.95  Aligned_cols=21  Identities=19%  Similarity=0.660  Sum_probs=15.4

Q ss_pred             CeeecCcccccccCccccccc
Q psy6273          61 NLFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        61 ~~~~C~~C~~~f~~~~~l~~H   81 (82)
                      +||.|..|++.|-+..++.+|
T Consensus         4 KPYeC~~C~KrFMWRDSF~RH   24 (44)
T d2csha2           4 KPYECNICAKRFMWRDSFHRH   24 (44)
T ss_dssp             CCEECSSSCCEESCHHHHHHH
T ss_pred             CceeccchhhhhhhHHHHHHh
Confidence            777787787777777666555

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.96  E-value=9.2e-07  Score=29.74  Aligned_cols=27  Identities=26%  Similarity=0.560  Sum_probs=15.1

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhCCC
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      +||.|..  |++.|.+...|.+|.. +|+|
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~-thtg   29 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSL-THTG   29 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHH-HHHT
T ss_pred             CCcCcccccccccchhhhhhhhhhc-cccC
Confidence            3555543  6666666666666654 5543

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=3.6e-06  Score=27.85  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=19.4

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      +|+.|..|++.....++|..|++.|.
T Consensus         2 kp~kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHHSC
T ss_pred             CCcccccccchhcchhhHhhhhhccc
Confidence            56777777777777777777777664

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=5.8e-06  Score=27.66  Aligned_cols=28  Identities=25%  Similarity=0.481  Sum_probs=18.6

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +-|.|..|...|...-.|.-||.+|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeeecccCC
Confidence            4466667777777766677777766654

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=6.7e-06  Score=29.73  Aligned_cols=26  Identities=19%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             CCCcccC--cCCccccCHHHHHhHHHhhC
Q psy6273           1 MTRYKCH--ACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         1 ~k~~~c~--~c~~~~~~~~~l~~h~~~~~   27 (82)
                      +|||.|.  -|+..|.+...|..|.. .|
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~-KH   31 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKH-KH   31 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHH-HH
T ss_pred             CCceecCCCCccccccchHHHHHhhh-hh
Confidence            5888884  48888888888888876 55

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=8.9e-06  Score=29.82  Aligned_cols=24  Identities=21%  Similarity=0.592  Sum_probs=17.9

Q ss_pred             CCCcccCcCCccccCHHHHHhHHH
Q psy6273           1 MTRYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      .|||+|..|++.|-....+.+|..
T Consensus         3 iKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           3 IKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCceeccchhhhhhhHHHHHHhhh
Confidence            378888888888888777777753

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=1.2e-05  Score=26.29  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.2

Q ss_pred             ccCcCCccccCHHHHHhHHHhhCCCCC
Q psy6273           5 KCHACDVETKTRQALDNHILCVHTETK   31 (82)
Q Consensus         5 ~c~~c~~~~~~~~~l~~h~~~~~~~~~   31 (82)
                      +|+.|.+.|.++.-|..|-+ .|+|++
T Consensus         2 qcp~c~k~f~skyylkvhnr-~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNR-KHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHH-HHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccc-cccCCC
Confidence            69999999999999999988 888864

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.72  E-value=2.4e-06  Score=28.56  Aligned_cols=21  Identities=29%  Similarity=0.597  Sum_probs=17.3

Q ss_pred             CeeecCc--ccccccCccccccc
Q psy6273          61 NLFSCPL--CGEVFRSHQGYKIH   81 (82)
Q Consensus        61 ~~~~C~~--C~~~f~~~~~l~~H   81 (82)
                      .||+|+.  |++.|+..+.|++|
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrh   24 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRH   24 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhh
Confidence            5888865  88999998888876

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=3e-05  Score=25.47  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      ||+|.-||+.+..+.+|..|..
T Consensus         1 pf~c~kcgkcyfrkenllehea   22 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEA   22 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHH
Confidence            7889999999999998888865

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=97.65  E-value=6.9e-06  Score=26.44  Aligned_cols=23  Identities=35%  Similarity=0.658  Sum_probs=16.3

