Psyllid ID: psy6338

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP
cccccccccccHHHHHHHHHHHHHccccccccccEEEEEEcccccccccccHHHHHHHHHcccccccccccccccccccccccccccccEEEEEEccccccccccccccccccEEEEEEEEHHHccccccccccc
ccccccccHHHHHHHHHHHHHHHHHHHccccHccEEEEEEcccHHccccccHHHHHHHHHccccHHcEEEcccccccHHcccccccccccEEEEEccccccccccccccccccEEEEEHHEEEHEcccccccccc
mlgnwsfndyyKRDACRMALEfltkppvslpldrlyftyfggsdqyglpcdeeTLDIWLElgvprdhikkegmkcnfwemgstgpcgysseihydmkgepssalARVNADRNDLIEIWNIVFIShkrvsadtivp
MLGNWSFNDYYKRDACRMALEFLtkppvslpLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVfishkrvsadtivp
MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP
***NWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDM*******LARVNADRNDLIEIWNIVFISHKRV*******
MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPS****RVNADRNDLIEIWNIVFISHKRVS******
MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKR********
**GNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVS******
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query135 2.2.26 [Sep-21-2011]
Q9VRJ1 1012 Alanine--tRNA ligase, mit yes N/A 0.977 0.130 0.5 3e-33
Q8CFX8 968 Alanine--tRNA ligase, cyt N/A N/A 0.985 0.137 0.503 3e-32
O01541 968 Alanine--tRNA ligase, cyt yes N/A 0.985 0.137 0.488 1e-31
Q9VLM8 966 Alanine--tRNA ligase, cyt no N/A 0.940 0.131 0.534 3e-31
Q8BGQ7 968 Alanine--tRNA ligase, cyt yes N/A 0.985 0.137 0.511 4e-31
P50475 968 Alanine--tRNA ligase, cyt yes N/A 0.985 0.137 0.511 4e-31
P49588 968 Alanine--tRNA ligase, cyt yes N/A 0.970 0.135 0.522 5e-31
Q5A8K2 969 Alanine--tRNA ligase OS=C N/A N/A 0.918 0.127 0.523 1e-30
Q5RC02 968 Alanine--tRNA ligase, cyt yes N/A 0.970 0.135 0.522 1e-30
Q14CH7 980 Alanine--tRNA ligase, mit no N/A 0.866 0.119 0.492 4e-30
>sp|Q9VRJ1|SYAM_DROME Alanine--tRNA ligase, mitochondrial OS=Drosophila melanogaster GN=Aats-ala-m PE=2 SV=1 Back     alignment and function desciption
 Score =  140 bits (353), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/136 (50%), Positives = 85/136 (62%), Gaps = 4/136 (2%)

Query: 1   MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
           MLGNWSF DY+KR+AC MALE L + P ++   RLY TYF G    G+P D E  +IW  
Sbjct: 103 MLGNWSFGDYFKREACAMALELL-RGPYNIDPGRLYVTYFAGDKVLGIPADLECFEIWRS 161

Query: 61  LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALAR---VNADRNDLIEI 117
           LG P   I   G   NFWEMG+TGPCG  +EIH D + +  S   R   VNA R+DL E+
Sbjct: 162 LGFPASRILPFGCADNFWEMGATGPCGPCTEIHIDHRPDLGSVEQRAKLVNAGRSDLTEL 221