Q ss_pred             cccccchhhhcCcHHHHHHHHHh
Q psy6273          33 FACDQCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        33 ~~c~~c~~~~~~~~~l~~h~~~~   55 (82)
                      |.|..|.+.|..++.|.+|++.|
T Consensus         1 ykcglcersfveksalsrhqrvh   23 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRVH   23 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGGT
T ss_pred             CcccchHHHHHHHHHHHHHHHhh
Confidence            45677777777777777777655

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=3.1e-05  Score=25.99  Aligned_cols=27  Identities=26%  Similarity=0.477  Sum_probs=22.4

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      +||+|..|.......++|..|..+.++
T Consensus         1 kpy~cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             CCccccccccccccchhhhhhhhcccc
Confidence            478899998888888999999887654

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=3.2e-05  Score=25.92  Aligned_cols=22  Identities=32%  Similarity=0.744  Sum_probs=12.1

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      ||+|..|..-....++|..|++
T Consensus         2 PFkC~~CsFDtkq~SnL~kH~k   23 (29)
T d1x5wa2           2 PFKCNYCSFDTKQPSNLSKHMK   23 (29)
T ss_dssp             SEECSSSSCEESSHHHHHHHHH
T ss_pred             CcccceecccccCcchHHHHHH
Confidence            5555555555555555555554

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=97.59  E-value=2.2e-05  Score=26.30  Aligned_cols=28  Identities=29%  Similarity=0.533  Sum_probs=22.4

Q ss_pred             Ccccc--ccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFAC--DQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c--~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +||+|  ..|.+.|.+.-.|.+|.-+|+|+
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhccccCC
Confidence            35666  56888999999999998888875

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.59  E-value=3.5e-05  Score=24.71  Aligned_cols=22  Identities=27%  Similarity=0.789  Sum_probs=17.7

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      ||+|..|...|-.+.+|+.|+.
T Consensus         2 pykcsscsqqfmqkkdlqshmi   23 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMI   23 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHH
Confidence            7888888888888888887764

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.53  E-value=2.9e-05  Score=28.16  Aligned_cols=28  Identities=25%  Similarity=0.523  Sum_probs=24.4

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~   58 (82)
                      +.|.|..|++.|.+..+|--||+.|..+
T Consensus         4 r~~~C~~C~k~F~s~qALGGH~~~Hr~~   31 (37)
T d1njqa_           4 RSYTCSFCKREFRSAQALGGHMNVHRRD   31 (37)
T ss_dssp             SSEECTTTCCEESSHHHHHHHHHTTCCS
T ss_pred             CccCCCCCCCccCCcccccchHhhhcch
Confidence            4589999999999999999999988765

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.47  E-value=9.1e-06  Score=27.87  Aligned_cols=21  Identities=19%  Similarity=0.531  Sum_probs=16.6

Q ss_pred             CeeecCc--ccccccCccccccc
Q psy6273          61 NLFSCPL--CGEVFRSHQGYKIH   81 (82)
Q Consensus        61 ~~~~C~~--C~~~f~~~~~l~~H   81 (82)
                      +||.|..  |.++|+..+.-.+|
T Consensus         1 kPY~C~~~gC~KafsNsSDraKH   23 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKH   23 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHH
T ss_pred             CCccccCCChhhhhcchhhhhhh
Confidence            5889976  99999988876555

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=4.9e-05  Score=25.46  Aligned_cols=27  Identities=33%  Similarity=0.620  Sum_probs=19.4

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      +||.|..|..-...+++|..|++.-++
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk~H~   27 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKKFHG   27 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHHHHS
T ss_pred             CCcccceecccccCcchHHHHHHHHcc
Confidence            367788887777777888887765444

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.44  E-value=8.8e-05  Score=24.70  Aligned_cols=28  Identities=25%  Similarity=0.555  Sum_probs=24.8

Q ss_pred             CCcccCcCCccccCHHHHHhHHHhhCCCC
Q psy6273           2 TRYKCHACDVETKTRQALDNHILCVHTET   30 (82)
Q Consensus         2 k~~~c~~c~~~~~~~~~l~~h~~~~~~~~   30 (82)
                      .-|.|..|...|...-.|..|+. +|+|+
T Consensus         3 qvftcs~cqe~f~rrmelr~hmv-shtge   30 (30)
T d2dlqa3           3 QVFTCSVCQETFRRRMELRLHMV-SHTGE   30 (30)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHH-HHSSS
T ss_pred             ceEEeHHHHHHHHHHHhheeeee-cccCC
Confidence            46889999999999999999998 88764

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=97.35  E-value=3e-05  Score=26.53  Aligned_cols=26  Identities=27%  Similarity=0.728  Sum_probs=20.8

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      ||.|..|++.|...+-|.+|++..++
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTTSC
T ss_pred             CcccccccchhhHHHHHHHHHHHHhc
Confidence            57888899999998888888876443

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.00023  Score=23.38  Aligned_cols=25  Identities=24%  Similarity=0.586  Sum_probs=19.6

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      .|.|++|+.....+++|..|.++.|
T Consensus         2 k~qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHHTS
T ss_pred             CccCCcchhheeehhhhhHHhhhcc
Confidence            3678889988888888888876433

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00038  Score=22.91  Aligned_cols=24  Identities=29%  Similarity=0.544  Sum_probs=17.2

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      |-+|++|.....++..|..|.+ .|
T Consensus         2 pekc~ecsyscsskaalrvh~r-ih   25 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHER-IH   25 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHG-GG
T ss_pred             CccCcccccccCcHHHHHHhhc-cc
Confidence            4567777777777777777766 54

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=97.05  E-value=0.0004  Score=22.25  Aligned_cols=21  Identities=24%  Similarity=0.551  Sum_probs=17.5

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      |.|+.|-+.|..+.++..|.+
T Consensus         2 ypcp~cfkeftrkdnm~ahvk   22 (26)
T d2drpa2           2 YPCPFCFKEFTRKDNMTAHVK   22 (26)
T ss_dssp             EECTTTCCEESCHHHHHHHHH
T ss_pred             cCCchhhHHhccccCceEEEE
Confidence            678888888888888888876

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.91  E-value=0.00034  Score=25.17  Aligned_cols=27  Identities=33%  Similarity=0.586  Sum_probs=22.5

Q ss_pred             CCcccc--ccchhhhcCcHHHHHHHHHhc
Q psy6273          30 TKSFAC--DQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        30 ~~~~~c--~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ++||.|  +.|+..|.+.+.|..|...|.
T Consensus         4 dkPF~C~~pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_           4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             CCCEECCCTTTCCEESSHHHHHHHHHHHH
T ss_pred             CCceecCCCCccccccchHHHHHhhhhhe
Confidence            688888  778889999999988887664

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.65  E-value=0.00052  Score=23.91  Aligned_cols=26  Identities=19%  Similarity=0.570  Sum_probs=17.7

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      .|.|..|++.|.....+.+|.....|
T Consensus         4 afvcskcgktftrrntm~rha~nc~g   29 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADNCAG   29 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHHCCC
T ss_pred             eeeecccccchhcchHHHHHhhhcCC
Confidence            36677777777777777777666554

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.63  E-value=0.00072  Score=23.32  Aligned_cols=21  Identities=19%  Similarity=0.586  Sum_probs=17.6

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      |.|..||-.|++.+.|..|+.
T Consensus         9 f~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1           9 FMCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             CBCTTTCCBCSCHHHHHHHTT
T ss_pred             eeccccceeecChhHHHhhhh
Confidence            678889999999988888864

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00046  Score=24.24  Aligned_cols=19  Identities=32%  Similarity=0.422  Sum_probs=13.8

Q ss_pred             hhhcCcHHHHHHHHHhcCC
Q psy6273          40 SYFKTNSALLQHKRKMHDE   58 (82)
Q Consensus        40 ~~~~~~~~l~~h~~~~~~~   58 (82)
                      +.|.....|..|++.|+||
T Consensus        15 ~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2          15 RPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             CCCSSHHHHHHHTHHHHCC
T ss_pred             CcchhHHHHHHHHhhcCCC
Confidence            3567777788888887765

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0011  Score=24.99  Aligned_cols=21  Identities=19%  Similarity=0.322  Sum_probs=15.9