Query: 118 WNIVFISHKRVSADTI 133
           WN+VFI + R +  +I
Sbjct: 222 WNLVFIQYNRHADGSI 237
Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged tRNA(Ala) via its editing domain.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 7
>sp|Q8CFX8|SYAC_MESAU Alanine--tRNA ligase, cytoplasmic OS=Mesocricetus auratus GN=Aars PE=2 SV=1 Back     alignment and function description
>sp|O01541|SYAC_CAEEL Alanine--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=aars-2 PE=2 SV=1 Back     alignment and function description
>sp|Q9VLM8|SYAC_DROME Alanine--tRNA ligase, cytoplasmic OS=Drosophila melanogaster GN=Aats-ala PE=2 SV=1 Back     alignment and function description
>sp|Q8BGQ7|SYAC_MOUSE Alanine--tRNA ligase, cytoplasmic OS=Mus musculus GN=Aars PE=1 SV=1 Back     alignment and function description
>sp|P50475|SYAC_RAT Alanine--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Aars PE=1 SV=3 Back     alignment and function description
>sp|P49588|SYAC_HUMAN Alanine--tRNA ligase, cytoplasmic OS=Homo sapiens GN=AARS PE=1 SV=2 Back     alignment and function description
>sp|Q5A8K2|SYA_CANAL Alanine--tRNA ligase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=ALA1 PE=1 SV=1 Back     alignment and function description
>sp|Q5RC02|SYAC_PONAB Alanine--tRNA ligase, cytoplasmic OS=Pongo abelii GN=AARS PE=2 SV=1 Back     alignment and function description
>sp|Q14CH7|SYAM_MOUSE Alanine--tRNA ligase, mitochondrial OS=Mus musculus GN=Aars2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query135
71895377 816 probable alanyl-tRNA synthetase, mitocho 0.992 0.164 0.533 2e-36
224047577 986 PREDICTED: alanine--tRNA ligase, mitocho 0.992 0.135 0.525 5e-36
348545288 1039 PREDICTED: alanyl-tRNA synthetase, mitoc 0.925 0.120 0.559 9e-36
49119610 1005 LOC443692 protein, partial [Xenopus laev 0.940 0.126 0.542 2e-34
360043626 980 putative alanyl-tRNA synthetase [Schisto 0.985 0.135 0.540 3e-34
256077790 980 alanyl-tRNA synthetase [Schistosoma mans 0.985 0.135 0.540 3e-34
326678670 1001 PREDICTED: alanyl-tRNA synthetase, mitoc 0.970 0.130 0.541 1e-33
327262296 988 PREDICTED: alanyl-tRNA synthetase, mitoc 0.933 0.127 0.527 2e-33
410917664 975 PREDICTED: alanine--tRNA ligase, mitocho 0.925 0.128 0.527 3e-33
126632676 917 novel protein similar to vertebrate amin 0.970 0.142 0.533 4e-33
>gi|71895377|ref|NP_001026227.1| probable alanyl-tRNA synthetase, mitochondrial [Gallus gallus] gi|53136426|emb|CAG32542.1| hypothetical protein RCJMB04_28n18 [Gallus gallus] Back     alignment and taxonomy information
 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 72/135 (53%), Positives = 88/135 (65%), Gaps = 1/135 (0%)

Query: 1   MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
           MLGNWSF DY+K +AC MA E LT+    +P DRLY TYFGG    GL  DEE  D+WL 
Sbjct: 125 MLGNWSFGDYFKEEACSMAWELLTEV-YKIPKDRLYVTYFGGDSSLGLNADEECRDVWLS 183

Query: 61  LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
           LGVP +H+    MK NFWEMG TGPCG  +EIHYD  G   +A A VN    D++EIWN+
Sbjct: 184 LGVPANHVLPFPMKDNFWEMGDTGPCGPCTEIHYDHVGGGRNASALVNQGSPDVVEIWNL 243

Query: 121 VFISHKRVSADTIVP 135
           VF+ + R     ++P
Sbjct: 244 VFMQYSREVDGNLLP 258

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota
>gi|224047577|ref|XP_002187191.1| PREDICTED: alanine--tRNA ligase, mitochondrial [Taeniopygia guttata] Back     alignment and taxonomy information
>gi|348545288|ref|XP_003460112.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|49119610|gb|AAH73734.1| LOC443692 protein, partial [Xenopus laevis] Back     alignment and taxonomy information
>gi|360043626|emb|CCD81172.1| putative alanyl-tRNA synthetase [Schistosoma mansoni] Back     alignment and taxonomy information
>gi|256077790|ref|XP_002575183.1| alanyl-tRNA synthetase [Schistosoma mansoni] Back     alignment and taxonomy information
>gi|326678670|ref|XP_001332388.4| PREDICTED: alanyl-tRNA synthetase, mitochondrial [Danio rerio] Back     alignment and taxonomy information
>gi|327262296|ref|XP_003215961.1| PREDICTED: alanyl-tRNA synthetase, mitochondrial-like [Anolis carolinensis] Back     alignment and taxonomy information
>gi|410917664|ref|XP_003972306.1| PREDICTED: alanine--tRNA ligase, mitochondrial-like [Takifugu rubripes] Back     alignment and taxonomy information
>gi|126632676|emb|CAM56636.1| novel protein similar to vertebrate aminolevulinate delta-synthase 1 (ALAS1) [Danio rerio] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query135
UNIPROTKB|F1N8U6 816 AARS2 "Uncharacterized protein 0.992 0.164 0.533 1e-34
UNIPROTKB|F1NC50 991 AARS2 "Uncharacterized protein 0.992 0.135 0.533 1.7e-34
ZFIN|ZDB-GENE-041008-213 1022 aars2 "alanyl-tRNA synthetase 0.940 0.124 0.558 2.9e-34
FB|FBgn0027094 966 Aats-ala "Alanyl-tRNA syntheta 0.940 0.131 0.534 8.9e-31
ZFIN|ZDB-GENE-030131-3663 991 aars "alanyl-tRNA synthetase" 0.985 0.134 0.518 2e-30
UNIPROTKB|F1P5J5 916 AARS "Uncharacterized protein" 0.985 0.145 0.503 2.7e-30
UNIPROTKB|P49588 968 AARS "Alanine--tRNA ligase, cy 0.970 0.135 0.522 6.4e-30
MGI|MGI:2384560 968 Aars "alanyl-tRNA synthetase" 0.985 0.137 0.511 6.4e-30
CGD|CAL0001447 969 ALA1 [Candida albicans (taxid: 0.940 0.131 0.522 6.4e-30
UNIPROTKB|Q5A8K2 969 ALA1 "Alanine--tRNA ligase" [C 0.940 0.131 0.522 6.4e-30
UNIPROTKB|F1N8U6 AARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 385 (140.6 bits), Expect = 1.0e-34, P = 1.0e-34
 Identities = 72/135 (53%), Positives = 88/135 (65%)

Query:     1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
             MLGNWSF DY+K +AC MA E LT+    +P DRLY TYFGG    GL  DEE  D+WL 
Sbjct:   125 MLGNWSFGDYFKEEACSMAWELLTEV-YKIPKDRLYVTYFGGDSSLGLNADEECRDVWLS 183

Query:    61 LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
             LGVP +H+    MK NFWEMG TGPCG  +EIHYD  G   +A A VN    D++EIWN+
Sbjct:   184 LGVPANHVLPFPMKDNFWEMGDTGPCGPCTEIHYDHVGGGRNASALVNQGSPDVVEIWNL 243

Query:   121 VFISHKRVSADTIVP 135
             VF+ + R     ++P
Sbjct:   244 VFMQYSREVDGNLLP 258
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0005524 "ATP binding" evidence=IEA
GO:0004813 "alanine-tRNA ligase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0033108 "mitochondrial respiratory chain complex assembly" evidence=IEA
GO:0070143 "mitochondrial alanyl-tRNA aminoacylation" evidence=IEA
UNIPROTKB|F1NC50 AARS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041008-213 aars2 "alanyl-tRNA synthetase 2, mitochondrial (putative)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0027094 Aats-ala "Alanyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-3663 aars "alanyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1P5J5 AARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P49588 AARS "Alanine--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2384560 Aars "alanyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
CGD|CAL0001447 ALA1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|Q5A8K2 ALA1 "Alanine--tRNA ligase" [Candida albicans SC5314 (taxid:237561)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P36428SYA_ARATH6, ., 1, ., 1, ., 70.50370.97770.1316yesN/A
Q5RC02SYAC_PONAB6, ., 1, ., 1, ., 70.52230.97030.1353yesN/A
Q8BGQ7SYAC_MOUSE6, ., 1, ., 1, ., 70.51110.98510.1373yesN/A
P50475SYAC_RAT6, ., 1, ., 1, ., 70.51110.98510.1373yesN/A
Q5AQL1SYA_EMENI6, ., 1, ., 1, ., 70.50390.92590.1300yesN/A
P49588SYAC_HUMAN6, ., 1, ., 1, ., 70.52230.97030.1353yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
PLN02900 936 PLN02900, PLN02900, alanyl-tRNA synthetase 2e-47
PRK00252 865 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed 6e-44
cd00673232 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS 2e-43
pfam01411 551 pfam01411, tRNA-synt_2c, tRNA synthetases class II 7e-39
COG0013 879 COG0013, AlaS, Alanyl-tRNA synthetase [Translation 2e-38
TIGR00344 851 TIGR00344, alaS, alanine--tRNA ligase 3e-33
PRK01584 594 PRK01584, PRK01584, alanyl-tRNA synthetase; Provis 6e-32
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase Back     alignment and domain information 
 Score =  162 bits (412), Expect = 2e-47
 Identities = 67/127 (52%), Positives = 78/127 (61%), Gaps = 5/127 (3%)