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      |.|..|++.|.....|..|..
T Consensus         7 ~pCG~CgK~Ftd~~rLr~HEA   27 (53)
T d2eppa1           7 LPCGLCGKVFTDANRLRQHEA   27 (53)
T ss_dssp             CCCTTTCCCCSCHHHHHHHHH
T ss_pred             eeccccccccCCHHHHhHhHH
Confidence            567778888888777777765

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.003  Score=20.94  Aligned_cols=22  Identities=18%  Similarity=0.706  Sum_probs=18.3

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      -|.|.+|++...+...++-|..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvm   23 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVM   23 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEe
Confidence            4778899999888888888876

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00098  Score=25.14  Aligned_cols=26  Identities=23%  Similarity=0.409  Sum_probs=22.7

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcC
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      -++|..|++.|.....|..|...|..
T Consensus         6 l~pCG~CgK~Ftd~~rLr~HEAQHG~   31 (53)
T d2eppa1           6 ILPCGLCGKVFTDANRLRQHEAQHGV   31 (53)
T ss_dssp             CCCCTTTCCCCSCHHHHHHHHHHHTT
T ss_pred             eeeccccccccCCHHHHhHhHHhcCc
Confidence            47899999999999999999887753

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.97  E-value=0.0028  Score=21.38  Aligned_cols=21  Identities=24%  Similarity=0.346  Sum_probs=9.6

Q ss_pred             cchhhhcCcHHHHHHHHHhcC
Q psy6273          37 QCVSYFKTNSALLQHKRKMHD   57 (82)
Q Consensus        37 ~c~~~~~~~~~l~~h~~~~~~   57 (82)
                      .|+..|....-|+.|+-.|+|
T Consensus        10 dC~A~ynk~wkL~AHLckHTG   30 (31)
T d1tf3a1          10 DCGAAYNKNWKLQAHLSKHTG   30 (31)
T ss_dssp             GGCCEESSHHHHHHHHHHHHC
T ss_pred             CcchhhccchhhhHHhhhhcC
Confidence            344444444444444444444

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.88  E-value=0.006  Score=22.85  Aligned_cols=29  Identities=17%  Similarity=0.386  Sum_probs=20.9

Q ss_pred             CCCCccccccchhhhcCcHHHHHHHHHhc
Q psy6273          28 TETKSFACDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        28 ~~~~~~~c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      ..++|-.|+.|+.......+|.+|+...+
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel~h   48 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHHHT
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence            34667778888877777778887777544

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.12  E-value=0.0054  Score=24.66  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=20.8

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      ...|.|+.|++.|.....++   -.....  ..|.|..|+.
T Consensus        12 ~~~y~Cp~C~~~ys~Lda~~---L~d~~~--~~F~C~~C~~   47 (62)
T d1vd4a_          12 RASFKCPVCSSTFTDLEANQ---LFDPMT--GTFRCTFCHT   47 (62)
T ss_dssp             SSEEECSSSCCEEEHHHHHH---HEETTT--TEEBCSSSCC
T ss_pred             CCceECCCCCCCcchhhHHH---hcCcCC--CeEEecCCCC
Confidence            34577777777775555432   222233  4677777754

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=95.03  E-value=0.0038  Score=22.35  Aligned_cols=26  Identities=27%  Similarity=0.600  Sum_probs=17.6

Q ss_pred             CCccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          30 TKSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        30 ~~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      +.-|.|..||...             .|+  .|-+|+.|+.
T Consensus         3 ~~~~vC~vCGyi~-------------~g~--~Pe~CPvCg~   28 (36)
T d1yuza2           3 DKFHLCPICGYIH-------------KGE--DFEKCPICFR   28 (36)
T ss_dssp             CCEEECSSSCCEE-------------ESS--CCSBCTTTCC
T ss_pred             CCEEECCCCCCEe-------------eCC--CCCcCCCCCC
Confidence            3457788887643             344  6788888873

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.0012  Score=27.09  Aligned_cols=24  Identities=29%  Similarity=0.542  Sum_probs=17.5

Q ss_pred             CccccccchhhhcCcHHHHHHHHH
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRK   54 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~   54 (82)
                      ..|-|..|++.|.+...|..|+++
T Consensus        14 gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1          14 GLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             GCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CEEecccccCccCCHHHHHHHHcc
Confidence            346788888888888888777643

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.0066  Score=19.90  Aligned_cols=19  Identities=32%  Similarity=0.595  Sum_probs=11.7

Q ss_pred             cchhhhcCcHHHHHHHHHh
Q psy6273          37 QCVSYFKTNSALLQHKRKM   55 (82)
Q Consensus        37 ~c~~~~~~~~~l~~h~~~~   55 (82)
                      .|.+.|...+++..|+.+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            4566666666666666554

>d2drpa1 g.37.1.1 (A:103-139) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=94.33  E-value=0.034  Score=19.26  Aligned_cols=25  Identities=20%  Similarity=0.490  Sum_probs=19.9

Q ss_pred             CcccCcCCccccCHHHHHhHHHhhC
Q psy6273           3 RYKCHACDVETKTRQALDNHILCVH   27 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~~~~   27 (82)
                      -|.|..|.+.+...+++-+|...+|
T Consensus         8 ~yRC~~C~r~YTHISNFCRHyvtSH   32 (37)
T d2drpa1           8 TYRCKVCSRVYTHISNFCRHYVTSH   32 (37)
T ss_dssp             EEECTTTCCEESSHHHHHHHHHHHS
T ss_pred             EEEeehhhHHHHHHHHHHHHHHhhc
Confidence            4788899999998888888876444

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.0095  Score=24.31  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=19.3

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      |-|..|++.|.+...|..|.+
T Consensus        16 fYCv~C~K~F~se~~l~~H~k   36 (67)
T d1zr9a1          16 HRCLACARYFIDSTNLKTHFR   36 (67)
T ss_dssp             SEETTTTEECSSHHHHHHHTT
T ss_pred             EecccccCccCCHHHHHHHHc
Confidence            679999999999999999975

>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.02  E-value=0.0066  Score=21.83  Aligned_cols=25  Identities=36%  Similarity=0.725  Sum_probs=16.7

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      .-|.|..||..+             .++  .|..|+.|+.
T Consensus         4 ~~~~C~vCG~i~-------------~g~--~P~~CPvCg~   28 (37)
T d1nnqa2           4 KVYICPICGYTA-------------VDE--APEYCPVCGA   28 (37)
T ss_dssp             CEEECTTTCCEE-------------ESC--CCSBCTTTCC
T ss_pred             cEEECCCCCCEe-------------cCC--CCCcCCCCCC
Confidence            347788887643             344  6778888863

>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=93.95  E-value=0.017  Score=18.63  Aligned_cols=15  Identities=27%  Similarity=0.412  Sum_probs=6.2

Q ss_pred             CCccccCHHHHHhHH
Q psy6273           9 CDVETKTRQALDNHI   23 (82)
Q Consensus         9 c~~~~~~~~~l~~h~   23 (82)
                      |+++|.....|..|+
T Consensus         9 c~kafkkhnqlkvhq   23 (28)
T d2j7ja1           9 CGKAFKKHNQLKVHQ   23 (28)
T ss_dssp             CCCEESSHHHHHHHH
T ss_pred             chHHHhhccceEEEe
Confidence            444444444444333

>d1x3ca1 g.37.1.1 (A:8-68) Zinc finger protein 292, ZNF292 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 292, ZNF292
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.067  Score=20.42  Aligned_cols=28  Identities=29%  Similarity=0.447  Sum_probs=17.4

Q ss_pred             CCcccCc--CCccccCHHHHHhHHHhhCCC
Q psy6273           2 TRYKCHA--CDVETKTRQALDNHILCVHTE   29 (82)
Q Consensus         2 k~~~c~~--c~~~~~~~~~l~~h~~~~~~~   29 (82)
                      +||.|-+  |..+|....+|..|...+|..
T Consensus        19 rpyrcvhqgc~aaftiq~nlilhy~avh~s   48 (61)
T d1x3ca1          19 RPYRCVHQGCFAAFTIQQNLILHYQAVHKS   48 (61)
T ss_dssp             CSCBCCSTTCCCBCSSHHHHHHHHHHHSSS
T ss_pred             CceeeeccchhhhhhhhhhHHHHHHHHhhh
Confidence            4566644  666777777777766555544

>d1fu9a_ g.37.1.2 (A:) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.74  E-value=0.07  Score=18.65  Aligned_cols=22  Identities=27%  Similarity=0.470  Sum_probs=13.7

Q ss_pred             cccchhhhcCcHHHHHHHHHhc
Q psy6273          35 CDQCVSYFKTNSALLQHKRKMH   56 (82)
Q Consensus        35 c~~c~~~~~~~~~l~~h~~~~~   56 (82)
                      |..|+-.|...+.+..|.+...
T Consensus        11 C~~CDI~Fn~~~T~~aHKk~YC   32 (36)
T d1fu9a_          11 CSTCDISFNYVKTYLAHKQFYC   32 (36)
T ss_dssp             ETTTTEECSSHHHHHHHHHHTS
T ss_pred             HhhCCceehhHHHHHHHHHhcc
Confidence            6666666666666666655443

>d1wjpa3 g.37.1.1 (A:67-107) Zinc finger protein 295, ZNF295 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 295, ZNF295
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.20  E-value=0.087  Score=18.35  Aligned_cols=21  Identities=19%  Similarity=0.330  Sum_probs=11.6

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      ..|-+|-++|.+.-.+.+|+.
T Consensus         4 ltclecmrtfkssfsiwrhqv   24 (41)
T d1wjpa3           4 LTCLECMRTFKSSFSIWRHQV   24 (41)
T ss_dssp             GEEGGGTEECSSHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhh
Confidence            345555555555555555554

>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 462, ZNF462
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.65  E-value=0.087  Score=21.08  Aligned_cols=22  Identities=27%  Similarity=0.739  Sum_probs=16.9

Q ss_pred             CcccCcCCccccCHHHHHhHHH
Q psy6273           3 RYKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      -|.|.+|+..|.+...|..|..
T Consensus        18 ~yQC~HCd~K~~s~~el~~hl~   39 (75)
T d1x6fa1          18 TYQCKHCDSKLQSTAELTSHLN   39 (75)
T ss_dssp             CEECSSSCCEESSHHHHHHHHH
T ss_pred             eeeechhHHHHhhHHHHHHHHH
Confidence            3678888888888888877765

>d2gmga1 a.4.5.82 (A:1-105) Hypothetical protein PF0610 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF0610-like
domain: Hypothetical protein PF0610
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.50  E-value=0.037  Score=24.50  Aligned_cols=31  Identities=26%  Similarity=0.494  Sum_probs=20.3

Q ss_pred             CccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccccccC
Q psy6273          31 KSFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGEVFRS   74 (82)
Q Consensus        31 ~~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~~f~~   74 (82)
                      .|-.|..||+.|...           -.  +|-.|+.|....-.
T Consensus        66 ~Pp~CrkCGfvFr~~-----------~k--kPSRCP~CKSE~Ie   96 (105)
T d2gmga1          66 KPAQCRKCGFVFKAE-----------IN--IPSRCPKCKSEWIE   96 (105)
T ss_dssp             CCCBBTTTCCBCCCC-----------SS--CCSSCSSSCCCCBC
T ss_pred             eChhhhhcCCeeccc-----------CC--CCCCCCCCCCcccc
Confidence            456788888887321           12  78888888765433

>d1tf3a3 g.37.1.1 (A:71-101) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=90.11  E-value=0.15  Score=16.68  Aligned_cols=22  Identities=23%  Similarity=0.712  Sum_probs=15.0

Q ss_pred             CcccC--cCCccccCHHHHHhHHH
Q psy6273           3 RYKCH--ACDVETKTRQALDNHIL   24 (82)
Q Consensus         3 ~~~c~--~c~~~~~~~~~l~~h~~   24 (82)
                      .|.|.  -|+-.|.++.++..|..
T Consensus         2 nf~cdsd~cdl~fttkanmkkhfn   25 (31)
T d1tf3a3           2 NFTCDSDGCDLRFTTKANMKKHFN   25 (31)
T ss_dssp             CEECSSSSCCCEESSHHHHHHHHH
T ss_pred             CccccCCCcceEEeehHHHHHHHh
Confidence            45554  37778888888877754

>d1lkoa2 g.41.5.1 (A:148-191) Rubrerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubrerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=88.81  E-value=0.027  Score=20.94  Aligned_cols=25  Identities=20%  Similarity=0.555  Sum_probs=15.3

Q ss_pred             ccccccchhhhcCcHHHHHHHHHhcCCCCCeeecCcccc
Q psy6273          32 SFACDQCVSYFKTNSALLQHKRKMHDEFVNLFSCPLCGE   70 (82)
Q Consensus        32 ~~~c~~c~~~~~~~~~l~~h~~~~~~~~~~~~~C~~C~~   70 (82)
                      .|.|..||......            +  .|-.|+.|+.
T Consensus         8 ~W~C~~CGyi~~g~------------~--aP~~CPvC~~   32 (44)
T d1lkoa2           8 KWRCRNCGYVHEGT------------G--APELCPACAH   32 (44)
T ss_dssp             EEEETTTCCEEEEE------------E--CCSBCTTTCC
T ss_pred             EEEcCCCCcEEECC------------C--CCCcCCCCCC
Confidence            46777777654221            2  5778888863

>d1wjva2 g.37.1.2 (A:36-66) Cell growth regulating nucleolar protein LyaR {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Cell growth regulating nucleolar protein LyaR
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.66  E-value=0.1  Score=17.77  Aligned_cols=13  Identities=38%  Similarity=0.764  Sum_probs=9.3

Q ss_pred             eeecCcccccccC
Q psy6273          62 LFSCPLCGEVFRS   74 (82)
Q Consensus        62 ~~~C~~C~~~f~~   74 (82)
                      .+.|..|++.|..
T Consensus         2 ~~sCiDC~~~F~~   14 (31)
T d1wjva2           2 CLSCIDCGKDFWG   14 (31)
T ss_dssp             EEEETTTTEEEEG
T ss_pred             cEEEeecCCccCC
Confidence            3678888888854

>d2yrka1 g.37.1.4 (A:8-55) Zinc finger homeobox protein 4, ZFHX4 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger homeobox protein 4, ZFHX4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.98  E-value=0.041  Score=20.65  Aligned_cols=20  Identities=25%  Similarity=0.567  Sum_probs=13.1

Q ss_pred             eeecCcccccccCccccccc
Q psy6273          62 LFSCPLCGEVFRSHQGYKIH   81 (82)
Q Consensus        62 ~~~C~~C~~~f~~~~~l~~H   81 (82)
                      +-.|..|+..++.+.+++.|
T Consensus         6 ~~eC~lC~vKYs~~~SvrdH   25 (48)
T d2yrka1           6 KPECTLCGVKYSARLSIRDH   25 (48)
T ss_dssp             CSCCTTTTCCCCSSSCHHHH
T ss_pred             cccCcccceeeeeecchHhh
Confidence            35677777777666666554

>d2dlka1 g.37.1.1 (A:8-37) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.31  E-value=0.31  Score=15.83  Aligned_cols=15  Identities=33%  Similarity=0.485  Sum_probs=7.7

Q ss_pred             CCccccCHHHHHhHH
Q psy6273           9 CDVETKTRQALDNHI   23 (82)
Q Consensus         9 c~~~~~~~~~l~~h~   23 (82)
                      |++.|+...-|..|.
T Consensus         8 c~kifsnrqylnhh~   22 (30)
T d2dlka1           8 CGRIFSNRQYLNHHK   22 (30)
T ss_dssp             TCCEESSHHHHHHHH
T ss_pred             chhhhccHHHHHhHH
Confidence            555555555444444

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.29  E-value=0.29  Score=20.76  Aligned_cols=9  Identities=33%  Similarity=0.837  Sum_probs=4.0

Q ss_pred             ccccchhhh
Q psy6273          34 ACDQCVSYF   42 (82)
Q Consensus        34 ~c~~c~~~~   42 (82)
                      .|..|+..|
T Consensus        11 ~C~~C~~~F   19 (88)
T d1wfka_          11 RCYGCAVKF   19 (88)
T ss_dssp             BCTTTCCBC
T ss_pred             cCcccCchh
Confidence            444444444

>d1iroa_ g.41.5.1 (A:) Rubredoxin {Clostridium pasteurianum [TaxId: 1501]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Clostridium pasteurianum [TaxId: 1501]

Probab=83.61  E-value=0.19  Score=19.34  Aligned_cols=16  Identities=25%  Similarity=0.698  Sum_probs=11.1

Q ss_pred             CCCcccCcCCccccCH
Q psy6273           1 MTRYKCHACDVETKTR   16 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~~   16 (82)
                      |+.|.|..|+..+...
T Consensus         1 M~ky~C~~CgyiYd~~   16 (53)
T d1iroa_           1 MKKYTCTVCGYIYNPE   16 (53)
T ss_dssp             CCCEEETTTCCEECTT
T ss_pred             CCCeEcCCCCcEECcc
Confidence            5677888888776543

>d2glia1 g.37.1.1 (A:103-134) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.54  E-value=0.51  Score=15.94  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=12.7

Q ss_pred             cCcCCccccCHHHHHhHHHh
Q psy6273           6 CHACDVETKTRQALDNHILC   25 (82)
Q Consensus         6 c~~c~~~~~~~~~l~~h~~~   25 (82)
                      ...|+..|.+...|..|+.+
T Consensus         6 W~~C~~eFdtQd~LV~Hinn   25 (32)
T d2glia1           6 WDGCSQEFDSQEQLVHHINS   25 (32)
T ss_dssp             BTTCCCBCSCHHHHHHHHHH
T ss_pred             ccccccccCCHHHHHHHccc
Confidence            34566667777667666653

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=83.37  E-value=0.2  Score=18.59  Aligned_cols=15  Identities=33%  Similarity=0.860  Sum_probs=9.3

Q ss_pred             CCCcccCcCCccccC
Q psy6273           1 MTRYKCHACDVETKT   15 (82)
Q Consensus         1 ~k~~~c~~c~~~~~~   15 (82)
                      |+.|.|..|+..+..
T Consensus         1 M~~y~C~~CgyiYd~   15 (45)
T d6rxna_           1 MQKYVCNVCGYEYDP   15 (45)
T ss_dssp             CCCEEETTTCCEECG
T ss_pred             CCCeEeCCCCeEECc
Confidence            456677777766543

>d1m36a_ g.37.1.2 (A:) Monocytic leukemia zinc finger protein Moz {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: Monocytic leukemia zinc finger protein Moz
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.73  E-value=0.58  Score=16.05  Aligned_cols=21  Identities=33%  Similarity=0.610  Sum_probs=11.8

Q ss_pred             cccCcCCccccCHHHHHhHHH
Q psy6273           4 YKCHACDVETKTRQALDNHIL   24 (82)
Q Consensus         4 ~~c~~c~~~~~~~~~l~~h~~   24 (82)
                      |.|+.|-+-..+...+.+|+.
T Consensus         8 yiCEfCLKYmks~~~l~RH~~   28 (33)
T d1m36a_           8 YLCEFCLKYMKSRTILQQHMK   28 (33)
T ss_dssp             EECSSSCCEESCHHHHHHHHH
T ss_pred             eeehhhhhhhCCHHHHHHHHH
Confidence            455555555555555555543

>d1d4ua2 g.39.1.5 (A:1-36) DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
domain: DNA repair factor XPA DNA- and RPA-binding domain, N-terminal subdomain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.43  E-value=0.29  Score=17.03  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=11.3

Q ss_pred             eeecCcccccccCccc
Q psy6273          62 LFSCPLCGEVFRSHQG   77 (82)
Q Consensus        62 ~~~C~~C~~~f~~~~~   77 (82)
                      .-.|.+||+.|..+.-
T Consensus         5 y~~C~eCg~~F~DSYL   20 (36)
T d1d4ua2           5 YVICEECGKEFMDSYL   20 (36)
T ss_dssp             CEECTTTCCEESCSSS
T ss_pred             HHHHHHhCcHHHHHHH
Confidence            4578888888876543