Query: 1   MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
           MLGNWSF DY+K++A   A E LTK    LP DRLY TYFGG +      D+E   IWL+
Sbjct: 106 MLGNWSFGDYFKKEAIGWAWELLTKV-YGLPADRLYATYFGGDE--KQAPDDEARAIWLD 162

Query: 61  LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNI 120
             +P + +   G K NFWEMG TGPCG  SEIHYD  GE  +A   VN D    IEIWN+
Sbjct: 163 Y-LPEERVLPFGCKDNFWEMGDTGPCGPCSEIHYDRIGERDAADL-VNNDDPRFIEIWNL 220

Query: 121 VFISHKR 127
           VFI   R
Sbjct: 221 VFIQFNR 227

Length = 936
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A) Back     alignment and domain information
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase Back     alignment and domain information
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 135
KOG0188|consensus 895 100.0
cd00673232 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II 100.0
PRK01584 594 alanyl-tRNA synthetase; Provisional 100.0
PLN02900 936 alanyl-tRNA synthetase 100.0
TIGR00344 851 alaS alanine--tRNA ligase. The model describes ala 100.0
PRK00252 865 alaS alanyl-tRNA synthetase; Reviewed 100.0
COG0013 879 AlaS Alanyl-tRNA synthetase [Translation, ribosoma 100.0
PF01411 552 tRNA-synt_2c: tRNA synthetases class II (A); Inter 100.0
PRK13902 900 alaS alanyl-tRNA synthetase; Provisional 100.0
TIGR03683 902 A-tRNA_syn_arch alanyl-tRNA synthetase. This famil 100.0
PTZ00450113 macrophage migration inhibitory factor-like protei 91.67
KOG1759|consensus115 90.02
PTZ00397116 macrophage migration inhibition factor-like protei 86.68
PF0142220 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000 86.54
PF01187114 MIF: Macrophage migration inhibitory factor (MIF); 81.55
>KOG0188|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.5e-67  Score=479.43  Aligned_cols=133  Identities=55%  Similarity=0.985  Sum_probs=130.1

Q ss_pred             CCCccccccccHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHhcCCCCCCeeecCCccCccCC
Q psy6338           1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLELGVPRDHIKKEGMKCNFWEM   80 (135)
Q Consensus         1 MLGNfSfGdYfK~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~~gv~~~rI~~~~~~dNfW~~   80 (135)
                      ||||||||||||+|||.|||||||++ ||||++|||||||+||+++||++|.||++||+++|||++||++++.+||||+|
T Consensus        91 MlGNWSFGdYfK~Eac~~AwelLt~v-ygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~~Gvp~srILp~~~kDNFWEM  169 (895)
T KOG0188|consen   91 MLGNWSFGDYFKEEACAWAWELLTFV-YGIPTDRLYVTYFGGDEKLGLEPDLECREIWNELGVPDSRILPFGMKDNFWEM  169 (895)
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHHHh-hcCCCceEEEEEecCccccCCCCCcHHHHHHHHcCCChhhccCCccccchhhh
Confidence            99999999999999999999999999 99999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCceeEEeecCCCCCcccccCCCCCCcEEEEeeccccccccCCCCccCC
Q psy6338          81 GSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP  135 (135)
Q Consensus        81 G~~GPCGPcSEI~yd~~~~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~dG~l~p  135 (135)
                      |+||||||||||||||.++ +.++.++|.|++..+||||||||||||++||+|.|
T Consensus       170 GdtGPCGPCtEIHyDriG~-r~a~~LVN~ddp~v~EiWNlVFiq~NRe~dGsL~p  223 (895)
T KOG0188|consen  170 GDTGPCGPCTEIHYDRIGG-RDAVKLVNHDDPDVLEIWNIVFIQYNREADGSLKP  223 (895)
T ss_pred             cCCCCCCcchhhhhhhhcC-cchHHHhcCCCcCceeeeeeeeeeeccccCCcccc
Confidence            9999999999999999877 77788999999999999999999999999999986

>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain Back     alignment and domain information
>PRK01584 alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02900 alanyl-tRNA synthetase Back     alignment and domain information
>TIGR00344 alaS alanine--tRNA ligase Back     alignment and domain information
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed Back     alignment and domain information
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>PRK13902 alaS alanyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase Back     alignment and domain information
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional Back     alignment and domain information
>KOG1759|consensus Back     alignment and domain information
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional Back     alignment and domain information
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
1yfr_A 465 Crystal Structure Of Alanyl-Trna Synthetase In Comp 7e-19
3htz_A 464 Crystal Structure Of The Catalytic Fragment Of Alan 8e-19
1riq_A 465 The Crystal Structure Of The Catalytic Fragment Of 2e-18
3hxu_A 441 Crystal Structure Of Catalytic Fragment Of E. Coli 9e-18
3hxz_A 441 Crystal Structure Of Catalytic Fragment Of E. Coli 1e-17
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex With Atp And Magnesium Length = 465 Back     alignment and structure 
Iteration: 1

 Score = 89.0 bits (219), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 53/136 (38%), Positives = 77/136 (56%), Gaps = 18/136 (13%)
Query: 1   MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
           MLGN+SF DY+K++A   A EF+T+  + LP ++LY + +          DEE   IW E
Sbjct: 93  MLGNFSFGDYFKKEAIEYAWEFVTEV-LKLPKEKLYVSVY--------KDDEEAYRIWNE 143
Query: 61  -LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
            +G+P + I + G + NFW+MG  GPCG SSEI+ D +GE      R        +EIWN
Sbjct: 144 HIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVD-RGEEYEGDER-------YLEIWN 195
Query: 120 IVFISHKRVSADTIVP 135
           +VF+ + R     + P
Sbjct: 196 LVFMQYNRDENGVLTP 211
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna Synthetase In Complex With L-Serine: Re-Refined Length = 464 Back     alignment and structure
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The Alanyl-Trna Synthetase Length = 465 Back     alignment and structure
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars In Complex With Alasa Length = 441 Back     alignment and structure
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars G237a In Complex With Alasa Length = 441 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query135
3hy0_A 441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 1e-40
1yfs_A 465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 2e-39
2ztg_A 739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 2e-17
2zze_A 752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 8e-07
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Length = 441 Back     alignment and structure
 Score =  139 bits (352), Expect = 1e-40
 Identities = 58/149 (38%), Positives = 76/149 (51%), Gaps = 26/149 (17%)

Query: 1   MLGNWSFNDYYKRDACRMALEFLTKPPV-SLPLDRLYFTYFGGSDQYGLPCDEETLDIWL 59
           MLGN+SF DY+K DA   A   LT     +LP +RL+ T +          D+E  +IW 
Sbjct: 92  MLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVY--------ESDDEAYEIWE 143

Query: 60  -ELGVPRDHIKKEGMKC-------NFWEMGSTGPCGYSSEIHYDM-----KGEPSSALAR 106
            E+G+PR+ I + G          NFW+MG TGPCG  +EI YD       G P S    
Sbjct: 144 KEVGIPRERIIRIGDNKGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGS---- 199

Query: 107 VNADRNDLIEIWNIVFISHKRVSADTIVP 135
              D +  IEIWNIVF+   R +  T+ P
Sbjct: 200 PEEDGDRYIEIWNIVFMQFNRQADGTMEP 228
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Length = 465 Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Length = 739 Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Length = 752 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query135
3hy0_A 441 Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
1yfs_A 465 Alanyl-tRNA synthetase; alpha-beta fold, helix-loo 100.0
2zze_A 752 Alanyl-tRNA synthetase; ligase, hydrolase; HET: ML 100.0
2ztg_A 739 Alanyl-tRNA synthetase; class-II aminoacyl-tRNA sy 100.0
4dh4_A114 MIF; trimer, isomerase; 1.82A {Toxoplasma gondii} 87.45
3b64_A112 Macrophage migration inhibitory factor-like protei 85.63
3fwu_A133 Macrophage migration inhibitory factor-like protei 84.71
3djh_A114 Macrophage migration inhibitory factor; homotrimer 84.13
3kan_A117 D-dopachrome tautomerase; immune response, cytokin 83.21
1hfo_A113 Migration inhibitory factor; tautomerase; 1.65A {T 83.02
2xcz_A115 Possible ATLS1-like light-inducible protein; cytok 82.99
2wkb_A125 Macrophage migration inhibitory factor; cytokine; 82.5
1uiz_A115 MIF, macrophage migration inhibitory factor; cytok 82.02
2os5_A119 Acemif; macrophage migration inhibitory factor, cy 81.95
3fwt_A133 Macrophage migration inhibitory factor-like protei 81.82
3t5s_A135 Gilaa.00834.A, macrophage migration inhibitory fac 80.48
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* Back     alignment and structure
Probab=100.00  E-value=5.1e-66  Score=448.75  Aligned_cols=126  Identities=44%  Similarity=0.808  Sum_probs=116.4

Q ss_pred             CCCccccccccHHHHHHHHHHhhc--CCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHh-cCCCCCCeeecC-----
Q psy6338           1 MLGNWSFNDYYKRDACRMALEFLT--KPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE-LGVPRDHIKKEG-----   72 (135)
Q Consensus         1 MLGNfSfGdYfK~eAi~~awefLT--~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~-~gv~~~rI~~~~-----   72 (135)
                      ||||||||||||+|||+|||||||  ++ ||||++|||||||.        .|+||++||++ +|||++||++++     
T Consensus        92 MLGNfSFGDYFK~eAI~~Awe~LT~~~~-lgl~~erL~vTvf~--------~D~Ea~~iW~~~~Gvp~~rI~~~g~~~~~  162 (441)
T 3hy0_A           92 MLGNFSFGDYFKLDAILFAWLLLTSEKW-FALPKERLWVTVYE--------SDDEAYEIWEKEVGIPRERIIRIGDNKGA  162 (441)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHHHCTTT-TCCCGGGEEEEEET--------TCHHHHHHHHHTTCCCGGGEEEECSTTSB
T ss_pred             eccccccchhhHHHHHHHHHHHhCCCCc-cCCCHHHeEEEEeC--------CCHHHHHHHHHccCCCHHHeeecCccccc
Confidence            999999999999999999999999  66 99999999999997        49999999998 799999999999     


Q ss_pred             --CccCccCCCCCCCCCCceeEEeecCCCCCc-ccccCCCCCCcEEEEeeccccccccCCCCccCC
Q psy6338          73 --MKCNFWEMGSTGPCGYSSEIHYDMKGEPSS-ALARVNADRNDLIEIWNIVFISHKRVSADTIVP  135 (135)
Q Consensus        73 --~~dNfW~~G~~GPCGPcSEI~yd~~~~~~~-~~~~~~~~~~r~lEIWNlVFmqy~r~~dG~l~p  135 (135)
                        .+||||+||+|||||||||||||+|+...+ +.+.++++++|||||||||||||+|+++|+|+|
T Consensus       163 ~y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~g~l~p  228 (441)
T 3hy0_A          163 PYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADGTMEP  228 (441)
T ss_dssp             TTBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTTSCEEE
T ss_pred             cccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCCCcccc
Confidence              899999999999999999999999865322 234678999999999999999999999999865
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A Back     alignment and structure
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A* Back     alignment and structure
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus} Back     alignment and structure
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii} Back     alignment and structure
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major} Back     alignment and structure
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major} Back     alignment and structure
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ... Back     alignment and structure
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A* Back     alignment and structure
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3 Back     alignment and structure
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus} Back     alignment and structure
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A* Back     alignment and structure
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3 Back     alignment and structure
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A* Back     alignment and structure
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major} Back     alignment and structure
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 135
d1riqa2236 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) 3e-21
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Length = 236 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

 Score = 83.1 bits (205), Expect = 3e-21
 Identities = 50/136 (36%), Positives = 73/136 (53%), Gaps = 18/136 (13%)

Query: 1   MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE 60
           MLGN+SF DY+K++A   A EF+T+  + LP ++LY + +          DEE   IW E
Sbjct: 92  MLGNFSFGDYFKKEAIEYAWEFVTEV-LKLPKEKLYVSVY--------KDDEEAYRIWNE 142

Query: 61  -LGVPRDHIKKEGMKCNFWEMGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWN 119
            +G+P + I + G + NFW+MG  GPCG SSEI+ D                   +EIWN
Sbjct: 143 HIGIPSERIWRLGEEDNFWQMGDVGPCGPSSEIYVDRG--------EEYEGDERYLEIWN 194

Query: 120 IVFISHKRVSADTIVP 135
           +VF+ + R     + P
Sbjct: 195 LVFMQYNRDENGVLTP 210

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query135
d1riqa2236 Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [ 100.0
d1dpta_117 D-dopachrome tautomerase {Human (Homo sapiens) [Ta 84.34
d1uiza_115 Microphage migration inhibition factor (MIF) {Afri 84.0
d1hfoa_113 Microphage migration inhibition factor (MIF) {Tric 83.26
d2gdga1114 Microphage migration inhibition factor (MIF) {Mous 83.11
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Alanyl-tRNA synthetase (AlaRS)
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=3.9e-62  Score=395.19  Aligned_cols=118  Identities=43%  Similarity=0.835  Sum_probs=110.7

Q ss_pred             CCCccccccccHHHHHHHHHHhhcCCCCCCCCCceEEEEecCCCCCCCCCCHHHHHHHHh-cCCCCCCeeecCCccCccC
Q psy6338           1 MLGNWSFNDYYKRDACRMALEFLTKPPVSLPLDRLYFTYFGGSDQYGLPCDEETLDIWLE-LGVPRDHIKKEGMKCNFWE   79 (135)
Q Consensus         1 MLGNfSfGdYfK~eAi~~awefLT~~~lgl~~~rL~vTv~~gd~~~g~~~D~Ea~~iW~~-~gv~~~rI~~~~~~dNfW~   79 (135)
                      ||||||||||||+|||.|||||||++ |||||+|||||||.        .|+||++||++ +|||++||++++.+||||+
T Consensus        92 MLGn~SFgdYfK~eai~~awe~lt~~-l~l~~~rl~vtv~~--------~D~e~~~~w~~~~gi~~~rI~~~~~~dNfW~  162 (236)
T d1riqa2          92 MLGNFSFGDYFKKEAIEYAWEFVTEV-LKLPKEKLYVSVYK--------DDEEAYRIWNEHIGIPSERIWRLGEEDNFWQ  162 (236)
T ss_dssp             EEEEEESSSCCHHHHHHHHHHHHHHT-SCCCGGGEEEEEET--------TCHHHHHHHHTTTCCCGGGEEEECHHHHEEE
T ss_pred             hccccccCchhHHHHHHHHHHHHHHH-hccCccceEEEeec--------CcHHHHHHHHhhcCcccccceecCCCCCccc
Confidence            99999999999999999999999999 99999999999997        59999999996 8999999999999999999


Q ss_pred             CCCCCCCCCceeEEeecCCCCCcccccCCCCCCcEEEEeeccccccccCCCCccCC
Q psy6338          80 MGSTGPCGYSSEIHYDMKGEPSSALARVNADRNDLIEIWNIVFISHKRVSADTIVP  135 (135)
Q Consensus        80 ~G~~GPCGPcSEI~yd~~~~~~~~~~~~~~~~~r~lEIWNlVFmqy~r~~dG~l~p  135 (135)
                      ||++||||||||||||+++..        .+++|||||||||||||+|+++|+|.|
T Consensus       163 ~g~~GpcGPcsEi~yd~g~~~--------~~~~r~lEIwNlVFmqy~~~~~G~~~~  210 (236)
T d1riqa2         163 MGDVGPCGPSSEIYVDRGEEY--------EGDERYLEIWNLVFMQYNRDENGVLTP  210 (236)
T ss_dssp             SSSSEEEEEEEEEEEECCTTS--------CHHHHEEEEEEEEEEEEEECTTSCEEE
T ss_pred             cCCCCCCCcceeEEEcccccc--------CCCCceeeeeeeeheeeeecCCCcccc
Confidence            999999999999999997552        335799999999999999999999864
>d1dpta_ d.80.1.3 (A:) D-dopachrome tautomerase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uiza_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1hfoa_ d.80.1.3 (A:) Microphage migration inhibition factor (MIF) {Trichinella spiralis [TaxId: 6334]} Back     information, alignment and structure
>d2gdga1 d.80.1.3 (A:1-114) Microphage migration inhibition factor (MIF) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure