Psyllid ID: psy6348

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330---
Protein Sequence
KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTSTFSSTAFSLVTQDITNVTSSTMS
Secondary Structure (PSIPRED)
cccEEEEcccccccHHHHcccccEEEEEcccccccccHHHHHHcccEEEcccccHHHHHHHHHHHHHHHHHcccHHHcHHHHccccccccccEEEEcccEEEEEcccHHHHHHHHHHHHcccEEEEEcccccHHHHHHcccEEEcHHHHHccccEEEEcccccccccccccHHHHHccccccEEEEccccccccHHHHHHHHHcccEEEEEccccccccccccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccHHHHHHcccEEEEEcccccccccHHHHHcccEEEEEcccccHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccEEEEEEcccEEEEEcccHHHHHHHHHHHccccEEEEEcccccHHHHHHcccEEEcHHHHHHHccEEEEcccccccccccEcHHHHHHccccEEEEEcccHHHEcHHHHHHHHHHccEEEEEEccccccccccccHHHccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHccccccHcHccEccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccHccccccccc
Coil and Loop (DISEMBL)
kydglvvrsdTKVTAEVLQAsnlqvvgragtgvdnidltaatRKGVLVlnapggnfiSACELTCSLISALSrnvpqgcqslkegkwdrklytgtelygkTLAVLGLGRIGREVALRMQAFGmkvigfdpmvsvEDAAKLNIAslglediwpladyitvhtplipqtknLINAEVLKKCKKGVRVvnvarggivdenalldslkcghcggaaldvfceeppkseqtfelikhpkvivtphlgastKEAQIRVAVEIAEQFIALAntnpqytsiqgvlnapalaasrnpentSWISLARSLGKISSQLLQTSTFSSTAFSLVTQDITNVTSSTMS
Flexible Loop (DISEMBL)
kydglvvrsdtkvtaevlqasnlqvvgragtgvDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQgcqslkegkwdrklytgtelygktlavLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTStfsstafslvtqditnvtsstms
Low Complexity Region (SEG)
KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKIssqllqtstfsstafslVTQDITNVTSSTMS
Disordered region (IsUnstruct)
**********TKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP***EQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALA*******TSWISLARSLGKISSQLLQTSTFSSTAFSLVTQ***********
Disordered Region (DISOPRED)
KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTSTFSSTAFSLVTQDITNVTSSTMS
Disordered Region (DISEMBL)
KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTSTFSSTAFSLVTQDITNVTSSTMS
Disordered Region (DISPRO)
KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTSTFSSTAFSLVTQDITNVT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTSTFSSTAFSLVTQDITNVTSSTMS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	333	2.2.26 [Sep-21-2011]
O08651	533	D-3-phosphoglycerate dehy	yes	N/A	0.879	0.549	0.598	1e-99
Q61753	533	D-3-phosphoglycerate dehy	yes	N/A	0.879	0.549	0.591	3e-99
A5A6P1	533	D-3-phosphoglycerate dehy	yes	N/A	0.879	0.549	0.591	6e-99
Q60HD7	533	D-3-phosphoglycerate dehy	N/A	N/A	0.879	0.549	0.594	6e-99
O43175	533	D-3-phosphoglycerate dehy	yes	N/A	0.879	0.549	0.591	7e-99
Q5R7M2	533	D-3-phosphoglycerate dehy	yes	N/A	0.879	0.549	0.588	2e-98
A5GFY8	533	D-3-phosphoglycerate dehy	yes	N/A	0.879	0.549	0.581	3e-97
Q5EAD2	533	D-3-phosphoglycerate dehy	yes	N/A	0.879	0.549	0.578	2e-96
P35136	525	D-3-phosphoglycerate dehy	yes	N/A	0.900	0.571	0.487	8e-80
O04130	624	D-3-phosphoglycerate dehy	yes	N/A	0.894	0.477	0.480	2e-74

>sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3

 Score =  363 bits (931), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 180/301 (59%), Positives = 219/301 (72%), Gaps = 8/301 (2%)

Query: 3   DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKGVLV+N P GN +SA E
Sbjct: 49  EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAE 108

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC ++  L+R +PQ   S+K+GKWDRK + GTEL GKTL +LGLGRIGREVA RMQAFG
Sbjct: 109 LTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFG 168

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK +G+DP++S E AA   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct: 169 MKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKG 228

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct: 229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLG 285

Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
           ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct: 286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query: 302 I 302
           +
Sbjct: 342 L 342

Rattus norvegicus (taxid: 10116)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5

>sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3

 Score =  362 bits (928), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 178/301 (59%), Positives = 219/301 (72%), Gaps = 8/301 (2%)

Query: 3   DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct: 49  EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC +I  L+R +PQ   S+K+GKWDRK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct: 109 LTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 168

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK +G+DP++S E AA   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct: 169 MKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKG 228

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct: 229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLG 285

Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
           ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA ++G 
Sbjct: 286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEAMGT 341

Query: 302 I 302
           +
Sbjct: 342 L 342

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|A5A6P1|SERA_PANTR D-3-phosphoglycerate dehydrogenase OS=Pan troglodytes GN=PHGDH PE=2 SV=1

 Score =  360 bits (925), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 178/301 (59%), Positives = 219/301 (72%), Gaps = 8/301 (2%)

Query: 3   DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct: 49  EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct: 109 LTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 168

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK IG+DP++S E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct: 169 MKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKG 228

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct: 229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLG 285

Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
           ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct: 286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query: 302 I 302
           +
Sbjct: 342 L 342

Pan troglodytes (taxid: 9598)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4

 Score =  360 bits (925), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 179/301 (59%), Positives = 219/301 (72%), Gaps = 8/301 (2%)

Query: 3   DGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKGVLV+N P GN +SA E
Sbjct: 49  EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAE 108

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct: 109 LTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 168

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK IG+DP++S E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct: 169 MKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKG 228

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct: 229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLG 285

Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
           ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct: 286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLAGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query: 302 I 302
           +
Sbjct: 342 L 342

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|O43175|SERA_HUMAN D-3-phosphoglycerate dehydrogenase OS=Homo sapiens GN=PHGDH PE=1 SV=4

 Score =  360 bits (924), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 178/301 (59%), Positives = 219/301 (72%), Gaps = 8/301 (2%)

Query: 3   DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct: 49  EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct: 109 LTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 168

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK IG+DP++S E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct: 169 MKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKG 228

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct: 229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPHLG 285

Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
           ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct: 286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query: 302 I 302
           +
Sbjct: 342 L 342

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q5R7M2|SERA_PONAB D-3-phosphoglycerate dehydrogenase OS=Pongo abelii GN=PHGDH PE=2 SV=3

 Score =  359 bits (921), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 177/301 (58%), Positives = 219/301 (72%), Gaps = 8/301 (2%)

Query: 3   DGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct: 49  EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA+RMQ+ G
Sbjct: 109 LTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAIRMQSLG 168

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK IG+DP++S E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct: 169 MKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKG 228

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct: 229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRGR---ALVDHENVISCPHLG 285

Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
           ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct: 286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query: 302 I 302
           +
Sbjct: 342 L 342

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|A5GFY8|SERA_PIG D-3-phosphoglycerate dehydrogenase OS=Sus scrofa GN=PHGDH PE=3 SV=1

 Score =  355 bits (910), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 175/301 (58%), Positives = 218/301 (72%), Gaps = 8/301 (2%)

Query: 3   DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVT++V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct: 49  EGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GK L +LGLGRIGREVA RMQ+FG
Sbjct: 109 LTCGMILCLARQIPQATASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFG 168

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK IG+DP+++ E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N      CKKG
Sbjct: 169 MKTIGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKG 228

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H KVI  PHLG
Sbjct: 229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVDHEKVISCPHLG 285

Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
           AST+EAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct: 286 ASTREAQSRCGEEIAIQFVDMVKGR----SLAGVVNAQALTSAFSPHTKPWIGLAEALGA 341

Query: 302 I 302
           +
Sbjct: 342 L 342

Sus scrofa (taxid: 9823)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3

 Score =  352 bits (904), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/301 (57%), Positives = 217/301 (72%), Gaps = 8/301 (2%)

Query: 3   DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVT++++ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct: 49  EGLIVRSATKVTSDIINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GK L +LGLGRIGREVA RMQ+FG
Sbjct: 109 LTCGMIMCLARQIPQAAASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFG 168

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK IG+DP++S E +A   +  L LE IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct: 169 MKTIGYDPIISPEVSASFGVQQLPLEQIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKG 228

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           V VVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct: 229 VCVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVNHENVISCPHLG 285

Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
           ASTKEAQ R   EIA QF+ +        ++ GV+NA ALA+   P    W+SLA++LG 
Sbjct: 286 ASTKEAQSRCGEEIALQFVDMVKGK----ALAGVVNAQALASIFCPHTKPWVSLAKALGA 341

Query: 302 I 302
           +
Sbjct: 342 L 342

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3

 Score =  297 bits (760), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 150/308 (48%), Positives = 209/308 (67%), Gaps = 8/308 (2%)

Query: 2   YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           +D L+VRS TKVT ++  + ++L++VGRAG GVDNID+  AT+ GV+V+NAP GN IS  
Sbjct: 41  FDALLVRSATKVTEDLFNKMTSLKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTA 100

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           E T ++IS+L R++PQ   S+K  +W+R  Y G+ELYGKTL ++GLGRIG E+A R +AF
Sbjct: 101 EHTFAMISSLMRHIPQANISVKSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAF 160

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM V  FDP ++ E A K+ + S   E++   AD ITVHTPL  +TK L+N E + K KK
Sbjct: 161 GMTVHVFDPFLTEERAKKIGVNSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKK 220

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GVR++N ARGGI+DE ALL++L+ GH  GAALDVF  EPP   +   L+ HP VI TPHL
Sbjct: 221 GVRLINCARGGIIDEAALLEALENGHVAGAALDVFEVEPPVDNK---LVDHPLVIATPHL 277

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GASTKEAQ+ VA +++E+ +  A   P  ++I    N PA+      +   +  +A  +G
Sbjct: 278 GASTKEAQLNVAAQVSEEVLQFAKGLPVMSAI----NLPAMTKDEFAKIKPYHQIAGKIG 333

Query: 301 KISSQLLQ 308
            + SQ ++
Sbjct: 334 SLVSQCMK 341

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

>sp|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2

 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 147/306 (48%), Positives = 194/306 (63%), Gaps = 8/306 (2%)

Query: 3   DGLVVRSDTKVTAEVLQASN--LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           D L+VRS TKVT EV +A+   L+VVGRAG G+DN+DL AAT  G LV+NAP  N ++A 
Sbjct: 124 DALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEHGCLVVNAPTANTVAAA 183

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           E   +L+++++RNV Q   S+K GKW+R  Y G  L GKTLAV+G G++G EVA R +  
Sbjct: 184 EHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAVMGFGKVGTEVARRAKGL 243

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM VI  DP    + A  L +  +  +     AD++++H PL P TK + N E   K KK
Sbjct: 244 GMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLTPATKKVFNDETFSKMKK 303

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GVR++NVARGG++DE+AL+ +L  G    AALDVFCEEPP  +    LI+H  V VTPHL
Sbjct: 304 GVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKDS--RLIQHENVTVTPHL 361

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GASTKEAQ  VA+EIAE            T++    NAP +A     E T +I LA  LG
Sbjct: 362 GASTKEAQEGVAIEIAEAVAGALKGELSATAV----NAPMVAPEVLSELTPYIVLAEKLG 417

Query: 301 KISSQL 306
           +++ QL
Sbjct: 418 RLAVQL 423

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
332018401	511	D-3-phosphoglycerate dehydrogenase [Acro	0.918	0.598	0.685	1e-122
380017343	513	PREDICTED: d-3-phosphoglycerate dehydrog	0.918	0.596	0.688	1e-122
322801282	557	hypothetical protein SINV_07911 [Solenop	0.918	0.549	0.685	1e-122
328778535	513	PREDICTED: d-3-phosphoglycerate dehydrog	0.918	0.596	0.685	1e-121
307177523	511	D-3-phosphoglycerate dehydrogenase [Camp	0.918	0.598	0.678	1e-120
383851223	511	PREDICTED: d-3-phosphoglycerate dehydrog	0.918	0.598	0.678	1e-120
340727006	513	PREDICTED: d-3-phosphoglycerate dehydrog	0.918	0.596	0.675	1e-120
307196749	512	D-3-phosphoglycerate dehydrogenase [Harp	0.951	0.619	0.658	1e-120
350414282	513	PREDICTED: d-3-phosphoglycerate dehydrog	0.918	0.596	0.659	1e-118
242004086	365	D-3-phosphoglycerate dehydrogenase, puta	0.906	0.827	0.675	1e-118

>gi|332018401|gb|EGI58995.1| D-3-phosphoglycerate dehydrogenase [Acromyrmex echinatior]

 Score =  444 bits (1142), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/308 (68%), Positives = 257/308 (83%), Gaps = 2/308 (0%)

Query: 2   YDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           +D L+VRS+TKVTA++  A  NL+VVGRAGTGVDNIDL AATRKGV+VLN PGGN ISAC
Sbjct: 47  HDALIVRSETKVTADIFAACPNLRVVGRAGTGVDNIDLQAATRKGVVVLNTPGGNSISAC 106

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELTC+LISAL+RNV Q  QSLKEG+WDRKLY+G EL GKTLA+LG GRIGREVA RMQ+F
Sbjct: 107 ELTCALISALARNVAQAAQSLKEGRWDRKLYSGYELSGKTLAILGTGRIGREVAHRMQSF 166

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM ++ +DP ++ E AA+L I +L  E+IWP+ADYITVHTPL+P+TKNLINA  L KCKK
Sbjct: 167 GMNIVAYDPFLTDEIAAQLGIRNLNTEEIWPIADYITVHTPLMPETKNLINATTLAKCKK 226

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GV +VNVARGGIVDE ALL+SLK GHCGGAALDVF EEPPK+  T ELIKHPKV+ TPHL
Sbjct: 227 GVYIVNVARGGIVDEEALLNSLKSGHCGGAALDVFVEEPPKNAITLELIKHPKVVATPHL 286

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST+EAQ RVAVEIA+QF+AL+  + +YT + G++NAP L+A+   EN  WI L++ LG
Sbjct: 287 GASTEEAQQRVAVEIAQQFLALSGKSTEYT-VTGIVNAPVLSAAMTAENEPWIELSKKLG 345

Query: 301 KISSQLLQ 308
           +++ + L+
Sbjct: 346 QLAGRFLK 353

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017343|ref|XP_003692617.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Apis florea]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 212/308 (68%), Positives = 255/308 (82%), Gaps = 2/308 (0%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           ++GL+VRS+TKVTA+V     NL+VVGRAGTGVDNIDL AATRKGV+VLN PGGN ISAC
Sbjct: 47  HEGLIVRSETKVTADVFACCPNLRVVGRAGTGVDNIDLEAATRKGVIVLNTPGGNSISAC 106

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELTC+LIS L+RNV Q  QSLK+G+WDRKLY+G EL GKTLAVLG+GRIGREV  RMQA+
Sbjct: 107 ELTCALISNLARNVTQAVQSLKDGRWDRKLYSGFELSGKTLAVLGMGRIGREVTRRMQAY 166

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM+VI FDP+++ EDA  LNI    L++IWP+ADYITVHTPLIPQTKNL+NA  L KCKK
Sbjct: 167 GMRVIAFDPLLTSEDANHLNIEKFSLDEIWPIADYITVHTPLIPQTKNLVNATTLSKCKK 226

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GVR++NVARGGIVDE ALL++LK GHC GAALDVF EEPPK+  T ELI HPKVI TPHL
Sbjct: 227 GVRIINVARGGIVDEEALLNALKSGHCAGAALDVFIEEPPKNSVTLELIAHPKVISTPHL 286

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST+EAQ RVA EIA+QF+ LA  + +Y  I G++NAP L+A+ + EN SWI L++ LG
Sbjct: 287 GASTEEAQQRVAEEIAQQFLVLAGKSTEYV-ITGIVNAPMLSAAMSDENASWIELSKKLG 345

Query: 301 KISSQLLQ 308
            + S++L+
Sbjct: 346 NLISRILK 353

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801282|gb|EFZ21969.1| hypothetical protein SINV_07911 [Solenopsis invicta]

 Score =  442 bits (1138), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 211/308 (68%), Positives = 255/308 (82%), Gaps = 2/308 (0%)

Query: 2   YDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           +D L+VRS+TKVTA+V  A  NL+VVGRAGTGVDNIDL AATRKGV+VLN PGGN ISAC
Sbjct: 93  HDALIVRSETKVTADVFAACPNLRVVGRAGTGVDNIDLQAATRKGVIVLNTPGGNSISAC 152

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELTC+LIS+L+RNV Q  QSLKEG+WDRKLY+G EL GKTLA+LG+GRIGREVA RMQ+F
Sbjct: 153 ELTCALISSLARNVAQAAQSLKEGRWDRKLYSGYELSGKTLAILGMGRIGREVAHRMQSF 212

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM ++ FDP++  E AA+L I  L L +IWP+ADYITVHTPLIPQT+NLINA  L KCKK
Sbjct: 213 GMNIVAFDPILKAETAAELGIRKLNLAEIWPIADYITVHTPLIPQTRNLINATTLAKCKK 272

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GV +VNVARGGIVDE ALL+SLK GHCGGAALDVF EEPPK+  T ELIKHPKV+ TPHL
Sbjct: 273 GVYIVNVARGGIVDEEALLNSLKSGHCGGAALDVFVEEPPKNPITLELIKHPKVVPTPHL 332

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST EAQ RVAVEIA+QF+AL+  + ++  + G++NAP L+A+   EN  WI L++ LG
Sbjct: 333 GASTAEAQQRVAVEIAQQFLALSGKSTEF-DVTGIVNAPVLSAAMTSENEPWIELSKKLG 391

Query: 301 KISSQLLQ 308
           +++ + L+
Sbjct: 392 QLAGRFLK 399

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778535|ref|XP_001121753.2| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Apis mellifera]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 211/308 (68%), Positives = 254/308 (82%), Gaps = 2/308 (0%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           ++GL+VRS+TKVTA+V     NL+VVGRAGTGVDNIDL AATRKGV+VLN PGGN ISAC
Sbjct: 47  HEGLIVRSETKVTADVFACCPNLRVVGRAGTGVDNIDLEAATRKGVIVLNTPGGNSISAC 106

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELTC+LIS L+RNV Q  QSLK+G+WDRKLY+G EL GKTLAVLG+GRIGREV  RMQA+
Sbjct: 107 ELTCALISNLARNVTQAVQSLKDGRWDRKLYSGFELSGKTLAVLGMGRIGREVTRRMQAY 166

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM+VI FDP+++ EDA  LN+    L++IWP+ADYITVHTPLIPQTKNLINA  L KCKK
Sbjct: 167 GMRVIAFDPLLTSEDANYLNVEKFSLDEIWPMADYITVHTPLIPQTKNLINATTLAKCKK 226

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GVR++NVARGGIVDE ALL++LK GHC GAALDVF EEPPK+    ELI HPKVI TPHL
Sbjct: 227 GVRIINVARGGIVDEEALLNALKSGHCAGAALDVFTEEPPKNSVILELIAHPKVISTPHL 286

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST+EAQ RVA EIA+QF+ LA  + +Y  I G++NAP L+A+ + EN SWI L++ LG
Sbjct: 287 GASTEEAQQRVAEEIAQQFLVLAGRSTEYV-ITGIVNAPMLSAAISDENASWIELSKKLG 345

Query: 301 KISSQLLQ 308
            + S++L+
Sbjct: 346 NLISRILK 353

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177523|gb|EFN66634.1| D-3-phosphoglycerate dehydrogenase [Camponotus floridanus]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/308 (67%), Positives = 254/308 (82%), Gaps = 2/308 (0%)

Query: 2   YDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           +D L+VRS+TKVTA+V  A  NL+VVGRAGTGVDNIDL AATRKGV+VLN PGGN ISAC
Sbjct: 47  HDALIVRSETKVTADVFAACPNLRVVGRAGTGVDNIDLQAATRKGVIVLNTPGGNSISAC 106

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELTC+LIS+L+RNV Q  QSLKEG+WDRKLY+G EL GKTLA+LG+GRIGREVA RMQ+F
Sbjct: 107 ELTCALISSLARNVAQAAQSLKEGRWDRKLYSGYELSGKTLAILGMGRIGREVAYRMQSF 166

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM ++ FDP++  E A +L +  L LE+IWP+ADYITVHTPLIPQTKNLINA  L KCKK
Sbjct: 167 GMNIVAFDPILKPEVADELGVRLLDLENIWPVADYITVHTPLIPQTKNLINATTLAKCKK 226

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GV +VNVARGGIVDE ALL+SLK  HCGGAALDVF EEPPK+  T ELIKHPKV+ TPHL
Sbjct: 227 GVYIVNVARGGIVDEEALLNSLKLEHCGGAALDVFVEEPPKNPVTLELIKHPKVVATPHL 286

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST EAQ+RVA EIA+QF+ L+  + +Y ++ G++NAP L+A+   EN  WI L++ LG
Sbjct: 287 GASTAEAQLRVAEEIAQQFLGLSGKSAEY-AVTGIVNAPVLSAAMTNENEPWIELSKKLG 345

Query: 301 KISSQLLQ 308
           +++ + L+
Sbjct: 346 QLAGRFLK 353

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851223|ref|XP_003701138.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Megachile rotundata]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 209/308 (67%), Positives = 251/308 (81%), Gaps = 2/308 (0%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           +D L+VRS+TKV +EV      L+VVGRAGTGVDNIDL AATR GV+VLN PGGN ISAC
Sbjct: 47  HDALIVRSETKVNSEVFACCPKLRVVGRAGTGVDNIDLEAATRNGVIVLNTPGGNSISAC 106

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELTC+LISAL+RNV Q  QSLKEG+WDRKLY+G EL  KTLAVLG+GRIGREV  RMQAF
Sbjct: 107 ELTCALISALARNVAQAAQSLKEGRWDRKLYSGFELSEKTLAVLGMGRIGREVTKRMQAF 166

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM+V+ FDP+++ EDA +L +  L LE+IWPLADYITVHTPLIPQT+NLINA  L KCKK
Sbjct: 167 GMRVLAFDPLLTPEDANQLGVEKLSLEEIWPLADYITVHTPLIPQTRNLINASTLAKCKK 226

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GVRV+NVARGGIVDE ALLD+LK G C GAALDVF EEPPK+  T ELI+HP V+ TPHL
Sbjct: 227 GVRVINVARGGIVDEQALLDALKTGQCAGAALDVFIEEPPKNPVTLELIRHPNVVATPHL 286

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST EAQ RVAVEIA+QF+ALA  + +Y  + G++NAP L+ +   EN  WI L++ LG
Sbjct: 287 GASTAEAQQRVAVEIAQQFVALAGKSSEYV-VTGIVNAPILSQAMTDENAPWIELSKKLG 345

Query: 301 KISSQLLQ 308
           +++++LL+
Sbjct: 346 QLAARLLK 353

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727006|ref|XP_003401842.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Bombus terrestris]

 Score =  437 bits (1124), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/308 (67%), Positives = 254/308 (82%), Gaps = 2/308 (0%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           ++GL+VRS+TKV  +V  +   L+VVGRAGTGVDNIDL AATRKGV+VLN PGGN ISAC
Sbjct: 47  HEGLIVRSETKVVNDVFASCPKLRVVGRAGTGVDNIDLQAATRKGVIVLNTPGGNSISAC 106

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELTC+LIS+L+RNVPQ  QSLKEG+WDRKLY+G EL GKTLAVLG+GRIGREV  RMQ F
Sbjct: 107 ELTCALISSLARNVPQAVQSLKEGRWDRKLYSGFELSGKTLAVLGMGRIGREVTRRMQTF 166

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM+VI FDP+++ E A ++ +  L L++IWP+ADYITVHTPLIPQT+NLINA  L KCKK
Sbjct: 167 GMRVIAFDPLLTCEIANQIGVEKLTLDEIWPIADYITVHTPLIPQTRNLINATTLTKCKK 226

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GVR+VNVARGGIVDE ALL++LK GHC GAALDVF EEPPK+  T ELI HPKVI TPHL
Sbjct: 227 GVRIVNVARGGIVDEEALLNALKSGHCAGAALDVFIEEPPKNPVTLELIAHPKVIATPHL 286

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST+EAQ RVA EIA+QFIAL+  + +Y ++ G++NAP L A+ + EN SWI L++ LG
Sbjct: 287 GASTEEAQQRVAEEIAQQFIALSGKSTEY-AVTGIVNAPMLHAAMSDENASWIELSKKLG 345

Query: 301 KISSQLLQ 308
           ++  + L+
Sbjct: 346 QLIGRFLK 353

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307196749|gb|EFN78208.1| D-3-phosphoglycerate dehydrogenase [Harpegnathos saltator]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 210/319 (65%), Positives = 258/319 (80%), Gaps = 2/319 (0%)

Query: 1   KYDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           K+D L+VRS+TKVT +V+ A  N++V+GRAGTGVDNIDL AATRKG++V+N PGGN ISA
Sbjct: 46  KHDALIVRSETKVTEDVIAACPNVRVIGRAGTGVDNIDLQAATRKGIIVMNTPGGNSISA 105

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
           CELTC+LISAL+RNV Q  QSLKEG+WDRKLY+G EL GKTL VLG+GRIGREVA RMQA
Sbjct: 106 CELTCALISALARNVVQAAQSLKEGRWDRKLYSGHELSGKTLGVLGMGRIGREVAHRMQA 165

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FGM V+GFDP+VS E A +L I  L LE+IWP+ADYITVHTPLIPQT+ +INA  L KCK
Sbjct: 166 FGMNVVGFDPIVSDEAATELGIKKLSLEEIWPVADYITVHTPLIPQTRYMINAVSLAKCK 225

Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
           KGV ++NVARGGIVDE ALL+SL  GHCGGAALDVF +EPP +    ELI+HPKVI TPH
Sbjct: 226 KGVNIINVARGGIVDEEALLNSLNSGHCGGAALDVFTQEPPMNPFIIELIQHPKVIPTPH 285

Query: 240 LGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSL 299
           LGAST EAQ RVAVEIA+QF+AL+  + +Y +I G++NAP L A+   EN  WI L++ L
Sbjct: 286 LGASTAEAQQRVAVEIAQQFLALSGKSTEY-AITGIVNAPVLTAAMTNENRPWIELSKKL 344

Query: 300 GKISSQLLQTSTFSSTAFS 318
           G+++ + L+    ++T +S
Sbjct: 345 GQLAGRFLKGKLNTNTVYS 363

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350414282|ref|XP_003490266.1| PREDICTED: d-3-phosphoglycerate dehydrogenase-like [Bombus impatiens]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/308 (65%), Positives = 254/308 (82%), Gaps = 2/308 (0%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           ++GL+VRS+TKV  +V  +   L+VVGRAGTGVDNIDL AATRKGV+VLN PGGN ISAC
Sbjct: 47  HEGLIVRSETKVVNDVFASCPKLRVVGRAGTGVDNIDLQAATRKGVIVLNTPGGNSISAC 106

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELTC+LIS+L+RNVPQ  QSLKEG+WDRKLY+G EL GKTLAVLG+GRIGREV  RMQA+
Sbjct: 107 ELTCALISSLARNVPQAVQSLKEGRWDRKLYSGFELSGKTLAVLGMGRIGREVTRRMQAY 166

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM+VI FDP+++ E A ++ +  L L++IWP+ADYIT+HTPLIPQT+NLINA  L KCKK
Sbjct: 167 GMRVIAFDPLLTCEIANQIGVEKLTLDEIWPIADYITIHTPLIPQTRNLINATTLAKCKK 226

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           G+R++NVARGGIVDE ALL++LK  HC GAALDVF EEPPK+  T ELI HPKVI TPHL
Sbjct: 227 GIRIINVARGGIVDEEALLNALKSDHCAGAALDVFIEEPPKNPVTLELIAHPKVIATPHL 286

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST+EAQ RVA EIA+QF+AL+  + +Y ++ G++NAP L A+ + EN SWI L++ LG
Sbjct: 287 GASTEEAQQRVAEEIAQQFLALSGKSTEY-AVTGIVNAPMLHAAMSDENASWIELSKKLG 345

Query: 301 KISSQLLQ 308
           ++  + L+
Sbjct: 346 QLIGRFLK 353

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242004086|ref|XP_002422968.1| D-3-phosphoglycerate dehydrogenase, putative [Pediculus humanus corporis] gi|212505884|gb|EEB10230.1| D-3-phosphoglycerate dehydrogenase, putative [Pediculus humanus corporis]

 Score =  430 bits (1105), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 206/305 (67%), Positives = 250/305 (81%), Gaps = 3/305 (0%)

Query: 1   KYDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           ++DGL+VRSDTKVT +V+ + SNL+V+GRAGTGVDNIDL AAT+KG+ VLN PGGN ISA
Sbjct: 46  EHDGLIVRSDTKVTKDVINSVSNLKVIGRAGTGVDNIDLEAATKKGITVLNTPGGNSISA 105

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
           CE+TC+LI+ L+RNV Q CQSLKEG+WDRKLYTG ELYGKTLAVLGLGRIGREVA RM +
Sbjct: 106 CEMTCALITNLARNVVQACQSLKEGRWDRKLYTGNELYGKTLAVLGLGRIGREVARRMAS 165

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FGM+ +GFDPMVS EDA    +  + L++IWP+AD+ITVHTPLIPQT+NL+N + L KCK
Sbjct: 166 FGMRTVGFDPMVSKEDAKAFGVEKMELDEIWPVADFITVHTPLIPQTRNLVNDKTLGKCK 225

Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
           KGV ++NVARGGI+DE ALL +LK G CGGAALDVF EEPPK++ T +LIKHP V+ TPH
Sbjct: 226 KGVCIINVARGGIIDEEALLRALKDGKCGGAALDVFEEEPPKNDVTLQLIKHPLVVTTPH 285

Query: 240 LGASTKEAQIRVAVEIAEQFIALANTNP--QYTSIQGVLNAPALAASRNPENTSWISLAR 297
           LGAST EAQ RVAVEIAEQFIAL+  N   +   + G +NAP L+A+    NT WI+LA 
Sbjct: 286 LGASTYEAQQRVAVEIAEQFIALSGKNKPNENFVVNGAVNAPVLSAAMIDTNTPWINLAE 345

Query: 298 SLGKI 302
            LG++
Sbjct: 346 KLGRL 350

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	333
FB|FBgn0032350	332	CG6287 [Drosophila melanogaste	0.843	0.846	0.674	1e-98
RGD|61987	533	Phgdh "phosphoglycerate dehydr	0.879	0.549	0.598	3.5e-91
MGI|MGI:1355330	533	Phgdh "3-phosphoglycerate dehy	0.879	0.549	0.591	9.3e-91
UNIPROTKB|E1C7Y3	525	PHGDH "Uncharacterized protein	0.879	0.558	0.591	2.5e-90
UNIPROTKB|O43175	533	PHGDH "D-3-phosphoglycerate de	0.879	0.549	0.591	2.5e-90
UNIPROTKB|Q5SZU1	499	PHGDH "D-3-phosphoglycerate de	0.879	0.587	0.591	2.5e-90
UNIPROTKB|J9P120	533	LOC607890 "Uncharacterized pro	0.879	0.549	0.581	8.3e-90
UNIPROTKB|J9P9I6	520	LOC607890 "Uncharacterized pro	0.879	0.563	0.581	8.3e-90
UNIPROTKB|L7N0I9	572	LOC607890 "Uncharacterized pro	0.879	0.512	0.581	8.3e-90
UNIPROTKB|A5GFY8	533	PHGDH "D-3-phosphoglycerate de	0.879	0.549	0.581	7.5e-89

FB|FBgn0032350 CG6287 [Drosophila melanogaster (taxid:7227)]

 Score = 980 (350.0 bits), Expect = 1.0e-98, P = 1.0e-98
 Identities = 191/283 (67%), Positives = 228/283 (80%)

Query:     2 YDGLVVRSDTKVTAEVLQASN--LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
             +D  +VRSDTK+TAEVL A +  L+VVGRAG GVDNID+ AAT + V+VLN PGGN ISA
Sbjct:    47 FDAAIVRSDTKITAEVLAAGSGSLKVVGRAGAGVDNIDVPAATAQNVVVLNTPGGNSISA 106

Query:    60 CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
             CELTC LI +L+R V    QS+KEG+WDRKLY GTELYGKTLAVLGLGRIGREVA+RM+ 
Sbjct:   107 CELTCILIGSLARPVVPAGQSMKEGRWDRKLYAGTELYGKTLAVLGLGRIGREVAIRMKT 166

Query:   120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
             +GM++IG+DP+ +  +A    I  + LE+IWPLADYITVHTPLIP T+NLI+AE L KCK
Sbjct:   167 WGMRIIGYDPITTEAEAKAAGIEKMTLEEIWPLADYITVHTPLIPATRNLISAETLAKCK 226

Query:   180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
             +GV+VVNVARGGI+DE A+LD L+ G   GAA DV+ EEPPKS  T  LI HPKV+ TPH
Sbjct:   227 QGVKVVNVARGGIIDEQAVLDGLESGKVAGAAFDVYPEEPPKSAVTKALISHPKVVATPH 286

Query:   240 LGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALA 282
             LGAST EAQ+RVAVE+AEQFIAL  T+P+YTS  GV+N  ALA
Sbjct:   287 LGASTSEAQVRVAVEVAEQFIALNGTSPKYTSYAGVINKEALA 329

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISS

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

RGD|61987 Phgdh "phosphoglycerate dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 180/301 (59%), Positives = 219/301 (72%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKGVLV+N P GN +SA E
Sbjct:    49 EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAE 108

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC ++  L+R +PQ   S+K+GKWDRK + GTEL GKTL +LGLGRIGREVA RMQAFG
Sbjct:   109 LTCGMLMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFG 168

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK +G+DP++S E AA   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct:   169 MKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKG 228

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct:   229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLG 285

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct:   286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query:   302 I 302
             +
Sbjct:   342 L 342

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IDA

GO:0005575 "cellular_component" evidence=ND

GO:0006541 "glutamine metabolic process" evidence=IEA;ISO

GO:0006544 "glycine metabolic process" evidence=IEA;ISO

GO:0006563 "L-serine metabolic process" evidence=ISO

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA;ISO

GO:0009070 "serine family amino acid biosynthetic process" evidence=TAS

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA;ISO

GO:0010468 "regulation of gene expression" evidence=IEA;ISO

GO:0019530 "taurine metabolic process" evidence=IEA;ISO

GO:0021510 "spinal cord development" evidence=IEA;ISO

GO:0021782 "glial cell development" evidence=IEA;ISO

GO:0021915 "neural tube development" evidence=IEA;ISO

GO:0022008 "neurogenesis" evidence=ISO

GO:0022402 "cell cycle process" evidence=IEA;ISO

GO:0031175 "neuron projection development" evidence=IEA;ISO

GO:0051287 "NAD binding" evidence=IEA

MGI|MGI:1355330 Phgdh "3-phosphoglycerate dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 905 (323.6 bits), Expect = 9.3e-91, P = 9.3e-91
 Identities = 178/301 (59%), Positives = 219/301 (72%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct:    49 EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC +I  L+R +PQ   S+K+GKWDRK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct:   109 LTCGMIMCLARQIPQATASMKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 168

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK +G+DP++S E AA   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct:   169 MKTVGYDPIISPEVAASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKG 228

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct:   229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLG 285

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA ++G 
Sbjct:   286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEAMGT 341

Query:   302 I 302
             +
Sbjct:   342 L 342

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=ISO;TAS

GO:0006541 "glutamine metabolic process" evidence=IMP

GO:0006544 "glycine metabolic process" evidence=IMP

GO:0006563 "L-serine metabolic process" evidence=IMP

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IMP

GO:0021510 "spinal cord development" evidence=IMP

GO:0021782 "glial cell development" evidence=IMP

GO:0021915 "neural tube development" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

GO:0022402 "cell cycle process" evidence=IMP

GO:0031175 "neuron projection development" evidence=IMP

GO:0048037 "cofactor binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO;TAS

UNIPROTKB|E1C7Y3 PHGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 178/301 (59%), Positives = 220/301 (73%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             DGL+VRS TKV+A+VL+A+  LQVVGRAGTGVDN+D+ AATRKGVLV+N P GN +SA E
Sbjct:    49 DGLIVRSATKVSADVLEAAGRLQVVGRAGTGVDNVDVDAATRKGVLVMNTPTGNSLSAAE 108

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC +I  L+R +PQ   S+KEGKWDRK Y G EL GKTL VLGLGRIGREVA RMQAFG
Sbjct:   109 LTCGMILCLARQIPQAAASMKEGKWDRKKYMGMELNGKTLGVLGLGRIGREVATRMQAFG 168

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK IG+DP+++ E +A   +  L LE IWP  D+ITVHTPL+P T  L+N     KC++G
Sbjct:   169 MKTIGYDPIITPETSAAFGVEQLPLEQIWPRCDFITVHTPLLPSTTGLLNDSTFAKCRRG 228

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             V+VVN ARGGIVDE ALL +L+ G CGGAALDVF +EPPK     +L+ HP VI  PHLG
Sbjct:   229 VQVVNCARGGIVDEGALLRALRSGQCGGAALDVFTQEPPKDR---DLVDHPNVICCPHLG 285

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             AST+EAQ R   EIA Q + +A        + GV+N  AL+ +  P+   WI+LA++LG 
Sbjct:   286 ASTREAQSRCGKEIAMQIVDMATGK----GLVGVVNGQALSKAFAPQTKPWIALAKALGT 341

Query:   302 I 302
             +
Sbjct:   342 V 342

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

UNIPROTKB|O43175 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 178/301 (59%), Positives = 219/301 (72%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct:    49 EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct:   109 LTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 168

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK IG+DP++S E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct:   169 MKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKG 228

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct:   229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLG 285

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct:   286 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query:   302 I 302
             +
Sbjct:   342 L 342

GO:0051287 "NAD binding" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0031175 "neuron projection development" evidence=IEA

GO:0009055 "electron carrier activity" evidence=TAS

GO:0007420 "brain development" evidence=TAS

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006564 "L-serine biosynthetic process" evidence=TAS

GO:0008652 "cellular amino acid biosynthetic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q5SZU1 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
 Identities = 178/301 (59%), Positives = 219/301 (72%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct:    15 EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 74

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct:    75 LTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 134

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK IG+DP++S E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct:   135 MKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKG 194

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct:   195 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLG 251

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct:   252 ASTKEAQSRCGEEIAVQFVDMVKGK----SLTGVVNAQALTSAFSPHTKPWIGLAEALGT 307

Query:   302 I 302
             +
Sbjct:   308 L 308

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|J9P120 LOC607890 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 175/301 (58%), Positives = 221/301 (73%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct:    49 EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC +I  L+R++PQ   S+K+GKW+RK + GTEL GK L +LGLGRIGREVA RMQ+FG
Sbjct:   109 LTCGMIMCLARHIPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREVATRMQSFG 168

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK +G+DP+++ E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct:   169 MKTVGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKG 228

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L++H +VI  PHLG
Sbjct:   229 VRVVNCARGGIVDEGALLRALRSGQCAGAALDVFTEEPPRDRA---LVEHERVISCPHLG 285

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct:   286 ASTKEAQSRCGEEIAIQFVDMVKGK----SLAGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query:   302 I 302
             +
Sbjct:   342 L 342

GO:0051287 "NAD binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

UNIPROTKB|J9P9I6 LOC607890 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 175/301 (58%), Positives = 221/301 (73%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct:    49 EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC +I  L+R++PQ   S+K+GKW+RK + GTEL GK L +LGLGRIGREVA RMQ+FG
Sbjct:   109 LTCGMIMCLARHIPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREVATRMQSFG 168

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK +G+DP+++ E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct:   169 MKTVGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKG 228

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L++H +VI  PHLG
Sbjct:   229 VRVVNCARGGIVDEGALLRALRSGQCAGAALDVFTEEPPRDRA---LVEHERVISCPHLG 285

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct:   286 ASTKEAQSRCGEEIAIQFVDMVKGK----SLAGVVNAQALTSAFSPHTKPWIGLAEALGT 341

Query:   302 I 302
             +
Sbjct:   342 L 342

GO:0051287 "NAD binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

UNIPROTKB|L7N0I9 LOC607890 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 175/301 (58%), Positives = 221/301 (73%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct:    88 EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 147

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC +I  L+R++PQ   S+K+GKW+RK + GTEL GK L +LGLGRIGREVA RMQ+FG
Sbjct:   148 LTCGMIMCLARHIPQATASMKDGKWERKKFMGTELNGKILGILGLGRIGREVATRMQSFG 207

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK +G+DP+++ E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct:   208 MKTVGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKG 267

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L++H +VI  PHLG
Sbjct:   268 VRVVNCARGGIVDEGALLRALRSGQCAGAALDVFTEEPPRDRA---LVEHERVISCPHLG 324

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             ASTKEAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct:   325 ASTKEAQSRCGEEIAIQFVDMVKGK----SLAGVVNAQALTSAFSPHTKPWIGLAEALGT 380

Query:   302 I 302
             +
Sbjct:   381 L 381

GO:0051287 "NAD binding" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

UNIPROTKB|A5GFY8 PHGDH "D-3-phosphoglycerate dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 175/301 (58%), Positives = 218/301 (72%)

Query:     3 DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
             +GL+VRS TKVT++V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct:    49 EGLIVRSATKVTSDVINAAKKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 108

Query:    62 LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
             LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GK L +LGLGRIGREVA RMQ+FG
Sbjct:   109 LTCGMILCLARQIPQATASMKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFG 168

Query:   122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             MK IG+DP+++ E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N      CKKG
Sbjct:   169 MKTIGYDPIIAPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFALCKKG 228

Query:   182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H KVI  PHLG
Sbjct:   229 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA---LVDHEKVISCPHLG 285

Query:   242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
             AST+EAQ R   EIA QF+ +        S+ GV+NA AL ++ +P    WI LA +LG 
Sbjct:   286 ASTREAQSRCGEEIAIQFVDMVKGR----SLAGVVNAQALTSAFSPHTKPWIGLAEALGA 341

Query:   302 I 302
             +
Sbjct:   342 L 342

GO:0031175 "neuron projection development" evidence=IEA

GO:0022402 "cell cycle process" evidence=IEA

GO:0021915 "neural tube development" evidence=IEA

GO:0021782 "glial cell development" evidence=IEA

GO:0021510 "spinal cord development" evidence=IEA

GO:0019530 "taurine metabolic process" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0009448 "gamma-aminobutyric acid metabolic process" evidence=IEA

GO:0006566 "threonine metabolic process" evidence=IEA

GO:0006544 "glycine metabolic process" evidence=IEA

GO:0006541 "glutamine metabolic process" evidence=IEA

GO:0004617 "phosphoglycerate dehydrogenase activity" evidence=IEA

GO:0006564 "L-serine biosynthetic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q61753	SERA_MOUSE	1, ., 1, ., 1, ., 9, 5	0.5913	0.8798	0.5497	yes	N/A
O43175	SERA_HUMAN	1, ., 1, ., 1, ., 9, 5	0.5913	0.8798	0.5497	yes	N/A
Q54UH8	SERA_DICDI	1, ., 1, ., 1, ., 9, 5	0.3275	0.8198	0.6707	yes	N/A
Q5R7M2	SERA_PONAB	1, ., 1, ., 1, ., 9, 5	0.5880	0.8798	0.5497	yes	N/A
P43885	SERA_HAEIN	1, ., 1, ., 1, ., 9, 5	0.3579	0.7867	0.6390	yes	N/A
P0A9T1	SERA_ECOL6	1, ., 1, ., 1, ., 9, 5	0.3247	0.7867	0.6390	yes	N/A
A5GFY8	SERA_PIG	1, ., 1, ., 1, ., 9, 5	0.5813	0.8798	0.5497	yes	N/A
P0A9T3	SERA_SHIFL	1, ., 1, ., 1, ., 9, 5	0.3247	0.7867	0.6390	yes	N/A
A1RYE4	GYAR_THEPD	1, ., 1, ., 1, ., 2, 6	0.3632	0.7717	0.7581	yes	N/A
O08651	SERA_RAT	1, ., 1, ., 1, ., 9, 5	0.5980	0.8798	0.5497	yes	N/A
B1L765	GYAR_KORCO	1, ., 1, ., 1, ., 2, 6	0.3358	0.7747	0.7771	yes	N/A
A5A6P1	SERA_PANTR	1, ., 1, ., 1, ., 9, 5	0.5913	0.8798	0.5497	yes	N/A
Q1QWN6	SLCC_CHRSD	1, ., 1, ., 1, ., 3, 1, 0	0.388	0.7387	0.7961	yes	N/A
Q5EAD2	SERA_BOVIN	1, ., 1, ., 1, ., 9, 5	0.5780	0.8798	0.5497	yes	N/A
Q9YAW4	GYAR_AERPE	1, ., 1, ., 1, ., 2, 6	0.3754	0.7327	0.7283	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.766
4th Layer	1.1.1.95	0.824

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	333
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-159
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	1e-148
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	1e-129
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	1e-111
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-106
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	1e-101
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	1e-96
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	1e-92
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	2e-85
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	5e-82
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	8e-80
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	6e-79
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	2e-78
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-75
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	7e-73
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	8e-69
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	8e-67
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	2e-66
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	2e-65
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	1e-63
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	2e-63
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	2e-63
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-60
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	5e-60
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	7e-60
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	1e-59
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	6e-59
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	9e-58
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	3e-55
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	4e-53
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	9e-53
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	2e-51
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	3e-51
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	8e-51
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	2e-50
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	1e-49
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	2e-46
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	1e-45
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	5e-44
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	6e-42
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	2e-41
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	2e-40
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	2e-40
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	6e-40
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	2e-39
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	3e-34
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	1e-33
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	8e-33
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	4e-32
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	2e-31
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	2e-31
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	2e-31
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	5e-28
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	5e-27
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	3e-25
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	2e-24
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	1e-23
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	2e-21
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	2e-18
PRK15469	312	PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr	4e-15
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	6e-07
TIGR00452	314	TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransfer	0.002
smart00997	162	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei	0.004

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  454 bits (1172), Expect = e-159
 Identities = 165/307 (53%), Positives = 217/307 (70%), Gaps = 8/307 (2%)

Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           YD L+VRS TKVTAEVL+ A NL+V+GRAG GVDN+D+ AATR+G++V+NAP GN ISA 
Sbjct: 43  YDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAA 102

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           E T +L+ AL+RN+PQ   SLK GKW+RK + G ELYGKTL ++GLGRIG EVA R +AF
Sbjct: 103 EHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAF 162

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GMKVI +DP +S E AA+L +  + L+++   AD+IT+HTPL P+T+ LI AE L K K 
Sbjct: 163 GMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKP 222

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GVR++N ARGGI+DE AL ++LK G   GAALDVF +EPP       L + P V+VTPHL
Sbjct: 223 GVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDS---PLFELPNVVVTPHL 279

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST EAQ  VA+++AEQ I      P    +   +N P++ A    +   ++ LA  LG
Sbjct: 280 GASTAEAQENVAIQVAEQVIDALRGGP----VPNAVNLPSITAEEAEKLKPYLDLAEKLG 335

Query: 301 KISSQLL 307
            +++QL 
Sbjct: 336 SLAAQLA 342

Length = 526

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  418 bits (1078), Expect = e-148
 Identities = 152/262 (58%), Positives = 196/262 (74%), Gaps = 3/262 (1%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            D L+VRS TKVTAEV++A+  L+V+GRAG GVDNID+ AAT +G+LV+NAPG N IS  
Sbjct: 41  ADALIVRSATKVTAEVIEAAPRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVA 100

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           E T +L+ AL+RN+PQ   SL+ GKWDRK + G EL GKTL ++GLGRIGREVA R +AF
Sbjct: 101 EHTIALMLALARNIPQADASLRAGKWDRKKFMGVELRGKTLGIVGLGRIGREVARRARAF 160

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GMKV+ +DP +S E AA   +  + L+++   AD+I++HTPL P+T+ LINAE L K K 
Sbjct: 161 GMKVLAYDPYISAERAAAGGVELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKP 220

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           G  ++N ARGGIVDE AL D+LK G   GAALDVF +EPP ++    L+  P VI+TPHL
Sbjct: 221 GAILINTARGGIVDEAALADALKSGKIAGAALDVFEQEPPPAD--SPLLGLPNVILTPHL 278

Query: 241 GASTKEAQIRVAVEIAEQFIAL 262
           GAST+EAQ RVAV+ AEQ +A+
Sbjct: 279 GASTEEAQERVAVDAAEQVLAV 300

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  379 bits (975), Expect = e-129
 Identities = 162/309 (52%), Positives = 209/309 (67%), Gaps = 9/309 (2%)

Query: 1   KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
            YD L+VRS TKVT EV+  A  L+V+GRAG GVDNID+ AAT +G+LV+NAP GN ISA
Sbjct: 40  DYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISA 99

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
            E   +++ A +RN+PQ   SLKEG+WDRK + GTELYGKTL V+GLGRIG  VA R +A
Sbjct: 100 AEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
           FGMKV+ +DP +S E A +L +  +  L+++   AD+ITVHTPL P+T+ LI AE L K 
Sbjct: 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKM 219

Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238
           KKGV +VN ARGGI+DE AL ++L+ GH   AALDVF +EPP       L     VI TP
Sbjct: 220 KKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNP---LFDLDNVIATP 276

Query: 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARS 298
           HLGAST+EAQ  VA ++AEQ +      P    +   +NAP + A    +   ++ LA  
Sbjct: 277 HLGASTREAQENVATQVAEQVLDALKGLP----VPNAVNAPGIDADVMEKLKPYLDLAEK 332

Query: 299 LGKISSQLL 307
           LGK++ QLL
Sbjct: 333 LGKLAGQLL 341

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  324 bits (832), Expect = e-111
 Identities = 123/262 (46%), Positives = 178/262 (67%), Gaps = 4/262 (1%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           YD L+VRS TKVT EV+ A+ NL+++ RAG G+DNID+  A +KG+ V+N PG +  S  
Sbjct: 42  YDVLIVRSRTKVTKEVIDAAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVA 101

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           EL   L+ +L+R + +  + +K GKW++K Y G EL GKTL ++G GRIGREVA   +A 
Sbjct: 102 ELVIGLMLSLARFIHRANREMKLGKWNKKKYKGIELRGKTLGIIGFGRIGREVAKIARAL 161

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM VI +DP    E A +L + ++ LE++   +D+I++H PL P+TK++IN + L+  K 
Sbjct: 162 GMNVIAYDPYPKDEQAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKD 221

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           G  ++N +RGG++DE ALL++LK G   GAALDVF  EPP      +L++ P V +TPH+
Sbjct: 222 GAIIINTSRGGVIDEEALLEALKSGKLAGAALDVFENEPPPGS---KLLELPNVSLTPHI 278

Query: 241 GASTKEAQIRVAVEIAEQFIAL 262
           GASTKEAQ R+  E+A + I  
Sbjct: 279 GASTKEAQERIGEELANKIIEF 300

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  313 bits (803), Expect = e-106
 Identities = 145/289 (50%), Positives = 186/289 (64%), Gaps = 11/289 (3%)

Query: 1   KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
             D L+V S T VT EVL  A NL+ +GRAG GVDNIDL AAT++G+LV+NAPGGN IS 
Sbjct: 45  DADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISV 103

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
            EL  +L+ AL+R +P    S + G+WDRK + GTEL GKT+ ++GLGRIGR VA R++A
Sbjct: 104 AELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKA 163

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
           FGMKVIG+DP    E A    +  +  L+++   AD +T+H PL P+T+ LINAE L K 
Sbjct: 164 FGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKM 223

Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238
           K G  ++N ARGG+VDE+ALL +L  G   GAALDVF EEP  ++    L   P VI+TP
Sbjct: 224 KPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADS--PLWDLPNVILTP 281

Query: 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNP 287
           H+G ST EAQ RVA  +AE  +      P       V NAP +   R  
Sbjct: 282 HIGGSTDEAQERVAEIVAENIVRYLAGGPV------VNNAPEVDLERGY 324

Length = 324

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  300 bits (771), Expect = e-101
 Identities = 123/256 (48%), Positives = 170/256 (66%), Gaps = 6/256 (2%)

Query: 3   DGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           DG++   D  +T EVL  A  L+V+ R G G DNIDL AA ++G++V N PG N  S  E
Sbjct: 49  DGVIAGLD-PITEEVLAAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAE 107

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LT  L+ AL+R +PQ  + ++ G WDR    GTELYGKTL ++GLGRIG+ VA R+  FG
Sbjct: 108 LTIGLMLALARQIPQADREVRAGGWDR--PVGTELYGKTLGIIGLGRIGKAVARRLSGFG 165

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MKV+ +DP    E A +  +  + LE++   +D+I++H PL P+T++LINA  L   K G
Sbjct: 166 MKVLAYDPYPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPG 225

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             ++N ARGG+VDE AL ++LK G   GAALDVF EEPP ++    L++ P VI+TPH+G
Sbjct: 226 AILINTARGGLVDEEALYEALKSGRIAGAALDVFEEEPPPADS--PLLELPNVILTPHIG 283

Query: 242 ASTKEAQIRVAVEIAE 257
           ASTKEA +R+    A+
Sbjct: 284 ASTKEAVLRMGTMAAQ 299

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  287 bits (738), Expect = 1e-96
 Identities = 112/263 (42%), Positives = 157/263 (59%), Gaps = 4/263 (1%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            D L+V S T VTAEVL  +  L+ +  AG GVDNIDL AA ++G+ V N PG N  +  
Sbjct: 42  ADALIVSSTTPVTAEVLAKAPKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVA 101

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKL-YTGTELYGKTLAVLGLGRIGREVALRMQA 119
           E    L+ AL R +P+   +++ G       + G EL GKT+ ++GLGRIG+ VA R+QA
Sbjct: 102 EHALGLLLALLRRLPRADAAVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQA 161

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FGMKV+ +D     E    L    + L+++   +D + +H PL P+T++LIN E L   K
Sbjct: 162 FGMKVLYYDRTRKPEPEEDLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMK 221

Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
            G  +VN ARGG+VDE+ALL +LK G   GAALDVF  EP  ++    L++ P VI+TPH
Sbjct: 222 PGAVLVNTARGGLVDEDALLRALKSGKIAGAALDVFEPEPLPADHP--LLELPNVILTPH 279

Query: 240 LGASTKEAQIRVAVEIAEQFIAL 262
           +   T+EA+ R+A    E     
Sbjct: 280 IAGYTEEARERMAEIAVENLERF 302

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  277 bits (712), Expect = 1e-92
 Identities = 122/272 (44%), Positives = 160/272 (58%), Gaps = 22/272 (8%)

Query: 2   YDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
            D L+VRSD K+      A +L+ + RAG GV+NID+ AA+++G++V N PG N  +  E
Sbjct: 32  PDALIVRSD-KLHDMDF-APSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAE 89

Query: 62  LTCSLISALSRNVPQGCQ---------SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGRE 112
           L  +++ ALSRN+ Q  +           K  +  +K + GTEL GKTL V+GLG IGR 
Sbjct: 90  LVIAMMLALSRNIIQAIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRL 149

Query: 113 VALRMQAFGMKVIGFDPMVSVEDAAKLN---IASLGLEDIWPLADYITVHTPLIPQTKNL 169
           VA    A GMKVIG+DP +SVE A KL+        LE++   ADYIT+H PL  +T+ L
Sbjct: 150 VANAALALGMKVIGYDPYLSVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGL 209

Query: 170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELI 229
           INAE+L K K G  ++N ARG IVDE ALL++L  G  GG   D    EP          
Sbjct: 210 INAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKLGGYVTDF--PEPALLG------ 261

Query: 230 KHPKVIVTPHLGASTKEAQIRVAVEIAEQFIA 261
             P VI TPHLGAST+EA+   AV  A Q + 
Sbjct: 262 HLPNVIATPHLGASTEEAEENCAVMAARQIMD 293

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  260 bits (666), Expect = 2e-85
 Identities = 103/278 (37%), Positives = 159/278 (57%), Gaps = 6/278 (2%)

Query: 2   YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            D ++   + ++ AEVL +   L+++     G DN+DL AA  +G+ V N PG +  +  
Sbjct: 45  ADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVA 104

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLY----TGTELYGKTLAVLGLGRIGREVALR 116
           E   +LI AL+R + +G + ++EG W          G +L GKTL ++GLGRIG+ VA R
Sbjct: 105 EHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARR 164

Query: 117 MQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176
           ++ FGMKV+ +D   + E   +L    + L+++   +D I++H PL P+T++LINAE L 
Sbjct: 165 LKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELA 224

Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTF-ELIKHPKVI 235
           K K G  +VN ARGG+VDE AL+D+LK G   GA LDVF  EP   +     L   P V+
Sbjct: 225 KMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVV 284

Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQ 273
           +TPH+ ++T+EA+  +A    E   A  +       + 
Sbjct: 285 LTPHIASATEEARKAMAELALENLEAFFDGGVPPNEVN 322

Length = 324

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  251 bits (642), Expect = 5e-82
 Identities = 107/271 (39%), Positives = 146/271 (53%), Gaps = 8/271 (2%)

Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            D L+VRS T VTAEVL+ A  L+V+ R G GVDNIDL AAT +G+LV N PG +  S  
Sbjct: 39  ADALIVRSTTPVTAEVLEAAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVA 98

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELT  LI AL+R +P+   S++ G W +    G ELYGKTL V+G G IG   A   +A 
Sbjct: 99  ELTVGLILALARRIPEADASVRAGDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKAL 158

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA----DYITVHTPLIPQTKNLINAEVLK 176
           GM V+ +DP  + E A +  +  L L+ +        D I +  P   +T ++I  E   
Sbjct: 159 GMGVVAYDPYPNPERAEEGGVEVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARG 218

Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV 236
             K  V + N   GG+++E AL   L+ G    A   V  E PP +     L+  P VI+
Sbjct: 219 MLKDAVAINNARGGGVIEEAALDALLEEGIAAAALDVVEEEPPPVNS---PLLDLPNVIL 275

Query: 237 TPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
           TPH+  +T+EAQ  +A E AE  +A      
Sbjct: 276 TPHIAGATEEAQENMAEEAAENLLAFLKGGT 306

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  245 bits (628), Expect = 8e-80
 Identities = 107/265 (40%), Positives = 154/265 (58%), Gaps = 19/265 (7%)

Query: 3   DGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC- 60
           D L+V+    VTAEV++A   L+V+ R G GVDN+D+ AAT +G+ V N P       C 
Sbjct: 46  DALLVQY-APVTAEVIEALPRLKVIVRYGVGVDNVDVAAATERGIPVCNVPD-----YCT 99

Query: 61  ----ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGT-ELYGKTLAVLGLGRIGREVAL 115
               +   +LI AL+R +P   ++++ G WD  +      L G TL ++G GRIGR VA 
Sbjct: 100 EEVADHALALILALARKLPFLDRAVRAGGWDWTVGGPIRRLRGLTLGLVGFGRIGRAVAK 159

Query: 116 RMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
           R +AFG +VI +DP V    AA   +  + L+++   +D +++H PL P+T++LI+AE L
Sbjct: 160 RAKAFGFRVIAYDPYVPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAEAL 219

Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
              K G  +VN ARGG+VDE AL  +LK G   GAALDV  EEPP ++    L+  P VI
Sbjct: 220 ALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEEEPPPADS--PLLSAPNVI 277

Query: 236 VTPHLG----ASTKEAQIRVAVEIA 256
           +TPH       S  E + + A E+ 
Sbjct: 278 LTPHAAWYSEESLAELRRKAAEEVV 302

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  243 bits (622), Expect = 6e-79
 Identities = 103/259 (39%), Positives = 151/259 (58%), Gaps = 5/259 (1%)

Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            D LV      + AE+L  A  L+++ + G G+D +DL AAT +G+ V N PGGN  S  
Sbjct: 44  ADVLVPGMRKVIDAELLAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVA 103

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLY-TGTELYGKTLAVLGLGRIGREVALRMQA 119
           E    L+ AL R +P+  + L+ G+W R       EL GKT+ ++GLG IGR VA R++ 
Sbjct: 104 EHAVMLMLALLRRLPEADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRG 163

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
           FG++VI +D     E   K        L+++   +D +++H PL P+T++LI AE L   
Sbjct: 164 FGVEVIYYDRFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAM 223

Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238
           K G  ++N ARGG+VDE ALL +L+ GH  GA LDVF +EP   +    L++   VI+TP
Sbjct: 224 KPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQEPLPPDD--PLLRLDNVILTP 281

Query: 239 HLGASTKEAQIRVAVEIAE 257
           H+   T E+  R+A  +AE
Sbjct: 282 HIAGVTDESYQRMAAIVAE 300

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  241 bits (618), Expect = 2e-78
 Identities = 98/266 (36%), Positives = 153/266 (57%), Gaps = 8/266 (3%)

Query: 2   YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            D L+      VT +V+  A  L+++G    G +N+D+ AAT +G+ VLN PG N  +  
Sbjct: 47  ADILITHFAP-VTKKVIEAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVA 105

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLY----TGTELYGKTLAVLGLGRIGREVALR 116
           E T  L+ A +RN+ +   +LK+G+W +  Y     G EL GKT+ ++G G IGR VA R
Sbjct: 106 EFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGIVGFGAIGRRVAKR 165

Query: 117 MQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176
           ++AFG +V+ +DP V  E      +  + LE++   +D +++H  L P+T+ +I AE   
Sbjct: 166 LKAFGAEVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLTPETRGMIGAEEFA 225

Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV 236
             K     +N AR G+VDE+AL+++L+ G  GGAALDVF EEP  ++    L+K   V +
Sbjct: 226 LMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLPADH--PLLKLDNVTL 283

Query: 237 TPHLGASTKEAQIRVAVEIAEQFIAL 262
           TPH+  +T++   R    IAE+    
Sbjct: 284 TPHIAGATRDVAERSPEIIAEELKRY 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  228 bits (585), Expect = 2e-75
 Identities = 77/177 (43%), Positives = 115/177 (64%), Gaps = 3/177 (1%)

Query: 65  SLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
           +L+ AL+R +P+  + ++ G+W      G EL GKT+ ++GLGRIGR VA R++AFGMKV
Sbjct: 2   ALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMKV 61

Query: 125 IGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRV 184
           I +D      +A  L    + L+++   +D +++H PL P+T++LINAE L   K G  +
Sbjct: 62  IAYDRYPK-AEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAIL 120

Query: 185 VNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           +N ARGG+VDE+AL+ +LK G   GAALDVF  EP   +    L++ P VI+TPH+ 
Sbjct: 121 INTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDH--PLLELPNVILTPHIA 175

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  227 bits (582), Expect = 7e-73
 Identities = 95/256 (37%), Positives = 152/256 (59%), Gaps = 8/256 (3%)

Query: 2   YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            DGL+     K+ AE+L  A  L+V+     G D+ID+ AA  +G+ V N P     +  
Sbjct: 44  ADGLLCTLTDKIDAELLDAAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATA 103

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALRM 117
           +L  +L+ A +R V +G + ++ G+W      L  GT+L+GKTL ++G+GRIG+ VA R 
Sbjct: 104 DLAFALLLAAARRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRA 163

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           + FGMK++  +     E   +L    + L+++   +D++++H PL P+T++LINAE L  
Sbjct: 164 KGFGMKILYHNRSRKPEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLAL 223

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIV 236
            K    ++N ARGG+VDE+AL+++LK G   GA LDVF  EP P       L+  P V++
Sbjct: 224 MKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFEPEPLPADH---PLLTLPNVVL 280

Query: 237 TPHLGASTKEAQIRVA 252
            PH+G++T E +  +A
Sbjct: 281 LPHIGSATVETRTAMA 296

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  217 bits (555), Expect = 8e-69
 Identities = 105/269 (39%), Positives = 157/269 (58%), Gaps = 8/269 (2%)

Query: 1   KYDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
            YD L+    T V  E++ A+ NL+++   G G DNID+  A  KG+ V N P  +    
Sbjct: 43  DYDALITPLSTPVDKEIIDAAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPT 102

Query: 60  CELTCSLISALSRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALR 116
            ELT  LI AL+R + +G + ++ G    W    + G EL GKTL ++G+GRIG+ VA R
Sbjct: 103 AELTFGLILALARRIAEGDRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARR 162

Query: 117 MQAFGMKVIGFDPM-VSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
            +AFGMK++ ++   +S E   +L    + L+++   +D++++H P  P+T +LI+A   
Sbjct: 163 AKAFGMKILYYNRHRLSEETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAF 222

Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
           K  K    ++N ARG +VDE AL+D+LK G   GAALDVF  EP  S    EL K   VI
Sbjct: 223 KLMKPTAYLINAARGPLVDEKALVDALKTGEIAGAALDVFEFEPEVSP---ELKKLDNVI 279

Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALAN 264
           +TPH+G +T EA+  +A E A+  I+   
Sbjct: 280 LTPHIGNATVEARDAMAKEAADNIISFLE 308

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  211 bits (541), Expect = 8e-67
 Identities = 102/263 (38%), Positives = 151/263 (57%), Gaps = 12/263 (4%)

Query: 5   LVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELT 63
           +++R  T   A +L+   NL+++   G    +IDL AA  +G++V    GG   +  ELT
Sbjct: 51  VLMRERTPFPAALLERLPNLKLLVTTGMRNASIDLAAAKERGIVVCGTGGGP-TATAELT 109

Query: 64  CSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMK 123
            +LI AL+RN+P+   +L+ G W   L  GT L GKTL ++GLGRIG  VA   QAFGM+
Sbjct: 110 WALILALARNLPEEDAALRAGGWQTTL--GTGLAGKTLGIVGLGRIGARVARIGQAFGMR 167

Query: 124 VIGFDPMVSVEDAAKLNI-ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGV 182
           VI +   ++ E AA   + A++  E+++  +D +++H  L  +T+ L+ AE L   K   
Sbjct: 168 VIAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTA 227

Query: 183 RVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHLG 241
            +VN +RG +VDE ALL +L+ G   GAALDVF  EP P       L   P V++TPH+G
Sbjct: 228 LLVNTSRGPLVDEGALLAALRAGRIAGAALDVFDVEPLPADH---PLRGLPNVLLTPHIG 284

Query: 242 ASTKEA---QIRVAVEIAEQFIA 261
             T+EA       AVE    ++A
Sbjct: 285 YVTEEAYEGFYGQAVENIAAWLA 307

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  210 bits (538), Expect = 2e-66
 Identities = 105/265 (39%), Positives = 158/265 (59%), Gaps = 21/265 (7%)

Query: 7   VRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
           +RS T++T EVL+A+  L  +G    G + +DL AA ++G+ V NAP  N  S  EL   
Sbjct: 48  IRSKTQLTEEVLEAAPKLLAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 107

Query: 66  LISALSRNVPQGCQSLKEGKWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
            I  L+R +P    +   G W+ K  TG+ E+ GKTL ++G G IG ++++  +A GM+V
Sbjct: 108 EIIMLARRLPDRNAAAHRGIWN-KSATGSHEVRGKTLGIIGYGHIGSQLSVLAEALGMRV 166

Query: 125 IGFDPMVSVEDAAKLNIASLG-------LEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           I +D       A KL    LG       LE++   AD++T+H P  P TKN+I AE + +
Sbjct: 167 IFYDI------AEKL---PLGNARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQ 217

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTF--ELIKHPKVI 235
            KKG  ++N +RG +VD +AL ++L+ GH  GAA+DVF EEP  + + F   L   P VI
Sbjct: 218 MKKGAILINASRGTVVDIDALAEALRSGHLAGAAVDVFPEEPASNGEPFSSPLQGLPNVI 277

Query: 236 VTPHLGASTKEAQIRVAVEIAEQFI 260
           +TPH+G ST+EAQ  + +E+A + +
Sbjct: 278 LTPHIGGSTEEAQENIGLEVAGKLV 302

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  208 bits (531), Expect = 2e-65
 Identities = 102/259 (39%), Positives = 155/259 (59%), Gaps = 15/259 (5%)

Query: 6   VVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTC 64
           V+ +   + AEVL Q  NL+++G   TG +N+DL AA  +G+ V N PG +  S  + T 
Sbjct: 48  VITNKVVLDAEVLAQLPNLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTF 107

Query: 65  SLISALSRNVPQGCQSLKEGKWDRK------LYTGTELYGKTLAVLGLGRIGREVALRMQ 118
           +L+ AL+R V      +K G+W +        Y   EL GKTL ++G G IG+ VA   +
Sbjct: 108 ALLLALARLVAYHNDVVKAGEWQKSPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARIAR 167

Query: 119 AFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
           AFGMKV+  +     + A  L    + L+++   +D I++H PL P+T+NLINAE L K 
Sbjct: 168 AFGMKVLFAER----KGAPPLREGYVSLDELLAQSDVISLHCPLTPETRNLINAEELAKM 223

Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIK-HPKVIVT 237
           K G  ++N ARGG+VDE AL D+L  G   GA LDV  +EPP+++    L+K  P +I+T
Sbjct: 224 KPGAILINTARGGLVDEQALADALNSGKIAGAGLDVLSQEPPRADN--PLLKAAPNLIIT 281

Query: 238 PHLGASTKEAQIRVAVEIA 256
           PH+  +++EA+ R+ ++I 
Sbjct: 282 PHIAWASREARQRL-MDIL 299

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  204 bits (520), Expect = 1e-63
 Identities = 97/248 (39%), Positives = 145/248 (58%), Gaps = 8/248 (3%)

Query: 20  ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPG-GNFISACELTCSLISALSRNVPQGC 78
              L+++ R G G DN+DL AAT  GV+V   PG     +  E   +LI  + R + Q  
Sbjct: 67  NDGLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQAS 126

Query: 79  QSLKEGKW-DRKLYTGTELYGKTLAVLGLGRIGREVA-LRMQAFGMKVIGFDPMVSVEDA 136
           +++KEGKW +R  + G EL GKT+ ++G G IG  VA +  + F  KV+ +DP VS E  
Sbjct: 127 EAVKEGKWTERANFVGHELSGKTVGIIGYGNIGSRVAEILKEGFNAKVLAYDPYVSEEVI 186

Query: 137 AKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDEN 196
            K     + LE++   +D I++H PL  +T ++IN +   K KKGV +VN ARG ++DE 
Sbjct: 187 KKKGAKPVSLEELLAESDIISLHAPLTEETYHMINEKAFSKMKKGVILVNTARGELIDEE 246

Query: 197 ALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRV---AV 253
           AL+++LK G   GA LDV  EEP K++    L+ +  V++TPH+GA T E+   +    V
Sbjct: 247 ALIEALKSGKIAGAGLDVLEEEPIKADHP--LLHYENVVITPHIGAYTYESLYGMGEKVV 304

Query: 254 EIAEQFIA 261
           +  E F+A
Sbjct: 305 DDIEDFLA 312

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  204 bits (520), Expect = 2e-63
 Identities = 97/273 (35%), Positives = 143/273 (52%), Gaps = 22/273 (8%)

Query: 11  TKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISA 69
           +++ AEVL +   L+++    TG D+IDL A   +G+ V N P     +  E   +L+ A
Sbjct: 51  SRLDAEVLEKLPRLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLA 110

Query: 70  LSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
           LSR + +  +  + G + +    G EL GKTL V+G GRIGR VA   + FGMKV+ +D 
Sbjct: 111 LSRKLREAIERTRRGDFSQAGLRGFELAGKTLGVVGTGRIGRRVARIARGFGMKVLAYDV 170

Query: 130 MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR 189
           +   E A +L    + LE++   +D I++H P  PQT +LIN E     K G  ++N AR
Sbjct: 171 VPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLINTAR 230

Query: 190 GGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQ------------------TFELIKH 231
           G +VD  AL+ +LK G   GA LDV  +E    E+                     L++ 
Sbjct: 231 GAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHALLRK 290

Query: 232 PKVIVTPHLGASTKEAQIRV---AVEIAEQFIA 261
           P VI+TPH+  +TKEA  R+    VE  + F A
Sbjct: 291 PNVIITPHVAYNTKEALERILDTTVENIKAFAA 323

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  203 bits (518), Expect = 2e-63
 Identities = 98/270 (36%), Positives = 150/270 (55%), Gaps = 11/270 (4%)

Query: 1   KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           +YDGL++RS   +  E ++ A+NL+ + RAG G++NIDL  A  KG+ + NAP GN  + 
Sbjct: 40  QYDGLIIRSRFPIDKEFIEKATNLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAV 99

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
            E    ++ AL   + +  Q ++ G WDR+   G EL GKT+ ++G G +G+  A R+  
Sbjct: 100 GEHALGMLLALFNKLNRADQEVRNGIWDREGNRGVELMGKTVGIIGYGNMGKAFAKRLSG 159

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FG KVI +D   +  DA       + LE ++  AD +++H PL P+T+ ++N E +   K
Sbjct: 160 FGCKVIAYDKYKNFGDA---YAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFK 216

Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTF-------ELIKHP 232
           K    +N ARG +V    L+ +LK G   GA LDV   E    E  F        LIK P
Sbjct: 217 KPFYFINTARGKVVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSP 276

Query: 233 KVIVTPHLGASTKEAQIRVAVEIAEQFIAL 262
           KVI+TPH+   T E+  ++A  + ++  AL
Sbjct: 277 KVILTPHIAGWTFESYEKIAEVLVDKIKAL 306

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  195 bits (498), Expect = 2e-60
 Identities = 93/270 (34%), Positives = 147/270 (54%), Gaps = 12/270 (4%)

Query: 3   DGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           DGL+     ++ A+ L A   L+++  A  G DN D+ A T +G+ V   P        E
Sbjct: 46  DGLMAFMPDRIDADFLDACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAE 105

Query: 62  LTCSLISALSRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQ 118
           LT  L+  L R++  G + ++ GK   W  K Y GT L GKT+ +LG+G +GR +A R+ 
Sbjct: 106 LTIGLLIGLGRHILAGDRFVRSGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLS 164

Query: 119 AFGMKVIGFDPM-VSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
            FG  ++ +DP  +   +   LN+  + L+++   +D++ +  PL P T +LINAE L K
Sbjct: 165 GFGATLLYYDPHPLDQAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAK 224

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP------PKSEQTFELIKH 231
            K G  +VN  RG +VDE A+ ++LK GH GG A DVF  E       P+S     L +H
Sbjct: 225 MKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQH 284

Query: 232 PKVIVTPHLGASTKEAQIRVAVEIAEQFIA 261
            + + TPH+G++  E ++ + +E A   + 
Sbjct: 285 DRTVFTPHIGSAVDEVRLEIELEAALNILQ 314

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  194 bits (496), Expect = 5e-60
 Identities = 88/260 (33%), Positives = 135/260 (51%), Gaps = 21/260 (8%)

Query: 14  TAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC-----ELTCSL 66
             E++     +L+++  AG G D ID+ A T++G+ V N PG     A      +    L
Sbjct: 66  DEELISPLPPSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPG-----AVDEATADTALFL 120

Query: 67  ISALSRNVPQGCQSLKEGKW-DRKLYTGTE-LYGKTLAVLGLGRIGREVALRMQAFGMKV 124
           I    RN  +  +S + GKW      T      GKTL +LGLG IG+ +A +  AFGMK+
Sbjct: 121 ILGALRNFSRAERSARAGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKI 180

Query: 125 IGFDPM-VSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
           I  +   +  E    L    + L+++   +D ++++ PL   T++LIN +   K K GV 
Sbjct: 181 IYHNRSRLPEELEKALATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVI 240

Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAS 243
           +VN ARG ++DE+AL+D+L+ G    A LDVF  EP  +     L+K P V + PH+G  
Sbjct: 241 IVNTARGAVIDEDALVDALESGKVASAGLDVFENEPEVNP---GLLKMPNVTLLPHMGTL 297

Query: 244 TKEAQI---RVAVEIAEQFI 260
           T E Q     + +E  E F+
Sbjct: 298 TVETQEKMEELVLENIEAFL 317

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  194 bits (495), Expect = 7e-60
 Identities = 91/255 (35%), Positives = 138/255 (54%), Gaps = 4/255 (1%)

Query: 15  AEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRN 73
            EV++A  NL+++  A TGVD++DL A   +G+ V NA G +  +  ELT  L   L RN
Sbjct: 61  GEVIEACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRN 120

Query: 74  VPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV 133
           +     +++ G   +    G EL GKT+ ++G G IG  VA   +AFG KV+ +      
Sbjct: 121 IVPCDAAVRAGG-TKAGLIGRELAGKTVGIVGTGAIGLRVARLFKAFGCKVLAYSRSEK- 178

Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
           E+A  L I  + L+++   +D +++H PL  +TK LI  E L   K+   ++N ARG +V
Sbjct: 179 EEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARGPVV 238

Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
           D  AL D+L  G   GA +DVF  EPP     + L+  P  I+TPH+  +T+EA  + A 
Sbjct: 239 DNEALADALNEGKIAGAGIDVFDMEPPLPAD-YPLLHAPNTILTPHVAFATEEAMEKRAE 297

Query: 254 EIAEQFIALANTNPQ 268
            + +   A     PQ
Sbjct: 298 IVFDNIEAWLAGKPQ 312

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  196 bits (501), Expect = 1e-59
 Identities = 102/265 (38%), Positives = 151/265 (56%), Gaps = 21/265 (7%)

Query: 7   VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
           +RS T++T EVL A+  L  +G    G + +DL AA ++G+ V NAP  N  S  EL   
Sbjct: 59  IRSRTQLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 118

Query: 66  LISALSRNVPQGCQSLKEGKWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
            I  L R +P+       G W+ K   G+ E+ GKTL ++G G IG ++++  ++ GM+V
Sbjct: 119 EIILLLRGIPEKNAKAHRGGWN-KSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRV 177

Query: 125 IGFDPMVSVEDAAKLNIASLG-------LEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
             +D    +ED  KL    LG       LE++   +D +++H P  P TKN+I AE L  
Sbjct: 178 YFYD----IED--KL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELAL 228

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVI 235
            K G  ++N +RG +VD +AL D+LK GH  GAA+DVF  EP  +   FE  L     VI
Sbjct: 229 MKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVI 288

Query: 236 VTPHLGASTKEAQIRVAVEIAEQFI 260
           +TPH+G ST+EAQ  + +E+A + +
Sbjct: 289 LTPHIGGSTQEAQENIGLEVAGKLV 313

Length = 409

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  192 bits (489), Expect = 6e-59
 Identities = 94/270 (34%), Positives = 148/270 (54%), Gaps = 11/270 (4%)

Query: 3   DGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           D LV     ++  EV   A  L++V     G DNID+  ATR+G+ V N PG    +  +
Sbjct: 47  DALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATAD 106

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDR-------KLYTGTELYGKTLAVLGLGRIGREVA 114
              +L+ A +R + +    ++ G+W R        ++ G ++YGKT+ ++G GRIG+ VA
Sbjct: 107 FAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVA 166

Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
            R + FGM+++ +      E   +L      LE++   +D++++H PL  +T ++IN E 
Sbjct: 167 RRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEER 226

Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           LK  K    +VN ARG +VD  AL+ +LK G   GA LDVF EEP  +E   EL     V
Sbjct: 227 LKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNE---ELFSLKNV 283

Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALAN 264
           ++ PH+G++T EA+  +A  +AE  IA   
Sbjct: 284 VLAPHIGSATFEAREGMAELVAENLIAFKR 313

Length = 333

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  189 bits (481), Expect = 9e-58
 Identities = 94/259 (36%), Positives = 137/259 (52%), Gaps = 17/259 (6%)

Query: 3   DGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           D ++     K+ AE+L  A  L+ +    TG DNIDL  A   G+ V N P  +  +  E
Sbjct: 47  DAILTAFTDKIDAELLDKAPGLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAE 106

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYT--GTELYGKTLAVLGLGRIGREVALRMQA 119
            T +LI AL RN  +     ++   D +     G EL  +T+ V+G G+IGR VA R + 
Sbjct: 107 HTIALILALLRN--RKYIDERDKNQDLQDAGVIGRELEDQTVGVVGTGKIGRAVAQRAKG 164

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FGMKVI +DP  + E   K  +  + LE+++  +D I++H PL P+  ++IN E  K  K
Sbjct: 165 FGMKVIAYDPFRNPELEDKG-VKYVSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMK 223

Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-----KSEQTF------EL 228
           KGV ++N ARG +VD  AL+++L  G   GA LDV  +E P        + F       L
Sbjct: 224 KGVIIINTARGSLVDTEALIEALDSGKIFGAGLDVLEDETPDLLKDLEGEIFKDALNALL 283

Query: 229 IKHPKVIVTPHLGASTKEA 247
            + P VI+TPH    T +A
Sbjct: 284 GRRPNVIITPHTAFYTDDA 302

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  182 bits (465), Expect = 3e-55
 Identities = 93/271 (34%), Positives = 134/271 (49%), Gaps = 19/271 (7%)

Query: 2   YDGLVVRSDTKVTAEVLQ---ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
           YDG+VV+       EV +      ++ +     GVD IDL  A   G+ + N P  +  +
Sbjct: 45  YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104

Query: 59  ACELTCSLISALSRNVPQGCQSLKEG--KWDRKLYTGTELYGKTLAVLGLGRIGREVALR 116
             E   +    L RN P+  + + +G  +W   L  G E+   T+ ++G GRIG   A  
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFRWAPGL-IGREIRDLTVGIIGTGRIGSAAAKI 163

Query: 117 MQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176
            + FG KVI +DP     +  K  +    LED+   AD I++H PL  +  +LINAE   
Sbjct: 164 FKGFGAKVIAYDP-YPNPELEKFLLYYDSLEDLLKQADIISLHVPLTKENHHLINAEAFA 222

Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF-CEEP--PK--SEQTF----- 226
           K K G  +VN ARGG+VD  AL+D+L  G   GAALD +  E     K  S +       
Sbjct: 223 KMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETGYFNKDWSGKEIEDEVL 282

Query: 227 -ELIKHPKVIVTPHLGASTKEAQIRVAVEIA 256
            ELI  P V++TPH+   T  A ++  VEI+
Sbjct: 283 KELIAMPNVLITPHIAFYTDTA-VKNMVEIS 312

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  176 bits (448), Expect = 4e-53
 Identities = 90/252 (35%), Positives = 137/252 (54%), Gaps = 20/252 (7%)

Query: 4   GLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
            +V   +T ++A ++ A   L+++   G G D IDL AA  +G+ V N PG       +L
Sbjct: 45  AVVTNGETGLSAALIAALPALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADL 104

Query: 63  TCSLISALSRNVPQGCQSLKEGKWDRKLYT-GTELYGKTLAVLGLGRIGREVALRMQAFG 121
              L+ A+ R +P   + ++ G+W +  +    ++ GK + ++GLGRIGR +A R++AFG
Sbjct: 105 AVGLLLAVLRRIPAADRFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFG 164

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA---DYITVHTPLIPQTKNLINAEVLKKC 178
           M++          D      ASL LE    LA   D + V  P  P T++L+NAEVL+  
Sbjct: 165 MEIAYHGR-RPKPDVPYRYYASL-LE----LAAESDVLVVACPGGPATRHLVNAEVLEAL 218

Query: 179 -KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP--PKSEQTFELIKHPKVI 235
              GV +VNVARG +VDE AL+ +L+ G   GA LDVF  EP  P       L+    V+
Sbjct: 219 GPDGV-LVNVARGSVVDEAALIAALQEGRIAGAGLDVFENEPNVPA-----ALLDLDNVV 272

Query: 236 VTPHLGASTKEA 247
           +TPH+ ++T E 
Sbjct: 273 LTPHIASATVET 284

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score =  175 bits (447), Expect = 9e-53
 Identities = 88/261 (33%), Positives = 133/261 (50%), Gaps = 35/261 (13%)

Query: 15  AEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPG--GNFISACELTCSLISALS 71
            E+L  A  L+ +     GVD +       + V++ NA G  G  I+  E     + A +
Sbjct: 51  PELLPAAPRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIA--EYVLGYMLAFA 108

Query: 72  RNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG----- 126
           R +P+  ++  E +W R+     EL GKT+ ++GLG IGRE+A R +AFGM+VIG     
Sbjct: 109 RKLPRYARNQAERRWQRRGPV-RELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSG 167

Query: 127 ------FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
                  D + + ++          L+++ P ADY+    PL P+T+ L NAE     K 
Sbjct: 168 RPAPPVVDEVYTPDE----------LDELLPEADYVVNALPLTPETRGLFNAERFAAMKP 217

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPH 239
           G  ++NV RG +VDE+AL+++L+ G   GAALDVF EEP P       L   P VI+TPH
Sbjct: 218 GAVLINVGRGSVVDEDALIEALESGRIAGAALDVFEEEPLPADS---PLWDLPNVIITPH 274

Query: 240 LGASTKEAQIRVAVEIAEQFI 260
           +   +          + E F+
Sbjct: 275 ISGDSP----SYPERVVEIFL 291

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  172 bits (437), Expect = 2e-51
 Identities = 87/255 (34%), Positives = 125/255 (49%), Gaps = 13/255 (5%)

Query: 22  NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSL 81
            L+++     GVD++ L     +GV+V N  G N  +  E   +LI AL++ + +    L
Sbjct: 60  RLKLIQVPSAGVDHLPL-ERLPEGVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDL 117

Query: 82  KEGKWDRKLYTGT---ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD--PMVSVEDA 136
           + G W  +        EL GKT+ +LG G IGRE+A  ++AFGM+VIG    P    E A
Sbjct: 118 RRGIWHGRAGEEPESKELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSP-KEDEGA 176

Query: 137 AKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDEN 196
             +   S  L++    AD + V  PL  QT+ LI A  L   K G  +VNV RG +VDE 
Sbjct: 177 DFVGTLS-DLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEE 235

Query: 197 ALLDSLKCGHCGGAALDVFCEEPPKSEQTFE----LIKHPKVIVTPHLGASTKEAQIRVA 252
           AL ++LK     GAA+DV+   P + +          + P VI++PH    T+E   R  
Sbjct: 236 ALYEALKERPIAGAAIDVWWRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETFRRRI 295

Query: 253 VEIAEQFIALANTNP 267
            E AE         P
Sbjct: 296 DEAAENIRRYLRGEP 310

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  171 bits (436), Expect = 3e-51
 Identities = 94/260 (36%), Positives = 140/260 (53%), Gaps = 14/260 (5%)

Query: 6   VVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTC 64
            + +   + A  L A+  L+++  A TG +N+DL AA  +G+ V N  G    S  + T 
Sbjct: 49  AISNKVALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTL 108

Query: 65  SLISALSRNVPQGCQSLKEGKWDRKL------YTGTELYGKTLAVLGLGRIGREVALRMQ 118
           +L+ AL+  +P   Q++  G+W +        +   EL GKTL +LG G +G  VA   +
Sbjct: 109 ALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAE 168

Query: 119 AFGMKV-IGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           AFGM+V IG  P              L L+++ P  D +T+H PL   T++LI A  L  
Sbjct: 169 AFGMRVLIGQLPGRPARPD------RLPLDELLPQVDALTLHCPLTEHTRHLIGARELAL 222

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
            K G  ++N ARGG+VDE AL D+L+ GH GGAA DV   EPP +         P++IVT
Sbjct: 223 MKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVT 282

Query: 238 PHLGASTKEAQIRVAVEIAE 257
           PH    ++EA+ R+  ++AE
Sbjct: 283 PHSAWGSREARQRIVGQLAE 302

Length = 317

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  171 bits (435), Expect = 8e-51
 Identities = 79/228 (34%), Positives = 131/228 (57%), Gaps = 12/228 (5%)

Query: 31  TGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKL 90
            G +N+DL AA   G+ V+  P  +  +  E   +L+ AL+R + +    ++EG +    
Sbjct: 77  AGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFSLDG 136

Query: 91  YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIW 150
             G +L+GKT+ V+G G+IG+  A  ++ FG +V+ +DP  +  + AKL +  + L+++ 
Sbjct: 137 LLGFDLHGKTVGVIGTGKIGQAFARILKGFGCRVLAYDPYPN-PELAKLGVEYVDLDELL 195

Query: 151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGA 210
             +D I++H PL P+T +LINAE + K K GV ++N +RGG++D  AL+++LK G  GG 
Sbjct: 196 AESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGGLIDTKALIEALKSGKIGGL 255

Query: 211 ALDVFCEEPP-----KSEQ-----TFE-LIKHPKVIVTPHLGASTKEA 247
            LDV+ EE        S++         L+  P V++T H    TKEA
Sbjct: 256 GLDVYEEEAGLFFEDHSDEIIQDDVLARLLSFPNVLITGHQAFFTKEA 303

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  170 bits (432), Expect = 2e-50
 Identities = 82/256 (32%), Positives = 136/256 (53%), Gaps = 11/256 (4%)

Query: 13  VTAEVL-QASNLQVVGR-AGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
           + AE+L +A  L+ V   AG+    +   A   +G+LV +A   N     E T + I   
Sbjct: 62  LDAELLARAPRLRAVVHAAGSVRGLVTD-AVWERGILVTSAADANAEPVAEFTLAAILLA 120

Query: 71  SRNVPQGCQSLKEGKWD--RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD 128
            R +P+   + + G+         G  LYG+T+ ++G GRIGR V   ++ FG++V+ +D
Sbjct: 121 LRRIPRFAAAYRAGRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYD 180

Query: 129 PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
           P +   +AA L +  + L+++   +D +++H PL P+T+ +I+A +L   + G   +N A
Sbjct: 181 PYLPAAEAAALGVELVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTA 240

Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST---K 245
           RG +VDE ALL  L+ G    AALDV   EP   +    L   P V++TPH+  ST   +
Sbjct: 241 RGALVDEAALLAELRSGR-LRAALDVTDPEPLPPDS--PLRTLPNVLLTPHIAGSTGDER 297

Query: 246 EAQIRVAVEIAEQFIA 261
                 A++  E+F+A
Sbjct: 298 RRLGDYALDELERFLA 313

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score =  168 bits (428), Expect = 1e-49
 Identities = 94/273 (34%), Positives = 143/273 (52%), Gaps = 16/273 (5%)

Query: 13  VTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALS 71
           +TAE +  A NL++   AG G D++DL AA  +G+ V    G N +S  E    +I  L 
Sbjct: 74  MTAERIAKAKNLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILV 133

Query: 72  RNVPQGCQSLKEGKWD-----RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG 126
           RN   G +   EG W+     ++ Y   +L GKT+  +G GRIG  V  R++ F + ++ 
Sbjct: 134 RNYVPGHEQAIEGGWNVADVVKRAY---DLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLY 190

Query: 127 FDPMVSVEDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRV 184
           +D     E+  K    +    LED+    D +T++ PL P+T+ L N E+L K KKG  +
Sbjct: 191 YDRHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYL 250

Query: 185 VNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST 244
           VN ARG I D  A+ ++L+ GH  G A DV+  +P   +  +  +  P   +TPH+  +T
Sbjct: 251 VNTARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTM--PNNAMTPHISGTT 308

Query: 245 KEAQIRVAV---EIAEQFIALANTNPQYTSIQG 274
            +AQ R A    EI E+F       P+Y  +QG
Sbjct: 309 LDAQARYAAGTKEILERFFEGEPFRPEYLIVQG 341

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  160 bits (407), Expect = 2e-46
 Identities = 83/261 (31%), Positives = 124/261 (47%), Gaps = 29/261 (11%)

Query: 3   DGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
           D L+VRS TKV   +L+ S ++ VG A  G D+ID      +G+   NAPG N  S  E 
Sbjct: 38  DVLLVRSVTKVNEALLEGSKVKFVGTATIGTDHIDTDYLKERGIGFANAPGCNANSVAEY 97

Query: 63  TCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM 122
              ++SAL     +   SLK               GKT+ ++G+G +G  +A R++A GM
Sbjct: 98  ---VLSALLVLAQRQGFSLK---------------GKTVGIVGVGNVGSRLARRLEALGM 139

Query: 123 KVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ----TKNLINAEVLKKC 178
            V+  DP  + E        SL  E++   AD IT+H PL       T +L++ + L   
Sbjct: 140 NVLLCDPPRA-EAEGDPGFVSL--EELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAAL 196

Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238
           K G  ++N +RG ++D  ALL  L+ G      LDV+  EP    +  + +     I TP
Sbjct: 197 KPGQILINASRGAVIDNQALLALLQRGKDLRVVLDVWENEPEIDLELLDKVD----IATP 252

Query: 239 HLGASTKEAQIRVAVEIAEQF 259
           H+   + E + R    I E  
Sbjct: 253 HIAGYSLEGKARGTEMIYEAL 273

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score =  157 bits (399), Expect = 1e-45
 Identities = 82/244 (33%), Positives = 124/244 (50%), Gaps = 25/244 (10%)

Query: 19  QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC 78
           +  NL+ +     GVD + L    +KG+L+ N  G + I   E     I  + + + +  
Sbjct: 57  KMKNLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAY 116

Query: 79  QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG----------FD 128
           ++ KE KW     +  ELYGKT+  LG G IG+E+A R++AFGMKVIG          FD
Sbjct: 117 KNQKEKKWKMDS-SLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVIGVNTSGRDVEYFD 175

Query: 129 PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
               +E+          L+++   AD +    PL  +T +L +    ++ KKG   +NV 
Sbjct: 176 KCYPLEE----------LDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINVG 225

Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHLGASTKEA 247
           RG  VDE+AL+++LK     GAALDVF EEP PK      L     V++TPH+   ++  
Sbjct: 226 RGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDS---PLWDLDNVLITPHISGVSEHF 282

Query: 248 QIRV 251
             R+
Sbjct: 283 NERL 286

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  153 bits (387), Expect = 5e-44
 Identities = 84/247 (34%), Positives = 123/247 (49%), Gaps = 17/247 (6%)

Query: 5   LVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELT 63
           +V+ S    T E L     L+++    TG +N+DL AA   G+ V N  G +  +  E  
Sbjct: 47  IVITSKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHV 106

Query: 64  CSLISALSRNVPQGCQSLKEGKW-DRKL-----YTGTELYGKTLAVLGLGRIGREVALRM 117
             +I AL  ++    +     +W   K      Y  T++ G TL V G G +G EV    
Sbjct: 107 LGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA 166

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           QA GMKV+        + A+         E++   AD +T+H PL   T+NLINAE L  
Sbjct: 167 QALGMKVL----YAEHKGASVCREGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLAL 222

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELI----KHPK 233
            K    ++N  RG +VDE ALLD+L+ G   GAALDV  +EPP+ +    LI    + P 
Sbjct: 223 MKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNP--LIQAAKRLPN 280

Query: 234 VIVTPHL 240
           +++TPH+
Sbjct: 281 LLITPHI 287

Length = 314

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  147 bits (373), Expect = 6e-42
 Identities = 80/254 (31%), Positives = 134/254 (52%), Gaps = 12/254 (4%)

Query: 12  KVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
            +  EVL Q  NL+++    TG +N+D+  A +KG+ V N  G +  S  + T +++ +L
Sbjct: 52  VIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSL 111

Query: 71  SRNVPQGCQSLKEGKWDR-KLYTGT-----ELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
              +    + +K G++    ++T       E+ GK   ++GLG IG+ VA   QAFG KV
Sbjct: 112 LGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKV 171

Query: 125 IGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRV 184
           + +      ++        + LE++   +D I++H PL  +TKNLI  + LK  K G  +
Sbjct: 172 VYYSTSGKNKNE---EYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAIL 228

Query: 185 VNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIK-HPKVIVTPHLGAS 243
           +NV RGGIV+E  L  +L       A LDV  +EP +       IK   K+++TPH+  +
Sbjct: 229 INVGRGGIVNEKDLAKALDEKDI-YAGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWA 287

Query: 244 TKEAQIRVAVEIAE 257
           +KEA+  +  ++ E
Sbjct: 288 SKEARKTLIEKVKE 301

Length = 311

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score =  147 bits (374), Expect = 2e-41
 Identities = 91/276 (32%), Positives = 142/276 (51%), Gaps = 24/276 (8%)

Query: 14  TAE-VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSR 72
           TAE + +A NL++   AG G D++DL AA+  G+ V    G N IS  E    +I AL R
Sbjct: 105 TAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVR 164

Query: 73  NVPQGCQSLKEGKWD-----RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
           N     +   EG W+      + Y   +L G T+ ++G GRIG  V  R++ F +K+   
Sbjct: 165 NYEPSHRQAVEGGWNIADCVSRSY---DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT 221

Query: 128 DPMVSVEDAAKLNIASLGL------EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           D     E+  +     LGL      + +  + D +T+H PL P+T++L +A+VL + K+G
Sbjct: 222 DRHRLPEEVEQ----ELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRG 277

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
             +VN ARG IVD +A++ +L+ GH  G A DV+  +P  ++  +  +      +TPH+ 
Sbjct: 278 SYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNG--MTPHIS 335

Query: 242 ASTKEAQIRVAV---EIAEQFIALANTNPQYTSIQG 274
            +T  AQ R A    EI E F        +Y  + G
Sbjct: 336 GTTLSAQARYAAGTREILECFFEGRPIRDEYLIVDG 371

Length = 385

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  143 bits (364), Expect = 2e-40
 Identities = 79/263 (30%), Positives = 126/263 (47%), Gaps = 21/263 (7%)

Query: 3   DGLVVRSDTKVTAEVLQ---ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           D ++VR +     E L+      ++ V     G ++IDL AA   G  +   P  +  + 
Sbjct: 46  DAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAI 105

Query: 60  CELTCSLISALSRNVPQGCQSLKEG--KWDRKLYTGTELYGKTLAVLGLGRIGREVALRM 117
            EL  +L   LSR+             K D  ++   E+   T+ ++G GRIG   A   
Sbjct: 106 AELAFTLAMTLSRHTAYTASRTANKNFKVDPFMF-SKEIRNSTVGIIGTGRIGLTAAKLF 164

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIP-QTKNLINAEVLK 176
           +  G KVIG+D   S  DAAK  +  + L+++   +D I++H P I  +   LIN E + 
Sbjct: 165 KGLGAKVIGYDIYPS--DAAKDVVTFVSLDELLKKSDIISLHVPYIKGKNDKLINKEFIS 222

Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTF---------- 226
           K K G  ++N ARG + DE A+L++L+ G   G   DV   E     + F          
Sbjct: 223 KMKDGAILINTARGELQDEEAILEALESGKLAGFGTDVLNNEKEIFFKDFDGDKIEDPVV 282

Query: 227 -ELIK-HPKVIVTPHLGASTKEA 247
            +L+  +P+V++TPH+G+ T EA
Sbjct: 283 EKLLDLYPRVLLTPHIGSYTDEA 305

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  143 bits (363), Expect = 2e-40
 Identities = 87/270 (32%), Positives = 133/270 (49%), Gaps = 20/270 (7%)

Query: 2   YDGLVVRSDTKVTAEVLQASNLQVVGRAGT---GVDNIDLTAATRKGVLVLNAP-GGNFI 57
           YDG+ +   +K++AE+L+      V    T   G D+IDL AA   G+ V N     N  
Sbjct: 45  YDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDHIDLDAAKELGIKVSNVTYSPN-- 102

Query: 58  SACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRM 117
           S  + T  L+    R   Q  +  +   +      G EL   T+ V+G GRIG+ V   +
Sbjct: 103 SVADYTVMLMLMALRKYKQIMKRAEVNDYSLGGLQGRELRNLTVGVIGTGRIGQAVIKNL 162

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
             FG K++ +DP  +  +  K     + L+ ++  +D IT+HTPL  +T +LIN E + K
Sbjct: 163 SGFGCKILAYDPYPN--EEVKKYAEYVDLDTLYKESDIITLHTPLTEETYHLINKESIAK 220

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE-----------PPKSEQTF 226
            K GV ++N ARG ++D  AL++ L+ G  GGAALDV   E              + +  
Sbjct: 221 MKDGVIIINTARGELIDTEALIEGLESGKIGGAALDVIEGEDGIYYNDRKGDILSNRELA 280

Query: 227 ELIKHPKVIVTPHLGASTKEAQIRVAVEIA 256
            L   P VI+TPH+   T +A +   VE +
Sbjct: 281 ILRSFPNVILTPHMAFYTDQA-VSDMVENS 309

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score =  143 bits (362), Expect = 6e-40
 Identities = 88/262 (33%), Positives = 141/262 (53%), Gaps = 26/262 (9%)

Query: 2   YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPG---GNFI 57
           YD  V +   ++ A+++ +AS ++++ + G G++ +D+ AAT+ G+ V   P    GN  
Sbjct: 62  YDICVPKM-MRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAA 120

Query: 58  SACELTCSLISALSRNVPQGCQSLKEGKWDRKL--YTGTELYGKTLAVLGLGRIGREVAL 115
           S  E+   L+  L R   +   SLK     R+L    G  L+GKT+ +LG G IG E+A 
Sbjct: 121 SCAEMAIYLMLGLLRKQNEMQISLK----ARRLGEPIGDTLFGKTVFILGYGAIGIELAK 176

Query: 116 RMQAFGMKVIGFDPMVSVEDAAKLNIASL----------GLEDIWPL---ADYITVHTPL 162
           R++ FG+K++      + E    L I +           G EDI+     AD + +   L
Sbjct: 177 RLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTL 236

Query: 163 IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS 222
             +T  ++N E L   KKG  +VN+ARGG++D +A+L +L+ GH GG A+DV   EP   
Sbjct: 237 TKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDP 296

Query: 223 EQTFELIKHPKVIVTPHLGAST 244
           +    ++KHP VI+TPH+   T
Sbjct: 297 DD--PILKHPNVIITPHVAGVT 316

Length = 347

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score =  142 bits (360), Expect = 2e-39
 Identities = 86/248 (34%), Positives = 129/248 (52%), Gaps = 13/248 (5%)

Query: 13  VTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALS 71
           VTAE ++ A NL+++  AG G D+IDL AA   G+ V    G N +S  E     I  L 
Sbjct: 111 VTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILL 170

Query: 72  RNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV----- 124
           RN   G   +  G+W+     Y   +L GKT+  +G GRIGR +  R++ F   +     
Sbjct: 171 RNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDR 230

Query: 125 IGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRV 184
           +  DP +  E  AK       L+ + P  D + ++TPL  +T+ + N E + K KKGV +
Sbjct: 231 LKMDPELEKETGAKF---EEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLI 287

Query: 185 VNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST 244
           VN ARG I+D  A+ D+   GH GG   DV+  +P   +  +  +  P   +TPH+  +T
Sbjct: 288 VNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYM--PNHAMTPHISGTT 345

Query: 245 KEAQIRVA 252
            +AQ+R A
Sbjct: 346 IDAQLRYA 353

Length = 386

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  127 bits (320), Expect = 3e-34
 Identities = 77/273 (28%), Positives = 130/273 (47%), Gaps = 16/273 (5%)

Query: 9   SDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLI 67
           S  KV A +L+    L+       G DN D+ A T + +L+++ P     +  +   +L+
Sbjct: 52  SGEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALV 111

Query: 68  SALSRNVPQGCQSLKEGKWDRKL---YTGTELYGKTLAVLGLGRIGREVALRMQ-AFGMK 123
            + +R V +  + +K G+W   +   + GT+++ KTL ++G+GRIG  +A R    F M 
Sbjct: 112 LSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMP 171

Query: 124 VIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
           ++        E   + N     L+ +   +D++ +  PL  +T +L  AE   K K    
Sbjct: 172 ILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAI 231

Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHLGA 242
            +N  RG +VDENAL+ +L+ G    A LDVF +EP         L+  P V+  PH+G+
Sbjct: 232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDS---PLLSLPNVVAVPHIGS 288

Query: 243 STKEAQIRVAVEIAEQFIALAN-------TNPQ 268
           +T E +  +A    +  I            NPQ
Sbjct: 289 ATHETRYNMAACAVDNLIDALQGKVEKNCVNPQ 321

Length = 323

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  125 bits (317), Expect = 1e-33
 Identities = 75/262 (28%), Positives = 111/262 (42%), Gaps = 38/262 (14%)

Query: 22  NLQVVGRAGTGVDNIDLTAATRKGVLV--LNAPG-----GNFISACELTCSLISALSRNV 74
           NL+ +   G GVD++ L       V +  L  PG       ++ A  L       L R++
Sbjct: 58  NLKAIFSLGAGVDHL-LADPDLPDVPIVRLVDPGLAQGMAEYVLAAVL------RLHRDM 110

Query: 75  PQGCQSLKEGKWDRKLY-TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG------- 126
            +     + G W         E     + VLGLG +G  VA R+ A G  V G       
Sbjct: 111 DRYAAQQRRGVWKPLPQRPAAER---RVGVLGLGELGAAVARRLAALGFPVSGWSRSPKD 167

Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
            + +              GL+      D +    PL P+T+ ++NAE+L +  +G  ++N
Sbjct: 168 IEGVTCFHGEE-------GLDAFLAQTDILVCLLPLTPETRGILNAELLARLPRGAALIN 220

Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKE 246
           V RG  + E  LL +L  GH  GA LDVF +EP  ++      +HP+V VTPH+ A T  
Sbjct: 221 VGRGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPL--WRHPRVTVTPHIAAIT-- 276

Query: 247 AQIRVAVE-IAEQFIALANTNP 267
                A   +AE    L    P
Sbjct: 277 -DPDSAAAQVAENIRRLEAGEP 297

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  123 bits (310), Expect = 8e-33
 Identities = 69/222 (31%), Positives = 113/222 (50%), Gaps = 20/222 (9%)

Query: 45  GVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKE-GKWDRKLYTGTELYGKTLAV 103
           G +V  A G    +  E   + I A ++ +P+    +K   +W R+      L G TL +
Sbjct: 85  GPVVTCARGVAAEAIAEFVLAAILAAAKRLPE--IWVKGAEQWRRE--PLGSLAGSTLGI 140

Query: 104 LGLGRIGREVALRMQAFGMKVI------GFDPMVSVEDAAKLNIASLGLEDIWPLADYIT 157
           +G G IG+ +A R  A GM+V+          +  VE AA L        +++  +D++ 
Sbjct: 141 VGFGAIGQALARRALALGMRVLALRRSGRPSDVPGVEAAADL-------AELFARSDHLV 193

Query: 158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE 217
           +  PL P+T++LINA+VL + K G+ ++N+ARGG+VD+ ALL++L  G    A+LDV   
Sbjct: 194 LAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDP 253

Query: 218 EPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQF 259
           EP           HP+V ++PH  A   + +  +A    E  
Sbjct: 254 EPLPEGHPL--YTHPRVRLSPHTSAIAPDGRRNLADRFLENL 293

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  121 bits (305), Expect = 4e-32
 Identities = 73/264 (27%), Positives = 118/264 (44%), Gaps = 26/264 (9%)

Query: 9   SDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLIS 68
           +   V   +     L+VV     G D +       +GV + NA G +  S  EL  +LI 
Sbjct: 47  AAPPVLEALRALPRLRVVQTLSAGYDGV--LPLLPEGVTLCNARGVHDASTAELAVALIL 104

Query: 69  ALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF- 127
           A  R +P+  ++   G+W+ +      L  + + ++G G IGR +  R+  F ++V    
Sbjct: 105 ASLRGLPRFVRAQARGRWEPR--RTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTRVA 162

Query: 128 ------DPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
                 + +  +++          L  + P AD + +  PL  +T+ L++AE L +   G
Sbjct: 163 RTARPGEQVHGIDE----------LPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDG 212

Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHL 240
             +VNVARG +VD +AL+  L  G    AALDV   EP P       L   P V++TPH+
Sbjct: 213 ALLVNVARGPVVDTDALVAELASGRL-RAALDVTDPEPLPPGH---PLWSAPGVLITPHV 268

Query: 241 GASTKEAQIRVAVEIAEQFIALAN 264
           G +T     R    +  Q    A 
Sbjct: 269 GGATPAFLPRAYALVRRQLRRYAA 292

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  120 bits (303), Expect = 2e-31
 Identities = 80/271 (29%), Positives = 112/271 (41%), Gaps = 49/271 (18%)

Query: 19  QASNLQVVGRAGTGVDN-IDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG 77
              NL++V     G D+ +         V +  A G +     E        LS +  Q 
Sbjct: 51  DVPNLRLVQLFSAGADHWLGHPLYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHFLQY 110

Query: 78  CQSLKEGKWDRKL--YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-------- 127
            +  KE  W R+   Y+  +  GK + +LG G IGR+ A   QA GM+V  +        
Sbjct: 111 IELQKEQTWGRRQEAYSVEDSVGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPTP 170

Query: 128 --------------DPMVSV-------EDAAKLN-IASLGLEDIWPLADYITVHTPLIPQ 165
                         DP  S+        D A L+      L       D + V  PL P 
Sbjct: 171 ESRKDDGYIVPGTGDPDGSIPSAWFSGTDKASLHEFLRQDL-------DLLVVSLPLTPA 223

Query: 166 TKNLINAE---VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PK 221
           TK+L+ AE   +L K  +   V N+ARG +VD +AL+ +L+ G   GAALDV   EP P 
Sbjct: 224 TKHLLGAEEFEILAK--RKTFVSNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPA 281

Query: 222 SEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
                 L   P VI+TPH+   T+E   R  
Sbjct: 282 DH---PLWSAPNVIITPHVSWQTQEYFDRAL 309

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  119 bits (301), Expect = 2e-31
 Identities = 61/168 (36%), Positives = 92/168 (54%), Gaps = 7/168 (4%)

Query: 86  WDRKLYT--GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS 143
           WD        T L G T+A++G G IGR +   +  FG KVI  +      + A   + +
Sbjct: 111 WDPAEEDDLVTLLRGSTVAIVGAGGIGRALIPLLAPFGAKVIAVNRSGRPVEGADETVPA 170

Query: 144 LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLK 203
             L+++WP AD++ +  PL P+T++L++A  L   K    +VNVARG +VD +AL+D+L+
Sbjct: 171 DRLDEVWPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALR 230

Query: 204 CGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHLGASTKEAQIR 250
            G   GAALDV   EP P     + L   P  ++TPH+ A+T E    
Sbjct: 231 SGEIAGAALDVTDPEPLPDGHPLWSL---PNALITPHV-ANTPEVIRP 274

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score =  120 bits (302), Expect = 2e-31
 Identities = 74/230 (32%), Positives = 110/230 (47%), Gaps = 16/230 (6%)

Query: 32  GVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEG--KWDRK 89
           G D  DL  AT+  +++ N P  +  S  E T +    L R+  Q    ++E   +W+  
Sbjct: 79  GFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPP 138

Query: 90  LYTGTELYGKTLAVLGLGRIGREVA-LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLED 148
           +     +    +AV+G GRIG  VA +  + +G  V+ +DP  + + A  ++     +E+
Sbjct: 139 I-LSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAATYVDYKD-TIEE 196

Query: 149 IWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG 208
               AD +T+H P       L NA++ K  KKG   VN ARG +VD  ALLD+L  G   
Sbjct: 197 AVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIK 256

Query: 209 GAALDVFCEEPP-----KSEQTF------ELIKHPKVIVTPHLGASTKEA 247
           GAALD +  E P     +  QT        LI    VI+TPH+   T  A
Sbjct: 257 GAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAA 306

Length = 332

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score =  110 bits (276), Expect = 5e-28
 Identities = 74/251 (29%), Positives = 126/251 (50%), Gaps = 22/251 (8%)

Query: 15  AEVLQASNLQVVGRA-------GTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLI 67
           AE +      V G+          GVD+ID++      VL  NA G   IS  E   +L+
Sbjct: 35  AEAILIKGRYVPGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALL 93

Query: 68  SALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
            A ++N+ +   ++K G + +       LY K+L +LG G IGR VAL  +AFGM +  +
Sbjct: 94  LAWAKNICENNYNMKNGNFKQSPTK--LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAY 151

Query: 128 DPMVSVEDAAKLNIASLGLE--DIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
                        I+S+ +E  DI   +D++ +  PL  +T+ +IN+++L   +KG+ ++
Sbjct: 152 -----TRSYVNDGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAII 206

Query: 186 NVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTK 245
           NVAR  +VD+N +L+ L+  +      DV+  EP  +E   +      VI++PH+     
Sbjct: 207 NVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITETNPD-----NVILSPHVAGGMS 261

Query: 246 EAQIRVAVEIA 256
              ++ AV +A
Sbjct: 262 GEIMQPAVALA 272

Length = 303

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score =  108 bits (273), Expect = 5e-27
 Identities = 77/288 (26%), Positives = 126/288 (43%), Gaps = 38/288 (13%)

Query: 3   DGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
           D L+VRS T+V   +L+ S ++ VG    G D++DL      G+   +APG N       
Sbjct: 39  DVLLVRSVTRVDRALLEGSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCN------- 91

Query: 63  TCSLISALSRNVPQGCQS----LKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQ 118
                   +R V          L E +       G +L  +T  V+G G +G  +   ++
Sbjct: 92  --------ARGVVDYVLGSLLTLAERE-------GVDLAERTYGVVGAGHVGGRLVRVLR 136

Query: 119 AFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ----TKNLINAEV 174
             G KV+  DP       A+ +   + LE I    D I++HTPL  +    T++L++   
Sbjct: 137 GLGWKVLVCDP---PRQEAEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAF 193

Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           L   + G  ++N +RG +VD  AL ++L  G    A LDV+  EP    +  +L      
Sbjct: 194 LASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLC----T 249

Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALA 282
           I TPH+   + + + R   +I +          +  S+  +L  P LA
Sbjct: 250 IATPHIAGYSLDGKARGTAQIYQALCRFFGIPARV-SLTDLLPPPWLA 296

Length = 381

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  104 bits (260), Expect = 3e-25
 Identities = 96/332 (28%), Positives = 149/332 (44%), Gaps = 33/332 (9%)

Query: 1   KYDGLVVRSDTKVTAEVLQASNLQVVGRA----GTGVDNIDLTAATRKGVLVLNAPGGNF 56
           K DG V+   T+   E L ++  +  G+A      G +N+D+ AA + G+ V N PG   
Sbjct: 62  KCDG-VIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 57  ISACELTCSLISALSRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREV 113
            +  EL  SL  A +R + +  + ++ G    W   L+ G  L G+T+ V+G GRIG   
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 114 ALRM-QAFGMKVIGFDPMVSV-----------------EDAAKLNIASLGLEDIWPLADY 155
           A  M + F M +I +D   S                  E       AS  +E++   AD 
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRAS-SMEEVLREADV 239

Query: 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF 215
           I++H  L   T +LIN E L   KK   +VN +RG ++DE AL++ LK        LDVF
Sbjct: 240 ISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVF 299

Query: 216 CEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGV 275
            +EP       ++      +V PH+ +++K  +  +A   A   +      P +     V
Sbjct: 300 EDEPYMKPGLADM---KNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPNRV 356

Query: 276 LNAPALAASRNPENTS-WISLARSLGKISSQL 306
              P L  +  P   S  I  A++LG   S+L
Sbjct: 357 --EPFLNENAPPPAASPSIVNAKALGLPVSKL 386

Length = 386

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score =  101 bits (252), Expect = 2e-24
 Identities = 67/280 (23%), Positives = 123/280 (43%), Gaps = 42/280 (15%)

Query: 2   YDGLVVRSDTKVTAEV---LQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
           YDG+      K+  +V   L++  ++ + +   G D  DL  A +  +++ N P  +  +
Sbjct: 46  YDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPET 105

Query: 59  ACELTCSLISALSRNVPQGCQSLKEG--KWDRKLYTGTELYGKTLAVLGLGRIGREVALR 116
             E + S+   L R  P   + ++     W  ++ +   +   T+A++G GRIG   A  
Sbjct: 106 IAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMS-KPVKNMTVAIIGTGRIGAATAKI 164

Query: 117 MQAFGMKVIGFDPMV-----------SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ 165
              FG  +  +D              SV++A K              AD I++H P   +
Sbjct: 165 YAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKD-------------ADIISLHVPANKE 211

Query: 166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP----- 220
           + +L +  +    KKG  +VN ARG +++   L+ ++  G   GAA+D +  E       
Sbjct: 212 SYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTND 271

Query: 221 ------KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVE 254
                   +   ELI+H +++VTPH+   + EA ++  VE
Sbjct: 272 WTNKDIDDKTLLELIEHERILVTPHIAFFSDEA-VQNLVE 310

Length = 330

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 99.6 bits (248), Expect = 1e-23
 Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 34/283 (12%)

Query: 3   DGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
           D L+VRS TKV   +L    ++ VG A  G D++D     + G+    APG N I+  E 
Sbjct: 39  DALMVRSVTKVNESLLAGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEY 98

Query: 63  TCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM 122
             S +  L+                     G  L+ +T+ ++G+G +GR +  R++A G+
Sbjct: 99  VFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARLEALGI 140

Query: 123 KVIGFD-PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIP----QTKNLINAEVLKK 177
           K +  D P     D          L+++   AD +T HTPL      +T +L + ++++ 
Sbjct: 141 KTLLCDPPRADRGDEGDFR----SLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRS 196

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV-IV 236
            K G  ++N  RG +VD  ALL  L  G      LDV+  EP   E   EL+K  KV I 
Sbjct: 197 LKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP---ELNVELLK--KVDIG 251

Query: 237 TPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP 279
           TPH+   T E + R   ++ E +      + Q+ ++  +L AP
Sbjct: 252 TPHIAGYTLEGKARGTTQVFEAYSKFIG-HEQHVALDTLLPAP 293

Length = 378

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 92.4 bits (230), Expect = 2e-21
 Identities = 62/198 (31%), Positives = 94/198 (47%), Gaps = 32/198 (16%)

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKL----------YTGTELYGKTLAVLGLGRIG 110
           E T +LI A  R + +  ++ +E +W  +L             T L G  + + G G IG
Sbjct: 97  EHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTT-LLGARVLIWGFGSIG 155

Query: 111 REVALRMQAFGMKVIGFD---------PMVSVEDAAKLNIASLGLEDIWPLADYITVHTP 161
           + +A  + A G +V G           P+V+ ++          L ++ P  D + +  P
Sbjct: 156 QRLAPLLTALGARVTGVARSAGERAGFPVVAEDE----------LPELLPETDVLVMILP 205

Query: 162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK 221
             P T + ++AEVL    K   VVNV RG  VDE+AL+ +L+ G  GGAALDV   EP  
Sbjct: 206 ATPSTAHALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLP 265

Query: 222 SEQTFELIKHPKVIVTPH 239
           +     L   P +I+TPH
Sbjct: 266 ASSP--LWDAPNLILTPH 281

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 83.8 bits (207), Expect = 2e-18
 Identities = 64/249 (25%), Positives = 101/249 (40%), Gaps = 24/249 (9%)

Query: 11  TKVTAEVLQASNLQVVGRAGTGVDNIDLT-AATRKGVLVLNAPGGNFISACELTCSLISA 69
           T     ++Q    +++     G D+ DLT A  R G+  +   G        LT + I A
Sbjct: 76  TNAEYALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPL---LTSNSIGA 132

Query: 70  LSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
              +V Q      E +   +L    ++ GKT+ V+G G +G+E A  ++  G +V+  D 
Sbjct: 133 GELSV-QFIARFLEVQQPGRLGGAPDVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDI 191

Query: 130 MVSVEDAAKLNIASLG------LEDIWPLADYITVHTPLIPQTKN-LINAEVLKKCKKGV 182
            V     A   +  LG      LE+    AD I   T L  +    L+  E++++ K G 
Sbjct: 192 NV----EALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELVEQMKPGS 247

Query: 183 RVVNVARGGIVDENALL-DSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
            +VNVA G +    AL    L+ GH      DV    P  +              T  L 
Sbjct: 248 VIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGPGCAMGV-------PWDATLRLA 300

Query: 242 ASTKEAQIR 250
           A+T  A ++
Sbjct: 301 ANTLPALVK 309

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 41/101 (40%), Positives = 59/101 (58%), Gaps = 5/101 (4%)

Query: 161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP 220
           P  P+T  +IN ++L++   G  ++N+ARG  V E+ LL +L  G   GA LDVF  EP 
Sbjct: 199 PNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPL 258

Query: 221 KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIA 261
             E    L +HP+V +TPH+ A T+ A+   AVE   + IA
Sbjct: 259 PPESP--LWQHPRVAITPHVAAVTRPAE---AVEYISRTIA 294

Length = 312

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 50.0 bits (120), Expect = 6e-07
 Identities = 62/261 (23%), Positives = 98/261 (37%), Gaps = 40/261 (15%)

Query: 3   DGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVD----NIDLTAATRKGVLVLNA-----P 52
           D ++V   T++  EVL+A  N++ +G   +       N+D+ AA   G+ V         
Sbjct: 48  DCVLVSYTTQIDEEVLEACPNIKYIGMCCSLYSEESANVDIAAARENGITVTGIRDYGDE 107

Query: 53  G-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGR 111
           G   ++        LI  L              +W  +     EL G  + ++GLG  G+
Sbjct: 108 GVVEYV-----ISELIRLL--------HGFGGKQWKEE---PRELTGLKVGIIGLGTTGQ 151

Query: 112 EVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKN--L 169
            +A  +  FG  V  +      +  AK  I  L L ++    D I    P     KN  L
Sbjct: 152 MIADALSFFGADVYYYSRTRKPDAEAK-GIRYLPLNELLKTVDVICTCLP-----KNVIL 205

Query: 170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELI 229
           +  E  +    G  + N + G   +  AL   LK    G    D         E   EL+
Sbjct: 206 LGEEEFELLGDGKILFNTSLGPSFEVEALKKWLK--ASGYNIFDCDTAGALGDE---ELL 260

Query: 230 KHPKVIVTPHLGASTKEAQIR 250
           ++P VI T      T++A  R
Sbjct: 261 RYPNVICTNKSAGWTRQAFER 281

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|129544 TIGR00452, TIGR00452, tRNA (mo5U34)-methyltransferase

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 14/86 (16%)

Query: 85  KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMVSV----EDAAKL 139
           KWDR L   + L G+T+  +G G  G  +  RM   G K ++G DP V      E   KL
Sbjct: 109 KWDRVLPHLSPLKGRTILDVGCGS-GYHM-WRMLGHGAKSLVGIDPTVLFLCQFEAVRKL 166

Query: 140 -------NIASLGLEDIWPLADYITV 158
                   +  LG+E +  L  + TV
Sbjct: 167 LDNDKRAILEPLGIEQLHELYAFDTV 192

This model describes a set of proteins with homology in its central region to a large number of methyltransferases active on a variety of substrates. The similarity includes a motif resembling ILDVGCG[SG]G. Known examples to date are restricted to the proteobacteria [Unknown function, Enzymes of unknown specificity]. Length = 314

>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score = 37.0 bits (87), Expect = 0.004
 Identities = 31/114 (27%), Positives = 46/114 (40%), Gaps = 39/114 (34%)

Query: 92  TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI---------------GFDPMVSVEDA 136
           T   L GK + V G G +G+ VA R++  G +VI               GF+ M  +E+A
Sbjct: 17  TNVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTEIDPIRALEAAMDGFEVM-KMEEA 75

Query: 137 AKLNIASLGLEDIWPLAD-YITVHTPLIPQT--KNLINAEVLKKCKKGVRVVNV 187
           AK              AD ++T        T  K++I  E  +  K G  + N 
Sbjct: 76  AK-------------RADIFVTA-------TGNKDVITREHFRAMKDGAILANA 109

Length = 162

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	333
KOG0068|consensus	406		100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
PLN02306	386	hydroxypyruvate reductase	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
KOG0069|consensus	336		100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067|consensus	435		100.0
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.89
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.85
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.76
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.68
PLN02494	477	adenosylhomocysteinase	99.67
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.61
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.59
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.5
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.49
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.47
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.38
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.38
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.38
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.34
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.32
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.29
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.26
PLN02712	667	arogenate dehydrogenase	99.26
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.25
PLN02256	304	arogenate dehydrogenase	99.23
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.22
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.19
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.13
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	99.11
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	99.1
PLN02858	1378	fructose-bisphosphate aldolase	99.09
KOG0409|consensus	327		99.09
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.06
PRK05225	487	ketol-acid reductoisomerase; Validated	99.06
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.05
PLN02858	1378	fructose-bisphosphate aldolase	99.05
PRK08655	437	prephenate dehydrogenase; Provisional	99.04
PRK07417	279	arogenate dehydrogenase; Reviewed	99.01
PLN02712	667	arogenate dehydrogenase	99.01
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.99
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.97
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.95
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.95
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.94
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.93
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.92
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.92
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.9
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.9
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.88
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.88
PLN02688	266	pyrroline-5-carboxylate reductase	98.87
PRK06545	359	prephenate dehydrogenase; Validated	98.85
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.84
PRK08507	275	prephenate dehydrogenase; Validated	98.81
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.81
PRK08818	370	prephenate dehydrogenase; Provisional	98.8
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.77
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.77
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.75
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.71
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.71
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.71
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.71
KOG1370|consensus	434		98.69
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.69
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	98.67
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.67
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.67
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.67
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.67
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.66
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.66
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.66
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.64
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.64
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.64
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.63
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.63
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.61
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	98.58
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
PRK07680	273	late competence protein ComER; Validated	98.52
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.5
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.5
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.49
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.48
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.46
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	98.45
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.44
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.4
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.4
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.38
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	98.38
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	98.37
KOG2380|consensus	480		98.31
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	98.31
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.3
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.3
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	98.3
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	98.29
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.29
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.27
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.25
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	98.25
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	98.25
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.22
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.21
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	98.2
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	98.2
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	98.19
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.18
PLN02353	473	probable UDP-glucose 6-dehydrogenase	98.12
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	98.08
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	98.05
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.05
PTZ00431	260	pyrroline carboxylate reductase; Provisional	98.03
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.02
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.0
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.0
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.99
PLN00203	519	glutamyl-tRNA reductase	97.96
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.95
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.95
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.91
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	97.9
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.89
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.89
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.88
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.86
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.85
PRK06141	314	ornithine cyclodeaminase; Validated	97.85
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.84
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	97.82
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.81
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.81
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	97.8
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.79
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.75
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	97.75
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	97.75
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.73
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.72
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.72
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.71
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.71
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.71
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.7
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	97.69
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.68
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.66
PRK14031	444	glutamate dehydrogenase; Provisional	97.65
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	97.65
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.64
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.63
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.62
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.62
PRK07340	304	ornithine cyclodeaminase; Validated	97.62
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.59
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
PRK14982	340	acyl-ACP reductase; Provisional	97.58
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	97.57
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.57
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.57
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.57
PRK09414	445	glutamate dehydrogenase; Provisional	97.56
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.56
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.55
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.53
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.52
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.51
PRK14030	445	glutamate dehydrogenase; Provisional	97.5
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.5
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.49
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.49
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	97.47
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.47
PTZ00117	319	malate dehydrogenase; Provisional	97.45
PLN02477	410	glutamate dehydrogenase	97.45
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.45
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.45
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.45
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.44
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.42
PRK06719	157	precorrin-2 dehydrogenase; Validated	97.42
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.42
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.39
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.37
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.36
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.36
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.34
PRK06444	197	prephenate dehydrogenase; Provisional	97.31
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	97.31
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.3
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.29
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.28
PRK06823	315	ornithine cyclodeaminase; Validated	97.28
PRK08618	325	ornithine cyclodeaminase; Validated	97.27
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.25
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.25
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.25
PRK08291	330	ectoine utilization protein EutC; Validated	97.22
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.22
PRK06046	326	alanine dehydrogenase; Validated	97.21
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.21
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.2
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.2
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.15
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	97.14
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.13
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.12
KOG2304|consensus	298		97.11
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	97.09
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.07
KOG0023|consensus	360		97.07
PRK06223	307	malate dehydrogenase; Reviewed	97.07
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.06
PTZ00082	321	L-lactate dehydrogenase; Provisional	97.04
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	97.03
PRK06199	379	ornithine cyclodeaminase; Validated	97.03
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.01
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	97.01
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.99
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.96
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	96.96
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.95
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	96.94
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.94
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.92
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.91
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.91
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.89
PRK06407	301	ornithine cyclodeaminase; Provisional	96.89
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.89
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.89
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.88
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.87
PRK09496	453	trkA potassium transporter peripheral membrane com	96.87
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	96.86
COG0281	432	SfcA Malic enzyme [Energy production and conversio	96.85
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.85
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.84
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.84
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.83
KOG2653|consensus	487		96.82
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	96.8
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.79
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	96.79
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.76
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	96.75
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	96.74
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.73
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	96.72
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.71
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.71
PRK12862	763	malic enzyme; Reviewed	96.71
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.68
PRK02102	331	ornithine carbamoyltransferase; Validated	96.68
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.65
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.64
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.63
PLN02527	306	aspartate carbamoyltransferase	96.62
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.62
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.61
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.59
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.58
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	96.58
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.58
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.58
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.56
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.56
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.56
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	96.56
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.55
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.55
PRK07589	346	ornithine cyclodeaminase; Validated	96.54
PRK12861	764	malic enzyme; Reviewed	96.52
PRK10669	558	putative cation:proton antiport protein; Provision	96.52
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.49
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.47
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.45
PRK12548	289	shikimate 5-dehydrogenase; Provisional	96.44
PRK11579	346	putative oxidoreductase; Provisional	96.38
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	96.36
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.35
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	96.35
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.34
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.33
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.33
PRK10637	457	cysG siroheme synthase; Provisional	96.3
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	96.3
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.29
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	96.27
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.23
PLN02342	348	ornithine carbamoyltransferase	96.22
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.22
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	96.21
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	96.2
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.19
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	96.19
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	96.18
PRK04148	134	hypothetical protein; Provisional	96.18
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.17
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	96.15
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	96.13
PRK05562	223	precorrin-2 dehydrogenase; Provisional	96.13
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	96.09
COG0673	342	MviM Predicted dehydrogenases and related proteins	96.09
PRK06270	341	homoserine dehydrogenase; Provisional	96.07
TIGR00036	266	dapB dihydrodipicolinate reductase.	96.04
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.99
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	95.93
PRK14804	311	ornithine carbamoyltransferase; Provisional	95.91
PRK08192	338	aspartate carbamoyltransferase; Provisional	95.88
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.88
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.85
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.84
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.83
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	95.8
COG5322	351	Predicted dehydrogenase [General function predicti	95.79
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.78
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.76
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.7
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.67
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.66
PRK09496	453	trkA potassium transporter peripheral membrane com	95.64
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.55
PLN02948	577	phosphoribosylaminoimidazole carboxylase	95.52
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	95.49
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.43
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.43
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	95.42
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	95.41
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.34
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.32
KOG2711|consensus	372		95.31
PRK05086	312	malate dehydrogenase; Provisional	95.26
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	95.25
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.23
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.22
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	95.2
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.17
PRK10206	344	putative oxidoreductase; Provisional	95.13
PTZ00325	321	malate dehydrogenase; Provisional	95.12
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.11
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.1
PLN02602	350	lactate dehydrogenase	95.09
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.06
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	95.05
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.04
KOG0022|consensus	375		95.03
PRK08223	287	hypothetical protein; Validated	95.03
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.01
PLN02586	360	probable cinnamyl alcohol dehydrogenase	94.98
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	94.97
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	94.96
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	94.96
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	94.93
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	94.89
CHL00194	317	ycf39 Ycf39; Provisional	94.88
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	94.87
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	94.83
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	94.8
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	94.75
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.74
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	94.73
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	94.71
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	94.7
PRK15076	431	alpha-galactosidase; Provisional	94.69
PRK05786	238	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	94.69
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	94.68
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	94.65
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	94.64
PRK07411	390	hypothetical protein; Validated	94.64
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.64
PLN02178	375	cinnamyl-alcohol dehydrogenase	94.63
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.62
PRK07877	722	hypothetical protein; Provisional	94.62
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.61
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	94.57
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.56
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	94.56
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	94.51
PRK05442	326	malate dehydrogenase; Provisional	94.49
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.46
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	94.44
PLN02383	344	aspartate semialdehyde dehydrogenase	94.42
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	94.41
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	94.4
TIGR03736	244	PRTRC_ThiF PRTRC system ThiF family protein. A nov	94.39
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	94.32
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	94.31
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	94.26
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	94.14
PLN00106	323	malate dehydrogenase	94.13
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.11
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	94.04
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	94.04
PRK06349	426	homoserine dehydrogenase; Provisional	93.98
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	93.96
PRK06182	273	short chain dehydrogenase; Validated	93.96
PRK14851	679	hypothetical protein; Provisional	93.94
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	93.91
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.9
PLN03209	576	translocon at the inner envelope of chloroplast su	93.8
PRK06392	326	homoserine dehydrogenase; Provisional	93.77
PRK13529	563	malate dehydrogenase; Provisional	93.76
PRK10537	393	voltage-gated potassium channel; Provisional	93.68
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	93.63
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	93.61
PRK12814	652	putative NADPH-dependent glutamate synthase small	93.61
PRK14805	302	ornithine carbamoyltransferase; Provisional	93.58
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	93.57
COG2344	211	AT-rich DNA-binding protein [General function pred	93.56
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	93.53
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	93.51
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.44
PLN02514	357	cinnamyl-alcohol dehydrogenase	93.43
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	93.43
PLN02740	381	Alcohol dehydrogenase-like	93.38
COG2910	211	Putative NADH-flavin reductase [General function p	93.36
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	93.36
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	93.33
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.33
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	93.25
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	93.22
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	93.22
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.13
KOG0024|consensus	354		93.08
PLN00112	444	malate dehydrogenase (NADP); Provisional	93.08
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	93.06
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	93.02
PLN03129	581	NADP-dependent malic enzyme; Provisional	93.0
PRK14852	989	hypothetical protein; Provisional	92.97
TIGR03570	201	NeuD_NnaD sugar O-acyltransferase, sialic acid O-a	92.92
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	92.9
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	92.85
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	92.83
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	92.82
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	92.81
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	92.81
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	92.75
PRK12779	944	putative bifunctional glutamate synthase subunit b	92.75
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	92.71
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	92.69
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	92.66
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	92.62
PRK08374	336	homoserine dehydrogenase; Provisional	92.56
TIGR01832	248	kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod	92.54
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	92.5
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	92.47
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	92.47
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	92.47
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	92.46
PRK06550	235	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.45
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	92.41
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	92.4
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	92.33
PRK07523	255	gluconate 5-dehydrogenase; Provisional	92.31
PLN02827	378	Alcohol dehydrogenase-like	92.3
PTZ00317	559	NADP-dependent malic enzyme; Provisional	92.22
KOG4230|consensus	935		92.19
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	92.16
PLN02686	367	cinnamoyl-CoA reductase	92.15
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	92.14
KOG2741|consensus	351		92.07
PRK08328	231	hypothetical protein; Provisional	92.04
PRK10083	339	putative oxidoreductase; Provisional	92.01
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.97
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	91.97
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	91.96
PLN02657	390	3,8-divinyl protochlorophyllide a 8-vinyl reductas	91.94
PLN02427	386	UDP-apiose/xylose synthase	91.9
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	91.9
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	91.89
PLN02214	342	cinnamoyl-CoA reductase	91.88

>KOG0068|consensus

Probab=100.00  E-value=1.4e-83  Score=601.12  Aligned_cols=327  Identities=51%  Similarity=0.785  Sum_probs=310.4

Q ss_pred             CceEEEEeCCCCCCHHHhcccC--cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN--LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC   78 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~--Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~   78 (333)
                      ++|+++|||.|++|+++|+++.  ||+|+|+|+|+||||+++|+++||.|+|+|.+|+.++|||+++|+++++|+++++.
T Consensus        47 ~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~  126 (406)
T KOG0068|consen   47 DCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQAS  126 (406)
T ss_pred             cCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhh
Confidence            5899999999999999999654  99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEE
Q psy6348          79 QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITV  158 (333)
Q Consensus        79 ~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l  158 (333)
                      .++|+|+|+|..+.|.||+|||+||+|+|+||+.+|++++++||+|++|||....+.++..|++.++++|+++.||||++
T Consensus       127 ~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitl  206 (406)
T KOG0068|consen  127 ASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITL  206 (406)
T ss_pred             eeeecCceeecceeeeEEeccEEEEeecccchHHHHHHHHhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEcc
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP  238 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TP  238 (333)
                      |+|++|+|++|++.+.|+.||+|..+||++||++||+++|.+||++|+++|||+|||+.||+..-..+.|.+||||++||
T Consensus       207 H~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~Tp  286 (406)
T KOG0068|consen  207 HVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTP  286 (406)
T ss_pred             ccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecC
Confidence            99999999999999999999999999999999999999999999999999999999999998753346899999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcccCCCCCchHHHHHHHhHHHHHHhcCC--------
Q psy6348         239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTS--------  310 (333)
Q Consensus       239 Hi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~--------  310 (333)
                      |+|++|.|+|.+++.++++++.+|.+|     ...++||.|.++.+.+++.+||+.++|++|++.-|++.+.        
T Consensus       287 HlgasT~EAq~~iaievaea~~~~~~~-----~~~g~Vna~~v~~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~  361 (406)
T KOG0068|consen  287 HLGASTEEAQSRIAIEVAEAVSDYING-----NSAGSVNAPEVALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHN  361 (406)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHhcc-----CccceechhhhhhhhhhccCchhHHHHHHhhhhHHHhcCCccceeeee
Confidence            999999999999999999999999999     4889999999999999999999999999999999998654        


Q ss_pred             ---CcCCcceeEeeeccCCcccCCC
Q psy6348         311 ---TFSSTAFSLVTQDITNVTSSTM  332 (333)
Q Consensus       311 ---~~~~~~~~~~~~~~~~~~~~~~  332 (333)
                         .++...-.|+.++|++...|.+
T Consensus       362 ~~~s~~~~d~~~l~A~i~~~~~e~i  386 (406)
T KOG0068|consen  362 IYKSFSDGDIALLRADISKGIIEPI  386 (406)
T ss_pred             hhhhccccceeeeHHHHhccCcchH
Confidence               3344566788999998877654

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.7e-75  Score=558.40  Aligned_cols=274  Identities=51%  Similarity=0.794  Sum_probs=258.0

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++ +.++++++++++++ ||+|+++|+|+||||+++++++||.|+|+|++|+.+||||+++++|+++|+++.+++
T Consensus        45 ~~d~~~~-~~~~v~~~~l~~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~  123 (324)
T COG0111          45 DADALIV-SVTPVTEEVLAAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADA  123 (324)
T ss_pred             cCcEEEE-ecCCCCHHHHhhCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHH
Confidence            5899999 89999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc-ccChhhhccCCCEEEE
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-SLGLEDIWPLADYITV  158 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~-~~~l~ell~~aDvV~l  158 (333)
                      ++|+|.|+++.+.|.||.|||+||||+|+||+.+|+++++|||+|++|||+.+.+.....++. ..+|++++++||+|++
T Consensus       124 ~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~l  203 (324)
T COG0111         124 SQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTL  203 (324)
T ss_pred             HHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEE
Confidence            999999999778899999999999999999999999999999999999998877655555554 4579999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEcc
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP  238 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TP  238 (333)
                      |+|+|++|+|||+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++..  +|||++|||++||
T Consensus       204 h~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~--~pL~~~pnV~~TP  281 (324)
T COG0111         204 HLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPAD--SPLWDLPNVILTP  281 (324)
T ss_pred             cCCCCcchhcccCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCC--ChhhcCCCeEECC
Confidence            99999999999999999999999999999999999999999999999999999999999998764  7999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCc
Q psy6348         239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAA  283 (333)
Q Consensus       239 Hi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~  283 (333)
                      |+||+|.|++.+++.++++|+.++..|+    ++.|  |.|.++.
T Consensus       282 Hia~~T~ea~~~~~~~~~~~i~~~l~g~----~~~~--~~~~v~~  320 (324)
T COG0111         282 HIGGSTDEAQERVAEIVAENIVRYLAGG----PVVN--NAPEVDL  320 (324)
T ss_pred             cccccCHHHHHHHHHHHHHHHHHHHcCC----CCCC--Ccccccc
Confidence            9999999999999999999999999987    6656  6665543

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=2.6e-74  Score=585.88  Aligned_cols=303  Identities=53%  Similarity=0.819  Sum_probs=289.6

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus        40 ~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~  119 (525)
T TIGR01327        40 DYDALIVRSATKVTEEVIAAAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADA  119 (525)
T ss_pred             CCCEEEEcCCCCcCHHHHhhCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHH
Confidence            5899999998999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEE
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITV  158 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l  158 (333)
                      .+|+|+|.+..+.|.+|+|||+||||+|+||+.+|++|++|||+|++|||+.+.+.+.+.|+... +++|++++||+|++
T Consensus       120 ~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l  199 (525)
T TIGR01327       120 SLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITV  199 (525)
T ss_pred             HHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEE
Confidence            99999998876778999999999999999999999999999999999999876666677787765 89999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEcc
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP  238 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TP  238 (333)
                      |+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+.+   +|||++|||++||
T Consensus       200 ~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~---~pL~~~~nvi~TP  276 (525)
T TIGR01327       200 HTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTD---NPLFDLDNVIATP  276 (525)
T ss_pred             ccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCC---ChhhcCCCeEECC
Confidence            9999999999999999999999999999999999999999999999999999999999999653   6999999999999


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcccCCCCCchHHHHHHHhHHHHHHhcCC
Q psy6348         239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTS  310 (333)
Q Consensus       239 Hi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  310 (333)
                      |+|++|.|++.+++..+++|+.+|..|+    ++.|.||.|.++.+.+++++||++||++||+++.|+++++
T Consensus       277 Hia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~vn~~~~~~~~~~~~~~~~~la~riG~~a~ql~~~~  344 (525)
T TIGR01327       277 HLGASTREAQENVATQVAEQVLDALKGL----PVPNAVNAPGIDADVMEKLKPYLDLAEKLGKLAGQLLDGA  344 (525)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHHHcCC----CCCceeeCCCCCchhhhhhhhHHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999988887    7899999999999999999999999999999999998764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=3.3e-73  Score=577.89  Aligned_cols=303  Identities=54%  Similarity=0.862  Sum_probs=290.1

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++|+++.+++++++++++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++
T Consensus        42 ~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~  121 (526)
T PRK13581         42 DYDALIVRSATKVTAEVLEAAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHA  121 (526)
T ss_pred             CCCEEEEcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHH
Confidence            5899999988899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH  159 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~  159 (333)
                      .+++|.|.+..+.|.+|.|||+||||+|+||+.+|+++++|||+|++|||+.+.+.....|++..+++|++++||+|++|
T Consensus       122 ~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~  201 (526)
T PRK13581        122 SLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLH  201 (526)
T ss_pred             HHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEc
Confidence            99999998766778999999999999999999999999999999999999876666667788878999999999999999


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH  239 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH  239 (333)
                      +|+|++|+++++++.|++||+|++|||+|||++||++||++||++|+++||+||||++||+++   +|||++|||++|||
T Consensus       202 lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~---~pL~~~~nvilTPH  278 (526)
T PRK13581        202 TPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTD---SPLFELPNVVVTPH  278 (526)
T ss_pred             cCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCC---chhhcCCCeeEcCc
Confidence            999999999999999999999999999999999999999999999999999999999999763   69999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcccCCCCCchHHHHHHHhHHHHHHhcCC
Q psy6348         240 LGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTS  310 (333)
Q Consensus       240 i~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  310 (333)
                      +|++|.|++.++++.+++|+.+|..|+    ++.|.||.|.++.+..++++||+.||+++|+++.|+++++
T Consensus       279 ia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~vn~~~~~~~~~~~~~~~~~la~riG~~a~ql~~~~  345 (526)
T PRK13581        279 LGASTAEAQENVAIQVAEQVIDALRGG----PVPNAVNLPSITAEEAEKLKPYLDLAEKLGSLAAQLADGP  345 (526)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHcCC----CcCceeeCCCCchhhhHHhHHHHHHHHHHHHHHHHHcCCC
Confidence            999999999999999999999998887    7899999999999999999999999999999999998764

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.3e-70  Score=527.89  Aligned_cols=271  Identities=28%  Similarity=0.463  Sum_probs=253.4

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++|+++ .++++++++++| ||+|++.|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++
T Consensus        45 ~ad~li~~~-~~~~~~~l~~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~  123 (323)
T PRK15409         45 EAEGLLGSG-EKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAE  123 (323)
T ss_pred             CCeEEEEcC-CCCCHHHHhhCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHH
Confidence            579988764 589999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCccccc---CCCccccCCCEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCE
Q psy6348          80 SLKEGKWDRK---LYTGTELYGKTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADY  155 (333)
Q Consensus        80 ~~~~g~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDv  155 (333)
                      .+++|+|.+.   .+.|.+|+|||+||||+|+||+.+|++++ +|||+|++|||+...+.....++++.++++++++||+
T Consensus       124 ~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDv  203 (323)
T PRK15409        124 RVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDF  203 (323)
T ss_pred             HHHcCCCcccCccccccCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCE
Confidence            9999999743   23588999999999999999999999998 9999999999986555455667777899999999999


Q ss_pred             EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEE
Q psy6348         156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI  235 (333)
Q Consensus       156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi  235 (333)
                      |++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.+  +||+++|||+
T Consensus       204 v~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~--~pL~~~~nvi  281 (323)
T PRK15409        204 VCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVD--SPLLSLPNVV  281 (323)
T ss_pred             EEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCC--chhhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999997543  6999999999


Q ss_pred             EccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       236 ~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                      +|||+|++|.|++.+++..+++||.+|..|+    ++.+.||.
T Consensus       282 lTPHia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~vn~  320 (323)
T PRK15409        282 AVPHIGSATHETRYNMAACAVDNLIDALQGK----VEKNCVNP  320 (323)
T ss_pred             EcCcCCCCcHHHHHHHHHHHHHHHHHHHcCC----CCCcccCc
Confidence            9999999999999999999999999998887    78899985

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=1.8e-69  Score=518.82  Aligned_cols=272  Identities=38%  Similarity=0.613  Sum_probs=255.0

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++...+++++++++++| ||+|+..|+||||||+++|+++||.|+|+|++++.+||||+++|||++.|+++++++
T Consensus        44 ~~~~i~~~~~~~i~~~~l~~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~  123 (324)
T COG1052          44 DADAVITFVNDRIDAEVLEKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDR  123 (324)
T ss_pred             CCcEEEEcCCCCcCHHHHHhCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHH
Confidence            5799999878899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccC----CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCE
Q psy6348          80 SLKEGKWDRKL----YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADY  155 (333)
Q Consensus        80 ~~~~g~w~~~~----~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDv  155 (333)
                      .+|+|.|....    ..|.+++|||+||||+|+||+++|+++++|||+|++|||+..++..+..+.++.+++|++++||+
T Consensus       124 ~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDi  203 (324)
T COG1052         124 RVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDI  203 (324)
T ss_pred             HHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCE
Confidence            99999998764    56889999999999999999999999999999999999988755556667888899999999999


Q ss_pred             EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc--
Q psy6348         156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK--  233 (333)
Q Consensus       156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn--  233 (333)
                      |++|||+|++|+|+|+++.|++||+|++|||+|||++||++||++||++|+|+||++|||+.||...+  +||++++|  
T Consensus       204 i~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d--~~l~~l~~~~  281 (324)
T COG1052         204 ISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFD--HPLLRLDNFP  281 (324)
T ss_pred             EEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCC--hhHhhccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999997532  57776666  


Q ss_pred             -EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         234 -VIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       234 -vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                       |++|||+|+.|.|++.+|+..+++|+.++.+|+    .+.+.||.
T Consensus       282 ~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~----~~~~~v~~  323 (324)
T COG1052         282 NVVLTPHIASATEEARKAMAELALENLEAFFDGG----VPPNEVNP  323 (324)
T ss_pred             CEEEccccccccHHHHHHHHHHHHHHHHHHHcCC----CCCCCCCC
Confidence             999999999999999999999999999988877    67788774

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.8e-68  Score=526.43  Aligned_cols=285  Identities=34%  Similarity=0.516  Sum_probs=260.6

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus        53 ~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~  132 (409)
T PRK11790         53 DAHFIGIRSRTQLTEEVLAAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNA  132 (409)
T ss_pred             CCCEEEEeCCCCCCHHHHhhCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHH
Confidence            5799999988899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEE
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITV  158 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l  158 (333)
                      .+++|.|.+..+.|.+|.|||+||||+|+||+.+|+++++|||+|++|||+....   ..++... +++|++++||+|++
T Consensus       133 ~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~---~~~~~~~~~l~ell~~sDiVsl  209 (409)
T PRK11790        133 KAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP---LGNARQVGSLEELLAQSDVVSL  209 (409)
T ss_pred             HHHcCcccccccCcccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc---cCCceecCCHHHHHhhCCEEEE
Confidence            9999999876667899999999999999999999999999999999999864221   1234443 89999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC--ccchhhcCCCcEEE
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS--EQTFELIKHPKVIV  236 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~--~~~~~L~~~pnvi~  236 (333)
                      |+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++.  +..+||+++|||++
T Consensus       210 h~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvil  289 (409)
T PRK11790        210 HVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVIL  289 (409)
T ss_pred             cCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999653  22469999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcc---------cCCCCCch
Q psy6348         237 TPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAAS---------RNPENTSW  292 (333)
Q Consensus       237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~---------~~~~~~~~  292 (333)
                      |||+|++|.|++.++++.+++|+.+|..|+    .+.+.||.|.+...         ..++.+|.
T Consensus       290 TPHia~~t~ea~~~~~~~~~~nl~~~~~~~----~~~~~vn~~~~~~~~~~~~~rlii~h~d~pG  350 (409)
T PRK11790        290 TPHIGGSTQEAQENIGLEVAGKLVKYSDNG----STLSAVNFPEVSLPEHPGGHRLLHIHENRPG  350 (409)
T ss_pred             CCcCCCCHHHHHHHHHHHHHHHHHHHHcCC----CcCcceeccccccCCCCCCceEEEEeCCCCC
Confidence            999999999999999999999999988877    79999998865543         23467777

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=5.6e-68  Score=512.01  Aligned_cols=274  Identities=34%  Similarity=0.574  Sum_probs=256.2

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++|+++.+++++++++++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus        45 ~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~  124 (333)
T PRK13243         45 DVDALVTMLSERIDCEVFEAAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADH  124 (333)
T ss_pred             CCcEEEEeCCCCCCHHHHhhCCCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5799999877799999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCccccc-------CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccC
Q psy6348          80 SLKEGKWDRK-------LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPL  152 (333)
Q Consensus        80 ~~~~g~w~~~-------~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~  152 (333)
                      .+++|.|.+.       .+.|.+|.||||||||+|+||+.+|++|++|||+|++|||+.........++...++++++++
T Consensus       125 ~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~  204 (333)
T PRK13243        125 FVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRE  204 (333)
T ss_pred             HHHcCCCCccccccccccccccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhh
Confidence            9999999742       125789999999999999999999999999999999999987554445567777799999999


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP  232 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~p  232 (333)
                      ||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+++   +|||++|
T Consensus       205 aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~---~pL~~~~  281 (333)
T PRK13243        205 SDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYN---EELFSLK  281 (333)
T ss_pred             CCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCC---chhhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999763   6999999


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccccc
Q psy6348         233 KVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPAL  281 (333)
Q Consensus       233 nvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~  281 (333)
                      ||++|||+|++|.|++.++...+++|+.+|..|+    ++.|.||...+
T Consensus       282 nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~v~~~~~  326 (333)
T PRK13243        282 NVVLAPHIGSATFEAREGMAELVAENLIAFKRGE----VPPTLVNREVV  326 (333)
T ss_pred             CEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCC----CCCcccCHHHH
Confidence            9999999999999999999999999999998887    78899997653

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=6.3e-68  Score=507.27  Aligned_cols=259  Identities=29%  Similarity=0.435  Sum_probs=239.8

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|+++++ .+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus        42 ~~d~ii~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~  120 (311)
T PRK08410         42 DANIIITN-KVVIDKEVLSQLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDR  120 (311)
T ss_pred             CCCEEEEC-CCCCCHHHHhhCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHH
Confidence            57888876 5789999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCC------CccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCC
Q psy6348          80 SLKEGKWDRKLY------TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA  153 (333)
Q Consensus        80 ~~~~g~w~~~~~------~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~a  153 (333)
                      .+|+|.|.+...      .+.+|+|||+||||+|+||+.+|+++++|||+|++|||+....   ..++++.++++++++|
T Consensus       121 ~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~~---~~~~~~~~l~ell~~s  197 (311)
T PRK08410        121 YVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKNK---NEEYERVSLEELLKTS  197 (311)
T ss_pred             HHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCcccc---ccCceeecHHHHhhcC
Confidence            999999975321      2579999999999999999999999999999999999975321   2356677999999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCC--
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH--  231 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~--  231 (333)
                      |+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+ |+||||++||++..  +||+.+  
T Consensus       198 Dvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~--~pL~~~~~  274 (311)
T PRK08410        198 DIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKN--HPLLSIKN  274 (311)
T ss_pred             CEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCC--ChhhccCC
Confidence            9999999999999999999999999999999999999999999999999999999 99999999997643  688886  


Q ss_pred             -CcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         232 -PKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       232 -pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                       |||++|||+|++|.|++.++...+++|+.+|.+|+
T Consensus       275 ~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~  310 (311)
T PRK08410        275 KEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG  310 (311)
T ss_pred             CCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence             89999999999999999999999999999988774

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=9.5e-68  Score=507.25  Aligned_cols=264  Identities=36%  Similarity=0.518  Sum_probs=242.5

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|+++++ .+++++++++++| ||+|++.|+|+||||+++|.++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus        45 ~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~  123 (317)
T PRK06487         45 GAQVAISN-KVALDAAALAAAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQ  123 (317)
T ss_pred             CCeEEEEe-CCCCCHHHHhhCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHH
Confidence            57888765 4689999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccC------CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCC
Q psy6348          80 SLKEGKWDRKL------YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA  153 (333)
Q Consensus        80 ~~~~g~w~~~~------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~a  153 (333)
                      .+++|.|.+..      +.+.+|+|||+||||+|+||+.+|+++++|||+|++||++....     ....+++++++++|
T Consensus       124 ~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~~~l~ell~~s  198 (317)
T PRK06487        124 AVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPA-----RPDRLPLDELLPQV  198 (317)
T ss_pred             HHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCcc-----cccccCHHHHHHhC
Confidence            99999997542      23579999999999999999999999999999999999864321     23456899999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcC--C
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIK--H  231 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~--~  231 (333)
                      |+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||++||++.+  +|||.  +
T Consensus       199 Div~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~--~pl~~~~~  276 (317)
T PRK06487        199 DALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNG--NPLLAPDI  276 (317)
T ss_pred             CEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCC--CchhhcCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997643  68995  8


Q ss_pred             CcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         232 PKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       232 pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                      |||++|||+|++|.|++.+++..+++||.+|..|+     +.+.||
T Consensus       277 pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~-----~~~~v~  317 (317)
T PRK06487        277 PRLIVTPHSAWGSREARQRIVGQLAENARAFFAGK-----PLRVVS  317 (317)
T ss_pred             CCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC-----CCcCCC
Confidence            99999999999999999999999999999999886     445554

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=2.3e-66  Score=508.19  Aligned_cols=272  Identities=29%  Similarity=0.372  Sum_probs=248.6

Q ss_pred             CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|+++++..+++++++|++++   ||+|++.|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+
T Consensus        62 ~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~  141 (386)
T PLN02306         62 KCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (386)
T ss_pred             CCcEEEEcCCCCcCHHHHHhCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHH
Confidence            4799999887899999999987   5999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCccccc---CCCccccCCCEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCCCHHHH---HhcC----------
Q psy6348          78 CQSLKEGKWDRK---LYTGTELYGKTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMVSVEDA---AKLN----------  140 (333)
Q Consensus        78 ~~~~~~g~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~~~a---~~~g----------  140 (333)
                      ++.+++|.|.+.   .+.|.+|.|||+||||+|+||+.+|++++ +|||+|++|||+...+..   ...+          
T Consensus       142 ~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~  221 (386)
T PLN02306        142 DEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQP  221 (386)
T ss_pred             HHHHHcCCCccccccccCCcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhccccccccccc
Confidence            999999988532   23578999999999999999999999985 999999999998643221   1122          


Q ss_pred             --ccc-cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         141 --IAS-LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       141 --v~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                        ++. .+++|++++||+|++|+|+|++|++||+++.|++||+|++|||+|||++||++||++||++|+++||+||||++
T Consensus       222 ~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~  301 (386)
T PLN02306        222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFED  301 (386)
T ss_pred             ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCC
Confidence              222 48999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccc
Q psy6348         218 EPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP  279 (333)
Q Consensus       218 EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~  279 (333)
                      ||+++   +||+++|||++|||+|++|.++++++...+++|+.++.+|+    ++.|.||++
T Consensus       302 EP~~~---~~L~~~pNVilTPHiag~T~e~~~~~~~~~~~ni~~~~~g~----~~~~~~~~~  356 (386)
T PLN02306        302 EPYMK---PGLADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGY----PVWGDPNRV  356 (386)
T ss_pred             CCCCc---chHhhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcCC----CCcccccch
Confidence            99754   58999999999999999999999999999999999998888    899999943

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-66  Score=496.32  Aligned_cols=259  Identities=32%  Similarity=0.462  Sum_probs=237.0

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++ +.+++++++++++| ||+|++.|+|+||||+++|.++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus        44 ~~d~ii~-~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~  122 (314)
T PRK06932         44 DADIVIT-SKVLFTRETLAQLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYR  122 (314)
T ss_pred             CCcEEEE-eCCCCCHHHHhhCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHH
Confidence            5788766 46789999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccC------CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCC
Q psy6348          80 SLKEGKWDRKL------YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA  153 (333)
Q Consensus        80 ~~~~g~w~~~~------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~a  153 (333)
                      .+++|.|.+..      +.+.+|+|||+||||+|+||+.+|+++++|||+|++||+.....    ....+.++++++++|
T Consensus       123 ~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~~~~~~l~ell~~s  198 (314)
T PRK06932        123 DQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CREGYTPFEEVLKQA  198 (314)
T ss_pred             HHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cccccCCHHHHHHhC
Confidence            99999997531      23579999999999999999999999999999999999864211    122356899999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhc----
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELI----  229 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~----  229 (333)
                      |+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.+  +|||    
T Consensus       199 Div~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~--~pl~~~~~  276 (314)
T PRK06932        199 DIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKD--NPLIQAAK  276 (314)
T ss_pred             CEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCC--ChhhHhhc
Confidence            9999999999999999999999999999999999999999999999999999999999999999996543  5777    


Q ss_pred             CCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         230 KHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       230 ~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      ++|||++|||+|++|.|+++++...+++||.+|..|+
T Consensus       277 ~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g  313 (314)
T PRK06932        277 RLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQG  313 (314)
T ss_pred             CCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcC
Confidence            5999999999999999999999999999999977664

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-65  Score=501.19  Aligned_cols=273  Identities=30%  Similarity=0.464  Sum_probs=250.0

Q ss_pred             CceEEEEeC--CCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRS--DTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s--~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++|+..  .+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|++.++
T Consensus        97 dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~  176 (386)
T PLN03139         97 DLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPG  176 (386)
T ss_pred             CCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHH
Confidence            579988864  2579999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCccccc--CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-ChhhhccCC
Q psy6348          78 CQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIWPLA  153 (333)
Q Consensus        78 ~~~~~~g~w~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell~~a  153 (333)
                      ++.+++|.|...  ...+.+|.||||||||+|+||+.+|++|++|||+|++||++. ..+...+.|+... ++++++++|
T Consensus       177 ~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~s  256 (386)
T PLN03139        177 YHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKC  256 (386)
T ss_pred             HHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhC
Confidence            999999999753  235789999999999999999999999999999999999975 3444456677665 899999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK  233 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn  233 (333)
                      |+|++|+|++++|+++|+++.|+.||+|++|||++||++||+++|++||++|+|+||++|||++||++.+  +|||.+||
T Consensus       257 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d--~pL~~~pN  334 (386)
T PLN03139        257 DVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKD--HPWRYMPN  334 (386)
T ss_pred             CEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCC--ChhhcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997643  79999999


Q ss_pred             EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         234 VIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       234 vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                      |++|||+||.|.+++.+++..+++|+.+|..|++.  ++.+.+.
T Consensus       335 vilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~--~~~~~i~  376 (386)
T PLN03139        335 HAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF--PAQNYIV  376 (386)
T ss_pred             eEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC--CCcceee
Confidence            99999999999999999999999999999888743  3444443

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-65  Score=499.66  Aligned_cols=264  Identities=31%  Similarity=0.478  Sum_probs=246.2

Q ss_pred             CceEEEEeC--CCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRS--DTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s--~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++|+++  .+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++||++.|++..+
T Consensus        90 dadili~~~~~~~~~~~e~l~~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~  169 (385)
T PRK07574         90 DADVVISQPFWPAYLTAERIAKAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPS  169 (385)
T ss_pred             CCeEEEEecCCCCCCCHHHHhhCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHH
Confidence            579998864  3689999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCcccccC--CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-cChhhhccCC
Q psy6348          78 CQSLKEGKWDRKL--YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-LGLEDIWPLA  153 (333)
Q Consensus        78 ~~~~~~g~w~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~~l~ell~~a  153 (333)
                      ++.+++|.|.+..  ..+.+|+||||||||+|+||+.+|++|++|||+|++|||+. ..+.....|++. .+++|++++|
T Consensus       170 ~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a  249 (385)
T PRK07574        170 HRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVC  249 (385)
T ss_pred             HHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcC
Confidence            9999999998643  24789999999999999999999999999999999999986 334445567764 5899999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK  233 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn  233 (333)
                      |+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|+++|++||++|+|+||++|||++||++.+  +|||++||
T Consensus       250 DvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d--~pL~~~pN  327 (385)
T PRK07574        250 DVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPAD--HPWRTMPR  327 (385)
T ss_pred             CEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCC--ChHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999997643  79999999


Q ss_pred             EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         234 VIVTPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       234 vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      |++|||+|++|.|++.+++..+++||.+|..|+
T Consensus       328 vilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~  360 (385)
T PRK07574        328 NGMTPHISGTTLSAQARYAAGTREILECFFEGR  360 (385)
T ss_pred             eEECCccccCcHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999998887

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=1.3e-63  Score=483.89  Aligned_cols=261  Identities=30%  Similarity=0.477  Sum_probs=239.6

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCC---CchHHHHHHHHHHHHHhcCCCc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGG---NFISACELTCSLISALSRNVPQ   76 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~---n~~avAE~~l~l~l~~~R~i~~   76 (333)
                      ++|+++++ ..++++++|+.+| ||+|++.|+|+|+||+++|.++||.|+|+|++   |+.+||||+++++|+++|+++.
T Consensus        61 ~~d~~i~~-~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~  139 (347)
T PLN02928         61 NYDICVPK-MMRLDADIIARASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNE  139 (347)
T ss_pred             CCcEEEEC-CCCCCHHHHhcCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHH
Confidence            57888776 4589999999999 99999999999999999999999999999974   8899999999999999999999


Q ss_pred             cchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHh-------------cCccc
Q psy6348          77 GCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK-------------LNIAS  143 (333)
Q Consensus        77 ~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-------------~gv~~  143 (333)
                      +++.+++|.|.+  ..+.+|+|||+||||+|+||+.+|++|++|||+|++|||+...+....             .+...
T Consensus       140 ~~~~~~~~~w~~--~~~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (347)
T PLN02928        140 MQISLKARRLGE--PIGDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGH  217 (347)
T ss_pred             HHHHHHcCCccc--ccccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcc
Confidence            999999999965  357899999999999999999999999999999999999753322211             11245


Q ss_pred             cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCc
Q psy6348         144 LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSE  223 (333)
Q Consensus       144 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~  223 (333)
                      .++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||++.+
T Consensus       218 ~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~  297 (347)
T PLN02928        218 EDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPD  297 (347)
T ss_pred             cCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999996543


Q ss_pred             cchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         224 QTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       224 ~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                        +|||++|||++|||+|++|.+++.+++..+++|+.+|..|+
T Consensus       298 --~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~nl~~~~~g~  338 (347)
T PLN02928        298 --DPILKHPNVIITPHVAGVTEYSYRSMGKIVGDAALQLHAGR  338 (347)
T ss_pred             --ChhhcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHCCC
Confidence              69999999999999999999999999999999999999887

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=2.2e-62  Score=472.29  Aligned_cols=270  Identities=23%  Similarity=0.376  Sum_probs=244.2

Q ss_pred             CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++++.+.+++++++++++|   ||+|++.|+|+||||+++|+++||.|+|+|++|+.+||||++++||++.|+++.+
T Consensus        45 ~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~  124 (330)
T PRK12480         45 DYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDI  124 (330)
T ss_pred             CCCEEEEecCCCCCHHHHHhhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHH
Confidence            5899999877799999999984   9999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCccccc-CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCE
Q psy6348          78 CQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADY  155 (333)
Q Consensus        78 ~~~~~~g~w~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDv  155 (333)
                      ++.+++|.|... ...+.+|+|++|||||+|+||+.+|++|++|||+|++||++.....  . .... .++++++++||+
T Consensus       125 ~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~--~-~~~~~~~l~ell~~aDi  201 (330)
T PRK12480        125 ERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDL--D-FLTYKDSVKEAIKDADI  201 (330)
T ss_pred             HHHHHhCCcccccccCccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhh--h-hhhccCCHHHHHhcCCE
Confidence            999999976432 2457899999999999999999999999999999999999763321  1 1223 379999999999


Q ss_pred             EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC-----------Ccc
Q psy6348         156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK-----------SEQ  224 (333)
Q Consensus       156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-----------~~~  224 (333)
                      |++|+|++++|+++++++.|++||+|++|||+|||.+||+++|++||++|+++||+||||++||+.           ++.
T Consensus       202 Vil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~  281 (330)
T PRK12480        202 ISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKT  281 (330)
T ss_pred             EEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchh
Confidence            999999999999999999999999999999999999999999999999999999999999999952           122


Q ss_pred             chhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         225 TFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       225 ~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                      .+||+++|||++|||+|++|.+++.++.+.+++|+.++..|+    ...+.||
T Consensus       282 ~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~~~~~~~----~~~~~~~  330 (330)
T PRK12480        282 LLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAALSVINTG----TCETRLN  330 (330)
T ss_pred             hHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHhCC----CCcccCC
Confidence            358999999999999999999999999999999999987777    5666665

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=1.2e-61  Score=467.82  Aligned_cols=271  Identities=28%  Similarity=0.414  Sum_probs=245.8

Q ss_pred             CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++++++.+++++++|+++|   ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+
T Consensus        45 ~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~  124 (332)
T PRK08605         45 GFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQI  124 (332)
T ss_pred             CCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHH
Confidence            5799999998999999999988   8999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCccccc-CCCccccCCCEEEEEecChHHHHHHHHH-hhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCC
Q psy6348          78 CQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRM-QAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLAD  154 (333)
Q Consensus        78 ~~~~~~g~w~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aD  154 (333)
                      ++.+++|.|... ...|++|.|+||||||+|+||+.+|++| ++|||+|++||++.....  ..++... ++++++++||
T Consensus       125 ~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aD  202 (332)
T PRK08605        125 QTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGAD  202 (332)
T ss_pred             HHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCC
Confidence            999999987532 2457899999999999999999999999 789999999999764332  2234444 8999999999


Q ss_pred             EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC---C--------c
Q psy6348         155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK---S--------E  223 (333)
Q Consensus       155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~---~--------~  223 (333)
                      +|++|+|+++.|+++++++.++.||+|++|||++||.++|+++|.++|++|+|+||+||||++||+.   +        +
T Consensus       203 vIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~  282 (332)
T PRK08605        203 IVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDP  282 (332)
T ss_pred             EEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccch
Confidence            9999999999999999999999999999999999999999999999999999999999999999842   1        1


Q ss_pred             cchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         224 QTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       224 ~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                      ...+|+.+|||++|||+|++|.|++.++...+++|+.+|.+|+    +..+.||
T Consensus       283 ~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~~~~~g~----~~~~~~~  332 (332)
T PRK08605        283 LLESLINREDVILTPHIAFYTDAAVKNLIVDALDATLEVLQTG----TTRLRVN  332 (332)
T ss_pred             hhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHHHHHcCC----CCCCCcC
Confidence            1126999999999999999999999999999999999988887    6777776

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=7.3e-59  Score=452.96  Aligned_cols=239  Identities=31%  Similarity=0.476  Sum_probs=219.7

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++|+.|++++++++ ++ ||+|+++++|+||||+++++++||.|+|+||+|+.+||||++++||+++|+      
T Consensus        37 daD~liv~s~t~v~~~ll~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------  109 (378)
T PRK15438         37 DADALMVRSVTKVNESLLA-GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------  109 (378)
T ss_pred             CCcEEEEcCCCCCCHHHhc-CCCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------
Confidence            6899999999999999997 46 999999999999999999999999999999999999999999999999996      


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH  159 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~  159 (333)
                                  .|.+|.||||||||+|+||+.+|++|++|||+|++|||.....   .....+.++++++++||+|++|
T Consensus       110 ------------~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh  174 (378)
T PRK15438        110 ------------DGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFH  174 (378)
T ss_pred             ------------CCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEe
Confidence                        1458999999999999999999999999999999999854321   1123456899999999999999


Q ss_pred             cCCchh----hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEE
Q psy6348         160 TPLIPQ----TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI  235 (333)
Q Consensus       160 ~P~t~~----t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi  235 (333)
                      +|+|++    |++|++++.|+.||+|++|||+|||++||++||+++|++|++.||+||||++||+.+   ++|+..++ +
T Consensus       175 ~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~---~~Ll~~~~-i  250 (378)
T PRK15438        175 TPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELN---VELLKKVD-I  250 (378)
T ss_pred             CCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCc---hhhhhcCC-E
Confidence            999996    999999999999999999999999999999999999999999999999999999654   47877665 9


Q ss_pred             EccCCCCCcHHHHHHHHHHHHHHHHHhHcC
Q psy6348         236 VTPHLGASTKEAQIRVAVEIAEQFIALANT  265 (333)
Q Consensus       236 ~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~  265 (333)
                      +|||+||+|.|++.++..++++|+.++.+.
T Consensus       251 ~TPHiAg~s~e~~~~~~~~~~~~l~~~~~~  280 (378)
T PRK15438        251 GTPHIAGYTLEGKARGTTQVFEAYSKFIGH  280 (378)
T ss_pred             ECCccCcCcHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999998854

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=3.8e-59  Score=446.56  Aligned_cols=264  Identities=25%  Similarity=0.326  Sum_probs=231.7

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhh-----HhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcC
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTA-----ATRKGVLVLNAPG-GNFISACELTCSLISALSRN   73 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~a-----a~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~   73 (333)
                      ++|+++++..   +.++++. + ||+|++.|+|+|++|.+.     +..+||.|+|+++ +++.+||||++++||+++|+
T Consensus        38 ~a~~~~~~~~---~~~~l~~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~  113 (312)
T PRK15469         38 PADYALVWHP---PVEMLAG-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRR  113 (312)
T ss_pred             cCeEEEEeCC---ChHHhcc-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcC
Confidence            4788888653   4677864 6 999999999999998322     3458999999974 68999999999999999999


Q ss_pred             CCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH-HHhcCccccChhhhccC
Q psy6348          74 VPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED-AAKLNIASLGLEDIWPL  152 (333)
Q Consensus        74 i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~gv~~~~l~ell~~  152 (333)
                      ++++.+.+++|.|.+  ..+.++.|||+||||+|.||+.+|++|++|||+|++||++..... .... ....++++++++
T Consensus       114 ~~~~~~~~~~~~w~~--~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~-~~~~~l~e~l~~  190 (312)
T PRK15469        114 FDDYQALQNSSHWQP--LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSF-AGREELSAFLSQ  190 (312)
T ss_pred             hHHHHHHHHhCCcCC--CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceee-cccccHHHHHhc
Confidence            999999999999975  245789999999999999999999999999999999998653211 1111 123489999999


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP  232 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~p  232 (333)
                      ||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||+++|++||++|+++||+||||++||++.+  +|||++|
T Consensus       191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~--~pl~~~~  268 (312)
T PRK15469        191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPE--SPLWQHP  268 (312)
T ss_pred             CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCC--ChhhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999997643  7999999


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccc
Q psy6348         233 KVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP  279 (333)
Q Consensus       233 nvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~  279 (333)
                      ||++|||+|++|.++  ++...+++|+.+|..|+    ++.|.||+.
T Consensus       269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~----~~~~~V~~~  309 (312)
T PRK15469        269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGE----RVCGQVDRA  309 (312)
T ss_pred             CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCC----CCcccCCcc
Confidence            999999999999885  57889999999999998    789999854

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=2.7e-58  Score=449.99  Aligned_cols=241  Identities=29%  Similarity=0.434  Sum_probs=222.4

Q ss_pred             CceEEEEeCCCCCCHHHhcccCcceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchh
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS   80 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~   80 (333)
                      ++|++|+++.+++++++++..+||+|+++++|+||||++++.++||.|+|+||+|+.+||||++++||+++|+       
T Consensus        37 daD~liv~~~t~v~~~ll~~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~-------  109 (381)
T PRK00257         37 DADVLLVRSVTRVDRALLEGSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER-------  109 (381)
T ss_pred             CceEEEEeCCCCCCHHHhcCCCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc-------
Confidence            6899999999999999998533999999999999999999999999999999999999999999999999885       


Q ss_pred             hhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEec
Q psy6348          81 LKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHT  160 (333)
Q Consensus        81 ~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~  160 (333)
                                 .|.++.||||||||+|+||+.+|+++++|||+|++|||.....   ..+..+.++++++++||+|++|+
T Consensus       110 -----------~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~~---~~~~~~~~l~ell~~aDiV~lh~  175 (381)
T PRK00257        110 -----------EGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQEA---EGDGDFVSLERILEECDVISLHT  175 (381)
T ss_pred             -----------cCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECCccccc---ccCccccCHHHHHhhCCEEEEeC
Confidence                       2468999999999999999999999999999999999854321   12345568999999999999999


Q ss_pred             CCch----hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEE
Q psy6348         161 PLIP----QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV  236 (333)
Q Consensus       161 P~t~----~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~  236 (333)
                      |+|+    .|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||+||||++||+.+   +||+.. |+++
T Consensus       176 Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~---~~L~~~-nvi~  251 (381)
T PRK00257        176 PLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQID---LELADL-CTIA  251 (381)
T ss_pred             cCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCC---hhhhhC-CEEE
Confidence            9999    5999999999999999999999999999999999999999999999999999999654   578875 9999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         237 TPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      |||+||+|.|+..++..++++|+.+|.++.
T Consensus       252 TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~  281 (381)
T PRK00257        252 TPHIAGYSLDGKARGTAQIYQALCRFFGIP  281 (381)
T ss_pred             cCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999998886

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=2.9e-58  Score=438.50  Aligned_cols=244  Identities=27%  Similarity=0.447  Sum_probs=221.4

Q ss_pred             ccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCC
Q psy6348          20 ASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYG   98 (333)
Q Consensus        20 ~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~g   98 (333)
                      .++ ||+|++.|+|+||||+++|.++||.+.| +|+|+.+||||++++||+++|+++++++.+++|.|.+.  .+.+|+|
T Consensus        46 ~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~-~g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~g  122 (303)
T PRK06436         46 PGKKTKMIQSLSAGVDHIDVSGIPENVVLCSN-AGAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYN  122 (303)
T ss_pred             CCCCeEEEEECCcccCcccHHHHHhCCeEEEc-CCCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCC
Confidence            346 9999999999999999999998887777 58899999999999999999999999999999999863  4689999


Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc--ccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA--SLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      ||+||||+|+||+++|+++++|||+|++|||+....     ++.  ..++++++++||+|++|+|+|++|+++|+++.|+
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~~-----~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~  197 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVND-----GISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLS  197 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCccc-----CcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHh
Confidence            999999999999999999999999999999975321     221  4589999999999999999999999999999999


Q ss_pred             ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC-CCcHHHHHHHHHHH
Q psy6348         177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG-ASTKEAQIRVAVEI  255 (333)
Q Consensus       177 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~-~~t~ea~~~~~~~~  255 (333)
                      .||+|++|||+|||+++|+++|+++|++|++.||+||||++||++.+  +   .+|||++|||++ ++|.|++.++...+
T Consensus       198 ~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~--~---~~~nviiTPHi~g~~t~e~~~~~~~~~  272 (303)
T PRK06436        198 LFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE--T---NPDNVILSPHVAGGMSGEIMQPAVALA  272 (303)
T ss_pred             cCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCcc--C---CCCCEEECCccccccCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999997543  2   689999999986 58999999999999


Q ss_pred             HHHHHHhHcCCCCCCCCCCccccccc
Q psy6348         256 AEQFIALANTNPQYTSIQGVLNAPAL  281 (333)
Q Consensus       256 ~~~i~~~~~~~~~~~~~~~~vn~~~~  281 (333)
                      ++|+.+|..|+     +.|.||...+
T Consensus       273 ~~ni~~~~~g~-----~~~~V~~~~y  293 (303)
T PRK06436        273 FENIKNFFEGK-----PKNIVRKEEY  293 (303)
T ss_pred             HHHHHHHHcCC-----CCceEchHHh
Confidence            99999998886     4688887643

>KOG0069|consensus

Probab=100.00  E-value=3.9e-58  Score=437.53  Aligned_cols=254  Identities=34%  Similarity=0.572  Sum_probs=235.9

Q ss_pred             CCCCHHHhccc-C-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccc
Q psy6348          11 TKVTAEVLQAS-N-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDR   88 (333)
Q Consensus        11 ~~v~~~~l~~~-~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~   88 (333)
                      ...+.+++.+. | ||+|..+|+|+||||+++|++|||.|+|+|+.++.+|||++++++|.+.|++..+++.+++|+|..
T Consensus        71 ~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w~~  150 (336)
T KOG0069|consen   71 GAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGWGW  150 (336)
T ss_pred             hHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCccc
Confidence            34667777775 6 999999999999999999999999999999999999999999999999999999999999999932


Q ss_pred             --cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchh
Q psy6348          89 --KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        89 --~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~  165 (333)
                        ....|..+.||||||+|+|+||+.+|+||++||+.+.+++++. ..+.+.+.+.+..++++++++||+|++|||+|++
T Consensus       151 ~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~  230 (336)
T KOG0069|consen  151 AGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKE  230 (336)
T ss_pred             cCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHH
Confidence              2345788999999999999999999999999998888888876 4667777777788999999999999999999999


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcH
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTK  245 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~  245 (333)
                      |+++|+++.|+.||+|++|||++||+++|++++++||++|++.||+||||++||+.+   +||+.++||++|||+|++|.
T Consensus       231 T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~---~~l~~~dnvv~~PHigs~t~  307 (336)
T KOG0069|consen  231 TRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEPPVD---HPLLTLDNVVILPHIGSATL  307 (336)
T ss_pred             HHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCCCCC---cchhcccceeEecccccCcH
Confidence            999999999999999999999999999999999999999999999999999999554   68999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHcCCC
Q psy6348         246 EAQIRVAVEIAEQFIALANTNP  267 (333)
Q Consensus       246 ea~~~~~~~~~~~i~~~~~~~~  267 (333)
                      +++.+|+..++.|+.++..|++
T Consensus       308 ~t~~~m~~~v~~n~~~~~~g~~  329 (336)
T KOG0069|consen  308 ETREKMAEIVLNNLLAFFSGKP  329 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHccCC
Confidence            9999999999999999887773

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=2.2e-49  Score=350.68  Aligned_cols=176  Identities=46%  Similarity=0.793  Sum_probs=158.3

Q ss_pred             HHHHHHHhcCCCccchhhhcCcc-cccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH-HHhcCc
Q psy6348          64 CSLISALSRNVPQGCQSLKEGKW-DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED-AAKLNI  141 (333)
Q Consensus        64 l~l~l~~~R~i~~~~~~~~~g~w-~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~gv  141 (333)
                      +++||++.|+++.+++.+++|.| .+....+.+++|+||||||+|+||+.+|+++++|||+|++|||+..... ....++
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~   80 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV   80 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence            68999999999999999999999 4445678999999999999999999999999999999999999986554 567788


Q ss_pred             cccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC
Q psy6348         142 ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK  221 (333)
Q Consensus       142 ~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~  221 (333)
                      ...+++|++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+++||+||||++||++
T Consensus        81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~  160 (178)
T PF02826_consen   81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP  160 (178)
T ss_dssp             EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred             eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999976


Q ss_pred             CccchhhcCCCcEEEccCCC
Q psy6348         222 SEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       222 ~~~~~~L~~~pnvi~TPHi~  241 (333)
                      ..  +||+++|||++|||+|
T Consensus       161 ~~--~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  161 AD--SPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TT--HHHHTSTTEEEESS-T
T ss_pred             CC--ChHHcCCCEEEeCccC
Confidence            43  7999999999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067|consensus

Probab=100.00  E-value=2.6e-35  Score=279.22  Aligned_cols=262  Identities=32%  Similarity=0.477  Sum_probs=236.6

Q ss_pred             CCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCccccc
Q psy6348          11 TKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRK   89 (333)
Q Consensus        11 ~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~   89 (333)
                      ..++++-+++.+ ||+|.+.|.|+||+|+.+|.+.||.|||.|+...+.+|.-++.++|.++|+.....+.+++|.|...
T Consensus        83 i~l~reDlEkfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~  162 (435)
T KOG0067|consen   83 ITLPREDLEKFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQG  162 (435)
T ss_pred             cccchhhHHHhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeec
Confidence            568899999999 9999999999999999999999999999999999999999999999999999999999999998643


Q ss_pred             C-------CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecC
Q psy6348          90 L-------YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTP  161 (333)
Q Consensus        90 ~-------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P  161 (333)
                      .       .....+.|.++|++|+|++|+.++.++++||..|+.|||+.....-+.+|.+.+ ++++++.++|.+++|+.
T Consensus       163 ~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~  242 (435)
T KOG0067|consen  163 LEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCN  242 (435)
T ss_pred             hhhhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhhhhcccceecccchhhhhccceeeecc
Confidence            2       123467899999999999999999999999999999999987666677888765 89999999999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~  241 (333)
                      +++++.++|+.-..++|++|++++|++||+++|+++|.++|+.|++.+++       |-.. ...||.+.||.++|||.+
T Consensus       243 ~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~-~~~~l~d~pn~ic~~~ta  314 (435)
T KOG0067|consen  243 LNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSF-KQGPLKDAPNLICTPHTA  314 (435)
T ss_pred             cCcccccccccccceeecccceEeeecccccCChHHHHhhhccCceeccc-------Cccc-ccccccCCCCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999988       2221 124788999999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHH-hHcCCCCCCCCCCcccccccC
Q psy6348         242 ASTKEAQIRVAVEIAEQFIA-LANTNPQYTSIQGVLNAPALA  282 (333)
Q Consensus       242 ~~t~ea~~~~~~~~~~~i~~-~~~~~~~~~~~~~~vn~~~~~  282 (333)
                      ++++.+..++-+.++..+++ +.+.-|+  .++++||++.+.
T Consensus       315 ~~~e~~~~e~re~aa~eiR~ai~g~ip~--~l~~cvnkE~~~  354 (435)
T KOG0067|consen  315 WYSEAASVELREVAALEIRRAITGRIPD--SLRNCVNKEFSP  354 (435)
T ss_pred             hhhHHHHHHHHHHHhhhhhhccCCCCch--hHHHHHhhhhcc
Confidence            99999999999999999998 5555544  589999998654

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.89  E-value=2.6e-22  Score=199.99  Aligned_cols=169  Identities=20%  Similarity=0.235  Sum_probs=141.6

Q ss_pred             cccCcCccC-hhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC
Q psy6348          29 AGTGVDNID-LTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG  107 (333)
Q Consensus        29 ~g~G~d~iD-~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG  107 (333)
                      +++|+...- ++...+.||+|+|+|++++.+++|+++++++++.      +..+|.+        +.++.||+++|||+|
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~--------~~~LaGKtVgVIG~G  263 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT--------DVMIAGKTVVVCGYG  263 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc--------CCCcCCCEEEEECCC
Confidence            578887652 2333457899999999999999999999999988      3334433        468999999999999


Q ss_pred             hHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348         108 RIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       108 ~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN  186 (333)
                      .||+.+|+++++||++|++|++.+... .+...|++..++++++++||+|++|+    .++++|+++.|+.||+|++|||
T Consensus       264 ~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~MKpGAiLIN  339 (476)
T PTZ00075        264 DVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRMKNNAIVGN  339 (476)
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhccCCCcEEEE
Confidence            999999999999999999997765332 34556887789999999999999985    4789999999999999999999


Q ss_pred             ccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC
Q psy6348         187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS  222 (333)
Q Consensus       187 ~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~  222 (333)
                      ++|+   |++.+.++|+++.    ++|+++.||...
T Consensus       340 vGr~---d~Ei~i~aL~~~~----~vdv~evep~v~  368 (476)
T PTZ00075        340 IGHF---DNEIQVAELEAYP----GIEIVEIKPQVD  368 (476)
T ss_pred             cCCC---chHHhHHHHHhcC----CceeecccCCCC
Confidence            9999   6888888888754    789999999653

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.85  E-value=4.7e-21  Score=181.78  Aligned_cols=158  Identities=22%  Similarity=0.272  Sum_probs=130.4

Q ss_pred             EEEeCCCCCCHHHhcccCcceEEEcccCcCccChh-hHhhCCcEEE------ECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           5 LVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLT-AATRKGVLVL------NAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         5 liv~s~~~v~~~~l~~~~Lk~I~~~g~G~d~iD~~-aa~~~gI~V~------n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++......+++++|+..|.  ++...+|+++.|++ +|+++||.|+      |.+.+|+.++||+++++++..       
T Consensus        74 ~~~~~~~~l~~~~l~~~~~--~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~-------  144 (287)
T TIGR02853        74 VFSNEKVVLTPELLESTKG--HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH-------  144 (287)
T ss_pred             ccccCCccccHHHHHhcCC--CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh-------
Confidence            3344455678999988774  55677888888887 9999999999      888899999999999988842       


Q ss_pred             chhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc---ChhhhccCC
Q psy6348          78 CQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL---GLEDIWPLA  153 (333)
Q Consensus        78 ~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~---~l~ell~~a  153 (333)
                                    .+.+++|++++|+|+|+||+.+|++|+++|++|++++++.. .+.+.+.|....   +++++++++
T Consensus       145 --------------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~a  210 (287)
T TIGR02853       145 --------------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEI  210 (287)
T ss_pred             --------------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccC
Confidence                          23478999999999999999999999999999999999763 233444565433   577889999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      |+|++|+|.     .+++++.++.||+++++||++..
T Consensus       211 DiVint~P~-----~ii~~~~l~~~k~~aliIDlas~  242 (287)
T TIGR02853       211 DIVINTIPA-----LVLTADVLSKLPKHAVIIDLASK  242 (287)
T ss_pred             CEEEECCCh-----HHhCHHHHhcCCCCeEEEEeCcC
Confidence            999999995     36788899999999999999874

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.76  E-value=2.6e-18  Score=144.70  Aligned_cols=63  Identities=46%  Similarity=0.655  Sum_probs=58.3

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHH
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELT   63 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~   63 (333)
                      ++|++++++.+++++++|+.+| ||+|++.|+|+||||+++|+++||.|+|+||+++.+||||+
T Consensus        38 ~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   38 DADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            5899999998889999999999 99999999999999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.68  E-value=4.7e-16  Score=148.24  Aligned_cols=151  Identities=19%  Similarity=0.218  Sum_probs=124.5

Q ss_pred             CCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCC------CchHHHHHHHHHHHHHhcCCCccchhhhcC
Q psy6348          12 KVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGG------NFISACELTCSLISALSRNVPQGCQSLKEG   84 (333)
Q Consensus        12 ~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~------n~~avAE~~l~l~l~~~R~i~~~~~~~~~g   84 (333)
                      .++++.++..| +..+. .|.+.+++| +.|.++||.+++.+..      |+.++||.++.+.+.               
T Consensus        82 ~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~---------------  144 (296)
T PRK08306         82 VLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIE---------------  144 (296)
T ss_pred             cchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHH---------------
Confidence            34788999998 86444 699999998 8899999999998864      999999998876542               


Q ss_pred             cccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc---ChhhhccCCCEEEEec
Q psy6348          85 KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL---GLEDIWPLADYITVHT  160 (333)
Q Consensus        85 ~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~---~l~ell~~aDvV~l~~  160 (333)
                            ..+.+++|++++|+|+|.+|+.+++.|+++|++|+++|++. ..+.+++.|.+..   ++.+.++++|+|+.++
T Consensus       145 ------~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~  218 (296)
T PRK08306        145 ------HTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTI  218 (296)
T ss_pred             ------hCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECC
Confidence                  11246789999999999999999999999999999999986 3345566776654   5678889999999999


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      |.     .+++++.++.|++++++||++..
T Consensus       219 p~-----~~i~~~~l~~~~~g~vIIDla~~  243 (296)
T PRK08306        219 PA-----LVLTKEVLSKMPPEALIIDLASK  243 (296)
T ss_pred             Ch-----hhhhHHHHHcCCCCcEEEEEccC
Confidence            83     56788999999999999999753

>PLN02494 adenosylhomocysteinase

Probab=99.67  E-value=1.6e-16  Score=158.27  Aligned_cols=121  Identities=23%  Similarity=0.238  Sum_probs=107.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ..+.||+++|+|+|.||+.+|+++++||++|+++++.+. ...+...|+...+++++++.+|+|+.+    ..++++++.
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~t----TGt~~vI~~  325 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTT----TGNKDIIMV  325 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEEC----CCCccchHH
Confidence            347899999999999999999999999999999988763 345667788777899999999999974    467899999


Q ss_pred             HHHhccCCCcEEEEccC-CcccchHhHHhh--hhcCCceEEEeccCCCCC
Q psy6348         173 EVLKKCKKGVRVVNVAR-GGIVDENALLDS--LKCGHCGGAALDVFCEEP  219 (333)
Q Consensus       173 ~~~~~mk~gailIN~aR-g~~vd~~aL~~a--L~~g~i~gaalDV~~~EP  219 (333)
                      +.|+.||+|++|+|++| +..||+++|.++  ++.+.++ +.+|+|+.|-
T Consensus       326 e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        326 DHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             HHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            99999999999999999 689999999998  9999998 9999999863

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.61  E-value=2e-15  Score=144.06  Aligned_cols=92  Identities=24%  Similarity=0.254  Sum_probs=81.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ..|+||||||||+|+||+++|++|+++|++|++|++.. +.+.+...|++..+++|++++||+|++|+|+ ++++++++.
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~   90 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA   90 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence            57999999999999999999999999999999997643 4455666788777999999999999999997 778999999


Q ss_pred             HHHhccCCCcEEEE
Q psy6348         173 EVLKKCKKGVRVVN  186 (333)
Q Consensus       173 ~~~~~mk~gailIN  186 (333)
                      +.++.||+|++|+-
T Consensus        91 eil~~MK~GaiL~f  104 (335)
T PRK13403         91 EVEENLREGQMLLF  104 (335)
T ss_pred             HHHhcCCCCCEEEE
Confidence            99999999998863

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.59  E-value=6.1e-15  Score=145.63  Aligned_cols=120  Identities=23%  Similarity=0.293  Sum_probs=104.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ..+.|++++|+|+|.||+.+|++++++|++|+++|+.+. ...+...|+...+++++++++|+|+.++    .+.++++.
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaT----G~~~vI~~  266 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITAT----GNKDVIRG  266 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECC----CCHHHHHH
Confidence            347899999999999999999999999999999987653 3445566887778899999999998765    46889999


Q ss_pred             HHHhccCCCcEEEEccCCcc-cchHhHHhhhhcCCceEEEeccCCC
Q psy6348         173 EVLKKCKKGVRVVNVARGGI-VDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~-vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      +.|..||+|++++|++|+.+ ||.++|.+++.+....+..+|+|.-
T Consensus       267 ~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~  312 (406)
T TIGR00936       267 EHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL  312 (406)
T ss_pred             HHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence            99999999999999999998 9999999998877777789998874

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.50  E-value=5.5e-14  Score=139.65  Aligned_cols=153  Identities=24%  Similarity=0.269  Sum_probs=116.8

Q ss_pred             cccCcCcc-ChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccc-cCCCccccCCCEEEEEec
Q psy6348          29 AGTGVDNI-DLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDR-KLYTGTELYGKTLAVLGL  106 (333)
Q Consensus        29 ~g~G~d~i-D~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~-~~~~g~~l~gktvGIIGl  106 (333)
                      +++|+... .++...+.+++|+|.+.+++.+..|...               .+.++.|+. ....+..+.|++++|+|+
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~---------------gt~~s~~~ai~rat~~~l~Gk~VlViG~  220 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRY---------------GTGESLLDGIKRATNVLIAGKVVVVAGY  220 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccH---------------HHHhhhHHHHHHhccCCCCCCEEEEECC
Confidence            68888775 3333456789999999988887433222               223344431 012245689999999999


Q ss_pred             ChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEE
Q psy6348         107 GRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV  185 (333)
Q Consensus       107 G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI  185 (333)
                      |.||+.+|++++++|++|+++|+.+.. ..+...|++..+++++++.+|+|+.++    .+.++++.+.++.||+|++++
T Consensus       221 G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aT----G~~~vI~~~~~~~mK~Gaili  296 (425)
T PRK05476        221 GDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTAT----GNKDVITAEHMEAMKDGAILA  296 (425)
T ss_pred             CHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECC----CCHHHHHHHHHhcCCCCCEEE
Confidence            999999999999999999999987633 344556777678999999999998875    457789999999999999999


Q ss_pred             EccCCcc-cchHhHHh
Q psy6348         186 NVARGGI-VDENALLD  200 (333)
Q Consensus       186 N~aRg~~-vd~~aL~~  200 (333)
                      |+++... +|.++|.+
T Consensus       297 NvG~~d~Eid~~~L~~  312 (425)
T PRK05476        297 NIGHFDNEIDVAALEE  312 (425)
T ss_pred             EcCCCCCccChHHHhh
Confidence            9999876 77777654

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.49  E-value=6.1e-14  Score=122.25  Aligned_cols=114  Identities=16%  Similarity=0.224  Sum_probs=91.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc-HHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN-AEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~-~~~~  175 (333)
                      ++|||||+|+||+.+|++|...|++|++||++.. .+...+.|++.+ ++.|++++||+|++++|..++++.++. .+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            5899999999999999999999999999998763 345556677665 899999999999999998888888763 2277


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +.+++|.++||++...+-....+.+.+++..+  ..+|.
T Consensus        82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vda  118 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVDA  118 (163)
T ss_dssp             GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEEE
T ss_pred             hccccceEEEecCCcchhhhhhhhhhhhhccc--eeeee
Confidence            88999999999999999999999999987765  46665

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.47  E-value=2.3e-13  Score=128.48  Aligned_cols=113  Identities=19%  Similarity=0.189  Sum_probs=101.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AE  173 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~  173 (333)
                      .+||+||+|.||.+||++|...|++|.+||+.+..  +.+...|.+.. +..|+.+++|+|++|+|..++.+.++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            48999999999999999999999999999998733  45566688765 778999999999999999999999885  57


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD  213 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD  213 (333)
                      .++.+|+|.++||+++.++.....+.+++++..+.  .+|
T Consensus        81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lD  118 (286)
T COG2084          81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLD  118 (286)
T ss_pred             hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEe
Confidence            88999999999999999999999999999998875  556

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.38  E-value=2.1e-12  Score=122.53  Aligned_cols=121  Identities=17%  Similarity=0.244  Sum_probs=97.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  174 (333)
                      ++|||||+|.||+.+|+.+...|++|++||++.. .+...+.|+... ++++++++||+|++|+|.+..++.++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            5899999999999999999999999999999763 334455666554 788999999999999998888888763  346


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP  219 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP  219 (333)
                      ++.+++|.++||+++..+...+++.+.+++..+...---|+..+|
T Consensus        83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            778999999999999999989999999987665433333454433

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.38  E-value=1.7e-12  Score=112.82  Aligned_cols=104  Identities=25%  Similarity=0.353  Sum_probs=75.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      ...+.||++.|+|||.+|+.+|++|+++|.+|++++..+ ..-.+...|++..+++++++++|+++.++.    .+.++.
T Consensus        18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~   93 (162)
T PF00670_consen   18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVIT   93 (162)
T ss_dssp             -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred             ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccC
Confidence            467899999999999999999999999999999999876 334556679988899999999999998764    467889


Q ss_pred             HHHHhccCCCcEEEEccCCcc-cchHhHHh
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI-VDENALLD  200 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~-vd~~aL~~  200 (333)
                      .+.|++||+|+++.|++.-.. +|.+.|.+
T Consensus        94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   94 GEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            999999999999999976443 44444443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.38  E-value=2.5e-12  Score=121.87  Aligned_cols=109  Identities=14%  Similarity=0.221  Sum_probs=91.6

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhc-c-HHHH
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLI-N-AEVL  175 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li-~-~~~~  175 (333)
                      +|||||+|.||+.+|+++...|++|++||++.. .+...+.|.... +.++++++||+|++|+|..+.++.++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            589999999999999999999999999999762 334455666443 78899999999999999888887775 3 3467


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +.+++|+++||+++..+.+.+++.+.+++..+.
T Consensus        81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            788999999999999999999999999886544

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.34  E-value=5.7e-12  Score=120.05  Aligned_cols=114  Identities=14%  Similarity=0.219  Sum_probs=95.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  174 (333)
                      ++|||||+|.||..+|+.|...|++|++||++... +...+.|.... +..+++++||+|++|+|.....+.++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            48999999999999999999999999999997632 34445566543 788899999999999998777777764  346


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +..+++|.++||++++.+...+.+.+.+.+..+.  .+|.
T Consensus        82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda  119 (296)
T PRK15461         82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV  119 (296)
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence            7789999999999999999999999999988765  4553

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.32  E-value=8.7e-12  Score=118.94  Aligned_cols=111  Identities=26%  Similarity=0.340  Sum_probs=94.2

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccC---CCEEEEecCCchhhHhhccHHH
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPL---ADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~---aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      +|||||+|+||+.+|++|...|++|++||++.+ .+...+.|+... ++++++++   +|+|++|+|..+.++.++ .+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i   80 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL   80 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence            799999999999999999999999999999763 244455676654 78888776   699999999877888887 467


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD  213 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD  213 (333)
                      ++.+++|.++||+++....+..++.+.+++..+.  .+|
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            7889999999999999999999999999887764  466

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.29  E-value=1.1e-11  Score=119.54  Aligned_cols=95  Identities=24%  Similarity=0.280  Sum_probs=80.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      ..|+||+|||||+|+||+++|+.|+.+|++|+++++..  +.+.+.+.|+...+.++++++||+|++++|.+.. ..+++
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~   91 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE   91 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence            46899999999999999999999999999999887653  3455666788777999999999999999997654 77777


Q ss_pred             HHHHhccCCCcEEEEccCC
Q psy6348         172 AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg  190 (333)
                      ++.+..|++|++| -.+.|
T Consensus        92 ~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         92 EEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             HHHHhcCCCCCEE-EECCC
Confidence            8888999999988 55555

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.26  E-value=2.5e-11  Score=120.47  Aligned_cols=104  Identities=23%  Similarity=0.320  Sum_probs=89.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +..+.|++++|+|+|.||+.+|++++++|++|+++|+.+ ..+.+...|+...++++.++.+|+|+.++.    +.++++
T Consensus       197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~  272 (413)
T cd00401         197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIIT  272 (413)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHH
Confidence            456899999999999999999999999999999999876 456677889877778899999999998753    467888


Q ss_pred             HHHHhccCCCcEEEEccCCcc-cchHhHHh
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI-VDENALLD  200 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~-vd~~aL~~  200 (333)
                      ...+..||+|++++|++++.+ +|..+|..
T Consensus       273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             HHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            888999999999999999876 77777654

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PLN02712 arogenate dehydrogenase

Probab=99.26  E-value=3e-11  Score=126.73  Aligned_cols=114  Identities=19%  Similarity=0.262  Sum_probs=92.5

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-Chhhhcc-CCCEEEEecCCchhhHh
Q psy6348          91 YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWP-LADYITVHTPLIPQTKN  168 (333)
Q Consensus        91 ~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~-~aDvV~l~~P~t~~t~~  168 (333)
                      ..+.++.+++|||||+|.||+.+|+.++++|++|++||+....+.+.+.|+... ++++++. .+|+|++|+| ...+..
T Consensus       362 ~~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~  440 (667)
T PLN02712        362 GCVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEK  440 (667)
T ss_pred             hccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHH
Confidence            457888999999999999999999999999999999999754345566777544 6888775 5999999999 467888


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      ++.+-....||+|++++|++.++-...+.+.+.+..+
T Consensus       441 vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~  477 (667)
T PLN02712        441 VLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQD  477 (667)
T ss_pred             HHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCC
Confidence            8876555579999999999999866666666666543

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.25  E-value=4.3e-11  Score=114.24  Aligned_cols=112  Identities=24%  Similarity=0.270  Sum_probs=94.4

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccC---CCEEEEecCCchhhHhhccHHH
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPL---ADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~---aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      +|||||+|.||+.+|++|...|++|.+||++.. .+...+.|+... +++++++.   +|+|++++|..+.++.++ ...
T Consensus         2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l   80 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL   80 (301)
T ss_pred             EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence            799999999999999999999999999999763 344455677655 78888775   699999999877778877 466


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ++.+++|.++||++++.......+.+.+++..+.  .+|.
T Consensus        81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da  118 (301)
T PRK09599         81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV  118 (301)
T ss_pred             HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence            7889999999999999999999999999888775  4464

>PLN02256 arogenate dehydrogenase

Probab=99.23  E-value=2.7e-10  Score=109.18  Aligned_cols=108  Identities=19%  Similarity=0.237  Sum_probs=85.7

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-Chhhhc-cCCCEEEEecCCchhhHhhccHH
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIW-PLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell-~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      -.+++|||||+|.||+.+|+.+++.|++|++||+....+.+.+.|+... ++++++ .++|+|++|+|. ..+..++.+-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHhh
Confidence            4678999999999999999999999999999998864455566677543 677776 479999999994 4677777543


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ....+++++++++++..+-...+++.+.+..
T Consensus       113 ~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~  143 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE  143 (304)
T ss_pred             hhhccCCCCEEEecCCchHHHHHHHHHhCCC
Confidence            3567899999999999766666677776654

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.22  E-value=6.1e-11  Score=112.92  Aligned_cols=112  Identities=18%  Similarity=0.238  Sum_probs=93.5

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH--HHHh
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA--EVLK  176 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~--~~~~  176 (333)
                      +|||||+|+||+.+|++|...|++|.+||+....+...+.|...+ +..++.++||+|++|+|..+..+.++..  ..++
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~   81 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK   81 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence            799999999999999999999999999998765444555676544 7888999999999999988787777632  3567


Q ss_pred             ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348         177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD  213 (333)
Q Consensus       177 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD  213 (333)
                      .+++|.++|+++...+-....+.+.+++..+.  .+|
T Consensus        82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd  116 (292)
T PRK15059         82 ASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD  116 (292)
T ss_pred             cCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence            78999999999999999999999998876553  455

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.19  E-value=1e-10  Score=118.51  Aligned_cols=119  Identities=11%  Similarity=0.078  Sum_probs=98.6

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh----cCcc----ccChhhhccC---CCEEEEecCCchhhH
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK----LNIA----SLGLEDIWPL---ADYITVHTPLIPQTK  167 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~gv~----~~~l~ell~~---aDvV~l~~P~t~~t~  167 (333)
                      +|||||+|.||+.||++|...|++|.+||++.+. +...+    .|..    ..+++|+++.   +|+|++++|..+.++
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            6999999999999999999999999999997643 22222    1542    2378888765   999999999999999


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP  219 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP  219 (333)
                      .++ ...++.+++|.++||++....-+...+.+.+++..+.....=|+..++
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            988 567888999999999999999999999999999888755555665554

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.13  E-value=4.4e-10  Score=107.21  Aligned_cols=108  Identities=19%  Similarity=0.229  Sum_probs=87.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccc-cChhh---hccCCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIAS-LGLED---IWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~-~~l~e---ll~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      ++|||||+|.||..+|++|...|++|.+||++... +...+.|... .++++   .+.++|+|++++|.. .++.++ ++
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~   78 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE   78 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence            37999999999999999999999999999997632 3444455433 24544   456789999999976 777777 56


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ..+.+++|.++||++.+...+...+.+.+++..+.
T Consensus        79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            67889999999999999989999999988876664

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=99.11  E-value=2.1e-10  Score=99.50  Aligned_cols=93  Identities=28%  Similarity=0.324  Sum_probs=70.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      |+||+|+|||||..|++.|..|+..|++|++-.+..  +.+.+++.|++..+..|+.++||+|++.+|+ +....+..++
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD-~~q~~vy~~~   80 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPD-EVQPEVYEEE   80 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-H-HHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCCh-HHHHHHHHHH
Confidence            689999999999999999999999999999776654  4578889999999999999999999999994 3334455678


Q ss_pred             HHhccCCCcEEEEccCC
Q psy6348         174 VLKKCKKGVRVVNVARG  190 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg  190 (333)
                      ....||+|..|+ .+.|
T Consensus        81 I~p~l~~G~~L~-fahG   96 (165)
T PF07991_consen   81 IAPNLKPGATLV-FAHG   96 (165)
T ss_dssp             HHHHS-TT-EEE-ESSS
T ss_pred             HHhhCCCCCEEE-eCCc
Confidence            888999999876 3444

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=99.10  E-value=3.9e-10  Score=108.50  Aligned_cols=95  Identities=28%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      |+||+|||||+|+||+++|+.|+.+|++|+++++..  +.+.+.+.|++..+..+++++||+|++++|.... ...+.++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~-~~~v~~e   79 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQ-HEVYEAE   79 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhH-HHHHHHH
Confidence            579999999999999999999999999988765443  3344556788767888999999999999995423 4455566


Q ss_pred             HHhccCCCcEEEEccCCcc
Q psy6348         174 VLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~  192 (333)
                      ....|+++. +|.++.|=-
T Consensus        80 i~~~l~~g~-iVs~aaG~~   97 (314)
T TIGR00465        80 IQPLLKEGK-TLGFSHGFN   97 (314)
T ss_pred             HHhhCCCCc-EEEEeCCcc
Confidence            778888886 788888743

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PLN02858 fructose-bisphosphate aldolase

Probab=99.09  E-value=4.7e-10  Score=125.75  Aligned_cols=118  Identities=16%  Similarity=0.095  Sum_probs=99.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhc--cH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLI--NA  172 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li--~~  172 (333)
                      ..++||+||+|.||..||++|...|++|.+||++... +...+.|...+ ++.|+.++||+|++|+|..+..+.++  ..
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            3578999999999999999999999999999997633 44556677655 89999999999999999999988887  35


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ..++.+++|.++|++++..+-....+.+.+++..-....+|.
T Consensus        83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~~~~~lDa  124 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDA  124 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCCceEEEEc
Confidence            678889999999999999999999999999876621235664

>KOG0409|consensus

Probab=99.09  E-value=3e-10  Score=106.77  Aligned_cols=115  Identities=14%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--H
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--A  172 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~  172 (333)
                      ..++||+||+|.||..|+..|...|++|++||++.+ .....+.|.+.. +..|+.+.||+|+.++|...+.+.++.  .
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~  113 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKS  113 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCC
Confidence            468999999999999999999999999999999874 456677788776 799999999999999999999888874  3


Q ss_pred             HHHhccCCCcEE-EEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348         173 EVLKKCKKGVRV-VNVARGGIVDENALLDSLKCGHCGGAALD  213 (333)
Q Consensus       173 ~~~~~mk~gail-IN~aRg~~vd~~aL~~aL~~g~i~gaalD  213 (333)
                      ..++.+++|... |+.+.-+..-...|.++++....+  .+|
T Consensus       114 Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~--~vD  153 (327)
T KOG0409|consen  114 GVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR--FVD  153 (327)
T ss_pred             cceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe--EEe
Confidence            467778888777 999999999999999999987664  455

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.06  E-value=5.5e-10  Score=105.92  Aligned_cols=109  Identities=19%  Similarity=0.208  Sum_probs=89.9

Q ss_pred             EEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHHHhcc
Q psy6348         103 VLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEVLKKC  178 (333)
Q Consensus       103 IIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~~~~m  178 (333)
                      |||+|.||..+|++|...|++|++||++.. .+...+.|+... ++.+++++||+|++|+|.....+.++.  ....+.+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            689999999999999999999999999763 344555676544 788999999999999998777777763  4566789


Q ss_pred             CCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348         179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD  213 (333)
Q Consensus       179 k~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD  213 (333)
                      ++|.++||++...+-....+.+.+++..+.  .+|
T Consensus        81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        81 AKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            999999999998888888898888875554  456

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=99.06  E-value=2.1e-10  Score=113.76  Aligned_cols=103  Identities=24%  Similarity=0.300  Sum_probs=81.9

Q ss_pred             cccccCCC-c-cccCCCEEEEEecChHHHHHHHHHhhCCCEEEE------EcCCC-CHHHHHhcCccccChhhhccCCCE
Q psy6348          85 KWDRKLYT-G-TELYGKTLAVLGLGRIGREVALRMQAFGMKVIG------FDPMV-SVEDAAKLNIASLGLEDIWPLADY  155 (333)
Q Consensus        85 ~w~~~~~~-g-~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~------~d~~~-~~~~a~~~gv~~~~l~ell~~aDv  155 (333)
                      -|+|..|. + ..|+||||+|||+|.+|+.-|..|+..|++|++      .|... +.+.+.+.|+...+++|++++||+
T Consensus        21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv  100 (487)
T PRK05225         21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL  100 (487)
T ss_pred             ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence            37776663 3 579999999999999999888888888888772      22222 445566678888899999999999


Q ss_pred             EEEecCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      |++.+|++ . ++.+.++.++.||+|+.|. .|.|
T Consensus       101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHG  132 (487)
T PRK05225        101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHG  132 (487)
T ss_pred             EEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCC
Confidence            99999988 3 7777799999999999876 4444

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.05  E-value=9.6e-10  Score=111.11  Aligned_cols=119  Identities=15%  Similarity=0.160  Sum_probs=96.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh----cCcc---ccChhhhcc---CCCEEEEecCCchhhH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK----LNIA---SLGLEDIWP---LADYITVHTPLIPQTK  167 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----~gv~---~~~l~ell~---~aDvV~l~~P~t~~t~  167 (333)
                      .+|||||+|.||+.+|++|...|++|.+||++.+. +...+    .|..   ..+++|++.   ++|+|++++|..+.++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            47999999999999999999999999999997643 22222    1422   237888876   5899999999888999


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE  218 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E  218 (333)
                      .++ .+.++.+++|.++||++.+..-+...+.+.+.+..+.....=|...+
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~  131 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGE  131 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCH
Confidence            988 56778899999999999999999999999999988864444444443

>PLN02858 fructose-bisphosphate aldolase

Probab=99.05  E-value=8.1e-10  Score=123.85  Aligned_cols=115  Identities=15%  Similarity=0.123  Sum_probs=96.5

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhc--cHH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLI--NAE  173 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li--~~~  173 (333)
                      .++|||||+|.||..||++|...|++|++||++... +.....|... .+..+++++||+|++|+|..++++.++  ...
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            488999999999999999999999999999997633 3445556544 378899999999999999988888887  345


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhc--CCceEEEecc
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKC--GHCGGAALDV  214 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~--g~i~gaalDV  214 (333)
                      .++.+++|.++|+++...+-..+.+.+.+++  ..+  ..+|.
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~--~~lDA  444 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDI--KLVDA  444 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCc--EEEEc
Confidence            7888999999999999999999999999987  444  35553

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.04  E-value=3.5e-09  Score=106.27  Aligned_cols=133  Identities=23%  Similarity=0.232  Sum_probs=96.6

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      ++|+||| +|.||+.+|+.|+..|++|.+||+....  +.+.+.|+... +.++.+.+||+|++|+|. ..+..++ .+.
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l   78 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV   78 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence            4799997 8999999999999999999999987633  34555677544 678889999999999995 4556665 556


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCC
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL  240 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi  240 (333)
                      .+.+++++++++++..+....+++.+.+..+. .  .+..   -|...+ ..+++....+++||+-
T Consensus        79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~-~--~V~~---HPmaGp-~~~~~~g~~~il~p~~  137 (437)
T PRK08655         79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV-E--ILPT---HPMFGP-RTPSLKGQVVILTPTE  137 (437)
T ss_pred             HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC-E--EEEc---CCCCCC-CCcccCCCEEEEecCC
Confidence            67799999999999876666666766654421 1  1221   222111 1256677889999965

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.01  E-value=6.2e-09  Score=98.33  Aligned_cols=138  Identities=14%  Similarity=0.136  Sum_probs=88.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcc-cc-ChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIA-SL-GLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~-~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      ++|||||+|.||+++|..|+..|++|++||+.. ..+.+.+.|.. .. +..+.+++||+|++|+|.. ....++ ++..
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~-~~~~~~-~~l~   78 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIG-LLLPPS-EQLI   78 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHHH
Confidence            379999999999999999999999999999875 33445555542 12 3335688999999999943 334443 5666


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc-CCCCCCC-CccchhhcCCCcEEEccCCCC
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV-FCEEPPK-SEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV-~~~EP~~-~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      +.+++++++++++.-..-.    .+++........+... +..|... ......|+..+++++||+-..
T Consensus        79 ~~l~~~~ii~d~~Svk~~~----~~~~~~~~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~  143 (279)
T PRK07417         79 PALPPEAIVTDVGSVKAPI----VEAWEKLHPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENT  143 (279)
T ss_pred             HhCCCCcEEEeCcchHHHH----HHHHHHhhCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCC
Confidence            7789999999998765332    2222221111122221 1222110 001123777889999997653

>PLN02712 arogenate dehydrogenase

Probab=99.01  E-value=1.4e-09  Score=114.27  Aligned_cols=108  Identities=22%  Similarity=0.266  Sum_probs=83.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-Chhhhc-cCCCEEEEecCCchhhHhhccHH
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIW-PLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell-~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      -..++|||||+|+||+.+|+.++.+|++|++||+....+.+.+.|+... ++++++ .++|+|++|+|. ..+..++..-
T Consensus        50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l  128 (667)
T PLN02712         50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL  128 (667)
T ss_pred             CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence            3456899999999999999999999999999999765556667787654 677765 569999999994 5778887664


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      .+..+++|++++|++.-+..-.+++.+.+..
T Consensus       129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~  159 (667)
T PLN02712        129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE  159 (667)
T ss_pred             hhhcCCCCeEEEECCCCcHHHHHHHHHhcCC
Confidence            4567999999999986654333445555543

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.99  E-value=1e-08  Score=98.06  Aligned_cols=147  Identities=20%  Similarity=0.227  Sum_probs=94.4

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCC-CHHHHHhcCcc---ccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMV-SVEDAAKLNIA---SLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~gv~---~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .++|+|||+|.||+.+|+.++..|.  +|++||+.. ..+.+.+.|+.   ..++++.+++||+|++++|.. .+..++ 
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~-   83 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA-   83 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence            4689999999999999999998885  899999976 33445556642   236778899999999999953 334443 


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe-ccCCCCCC-CCccchhhcCCCcEEEccCCCCCcHHHH
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL-DVFCEEPP-KSEQTFELIKHPKVIVTPHLGASTKEAQ  248 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal-DV~~~EP~-~~~~~~~L~~~pnvi~TPHi~~~t~ea~  248 (333)
                      ++....++++.++++++....-..+++.+.+.. .+..... =++..|-. +.....+|+...++++||+-++ +.++.
T Consensus        84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~-~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~-~~~~~  160 (307)
T PRK07502         84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE-GVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGT-DPAAV  160 (307)
T ss_pred             HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC-CCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCC-CHHHH
Confidence            455567899999999977553333444444332 2221221 12222210 0111136777788999997654 34433

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.97  E-value=3.3e-09  Score=107.22  Aligned_cols=117  Identities=17%  Similarity=0.189  Sum_probs=91.5

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc---C--ccc-cChhhhc---cCCCEEEEecCCchhhHhh
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL---N--IAS-LGLEDIW---PLADYITVHTPLIPQTKNL  169 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---g--v~~-~~l~ell---~~aDvV~l~~P~t~~t~~l  169 (333)
                      .|||||+|.||+.+|++|...|++|.+||++.+. +...+.   |  +.. .+++++.   +++|+|++++|..+.+..+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~V   80 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAV   80 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHH
Confidence            3899999999999999999999999999997633 333323   2  322 2566655   5799999999987888888


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      + .+.++.+++|.++||++....-+...+.+.+++..+.....=|...
T Consensus        81 i-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG  127 (467)
T TIGR00873        81 I-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG  127 (467)
T ss_pred             H-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence            8 4677889999999999999999999999999887775333334443

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.95  E-value=1.2e-08  Score=96.96  Aligned_cols=102  Identities=22%  Similarity=0.203  Sum_probs=77.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-----------HHhcC-------------ccccChhhhccCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-----------AAKLN-------------IASLGLEDIWPLA  153 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------v~~~~l~ell~~a  153 (333)
                      ++|||||+|.||..+|..+...|++|++||++... +.           ..+.|             ....+..+.+++|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            68999999999999999999999999999987632 21           11112             1222333568999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEE-EccCCcccchHhHHhhhh
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVV-NVARGGIVDENALLDSLK  203 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailI-N~aRg~~vd~~aL~~aL~  203 (333)
                      |+|+.|+|..++.+..+-.+..+.++++++|+ |+|.-.   ...+.+.+.
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~---~~~l~~~~~  132 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSIS---ITRLASATQ  132 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCC---HHHHHhhcC
Confidence            99999999999988888777778899999887 666654   344555554

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.95  E-value=1.1e-08  Score=98.76  Aligned_cols=116  Identities=18%  Similarity=0.203  Sum_probs=86.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-----------hcC---------cccc-ChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-----------KLN---------IASL-GLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g---------v~~~-~l~ell~~aDvV  156 (333)
                      ++|||||.|.||..+|..+...|++|..||+.... +.+.           +.+         ++.. ++++.+++||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            68999999999999999999999999999997532 1111           111         1222 688999999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      +-++|...+.+..+-++.-+.++++++| .++.. -+...++.++++. .=+..++..|.+
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS-~l~~s~la~~~~~-p~R~~g~HffnP  145 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAII-ASSTS-GLLPTDFYARATH-PERCVVGHPFNP  145 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCC-ccCHHHHHHhcCC-cccEEEEecCCc
Confidence            9999999999998888888999999844 44444 3466777777753 233356666543

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.94  E-value=1.3e-08  Score=101.66  Aligned_cols=106  Identities=22%  Similarity=0.213  Sum_probs=77.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc---cChhhh---------------ccCCCEEEEec
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS---LGLEDI---------------WPLADYITVHT  160 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~---~~l~el---------------l~~aDvV~l~~  160 (333)
                      ++|+|||+|.||..+|..|+..|++|++||+....-.....|...   ..++++               +++||+|++|+
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v   83 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV   83 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence            689999999999999999999999999999876433332333211   123333               34799999999


Q ss_pred             CCc------hhhHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         161 PLI------PQTKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       161 P~t------~~t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      |..      ++...+.  -+...+.+++|+++|+.|.-.+-..+.+...+.+
T Consensus        84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence            953      1222222  2556778999999999999888888888877765

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.93  E-value=2.1e-08  Score=95.05  Aligned_cols=113  Identities=19%  Similarity=0.171  Sum_probs=81.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-------hcC-----------------ccc-cChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-------KLN-----------------IAS-LGLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-------~~g-----------------v~~-~~l~ell~~  152 (333)
                      ++|+|||+|.||..+|..+...|++|++||+.... +.+.       ..+                 +.. .++++.+++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            58999999999999999999999999999987522 2211       011                 122 267789999


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEE-EEccCCcccchHhHHhhhhcCCceEEEeccC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRV-VNVARGGIVDENALLDSLKCGHCGGAALDVF  215 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gail-IN~aRg~~vd~~aL~~aL~~g~i~gaalDV~  215 (333)
                      ||+|+.|+|...+.+..+-.+..+.+++++++ +|+|.-.+   ..+.+.++. .-+..++..|
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~  141 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF  141 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC
Confidence            99999999987777666656666778999877 78877555   445555543 2233566666

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.92  E-value=1.1e-08  Score=102.48  Aligned_cols=136  Identities=17%  Similarity=0.147  Sum_probs=92.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc-----------------ccChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-----------------SLGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~-----------------~~~l~ell~~aDvV~l~~P  161 (333)
                      .+|||||+|.||..+|..+.. |++|++||+....-.....|..                 ..+..+.+++||++++|+|
T Consensus         7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp   85 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP   85 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence            689999999999999999877 7999999997644222223332                 2233456899999999999


Q ss_pred             Cc------hhhHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC--CceEEEec---cCCCCCCCC-ccchh
Q psy6348         162 LI------PQTKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG--HCGGAALD---VFCEEPPKS-EQTFE  227 (333)
Q Consensus       162 ~t------~~t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g--~i~gaalD---V~~~EP~~~-~~~~~  227 (333)
                      ..      ++...+.  .+...+.+++|.++|+.|+-.+-..+.+++.+...  .+. +.-|   +|.+||... .....
T Consensus        86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~-~~~~~~~~~~PE~v~~G~a~~~  164 (425)
T PRK15182         86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMT-FNQDFYVGYSPERINPGDKKHR  164 (425)
T ss_pred             CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCC-cCCCeeEeeCCCcCCCCccccc
Confidence            55      2334554  34567889999999999999998888764444332  221 1112   366788542 11245


Q ss_pred             hcCCCcEEE
Q psy6348         228 LIKHPKVIV  236 (333)
Q Consensus       228 L~~~pnvi~  236 (333)
                      +...|+++.
T Consensus       165 ~~~~~riv~  173 (425)
T PRK15182        165 LTNIKKITS  173 (425)
T ss_pred             ccCCCeEEE
Confidence            667777753

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.92  E-value=2.4e-09  Score=84.52  Aligned_cols=88  Identities=23%  Similarity=0.299  Sum_probs=65.5

Q ss_pred             EEEEEecChHHHHHHHHHhhCC---CEEE-EEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348         100 TLAVLGLGRIGREVALRMQAFG---MKVI-GFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G---~~V~-~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      ||||||+|+||+.+++.+...|   .+|+ +++++...  +.+++.++...  +..+++++||+|++++|. .....++ 
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p-~~~~~v~-   78 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKP-QQLPEVL-   78 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-G-GGHHHHH-
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECH-HHHHHHH-
Confidence            7999999999999999999999   9999 55886632  33456665433  689999999999999994 3334443 


Q ss_pred             HHHHhccCCCcEEEEccCC
Q psy6348         172 AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg  190 (333)
                      .+. ....++.++|++.-|
T Consensus        79 ~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   79 SEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             HHH-HHHHTTSEEEEESTT
T ss_pred             HHH-hhccCCCEEEEeCCC
Confidence            333 667889999998654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.90  E-value=6.1e-09  Score=99.72  Aligned_cols=82  Identities=23%  Similarity=0.256  Sum_probs=68.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      .+++|||||+|.||+.+|++|...|++|.+|++...           .+++++++++|+|++++|. +..+.++.. ...
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~-l~~   69 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQ-VQA   69 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHH-HHH
Confidence            457899999999999999999999999999998642           3577888999999999996 577777633 323


Q ss_pred             -ccCCCcEEEEccCCc
Q psy6348         177 -KCKKGVRVVNVARGG  191 (333)
Q Consensus       177 -~mk~gailIN~aRg~  191 (333)
                       .+++++++|++++|-
T Consensus        70 ~~~~~~~ivi~~s~gi   85 (308)
T PRK14619         70 LNLPPETIIVTATKGL   85 (308)
T ss_pred             hcCCCCcEEEEeCCcc
Confidence             478999999998853

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.90  E-value=3e-08  Score=93.95  Aligned_cols=136  Identities=22%  Similarity=0.265  Sum_probs=93.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEE--EcCCC-CHHHHHhcCcccc---C-hhhhccCCCEEEEecCCchhhHhhc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIG--FDPMV-SVEDAAKLNIASL---G-LEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~--~d~~~-~~~~a~~~gv~~~---~-l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .++|+|+|+|.||+.+|+.++..|+.|.+  +|++. ..+.+.++|+...   + ..+...+||+|++++|- ..|..++
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l   81 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL   81 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence            46899999999999999999999998755  45543 2344555676432   2 36778889999999994 4566665


Q ss_pred             cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCc-cchhhcCCCcEEEccCCC
Q psy6348         171 NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSE-QTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~-~~~~L~~~pnvi~TPHi~  241 (333)
                       ++....+|+|+++++++.-+---.+++.+.+..+. ...+.     =|-..+ ...+++..-.+++||.-.
T Consensus        82 -~~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~-----HPM~G~~~~~~lf~~~~~vltp~~~  146 (279)
T COG0287          82 -KELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGG-----HPMFGPEADAGLFENAVVVLTPSEG  146 (279)
T ss_pred             -HHhcccCCCCCEEEecccccHHHHHHHHHhccCCC-eeEec-----CCCCCCcccccccCCCEEEEcCCCC
Confidence             45555899999999998877666666665554432 22222     222111 124688888999999644

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.88  E-value=1.7e-08  Score=91.11  Aligned_cols=109  Identities=24%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-HhcCccccChhhhcc-CCCEEEEecCCchhhHhh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-AKLNIASLGLEDIWP-LADYITVHTPLIPQTKNL  169 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~gv~~~~l~ell~-~aDvV~l~~P~t~~t~~l  169 (333)
                      +.++.||+++|+|+|+||+.+|++|..+|++|+++|+.... +.. ...|.+.++.++++. +||+++.|..     .++
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~   97 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV   97 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence            56789999999999999999999999999999999987532 222 333666666677775 7999886654     467


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ++.+.++.|+. .+++.-+-+.+-+ ..-.+.|++..+.
T Consensus        98 I~~~~~~~l~~-~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          98 INDDTIPQLKA-KAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             cCHHHHHHcCC-CEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            88888888864 4666666666654 4455666666664

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.88  E-value=5.8e-09  Score=100.21  Aligned_cols=101  Identities=27%  Similarity=0.375  Sum_probs=85.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      -+.||++.|.|||.+|+.+|.++++.|++|+++.-.+ ..-.+...|++..+++++.+.+|+++.++    .++++|..+
T Consensus       206 liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~T----GnkdVi~~e  281 (420)
T COG0499         206 LLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTAT----GNKDVIRKE  281 (420)
T ss_pred             eecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEcc----CCcCccCHH
Confidence            4789999999999999999999999999999986554 22345566999899999999999999986    568999999


Q ss_pred             HHhccCCCcEEEEccCCcc-cchHhHH
Q psy6348         174 VLKKCKKGVRVVNVARGGI-VDENALL  199 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~-vd~~aL~  199 (333)
                      .|..||+|+++.|.+.-.+ ||...|.
T Consensus       282 h~~~MkDgaIl~N~GHFd~EI~~~~L~  308 (420)
T COG0499         282 HFEKMKDGAILANAGHFDVEIDVAGLE  308 (420)
T ss_pred             HHHhccCCeEEecccccceeccHHHHH
Confidence            9999999999999986554 5555544

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.87  E-value=1.8e-08  Score=94.09  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=78.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC----EEEEE-cCCCCH-HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM----KVIGF-DPMVSV-EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~-d~~~~~-~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .+|||||+|+||+++++.|...|+    +|++| |+.... +.+.+.|+... +..+++++||+|++|+| ....+.++ 
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl-   78 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVL-   78 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHH-
Confidence            379999999999999999998888    89999 876532 34455677654 67888999999999997 55667776 


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        79 ~~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~~  109 (266)
T PLN02688         79 TELRPLLSKDKLLVSVAAG--ITLADLQEWAGG  109 (266)
T ss_pred             HHHHhhcCCCCEEEEecCC--CcHHHHHHHcCC
Confidence            3455667899999988666  466666665543

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.85  E-value=5.8e-08  Score=95.06  Aligned_cols=139  Identities=23%  Similarity=0.219  Sum_probs=90.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH-HHhcCccc-----cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED-AAKLNIAS-----LGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~gv~~-----~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ++|+|||+|.||+++|+.++..|++|.+|++...... ....+...     .++++++++||+|++|+|. ..+..++ .
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl-~   78 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALL-A   78 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHH-H
Confidence            5799999999999999999999998888887664332 22233221     2567889999999999996 4566666 3


Q ss_pred             HHHh-ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccC---CCCCCC-CccchhhcCCCcEEEccCCCC
Q psy6348         173 EVLK-KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF---CEEPPK-SEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       173 ~~~~-~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~---~~EP~~-~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      +... .+++++++.+++.-+.-..+++.+.+.. ...  .++.+   ..|-.. ......|+.....++||+-..
T Consensus        79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~-~~~--~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~  150 (359)
T PRK06545         79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGD-LIR--FVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHT  150 (359)
T ss_pred             HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCC-CCe--EEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCC
Confidence            3333 4889999999988765444454444222 122  22222   111000 000125777888999997653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.84  E-value=1.2e-07  Score=89.81  Aligned_cols=136  Identities=20%  Similarity=0.176  Sum_probs=90.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-------------------------cCccc-cChhhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-------------------------LNIAS-LGLEDIWP  151 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------------~gv~~-~~l~ell~  151 (333)
                      ++|+|||.|.||..+|..+...|++|+.||+.... +.+.+                         ..+.. .++++.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            58999999999999999999999999999987521 22111                         01122 26778899


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCC
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH  231 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~  231 (333)
                      .||+|+.++|...+.+.-+-++..+.++++++|+..+.+-  ....+.+.++... +..++..|.          |.+..
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~--~~~~~~~~~~~~~-r~vg~Hf~~----------p~~~~  150 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTL--LPSQFAEATGRPE-KFLALHFAN----------EIWKN  150 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccC--CHHHHHhhcCCcc-cEEEEcCCC----------CCCcC
Confidence            9999999999766666655566667789999885443332  4455666654322 234444322          33355


Q ss_pred             CcEEEccCCCCCcHHHH
Q psy6348         232 PKVIVTPHLGASTKEAQ  248 (333)
Q Consensus       232 pnvi~TPHi~~~t~ea~  248 (333)
                      |.+.+.|+-.. +.+..
T Consensus       151 ~lvevv~~~~t-~~~~~  166 (287)
T PRK08293        151 NTAEIMGHPGT-DPEVF  166 (287)
T ss_pred             CeEEEeCCCCC-CHHHH
Confidence            77788886553 33444

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.81  E-value=8.5e-08  Score=90.30  Aligned_cols=98  Identities=19%  Similarity=0.433  Sum_probs=70.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCC-HHHHHhcCcc--ccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVS-VEDAAKLNIA--SLGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~~gv~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      ++|+|||+|.||+.+|..|+..|.  +|++||+... .+.+.+.|+.  ..+++++. +||+|++|+|.. .+..++ .+
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~   77 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PK   77 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HH
Confidence            379999999999999999998775  8999999752 3445566653  23667765 599999999953 444444 44


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ..+ +++++++++++.-    ...+.+++..
T Consensus        78 l~~-l~~~~iv~d~gs~----k~~i~~~~~~  103 (275)
T PRK08507         78 LLD-IKENTTIIDLGST----KAKIIESVPK  103 (275)
T ss_pred             Hhc-cCCCCEEEECccc----hHHHHHHHHH
Confidence            556 8999999997553    3445555543

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.81  E-value=2.7e-08  Score=93.92  Aligned_cols=101  Identities=21%  Similarity=0.257  Sum_probs=78.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC----EEEEEcCCCCH-HHHH-hcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM----KVIGFDPMVSV-EDAA-KLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a~-~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      ++|||||+|+||+++++.|...|+    +|++|||.... +.+. ++|++.. +..+++++||+|++|+|. .....++ 
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP-~~~~~vl-   80 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKP-DLYSSVI-   80 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeCh-HHHHHHH-
Confidence            589999999999999999988774    79999986632 3333 3677554 677889999999999994 5666666 


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLK  203 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~  203 (333)
                      ++....++++.++|++.-|  ++.+.|.+.+.
T Consensus        81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            4454567889999999888  67777777774

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.80  E-value=8e-08  Score=94.39  Aligned_cols=124  Identities=20%  Similarity=0.253  Sum_probs=82.7

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhh-CCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH-
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQA-FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE-  173 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~-~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~-  173 (333)
                      .-.||+|||+ |.||+.+|+.++. +|.+|++||+...         ...++++.+++||+|++|+|. ..+..++.+- 
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv-~~~~~~l~~l~   72 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPI-RHTAALIEEYV   72 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHHHHh
Confidence            4579999999 9999999999986 5999999998411         123577889999999999994 4555555321 


Q ss_pred             -HHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348         174 -VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH  239 (333)
Q Consensus       174 -~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH  239 (333)
                       ....+++++++.+++.-+---.+++    .....     ++...=|-..+....+++..++++||.
T Consensus        73 ~~~~~l~~~~iVtDVgSvK~~i~~~~----~~~~~-----~fVG~HPMaG~E~s~lf~g~~~iltp~  130 (370)
T PRK08818         73 ALAGGRAAGQLWLDVTSIKQAPVAAM----LASQA-----EVVGLHPMTAPPKSPTLKGRVMVVCEA  130 (370)
T ss_pred             hhhcCCCCCeEEEECCCCcHHHHHHH----HhcCC-----CEEeeCCCCCCCCCcccCCCeEEEeCC
Confidence             1134899999999988653222222    21111     122223322111135777888999996

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.77  E-value=1.4e-07  Score=93.00  Aligned_cols=123  Identities=17%  Similarity=0.102  Sum_probs=86.0

Q ss_pred             CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCH
Q psy6348          55 NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSV  133 (333)
Q Consensus        55 n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~  133 (333)
                      .....++..+-.++..+|...+.      . |    +.-..-..++|+||| +|.||+.+|+.|+..|+.|.+||+... 
T Consensus        66 l~~~~~~~i~~~i~~~s~~~q~~------~-~----~~~~~~~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-  133 (374)
T PRK11199         66 VPPDLIEDVLRRVMRESYSSEND------K-G----FKTLNPDLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-  133 (374)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhHH------h-c----ccccCcccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-
Confidence            34455677777777777653211      1 1    111122458999999 999999999999999999999998531 


Q ss_pred             HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhh
Q psy6348         134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSL  202 (333)
Q Consensus       134 ~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL  202 (333)
                                .+.++++++||+|++|+|.. .+..++ ++... +++|+++++++.-+..-..++.+.+
T Consensus       134 ----------~~~~~~~~~aDlVilavP~~-~~~~~~-~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~  189 (374)
T PRK11199        134 ----------DRAEDILADAGMVIVSVPIH-LTEEVI-ARLPP-LPEDCILVDLTSVKNAPLQAMLAAH  189 (374)
T ss_pred             ----------hhHHHHHhcCCEEEEeCcHH-HHHHHH-HHHhC-CCCCcEEEECCCccHHHHHHHHHhC
Confidence                      24567888999999999965 445555 33444 8999999999886544444555443

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.77  E-value=1.1e-07  Score=94.71  Aligned_cols=137  Identities=20%  Similarity=0.243  Sum_probs=88.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHh--------------------cC-ccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK--------------------LN-IAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-v~~-~~l~ell~~aDvV  156 (333)
                      ++|||||+|.||..+|..|...|++|++||+....-....                    .| +.. .++++++++||+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            3799999999999999999999999999998653211111                    13 333 2677889999999


Q ss_pred             EEecCCchh------hHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhh-hhc--CCceEEEecc---CCCCCCCC
Q psy6348         157 TVHTPLIPQ------TKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDS-LKC--GHCGGAALDV---FCEEPPKS  222 (333)
Q Consensus       157 ~l~~P~t~~------t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~a-L~~--g~i~gaalDV---~~~EP~~~  222 (333)
                      ++|+|....      ...+.  -....+.+++|.++|+++.-.+-..+.+... +++  |.-  .+.|+   +.+|....
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~--~~~d~~v~~~Pe~~~~  158 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLK--LGEDFYLAYNPEFLRE  158 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCC--CCCCceEEECCCcCCC
Confidence            999995432      11222  2445677899999999997766666777644 343  211  12332   23443221


Q ss_pred             c-cchhhcCCCcEEEc
Q psy6348         223 E-QTFELIKHPKVIVT  237 (333)
Q Consensus       223 ~-~~~~L~~~pnvi~T  237 (333)
                      . ..+.++..+.+++.
T Consensus       159 G~~~~~~~~~~~iv~G  174 (411)
T TIGR03026       159 GNAVHDLLNPDRIVGG  174 (411)
T ss_pred             CChhhhhcCCCEEEEe
Confidence            1 12345666677755

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.75  E-value=2e-07  Score=88.48  Aligned_cols=113  Identities=19%  Similarity=0.128  Sum_probs=79.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------cC-------------cccc-ChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------LN-------------IASL-GLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-------------v~~~-~l~ell~~  152 (333)
                      ++|+|||+|.||..+|..+...|++|++||+.... +.+.+           .|             ++.. +++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            68999999999999999999999999999987522 22110           12             1222 454 5789


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEE-EccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV-NVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI-N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      ||+|+.++|...+.+..+-++..+.++++++|+ |++.-.+   .++.+.+... -+..++..+.
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~-~r~~g~h~~~  144 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRP-ERFIGIHFMN  144 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCc-ccEEEeeccC
Confidence            999999999877766655567777889999998 5555443   3677776421 2224555555

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.71  E-value=4.4e-08  Score=93.36  Aligned_cols=80  Identities=21%  Similarity=0.238  Sum_probs=68.1

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||+++|||.| .||+.+|.+|...|++|.+|++...            ++.++.++||+|+++++..    +++.
T Consensus       154 ~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~----~~v~  217 (301)
T PRK14194        154 CGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRP----RLID  217 (301)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCCh----hccc
Confidence            568999999999996 9999999999999999999987532            6788899999999999854    3454


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      ...   +|+|+++||++-..
T Consensus       218 ~~~---ik~GaiVIDvgin~  234 (301)
T PRK14194        218 ADW---LKPGAVVIDVGINR  234 (301)
T ss_pred             Hhh---ccCCcEEEEecccc
Confidence            443   79999999998654

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.71  E-value=1.1e-07  Score=81.24  Aligned_cols=109  Identities=26%  Similarity=0.312  Sum_probs=79.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhcCc-----cccChhhhccCCCEEEEecCCchh
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKLNI-----ASLGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~gv-----~~~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      .++.+++++|+|+|.||+.+++.+...| .+|.++|++...  +.+++.+.     ...+++++++++|+|++++|....
T Consensus        15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~   94 (155)
T cd01065          15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK   94 (155)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence            3467899999999999999999999886 789999987532  22333343     234677888999999999996553


Q ss_pred             -hHh-hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         166 -TKN-LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       166 -t~~-li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                       ... .+..   ..++++.+++|++......  .+.+++++..+
T Consensus        95 ~~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~  133 (155)
T cd01065          95 PGDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARALGA  133 (155)
T ss_pred             CCCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence             122 2332   2368999999998765433  77777777644

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.71  E-value=3.3e-07  Score=86.59  Aligned_cols=114  Identities=18%  Similarity=0.134  Sum_probs=80.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH------------HHHhcC-------------cccc-ChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE------------DAAKLN-------------IASL-GLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------------~a~~~g-------------v~~~-~l~ell~~  152 (333)
                      ++|+|||+|.||..+|..+...|++|++||+.....            ...+.|             +... +++ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            589999999999999999999999999999865321            112223             1212 444 4789


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      ||+|++++|...+.+.-+-++..+.++++++|+..+.|  +....|.+.+... -+..++..+.
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~  143 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFN  143 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccC
Confidence            99999999977777765556677788999988655555  5555888877432 2234454444

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.71  E-value=9.3e-08  Score=90.29  Aligned_cols=104  Identities=9%  Similarity=0.127  Sum_probs=76.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCH--HH-HHhcCcccc-ChhhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSV--ED-AAKLNIASL-GLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~-a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .+++|||||+|+||+++|+.|...|    .+|++|||....  +. ....|+... +..+++++||+|++++|. .....
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p-~~~~~   80 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKP-KDVAE   80 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCH-HHHHH
Confidence            3468999999999999999999887    789999986522  22 234576544 678889999999999994 44445


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++ .+....++++.++|++.-|  +..+.+.+.+..
T Consensus        81 vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~~  113 (279)
T PRK07679         81 AL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQK  113 (279)
T ss_pred             HH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcCC
Confidence            44 4555667889999998655  355566665543

>KOG1370|consensus

Probab=98.69  E-value=4.4e-08  Score=92.33  Aligned_cols=93  Identities=25%  Similarity=0.297  Sum_probs=80.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      -+.||.+.|.|||.+|+..|+.|++||..|++..-.+ ..-.+...|++.++++|++++.|+++.++    ..+.+|..+
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~~~  286 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIITGE  286 (434)
T ss_pred             eecccEEEEeccCccchhHHHHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhhHH
Confidence            4689999999999999999999999999999974443 33345567899999999999999999865    568899999


Q ss_pred             HHhccCCCcEEEEccCCc
Q psy6348         174 VLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~  191 (333)
                      .|.+||+++++.|++.-.
T Consensus       287 H~~~mk~d~IvCN~Ghfd  304 (434)
T KOG1370|consen  287 HFDQMKNDAIVCNIGHFD  304 (434)
T ss_pred             HHHhCcCCcEEecccccc
Confidence            999999999999996644

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.69  E-value=3.4e-07  Score=97.42  Aligned_cols=137  Identities=22%  Similarity=0.261  Sum_probs=94.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCC-HHHHHhcCcc---ccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVS-VEDAAKLNIA---SLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~-~~~a~~~gv~---~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ++|+|||+|.||+.+|+.++..|  .+|++||+... .+.+.+.|+.   ..++++++.++|+|++++|.. ....++ +
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~   81 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A   81 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence            68999999999999999999988  58999999763 3445566763   236778899999999999953 444444 3


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC-------CccchhhcCCCcEEEccCCCC
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK-------SEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-------~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      +..+.++++.++++++.......+.+.+.+....++     +..+=|-.       ......|+...+++++|+-..
T Consensus        82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~~r-----~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~  153 (735)
T PRK14806         82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELPAG-----FVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAET  153 (735)
T ss_pred             HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccCCe-----EEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCC
Confidence            444567889999999886544455566555432222     22222211       001135788889999997654

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=98.67  E-value=1.7e-07  Score=85.94  Aligned_cols=115  Identities=20%  Similarity=0.251  Sum_probs=96.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhhh---ccCCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDI---WPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~el---l~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      +++|.||||+||..+.++|..-|++|++||..+ ..+.+...|.+.+ +++++   +..--+|-+++|..+.|..++ ++
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence            479999999999999999999999999999987 4456667776544 66766   456789999999887888877 55


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      .-.+|.+|-++|+-+....-|....++.|++..|.  .+||=.
T Consensus        80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~GT  120 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDVGT  120 (300)
T ss_pred             HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEeccC
Confidence            66789999999999999998988899999998884  677743

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.67  E-value=2e-07  Score=92.35  Aligned_cols=128  Identities=15%  Similarity=0.202  Sum_probs=86.9

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh----------------cCccc-c--ChhhhccCCCEEEEe
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK----------------LNIAS-L--GLEDIWPLADYITVH  159 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~----------------~gv~~-~--~l~ell~~aDvV~l~  159 (333)
                      +|+|||+|.||..+|..+. .|++|++||+.... +...+                .+... .  +..++.++||+|++|
T Consensus         2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~   80 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA   80 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence            7999999999999997666 59999999986533 22211                11222 1  356778999999999


Q ss_pred             cCCch----------hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC-ccchhh
Q psy6348         160 TPLIP----------QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS-EQTFEL  228 (333)
Q Consensus       160 ~P~t~----------~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~~~~L  228 (333)
                      +|...          ..+..+ +...+ +++|.++|+.|.-.+=..+.+.+.+.+..+.      |.+|.... ...+.+
T Consensus        81 Vpt~~~~k~~~~dl~~v~~v~-~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~------~~PE~l~~G~a~~d~  152 (388)
T PRK15057         81 TPTDYDPKTNYFNTSSVESVI-KDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENII------FSPEFLREGKALYDN  152 (388)
T ss_pred             CCCCCccCCCCcChHHHHHHH-HHHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEE------ECcccccCCcccccc
Confidence            99541          222222 33444 7999999999999998899998887654332      46665332 123456


Q ss_pred             cCCCcEEE
Q psy6348         229 IKHPKVIV  236 (333)
Q Consensus       229 ~~~pnvi~  236 (333)
                      +..|+|++
T Consensus       153 ~~p~rvv~  160 (388)
T PRK15057        153 LHPSRIVI  160 (388)
T ss_pred             cCCCEEEE
Confidence            66667763

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.67  E-value=5.4e-07  Score=85.66  Aligned_cols=115  Identities=17%  Similarity=0.100  Sum_probs=82.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-----------HHhcCc-------------ccc-ChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-----------AAKLNI-------------ASL-GLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~gv-------------~~~-~l~ell~~  152 (333)
                      ++|||||.|.||..+|..+...|++|+.||+.+.. +.           ..+.|.             +.. ++ +.+++
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999997632 22           122221             122 55 55799


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhcc-CCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKC-KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~m-k~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      ||+|+-++|.+.+.+..+-.+.-+.+ +++++|++.+.+-.+.+-+  .+++.. =+-.++..|.+
T Consensus        85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la--~~~~~~-~r~~g~hf~~P  147 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLA--AATKRP-GRVLGLHFFNP  147 (286)
T ss_pred             CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH--hhcCCC-ccEEEEecCCC
Confidence            99999999999998888766555555 8999999887775554444  444321 22356777664

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.67  E-value=1.4e-07  Score=91.03  Aligned_cols=101  Identities=23%  Similarity=0.234  Sum_probs=75.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--------C------cccc-ChhhhccCCCEEEEecC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--------N------IASL-GLEDIWPLADYITVHTP  161 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--------g------v~~~-~l~ell~~aDvV~l~~P  161 (333)
                      .++|+|||+|.||..+|.+|...|++|.+|++.... +.....        |      +... +++++++.+|+|++++|
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            358999999999999999999999999999996532 223222        3      2222 67788899999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCC-cccc--hHhHHhhhhc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARG-GIVD--ENALLDSLKC  204 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg-~~vd--~~aL~~aL~~  204 (333)
                      .. .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        84 ~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         84 SK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             hH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            54 22     5555778999999999997 4332  4456666644

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.67  E-value=4e-08  Score=82.53  Aligned_cols=107  Identities=23%  Similarity=0.311  Sum_probs=62.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEc-CCC-CHHHHHh-cC-ccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-PMV-SVEDAAK-LN-IASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d-~~~-~~~~a~~-~g-v~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ...+|||||.|++|..+++.|...|++|.++- ++. +.+.+.. .+ ....+++|+++++|++++++|+. ....+ .+
T Consensus         9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~v-a~   86 (127)
T PF10727_consen    9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEV-AE   86 (127)
T ss_dssp             ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHH-HH
T ss_pred             CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHH-HH
Confidence            34699999999999999999999999998864 433 2233322 22 33458899999999999999965 33333 34


Q ss_pred             HHHhc--cCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         173 EVLKK--CKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       173 ~~~~~--mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      ++-..  .++|.+++.||=  -..-+-|..+-+.|-+
T Consensus        87 ~La~~~~~~~g~iVvHtSG--a~~~~vL~p~~~~Ga~  121 (127)
T PF10727_consen   87 QLAQYGAWRPGQIVVHTSG--ALGSDVLAPARERGAI  121 (127)
T ss_dssp             HHHCC--S-TT-EEEES-S--S--GGGGHHHHHTT-E
T ss_pred             HHHHhccCCCCcEEEECCC--CChHHhhhhHHHCCCe
Confidence            44443  689999999942  2344444444445544

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.66  E-value=7.5e-07  Score=84.57  Aligned_cols=116  Identities=17%  Similarity=0.184  Sum_probs=81.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh--------------cCc-------------ccc-Chhhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK--------------LNI-------------ASL-GLEDI  149 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~--------------~gv-------------~~~-~l~el  149 (333)
                      ++|+|||.|.||..+|..+...|++|++||+.... +.+.+              .|.             ... ++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            68999999999999999999999999999987522 21110              011             111 33 56


Q ss_pred             ccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC
Q psy6348         150 WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE  218 (333)
Q Consensus       150 l~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E  218 (333)
                      +++||+|+.++|...+.+..+-++.-+.++++++|++.+.|  +....+.+.+... -+..++..|.+-
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~~-~r~ig~hf~~P~  148 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALERK-DRFIGMHWFNPA  148 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCCc-ccEEEEecCCCc
Confidence            78999999999977655555545565678999999877776  4566777777532 233566555543

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.66  E-value=4e-07  Score=92.87  Aligned_cols=104  Identities=22%  Similarity=0.252  Sum_probs=75.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHH-------------------hcC-cccc-ChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE-DAA-------------------KLN-IASL-GLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~-------------------~~g-v~~~-~l~ell~~aDvV  156 (333)
                      ++|||||+|.||.++|..+...|++|++||+..... ...                   ..| +... ++++++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            589999999999999999999999999999976321 111                   012 3333 688899999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      +.++|...+.+..+-.+.-+.++++++| .++..++- ...+.+.+..
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi~-~s~l~~~~~~  130 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGFL-PSDLQEGMTH  130 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCCC-HHHHHhhcCC
Confidence            9999988776775545555667888654 55555543 5577777654

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.66  E-value=7.1e-08  Score=94.92  Aligned_cols=148  Identities=16%  Similarity=0.192  Sum_probs=97.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-HhcCcc----c---cChhhhccCCCEEEEecCCc-hh
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-AKLNIA----S---LGLEDIWPLADYITVHTPLI-PQ  165 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~gv~----~---~~l~ell~~aDvV~l~~P~t-~~  165 (333)
                      +.++++.|+|+|.+|+.+++.++++|++|.++|++... +.+ ...+..    .   .++.+.++++|+|+.+++.+ ..
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence            57788999999999999999999999999999986532 222 223321    1   24677889999999998642 23


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCC--CcEEEccCCCC-
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH--PKVIVTPHLGA-  242 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~--pnvi~TPHi~~-  242 (333)
                      +..+++++.++.||+++++||++-..            -|.+-       ...|...+  .|.+..  -.+++-||+.+ 
T Consensus       245 ~p~lit~~~l~~mk~g~vIvDva~d~------------GG~~e-------~~~~t~~d--~p~~~~~Gv~~~~v~nlP~~  303 (370)
T TIGR00518       245 APKLVSNSLVAQMKPGAVIVDVAIDQ------------GGCVE-------TSRPTTHD--QPTYAVHDVVHYCVANMPGA  303 (370)
T ss_pred             CCcCcCHHHHhcCCCCCEEEEEecCC------------CCCcc-------CCcCCCCC--CCEEEECCeEEEEeCCcccc
Confidence            45688999999999999999986210            11111       01122111  123222  34566778865 


Q ss_pred             CcHHHHHHHHHHHHHHHHHhHc
Q psy6348         243 STKEAQIRVAVEIAEQFIALAN  264 (333)
Q Consensus       243 ~t~ea~~~~~~~~~~~i~~~~~  264 (333)
                      ...++....+..+..-+..+..
T Consensus       304 ~p~~aS~~~~~~l~~~l~~~~~  325 (370)
T TIGR00518       304 VPKTSTYALTNATMPYVLELAN  325 (370)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh
Confidence            4555666666666666666544

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.64  E-value=1.2e-07  Score=89.58  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=78.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh--CCCEEE-EEcCCCCH--HHHHhcCc-c-ccChhhhccCCCEEEEecCCchhhHhh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA--FGMKVI-GFDPMVSV--EDAAKLNI-A-SLGLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~~--~~a~~~gv-~-~~~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      ...+|||||+|+||+.+++.+..  .++++. +||+....  +.+.++|. . +.++++++.++|+|++|+|....  .-
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~~h--~e   82 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPASVL--RA   82 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcHHH--HH
Confidence            34799999999999999999986  488876 67886532  23344553 2 34899999999999999995332  22


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +.   .+.++.|.-++..+.|.+.+.++|.++.+++...
T Consensus        83 ~~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         83 IV---EPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             HH---HHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            22   3335677777778899888889999988886543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.64  E-value=3.8e-07  Score=87.40  Aligned_cols=104  Identities=22%  Similarity=0.236  Sum_probs=71.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcCc-------------cc-cChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLNI-------------AS-LGLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~gv-------------~~-~~l~ell~~  152 (333)
                      ++|+|||+|.||.++|..+...|++|++||+.... +.+           .+.|.             .. .++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            47999999999999999999999999999997522 211           12332             22 378888999


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ||+|+.++|...+.+..+-.+.-+..+++.++. .+.. ......+.+.+..
T Consensus        83 ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~-ssts-~~~~~~la~~~~~  132 (308)
T PRK06129         83 ADYVQESAPENLELKRALFAELDALAPPHAILA-SSTS-ALLASAFTEHLAG  132 (308)
T ss_pred             CCEEEECCcCCHHHHHHHHHHHHHhCCCcceEE-EeCC-CCCHHHHHHhcCC
Confidence            999999999765555544344333445555554 3333 3446667777754

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.64  E-value=1.9e-07  Score=89.32  Aligned_cols=88  Identities=11%  Similarity=0.125  Sum_probs=72.4

Q ss_pred             HHHHHHHHhhCCCEEEEEcCCCCH------HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCc
Q psy6348         110 GREVALRMQAFGMKVIGFDPMVSV------EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGV  182 (333)
Q Consensus       110 G~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ga  182 (333)
                      |+.||++|...|++|++||++.+.      +...+.|+..+ +..+++++||+|++|+|..+.++.++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            889999999999999999986531      23566787766 68899999999999999888888887 56889999999


Q ss_pred             EEEEccCCcccchHhH
Q psy6348         183 RVVNVARGGIVDENAL  198 (333)
Q Consensus       183 ilIN~aRg~~vd~~aL  198 (333)
                      ++||+++.++...-..
T Consensus       111 IVID~STIsP~t~~~~  126 (341)
T TIGR01724       111 VICNTCTVSPVVLYYS  126 (341)
T ss_pred             EEEECCCCCHHHHHHH
Confidence            9999988765444443

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.63  E-value=1.9e-07  Score=95.51  Aligned_cols=115  Identities=22%  Similarity=0.259  Sum_probs=85.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-ChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~~  152 (333)
                      ++|||||+|.||+.+|..+...|++|+.||+.... +.+           .+.|             +... ++++ +++
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            68999999999999999999999999999997632 221           2234             2222 5655 569


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEE-EEccCCcccchHhHHhhhhc-CCceEEEeccCCCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRV-VNVARGGIVDENALLDSLKC-GHCGGAALDVFCEEP  219 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gail-IN~aRg~~vd~~aL~~aL~~-g~i~gaalDV~~~EP  219 (333)
                      ||+|+-++|...+.+..+-.+.-..++++++| .|+|.-.+-   ++..+++. .++  .++..|.+-|
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~--~G~hff~Pa~  150 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERV--AGLHFFNPVP  150 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccE--EEEeecCCcc
Confidence            99999999999998888766665667899999 589887763   56666653 233  5677777544

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.63  E-value=1.3e-07  Score=90.33  Aligned_cols=91  Identities=20%  Similarity=0.238  Sum_probs=69.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--------------Ccccc-ChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--------------NIASL-GLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--------------gv~~~-~l~ell~~aDvV~l~~P~  162 (333)
                      ++|+|||+|.||..+|.+|...|++|.+||+.... +...+.              ++... ++++.++++|+|++++|.
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            47999999999999999999999999999996522 323332              23222 677788999999999995


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                       ..+..++ .+..+.++++.++|+++.|-
T Consensus        82 -~~~~~v~-~~l~~~~~~~~~vi~~~ngv  108 (325)
T PRK00094         82 -QALREVL-KQLKPLLPPDAPIVWATKGI  108 (325)
T ss_pred             -HHHHHHH-HHHHhhcCCCCEEEEEeecc
Confidence             5566666 35556678999999997653

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.61  E-value=3.9e-07  Score=93.12  Aligned_cols=116  Identities=20%  Similarity=0.224  Sum_probs=84.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-----------HHhcC-------------cccc-ChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-----------AAKLN-------------IASL-GLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-----------a~~~g-------------v~~~-~l~ell~~  152 (333)
                      ++|||||+|.||+.+|..+...|++|+.||+.... +.           ..+.|             ++.. ++++ +++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            58999999999999999999999999999987532 21           12223             1122 5655 569


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEE-EccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV-NVARGGIVDENALLDSLKCGHCGGAALDVFCEEP  219 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI-N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP  219 (333)
                      ||+|+.++|...+.+..+-.+.-+.++++++|. |+|.-.+   ..+.++++. .-+..++..|.+-|
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~-p~r~~G~HFf~Pap  148 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLAR-PERVAGLHFFNPAP  148 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCc-ccceEEEeccCccc
Confidence            999999999988888877666667788888876 6655554   456676643 33457788887655

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=98.58  E-value=1.8e-07  Score=88.39  Aligned_cols=94  Identities=27%  Similarity=0.296  Sum_probs=77.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      -|+||||+|||||.-|..-|..|+..|.+|++=-+.-  +.+.+++.|++..+.+|+.++||+|.+.+|+. ....++..
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe-~q~~vy~~   93 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDE-QQKEVYEK   93 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchh-hHHHHHHH
Confidence            5899999999999999999999999999987643332  46788899999999999999999999999953 34556666


Q ss_pred             HHHhccCCCcEEEEccCC
Q psy6348         173 EVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg  190 (333)
                      +.-..||+|+.|. .|.|
T Consensus        94 ~I~p~Lk~G~aL~-FaHG  110 (338)
T COG0059          94 EIAPNLKEGAALG-FAHG  110 (338)
T ss_pred             HhhhhhcCCceEE-eccc
Confidence            7888899998553 4443

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=4.1e-07  Score=86.94  Aligned_cols=104  Identities=23%  Similarity=0.288  Sum_probs=71.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----cC--------------ccc-cChhhhccCCCEEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----LN--------------IAS-LGLEDIWPLADYIT  157 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~g--------------v~~-~~l~ell~~aDvV~  157 (333)
                      ++|+|||+|.||..+|..+...|++|++||+.... +...+     .+              +.. .++++++++||+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            58999999999999999999999999999986522 22211     12              122 25777889999999


Q ss_pred             EecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      +++|...+.+.-+-.+.-..++++++++..+.|  +....+.+.+..
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~~  129 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG--LPITAIAQAVTR  129 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC--CCHHHHHhhcCC
Confidence            999976543333334443456777776544444  235577777653

>PRK07680 late competence protein ComER; Validated

Probab=98.52  E-value=5.8e-07  Score=84.56  Aligned_cols=100  Identities=11%  Similarity=0.147  Sum_probs=74.1

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC----EEEEEcCCCCH-HHH-Hhc-Ccccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM----KVIGFDPMVSV-EDA-AKL-NIASL-GLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a-~~~-gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +|||||+|.||+.+++.|...|.    +|.+|||+... +.. .+. |+... +..+++.++|+|++++| ......++ 
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl-   79 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL-   79 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence            69999999999999999988883    79999997522 222 222 55543 67788899999999998 34455555 


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLK  203 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~  203 (333)
                      ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        80 ~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         80 QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            4455667888999999854  36777776665

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.50  E-value=4.2e-07  Score=86.69  Aligned_cols=80  Identities=20%  Similarity=0.227  Sum_probs=66.6

Q ss_pred             ccccCCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEc-CCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          93 GTELYGKTLAVLG-LGRIGREVALRMQAFGMKVIGFD-PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        93 g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d-~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      +.++.||+++||| .|.||+.+|.+|...|+.|.+|+ ++.             ++++++++||+|+.+++...    ++
T Consensus       153 ~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~-------------~l~e~~~~ADIVIsavg~~~----~v  215 (296)
T PRK14188        153 HGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR-------------DLPAVCRRADILVAAVGRPE----MV  215 (296)
T ss_pred             CCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC-------------CHHHHHhcCCEEEEecCChh----hc
Confidence            4578999999999 99999999999999999999996 432             46888999999999998643    44


Q ss_pred             cHHHHhccCCCcEEEEccCCcc
Q psy6348         171 NAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~~  192 (333)
                      ....   +|+|+++||++-..+
T Consensus       216 ~~~~---lk~GavVIDvGin~~  234 (296)
T PRK14188        216 KGDW---IKPGATVIDVGINRI  234 (296)
T ss_pred             chhe---ecCCCEEEEcCCccc
Confidence            4433   899999999986543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.50  E-value=8.7e-07  Score=78.68  Aligned_cols=113  Identities=22%  Similarity=0.244  Sum_probs=77.3

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH----Hh-------cC-------------ccc-cChhhhccCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA----AK-------LN-------------IAS-LGLEDIWPLA  153 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a----~~-------~g-------------v~~-~~l~ell~~a  153 (333)
                      +|+|||.|.||+.+|..+...|++|..||+.... +.+    ++       .|             +.+ .+++++. +|
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            6999999999999999999999999999997632 111    11       11             112 2688888 99


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      |+|+=++|...+.+.-+-++.-+.++++++|...+.+  +...+|...+. ..-+-.++-.|.
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~  139 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFN  139 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-S
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEeccc
Confidence            9999999988888887778877888999998877554  55666777764 333346777674

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.49  E-value=5.2e-07  Score=84.12  Aligned_cols=100  Identities=14%  Similarity=0.223  Sum_probs=73.2

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCE---EEEEcCCCCH-HHH-Hhc-Ccccc-ChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMK---VIGFDPMVSV-EDA-AKL-NIASL-GLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~---V~~~d~~~~~-~~a-~~~-gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      +|||||+|+||+.+++.|...|..   +.+|++.... +.. ... ++... +.+++++++|+|++++| ......++..
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~   80 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA   80 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence            799999999999999999887753   5788886532 222 223 35443 78888999999999999 4455555532


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                        + .++++.++|.++  .-+..+.|.+.+..+
T Consensus        81 --l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         81 --L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             --h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence              2 257889999987  347888888887654

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.48  E-value=5.1e-07  Score=79.42  Aligned_cols=90  Identities=23%  Similarity=0.297  Sum_probs=74.1

Q ss_pred             cccCCCEEEEEecChH-HHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          94 TELYGKTLAVLGLGRI-GREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        94 ~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ..+.||++.|||.|.+ |..+|+.|...|.+|+.++++.            .++.+.+++||+|+.+++..    +++..
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~  103 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG  103 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence            4689999999999996 8889999999999999999852            24678899999999999742    26777


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceE
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGG  209 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~g  209 (333)
                      +.   ++++.++||++....+|       ..+|++.|
T Consensus       104 ~~---~~~~~viIDla~prdvd-------~~~~~~~G  130 (168)
T cd01080         104 DM---VKPGAVVIDVGINRVPD-------KSGGKLVG  130 (168)
T ss_pred             HH---ccCCeEEEEccCCCccc-------ccCCCeeC
Confidence            75   58899999999988777       45566654

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.46  E-value=6.1e-07  Score=77.74  Aligned_cols=90  Identities=22%  Similarity=0.325  Sum_probs=63.4

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcC--------c------cc-cChhhhccCCCEEEEecCCc
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLN--------I------AS-LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g--------v------~~-~~l~ell~~aDvV~l~~P~t  163 (333)
                      ||+|+|.|++|.++|..|...|.+|..|++.... +...+.+        .      .. .+++++++++|+|++++|. 
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-   79 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-   79 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-
Confidence            6899999999999999999999999999996521 2222111        1      11 2688999999999999994 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      ...+.++ ++....++++..+|++..|=
T Consensus        80 ~~~~~~~-~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   80 QAHREVL-EQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             GGHHHHH-HHHTTTSHTT-EEEETS-SE
T ss_pred             HHHHHHH-HHHhhccCCCCEEEEecCCc
Confidence            3334443 56667788999999998763

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=98.45  E-value=1.2e-06  Score=84.57  Aligned_cols=107  Identities=20%  Similarity=0.201  Sum_probs=76.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-----------------cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-----------------LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-----------------~~l~ell~~aDvV~l~~P  161 (333)
                      ++|+|||.|.||+.+|..|...|++|.+||+....+...+.|...                 .+..+.++.+|+|++++|
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk   82 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTVK   82 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEec
Confidence            579999999999999999999999999999854333334444321                 122256789999999998


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      . +.....+ +...+.++++.++|.+.- ++-..+.+.+.+...++.
T Consensus        83 ~-~~~~~~~-~~l~~~~~~~~iii~~~n-G~~~~~~l~~~~~~~~~~  126 (341)
T PRK08229         83 S-AATADAA-AALAGHARPGAVVVSFQN-GVRNADVLRAALPGATVL  126 (341)
T ss_pred             C-cchHHHH-HHHHhhCCCCCEEEEeCC-CCCcHHHHHHhCCCCcEE
Confidence            5 4445554 455667789999998854 455566677777665543

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.44  E-value=5.8e-07  Score=85.21  Aligned_cols=81  Identities=23%  Similarity=0.299  Sum_probs=68.8

Q ss_pred             ccccCCCEEEEEecChH-HHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGRI-GREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|.+ |+.+|..|...|+.|+.++...            .++.+.+++||+|+.++|    +.++++
T Consensus       153 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i~  216 (285)
T PRK14189        153 GIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVLT  216 (285)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCccC
Confidence            56799999999999998 9999999999999999886531            257889999999999998    356787


Q ss_pred             HHHHhccCCCcEEEEccCCcc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~  192 (333)
                      .   +.+|+|+++||++...+
T Consensus       217 ~---~~ik~gavVIDVGin~~  234 (285)
T PRK14189        217 A---DMVKPGATVIDVGMNRD  234 (285)
T ss_pred             H---HHcCCCCEEEEcccccc
Confidence            7   45799999999986553

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.40  E-value=8.2e-07  Score=84.16  Aligned_cols=80  Identities=23%  Similarity=0.255  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||+++|||. |.||+.+|.+|...|+.|..|....            .++.+..++||+|+.+++..    +++.
T Consensus       153 ~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~----~~v~  216 (284)
T PRK14179        153 NVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRG----HFVT  216 (284)
T ss_pred             CCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCcc----ccCC
Confidence            56899999999999 9999999999999999999995321            15788899999999999853    3455


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      ...   +|+|+++||++-..
T Consensus       217 ~~~---ik~GavVIDvgin~  233 (284)
T PRK14179        217 KEF---VKEGAVVIDVGMNR  233 (284)
T ss_pred             HHH---ccCCcEEEEeccee
Confidence            443   89999999997554

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.40  E-value=2.4e-06  Score=80.75  Aligned_cols=101  Identities=16%  Similarity=0.229  Sum_probs=73.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCH--HHH-Hhc-Cccc-cChhhhccCCCEEEEecCCchhhHhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSV--EDA-AKL-NIAS-LGLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a-~~~-gv~~-~~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      .+|+|||+|+||+.+++.+...|    .+|++|+++...  +.. ... ++.. .+.+++++++|+|++++| ......+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v   80 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL   80 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence            47999999999999999998887    689999986422  111 222 2332 367788999999999999 3344444


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLK  203 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~  203 (333)
                      + .+....++++..+|.+.-|  +..+.|.+.+.
T Consensus        81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            4 3444557788899999888  67778888764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.38  E-value=6e-07  Score=75.92  Aligned_cols=97  Identities=31%  Similarity=0.397  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCCCH--HHHHhc---Ccccc---ChhhhccCCCEEEEecCCchh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMVSV--EDAAKL---NIASL---GLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~--~~a~~~---gv~~~---~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ++.|+++.|||.|.+|+.++..|...|++ |+.++|+...  +.++..   .+...   ++.+.+.++|+|+.++|....
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            68999999999999999999999999996 9999997532  223333   23333   455667999999999985432


Q ss_pred             hHhhccHHHHhccCCCc-EEEEccCCcccc
Q psy6348         166 TKNLINAEVLKKCKKGV-RVVNVARGGIVD  194 (333)
Q Consensus       166 t~~li~~~~~~~mk~ga-ilIN~aRg~~vd  194 (333)
                         .+.++.++..++.. ++++.+...-++
T Consensus        89 ---~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   89 ---IITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             ---SSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             ---ccCHHHHHHHHhhhhceeccccCCCCC
Confidence               67777776555433 888887655444

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=98.38  E-value=1.4e-06  Score=87.98  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             HHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-c----Ccccc-ChhhhccC---CCEEEEecCCchhhHhhccHHHHhcc
Q psy6348         109 IGREVALRMQAFGMKVIGFDPMVSV-EDAAK-L----NIASL-GLEDIWPL---ADYITVHTPLIPQTKNLINAEVLKKC  178 (333)
Q Consensus       109 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~----gv~~~-~l~ell~~---aDvV~l~~P~t~~t~~li~~~~~~~m  178 (333)
                      ||+.||++|...|++|.+||++.+. +...+ .    |+..+ +++++++.   +|+|++++|..+.+..++ ...++.|
T Consensus         1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l   79 (459)
T PRK09287          1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL   79 (459)
T ss_pred             CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence            7999999999999999999998733 33333 2    35443 78888764   899999999999999998 5688999


Q ss_pred             CCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC
Q psy6348         179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE  218 (333)
Q Consensus       179 k~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E  218 (333)
                      .+|.++||++....-+...+.+.+++..+.....=|...+
T Consensus        80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~  119 (459)
T PRK09287         80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGE  119 (459)
T ss_pred             CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCH
Confidence            9999999999999999999999999888864444455444

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.37  E-value=1.7e-06  Score=80.84  Aligned_cols=99  Identities=18%  Similarity=0.194  Sum_probs=70.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC---CEEEEEcCCCC-HHHHHh-cCcccc-ChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG---MKVIGFDPMVS-VEDAAK-LNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~-~~~a~~-~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ++|+|||+|.||+.+++.+...|   .+|.+||++.. .+...+ +|+... +.++++.++|+|++++|. ...+.++ +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~-~   80 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVL-S   80 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHH-H
Confidence            58999999999999999999888   78999999752 223333 366543 677888999999999983 3344444 2


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLK  203 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~  203 (333)
                      +....+  +..+|++.-|-  ..+.+.+.+.
T Consensus        81 ~l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         81 ELKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             HHHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            233333  46888886653  5666776665

>KOG2380|consensus

Probab=98.31  E-value=8.8e-06  Score=78.11  Aligned_cols=139  Identities=17%  Similarity=0.187  Sum_probs=98.9

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-Chhhhcc-CCCEEEEecCCchhhHhhccHHHH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWP-LADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~-~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      -++|||||+|++|+-+|+.+...|+.|+.+||..-...++.+|.... .+.++++ ..|+|++|+. -..+..++..--+
T Consensus        52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatypf  130 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYPF  130 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcCc
Confidence            35899999999999999999999999999999765556677887654 5777775 5999999986 3455566555567


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~  241 (333)
                      +++|.|++++++-.-.....+++.+-|-+.--.-..=-.|.++. ..   +....+|=|+.--.+|
T Consensus       131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIlctHpmfGPks-vn---h~wqglpfVydkvRig  192 (480)
T KOG2380|consen  131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDILCTHPMFGPKS-VN---HEWQGLPFVYDKVRIG  192 (480)
T ss_pred             hhhccceeEeeeeecchhHHHHHHHhCccccceEeecCCcCCCc-CC---CccccCceEEEEeecc
Confidence            78999999999988888888888887755422112222333331 11   2344566666655554

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=98.31  E-value=4.1e-06  Score=81.65  Aligned_cols=93  Identities=15%  Similarity=0.172  Sum_probs=73.5

Q ss_pred             HHHHHHHHhhCCCEEEEEcCCCC------HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCc
Q psy6348         110 GREVALRMQAFGMKVIGFDPMVS------VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGV  182 (333)
Q Consensus       110 G~~vA~~l~~~G~~V~~~d~~~~------~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ga  182 (333)
                      |..+|.+|...|++|++||++..      .+.....|+... +..+++++||+|++++|....++.++ ......+++++
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            78999999999999999998653      123445677654 67788999999999999655477777 46778899999


Q ss_pred             EEEEccCCcccch-HhHHhhhh
Q psy6348         183 RVVNVARGGIVDE-NALLDSLK  203 (333)
Q Consensus       183 ilIN~aRg~~vd~-~aL~~aL~  203 (333)
                      ++||++.+..... +.+.+.+.
T Consensus       111 IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        111 VICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             EEEEecCCCHHHHHHHHHHHhc
Confidence            9999999987766 56666664

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.30  E-value=3.6e-06  Score=76.17  Aligned_cols=89  Identities=27%  Similarity=0.329  Sum_probs=66.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHhcCc--cccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---EDAAKLNI--ASLGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~gv--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      ++++|+|.|+||+.+|+++...|++|+.-.++.+.   ..++.++.  +..+.++..+.+|+|++++|.. ....++ ++
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~-a~~~v~-~~   79 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFE-AIPDVL-AE   79 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHH-HHHhHH-HH
Confidence            68999999999999999999999999988665432   12233333  3347899999999999999963 333332 55


Q ss_pred             HHhccCCCcEEEEccCC
Q psy6348         174 VLKKCKKGVRVVNVARG  190 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg  190 (333)
                      ....+. |.++|++.-.
T Consensus        80 l~~~~~-~KIvID~tnp   95 (211)
T COG2085          80 LRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHHhC-CeEEEecCCC
Confidence            555555 8999998654

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.30  E-value=5.8e-06  Score=76.11  Aligned_cols=104  Identities=19%  Similarity=0.253  Sum_probs=70.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCC---CE-EEEEcCCC-C-HH-HHHhcCccc-cChhhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFG---MK-VIGFDPMV-S-VE-DAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G---~~-V~~~d~~~-~-~~-~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      ..++|||||.|+||+.++..+...|   .+ ++++++.. . .+ .....++.. .+++++++++|+|++++|.. ..+.
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~-~~~~   81 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPS-AHEE   81 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHH-HHHH
Confidence            3578999999999999999987665   33 77787642 1 22 223356654 36888999999999999943 3344


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      ++ ++.-..++ +.++|+++-|  ++.+.|.+.+..+
T Consensus        82 v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         82 LL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             HH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            43 22223344 6799999777  5666677777554

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=98.30  E-value=7.5e-06  Score=80.13  Aligned_cols=144  Identities=22%  Similarity=0.253  Sum_probs=96.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--------------------HhcC-ccccChhhhccCCCEEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--------------------AKLN-IASLGLEDIWPLADYIT  157 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--------------------~~~g-v~~~~l~ell~~aDvV~  157 (333)
                      .+|||||||-||..+|..+...|++|+|||-....-..                    .+.| ++..+--+.++.||+++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i   89 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI   89 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence            69999999999999999999999999999965422111                    1112 12222223456999999


Q ss_pred             EecCCchhhHh-------hc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC--CceEEEeccC---CCCC-CCC
Q psy6348         158 VHTPLIPQTKN-------LI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG--HCGGAALDVF---CEEP-PKS  222 (333)
Q Consensus       158 l~~P~t~~t~~-------li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g--~i~gaalDV~---~~EP-~~~  222 (333)
                      +|+| ||-+..       +.  .+..-+.||+|.++|==|.-.+=.++.++.-|.+.  .+. ..-|++   .+|- .+.
T Consensus        90 I~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~-~~~Df~laysPERv~PG  167 (436)
T COG0677          90 ICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLK-FGEDFYLAYSPERVLPG  167 (436)
T ss_pred             EEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCc-ccceeeEeeCccccCCC
Confidence            9999 453331       11  13456779999999999998888888888877664  333 345653   4553 122


Q ss_pred             ccchhhcCCCcEEEccCCCCCcHHHHH
Q psy6348         223 EQTFELIKHPKVIVTPHLGASTKEAQI  249 (333)
Q Consensus       223 ~~~~~L~~~pnvi~TPHi~~~t~ea~~  249 (333)
                      ...+.+.+.|+|     +||.|++..+
T Consensus       168 ~~~~el~~~~kV-----IgG~tp~~~e  189 (436)
T COG0677         168 NVLKELVNNPKV-----IGGVTPKCAE  189 (436)
T ss_pred             chhhhhhcCCce-----eecCCHHHHH
Confidence            223567788888     4888876543

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=98.29  E-value=1.4e-06  Score=77.69  Aligned_cols=138  Identities=19%  Similarity=0.207  Sum_probs=78.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC---------------------ccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN---------------------IAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------v~~-~~l~ell~~aDvV  156 (333)
                      ++|+|||+|.+|..+|..+...|++|++||.....-.....|                     +.. .+.++.+++||++
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~   80 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV   80 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence            589999999999999999999999999999754221111111                     112 2567778999999


Q ss_pred             EEecCCchhhHh------hc--cHHHHhccCCCcEEEEccCCcccchHhHH-hhhhcCCceEEEec-cCCCCCCC-Cccc
Q psy6348         157 TVHTPLIPQTKN------LI--NAEVLKKCKKGVRVVNVARGGIVDENALL-DSLKCGHCGGAALD-VFCEEPPK-SEQT  225 (333)
Q Consensus       157 ~l~~P~t~~t~~------li--~~~~~~~mk~gailIN~aRg~~vd~~aL~-~aL~~g~i~gaalD-V~~~EP~~-~~~~  225 (333)
                      ++|+|......+      +.  -+...+.++++.++|.-|.-.+=..+.+. ..|++..-.+.-++ +|.+|=.. ....
T Consensus        81 ~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~  160 (185)
T PF03721_consen   81 FICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAI  160 (185)
T ss_dssp             EE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHH
T ss_pred             EEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcc
Confidence            999983322222      21  24556778999999999998887777433 44443221110111 14555322 1123


Q ss_pred             hhhcCCCcEEE
Q psy6348         226 FELIKHPKVIV  236 (333)
Q Consensus       226 ~~L~~~pnvi~  236 (333)
                      ..+.+.|+|+.
T Consensus       161 ~d~~~~~rvV~  171 (185)
T PF03721_consen  161 EDFRNPPRVVG  171 (185)
T ss_dssp             HHHHSSSEEEE
T ss_pred             hhccCCCEEEE
Confidence            56788889873

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.29  E-value=5.1e-07  Score=82.12  Aligned_cols=130  Identities=16%  Similarity=0.132  Sum_probs=90.0

Q ss_pred             hHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHH--hhCCCEEEE-EcCCCCH
Q psy6348          57 ISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRM--QAFGMKVIG-FDPMVSV  133 (333)
Q Consensus        57 ~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l--~~~G~~V~~-~d~~~~~  133 (333)
                      ...++|.+..++...|++...         .         ..++++|||+|.+|+.+++.+  ...|+++++ +|+.+..
T Consensus        61 ~~~~gy~v~~l~~~~~~~l~~---------~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~  122 (213)
T PRK05472         61 KRGVGYNVEELLEFIEKILGL---------D---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEK  122 (213)
T ss_pred             CCCCCeeHHHHHHHHHHHhCC---------C---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhh
Confidence            455678888888888776521         1         235899999999999999853  467899887 4664322


Q ss_pred             HHHHhcCcc---ccChhhhccC--CCEEEEecCCchh---hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         134 EDAAKLNIA---SLGLEDIWPL--ADYITVHTPLIPQ---TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       134 ~~a~~~gv~---~~~l~ell~~--aDvV~l~~P~t~~---t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ....-.|+.   ..++++++++  .|.+++++|....   ...+.......-|...++.+|+.+|-+|+..+|..+|..
T Consensus       123 ~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~  201 (213)
T PRK05472        123 IGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT  201 (213)
T ss_pred             cCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence            110111221   1257777754  9999999997664   222333334455677789999999999999999999874

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.27  E-value=5.5e-06  Score=64.53  Aligned_cols=67  Identities=33%  Similarity=0.469  Sum_probs=56.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhC-CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAF-GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ..+.+++++|+|.|.+|+.++..+... +.+|.+||+                        |+++.++|.    .+.+.+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~----~~~~~~   70 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPA----GVPVLE   70 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCC----CCCchH
Confidence            458899999999999999999999998 678999988                        999999874    344555


Q ss_pred             HHHhccCCCcEEEEcc
Q psy6348         173 EVLKKCKKGVRVVNVA  188 (333)
Q Consensus       173 ~~~~~mk~gailIN~a  188 (333)
                      +..+.+++++++++++
T Consensus        71 ~~~~~~~~~~~v~~~a   86 (86)
T cd05191          71 EATAKINEGAVVIDLA   86 (86)
T ss_pred             HHHHhcCCCCEEEecC
Confidence            5678899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.25  E-value=4e-06  Score=78.86  Aligned_cols=104  Identities=16%  Similarity=0.242  Sum_probs=69.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--CCEE-EEEcCCCCH--HHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--GMKV-IGFDPMVSV--EDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--G~~V-~~~d~~~~~--~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .++||||+|.||+.+++.+...  ++++ .+||+....  +.++..+... .++++++.++|+|++|+|.... .    +
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~~~-~----~   76 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVNAV-E----E   76 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChHHH-H----H
Confidence            4899999999999999988765  5664 468886532  2223445543 3799999999999999983221 1    1


Q ss_pred             HHHhccCCCcEEEEccCCcccch---HhHHhhhhcCCc
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDE---NALLDSLKCGHC  207 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~---~aL~~aL~~g~i  207 (333)
                      -....++.|.-++..+.|.+.|.   +.|.++.+++..
T Consensus        77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~  114 (265)
T PRK13304         77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC  114 (265)
T ss_pred             HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence            12233455666677777777653   456666666543

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=98.25  E-value=7.9e-06  Score=76.86  Aligned_cols=97  Identities=24%  Similarity=0.281  Sum_probs=75.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCH--HHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSV--EDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~--~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      ++|||||+|+||++++..+...|    -+|++.+|....  ..+.++|+.. .+.+++..++|+|++++.  |..    -
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq~----~   75 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQD----L   75 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hHh----H
Confidence            58999999999999999999888    589999997633  2456777763 367789999999999996  321    2


Q ss_pred             HHHHhccC---CCcEEEEccCCcccchHhHHhhhh
Q psy6348         172 AEVLKKCK---KGVRVVNVARGGIVDENALLDSLK  203 (333)
Q Consensus       172 ~~~~~~mk---~gailIN~aRg~~vd~~aL~~aL~  203 (333)
                      .+.++.++   ++.++|.++-|  +..+.|.+++.
T Consensus        76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            44445554   79999999888  67778888876

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=98.25  E-value=4.8e-06  Score=75.90  Aligned_cols=91  Identities=21%  Similarity=0.202  Sum_probs=63.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHh--------cCc----cccChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVE-DAAK--------LNI----ASLGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~--------~gv----~~~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ++|+||| .|+||+.+|+.|...|.+|.+|++..... ...+        .|+    ...+..+.++++|+|++++|. .
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~   79 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-D   79 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-H
Confidence            3799997 89999999999999999999999865221 1111        122    123567788999999999994 3


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      ....++ ++.-..++ +.++|+++-|--
T Consensus        80 ~~~~~l-~~l~~~l~-~~vvI~~~ngi~  105 (219)
T TIGR01915        80 HVLKTL-ESLRDELS-GKLVISPVVPLA  105 (219)
T ss_pred             HHHHHH-HHHHHhcc-CCEEEEeccCce
Confidence            344444 22223344 589999977743

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=4e-06  Score=79.60  Aligned_cols=80  Identities=20%  Similarity=0.264  Sum_probs=67.9

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|. +|+.+|..|...|++|+.++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       153 ~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i~  216 (286)
T PRK14175        153 DIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLVT  216 (286)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----CcccC
Confidence            4579999999999998 99999999999999999998742            2578889999999999984    34677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   +|+|+++||++-..
T Consensus       217 ~~~---vk~gavVIDvGi~~  233 (286)
T PRK14175        217 KDV---VKEGAVIIDVGNTP  233 (286)
T ss_pred             HHH---cCCCcEEEEcCCCc
Confidence            654   69999999998654

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.22  E-value=4.3e-06  Score=85.25  Aligned_cols=93  Identities=23%  Similarity=0.280  Sum_probs=73.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc--C--------------------------h
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL--G--------------------------L  146 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~--~--------------------------l  146 (333)
                      +.+.++.|+|+|.+|...+..++.+|.+|+++|++. ..+.++.+|.+.+  +                          +
T Consensus       162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHH
Confidence            457899999999999999999999999999999876 4456666776542  1                          3


Q ss_pred             hhhccCCCEEEEec--CCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         147 EDIWPLADYITVHT--PLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       147 ~ell~~aDvV~l~~--P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      .+.++++|+|+.++  |..+ .-.++.++.++.||+|+++||++-
T Consensus       242 ~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEeee
Confidence            45578899998877  3211 235788999999999999999964

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.21  E-value=3.4e-06  Score=84.32  Aligned_cols=97  Identities=22%  Similarity=0.268  Sum_probs=71.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhcCccc---cChhhhccCCCEEEEecCCchhhHh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKLNIAS---LGLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .+.|++++|||.|.||+.+++.|+..| .+|+++++....  +.+++.|...   .++.+.+.++|+|+.+++   .+..
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~---s~~~  253 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTG---APHP  253 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCC---CCCc
Confidence            378899999999999999999999999 789999997633  2444455332   256778899999999976   4456


Q ss_pred             hccHHHHhccC----CCcEEEEccCCcccc
Q psy6348         169 LINAEVLKKCK----KGVRVVNVARGGIVD  194 (333)
Q Consensus       169 li~~~~~~~mk----~gailIN~aRg~~vd  194 (333)
                      +++.+.++.+.    ...+++|.+...=+|
T Consensus       254 ii~~e~l~~~~~~~~~~~~viDla~Prdid  283 (417)
T TIGR01035       254 IVSKEDVERALRERTRPLFIIDIAVPRDVD  283 (417)
T ss_pred             eEcHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence            77877776542    234777876544344

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=98.20  E-value=1.7e-05  Score=75.05  Aligned_cols=107  Identities=13%  Similarity=0.112  Sum_probs=74.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-----------c-ChhhhccCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-----------L-GLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-----------~-~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ++|+|||.|.||+.+|..|...|.+|..+++.. ..+...+.|+..           . +.+++ +.+|+|++++|. .+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~   78 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ   78 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence            379999999999999999999999999999854 223344445421           1 34454 889999999994 34


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceE
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGG  209 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~g  209 (333)
                      +..++ +.....+.+++.+|.+.-| +-.++.+.+.+....+.+
T Consensus        79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~  120 (304)
T PRK06522         79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG  120 (304)
T ss_pred             HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence            45544 3444556778888887776 334566666666555543

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=98.20  E-value=6.8e-06  Score=79.03  Aligned_cols=93  Identities=24%  Similarity=0.246  Sum_probs=65.7

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCC--HHHHHhcCcccc---ChhhhccCCCEEEEecCCchhhHhh
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVS--VEDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--~~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      +.|++++|||.|.||+.+++.++..| .+|+++++...  .+.+.++|....   ++.+.+.++|+|+.++|... ...+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~  254 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI  254 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence            67999999999999999999999866 57999999763  244566665433   35677889999999999543 3222


Q ss_pred             ccHHHHhcc-CCCcEEEEccCC
Q psy6348         170 INAEVLKKC-KKGVRVVNVARG  190 (333)
Q Consensus       170 i~~~~~~~m-k~gailIN~aRg  190 (333)
                      + ...++.. +++.++||++..
T Consensus       255 ~-~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         255 V-ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             H-HHHHhhCCCCCeEEEEeCCC
Confidence            2 2223222 356777777643

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=98.19  E-value=1.3e-05  Score=75.99  Aligned_cols=107  Identities=14%  Similarity=0.105  Sum_probs=75.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--------------cChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--------------LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--------------~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ++|+|||.|.||..+|..|...|++|..|++....+...+.|...              .+.++..+.+|+|++++|. .
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-Y   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-c
Confidence            379999999999999999999999999999822233334444321              1345566889999999994 3


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      .+...+ ++....++++.++|.+.-| +-..+.+.+.+.+.++.
T Consensus        80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            444444 3444556778888877665 45567777777665554

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.18  E-value=4.1e-05  Score=70.47  Aligned_cols=151  Identities=19%  Similarity=0.149  Sum_probs=100.3

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCE---EEEEcCC----CCH---------HHHHhcCcc-c-cChhhhccCCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMK---VIGFDPM----VSV---------EDAAKLNIA-S-LGLEDIWPLAD  154 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~---V~~~d~~----~~~---------~~a~~~gv~-~-~~l~ell~~aD  154 (333)
                      +..+.++++.|+|.|.+|+.+|..|...|++   ++.+|++    ...         +.++..+.. . .++.+.++++|
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d   99 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD   99 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence            4568899999999999999999999999985   9999997    221         122332211 1 26777888999


Q ss_pred             EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC-ceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348         155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH-CGGAALDVFCEEPPKSEQTFELIKHPK  233 (333)
Q Consensus       155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~~~~L~~~pn  233 (333)
                      +|+.++|     .++++.+.++.|+++.++...+.  ...|.-+.+|.+.|. +..-+.     +..       ..+.-|
T Consensus       100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~a~G~-----~~~-------~~Q~nn  160 (226)
T cd05311         100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIVATGR-----SDF-------PNQVNN  160 (226)
T ss_pred             EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEEEeCC-----CCC-------ccccce
Confidence            9999886     57788899999999999998883  334555555555443 333231     111       126779


Q ss_pred             EEEccCCCCC-----cHHHHHHHHHHHHHHHHHh
Q psy6348         234 VIVTPHLGAS-----TKEAQIRVAVEIAEQFIAL  262 (333)
Q Consensus       234 vi~TPHi~~~-----t~ea~~~~~~~~~~~i~~~  262 (333)
                      +++-|-+|=-     ...--+.|...+++.+.++
T Consensus       161 ~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~  194 (226)
T cd05311         161 VLGFPGIFRGALDVRATKITEEMKLAAAEAIADL  194 (226)
T ss_pred             eeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhh
Confidence            9999988621     1112234445555555553

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=98.12  E-value=5.4e-05  Score=76.93  Aligned_cols=135  Identities=16%  Similarity=0.121  Sum_probs=87.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--CCEEEEEcCCCCHHHHHhcC--------------------cccc-ChhhhccCCCE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--GMKVIGFDPMVSVEDAAKLN--------------------IASL-GLEDIWPLADY  155 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~g--------------------v~~~-~l~ell~~aDv  155 (333)
                      ++|+|||+|.+|..+|..|...  |++|++||.....-.....|                    .... +.++.+++||+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            5799999999999999999866  68999999754221111111                    1111 45677899999


Q ss_pred             EEEecCCch-----------hhHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc---CCCCC
Q psy6348         156 ITVHTPLIP-----------QTKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV---FCEEP  219 (333)
Q Consensus       156 V~l~~P~t~-----------~t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV---~~~EP  219 (333)
                      +++|+|...           +...+.  -+..-+.++++.++|.-|.-.+=..+.+...|.+.. .|  .|+   |.+|=
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g--~~f~v~~~PEr  158 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG--INFQILSNPEF  158 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CC--CCeEEEECCCc
Confidence            999997221           111222  244556789999999999977777778888777531 11  232   45553


Q ss_pred             CC-CccchhhcCCCcEEE
Q psy6348         220 PK-SEQTFELIKHPKVIV  236 (333)
Q Consensus       220 ~~-~~~~~~L~~~pnvi~  236 (333)
                      .. ....+.++..|+|++
T Consensus       159 l~~G~a~~d~~~p~riVi  176 (473)
T PLN02353        159 LAEGTAIEDLFKPDRVLI  176 (473)
T ss_pred             cCCCCcccccCCCCEEEE
Confidence            22 112346778888873

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=98.08  E-value=9.9e-06  Score=81.13  Aligned_cols=92  Identities=22%  Similarity=0.333  Sum_probs=67.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcCcccc---ChhhhccCCCEEEEecCCchhhHh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .+.|++++|||.|.||+.+++.|+..|. +|+++++....  ..+..+|....   ++.+.+.++|+|+.++|.   ...
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s---~~~  255 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGA---PHP  255 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCC---CCc
Confidence            3789999999999999999999999998 89999997633  24455554332   456778899999999873   344


Q ss_pred             hccHHHHhcc-----CCCcEEEEccC
Q psy6348         169 LINAEVLKKC-----KKGVRVVNVAR  189 (333)
Q Consensus       169 li~~~~~~~m-----k~gailIN~aR  189 (333)
                      ++..+.++.+     +.+.++||.+-
T Consensus       256 ~i~~~~l~~~~~~~~~~~~vviDla~  281 (423)
T PRK00045        256 IIGKGMVERALKARRHRPLLLVDLAV  281 (423)
T ss_pred             EEcHHHHHHHHhhccCCCeEEEEeCC
Confidence            5666666543     24567777754

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=98.05  E-value=5e-05  Score=71.10  Aligned_cols=126  Identities=19%  Similarity=0.188  Sum_probs=78.8

Q ss_pred             HHHHHhhCC--CEEEEEcCCC-CHHHHHhcCcccc--ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         113 VALRMQAFG--MKVIGFDPMV-SVEDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       113 vA~~l~~~G--~~V~~~d~~~-~~~~a~~~gv~~~--~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      +|+.|+..|  .+|++||+.. ..+.+.+.|+...  +-.+.++++|+|++|+|. ..+..++ ++....+++|++++++
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~-~~~~~~l-~~~~~~~~~~~iv~Dv   78 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPV-SAIEDVL-EEIAPYLKPGAIVTDV   78 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-H-HHHHHHH-HHHHCGS-TTSEEEE-
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCH-HHHHHHH-HHhhhhcCCCcEEEEe
Confidence            467777777  8999999977 4455667787543  225788999999999994 3445554 5566779999999999


Q ss_pred             cCCcccchHhHHhhhhcCCceEEEec-cCCCCCCC-CccchhhcCCCcEEEccCCC
Q psy6348         188 ARGGIVDENALLDSLKCGHCGGAALD-VFCEEPPK-SEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       188 aRg~~vd~~aL~~aL~~g~i~gaalD-V~~~EP~~-~~~~~~L~~~pnvi~TPHi~  241 (333)
                      +.-+---.+++.+.+. ......+.. -|.+|-.. ......|+.-.++++||+-.
T Consensus        79 ~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~  133 (258)
T PF02153_consen   79 GSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGED  133 (258)
T ss_dssp             -S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTT
T ss_pred             CCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCC
Confidence            8877666666666666 223333333 24443211 00123688889999999866

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.05  E-value=9e-06  Score=71.19  Aligned_cols=95  Identities=19%  Similarity=0.239  Sum_probs=67.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcc---c--------------------c----C
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIA---S--------------------L----G  145 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~---~--------------------~----~  145 (333)
                      ..+...++.|+|.|++|+.-++.++++|++|..+|.+... +.....+..   .                    .    .
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            3567789999999999999999999999999999986532 222333221   1                    1    3


Q ss_pred             hhhhccCCCEEEEecC-CchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         146 LEDIWPLADYITVHTP-LIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       146 l~ell~~aDvV~l~~P-~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +.+.++.+|+|+.++- -....-.++.++.++.||++.+++++|
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            6678899999986433 244566789999999999999999984

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=98.03  E-value=2.1e-05  Score=73.60  Aligned_cols=97  Identities=12%  Similarity=0.193  Sum_probs=66.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ..||||||+|+||+++++.+...|    -+++++|+....     .++.. .+..+++.++|+|++++| ...+..++. 
T Consensus         3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~-   75 (260)
T PTZ00431          3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLL-   75 (260)
T ss_pred             CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHH-
Confidence            468999999999999999998766    259999985421     23333 366778889999999998 445566653 


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      +....++++ .+|.+.-|  +..+.+.+.+..
T Consensus        76 ~i~~~l~~~-~iIS~~aG--i~~~~l~~~~~~  104 (260)
T PTZ00431         76 EIKPYLGSK-LLISICGG--LNLKTLEEMVGV  104 (260)
T ss_pred             HHHhhccCC-EEEEEeCC--ccHHHHHHHcCC
Confidence            343455554 55666555  345555555543

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.02  E-value=1.9e-05  Score=80.74  Aligned_cols=94  Identities=21%  Similarity=0.255  Sum_probs=72.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc--Ch--------------------------
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL--GL--------------------------  146 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~--~l--------------------------  146 (333)
                      ..|.+|.|+|.|.+|...+..++.+|.+|+++|++. ..+.++++|.+..  +.                          
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~  242 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALF  242 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHH
Confidence            468999999999999999999999999999999987 4567778887632  11                          


Q ss_pred             hhhccCCCEEEEecCCchh-hHhhccHHHHhccCCCcEEEEccC
Q psy6348         147 EDIWPLADYITVHTPLIPQ-TKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       147 ~ell~~aDvV~l~~P~t~~-t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      .+.++++|+|+.+...... .-.++.++.++.||+|..+++++-
T Consensus       243 ~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        243 AEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            1113579999998753211 224556889999999999999974

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.00  E-value=2.9e-05  Score=73.74  Aligned_cols=80  Identities=24%  Similarity=0.320  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|. +|+.+|..|...|..|+.++.+.            .++.+.+++||+|+.+++.    .+++.
T Consensus       154 ~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~----p~~v~  217 (285)
T PRK10792        154 GIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGK----PGFIP  217 (285)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCC----ccccc
Confidence            5689999999999999 99999999999999999998642            2578899999999999953    23565


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .   +.+|+|+++||++-..
T Consensus       218 ~---~~vk~gavVIDvGin~  234 (285)
T PRK10792        218 G---EWIKPGAIVIDVGINR  234 (285)
T ss_pred             H---HHcCCCcEEEEccccc
Confidence            5   4469999999998543

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.00  E-value=2.2e-05  Score=68.61  Aligned_cols=82  Identities=27%  Similarity=0.347  Sum_probs=59.1

Q ss_pred             CccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+.++.||++.|||-+. +|+.++..|...|+.|..++.+.            .++++.+++||+|+.+++.    .++|
T Consensus        30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i   93 (160)
T PF02882_consen   30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI   93 (160)
T ss_dssp             TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred             cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence            35679999999999985 99999999999999999988753            2578888999999999863    4566


Q ss_pred             cHHHHhccCCCcEEEEccCCcc
Q psy6348         171 NAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~~  192 (333)
                      ..+   .+|+|+++||++.-..
T Consensus        94 ~~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   94 KAD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             -GG---GS-TTEEEEE--CEEE
T ss_pred             ccc---cccCCcEEEecCCccc
Confidence            555   4699999999987654

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.99  E-value=6.1e-05  Score=64.37  Aligned_cols=81  Identities=27%  Similarity=0.324  Sum_probs=67.5

Q ss_pred             CccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+.++.||++.|+|- ..+|+.+|..|...|++|..++.+.            .++++.+++||+|+.+++..    ++|
T Consensus        22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i   85 (140)
T cd05212          22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV   85 (140)
T ss_pred             cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence            367899999999998 5689999999999999999998642            25778899999999999853    567


Q ss_pred             cHHHHhccCCCcEEEEccCCc
Q psy6348         171 NAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~  191 (333)
                      ..+.   +|+|++++|++...
T Consensus        86 ~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          86 PTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             CHHH---cCCCCEEEEcCCCc
Confidence            6655   69999999997654

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PLN00203 glutamyl-tRNA reductase

Probab=97.96  E-value=1.7e-05  Score=81.25  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=69.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhc-Cc--cc---cChhhhccCCCEEEEecCCchh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKL-NI--AS---LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~-gv--~~---~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ++.+++++|||.|.||+.+++.|...|. +|++++|+...  ..+..+ +.  ..   .++.+.+.++|+|+.++|   .
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~---s  339 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTS---S  339 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccC---C
Confidence            3778999999999999999999999997 79999997633  222333 22  22   256678899999999976   4


Q ss_pred             hHhhccHHHHhccCCC-------cEEEEccCCc
Q psy6348         166 TKNLINAEVLKKCKKG-------VRVVNVARGG  191 (333)
Q Consensus       166 t~~li~~~~~~~mk~g-------ailIN~aRg~  191 (333)
                      ...++.++.++.++++       .+|||.+=..
T Consensus       340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPR  372 (519)
T PLN00203        340 ETPLFLKEHVEALPPASDTVGGKRLFVDISVPR  372 (519)
T ss_pred             CCCeeCHHHHHHhhhcccccCCCeEEEEeCCCC
Confidence            4567888888776432       3677776544

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.95  E-value=3.9e-05  Score=73.00  Aligned_cols=80  Identities=25%  Similarity=0.289  Sum_probs=65.5

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|. +|+++|..|...|.+|..+++..            .++.+.+++||+|+.+++. +   +++.
T Consensus       154 ~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG~-~---~~v~  217 (283)
T PRK14192        154 NIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVGK-P---ELIK  217 (283)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccCC-C---CcCC
Confidence            5689999999999998 99999999999999999998721            2466777999999999962 2   2566


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   +|+|++++|++-..
T Consensus       218 ~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        218 KDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             HHH---cCCCCEEEEEEEee
Confidence            554   79999999997543

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.95  E-value=2.6e-05  Score=75.64  Aligned_cols=86  Identities=24%  Similarity=0.269  Sum_probs=63.3

Q ss_pred             EEEEecChHHHHHHHHHhh-CCCEEEEEcC-CCCH--HHHHhcCcc------------------cc-ChhhhccCCCEEE
Q psy6348         101 LAVLGLGRIGREVALRMQA-FGMKVIGFDP-MVSV--EDAAKLNIA------------------SL-GLEDIWPLADYIT  157 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~-~G~~V~~~d~-~~~~--~~a~~~gv~------------------~~-~l~ell~~aDvV~  157 (333)
                      |||+|||+||+.+++.+.. -+++|++... .+..  ..+..+|+.                  .. ++++++.++|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6999999999999998764 5789887643 2221  222323321                  11 5888999999999


Q ss_pred             EecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      .|+|   .+.+..+.+.+..|+.+++|+..--
T Consensus        81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p~  109 (333)
T TIGR01546        81 DATP---GGIGAKNKPLYEKAGVKAIFQGGEK  109 (333)
T ss_pred             ECCC---CCCChhhHHHHHhCCcCEEEECCCC
Confidence            9976   5677889999999999999987643

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=3.2e-05  Score=73.42  Aligned_cols=79  Identities=24%  Similarity=0.317  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|. +|+.+|..|...|+.|..++...            -++.+..++||+|+.++..    .+++.
T Consensus       159 ~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i~  222 (287)
T PRK14176        159 GVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLIK  222 (287)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----ccccC
Confidence            5679999999999999 99999999999999999998532            2578888999999998753    34676


Q ss_pred             HHHHhccCCCcEEEEccCC
Q psy6348         172 AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg  190 (333)
                      .+   .+|+|+++||++-.
T Consensus       223 ~~---~vk~gavVIDvGin  238 (287)
T PRK14176        223 AD---MVKEGAVIFDVGIT  238 (287)
T ss_pred             HH---HcCCCcEEEEeccc
Confidence            55   47999999999854

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.91  E-value=3e-05  Score=73.35  Aligned_cols=80  Identities=20%  Similarity=0.240  Sum_probs=68.1

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|+|.+ .+|+.+|..+..+|..|..++.+.            .++.+.+++||+|+.+++..    +++.
T Consensus       147 ~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv~  210 (279)
T PRK14178        147 KISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFIT  210 (279)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----cccC
Confidence            568999999999999 999999999999999999987632            25788899999999999732    6777


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      ++.   +|+|+++||++-..
T Consensus       211 ~~~---vk~GavVIDVgi~~  227 (279)
T PRK14178        211 PDM---VKPGATVIDVGINQ  227 (279)
T ss_pred             HHH---cCCCcEEEEeeccc
Confidence            776   49999999998554

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=97.90  E-value=0.00013  Score=69.96  Aligned_cols=110  Identities=16%  Similarity=0.162  Sum_probs=76.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--------------cChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--------------LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--------------~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ++|+|||.|.||..+|.+|...|.+|..+.+.. .+...+.|+..              .+..+....+|+|++++|.. 
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-   83 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT-   83 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence            589999999999999999999999999998865 33333434321              11223467899999999844 


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL  212 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal  212 (333)
                      ++...+ ......++++..++...-| +-.++.+.+.+...++.++..
T Consensus        84 ~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~~  129 (313)
T PRK06249         84 ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGLC  129 (313)
T ss_pred             ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEee
Confidence            344333 3344556788888877554 556777888887767665433

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.89  E-value=0.00014  Score=77.53  Aligned_cols=115  Identities=21%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-ChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~~  152 (333)
                      ++|+|||.|.||..+|..+...|++|+.||+.... +.+           .+.|             ++.. ++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            68999999999999999999999999999987522 111           0111             1111 34 45799


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      ||+|+=++|...+.+.-+-.+.-+.++++++|...+.+  +....|.+++.. .=+-.++..|.+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P  454 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNP  454 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCc
Confidence            99999999999998888888888889999988765544  555667777753 333467777754

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.89  E-value=6e-05  Score=72.67  Aligned_cols=94  Identities=19%  Similarity=0.261  Sum_probs=69.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-------c-Cc------cc-cChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-------L-NI------AS-LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------~-gv------~~-~~l~ell~~aDvV~l~~P~  162 (333)
                      ++|+|+|.|.+|.++|..|...|.+|..|.+.... +....       + |+      .. .++.++++.||+|++.+| 
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP-   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP-   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence            58999999999999999999999999999875421 11111       1 22      11 268899999999999999 


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccCCcccc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVARGGIVD  194 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aRg~~vd  194 (333)
                      +...+.++. +....+++++.+|+++-|=-.+
T Consensus        81 s~~~r~v~~-~l~~~l~~~~~iv~~sKGie~~  111 (329)
T COG0240          81 SQALREVLR-QLKPLLLKDAIIVSATKGLEPE  111 (329)
T ss_pred             hHHHHHHHH-HHhhhccCCCeEEEEeccccCC
Confidence            445555543 3335678999999999874443

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=4e-05  Score=72.77  Aligned_cols=80  Identities=26%  Similarity=0.330  Sum_probs=67.0

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-| .+|+.+|..|...|+.|..++.+.            .++.+.+++||+|+.+++.    .+++.
T Consensus       152 ~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG~----p~~i~  215 (285)
T PRK14191        152 HIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVGK----PDLIK  215 (285)
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecCC----CCcCC
Confidence            568999999999999 999999999999999999986532            1367889999999999963    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.+   |+|+++||++-..
T Consensus       216 ~~~v---k~GavVIDvGi~~  232 (285)
T PRK14191        216 ASMV---KKGAVVVDIGINR  232 (285)
T ss_pred             HHHc---CCCcEEEEeeccc
Confidence            6654   9999999998654

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.88  E-value=8.2e-05  Score=66.77  Aligned_cols=97  Identities=23%  Similarity=0.323  Sum_probs=68.6

Q ss_pred             ccccCCCccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcCccc---cC----hhhhccCCCE
Q psy6348          86 WDRKLYTGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDA--AKLNIAS---LG----LEDIWPLADY  155 (333)
Q Consensus        86 w~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~gv~~---~~----l~ell~~aDv  155 (333)
                      |++....+.++.||++.|||-+. +|+.+|..|...|+.|+.+|...-....  ....-..   .+    +.+.+++||+
T Consensus        50 ~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADI  129 (197)
T cd01079          50 YNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDV  129 (197)
T ss_pred             cccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCE
Confidence            33333447899999999999964 7999999999999999999742211000  0000000   12    6789999999


Q ss_pred             EEEecCCchhhHhh-ccHHHHhccCCCcEEEEccC
Q psy6348         156 ITVHTPLIPQTKNL-INAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       156 V~l~~P~t~~t~~l-i~~~~~~~mk~gailIN~aR  189 (333)
                      |+.+++.    .++ +..+.   +|+|+++||++-
T Consensus       130 VIsAvG~----~~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         130 VITGVPS----PNYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             EEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence            9999984    344 66655   589999999973

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.86  E-value=6e-05  Score=71.30  Aligned_cols=71  Identities=27%  Similarity=0.304  Sum_probs=52.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhcC----ccc-cChhhhccCCCEEEEecCCc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKLN----IAS-LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~g----v~~-~~l~ell~~aDvV~l~~P~t  163 (333)
                      +..+.++++.|+|.|.+|+.++..|...| .+|++++|+...  +.++..+    +.. .++.+.+.++|+|+.++|..
T Consensus       118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g  196 (278)
T PRK00258        118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAG  196 (278)
T ss_pred             CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCC
Confidence            45688999999999999999999999999 699999997532  1222222    111 13456778899999999853

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.85  E-value=0.00017  Score=76.64  Aligned_cols=115  Identities=15%  Similarity=0.092  Sum_probs=83.0

Q ss_pred             CEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-Chhhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWP  151 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~  151 (333)
                      ++|+|||.|.||+.+|..+. ..|++|+.||+.... +.+           .+.|             ++.. ++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            58999999999999999887 589999999987521 111           0111             1122 34 4578


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      +||+|+=++|...+.+.-+-.+.-+.++++++|...+.+  +...+|.++++. .=+-.++..|.+
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP  446 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSP  446 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCc
Confidence            999999999999998888878887889999888765544  455666777643 223467777754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.85  E-value=6.2e-05  Score=72.51  Aligned_cols=97  Identities=24%  Similarity=0.165  Sum_probs=64.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCCH--HHHHhc---C--ccc-cChhhhccCCCEEEEecCCchhh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVSV--EDAAKL---N--IAS-LGLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~---g--v~~-~~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      ..++++|||.|.+|+.+++.+.. ++ .+|.+|+|+...  +.+.+.   |  +.. .++++++++||+|+.++|..   
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---  200 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---  200 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence            46899999999999999975543 44 689999997632  222222   4  333 37888999999998888743   


Q ss_pred             HhhccHHHHhccCCCcEEEEccCCcccchHhHHh
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARGGIVDENALLD  200 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~  200 (333)
                      ..++..+   .+++|+ +||+.-.......++-.
T Consensus       201 ~pvl~~~---~l~~g~-~i~~ig~~~~~~~El~~  230 (314)
T PRK06141        201 EPLVRGE---WLKPGT-HLDLVGNFTPDMRECDD  230 (314)
T ss_pred             CCEecHH---HcCCCC-EEEeeCCCCcccccCCH
Confidence            4556553   468998 45543333333333333

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.84  E-value=7.6e-05  Score=68.77  Aligned_cols=115  Identities=19%  Similarity=0.232  Sum_probs=75.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE-cC-------CC-CHHHH----HhcC-------ccccChhhhc-cC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-DP-------MV-SVEDA----AKLN-------IASLGLEDIW-PL  152 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~-------~~-~~~~a----~~~g-------v~~~~l~ell-~~  152 (333)
                      .++.|+++.|.|+|.+|+.+|+.|..+|++|++. |.       .- +.+..    ++.|       ....+.++++ .+
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~~  106 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLELD  106 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceeec
Confidence            5689999999999999999999999999999954 33       11 22221    1222       1223344443 36


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      ||+++-|.+     .+.++.+...+++  +.+|--+....+. ....+.|+++.+. ++=|..-+
T Consensus       107 ~Dvlip~a~-----~~~i~~~~~~~l~--a~~I~egAN~~~t-~~a~~~L~~rGi~-~~PD~~aN  162 (227)
T cd01076         107 CDILIPAAL-----ENQITADNADRIK--AKIIVEAANGPTT-PEADEILHERGVL-VVPDILAN  162 (227)
T ss_pred             ccEEEecCc-----cCccCHHHHhhce--eeEEEeCCCCCCC-HHHHHHHHHCCCE-EEChHHhc
Confidence            899998875     5667788777776  4444444444444 5566777777775 55555433

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=97.82  E-value=0.00022  Score=75.96  Aligned_cols=115  Identities=18%  Similarity=0.173  Sum_probs=84.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-----------hcC-------------cccc-ChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-----------KLN-------------IASL-GLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g-------------v~~~-~l~ell~~  152 (333)
                      ++|+|||.|.||..+|..+...|++|+.||+.... +.+.           +.|             ++.. ++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            58999999999999999999999999999987522 1110           111             1111 33 34799


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      ||+|+=++|...+.+.-+-.+.-+.++++++|-..+.+  ++..+|..+++. .=+-.++..|.+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~P  454 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFNP  454 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCCC
Confidence            99999999998888888878887889999998766544  556667777653 333467777754

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.81  E-value=0.0001  Score=71.89  Aligned_cols=90  Identities=18%  Similarity=0.142  Sum_probs=65.1

Q ss_pred             EEEEEecChHHHHHHHHHhhCC--------CEEEEEcCCC---CHHHHHh----------c-Ccc------c-cChhhhc
Q psy6348         100 TLAVLGLGRIGREVALRMQAFG--------MKVIGFDPMV---SVEDAAK----------L-NIA------S-LGLEDIW  150 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~---~~~~a~~----------~-gv~------~-~~l~ell  150 (333)
                      +|+|||.|++|.++|..+...|        .+|..|.+..   ..+..+.          + |+.      . .++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            5899999999999999998777        9999998732   1111111          0 221      1 2688999


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      ++||+|++++|. ...+.++ .+.-..++++..+|+++-|=
T Consensus        81 ~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGi  119 (342)
T TIGR03376        81 KGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGL  119 (342)
T ss_pred             hcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCc
Confidence            999999999993 4444443 44555678899999999884

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.81  E-value=3.6e-05  Score=62.05  Aligned_cols=86  Identities=24%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .++|+++.|||.|.+|..=++.|...|.+|++++|..  +.. +..++.  ..+++.+.++|+|+.+++...     +++
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~--~~~-~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n~   75 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI--EFS-EGLIQLIRREFEEDLDGADLVFAATDDPE-----LNE   75 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE--HHH-HTSCEEEESS-GGGCTTESEEEE-SS-HH-----HHH
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch--hhh-hhHHHHHhhhHHHHHhhheEEEecCCCHH-----HHH
Confidence            5889999999999999999999999999999999975  111 122222  256677899999998886422     334


Q ss_pred             HHHhccCCCcEEEEcc
Q psy6348         173 EVLKKCKKGVRVVNVA  188 (333)
Q Consensus       173 ~~~~~mk~gailIN~a  188 (333)
                      ......+.--+++|++
T Consensus        76 ~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   76 AIYADARARGILVNVV   91 (103)
T ss_dssp             HHHHHHHHTTSEEEET
T ss_pred             HHHHHHhhCCEEEEEC
Confidence            4445555555788874

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=97.80  E-value=0.00021  Score=76.38  Aligned_cols=115  Identities=18%  Similarity=0.115  Sum_probs=84.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcC-------------ccc-cChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLN-------------IAS-LGLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~-~~l~ell~~  152 (333)
                      ++|+|||.|.||..+|..+...|++|+.||+.... +.+           .+.|             ++. .++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            68999999999999999999999999999987522 111           0111             111 134 35789


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      ||+|+=++|...+.+.-+-.+.-+.++++++|...+.+  ++..+|.++++.- =+-.++..|.+
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p-~r~ig~Hff~P  476 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRP-EKVIGMHYFSP  476 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCc-cceEEEeccCC
Confidence            99999999999998888888888889999988754333  5666777776542 33478887754

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.79  E-value=0.00015  Score=71.44  Aligned_cols=94  Identities=17%  Similarity=0.205  Sum_probs=65.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC-------CEEEEEcCCCC------HHHHHhc--------Ccc------c-cChhhhc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG-------MKVIGFDPMVS------VEDAAKL--------NIA------S-LGLEDIW  150 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~------~~~a~~~--------gv~------~-~~l~ell  150 (333)
                      ++|+|||.|.+|.++|..+...|       .+|..|.+...      .+...+.        |+.      . .++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            58999999999999999998665       78988876542      1111111        221      1 2678899


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHh--ccCCCcEEEEccCCcccc
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLK--KCKKGVRVVNVARGGIVD  194 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~--~mk~gailIN~aRg~~vd  194 (333)
                      +.||+|++++|. ...+.++ ++.-.  .+++++++|+++-|=-.+
T Consensus        92 ~~aDiIvlAVPs-q~l~~vl-~~l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         92 EDADLLIFVIPH-QFLESVL-SQIKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             hcCCEEEEEcCh-HHHHHHH-HHhccccccCCCCEEEEEeCCcccC
Confidence            999999999993 3444444 33333  567788999998874433

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.75  E-value=0.00054  Score=64.14  Aligned_cols=137  Identities=18%  Similarity=0.148  Sum_probs=88.1

Q ss_pred             CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE-c-----
Q psy6348          55 NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-D-----  128 (333)
Q Consensus        55 n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d-----  128 (333)
                      .+.+++--++..+..++++                  .+.++.|+|+.|-|||++|+.+|+.|..+|++|++. |     
T Consensus        13 R~~aTg~Gv~~~~~~~~~~------------------~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i   74 (254)
T cd05313          13 RPEATGYGLVYFVEEMLKD------------------RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYV   74 (254)
T ss_pred             CCchhHHHHHHHHHHHHHh------------------cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceE
Confidence            4456665555555555443                  246789999999999999999999999999999953 3     


Q ss_pred             --CCC-CHHHH------H-hc------------CccccChhhhc-cCCCEEEEecCCchhhHhhccHHHHhccC-CCc-E
Q psy6348         129 --PMV-SVEDA------A-KL------------NIASLGLEDIW-PLADYITVHTPLIPQTKNLINAEVLKKCK-KGV-R  183 (333)
Q Consensus       129 --~~~-~~~~a------~-~~------------gv~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk-~ga-i  183 (333)
                        +.- +.+..      + +.            +.+..+.++++ .+||+++-|     .+.+.|+.+..+.++ +++ +
T Consensus        75 ~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPc-----Al~~~I~~~na~~i~~~~ak~  149 (254)
T cd05313          75 YDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPC-----ATQNEVDAEDAKLLVKNGCKY  149 (254)
T ss_pred             ECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEec-----cccccCCHHHHHHHHHcCCEE
Confidence              321 11111      0 11            13334555554 469999987     467889999888884 244 4


Q ss_pred             EEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       184 lIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      ++-.+-+.+ .. +-.+.|.+..+. ++=|+..+
T Consensus       150 I~EgAN~p~-t~-~a~~~L~~rGI~-vvPD~laN  180 (254)
T cd05313         150 VAEGANMPC-TA-EAIEVFRQAGVL-FAPGKAAN  180 (254)
T ss_pred             EEeCCCCCC-CH-HHHHHHHHCCcE-EECchhhc
Confidence            455555555 44 455777777765 55565443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.75  E-value=9e-05  Score=60.06  Aligned_cols=78  Identities=21%  Similarity=0.219  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhhCCCEEEEEcCCCCHHHHHh----cCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcE
Q psy6348         109 IGREVALRMQAFGMKVIGFDPMVSVEDAAK----LNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR  183 (333)
Q Consensus       109 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~----~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gai  183 (333)
                      -+..+++.|+..|++|.+|||+.+......    .+++.. ++++.++.+|+|+++++ .++-+.+-..+....|+++.+
T Consensus        18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~   96 (106)
T PF03720_consen   18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV   96 (106)
T ss_dssp             HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred             HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence            356789999999999999999997666655    467665 78999999999999998 455555444556677889999


Q ss_pred             EEEc
Q psy6348         184 VVNV  187 (333)
Q Consensus       184 lIN~  187 (333)
                      ||++
T Consensus        97 iiD~  100 (106)
T PF03720_consen   97 IIDG  100 (106)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9987

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=97.75  E-value=0.00042  Score=66.57  Aligned_cols=119  Identities=21%  Similarity=0.156  Sum_probs=85.2

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcCc-c---------cc-Chhh--hccC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLNI-A---------SL-GLED--IWPL  152 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~gv-~---------~~-~l~e--ll~~  152 (333)
                      -+++||||.|.||+.+|..+..-|++|..+|++... +.+           .+.|. .         .. ...+  .+++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~~l~~   82 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLAALKD   82 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchhHhcc
Confidence            479999999999999999998877999999997421 111           11121 0         11 1122  6899


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP  219 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP  219 (333)
                      ||+|+=++|-+.+.+.-+-++.=+..+++++|-.-.++  +.-.++.++++ .+=+..++..|.+-|
T Consensus        83 ~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~~-rper~iG~HFfNP~~  146 (307)
T COG1250          83 ADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEALK-RPERFIGLHFFNPVP  146 (307)
T ss_pred             CCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHhC-CchhEEEEeccCCCC
Confidence            99999999999898888878887888999998765544  45566777774 333457887776543

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.73  E-value=0.00011  Score=69.54  Aligned_cols=80  Identities=21%  Similarity=0.260  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|..|..++.+.            .++.+..++||+|+.++..    .+++.
T Consensus       152 ~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvGk----p~~i~  215 (281)
T PRK14183        152 EIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVGK----PNLIT  215 (281)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCc----ccccC
Confidence            568999999999998 899999999999999999886532            2467889999999999963    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   .|+|+++||++-..
T Consensus       216 ~~~---vk~gavvIDvGin~  232 (281)
T PRK14183        216 EDM---VKEGAIVIDIGINR  232 (281)
T ss_pred             HHH---cCCCcEEEEeeccc
Confidence            665   58999999998544

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.72  E-value=0.0004  Score=74.06  Aligned_cols=115  Identities=18%  Similarity=0.104  Sum_probs=84.0

Q ss_pred             CEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-Chhhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWP  151 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~  151 (333)
                      ++|+|||.|.||..+|..+. ..|++|..||+.... +.+           .+.|             ++.. ++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            68999999999999999888 789999999986521 111           0111             1111 34 4578


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      +||+|+=++|.+.+.+.-+-.+.-+.++++++|...+.+  +....|.+.+.. .=+..++..|.+
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~P  451 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFSP  451 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCCc
Confidence            999999999998888888878877889999999766554  566667777643 223477877753

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.72  E-value=0.00012  Score=71.22  Aligned_cols=90  Identities=20%  Similarity=0.270  Sum_probs=63.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc---------Cc------cc-cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL---------NI------AS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---------gv------~~-~~l~ell~~aDvV~l~~P  161 (333)
                      ++|+|||.|.+|..+|..|...| +|..|.++... +...+.         +.      .. .++++.++.+|+|++++|
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            58999999999999999999988 67778764321 111211         11      11 256778899999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                       +..++..+ ++....++++..+|++.-|=
T Consensus        87 -s~~~~~vl-~~i~~~l~~~~~vIsl~kGi  114 (341)
T PRK12439         87 -SHGFRGVL-TELAKELRPWVPVVSLVKGL  114 (341)
T ss_pred             -HHHHHHHH-HHHHhhcCCCCEEEEEEeCC
Confidence             34555554 44445678888999998863

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.71  E-value=0.00016  Score=68.76  Aligned_cols=81  Identities=22%  Similarity=0.320  Sum_probs=67.8

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|..|+.++.+.            .++.+.+++||+|+.+++.    .+++.
T Consensus       153 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG~----p~~i~  216 (284)
T PRK14190        153 NIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVGK----PKLIT  216 (284)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----CCcCC
Confidence            567999999999994 689999999999999999987532            2578889999999999963    45788


Q ss_pred             HHHHhccCCCcEEEEccCCcc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~  192 (333)
                      .+.+   |+|+++||++...+
T Consensus       217 ~~~i---k~gavVIDvGi~~~  234 (284)
T PRK14190        217 ADMV---KEGAVVIDVGVNRL  234 (284)
T ss_pred             HHHc---CCCCEEEEeecccc
Confidence            7775   89999999987653

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.71  E-value=0.00012  Score=71.02  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=64.5

Q ss_pred             CCEEEEEecChHHHHHHHHHhh--CCCEEEEEcCCCCHH-H-H---HhcCcc--c-cChhhhccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA--FGMKVIGFDPMVSVE-D-A---AKLNIA--S-LGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~--~G~~V~~~d~~~~~~-~-a---~~~gv~--~-~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      -+++||||.|.+|+..++.+..  ..-+|.+||++.... . +   .+.|+.  . .+.++++++||+|++|+|.   ..
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s---~~  204 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPS---RK  204 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCC---CC
Confidence            4799999999999997766543  245899999976331 1 1   234532  2 3799999999999999984   34


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      .++..+.   +|+|+.+..++....
T Consensus       205 P~~~~~~---l~~g~~v~~vGs~~p  226 (325)
T TIGR02371       205 PVVKADW---VSEGTHINAIGADAP  226 (325)
T ss_pred             cEecHHH---cCCCCEEEecCCCCc
Confidence            6665543   699999999985443

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.71  E-value=0.00018  Score=69.26  Aligned_cols=90  Identities=17%  Similarity=0.305  Sum_probs=62.1

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--Ccc------------c-cChhhhc-cCCCEEEEecCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--NIA------------S-LGLEDIW-PLADYITVHTPL  162 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--gv~------------~-~~l~ell-~~aDvV~l~~P~  162 (333)
                      +|+|||.|.||..+|..|...|.+|..|+++... +...+.  +..            . .++++.+ ..+|+|++++|.
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks   81 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT   81 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence            6999999999999999999999999999985421 112211  111            1 1455665 589999999993


Q ss_pred             chhhHhhccHHHHh-ccCCCcEEEEccCCc
Q psy6348         163 IPQTKNLINAEVLK-KCKKGVRVVNVARGG  191 (333)
Q Consensus       163 t~~t~~li~~~~~~-~mk~gailIN~aRg~  191 (333)
                       ..+..++ ++... .++++..+|.+.-|=
T Consensus        82 -~~~~~~l-~~l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         82 -QQLRTIC-QQLQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             -HHHHHHH-HHHHHhcCCCCCEEEEEEcCe
Confidence             4455554 33334 567777777776663

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.70  E-value=0.00015  Score=64.69  Aligned_cols=96  Identities=21%  Similarity=0.121  Sum_probs=60.2

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH--HHHhc----Ccc--c---c---ChhhhccCCCEEE
Q psy6348          93 GTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE--DAAKL----NIA--S---L---GLEDIWPLADYIT  157 (333)
Q Consensus        93 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~----gv~--~---~---~l~ell~~aDvV~  157 (333)
                      |..+.++++.|+|. |.+|+.+++.+...|.+|+.++|.....  .....    +.+  .   .   ++.+.++++|+|+
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            45678999999996 9999999999999999999999865221  11111    111  1   1   2346677888888


Q ss_pred             EecCCchhhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348         158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      .++|....  ..+..+  ...+++.+++|+.+...
T Consensus       103 ~at~~g~~--~~~~~~--~~~~~~~vv~D~~~~~~  133 (194)
T cd01078         103 AAGAAGVE--LLEKLA--WAPKPLAVAADVNAVPP  133 (194)
T ss_pred             ECCCCCce--echhhh--cccCceeEEEEccCCCC
Confidence            88774432  111111  12344566666655543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.69  E-value=0.00035  Score=68.52  Aligned_cols=154  Identities=19%  Similarity=0.180  Sum_probs=112.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcC----cc-ccChhhh---ccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLN----IA-SLGLEDI---WPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----v~-~~~l~el---l~~aDvV~l~~P~t~~t~~  168 (333)
                      ..+|+||+|-||+.+|......|++|.+|+|+.+.  +..++.+    +. ..+++|+   ++.---|++++-.-.-...
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~   83 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA   83 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence            46999999999999999999999999999998743  3333332    21 2366665   5667788888754322244


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHHH
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ  248 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~  248 (333)
                      +| ++++..|.+|-++|+-+...--|+..-.++|.+..|...+.-|...|--.       +.-|.+     +-|-+.|++
T Consensus        84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA-------~~GPSi-----MpGG~~eay  150 (473)
T COG0362          84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGA-------RHGPSI-----MPGGQKEAY  150 (473)
T ss_pred             HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccccc-------ccCCCc-----CCCCCHHHH
Confidence            44 67788999999999999999999999999999999999999998877421       122333     234577888


Q ss_pred             HHHHHHHHHHHHHhHcCC
Q psy6348         249 IRVAVEIAEQFIALANTN  266 (333)
Q Consensus       249 ~~~~~~~~~~i~~~~~~~  266 (333)
                      +.+.- +.+.|.+-..|+
T Consensus       151 ~~v~p-il~~IaAk~~g~  167 (473)
T COG0362         151 ELVAP-ILTKIAAKVDGE  167 (473)
T ss_pred             HHHHH-HHHHHHhhcCCC
Confidence            77654 346666644454

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.68  E-value=0.00023  Score=67.58  Aligned_cols=81  Identities=26%  Similarity=0.309  Sum_probs=67.2

Q ss_pred             CccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+.++.||++.|||-+ .+|+.+|..|...|+.|+.++...            .++.+.+++||+|+.+++.    .+++
T Consensus       151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i  214 (284)
T PRK14170        151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV  214 (284)
T ss_pred             hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence            3568999999999996 579999999999999999987632            2578889999999999974    4567


Q ss_pred             cHHHHhccCCCcEEEEccCCc
Q psy6348         171 NAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~  191 (333)
                      ..+.   .|+|+++||++-..
T Consensus       215 ~~~~---vk~GavVIDvGin~  232 (284)
T PRK14170        215 KKDY---IKPGAIVIDVGMDR  232 (284)
T ss_pred             CHHH---cCCCCEEEEccCcc
Confidence            7665   58999999998665

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.66  E-value=0.00015  Score=72.21  Aligned_cols=93  Identities=26%  Similarity=0.338  Sum_probs=69.1

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhcCccccC---hhhhccCCCEEEEecCCchhhHhh
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKLNIASLG---LEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~gv~~~~---l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      |.++++.|||+|.||..+|+.|...| .+|++.+|+...  +.++++|..+.+   +.+.+.++|+|+.++.   ....+
T Consensus       176 L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~i  252 (414)
T COG0373         176 LKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHPI  252 (414)
T ss_pred             cccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCccc
Confidence            78999999999999999999999999 478888997743  447778876654   5567899999999964   44556


Q ss_pred             ccHHHHhcc-C--CCcEEEEccCCc
Q psy6348         170 INAEVLKKC-K--KGVRVVNVARGG  191 (333)
Q Consensus       170 i~~~~~~~m-k--~gailIN~aRg~  191 (333)
                      +..+.+... +  +.-++||.+=..
T Consensus       253 i~~~~ve~a~~~r~~~livDiavPR  277 (414)
T COG0373         253 ITREMVERALKIRKRLLIVDIAVPR  277 (414)
T ss_pred             cCHHHHHHHHhcccCeEEEEecCCC
Confidence            665554432 1  124778775443

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.65  E-value=0.00029  Score=70.85  Aligned_cols=117  Identities=21%  Similarity=0.196  Sum_probs=77.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcC--------C-CCHHHH------------------HhcCccccC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP--------M-VSVEDA------------------AKLNIASLG  145 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~--------~-~~~~~a------------------~~~gv~~~~  145 (333)
                      |.+|.|+|+.|.|+|++|+..|+.|..+|.+|++..+        . .+.+..                  ...+.+..+
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~  302 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE  302 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence            5689999999999999999999999999999998432        1 111111                  111334445


Q ss_pred             hhhhc-cCCCEEEEecCCchhhHhhccHHHHhccCC-CcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         146 LEDIW-PLADYITVHTPLIPQTKNLINAEVLKKCKK-GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       146 l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk~-gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      -++++ ..||+++-|     .+.+.|+.+....++. |..+|--+-..++..++.. .|.+..|. .+=|+..
T Consensus       303 ~d~~~~~~cDIliPa-----Al~n~I~~~na~~l~a~g~~~V~EgAN~P~t~eA~~-~L~~rgI~-~~PD~~a  368 (444)
T PRK14031        303 GARPWGEKGDIALPS-----ATQNELNGDDARQLVANGVIAVSEGANMPSTPEAIK-VFQDAKIL-YAPGKAA  368 (444)
T ss_pred             CcccccCCCcEEeec-----ccccccCHHHHHHHHhcCCeEEECCCCCCCCHHHHH-HHHHCCcE-EeChhhc
Confidence            55654 469999877     4578899998888865 5555555554466666654 44445443 4455433

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=97.65  E-value=0.00018  Score=61.13  Aligned_cols=109  Identities=17%  Similarity=0.188  Sum_probs=75.2

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccC---------------hhhhccCCCEEEEecCCchh
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG---------------LEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~---------------l~ell~~aDvV~l~~P~t~~  165 (333)
                      |.|+|.|.||.-+|.+|+..|.+|..+++....+..++.|+....               ..+....+|+|++++.. .+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~~   79 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-YQ   79 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-GG
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-cc
Confidence            689999999999999999999999999986523434555553211               11356789999999974 44


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL  212 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal  212 (333)
                      +...+.. ....+++++.++-. -.++-.++.+.+.+...++.++..
T Consensus        80 ~~~~l~~-l~~~~~~~t~iv~~-qNG~g~~~~l~~~~~~~~v~~g~~  124 (151)
T PF02558_consen   80 LEQALQS-LKPYLDPNTTIVSL-QNGMGNEEVLAEYFPRPRVLGGVT  124 (151)
T ss_dssp             HHHHHHH-HCTGEETTEEEEEE-SSSSSHHHHHHCHSTGSGEEEEEE
T ss_pred             hHHHHHH-HhhccCCCcEEEEE-eCCCCcHHHHHHHcCCCcEEEEEE
Confidence            5555533 55666777677655 444667788888886666655443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.64  E-value=0.00024  Score=66.77  Aligned_cols=95  Identities=21%  Similarity=0.219  Sum_probs=62.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhc---C-ccccChhhh-ccCCCEEEEecCCch--h
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKL---N-IASLGLEDI-WPLADYITVHTPLIP--Q  165 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~---g-v~~~~l~el-l~~aDvV~l~~P~t~--~  165 (333)
                      ...+|+++|+|.|.+|+.++..+...|.+|+++++....  +.+++.   + ....++++. ..++|+|+.++|..-  .
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~  193 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN  193 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence            356899999999999999999999999999999986522  112221   2 122344443 357999999999631  1


Q ss_pred             hHh-hccHHHHhccCCCcEEEEccCCcc
Q psy6348         166 TKN-LINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       166 t~~-li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      ... .+.   .+.++++.+++++.-...
T Consensus       194 ~~~~~~~---~~~l~~~~~v~D~~y~p~  218 (270)
T TIGR00507       194 IDEPPVP---AEKLKEGMVVYDMVYNPG  218 (270)
T ss_pred             CCCCCCC---HHHcCCCCEEEEeccCCC
Confidence            111 111   234667777777755443

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.63  E-value=0.00019  Score=64.95  Aligned_cols=88  Identities=14%  Similarity=0.162  Sum_probs=60.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcC-cccc--Ch-hhhccCCCEEEEecCCchhhH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLN-IASL--GL-EDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g-v~~~--~l-~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .++.||++.|||.|.+|...++.|...|.+|++++|....+..  ...+ +.+.  .+ ++.+..+|+|+.++...+-+ 
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~elN-   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPRVN-   84 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHHHH-
Confidence            5789999999999999999999999999999999987644321  1222 3222  22 34578899999988754333 


Q ss_pred             hhccHHHHhccCCCcEEEEc
Q psy6348         168 NLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~  187 (333)
                      ..+    ....+.+ .++|+
T Consensus        85 ~~i----~~~a~~~-~lvn~   99 (202)
T PRK06718         85 EQV----KEDLPEN-ALFNV   99 (202)
T ss_pred             HHH----HHHHHhC-CcEEE
Confidence            233    2222333 47777

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.62  E-value=0.00022  Score=68.12  Aligned_cols=117  Identities=26%  Similarity=0.234  Sum_probs=83.4

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+....            .++.+.+++||+|+.+++.    .+++.
T Consensus       153 ~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i~  216 (297)
T PRK14186        153 QIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLIG  216 (297)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence            568999999999995 589999999999999999987532            2578889999999999974    35677


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHH
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA  247 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea  247 (333)
                      .+.   +|+|+++||++-..+.+..      ++|++.   =||-.++         .... --.+||--||.-.=+
T Consensus       217 ~~~---ik~gavVIDvGin~~~~~~------~~gkl~---GDvd~~~---------v~~~-a~~iTPVPGGVGp~T  270 (297)
T PRK14186        217 AEM---VKPGAVVVDVGIHRLPSSD------GKTRLC---GDVDFEE---------VEPV-AAAITPVPGGVGPMT  270 (297)
T ss_pred             HHH---cCCCCEEEEeccccccccc------cCCcee---CCccHHH---------HHhh-ceEecCCCCCchHHH
Confidence            665   5899999999866542211      135543   3652111         1111 237899978765433

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.62  E-value=0.0002  Score=69.20  Aligned_cols=105  Identities=16%  Similarity=0.163  Sum_probs=67.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEEE-EcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVIG-FDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      .+|||||+|+||+.+++.+... ++++.+ ||+..........++.. .+.++++.+.|+|++|+|....     -....
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-----~~~~~   78 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-----IPEQA   78 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-----HHHHH
Confidence            5899999999999999988765 899887 68764222222234322 3677788899999999985433     13344


Q ss_pred             hccCCCcEEEEccCC--cccc-hHhHHhhhhc-CCce
Q psy6348         176 KKCKKGVRVVNVARG--GIVD-ENALLDSLKC-GHCG  208 (333)
Q Consensus       176 ~~mk~gailIN~aRg--~~vd-~~aL~~aL~~-g~i~  208 (333)
                      ..++.|.-+|+..--  .+-+ .+.|-++-++ |++.
T Consensus        79 ~~L~aG~NVV~s~~~h~~~p~~~~~ld~AAk~~g~vs  115 (324)
T TIGR01921        79 PYFAQFANTVDSFDNHRDIPRHRQVMDAAAKAAGNVS  115 (324)
T ss_pred             HHHHcCCCEEECCCcccCCHHHHHHHHHHHHHcCCEE
Confidence            556777778877432  1112 2334444453 5654

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.62  E-value=0.00017  Score=69.18  Aligned_cols=89  Identities=18%  Similarity=0.072  Sum_probs=65.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH--HHHHhc---Cccc--cChhhhccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV--EDAAKL---NIAS--LGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~~---gv~~--~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      ..++++|||.|.+|+..++.+.. ++. +|.+|+++...  ..+.++   ++..  .++++++.++|+|+.++|.+   .
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~  200 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T  200 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence            56899999999999999998864 564 79999997632  222222   3332  37889999999999999843   4


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      .++..    .+|||+.++.++.-..
T Consensus       201 Pl~~~----~~~~g~hi~~iGs~~p  221 (304)
T PRK07340        201 PVYPE----AARAGRLVVAVGAFTP  221 (304)
T ss_pred             ceeCc----cCCCCCEEEecCCCCC
Confidence            66643    3699999999986443

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.59  E-value=0.00026  Score=67.30  Aligned_cols=81  Identities=25%  Similarity=0.294  Sum_probs=67.6

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|..|+.+....            .++.+..++||+|+.++..    .+++.
T Consensus       150 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvGk----p~~i~  213 (287)
T PRK14173        150 GIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVGR----PHLIT  213 (287)
T ss_pred             CCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence            568999999999995 689999999999999999887642            2578889999999999973    46777


Q ss_pred             HHHHhccCCCcEEEEccCCcc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~  192 (333)
                      .+.   +|+|+++||++-..+
T Consensus       214 ~~~---vk~GavVIDVGin~~  231 (287)
T PRK14173        214 PEM---VRPGAVVVDVGINRV  231 (287)
T ss_pred             HHH---cCCCCEEEEccCccc
Confidence            666   489999999987654

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.00025  Score=67.25  Aligned_cols=80  Identities=23%  Similarity=0.296  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|..|+.+....            .++.+..++||+|+.+++.    .+++.
T Consensus       151 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i~  214 (282)
T PRK14169        151 DIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFIG  214 (282)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence            568999999999995 589999999999999999886532            2578889999999999974    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   +|+|+++||++-..
T Consensus       215 ~~~---vk~GavVIDvGin~  231 (282)
T PRK14169        215 ADA---VKPGAVVIDVGISR  231 (282)
T ss_pred             HHH---cCCCcEEEEeeccc
Confidence            765   58999999998644

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.58  E-value=0.00024  Score=69.17  Aligned_cols=98  Identities=28%  Similarity=0.297  Sum_probs=71.9

Q ss_pred             CccccCCCEEEEEec-ChHHHHHHHHHhh-CC-CEEEEEcCCCCH--HHHHhcC-ccccChhhhccCCCEEEEecCCchh
Q psy6348          92 TGTELYGKTLAVLGL-GRIGREVALRMQA-FG-MKVIGFDPMVSV--EDAAKLN-IASLGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~-~G-~~V~~~d~~~~~--~~a~~~g-v~~~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      .+.++.||++.|+|. |.||+.+++.|.. .| .+++.+++....  +...+.+ ....++++.+.++|+|+.+.-   .
T Consensus       149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts---~  225 (340)
T PRK14982        149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVAS---M  225 (340)
T ss_pred             hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCc---C
Confidence            356799999999999 8999999999974 56 489999885422  1122332 233478899999999887764   2


Q ss_pred             hHh-hccHHHHhccCCCcEEEEccCCcccch
Q psy6348         166 TKN-LINAEVLKKCKKGVRVVNVARGGIVDE  195 (333)
Q Consensus       166 t~~-li~~~~~~~mk~gailIN~aRg~~vd~  195 (333)
                      ... .++.+.   ++++.++||.|+..=|+.
T Consensus       226 ~~~~~I~~~~---l~~~~~viDiAvPRDVd~  253 (340)
T PRK14982        226 PKGVEIDPET---LKKPCLMIDGGYPKNLDT  253 (340)
T ss_pred             CcCCcCCHHH---hCCCeEEEEecCCCCCCc
Confidence            234 366654   489999999999987775

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.00029  Score=66.89  Aligned_cols=80  Identities=20%  Similarity=0.272  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.++...            .++.+..++||+|+.+++.    .+++.
T Consensus       154 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvGk----~~~i~  217 (284)
T PRK14177        154 GIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVGK----PEFIK  217 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCCC----cCccC
Confidence            568999999999995 589999999999999999998642            2577889999999999874    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   .|+|+++||++-..
T Consensus       218 ~~~---ik~gavVIDvGin~  234 (284)
T PRK14177        218 ADW---ISEGAVLLDAGYNP  234 (284)
T ss_pred             HHH---cCCCCEEEEecCcc
Confidence            665   58999999997543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=97.57  E-value=0.00036  Score=67.00  Aligned_cols=114  Identities=16%  Similarity=0.210  Sum_probs=74.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------C----ccc-cChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------N----IAS-LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----v~~-~~l~ell~~aDvV~l~~P~t  163 (333)
                      ++|+|||.|.||..+|..+...|. +|+.+|...........         .    +.. .++++ +++||+|+++++..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            589999999999999999988776 89999986543332211         0    111 25655 78999999998832


Q ss_pred             h-----------hhHhhccH--HHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE--ec
Q psy6348         164 P-----------QTKNLINA--EVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA--LD  213 (333)
Q Consensus       164 ~-----------~t~~li~~--~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa--lD  213 (333)
                      .           .+..++..  +.+....+++++|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            1           11122211  22333457889999987665555566665  5566677775  67

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.57  E-value=0.00049  Score=62.20  Aligned_cols=92  Identities=24%  Similarity=0.327  Sum_probs=67.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH----------H-----HH-------HhcC--cc--c--
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV----------E-----DA-------AKLN--IA--S--  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~----------~-----~a-------~~~g--v~--~--  143 (333)
                      ..|..++|+|+|+|.+|+.+|..|...|. +++.+|+.. ..          +     ++       .+..  +.  .  
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~   96 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD   96 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence            45888999999999999999999999999 699998761 00          0     00       0000  11  0  


Q ss_pred             -----cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348         144 -----LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       144 -----~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN  186 (333)
                           .+++++++++|+|+-+ ..+.+++.++.......+++..++..
T Consensus        97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~  143 (200)
T TIGR02354        97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA  143 (200)
T ss_pred             eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence                 1245578899999999 57889999998888888877666664

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.57  E-value=0.00028  Score=63.98  Aligned_cols=89  Identities=22%  Similarity=0.144  Sum_probs=63.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH--HHhc-Ccccc--C-hhhhccCCCEEEEecCCchhhH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED--AAKL-NIASL--G-LEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~-gv~~~--~-l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .++.|+++.|||.|.+|..-++.|..+|.+|.+++|....+.  ..+. .+++.  + -.+.+..+|+|+.++...+   
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~---   81 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE---   81 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence            468999999999999999999999999999999999875432  1222 34332  1 2355788999888865432   


Q ss_pred             hhccHHHHhccCCCcEEEEc
Q psy6348         168 NLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~  187 (333)
                        ++.......+.-.++||+
T Consensus        82 --ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        82 --LNRRVAHAARARGVPVNV   99 (205)
T ss_pred             --HHHHHHHHHHHcCCEEEE
Confidence              334445555555678886

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.57  E-value=0.00027  Score=66.88  Aligned_cols=80  Identities=23%  Similarity=0.319  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..++...            .++.+..++||+|+.+++.    .+++.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i~  216 (278)
T PRK14172        153 NIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFID  216 (278)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence            567899999999995 589999999999999999988532            2578889999999999974    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   +|+|+++||++-..
T Consensus       217 ~~~---ik~gavVIDvGin~  233 (278)
T PRK14172        217 EEY---VKEGAIVIDVGTSS  233 (278)
T ss_pred             HHH---cCCCcEEEEeeccc
Confidence            766   58999999997544

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.56  E-value=0.0005  Score=69.21  Aligned_cols=117  Identities=20%  Similarity=0.177  Sum_probs=76.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE-c-------CCC-CHHHHH---------------hcCccccChhh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-D-------PMV-SVEDAA---------------KLNIASLGLED  148 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d-------~~~-~~~~a~---------------~~gv~~~~l~e  148 (333)
                      +.++.|+||.|.|||++|+.+|+.|..+|++|++. |       +.- ..+...               ..+.+..+.++
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~  306 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS  306 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence            45789999999999999999999999999999987 5       211 222110               00223345555


Q ss_pred             hcc-CCCEEEEecCCchhhHhhccHHHHhccC-CCc-EEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         149 IWP-LADYITVHTPLIPQTKNLINAEVLKKCK-KGV-RVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       149 ll~-~aDvV~l~~P~t~~t~~li~~~~~~~mk-~ga-ilIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      ++. +||+++-|..     .+.|+.+....++ +++ +++-.+-+.+  ..+-.+.|.+..|. ++=|+..+
T Consensus       307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~--t~~A~~~L~~rGI~-~vPD~laN  370 (445)
T PRK09414        307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS--TPEAIEVFLEAGVL-FAPGKAAN  370 (445)
T ss_pred             ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC--CHHHHHHHHHCCcE-EECchhhc
Confidence            554 6999998864     6678777766663 244 4555555665  44455677777665 55555433

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.56  E-value=0.00074  Score=61.85  Aligned_cols=107  Identities=30%  Similarity=0.244  Sum_probs=68.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEE-EcCCC-------CH-HHH---Hhc-Cccc------cChhhhc-cCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-FDPMV-------SV-EDA---AKL-NIAS------LGLEDIW-PLA  153 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~-------~~-~~a---~~~-gv~~------~~l~ell-~~a  153 (333)
                      .++.|+++.|.|||++|+.+|+.|...|.+|++ .|.+.       +. +..   ++. ++..      .+-++++ .+|
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~   98 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV   98 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence            568999999999999999999999999997666 34432       11 111   111 2221      1223443 379


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      |+++-|.+     .+.|+.+....++ =.+++-.+.+.+-+  .-.+.|++..+.
T Consensus        99 DVlipaA~-----~~~i~~~~a~~l~-a~~V~e~AN~p~t~--~a~~~L~~~Gi~  145 (217)
T cd05211          99 DIFAPCAL-----GNVIDLENAKKLK-AKVVAEGANNPTTD--EALRILHERGIV  145 (217)
T ss_pred             cEEeeccc-----cCccChhhHhhcC-ccEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence            99999876     4578888777776 23444455555544  345666665553

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.55  E-value=0.00031  Score=66.67  Aligned_cols=80  Identities=28%  Similarity=0.304  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|..|+.++.+.            .++.+..++||+|+.++..    .+++.
T Consensus       152 ~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGk----p~~i~  215 (282)
T PRK14166        152 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLLR  215 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence            568999999999996 589999999999999999988642            2578889999999999974    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   .|+|+++||++-..
T Consensus       216 ~~~---vk~GavVIDvGin~  232 (282)
T PRK14166        216 SDM---VKEGVIVVDVGINR  232 (282)
T ss_pred             HHH---cCCCCEEEEecccc
Confidence            765   58999999998543

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.53  E-value=0.00036  Score=66.24  Aligned_cols=79  Identities=23%  Similarity=0.286  Sum_probs=65.7

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|..|..++.+.            .++.+..++||+|+.+++.    .+++.
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i~  216 (282)
T PRK14180        153 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFIT  216 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcCC
Confidence            568999999999995 589999999999999999987642            2577788999999999974    45677


Q ss_pred             HHHHhccCCCcEEEEccCC
Q psy6348         172 AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg  190 (333)
                      .+.   .|+|+++||++-.
T Consensus       217 ~~~---vk~gavVIDvGin  232 (282)
T PRK14180        217 ADM---VKEGAVVIDVGIN  232 (282)
T ss_pred             HHH---cCCCcEEEEeccc
Confidence            655   5899999999754

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00017  Score=68.86  Aligned_cols=93  Identities=23%  Similarity=0.283  Sum_probs=70.7

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-hcCcc-------ccChhhhccCCCEEEEec--CCc
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-KLNIA-------SLGLEDIWPLADYITVHT--PLI  163 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~gv~-------~~~l~ell~~aDvV~l~~--P~t  163 (333)
                      .+..-++.|||.|-+|..-|+.+..+|.+|...|.+... .... .++.+       ...+++.++++|+|+-.+  |. 
T Consensus       165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpg-  243 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPG-  243 (371)
T ss_pred             CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecC-
Confidence            355678999999999999999999999999999986422 1111 11221       125889999999998764  42 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      ...-.++.++.+++||||++||+++
T Consensus       244 akaPkLvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         244 AKAPKLVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             CCCceehhHHHHHhcCCCcEEEEEE
Confidence            3445677888999999999999984

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.51  E-value=0.00031  Score=70.28  Aligned_cols=90  Identities=11%  Similarity=0.217  Sum_probs=61.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcC-cccc---ChhhhccCCCEEEEecCCchhhH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLN-IASL---GLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g-v~~~---~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .+.|+++.|||.|.||+.+++.|...|. ++++++|+...  ..+..++ ....   ++.+.+.++|+|+.|++.   ..
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a---~~  254 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNV---LE  254 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCC---CC
Confidence            4678999999999999999999999996 79999997532  2334444 3333   456778999999999873   23


Q ss_pred             hhccHHHHhccCCCcEEEEccC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aR  189 (333)
                      .+|..+...  .+..++||.|=
T Consensus       255 ~vi~~~~~~--~~~~~~iDLav  274 (414)
T PRK13940        255 YIVTCKYVG--DKPRVFIDISI  274 (414)
T ss_pred             eeECHHHhC--CCCeEEEEeCC
Confidence            445544432  12235555543

>PRK14030 glutamate dehydrogenase; Provisional

Probab=97.50  E-value=0.00087  Score=67.41  Aligned_cols=117  Identities=25%  Similarity=0.295  Sum_probs=80.4

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE--------EcCCC-CHHHH---H---------------hc-Ccccc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG--------FDPMV-SVEDA---A---------------KL-NIASL  144 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a---~---------------~~-gv~~~  144 (333)
                      |.++.|+|+.|=|+|++|+..|+.|..+|.+|++        ||+.- +.+..   .               .+ |.+.+
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            5679999999999999999999999999999999        88653 33221   0               11 33444


Q ss_pred             Chhhhcc-CCCEEEEecCCchhhHhhccHHHHhccC-CCcEE-EEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         145 GLEDIWP-LADYITVHTPLIPQTKNLINAEVLKKCK-KGVRV-VNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       145 ~l~ell~-~aDvV~l~~P~t~~t~~li~~~~~~~mk-~gail-IN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      +-++++. .||+++-|     .+.+.|+.+....+. .++.+ +-.+-+ ++..++- +.|++..|. ++=|+..+
T Consensus       303 ~~~~~~~~~cDVliPc-----Al~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI~-~vPD~~aN  370 (445)
T PRK14030        303 AGKKPWEQKVDIALPC-----ATQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQL-FAPGKAVN  370 (445)
T ss_pred             CCccceeccccEEeec-----cccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCCE-EeCcceec
Confidence            5555554 59988877     467889888877773 33444 444555 6655543 667776665 55565443

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.50  E-value=0.00041  Score=66.21  Aligned_cols=80  Identities=21%  Similarity=0.274  Sum_probs=66.8

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.++.+.            .++.+.+++||+|+.+++.    .+++.
T Consensus       155 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i~  218 (294)
T PRK14187        155 TRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFVK  218 (294)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence            568999999999995 589999999999999999988642            2578889999999999974    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   .|+|+++||++-..
T Consensus       219 ~~~---ik~gaiVIDVGin~  235 (294)
T PRK14187        219 YSW---IKKGAIVIDVGINS  235 (294)
T ss_pred             HHH---cCCCCEEEEecccc
Confidence            666   48999999997554

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.49  E-value=0.00041  Score=66.01  Aligned_cols=80  Identities=18%  Similarity=0.174  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..++.+.            .++.+..++||+|+.++..    .+++.
T Consensus       154 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvGk----p~~i~  217 (288)
T PRK14171        154 EPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIGS----PLKLT  217 (288)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----CCccC
Confidence            457999999999995 589999999999999999887532            2578889999999999973    46777


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   .|+|+++||++-..
T Consensus       218 ~~~---vk~GavVIDvGin~  234 (288)
T PRK14171        218 AEY---FNPESIVIDVGINR  234 (288)
T ss_pred             HHH---cCCCCEEEEeeccc
Confidence            766   58999999998543

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.49  E-value=0.00046  Score=66.00  Aligned_cols=80  Identities=23%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|+.++...            -++++.+++||+|+.++..    .+++.
T Consensus       162 ~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i~  225 (299)
T PLN02516        162 GIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMIK  225 (299)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCccC
Confidence            568999999999996 579999999999999999997632            2578899999999999864    36777


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   +|+|+++||++-..
T Consensus       226 ~~~---vk~gavVIDvGin~  242 (299)
T PLN02516        226 GDW---IKPGAAVIDVGTNA  242 (299)
T ss_pred             HHH---cCCCCEEEEeeccc
Confidence            766   58999999998554

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=97.47  E-value=0.00028  Score=57.42  Aligned_cols=102  Identities=22%  Similarity=0.290  Sum_probs=64.1

Q ss_pred             EEEEEecChHHHHHHHHHhhC--CCEEE-EEcCCCCH--HHHHhcCcccc-Chhhhcc--CCCEEEEecCCchhhHhhcc
Q psy6348         100 TLAVLGLGRIGREVALRMQAF--GMKVI-GFDPMVSV--EDAAKLNIASL-GLEDIWP--LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~~t~~li~  171 (333)
                      ++||||+|.+|+.....+...  +.++. ++|+....  ..++..|+... ++++++.  +.|+|++++|......  +-
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~--~~   79 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAE--IA   79 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHH--HH
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHH--HH
Confidence            799999999999998777765  56765 57886522  23455677644 7999998  7999999999533222  22


Q ss_pred             HHHHhccCCC-cEEEEc-cCCcccchHhHHhhhhcCC
Q psy6348         172 AEVLKKCKKG-VRVVNV-ARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       172 ~~~~~~mk~g-ailIN~-aRg~~vd~~aL~~aL~~g~  206 (333)
                      ...+   +.| .+++.- ---.+-+.+.|.++.++.+
T Consensus        80 ~~~l---~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~  113 (120)
T PF01408_consen   80 KKAL---EAGKHVLVEKPLALTLEEAEELVEAAKEKG  113 (120)
T ss_dssp             HHHH---HTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred             HHHH---HcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence            3333   333 344432 1223444555555555443

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.47  E-value=0.00031  Score=71.54  Aligned_cols=71  Identities=20%  Similarity=0.264  Sum_probs=52.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-H-HHHhcCccccChhhh--ccCCCEEEEecCCc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-E-DAAKLNIASLGLEDI--WPLADYITVHTPLI  163 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~a~~~gv~~~~l~el--l~~aDvV~l~~P~t  163 (333)
                      +.++.+++++|+|.|.+|++++..+...|++|+++++.... + .++..+....+++++  +.++|+|+.|+|..
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g  401 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS  401 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence            45678999999999999999999999999999999986522 1 222223222333332  57899999999953

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.45  E-value=0.00083  Score=64.91  Aligned_cols=117  Identities=21%  Similarity=0.224  Sum_probs=73.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCHHHHHhc---------Cc----cc-cChhhhccCCCEEEEec
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSVEDAAKL---------NI----AS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~---------gv----~~-~~l~ell~~aDvV~l~~  160 (333)
                      +..++|+|||.|.||..+|..+...| .++..||.......+..+         +.    .. .+++ .+++||+|+++.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45679999999999999999988878 689999986532212111         11    11 1444 779999999998


Q ss_pred             --CCch-hhH--------hhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhhh--cCCceEEE--ec
Q psy6348         161 --PLIP-QTK--------NLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSLK--CGHCGGAA--LD  213 (333)
Q Consensus       161 --P~t~-~t~--------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~--~g~i~gaa--lD  213 (333)
                        |..+ .++        .++.  .+.+....|.+++|+++-..-+-...+.+.-.  ..++.|.+  +|
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence              4433 111        1110  12334456788999987654444444544432  45676665  55

>PLN02477 glutamate dehydrogenase

Probab=97.45  E-value=0.0044  Score=61.91  Aligned_cols=116  Identities=19%  Similarity=0.231  Sum_probs=77.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE-cCC-------C-CHHHHHh----c-------CccccChhhhc-c
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF-DPM-------V-SVEDAAK----L-------NIASLGLEDIW-P  151 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~-------~-~~~~a~~----~-------gv~~~~l~ell-~  151 (333)
                      |.++.|+|+.|.|||++|+.+|+.|...|.+|++. |.+       - +.+...+    .       +.+.++.++++ .
T Consensus       201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~  280 (410)
T PLN02477        201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE  280 (410)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence            55789999999999999999999999999999953 432       1 2222211    1       12233444443 4


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      +||+++-|.     ..+.|+.+...+++- .+++-.+-+.+  +.+--+.|++..|. ++=|+.-+
T Consensus       281 ~~DvliP~A-----l~~~I~~~na~~i~a-k~I~egAN~p~--t~ea~~~L~~rGI~-~~PD~~aN  337 (410)
T PLN02477        281 PCDVLIPAA-----LGGVINKENAADVKA-KFIVEAANHPT--DPEADEILRKKGVV-VLPDIYAN  337 (410)
T ss_pred             cccEEeecc-----ccccCCHhHHHHcCC-cEEEeCCCCCC--CHHHHHHHHHCCcE-EEChHHhC
Confidence            799998773     567888888888753 46666666766  33445777777765 55555433

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.45  E-value=0.00054  Score=65.00  Aligned_cols=80  Identities=19%  Similarity=0.185  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|..|..++.+.            .++.+..++||+|+.+++.    .+++.
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i~  215 (282)
T PRK14182        152 RVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELVK  215 (282)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCccC
Confidence            567999999999995 589999999999999999987642            2577888999999999973    55777


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   .|+|+++||++-..
T Consensus       216 ~~~---ik~gaiVIDvGin~  232 (282)
T PRK14182        216 GAW---VKEGAVVIDVGMNR  232 (282)
T ss_pred             HHH---cCCCCEEEEeecee
Confidence            766   58999999998554

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.45  E-value=0.00051  Score=65.25  Aligned_cols=110  Identities=25%  Similarity=0.299  Sum_probs=81.2

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhh
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQA--FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      +.++.||++.|||-+ .+|+.+|..|..  .++.|..+....            .++.+.+++||+|+.+++.    .++
T Consensus       153 ~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGk----p~~  216 (284)
T PRK14193        153 DVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGV----AHL  216 (284)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCC----cCc
Confidence            568999999999985 689999999987  789999987632            2578889999999999974    357


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcH
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTK  245 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~  245 (333)
                      +..+.   +|+|+++||++...+          .+|++.|   ||- .+ ..        ... -.+||--||.-.
T Consensus       217 i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~-v~--------~~a-~~iTPVPGGVGp  265 (284)
T PRK14193        217 VTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-VW--------EVA-GAVSPNPGGVGP  265 (284)
T ss_pred             cCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-Hh-HH--------hhC-CEEeCCCCChhH
Confidence            77766   589999999986653          2455543   664 11 11        111 268998777544

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.45  E-value=0.00056  Score=56.29  Aligned_cols=87  Identities=18%  Similarity=0.321  Sum_probs=54.7

Q ss_pred             EEEEEec-ChHHHHHHHHHhhC-CCEEEEE-cCCC-CHHHHHhcC--cc-----ccChhhhc-cCCCEEEEecCCchhhH
Q psy6348         100 TLAVLGL-GRIGREVALRMQAF-GMKVIGF-DPMV-SVEDAAKLN--IA-----SLGLEDIW-PLADYITVHTPLIPQTK  167 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~-G~~V~~~-d~~~-~~~~a~~~g--v~-----~~~l~ell-~~aDvV~l~~P~t~~t~  167 (333)
                      ++||+|. |.+|+.++..+... ++++.+. ++.. ........+  +.     ..+.+++. .++|+|++|+|... +.
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~-~~   79 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGV-SK   79 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHH-HH
Confidence            5899995 99999999988874 7887776 4322 111222111  11     11222222 58999999999643 33


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                      ..+. .....+++|.++|+++
T Consensus        80 ~~~~-~~~~~~~~g~~viD~s   99 (122)
T smart00859       80 EIAP-LLPKAAEAGVKVIDLS   99 (122)
T ss_pred             HHHH-HHHhhhcCCCEEEECC
Confidence            3332 2345579999999996

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.44  E-value=0.00046  Score=67.35  Aligned_cols=80  Identities=25%  Similarity=0.239  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|..|..+....            .++.+.+++||+|+.++..    .+++.
T Consensus       226 ~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvGk----p~~i~  289 (364)
T PLN02616        226 NVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVGQ----PNMVR  289 (364)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcCC
Confidence            568999999999995 589999999999999999987532            2578889999999999963    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   .|+|+++||++-..
T Consensus       290 ~d~---vK~GAvVIDVGIn~  306 (364)
T PLN02616        290 GSW---IKPGAVVIDVGINP  306 (364)
T ss_pred             HHH---cCCCCEEEeccccc
Confidence            766   58999999998544

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.42  E-value=0.00049  Score=66.81  Aligned_cols=80  Identities=25%  Similarity=0.331  Sum_probs=66.5

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||-+ .+|+.+|..|...|+.|..+..+.            -++++..++||+|+.+++.    .+++.
T Consensus       209 ~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v~  272 (345)
T PLN02897        209 GVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLVR  272 (345)
T ss_pred             CCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCccC
Confidence            568999999999996 579999999999999999887542            2477889999999999974    45677


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   +|+|+++||++--.
T Consensus       273 ~d~---vk~GavVIDVGin~  289 (345)
T PLN02897        273 GSW---LKPGAVVIDVGTTP  289 (345)
T ss_pred             HHH---cCCCCEEEEccccc
Confidence            666   58999999998654

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=97.42  E-value=0.00068  Score=58.94  Aligned_cols=69  Identities=23%  Similarity=0.178  Sum_probs=52.1

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC-cccc--Ch-hhhccCCCEEEEecCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN-IASL--GL-EDIWPLADYITVHTPL  162 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g-v~~~--~l-~ell~~aDvV~l~~P~  162 (333)
                      ..+|.|+++.|||.|.+|...++.|...|.+|.+++|....+.. +++ +++.  .+ ++-+.++|+|+.++..
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~d   80 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATNQ   80 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCCC
Confidence            46899999999999999999999999999999999987655432 232 2221  22 2346789999888763

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.42  E-value=0.00061  Score=64.80  Aligned_cols=80  Identities=20%  Similarity=0.258  Sum_probs=65.9

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      +.++.||++.|||-+ .+|+.+|..|...    +..|..+....            .++.+.+++||+|+.+++.    .
T Consensus       148 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~----p  211 (287)
T PRK14181        148 EIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV----P  211 (287)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence            568999999999996 5899999999887    78999887532            2578889999999999974    3


Q ss_pred             hhccHHHHhccCCCcEEEEccCCc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      +++..+.   +|+|+++||++-..
T Consensus       212 ~~i~~~~---ik~GavVIDvGin~  232 (287)
T PRK14181        212 LFIKEEM---IAEKAVIVDVGTSR  232 (287)
T ss_pred             CccCHHH---cCCCCEEEEecccc
Confidence            5677766   58999999998655

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.39  E-value=0.00066  Score=65.99  Aligned_cols=85  Identities=31%  Similarity=0.336  Sum_probs=61.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-C------hhhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-G------LEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~------l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .|++|+|+|+|-.|..-.+.++++|++|+++|+.. ..+.++++|...+ +      ++++-+.+|+++.++| . .+- 
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~-~~~-  242 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-P-ATL-  242 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-h-hhH-
Confidence            48999999999999999999999999999999987 4567788876432 1      1223333888888887 2 222 


Q ss_pred             hccHHHHhccCCCcEEEEc
Q psy6348         169 LINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~  187 (333)
                         ...++.++++..++-+
T Consensus       243 ---~~~l~~l~~~G~~v~v  258 (339)
T COG1064         243 ---EPSLKALRRGGTLVLV  258 (339)
T ss_pred             ---HHHHHHHhcCCEEEEE
Confidence               3455667777666644

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.37  E-value=0.00078  Score=65.26  Aligned_cols=86  Identities=19%  Similarity=0.144  Sum_probs=62.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHh-hCCC-EEEEEcCCCCH--HHHHh----cCccc---cChhhhccCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQ-AFGM-KVIGFDPMVSV--EDAAK----LNIAS---LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~gv~~---~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ..++++|||.|.+|+..++.+. ..+. +|.+|+|+...  +.+++    .|+..   .++++.+.+||+|+.++|..  
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~--  205 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE--  205 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence            3579999999999999999886 4674 69999997633  22222    24433   26888999999999999853  


Q ss_pred             hHhhccHHHHhccCCCcEEEEcc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~a  188 (333)
                       ..++..+.   +|+|+.+..++
T Consensus       206 -~p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       206 -TPILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             -CcEecHHH---cCCCcEEEeeC
Confidence             35665544   68998877665

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.36  E-value=0.0011  Score=62.31  Aligned_cols=101  Identities=20%  Similarity=0.222  Sum_probs=63.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhC---CCEEE-EEcCCCCHHHHHhcCcccc-Chhhh-ccCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF---GMKVI-GFDPMVSVEDAAKLNIASL-GLEDI-WPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~---G~~V~-~~d~~~~~~~a~~~gv~~~-~l~el-l~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      +||||||||.||+.+++.+..-   ++++. +|++...........+..+ +++++ ..+.|+|+=|..-  +   .+-+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~--~---av~e   77 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQ--Q---AIAE   77 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCH--H---HHHH
Confidence            5899999999999999988652   35544 4666442211111123444 69997 5789999988752  2   1222


Q ss_pred             HHHhccCCCcEEEEccCCcccc---hHhHHhhhhc
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVD---ENALLDSLKC  204 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd---~~aL~~aL~~  204 (333)
                      --.+-++.|.-++=.|-|.+.|   ++.|.++.++
T Consensus        78 ~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         78 HAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             HHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            2223356677777778888887   4445555544

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.36  E-value=0.00042  Score=65.43  Aligned_cols=114  Identities=25%  Similarity=0.307  Sum_probs=83.4

Q ss_pred             CccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+.+++||++.|||-++ +|+.+|..|...++.|.+++.+.            .++.+..++||+|+.++-.    .+++
T Consensus       150 ~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG~----p~~i  213 (283)
T COG0190         150 YGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVGK----PHFI  213 (283)
T ss_pred             hCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecCC----cccc
Confidence            35689999999999986 69999999999999999988743            2577888999999999853    5666


Q ss_pred             cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHH
Q psy6348         171 NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA  247 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea  247 (333)
                      ..+.   .|+|+++|+++--.+-+          +++.   =||-.++.          ....-.+||=-||.-.=.
T Consensus       214 ~~d~---vk~gavVIDVGinrv~~----------~kl~---GDVdf~~v----------~~~a~~iTPVPGGVGPmT  264 (283)
T COG0190         214 KADM---VKPGAVVIDVGINRVND----------GKLV---GDVDFDSV----------KEKASAITPVPGGVGPMT  264 (283)
T ss_pred             cccc---ccCCCEEEecCCccccC----------CceE---eeccHHHH----------HHhhcccCCCCCccCHHH
Confidence            6554   58999999997665433          5554   46622221          122346889888765533

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.34  E-value=0.00078  Score=64.40  Aligned_cols=80  Identities=21%  Similarity=0.220  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhh----CCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQA----FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      +.++.||++.|||-+ .+|+.+|..|..    .|..|..+....            .++.+.+++||+|+.+++..    
T Consensus       154 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~----  217 (295)
T PRK14174        154 NIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA----  217 (295)
T ss_pred             CCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc----
Confidence            568999999999995 589999999876    588988877532            24788899999999999632    


Q ss_pred             hhccHHHHhccCCCcEEEEccCCc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      ++|..+.+   |+|+++||++-..
T Consensus       218 ~li~~~~v---k~GavVIDVgi~~  238 (295)
T PRK14174        218 RFITADMV---KPGAVVIDVGINR  238 (295)
T ss_pred             CccCHHHc---CCCCEEEEeeccc
Confidence            67888776   9999999997544

>PRK06444 prephenate dehydrogenase; Provisional

Probab=97.31  E-value=0.00068  Score=61.18  Aligned_cols=61  Identities=21%  Similarity=0.302  Sum_probs=47.3

Q ss_pred             EEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhcc
Q psy6348         100 TLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC  178 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~m  178 (333)
                      +++|||- |.||+.++..+++.|+.|.                        +++||+|++|+|. ..+..++.     .+
T Consensus         2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv-~~~~~~i~-----~~   51 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPI-DAALNYIE-----SY   51 (197)
T ss_pred             EEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCH-HHHHHHHH-----Hh
Confidence            7999998 9999999999999999985                        3689999999994 34444442     22


Q ss_pred             CCCcEEEEccCCcc
Q psy6348         179 KKGVRVVNVARGGI  192 (333)
Q Consensus       179 k~gailIN~aRg~~  192 (333)
                      .  .++++++.-+-
T Consensus        52 ~--~~v~Dv~SvK~   63 (197)
T PRK06444         52 D--NNFVEISSVKW   63 (197)
T ss_pred             C--CeEEeccccCH
Confidence            2  37889977443

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=97.31  E-value=0.00083  Score=62.60  Aligned_cols=115  Identities=23%  Similarity=0.286  Sum_probs=77.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE--------cCCC-CHHHHH----hcCc--cc-----------cChh
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF--------DPMV-SVEDAA----KLNI--AS-----------LGLE  147 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~a~----~~gv--~~-----------~~l~  147 (333)
                      .++.|+++.|-|+|++|+.+|+.|...|++|++.        ||.- ..+...    +.+.  ..           .+-+
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~  107 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND  107 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence            3699999999999999999999999999999875        6543 222221    2222  11           1221


Q ss_pred             -hhc-cCCCEEEEecCCchhhHhhccHHHHh-ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccC
Q psy6348         148 -DIW-PLADYITVHTPLIPQTKNLINAEVLK-KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF  215 (333)
Q Consensus       148 -ell-~~aDvV~l~~P~t~~t~~li~~~~~~-~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~  215 (333)
                       +++ .+||+++.|.     ..+.|+.+... .++.++.+|--+-...+..++.. .|++..|. ..=|..
T Consensus       108 ~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t~~a~~-~L~~rGI~-viPD~~  171 (244)
T PF00208_consen  108 DEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLTPEADE-ILRERGIL-VIPDFL  171 (244)
T ss_dssp             CHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBSHHHHH-HHHHTT-E-EE-HHH
T ss_pred             cccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhccHHHHH-HHHHCCCE-EEcchh
Confidence             555 5799999984     36778888887 88877766666655555666655 77777775 555553

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.30  E-value=0.00097  Score=63.60  Aligned_cols=80  Identities=24%  Similarity=0.238  Sum_probs=64.9

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      +.++.||++.|||-+ .+|+.+|..|...    +..|..+....            .++.+..++||+|+.+++.    .
T Consensus       152 ~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk----p  215 (293)
T PRK14185        152 HIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ----P  215 (293)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence            567999999999995 5899999999876    68999886532            2578889999999999974    4


Q ss_pred             hhccHHHHhccCCCcEEEEccCCc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      +++..+.   .|+|+++||++-..
T Consensus       216 ~~i~~~~---vk~gavVIDvGin~  236 (293)
T PRK14185        216 EFVKADM---VKEGAVVIDVGTTR  236 (293)
T ss_pred             CccCHHH---cCCCCEEEEecCcc
Confidence            5676655   58999999998654

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.29  E-value=0.00095  Score=63.81  Aligned_cols=80  Identities=25%  Similarity=0.297  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      +.++.||++.|||-+ .+|+.+|..|...    +..|..+....            .++.+.+++||+|+.++..    .
T Consensus       156 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvGk----p  219 (297)
T PRK14168        156 GVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAGV----P  219 (297)
T ss_pred             CCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecCC----c
Confidence            678999999999995 6899999999876    78998876532            2577889999999999863    4


Q ss_pred             hhccHHHHhccCCCcEEEEccCCc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      +++..+.   +|+|+++||++-..
T Consensus       220 ~~i~~~~---ik~gavVIDvGin~  240 (297)
T PRK14168        220 NLVKPEW---IKPGATVIDVGVNR  240 (297)
T ss_pred             CccCHHH---cCCCCEEEecCCCc
Confidence            5677665   58999999998655

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.28  E-value=0.00092  Score=65.05  Aligned_cols=95  Identities=14%  Similarity=0.013  Sum_probs=61.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      .+.||++.|||.|.||+.+|+.|...|. +|++.+|+.........   ....-++..++|+|+.+.-.|....-.+..+
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~---~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~  247 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTV---VREELSFQDPYDVIFFGSSESAYAFPHLSWE  247 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhh---hhhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence            4789999999999999999999999995 69999997632111110   0011144578999998743233333445555


Q ss_pred             HHhccCCCcEEEEccCCccc
Q psy6348         174 VLKKCKKGVRVVNVARGGIV  193 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~v  193 (333)
                      .++..++ -++||.+=..=|
T Consensus       248 ~~~~~~~-r~~iDLAvPRdI  266 (338)
T PRK00676        248 SLADIPD-RIVFDFNVPRTF  266 (338)
T ss_pred             HHhhccC-cEEEEecCCCCC
Confidence            5544332 377777544433

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.28  E-value=0.0014  Score=63.32  Aligned_cols=88  Identities=17%  Similarity=0.241  Sum_probs=64.7

Q ss_pred             CCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCCHHH-----HHhcCccc--c-ChhhhccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVSVED-----AAKLNIAS--L-GLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~-----a~~~gv~~--~-~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      -++++|||.|..++..++.+.. +. -+|.+|+|+.....     .++.++..  + +.++++++||+|+.++|   .+.
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~---s~~  204 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTP---SRE  204 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecC---CCC
Confidence            4699999999999998877654 23 38999999873321     12224433  3 68999999999999987   445


Q ss_pred             hhccHHHHhccCCCcEEEEccCCc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      -++..+.   +|+|+.++.++.-.
T Consensus       205 P~~~~~~---l~~G~hi~~iGs~~  225 (315)
T PRK06823        205 PLLQAED---IQPGTHITAVGADS  225 (315)
T ss_pred             ceeCHHH---cCCCcEEEecCCCC
Confidence            6776654   68999999998543

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.27  E-value=0.00094  Score=64.65  Aligned_cols=87  Identities=22%  Similarity=0.193  Sum_probs=63.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHh-hCCC-EEEEEcCCCCH--HHHH----hcCcc---ccChhhhccCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQ-AFGM-KVIGFDPMVSV--EDAA----KLNIA---SLGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~----~~gv~---~~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ..++++|||.|.+|+..+..+. ..+. +|.+||++...  +.++    +.+++   +.+++++++++|+|+.++|..  
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~--  203 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK--  203 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence            4679999999999999887664 4454 78899997632  1222    23443   236889999999999999844  


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                       .-++.    +.+|+|+.++.++.-
T Consensus       204 -~p~i~----~~l~~G~hV~~iGs~  223 (325)
T PRK08618        204 -TPVFS----EKLKKGVHINAVGSF  223 (325)
T ss_pred             -CcchH----HhcCCCcEEEecCCC
Confidence             34554    456999999999764

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.25  E-value=0.00099  Score=63.38  Aligned_cols=79  Identities=25%  Similarity=0.320  Sum_probs=65.4

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhh----CCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQA----FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      +.++.||++.|||-+ .+|+.+|..|..    .+..|..++...            .++.+.+++||+|+.+++.    .
T Consensus       152 ~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG~----p  215 (286)
T PRK14184        152 GLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIGR----P  215 (286)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCC----C
Confidence            568999999999995 589999999988    789999887532            2578899999999999953    5


Q ss_pred             hhccHHHHhccCCCcEEEEccCC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg  190 (333)
                      +++..+.+   |+|+++||++-.
T Consensus       216 ~li~~~~v---k~GavVIDVGi~  235 (286)
T PRK14184        216 RFVTADMV---KPGAVVVDVGIN  235 (286)
T ss_pred             CcCCHHHc---CCCCEEEEeeee
Confidence            66777665   999999999743

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.25  E-value=0.0012  Score=62.82  Aligned_cols=69  Identities=25%  Similarity=0.265  Sum_probs=50.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHH--HHHhcC-----cccc---ChhhhccCCCEEEEecCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVE--DAAKLN-----IASL---GLEDIWPLADYITVHTPL  162 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g-----v~~~---~l~ell~~aDvV~l~~P~  162 (333)
                      ..+.++++.|+|.|.+|++++..|...|. +|+++||.....  .+++++     ....   ++.+.++++|+|+.++|.
T Consensus       123 ~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~  202 (284)
T PRK12549        123 PDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPT  202 (284)
T ss_pred             cCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcC
Confidence            35778999999999999999999999998 799999975321  222221     1111   334567789999999884

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.25  E-value=0.00076  Score=65.00  Aligned_cols=90  Identities=23%  Similarity=0.208  Sum_probs=53.8

Q ss_pred             CEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH-H-HH---HhcCccc--c-ChhhhccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV-E-DA---AKLNIAS--L-GLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a---~~~gv~~--~-~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      +++||||.|..+..-++.+.+ ++. +|.+|+|+... + .+   .++++..  + +.++++++||+|+.++|.+..+ -
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P  207 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P  207 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence            589999999999999887754 555 79999997622 1 11   2234432  2 7999999999999998854322 5


Q ss_pred             hccHHHHhccCCCcEEEEccCCcc
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      ++..+   .+|+|+.++.++....
T Consensus       208 ~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  208 VFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             SB-GG---GS-TT-EEEE-S-SST
T ss_pred             cccHH---HcCCCcEEEEecCCCC
Confidence            66554   4789999999987544

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.22  E-value=0.0015  Score=63.43  Aligned_cols=86  Identities=23%  Similarity=0.206  Sum_probs=61.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCCH-H-HHH----hcCccc---cChhhhccCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVSV-E-DAA----KLNIAS---LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~-~-~a~----~~gv~~---~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ..++++|||.|.+|+..+..+.. .+ -+|.+|+|+... + .++    ..|+..   .++++++.+||+|+.++|..  
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~--  208 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE--  208 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence            35799999999999998887774 55 479999997632 1 222    124442   36889999999999998853  


Q ss_pred             hHhhccHHHHhccCCCcEEEEcc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~a  188 (333)
                       .-++..+.   +++|+.+..++
T Consensus       209 -~p~i~~~~---l~~g~~v~~vg  227 (330)
T PRK08291        209 -EPILKAEW---LHPGLHVTAMG  227 (330)
T ss_pred             -CcEecHHH---cCCCceEEeeC
Confidence             35565543   57887766654

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.22  E-value=0.002  Score=60.63  Aligned_cols=104  Identities=19%  Similarity=0.275  Sum_probs=62.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEEE-EcCCCCHHH-HHhc--Cccc-cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVIG-FDPMVSVED-AAKL--NIAS-LGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~-a~~~--gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .+|||||+|+||+.+++.+... ++++.+ +++....+. ....  ++.. .+++++-.+.|+|+.|.|.... .    +
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~----e   76 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-K----E   76 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-H----H
Confidence            4899999999999999988765 566544 344333222 1222  3333 3688775569999999984322 1    2


Q ss_pred             HHHhccCCCcEEEEccCCcccch---HhHHhhhhcCCc
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDE---NALLDSLKCGHC  207 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~---~aL~~aL~~g~i  207 (333)
                      -....++.|.-++-.+-|...|.   +.|.++.+++..
T Consensus        77 ~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~  114 (265)
T PRK13303         77 HVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA  114 (265)
T ss_pred             HHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence            22333455655665555544443   446666655544

>PRK06046 alanine dehydrogenase; Validated

Probab=97.21  E-value=0.0012  Score=64.07  Aligned_cols=87  Identities=22%  Similarity=0.357  Sum_probs=62.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH-H-HHHh----cCc--cc-cChhhhccCCCEEEEecCCchhh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV-E-DAAK----LNI--AS-LGLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a~~----~gv--~~-~~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      -+++||||.|.+|+..++.+.. .+. +|.+||++... + .+++    .++  .. .+++++++ +|+|++++|.+   
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---  204 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---  204 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence            4699999999999999987764 454 67789997632 2 2222    243  22 37888887 99999999853   


Q ss_pred             HhhccHHHHhccCCCcEEEEccCCc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      .-++..+.   +|+|+.+..++.-.
T Consensus       205 ~P~~~~~~---l~~g~hV~~iGs~~  226 (326)
T PRK06046        205 KPVVKAEW---IKEGTHINAIGADA  226 (326)
T ss_pred             CcEecHHH---cCCCCEEEecCCCC
Confidence            46666654   58999988887543

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.21  E-value=0.00086  Score=67.76  Aligned_cols=109  Identities=20%  Similarity=0.199  Sum_probs=71.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH------HHHHhcCcccc---ChhhhccCCCEEEEecCCchh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV------EDAAKLNIASL---GLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~  165 (333)
                      -+.+++++|+|+|..|.++|+.|+..|++|.++|.....      +..++.|+...   ...+.+.++|+|+.. |.-+.
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~   89 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI   89 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence            366899999999999999999999999999999976421      23445576553   234556889999887 53332


Q ss_pred             hHhh-----------ccHH-HH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         166 TKNL-----------INAE-VL-KKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       166 t~~l-----------i~~~-~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      +.-.           +++- .+ ...+...+-|--+.|+--...-+...|+.
T Consensus        90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~  141 (458)
T PRK01710         90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE  141 (458)
T ss_pred             CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            2221           1211 22 22232345555566777777777777764

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.20  E-value=0.0013  Score=63.01  Aligned_cols=80  Identities=19%  Similarity=0.236  Sum_probs=64.7

Q ss_pred             ccccCCCEEEEEecC-hHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhH
Q psy6348          93 GTELYGKTLAVLGLG-RIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        93 g~~l~gktvGIIGlG-~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      +.++.||++.|||-+ .+|+.+|..|...    +..|..+....            .++.+..++||+|+.++..    .
T Consensus       152 ~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGk----p  215 (297)
T PRK14167        152 GVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGV----P  215 (297)
T ss_pred             CCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----c
Confidence            567999999999995 5899999999865    88999886532            2578889999999999853    4


Q ss_pred             hhccHHHHhccCCCcEEEEccCCc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      +++..+.   +|+|+++||++-..
T Consensus       216 ~~i~~~~---ik~gaiVIDvGin~  236 (297)
T PRK14167        216 ELIDGSM---LSEGATVIDVGINR  236 (297)
T ss_pred             CccCHHH---cCCCCEEEEccccc
Confidence            5777655   58999999998554

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.20  E-value=0.0015  Score=59.82  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=61.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--CC-EEEEEcCCCCHHHH--HhcCccc-cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--GM-KVIGFDPMVSVEDA--AKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--G~-~V~~~d~~~~~~~a--~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .+|||||+|.||+.+.+.++.-  .. .+.+||+.......  +..+-.. .+++|++++.|+++=|..  ++.-.   +
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS--~~Av~---e   75 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS--PEAVR---E   75 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC--HHHHH---H
Confidence            3799999999999999988742  34 47789997644322  2333322 379999999999998864  22222   2


Q ss_pred             HHHhccCCCcEEEEccCCcccchH
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDEN  196 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~  196 (333)
                      -..+.+|.|.-+|-+|-|.+.|+.
T Consensus        76 ~~~~~L~~g~d~iV~SVGALad~~   99 (255)
T COG1712          76 YVPKILKAGIDVIVMSVGALADEG   99 (255)
T ss_pred             HhHHHHhcCCCEEEEechhccChH
Confidence            223345666666667777777544

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.15  E-value=0.0018  Score=64.06  Aligned_cols=108  Identities=23%  Similarity=0.258  Sum_probs=75.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC------------------H--HHHHhcCccccChhhhcc-
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS------------------V--EDAAKLNIASLGLEDIWP-  151 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~------------------~--~~a~~~gv~~~~l~ell~-  151 (333)
                      +.+|.|+||.|=|+|++|+-.|+.|...|.+|+++|.+..                  .  ......|.+.++-++++. 
T Consensus       202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~  281 (411)
T COG0334         202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV  281 (411)
T ss_pred             CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence            4458999999999999999999999999999999865433                  0  111222445555577665 


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      .||+.+-|     .+.+.|+.+...++|-. +++-.+-|..- .++--.-++.|-+
T Consensus       282 ~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t-~eA~~i~~erGIl  330 (411)
T COG0334         282 DCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTT-PEADEILLERGIL  330 (411)
T ss_pred             cCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCC-HHHHHHHHHCCCE
Confidence            69988866     56888999988888876 66666666654 3333333344433

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=97.14  E-value=0.0016  Score=60.92  Aligned_cols=115  Identities=16%  Similarity=0.228  Sum_probs=71.7

Q ss_pred             EEEEec-ChHHHHHHHHHhhCC----CEEEEEcCCCCHHH--HH---h----c-C--cccc-ChhhhccCCCEEEEecCC
Q psy6348         101 LAVLGL-GRIGREVALRMQAFG----MKVIGFDPMVSVED--AA---K----L-N--IASL-GLEDIWPLADYITVHTPL  162 (333)
Q Consensus       101 vGIIGl-G~IG~~vA~~l~~~G----~~V~~~d~~~~~~~--a~---~----~-g--v~~~-~l~ell~~aDvV~l~~P~  162 (333)
                      |+|||. |.+|..+|..+...|    .+|..||.......  ..   +    . .  +... ++.+.+++||+|+++.-.
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~   80 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV   80 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence            589999 999999999988777    79999997652211  11   1    1 1  1111 457889999999995421


Q ss_pred             --ch---------hhHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE-eccC
Q psy6348         163 --IP---------QTKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA-LDVF  215 (333)
Q Consensus       163 --t~---------~t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa-lDV~  215 (333)
                        .+         .+..++.  .+.+....|++++||.+-.-=+-...+.+.  +...++.|.+ +|..
T Consensus        81 ~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~~  149 (263)
T cd00650          81 GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDPI  149 (263)
T ss_pred             CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchHH
Confidence              10         1111121  123344458899999964333334445555  5667888888 7753

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.13  E-value=0.0028  Score=63.22  Aligned_cols=90  Identities=29%  Similarity=0.352  Sum_probs=63.8

Q ss_pred             ccCCCEEEEEec----------ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCch
Q psy6348          95 ELYGKTLAVLGL----------GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        95 ~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~  164 (333)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+|||....+..+..+. ..++++.+++||+|+++++- +
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~~-~~~~~~~~~~ad~~v~~t~~-~  387 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLPL-IDDLEEALKGADALVILTDH-D  387 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhccc-CCCHHHHHhCCCEEEEecCC-H
Confidence            368999999998          34677899999999999999999875543332221 24788999999999999873 4


Q ss_pred             hhHhhccHHHHhccCCCcEEEEc
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~  187 (333)
                      +-+.+-.+.....|+ ..+++++
T Consensus       388 ~~~~~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       388 EFKDLDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HHhccCHHHHHHhcC-CCEEEeC
Confidence            444332233334455 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.12  E-value=0.002  Score=63.74  Aligned_cols=101  Identities=21%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCC-CHHHHHhcC---ccc--------cChhhhccCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMV-SVEDAAKLN---IAS--------LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~g---v~~--------~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      +++.|||+|.||+.+|..|.+.| .+|++-||+. +..++....   ++.        -.+.+++++.|+|+.++|..-.
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~   81 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVD   81 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhh
Confidence            68999999999999999999988 8999999976 333333332   221        1467889999999999984322


Q ss_pred             hHhhccHHHH-hccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         166 TKNLINAEVL-KKCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       166 t~~li~~~~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                            ...+ +.++.|.-.++++-....- -++.+..++..
T Consensus        82 ------~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~Ag  116 (389)
T COG1748          82 ------LTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKKAG  116 (389)
T ss_pred             ------HHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHHcC
Confidence                  1222 4467778888887655442 33433333333

>KOG2304|consensus

Probab=97.11  E-value=0.0004  Score=63.60  Aligned_cols=143  Identities=20%  Similarity=0.137  Sum_probs=87.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------cCc------------------c-c
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------LNI------------------A-S  143 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~gv------------------~-~  143 (333)
                      ...-+.|+|||.|.||+.+|+.+...|++|+.+|...+. .++.+           .+.                  + .
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            344578999999999999999999999999999986522 11110           000                  0 0


Q ss_pred             cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCc
Q psy6348         144 LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSE  223 (333)
Q Consensus       144 ~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~  223 (333)
                      .++.++++.+|+|+=++-.+.+.+.-+-++.-...|+.++|..-  -+-+...+++.+++.... .++|..|.+-|.-  
T Consensus        88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tN--TSSl~lt~ia~~~~~~sr-f~GlHFfNPvPvM--  162 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATN--TSSLSLTDIASATQRPSR-FAGLHFFNPVPVM--  162 (298)
T ss_pred             CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeec--ccceeHHHHHhhccChhh-hceeeccCCchhH--
Confidence            14556677788777555433333333333333446777776533  223556677778775544 5899998876532  


Q ss_pred             cchhhcCCCcEEEccCCCCCcHHHH
Q psy6348         224 QTFELIKHPKVIVTPHLGASTKEAQ  248 (333)
Q Consensus       224 ~~~~L~~~pnvi~TPHi~~~t~ea~  248 (333)
                         .|.   .||=|+..+--|.++.
T Consensus       163 ---KLv---EVir~~~TS~eTf~~l  181 (298)
T KOG2304|consen  163 ---KLV---EVIRTDDTSDETFNAL  181 (298)
T ss_pred             ---HHh---hhhcCCCCCHHHHHHH
Confidence               233   3666666444343333

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=97.09  E-value=0.0045  Score=62.36  Aligned_cols=118  Identities=20%  Similarity=0.149  Sum_probs=78.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE-EcCC-------C-CHHHH------H--------h-----cCcccc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-FDPM-------V-SVEDA------A--------K-----LNIASL  144 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a------~--------~-----~gv~~~  144 (333)
                      +.++.|||+.|=|+|++|+..|+.|..+|.+|++ .|..       - +.+..      +        .     .+.+++
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~  311 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV  311 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence            4578999999999999999999999999999994 3433       1 12111      0        0     023334


Q ss_pred             Chhhhc-cCCCEEEEecCCchhhHhhccHHHHhcc-CCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         145 GLEDIW-PLADYITVHTPLIPQTKNLINAEVLKKC-KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       145 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~m-k~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      +-++++ -.||+.+-|     .+.+.|+.+..+.+ +.++.+|--+-......+ -.+.|++..|. ++=|...+
T Consensus       312 ~~~~~~~~~cDI~iPc-----A~~n~I~~~~a~~l~~~~ak~V~EgAN~p~t~e-A~~~L~~~GI~-~~PD~~aN  379 (454)
T PTZ00079        312 PGKKPWEVPCDIAFPC-----ATQNEINLEDAKLLIKNGCKLVAEGANMPTTIE-ATHLFKKNGVI-FCPGKAAN  379 (454)
T ss_pred             CCcCcccCCccEEEec-----cccccCCHHHHHHHHHcCCeEEEecCCCCCCHH-HHHHHHHCCcE-EEChhhhc
Confidence            444444 469988877     46788888877766 666777766665555554 44666666664 45555433

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.07  E-value=0.0053  Score=59.22  Aligned_cols=106  Identities=15%  Similarity=0.052  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhhCCCEEEEEcCCCCH--------HHH-----------HhcC-------------cccc-C--hhhhccCC
Q psy6348         109 IGREVALRMQAFGMKVIGFDPMVSV--------EDA-----------AKLN-------------IASL-G--LEDIWPLA  153 (333)
Q Consensus       109 IG~~vA~~l~~~G~~V~~~d~~~~~--------~~a-----------~~~g-------------v~~~-~--l~ell~~a  153 (333)
                      ||..+|..+...|++|..||+....        +.+           .+.|             ++.. +  +.+.+++|
T Consensus         1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a   80 (314)
T PRK08269          1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA   80 (314)
T ss_pred             CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence            6899999999999999999997731        111           1111             1122 2  44788999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      |+|+-++|...+.+..+-.+..+.++++++|  ++.-+.+....|.+.++. +=+..++..|.+
T Consensus        81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~il--aSntS~~~~~~la~~~~~-p~r~~g~Hf~~P  141 (314)
T PRK08269         81 DLVFEAVPEVLDAKREALRWLGRHVDADAII--ASTTSTFLVTDLQRHVAH-PERFLNAHWLNP  141 (314)
T ss_pred             CEEEECCcCCHHHHHHHHHHHHhhCCCCcEE--EEccccCCHHHHHhhcCC-cccEEEEecCCc
Confidence            9999999999999998888888889999999  445555677778877742 222355655543

>KOG0023|consensus

Probab=97.07  E-value=0.0013  Score=63.19  Aligned_cols=88  Identities=20%  Similarity=0.233  Sum_probs=57.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CH-HHHHhcCcccc--C------hhhhccCCCEEEEecCCchhh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SV-EDAAKLNIASL--G------LEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~-~~a~~~gv~~~--~------l~ell~~aDvV~l~~P~t~~t  166 (333)
                      .|+.+||+|+|-+|+.-.+.++++||+|++.|+.. +. +..+.+|.+..  +      .+++...-|.++-+++.-  .
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~--a  258 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNL--A  258 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeec--c
Confidence            79999999999999999999999999999999875 33 44455776431  1      233444455555554421  1


Q ss_pred             HhhccHHHHhccCCCcEEEEc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~  187 (333)
                      .+-+ +..++.||++..+|-+
T Consensus       259 ~~~~-~~~~~~lk~~Gt~V~v  278 (360)
T KOG0023|consen  259 EHAL-EPLLGLLKVNGTLVLV  278 (360)
T ss_pred             ccch-HHHHHHhhcCCEEEEE
Confidence            1111 3455566666555544

>PRK06223 malate dehydrogenase; Reviewed

Probab=97.07  E-value=0.0029  Score=60.48  Aligned_cols=111  Identities=18%  Similarity=0.226  Sum_probs=65.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------C--cc--c-cChhhhccCCCEEEEecC--
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------N--IA--S-LGLEDIWPLADYITVHTP--  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g--v~--~-~~l~ell~~aDvV~l~~P--  161 (333)
                      +||+|||.|.||..+|..+...|. +|+.||...........         +  ..  . .+. +.+++||+|++++.  
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~~p   81 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAGVP   81 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCCCC
Confidence            689999999999999999987665 99999986533222111         1  11  1 134 45799999999863  


Q ss_pred             Cch---------hhHhhccHHH---HhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE
Q psy6348         162 LIP---------QTKNLINAEV---LKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA  211 (333)
Q Consensus       162 ~t~---------~t~~li~~~~---~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa  211 (333)
                      ..+         .+..++ .+.   +....+++++|+.+-..-+....+.+.  +...++.|.+
T Consensus        82 ~~~~~~r~~~~~~n~~i~-~~i~~~i~~~~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~g  144 (307)
T PRK06223         82 RKPGMSRDDLLGINAKIM-KDVAEGIKKYAPDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMA  144 (307)
T ss_pred             CCcCCCHHHHHHHHHHHH-HHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeC
Confidence            211         111122 122   222336678888865444444444442  2234677764

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.06  E-value=0.011  Score=57.52  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=84.4

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~  116 (333)
                      +.+...+|+|+|.-+....++-  +++=++.+.++                  .|..+.|+||++||=+  ++..+++..
T Consensus       117 ~~a~~~~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~------------------~g~~l~gl~ia~vGD~~~~v~~Sl~~~  176 (334)
T PRK01713        117 ELAEYAGVPVFNGLTDEFHPTQ--MLADVLTMIEN------------------CDKPLSEISYVYIGDARNNMGNSLLLI  176 (334)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------cCCCcCCcEEEEECCCccCHHHHHHHH
Confidence            4456678999999665555543  23223333221                  1224789999999986  678888889


Q ss_pred             HhhCCCEEEEEcCCC---CHH-------HHHhcCcc--c-cChhhhccCCCEEEEec----CCch---hh------Hhhc
Q psy6348         117 MQAFGMKVIGFDPMV---SVE-------DAAKLNIA--S-LGLEDIWPLADYITVHT----PLIP---QT------KNLI  170 (333)
Q Consensus       117 l~~~G~~V~~~d~~~---~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~~----P~t~---~t------~~li  170 (333)
                      +..+|++|..+.|..   ..+       .+++.|..  . .++++.+++||+|..-+    ....   ..      .-.+
T Consensus       177 ~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v  256 (334)
T PRK01713        177 GAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQV  256 (334)
T ss_pred             HHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcC
Confidence            999999999988753   111       12334533  2 37999999999998732    1100   11      1125


Q ss_pred             cHHHHhcc-CCCcEEEEcc
Q psy6348         171 NAEVLKKC-KKGVRVVNVA  188 (333)
Q Consensus       171 ~~~~~~~m-k~gailIN~a  188 (333)
                      +++.++.. |+++++..|.
T Consensus       257 ~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        257 TPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             CHHHHhccCCCCCEEECCC
Confidence            67778875 7889998884

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=97.04  E-value=0.0029  Score=61.26  Aligned_cols=115  Identities=19%  Similarity=0.228  Sum_probs=70.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------C----ccc-cChhhhccCCCEEEEec
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------N----IAS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----v~~-~~l~ell~~aDvV~l~~  160 (333)
                      +..+||+|||.|.||..+|..+...|. +|+.+|.......++.+         +    +.. .+. +.+++||+|+++.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            455799999999999999999888785 89999987643221111         1    111 144 5679999999976


Q ss_pred             CC--c--------------hhhHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhhh--cCCceEEE
Q psy6348         161 PL--I--------------PQTKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSLK--CGHCGGAA  211 (333)
Q Consensus       161 P~--t--------------~~t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~--~g~i~gaa  211 (333)
                      -.  .              ..+..++.  -+.+....|.+++|+.+-..=+-...+.+...  ..++.|.+
T Consensus        83 g~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         83 GLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             CCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            21  1              11122221  11233345777999998544344445544432  34666666

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=97.03  E-value=0.015  Score=57.22  Aligned_cols=98  Identities=19%  Similarity=0.128  Sum_probs=64.4

Q ss_pred             CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCcc-ccCCCEEEEEecC--------hHHHHHH
Q psy6348          44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGT-ELYGKTLAVLGLG--------RIGREVA  114 (333)
Q Consensus        44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~-~l~gktvGIIGlG--------~IG~~vA  114 (333)
                      -.|+|+|.-+....++-  +++=++.+.++                 +.+. .+.|+||+|+|.|        ++.++++
T Consensus       134 s~vPVINa~~~~~HPtQ--aLaDl~Ti~e~-----------------~G~~~~l~g~kvai~~~~d~~~gr~~~v~~Sl~  194 (357)
T TIGR03316       134 QRPPLVNLQCDIDHPTQ--AMADIMTLQEK-----------------FGGIENLKGKKFAMTWAYSPSYGKPLSVPQGII  194 (357)
T ss_pred             CCCCEEECCCCCCCchH--HHHHHHHHHHH-----------------hCCccccCCCEEEEEeccccccCccchHHHHHH
Confidence            36999999765555543  33333333221                 1112 3789999999853        4557888


Q ss_pred             HHHhhCCCEEEEEcCCC---CHHH-------HHhcCcc--c-cChhhhccCCCEEEEec
Q psy6348         115 LRMQAFGMKVIGFDPMV---SVED-------AAKLNIA--S-LGLEDIWPLADYITVHT  160 (333)
Q Consensus       115 ~~l~~~G~~V~~~d~~~---~~~~-------a~~~gv~--~-~~l~ell~~aDvV~l~~  160 (333)
                      ..+..+|++|....|..   .++.       +++.|..  . .++++.++++|+|..-.
T Consensus       195 ~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~  253 (357)
T TIGR03316       195 GLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPKS  253 (357)
T ss_pred             HHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECC
Confidence            88999999999998763   2221       2344543  2 37999999999998863

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.03  E-value=0.0021  Score=63.71  Aligned_cols=90  Identities=17%  Similarity=0.137  Sum_probs=64.5

Q ss_pred             CCEEEEEecChHHHHHHHHHhh-CC--CEEEEEcCCCCH--HHHH----hc-C---cccc-ChhhhccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA-FG--MKVIGFDPMVSV--EDAA----KL-N---IASL-GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~-~G--~~V~~~d~~~~~--~~a~----~~-g---v~~~-~l~ell~~aDvV~l~~P~t  163 (333)
                      -++++|||.|..++..++.+.. +.  -+|.+|+|+...  +.++    .. +   +..+ +.++++++||+|+.+++.+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~  234 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE  234 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence            4799999999999999988766 42  389999998733  1111    11 2   3333 7999999999999999754


Q ss_pred             h---hhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         164 P---QTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       164 ~---~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      .   .+.-++..+.   +|+|+.++.++.-
T Consensus       235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~~  261 (379)
T PRK06199        235 TGDPSTYPYVKREW---VKPGAFLLMPAAC  261 (379)
T ss_pred             CCCCCcCcEecHHH---cCCCcEEecCCcc
Confidence            3   3446676554   6899988877653

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.01  E-value=0.0043  Score=63.16  Aligned_cols=101  Identities=23%  Similarity=0.260  Sum_probs=70.6

Q ss_pred             ccCCCEEEEEec----------ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHH-hc----------------------Cc
Q psy6348          95 ELYGKTLAVLGL----------GRIGREVALRMQAFGMKVIGFDPMVSVEDAA-KL----------------------NI  141 (333)
Q Consensus        95 ~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~----------------------gv  141 (333)
                      .+.|++|+|+|+          ..-...+++.|...|.+|.+|||....+... ..                      ++
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            588999999998          4467889999999999999999987543321 12                      12


Q ss_pred             ccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhH
Q psy6348         142 ASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL  198 (333)
Q Consensus       142 ~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL  198 (333)
                      +++ ++++.+++||+|+++++- ++.+.+--......|++..+++|. |+ +++.+.+
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~-~ef~~l~~~~~~~~m~~~~~viD~-rn-~l~~~~~  455 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEW-DEFKTLDYQKIYDNMQKPAFVFDG-RN-VLDHEKL  455 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCC-hHhcccCHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            333 557899999999999873 444444333445667766688885 43 4455554

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=97.01  E-value=0.0022  Score=57.91  Aligned_cols=91  Identities=21%  Similarity=0.277  Sum_probs=62.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH------------------H-----HHHhc--Ccc----
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV------------------E-----DAAKL--NIA----  142 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~------------------~-----~a~~~--gv~----  142 (333)
                      ..|.+++|.|||+|.+|+.+|+.|...|. ++..+|+.. +.                  .     ..++.  .++    
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~   96 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTAL   96 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46899999999999999999999999998 899998762 10                  0     11111  111    


Q ss_pred             --cc---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         143 --SL---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       143 --~~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                        ..   +++++++++|+|+.++. +.+++..+++...+.-+   -+|..+
T Consensus        97 ~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i---p~i~~~  143 (202)
T TIGR02356        97 KERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT---PLISAA  143 (202)
T ss_pred             hhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC---CEEEEE
Confidence              11   24567889999988874 56777777766554333   355543

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.99  E-value=0.0047  Score=60.94  Aligned_cols=108  Identities=13%  Similarity=0.116  Sum_probs=78.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC---------------------ccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN---------------------IAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g---------------------v~~-~~l~ell~~aDvV  156 (333)
                      ++|.|+|.|-+|...+..+..+|++|+++|-..+.-..-..|                     ... .+.++.++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            479999999999999999999999999998644221111111                     122 2677889999999


Q ss_pred             EEecCCchhhHhhcc--------HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         157 TVHTPLIPQTKNLIN--------AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       157 ~l~~P~t~~t~~li~--------~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                      ++++|..+.-.|-++        ++..+.++..+++|+-|+-.+=..+.+.+.+.+..
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~  138 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREEN  138 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhc
Confidence            999995443333332        45567787779999999987777777777665554

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.96  E-value=0.009  Score=51.91  Aligned_cols=92  Identities=20%  Similarity=0.198  Sum_probs=66.1

Q ss_pred             CCCEEEEEe--cChHHHHHHHHHhhCCCEEEEEcCCC---CH--HH-------HHhcCc--cc-cChhhhccCCCEEEEe
Q psy6348          97 YGKTLAVLG--LGRIGREVALRMQAFGMKVIGFDPMV---SV--ED-------AAKLNI--AS-LGLEDIWPLADYITVH  159 (333)
Q Consensus        97 ~gktvGIIG--lG~IG~~vA~~l~~~G~~V~~~d~~~---~~--~~-------a~~~gv--~~-~~l~ell~~aDvV~l~  159 (333)
                      .|+||++||  .+++..+++..+..||+++....|..   ..  +.       +.+.|.  .. .++++.++++|+|..-
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  38999999999999999999998865   12  11       122243  33 3799999999999887


Q ss_pred             cCC----chh------hH-hhccHHHHhccCCCcEEEEcc
Q psy6348         160 TPL----IPQ------TK-NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       160 ~P~----t~~------t~-~li~~~~~~~mk~gailIN~a  188 (333)
                      .--    .+.      .. -.++++.++.+|++++|..+.
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L  120 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL  120 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence            653    110      11 345788889899999999984

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=96.96  E-value=0.0048  Score=59.14  Aligned_cols=90  Identities=13%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHHHHhcC---------c--cc-cChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVEDAAKLN---------I--AS-LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g---------v--~~-~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ++|+|||.|.+|+.+|..|...|  .+|..+|+...........         .  .. ..-.+.+++||+|+++.....
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~~   80 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAPQ   80 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCCC
Confidence            48999999999999999999888  4899999876432222211         1  11 122345789999999987421


Q ss_pred             ---hhH--------hhcc--HHHHhccCCCcEEEEcc
Q psy6348         165 ---QTK--------NLIN--AEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       165 ---~t~--------~li~--~~~~~~mk~gailIN~a  188 (333)
                         .++        .++.  .+.+....+.+++|+++
T Consensus        81 ~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs  117 (306)
T cd05291          81 KPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS  117 (306)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec
Confidence               111        1111  12334456788999997

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.95  E-value=0.0089  Score=49.24  Aligned_cols=99  Identities=20%  Similarity=0.272  Sum_probs=65.4

Q ss_pred             CEEEEEe----cChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLG----LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIG----lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      |+++|||    -+..|..+.+.|++.|++|+..+|....    -.|... .+++|.-...|++++++|. +.+..++ ++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v-~~   74 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIV-DE   74 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHH-HH
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHH-HH
Confidence            6899999    6899999999999999999999986522    135443 4788855889999999993 3444444 22


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      . ..+..+.+++..+    ..++++.+.+++..+.
T Consensus        75 ~-~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~  104 (116)
T PF13380_consen   75 A-AALGVKAVWLQPG----AESEELIEAAREAGIR  104 (116)
T ss_dssp             H-HHHT-SEEEE-TT----S--HHHHHHHHHTT-E
T ss_pred             H-HHcCCCEEEEEcc----hHHHHHHHHHHHcCCE
Confidence            2 3345677888877    6677788888887765

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=96.94  E-value=0.0073  Score=57.85  Aligned_cols=111  Identities=14%  Similarity=0.151  Sum_probs=74.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHh-cCccc------------cChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAK-LNIAS------------LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~-~gv~~------------~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ++|+|+|.|.||+-+|-+|...|.+|..++|.. ..+...+ .|+..            ....+.....|+|++++-.. 
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence            479999999999999999999999999999864 2232222 23321            01122345789999998532 


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL  212 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal  212 (333)
                      ++...+ +.....+.+++.+|-+ --++-.++.+.+.+...++.++..
T Consensus        82 ~~~~al-~~l~~~l~~~t~vv~l-QNGv~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         82 DAEPAV-ASLAHRLAPGAELLLL-QNGLGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             hHHHHH-HHHHhhCCCCCEEEEE-eCCCCCHHHHHHhCCCCcEEEEEe
Confidence            344433 4455667788877766 455566777888887666665443

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.94  E-value=0.004  Score=60.52  Aligned_cols=86  Identities=21%  Similarity=0.230  Sum_probs=64.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH-H-HH----HhcCc--ccc-ChhhhccCCCEEEEecCCchhh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV-E-DA----AKLNI--ASL-GLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~-~-~a----~~~gv--~~~-~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      -++++|||.|..+..-++.++. ++. +|.+|+|.... + .+    ++.+.  ..+ +.+++++.||+|+.++|.++  
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~--  207 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE--  207 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence            4589999999999999988875 444 79999997732 2 22    12232  233 78999999999999998554  


Q ss_pred             HhhccHHHHhccCCCcEEEEccC
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aR  189 (333)
                       -++..+.   +|||+.+..++.
T Consensus       208 -Pil~~~~---l~~G~hI~aiGa  226 (330)
T COG2423         208 -PVLKAEW---LKPGTHINAIGA  226 (330)
T ss_pred             -CeecHhh---cCCCcEEEecCC
Confidence             6676665   579999999875

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.92  E-value=0.0045  Score=57.98  Aligned_cols=63  Identities=29%  Similarity=0.325  Sum_probs=45.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHhh-CCCEEEE-EcCCCCHH-HHHhcCccc-cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQA-FGMKVIG-FDPMVSVE-DAAKLNIAS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~-~a~~~gv~~-~~l~ell~~aDvV~l~~P  161 (333)
                      .+|+|+|+ |+||+.+++.+.. -++++.+ +|+..... .....++.. .+++++++++|+|+.++|
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence            48999998 9999999998875 4788766 67654221 112334433 478898989999998876

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.91  E-value=0.015  Score=55.93  Aligned_cols=128  Identities=15%  Similarity=0.100  Sum_probs=84.0

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM  117 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l  117 (333)
                      +.+..-+++|+|+-+....++-  +++=++.+.++                  .| .+.|++|++||= +++.++++..+
T Consensus       114 ~~a~~~~vPVINag~~~~HPtQ--aL~Dl~Ti~e~------------------~g-~l~gl~i~~vGd~~~v~~Sl~~~l  172 (304)
T PRK00779        114 ELAEYSTVPVINGLTDLSHPCQ--ILADLLTIYEH------------------RG-SLKGLKVAWVGDGNNVANSLLLAA  172 (304)
T ss_pred             HHHHhCCCCEEeCCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCcEEEEEeCCCccHHHHHHHH
Confidence            3456678999999765555543  33333333221                  12 278899999998 78999999999


Q ss_pred             hhCCCEEEEEcCCC--C-HHH----HHhcCcc--c-cChhhhccCCCEEEEec----CCch---h-----hHhhccHHHH
Q psy6348         118 QAFGMKVIGFDPMV--S-VED----AAKLNIA--S-LGLEDIWPLADYITVHT----PLIP---Q-----TKNLINAEVL  175 (333)
Q Consensus       118 ~~~G~~V~~~d~~~--~-~~~----a~~~gv~--~-~~l~ell~~aDvV~l~~----P~t~---~-----t~~li~~~~~  175 (333)
                      ..+|++|....|..  . .+.    +++.|..  . .++++.++++|+|..-.    ....   +     -.--++++.+
T Consensus       173 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l  252 (304)
T PRK00779        173 ALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELM  252 (304)
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHH
Confidence            99999999988754  1 122    3445643  2 37999999999998742    1100   1     1122456667


Q ss_pred             hccCCCcEEEEc
Q psy6348         176 KKCKKGVRVVNV  187 (333)
Q Consensus       176 ~~mk~gailIN~  187 (333)
                      +.+|+++++..+
T Consensus       253 ~~~~~~~ivmHp  264 (304)
T PRK00779        253 ALAKPDAIFMHC  264 (304)
T ss_pred             HhcCCCeEEecC
Confidence            777777777776

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.91  E-value=0.014  Score=56.08  Aligned_cols=128  Identities=25%  Similarity=0.219  Sum_probs=82.9

Q ss_pred             hhHhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC---hHHHHHH
Q psy6348          39 TAATRKGVLVLNAPG-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG---RIGREVA  114 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG---~IG~~vA  114 (333)
                      +.+..-+|+|+|.-. ....++--  ++=++.+.++                  .| .+.|+||++||-|   ++..+++
T Consensus       111 ~~a~~s~vPVINa~~g~~~HPtQ~--LaDl~Ti~e~------------------~g-~l~g~~va~vGD~~~~~v~~Sl~  169 (301)
T TIGR00670       111 LAAEVSEVPVINAGDGSNQHPTQT--LLDLYTIYEE------------------FG-RLDGLKIALVGDLKYGRTVHSLA  169 (301)
T ss_pred             HHHhhCCCCEEeCCCCCCCCcHHH--HHHHHHHHHH------------------hC-CCCCCEEEEEccCCCCcHHHHHH
Confidence            335557899999964 33455432  2223322221                  12 3789999999995   9999999


Q ss_pred             HHHhhCCCEEEEEcCCC---CH---HHHHhcCccc---cChhhhccCCCEEEEecCC------chhh-----HhhccHHH
Q psy6348         115 LRMQAFGMKVIGFDPMV---SV---EDAAKLNIAS---LGLEDIWPLADYITVHTPL------IPQT-----KNLINAEV  174 (333)
Q Consensus       115 ~~l~~~G~~V~~~d~~~---~~---~~a~~~gv~~---~~l~ell~~aDvV~l~~P~------t~~t-----~~li~~~~  174 (333)
                      ..+..+|++|....|..   +.   +.+++.|...   .++++.+++||+|..-.-.      .++.     .--++++.
T Consensus       170 ~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~el  249 (301)
T TIGR00670       170 EALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLER  249 (301)
T ss_pred             HHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHH
Confidence            99999999999988754   21   2233446433   3789999999999874210      0010     11235667


Q ss_pred             HhccCCCcEEEEc
Q psy6348         175 LKKCKKGVRVVNV  187 (333)
Q Consensus       175 ~~~mk~gailIN~  187 (333)
                      ++.+++++++..|
T Consensus       250 l~~a~~~ai~mHc  262 (301)
T TIGR00670       250 LEAAKKGVIIMHP  262 (301)
T ss_pred             HhhcCCCCEEECC
Confidence            7777888888777

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.89  E-value=0.014  Score=56.13  Aligned_cols=128  Identities=17%  Similarity=0.140  Sum_probs=84.2

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM  117 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l  117 (333)
                      +.+..-+|+|+|+-+....++-  +++=++.+.++                  .| .+.|.||+++|= +++-++++..+
T Consensus       110 ~~a~~~~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~------------------~g-~l~g~~v~~vGd~~~v~~Sl~~~l  168 (304)
T TIGR00658       110 ELAKYASVPVINGLTDLFHPCQ--ALADLLTIIEH------------------FG-KLKGVKVVYVGDGNNVCNSLMLAG  168 (304)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------hC-CCCCcEEEEEeCCCchHHHHHHHH
Confidence            4456678999999665555554  23323333221                  12 278999999997 78889999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH-------HHhcCcc--c-cChhhhccCCCEEEEec--CCc-----hh-----hHhhccH
Q psy6348         118 QAFGMKVIGFDPMV---SVED-------AAKLNIA--S-LGLEDIWPLADYITVHT--PLI-----PQ-----TKNLINA  172 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~-------a~~~gv~--~-~~l~ell~~aDvV~l~~--P~t-----~~-----t~~li~~  172 (333)
                      ..+|++|....|..   +...       +.+.|..  . .++++.+++||+|..-.  ...     ++     ..-.+++
T Consensus       169 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~  248 (304)
T TIGR00658       169 AKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNE  248 (304)
T ss_pred             HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCH
Confidence            99999999988754   1111       2334532  2 37999999999999843  100     01     1124577


Q ss_pred             HHHhccCCCcEEEEc
Q psy6348         173 EVLKKCKKGVRVVNV  187 (333)
Q Consensus       173 ~~~~~mk~gailIN~  187 (333)
                      +.++.+|+++++..+
T Consensus       249 ~~l~~~~~~~ivmHp  263 (304)
T TIGR00658       249 ELMELAKPEVIFMHC  263 (304)
T ss_pred             HHHhhcCCCCEEECC
Confidence            777778888888777

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.89  E-value=0.0041  Score=59.67  Aligned_cols=87  Identities=14%  Similarity=0.120  Sum_probs=62.5

Q ss_pred             CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH--HHHHh----cCcc--cc-ChhhhccCCCEEEEecCCchhh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV--EDAAK----LNIA--SL-GLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~----~gv~--~~-~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      -+++||||.|..|...++.+.. +.. +|.+|+|+...  +.+++    .|+.  .+ +.++++.+||+|+.++|.   +
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s---~  193 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNS---D  193 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCC---C
Confidence            4799999999999988877764 343 79999998733  11222    2432  23 799999999999999873   4


Q ss_pred             HhhccHHHHhccCCCcEEEEccCC
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      ..++..+.   +|||+.+.-++..
T Consensus       194 ~P~~~~~~---l~pg~hV~aiGs~  214 (301)
T PRK06407        194 TPIFNRKY---LGDEYHVNLAGSN  214 (301)
T ss_pred             CcEecHHH---cCCCceEEecCCC
Confidence            56776654   5898777766543

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.89  E-value=0.0019  Score=63.12  Aligned_cols=61  Identities=38%  Similarity=0.474  Sum_probs=46.9

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcCc--cc---cChhhhccCCCEEEE
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLNI--AS---LGLEDIWPLADYITV  158 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~gv--~~---~~l~ell~~aDvV~l  158 (333)
                      ++||||||-|..|+.++...+.+|++|++.||......+  ...-+  .+   ..+.++.++||+|+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence            479999999999999999999999999999987733211  11111  11   147889999999986

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.89  E-value=0.0042  Score=57.07  Aligned_cols=65  Identities=28%  Similarity=0.323  Sum_probs=48.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-HH-hcCcccc--------Chhhh-ccCCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-AA-KLNIASL--------GLEDI-WPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~-~~gv~~~--------~l~el-l~~aDvV~l~~P~t  163 (333)
                      +++.|+|+|++|..+|+.|...|++|+..|..... +. .. +.+...+        .|.++ +.++|+++.++...
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence            58999999999999999999999999999986633 22 11 2333221        35555 78899999998743

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.88  E-value=0.019  Score=56.13  Aligned_cols=130  Identities=14%  Similarity=0.154  Sum_probs=80.2

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHHh
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRMQ  118 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~  118 (333)
                      .+...+|+|+|.-+....++-  +++=++.+.+++         |       .|..+.|++|++||= .++..+++..+.
T Consensus       114 ~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------g-------~g~~l~glkv~~vGD~~~v~~Sl~~~~~  175 (338)
T PRK02255        114 LAKYATVPVINGMSDYNHPTQ--ELGDLFTMIEHL---------P-------EGKKLEDCKVVFVGDATQVCVSLMFIAT  175 (338)
T ss_pred             HHHhCCCCEEECCCCCCChHH--HHHHHHHHHHHh---------C-------CCCCCCCCEEEEECCCchHHHHHHHHHH
Confidence            455678999998665544543  222233332221         0       023588999999997 688888889999


Q ss_pred             hCCCEEEEEcCCC---CHHH---H----HhcC--ccc-cChhhhccCCCEEEEec-----CCch--hh-------Hhhcc
Q psy6348         119 AFGMKVIGFDPMV---SVED---A----AKLN--IAS-LGLEDIWPLADYITVHT-----PLIP--QT-------KNLIN  171 (333)
Q Consensus       119 ~~G~~V~~~d~~~---~~~~---a----~~~g--v~~-~~l~ell~~aDvV~l~~-----P~t~--~t-------~~li~  171 (333)
                      .+|++|..+.|..   ..+.   +    +..|  +.. .++++.++++|+|..-+     ....  ..       .-.++
T Consensus       176 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~  255 (338)
T PRK02255        176 KMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVT  255 (338)
T ss_pred             hCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceEC
Confidence            9999999998753   2111   1    1235  332 37999999999999833     1100  00       12345


Q ss_pred             HHHHhccCCCcEEEEc
Q psy6348         172 AEVLKKCKKGVRVVNV  187 (333)
Q Consensus       172 ~~~~~~mk~gailIN~  187 (333)
                      ++.++.+|+++++..|
T Consensus       256 ~ell~~a~~~~ivmHp  271 (338)
T PRK02255        256 PELMAKAGPHAKFMHC  271 (338)
T ss_pred             HHHHhccCCCCEEeCC
Confidence            5566666666666665

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.87  E-value=0.0026  Score=64.96  Aligned_cols=109  Identities=18%  Similarity=0.177  Sum_probs=68.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc---ChhhhccCCCEEEEecCCchhhH----
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTK----  167 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~----  167 (333)
                      +.|+++.|+|+|..|.+.++.|+..|++|+++|.... .+.+++.|+...   ...+.++++|+|+..-.-.+...    
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi~~~~p~~~~   89 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGFRPTAPVLAA   89 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCCCCCCHHHHH
Confidence            4689999999999999999999999999999996542 223455576543   23455678998887642222111    


Q ss_pred             ------hhccHHHHh-cc-C------C-CcEEEEccCCcccchHhHHhhhhc
Q psy6348         168 ------NLINAEVLK-KC-K------K-GVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       168 ------~li~~~~~~-~m-k------~-gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                            .++++-++. .+ +      + ..+-|--+-|+--...-+...|+.
T Consensus        90 a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         90 AAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             HHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence                  122222221 11 1      2 234444456777777767777765

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=96.87  E-value=0.0044  Score=62.02  Aligned_cols=66  Identities=17%  Similarity=0.176  Sum_probs=49.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-cCcccc--------Chhhh-ccCCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-LNIASL--------GLEDI-WPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~gv~~~--------~l~el-l~~aDvV~l~~P~t~  164 (333)
                      +++.|+|+|.+|+.+|+.|...|++|+++|+.... +..++ .++...        .++++ +.++|.|+++++...
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~   77 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE   77 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence            47999999999999999999999999999986532 23333 444321        34555 789999999998543

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=96.86  E-value=0.0054  Score=57.26  Aligned_cols=89  Identities=18%  Similarity=0.222  Sum_probs=71.9

Q ss_pred             HHHHHHHHhhCCCEEEEEcCCCC---H---HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCc
Q psy6348         110 GREVALRMQAFGMKVIGFDPMVS---V---EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGV  182 (333)
Q Consensus       110 G~~vA~~l~~~G~~V~~~d~~~~---~---~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ga  182 (333)
                      |..+|-.+...|+.|+..||+.+   .   +..++.|++.+ +-.+..+.+.+.++.+|.-..|-++. ++.+.+++.|+
T Consensus        33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA  111 (340)
T COG4007          33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA  111 (340)
T ss_pred             chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence            67899999999999999999763   2   34466788877 45678899999999999988888876 78899999999


Q ss_pred             EEEEccCCcccchHhHHhhh
Q psy6348         183 RVVNVARGGIVDENALLDSL  202 (333)
Q Consensus       183 ilIN~aRg~~vd~~aL~~aL  202 (333)
                      ++.|+..-+.+   .|+..|
T Consensus       112 VicnTCT~sp~---vLy~~L  128 (340)
T COG4007         112 VICNTCTVSPV---VLYYSL  128 (340)
T ss_pred             EecccccCchh---HHHHHh
Confidence            99999886554   345555

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=96.85  E-value=0.042  Score=54.69  Aligned_cols=204  Identities=16%  Similarity=0.117  Sum_probs=129.1

Q ss_pred             cceEEEcccCcC--ccChhhH--------hhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCC
Q psy6348          23 LQVVGRAGTGVD--NIDLTAA--------TRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT   92 (333)
Q Consensus        23 Lk~I~~~g~G~d--~iD~~aa--------~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~   92 (333)
                      .|.+.....|++  .||-..|        .+..|+|+|+.-   ..+|=.+++-+++.+|                  ..
T Consensus       135 Vkal~p~FgginLedi~ap~cf~ie~~lr~~~~IPvFhDDq---qGTaiv~lA~llnalk------------------~~  193 (432)
T COG0281         135 VKALEPTFGGINLEDIDAPRCFAIEERLRYRMNIPVFHDDQ---QGTAIVTLAALLNALK------------------LT  193 (432)
T ss_pred             HHHhhhcCCCcceeecccchhhHHHHHHhhcCCCCcccccc---cHHHHHHHHHHHHHHH------------------Hh
Confidence            455555555554  3333333        346799999853   4566668888888776                  35


Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC---EEEEEcCCC--C--HHH----------HHhcCccccChhhhccCCCE
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM---KVIGFDPMV--S--VED----------AAKLNIASLGLEDIWPLADY  155 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~--~--~~~----------a~~~gv~~~~l~ell~~aDv  155 (333)
                      |..|...+|.+.|.|.-|-.+++.+++.|+   +|+.+|+.-  .  .+.          +.+..-.+.. ++.+..+|+
T Consensus       194 gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv  272 (432)
T COG0281         194 GKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADV  272 (432)
T ss_pred             CCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCE
Confidence            788999999999999999999999999998   589888652  1  110          0000001111 568889998


Q ss_pred             EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC-CceEEEeccCCCCCCCCccchhhcCCCcE
Q psy6348         156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG-HCGGAALDVFCEEPPKSEQTFELIKHPKV  234 (333)
Q Consensus       156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g-~i~gaalDV~~~EP~~~~~~~~L~~~pnv  234 (333)
                      ++=+-     ..|.+.++.++.|.+.+++.=+|-...--..+.+.+-..| .|.+      ..-|..     |- +.-|+
T Consensus       273 ~iG~S-----~~G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~~~~~aaiva------TGrsd~-----Pn-QvNNv  335 (432)
T COG0281         273 LIGVS-----GVGAFTEEMVKEMAKHPIIFALANPTPEITPEDAKEWGDGAAIVA------TGRSDY-----PN-QVNNV  335 (432)
T ss_pred             EEEcC-----CCCCcCHHHHHHhccCCEEeecCCCCccCCHHHHhhcCCCCEEEE------eCCCCC-----cc-cccce
Confidence            87652     2399999999999999999988876632222222222222 3322      112211     11 56799


Q ss_pred             EEccCCCCCc-----HHHHHHHHHHHHHHHHHhHcC
Q psy6348         235 IVTPHLGAST-----KEAQIRVAVEIAEQFIALANT  265 (333)
Q Consensus       235 i~TPHi~~~t-----~ea~~~~~~~~~~~i~~~~~~  265 (333)
                      ++-|.|+--.     ..--+.|-..+++.|.++...
T Consensus       336 L~FPgIfrGaLd~rA~~ItdeM~~AAa~AiA~~~~~  371 (432)
T COG0281         336 LIFPGIFRGALDVRAKTITDEMKIAAAEAIADLARE  371 (432)
T ss_pred             eEcchhhhhhHhhccccCCHHHHHHHHHHHHhhccc
Confidence            9999985211     112234666677777776554

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.85  E-value=0.01  Score=57.91  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=82.0

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~  116 (333)
                      +.+...+|+|+|.-+....++-  +++=++.+.++                 +.+..+.|++|++||-+  ++..+++..
T Consensus       116 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~-----------------~g~~~l~g~~ia~vGD~~~~v~~Sl~~~  176 (336)
T PRK03515        116 TLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEH-----------------LPGKAFNEMTLAYAGDARNNMGNSLLEA  176 (336)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH-----------------hCCCCcCCCEEEEeCCCcCcHHHHHHHH
Confidence            4456678999998665555544  33333333221                 11124789999999976  689999999


Q ss_pred             HhhCCCEEEEEcCCC---CH-------HHHHhcCc--cc-cChhhhccCCCEEEEecCCch-------h------hHhhc
Q psy6348         117 MQAFGMKVIGFDPMV---SV-------EDAAKLNI--AS-LGLEDIWPLADYITVHTPLIP-------Q------TKNLI  170 (333)
Q Consensus       117 l~~~G~~V~~~d~~~---~~-------~~a~~~gv--~~-~~l~ell~~aDvV~l~~P~t~-------~------t~~li  170 (333)
                      +..+|+++....|..   ..       +.+++.|.  .. .++++.++++|+|..-+=...       .      ..-.+
T Consensus       177 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v  256 (336)
T PRK03515        177 AALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQV  256 (336)
T ss_pred             HHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCcc
Confidence            999999999988754   11       11233453  33 379999999999987421000       0      01123


Q ss_pred             cHHHHhcc-CCCcEEEEc
Q psy6348         171 NAEVLKKC-KKGVRVVNV  187 (333)
Q Consensus       171 ~~~~~~~m-k~gailIN~  187 (333)
                      +++.++.. |+++++..|
T Consensus       257 ~~~lm~~a~k~~~ivmHc  274 (336)
T PRK03515        257 NSKMMQLTGNPQVKFLHC  274 (336)
T ss_pred             CHHHHhcccCCCCEEECC
Confidence            55666663 677777776

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.84  E-value=0.0035  Score=57.17  Aligned_cols=89  Identities=24%  Similarity=0.179  Sum_probs=65.3

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH---HhcCccc----cChhhhccCCCEEEEecCCchh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA---AKLNIAS----LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a---~~~gv~~----~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ..++.||++.|||-|.+|..=++.+...|.+|+++.+...++..   ...++..    ...++ +..+++|+.+++..+ 
T Consensus         7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~~-   84 (210)
T COG1648           7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDEE-   84 (210)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCHH-
Confidence            46799999999999999999999999999999999998744322   2222222    23333 344999999987543 


Q ss_pred             hHhhccHHHHhccCCCcEEEEc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~  187 (333)
                          +++..+..+++-.++||+
T Consensus        85 ----ln~~i~~~a~~~~i~vNv  102 (210)
T COG1648          85 ----LNERIAKAARERRILVNV  102 (210)
T ss_pred             ----HHHHHHHHHHHhCCceec
Confidence                556666666676788887

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.84  E-value=0.0061  Score=49.23  Aligned_cols=84  Identities=26%  Similarity=0.394  Sum_probs=56.6

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-----C---hhh-hccCCCEEEEecCCchhhHhhc
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-----G---LED-IWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-----~---l~e-ll~~aDvV~l~~P~t~~t~~li  170 (333)
                      +-|+|+|++|+.+++.|++.+.+|++.|... ..+.+.+.|+...     +   +++ -+.++|.++++++...  .++.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~--~n~~   78 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE--ENLL   78 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH--HHHH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH--HHHH
Confidence            4699999999999999999777999999876 3345556665432     2   222 2678999999998543  3333


Q ss_pred             cHHHHhccCCCcEEEE
Q psy6348         171 NAEVLKKCKKGVRVVN  186 (333)
Q Consensus       171 ~~~~~~~mk~gailIN  186 (333)
                      -...++.+-+...++-
T Consensus        79 ~~~~~r~~~~~~~ii~   94 (116)
T PF02254_consen   79 IALLARELNPDIRIIA   94 (116)
T ss_dssp             HHHHHHHHTTTSEEEE
T ss_pred             HHHHHHHHCCCCeEEE
Confidence            3444455555555553

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.83  E-value=0.0045  Score=51.49  Aligned_cols=97  Identities=25%  Similarity=0.341  Sum_probs=57.3

Q ss_pred             EEEEEec-ChHHHHHHHHHhh-CCCEEEE-EcCCCCHHH----HH-----hcCccc-cChhhhccCCCEEEEecCCchh-
Q psy6348         100 TLAVLGL-GRIGREVALRMQA-FGMKVIG-FDPMVSVED----AA-----KLNIAS-LGLEDIWPLADYITVHTPLIPQ-  165 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~----a~-----~~gv~~-~~l~ell~~aDvV~l~~P~t~~-  165 (333)
                      +|+|+|+ |+||+.+++.+.. -|+++.+ +|+..+...    ..     ..|+.. .++++++.++|+++-..  +++ 
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT--~p~~   79 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT--NPDA   79 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES---HHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC--ChHH
Confidence            7999999 9999999999987 7888655 566542111    11     223333 37999999999998876  232 


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhh
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSL  202 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL  202 (333)
                      +...+ +..   ++.|.-+|-...|---.+.+.++.+
T Consensus        80 ~~~~~-~~~---~~~g~~~ViGTTG~~~~~~~~l~~~  112 (124)
T PF01113_consen   80 VYDNL-EYA---LKHGVPLVIGTTGFSDEQIDELEEL  112 (124)
T ss_dssp             HHHHH-HHH---HHHT-EEEEE-SSSHHHHHHHHHHH
T ss_pred             hHHHH-HHH---HhCCCCEEEECCCCCHHHHHHHHHH
Confidence            22222 222   3447777776677643443444443

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>KOG2653|consensus

Probab=96.82  E-value=0.0065  Score=59.07  Aligned_cols=154  Identities=17%  Similarity=0.194  Sum_probs=110.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHH--HhcCcc---ccChhhh---ccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDA--AKLNIA---SLGLEDI---WPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a--~~~gv~---~~~l~el---l~~aDvV~l~~P~t~~t~~  168 (333)
                      ..+|+||++.||+.++......|+.|.+|+|..+.  +..  +..|..   ..|++++   +++--+|++.+-.-.-...
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~   86 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ   86 (487)
T ss_pred             cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence            46899999999999999999999999999998754  111  122332   2377776   4667788888765444455


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHHH
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ  248 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~  248 (333)
                      +| +++..+|.+|-++|+-+....-|...=.+.|....|-..+.-|...|--..       .-|.+     +-|-+.+++
T Consensus        87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR-------~GPSl-----MpGg~~~Aw  153 (487)
T KOG2653|consen   87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGAR-------YGPSL-----MPGGSKEAW  153 (487)
T ss_pred             HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccc-------cCCcc-----CCCCChHHH
Confidence            55 677789999999999999999999999999988888889999988775221       11221     224466777


Q ss_pred             HHHHHHHHHHHHH-hHcCC
Q psy6348         249 IRVAVEIAEQFIA-LANTN  266 (333)
Q Consensus       249 ~~~~~~~~~~i~~-~~~~~  266 (333)
                      .++- .+.+.|.. ..+++
T Consensus       154 p~ik-~ifq~iaakv~~~e  171 (487)
T KOG2653|consen  154 PHIK-DIFQKIAAKVSDGE  171 (487)
T ss_pred             HHHH-HHHHHHHHHhcCCC
Confidence            7663 34455544 33444

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=96.80  E-value=0.0044  Score=59.18  Aligned_cols=110  Identities=16%  Similarity=0.220  Sum_probs=63.6

Q ss_pred             EEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------C----ccc-cChhhhccCCCEEEEecCC--c
Q psy6348         101 LAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------N----IAS-LGLEDIWPLADYITVHTPL--I  163 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------g----v~~-~~l~ell~~aDvV~l~~P~--t  163 (333)
                      |+|||.|.||..+|..+...|. +|+.+|.......+...         +    +.. .+. +.+++||+|+++...  .
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~p~~   79 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGIPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCCCCC
Confidence            6899999999999998886665 99999987643221111         1    111 133 458999999998731  1


Q ss_pred             h---------hhHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhh--hcCCceEEE
Q psy6348         164 P---------QTKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSL--KCGHCGGAA  211 (333)
Q Consensus       164 ~---------~t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL--~~g~i~gaa  211 (333)
                      +         ++..++.  -+.+....+++++|+.+-..-+-...+.+..  ...++.|.+
T Consensus        80 ~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          80 PGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence            1         1111111  1122334467788888744333333444432  223566666

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.79  E-value=0.0041  Score=62.05  Aligned_cols=107  Identities=18%  Similarity=0.157  Sum_probs=63.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH-HhcCccc-cChhhhccCCCEEEEecCCchhhHh-------
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA-AKLNIAS-LGLEDIWPLADYITVHTPLIPQTKN-------  168 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~-------  168 (333)
                      .++|.|||+|.+|.++|+.|+..|++|.++|+....... ...+-.. ...+.+..++|+++.+.+..+...-       
T Consensus         3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~~~~~l~~A~~~   82 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKKEHPWVQAAIAS   82 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCCCcHHHHHHHHC
Confidence            478999999999999999999999999999986532111 0000011 1233445779988888754432111       


Q ss_pred             ---hccHHHHh--c--cCC-CcEEEEccCCcccchHhHHhhhhc
Q psy6348         169 ---LINAEVLK--K--CKK-GVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       169 ---li~~~~~~--~--mk~-gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                         ++.+..+.  .  +.+ ..+=|--+-|+--...=|...|+.
T Consensus        83 g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         83 HIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence               22332221  1  112 234444456776666667777764

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=96.79  E-value=0.0041  Score=51.30  Aligned_cols=85  Identities=18%  Similarity=0.300  Sum_probs=50.7

Q ss_pred             EEEEEe-cChHHHHHHHHHhh-CCCEEEE-EcCCCCH--HHHHhc----Ccccc---C-hhhhccCCCEEEEecCCchhh
Q psy6348         100 TLAVLG-LGRIGREVALRMQA-FGMKVIG-FDPMVSV--EDAAKL----NIASL---G-LEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus       100 tvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~~--~~a~~~----gv~~~---~-l~ell~~aDvV~l~~P~t~~t  166 (333)
                      ||+||| .|.+|+.+.++|.. ..+++.. +++..+.  ......    +....   + ..+.+.++|+|++|+|.. .+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~   79 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-AS   79 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HH
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HH
Confidence            699999 99999999999875 4556544 4443311  111111    11111   1 223459999999999832 22


Q ss_pred             HhhccHHHHhccCCCcEEEEccC
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aR  189 (333)
                      ..+. ...   +++|..+|+.+.
T Consensus        80 ~~~~-~~~---~~~g~~ViD~s~   98 (121)
T PF01118_consen   80 KELA-PKL---LKAGIKVIDLSG   98 (121)
T ss_dssp             HHHH-HHH---HHTTSEEEESSS
T ss_pred             HHHH-HHH---hhCCcEEEeCCH
Confidence            2221 222   578999999864

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.76  E-value=0.048  Score=58.43  Aligned_cols=160  Identities=11%  Similarity=0.088  Sum_probs=110.3

Q ss_pred             CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-
Q psy6348          44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM-  122 (333)
Q Consensus        44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-  122 (333)
                      ..|+|+|+.   -..+|=-+++-+++..|-                  .|..+...++.|.|.|.-|-.+|+.+...|. 
T Consensus       152 ~~ip~f~DD---~~GTa~v~lA~l~na~~~------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  210 (752)
T PRK07232        152 MDIPVFHDD---QHGTAIISAAALLNALEL------------------VGKKIEDVKIVVSGAGAAAIACLNLLVALGAK  210 (752)
T ss_pred             cCCCeeccc---cchHHHHHHHHHHHHHHH------------------hCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence            479999984   345666688888887772                  3567888899999999999999999999998 


Q ss_pred             --EEEEEcCCC--C------HHHHHh-c--CccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         123 --KVIGFDPMV--S------VEDAAK-L--NIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       123 --~V~~~d~~~--~------~~~a~~-~--gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                        +++.+|+.-  .      ....+. +  .-...+|.|+++.+|+++=. .    +.+.+.++.++.|.+.+++.=.|.
T Consensus       211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN  285 (752)
T PRK07232        211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALAN  285 (752)
T ss_pred             cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecCC
Confidence              788888542  0      011111 1  11224899999999987754 2    258999999999999999999998


Q ss_pred             CcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348         190 GGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       190 g~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~  241 (333)
                      ...--..+.+.....|.|.+-+   -...|  .       +.-|+++-|-++
T Consensus       286 P~~E~~p~~a~~~~~~~i~atG---rs~~p--n-------Q~NN~~~FPgi~  325 (752)
T PRK07232        286 PDPEITPEEAKAVRPDAIIATG---RSDYP--N-------QVNNVLCFPYIF  325 (752)
T ss_pred             CCccCCHHHHHHhcCCEEEEEC---CcCCC--C-------cccceeecchhh
Confidence            7753222222222224454333   11112  1       466899999875

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=96.75  E-value=0.036  Score=51.88  Aligned_cols=159  Identities=11%  Similarity=0.090  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-----------EEEEE
Q psy6348          59 ACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM-----------KVIGF  127 (333)
Q Consensus        59 vAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-----------~V~~~  127 (333)
                      +|--+++-+++.+|                  ..|..|...++.|+|.|..|-.+|+.+...+.           +++.+
T Consensus         4 TaaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~v   65 (254)
T cd00762           4 TASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXV   65 (254)
T ss_pred             hHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEE
Confidence            45557777887776                  23567888999999999999999999987766           58888


Q ss_pred             cCCC---------CHHHHH-----hcCccccChhhhcc--CCCEEEEecCCchhhHhhccHHHHhccC---CCcEEEEcc
Q psy6348         128 DPMV---------SVEDAA-----KLNIASLGLEDIWP--LADYITVHTPLIPQTKNLINAEVLKKCK---KGVRVVNVA  188 (333)
Q Consensus       128 d~~~---------~~~~a~-----~~gv~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~~~~mk---~gailIN~a  188 (333)
                      |+.-         ......     +..-...+|.|+++  +.|+++=..    ...++|.++.++.|.   +..++.=.|
T Consensus        66 D~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLS  141 (254)
T cd00762          66 DRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALS  141 (254)
T ss_pred             CCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECC
Confidence            8652         111111     11112248999999  999988642    335899999999998   899999999


Q ss_pred             CCcccchHhHHhhhhc--C-CceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348         189 RGGIVDENALLDSLKC--G-HCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       189 Rg~~vd~~aL~~aL~~--g-~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~  241 (333)
                      ....-.|-.=.++.+-  | .|.+.+.-.+..+-..  .....-+.-|+++-|=++
T Consensus       142 NPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g--~~~~~~Q~NN~~iFPGig  195 (254)
T cd00762         142 NPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNG--GTYKPGQGNNLYIFPGVA  195 (254)
T ss_pred             CcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCC--ceeecccccceeeccchh
Confidence            8776333222233333  4 3444444332222211  111223677999999886

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=96.74  E-value=0.009  Score=60.29  Aligned_cols=123  Identities=24%  Similarity=0.281  Sum_probs=78.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-----HHHHhcCcccc---ChhhhccCCCEEEEecCCchhhH
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-----EDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      ..+++|.|+|+|.-|.++|+.|+..|++|+++|.....     ......++.+.   ..++...++|+|+.. |.-+-+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~   83 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH   83 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence            44999999999999999999999999999999966533     11123454443   123678889999986 2222222


Q ss_pred             hh-----------ccH-HHHhcc-CCCcEE-EEccCCcccchHhHHhhhhc--------CCceEEEeccCCCCC
Q psy6348         168 NL-----------INA-EVLKKC-KKGVRV-VNVARGGIVDENALLDSLKC--------GHCGGAALDVFCEEP  219 (333)
Q Consensus       168 ~l-----------i~~-~~~~~m-k~gail-IN~aRg~~vd~~aL~~aL~~--------g~i~gaalDV~~~EP  219 (333)
                      -+           +++ ++|-+. ++-.++ |.-+-|+--.+.-+...|++        |.|+..++|+.++++
T Consensus        84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~~  157 (448)
T COG0771          84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQAE  157 (448)
T ss_pred             HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcccC
Confidence            22           222 233332 133343 33345665555555555554        668888999988744

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.73  E-value=0.0045  Score=62.08  Aligned_cols=110  Identities=22%  Similarity=0.257  Sum_probs=70.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH------HHHhcCcccc---ChhhhccCCCEEEEecCCchh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE------DAAKLNIASL---GLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~------~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~  165 (333)
                      .+.+|++.|+|.|.+|.++|+.|...|++|+++|+.....      ...+.|+...   ..++....+|+|+.+.-..+.
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~   81 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD   81 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence            4679999999999999999999999999999999865221      1223355432   234566789999987543332


Q ss_pred             hHhhc----------cH-HHHhc-cCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         166 TKNLI----------NA-EVLKK-CKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       166 t~~li----------~~-~~~~~-mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ..-+.          .. +.+.. .+...+-|--+.|+--...-|...|+.
T Consensus        82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            22111          11 11222 232234444466777777777777764

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=96.72  E-value=0.0049  Score=60.28  Aligned_cols=91  Identities=18%  Similarity=0.223  Sum_probs=57.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC-CCEEEE-EcCCCCH-HHHH-hc----C-----ccccChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF-GMKVIG-FDPMVSV-EDAA-KL----N-----IASLGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~-~~a~-~~----g-----v~~~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ++|+|+|. |.+|+.+++.|... +.++.. +++..+. +... ..    +     +...+.++++.++|++++|+|.. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            47999998 99999999999876 678874 4654321 1111 11    1     11124556667899999999943 


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCcccc
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGGIVD  194 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd  194 (333)
                      ..+.+. ...   .+.|..+|+.|..-=.+
T Consensus        80 ~s~~~~-~~~---~~~G~~VIDlS~~fR~~  105 (346)
T TIGR01850        80 VSAELA-PEL---LAAGVKVIDLSADFRLK  105 (346)
T ss_pred             HHHHHH-HHH---HhCCCEEEeCChhhhcC
Confidence            222222 111   35789999997543333

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.71  E-value=0.029  Score=54.65  Aligned_cols=130  Identities=15%  Similarity=0.058  Sum_probs=83.9

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~  116 (333)
                      +.+...+|+|+|.-+....++-  +++=++.+.+++                 .| .+.|+||++||-+  ++.++++..
T Consensus       116 ~~a~~s~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~~-----------------~g-~l~g~kia~vGD~~~~v~~Sl~~~  175 (332)
T PRK04284        116 TLAEYSGVPVWNGLTDEDHPTQ--VLADFLTAKEHL-----------------KK-PYKDIKFTYVGDGRNNVANALMQG  175 (332)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHHh-----------------cC-CcCCcEEEEecCCCcchHHHHHHH
Confidence            4455678999998666555554  333334333321                 12 3789999999975  889999999


Q ss_pred             HhhCCCEEEEEcCCC---CHH-------HHHhcCcc--c-cChhhhccCCCEEEEecCC--------chhh-----Hhhc
Q psy6348         117 MQAFGMKVIGFDPMV---SVE-------DAAKLNIA--S-LGLEDIWPLADYITVHTPL--------IPQT-----KNLI  170 (333)
Q Consensus       117 l~~~G~~V~~~d~~~---~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~~P~--------t~~t-----~~li  170 (333)
                      +..+|++|....|..   ...       .+++.|..  . .++++.+++||+|..-.=.        .++-     .-.+
T Consensus       176 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v  255 (332)
T PRK04284        176 AAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQV  255 (332)
T ss_pred             HHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcC
Confidence            999999999988753   111       12234532  2 3799999999999984210        0010     1224


Q ss_pred             cHHHHhccC-CCcEEEEcc
Q psy6348         171 NAEVLKKCK-KGVRVVNVA  188 (333)
Q Consensus       171 ~~~~~~~mk-~gailIN~a  188 (333)
                      +++.++.+| +++++..|.
T Consensus       256 ~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        256 NKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             CHHHHhhcCCCCcEEECCC
Confidence            667777775 478888773

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.71  E-value=0.0043  Score=62.55  Aligned_cols=110  Identities=24%  Similarity=0.306  Sum_probs=70.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccCh-hhhccCCCEEEEe--cCCc-h----h
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGL-EDIWPLADYITVH--TPLI-P----Q  165 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l-~ell~~aDvV~l~--~P~t-~----~  165 (333)
                      ++.|++|.|+|+|..|.+.|+.|+..|++|.++|..... ....+.|++.... .+-+.++|+|+..  +|.+ +    .
T Consensus         6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp~i~~~~~~~~~~   85 (460)
T PRK01390          6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSPGVPLTHPKPHWV   85 (460)
T ss_pred             ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECCCCCccCCcccHH
Confidence            367899999999999999999999999999999976432 2234557654322 2335679988753  2211 1    1


Q ss_pred             ---hHhh----ccHH-HHhc-c-----CCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         166 ---TKNL----INAE-VLKK-C-----KKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       166 ---t~~l----i~~~-~~~~-m-----k~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                         ++..    +++- .+.+ +     +...+-|.-+.|+--...-|...|+.
T Consensus        86 v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~  138 (460)
T PRK01390         86 VDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE  138 (460)
T ss_pred             HHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence               1111    3322 2222 2     23455566677888888878888875

>PRK12862 malic enzyme; Reviewed

Probab=96.71  E-value=0.052  Score=58.43  Aligned_cols=158  Identities=12%  Similarity=0.064  Sum_probs=110.1

Q ss_pred             CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-
Q psy6348          44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM-  122 (333)
Q Consensus        44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-  122 (333)
                      .+|+|+|+.-   ..+|=.+++-+++.+|-                  .|..+...++.|.|.|.-|..+|+.+...|. 
T Consensus       160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~------------------~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~  218 (763)
T PRK12862        160 MKIPVFHDDQ---HGTAIIVAAALLNGLKL------------------VGKDIEDVKLVASGAGAAALACLDLLVSLGVK  218 (763)
T ss_pred             CCCceEecCc---ccHHHHHHHHHHHHHHH------------------hCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence            3699999843   45566688888887772                  4567888999999999999999999999998 


Q ss_pred             --EEEEEcCCC----------CH---HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         123 --KVIGFDPMV----------SV---EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       123 --~V~~~d~~~----------~~---~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                        +++.+|+.-          ..   ..++..  ...+|.|+++.+|+++=.-     +.+.+.++.++.|.+..++.=.
T Consensus       219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifal  291 (763)
T PRK12862        219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFAL  291 (763)
T ss_pred             cccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeC
Confidence              788888431          11   112221  2348999999999887542     2589999999999999999999


Q ss_pred             cCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348         188 ARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       188 aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~  241 (333)
                      |....--..+.+..-..|.|.+-+-   ...|  .       +.-|+++-|-++
T Consensus       292 sNP~~E~~p~~a~~~~~~~i~atGr---s~~p--~-------Q~NN~~~FPgi~  333 (763)
T PRK12862        292 ANPTPEILPEEARAVRPDAIIATGR---SDYP--N-------QVNNVLCFPYIF  333 (763)
T ss_pred             CCCcccCCHHHHHHhcCCEEEEECC---cCCC--C-------cccceeeccchh
Confidence            9877532222222222234543331   1112  1       466899999885

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.68  E-value=0.028  Score=56.46  Aligned_cols=132  Identities=16%  Similarity=0.168  Sum_probs=81.0

Q ss_pred             hhHhhCCcEEEECC-CCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHH
Q psy6348          39 TAATRKGVLVLNAP-GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVA  114 (333)
Q Consensus        39 ~aa~~~gI~V~n~p-~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA  114 (333)
                      +.+...+|+|+|.- |....++-.  ++=++.+.+++         |.      .|..+.|+||++||-   +++..+++
T Consensus       198 e~A~~s~vPVINAgdg~~~HPtQa--LaDl~Ti~E~~---------g~------~g~~l~G~kIa~vGD~~~~rv~~Sl~  260 (429)
T PRK11891        198 EFARATNLPVINGGDGPGEHPSQA--LLDLYTIQREF---------SR------LGKIVDGAHIALVGDLKYGRTVHSLV  260 (429)
T ss_pred             HHHHhCCCCEEECCCCCCCCcHHH--HHHHHHHHHHh---------Cc------cCCCcCCCEEEEECcCCCChHHHHHH
Confidence            34566789999987 445555432  22233332211         11      122478999999999   48999999


Q ss_pred             HHHhhC-CCEEEEEcCCC---CHH---HHHhcCc--cc-cChhhhccCCCEEEEecCCchh-----h-----HhhccHHH
Q psy6348         115 LRMQAF-GMKVIGFDPMV---SVE---DAAKLNI--AS-LGLEDIWPLADYITVHTPLIPQ-----T-----KNLINAEV  174 (333)
Q Consensus       115 ~~l~~~-G~~V~~~d~~~---~~~---~a~~~gv--~~-~~l~ell~~aDvV~l~~P~t~~-----t-----~~li~~~~  174 (333)
                      ..+..+ |++|....|..   ..+   .+++.|.  +. .++++.+++||+|....-..+.     .     .-.++++.
T Consensus       261 ~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~el  340 (429)
T PRK11891        261 KLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATRIQKERFADESFEGYTPDFQINQAL  340 (429)
T ss_pred             HHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHHH
Confidence            988876 99999988754   122   2233353  33 3789999999999984421000     0     01235555


Q ss_pred             Hhc-cCCCcEEEEc
Q psy6348         175 LKK-CKKGVRVVNV  187 (333)
Q Consensus       175 ~~~-mk~gailIN~  187 (333)
                      ++. .|+++++..|
T Consensus       341 l~~~ak~dai~MHc  354 (429)
T PRK11891        341 VDAVCKPDTLIMHP  354 (429)
T ss_pred             HhCccCCCcEEECC
Confidence            665 6666666665

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.68  E-value=0.022  Score=55.51  Aligned_cols=128  Identities=20%  Similarity=0.183  Sum_probs=82.4

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~  116 (333)
                      +.+...+|+|+|+-+....++-  +++=++.+.++                 + | .+.|+||++||-+  ++..+++..
T Consensus       117 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~-----------------~-g-~l~g~~va~vGd~~~~v~~Sl~~~  175 (331)
T PRK02102        117 ELAKYSGVPVWNGLTDEWHPTQ--MLADFMTMKEH-----------------F-G-PLKGLKLAYVGDGRNNMANSLMVG  175 (331)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH-----------------h-C-CCCCCEEEEECCCcccHHHHHHHH
Confidence            4456678999999765555543  23333333221                 1 1 3789999999997  788999999


Q ss_pred             HhhCCCEEEEEcCCC---CHH-------HHHhcCcc--c-cChhhhccCCCEEEEecCC---c----hhh-----Hhhcc
Q psy6348         117 MQAFGMKVIGFDPMV---SVE-------DAAKLNIA--S-LGLEDIWPLADYITVHTPL---I----PQT-----KNLIN  171 (333)
Q Consensus       117 l~~~G~~V~~~d~~~---~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~~P~---t----~~t-----~~li~  171 (333)
                      +..+|++|....|..   ..+       .++..|..  . .++++++++||+|..-+=.   .    ++-     .-.++
T Consensus       176 ~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt  255 (331)
T PRK02102        176 GAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVN  255 (331)
T ss_pred             HHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCC
Confidence            999999999987754   111       12334543  2 3789999999999985310   0    010     11245


Q ss_pred             HHHHh-ccCCCcEEEEc
Q psy6348         172 AEVLK-KCKKGVRVVNV  187 (333)
Q Consensus       172 ~~~~~-~mk~gailIN~  187 (333)
                      ++.++ .+|+++++..|
T Consensus       256 ~ell~~~~~~d~ivmH~  272 (331)
T PRK02102        256 MDLMKATGNPDVIFMHC  272 (331)
T ss_pred             HHHHhhhcCCCCEEECC
Confidence            66666 46777777777

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.65  E-value=0.033  Score=54.33  Aligned_cols=131  Identities=17%  Similarity=0.167  Sum_probs=84.7

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~  116 (333)
                      +.|..-+|+|+|.-+....++-  +++=++.+.++                 +.|..+.|++|++||=+  ++..+++..
T Consensus       116 ~~a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~-----------------~g~~~l~gl~va~vGD~~~~v~~S~~~~  176 (334)
T PRK12562        116 TLAEYAGVPVWNGLTNEFHPTQ--LLADLLTMQEH-----------------LPGKAFNEMTLVYAGDARNNMGNSMLEA  176 (334)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH-----------------hCCCCcCCcEEEEECCCCCCHHHHHHHH
Confidence            4456678999999765555543  33333333221                 11234789999999976  789999999


Q ss_pred             HhhCCCEEEEEcCCC---CHH---H----HHhcCcc--c-cChhhhccCCCEEEEec------CCc--hh-----hHhhc
Q psy6348         117 MQAFGMKVIGFDPMV---SVE---D----AAKLNIA--S-LGLEDIWPLADYITVHT------PLI--PQ-----TKNLI  170 (333)
Q Consensus       117 l~~~G~~V~~~d~~~---~~~---~----a~~~gv~--~-~~l~ell~~aDvV~l~~------P~t--~~-----t~~li  170 (333)
                      +..+|++|....|..   ..+   .    ++..|..  . .++++.++++|+|..-.      ...  ++     -.-.+
T Consensus       177 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v  256 (334)
T PRK12562        177 AALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQV  256 (334)
T ss_pred             HHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcC
Confidence            999999999888753   111   1    1233532  2 37999999999998853      100  01     01124


Q ss_pred             cHHHHhcc-CCCcEEEEcc
Q psy6348         171 NAEVLKKC-KKGVRVVNVA  188 (333)
Q Consensus       171 ~~~~~~~m-k~gailIN~a  188 (333)
                      +++.++.. |+++++..|.
T Consensus       257 ~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        257 NSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             CHHHHHhhcCCCCEEECCC
Confidence            66777774 7888888884

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.64  E-value=0.013  Score=54.60  Aligned_cols=87  Identities=15%  Similarity=0.215  Sum_probs=61.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC  178 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~m  178 (333)
                      .++-|+|.|.+++.+++.++.+|++|+++|++....           ....+..++.+....|          .+.+..+
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~-----------~~~~~~~~~~~~~~~~----------~~~~~~~  159 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF-----------PEDLPDGVATLVTDEP----------EAEVAEA  159 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc-----------cccCCCCceEEecCCH----------HHHHhcC
Confidence            589999999999999999999999999999864211           0111233443332222          2223335


Q ss_pred             CCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         179 KKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       179 k~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                      .++..+|=+.++.-.|.+.|..+|++..
T Consensus       160 ~~~t~vvi~th~h~~D~~~L~~aL~~~~  187 (246)
T TIGR02964       160 PPGSYFLVLTHDHALDLELCHAALRRGD  187 (246)
T ss_pred             CCCcEEEEEeCChHHHHHHHHHHHhCCC
Confidence            6778888888999999999999995433

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.63  E-value=0.0044  Score=58.86  Aligned_cols=69  Identities=17%  Similarity=0.127  Sum_probs=49.7

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcCc----ccc----ChhhhccCCCEEEEecCCc
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLNI----ASL----GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~gv----~~~----~l~ell~~aDvV~l~~P~t  163 (333)
                      .+.|+++.|||.|.+|++++..|...|+ +|++++|+...  +.+.+.+.    ...    ++.+.+.++|+|+.++|..
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g  201 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD  201 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence            4679999999999999999999999998 69999996532  12222221    111    2235567889999998853

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PLN02527 aspartate carbamoyltransferase

Probab=96.62  E-value=0.035  Score=53.44  Aligned_cols=128  Identities=17%  Similarity=0.160  Sum_probs=80.5

Q ss_pred             hhHhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC---hHHHHHH
Q psy6348          39 TAATRKGVLVLNAPG-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG---RIGREVA  114 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG---~IG~~vA  114 (333)
                      +.+..-.|+|+|.-. ....++-  +++=++.+.++                  .| ++.|+||++||-+   ++..+++
T Consensus       112 ~~a~~~~vPVINa~~g~~~HPtQ--~LaDl~Ti~e~------------------~g-~l~g~kva~vGD~~~~rv~~Sl~  170 (306)
T PLN02527        112 RAAATAEIPVINAGDGPGQHPTQ--ALLDVYTIQRE------------------IG-RLDGIKVGLVGDLANGRTVRSLA  170 (306)
T ss_pred             HHHHhCCCCEEECCCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCCEEEEECCCCCChhHHHHH
Confidence            445567899999854 3445543  22223333221                  12 3789999999965   7899999


Q ss_pred             HHHhhC-CCEEEEEcCCC---CHH---HHHhcCccc---cChhhhccCCCEEEEecCCch------h-h-----HhhccH
Q psy6348         115 LRMQAF-GMKVIGFDPMV---SVE---DAAKLNIAS---LGLEDIWPLADYITVHTPLIP------Q-T-----KNLINA  172 (333)
Q Consensus       115 ~~l~~~-G~~V~~~d~~~---~~~---~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~------~-t-----~~li~~  172 (333)
                      ..+..+ |++|....|..   ..+   .+++.|..+   .++++.+++||+|....--.+      . -     .-.+++
T Consensus       171 ~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~  250 (306)
T PLN02527        171 YLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDK  250 (306)
T ss_pred             HHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEECCcchhhhcchHHHHHHhCCCceECH
Confidence            988887 99999887743   221   233345432   379999999999998431100      0 1     123455


Q ss_pred             HHHhccCCCcEEEEc
Q psy6348         173 EVLKKCKKGVRVVNV  187 (333)
Q Consensus       173 ~~~~~mk~gailIN~  187 (333)
                      +.++..|+++++..|
T Consensus       251 ~ll~~a~~~~ivmHc  265 (306)
T PLN02527        251 KVMDVLPKHAVVMHP  265 (306)
T ss_pred             HHHhccCCCCEEECC
Confidence            666667777777766

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.62  E-value=0.0064  Score=59.35  Aligned_cols=64  Identities=30%  Similarity=0.358  Sum_probs=43.6

Q ss_pred             CEEEEEecChHHHHHHHHHhh-CCCEEEEE-cCCCCHH--HHHhcC------------------cccc-ChhhhccCCCE
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-FGMKVIGF-DPMVSVE--DAAKLN------------------IASL-GLEDIWPLADY  155 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~--~a~~~g------------------v~~~-~l~ell~~aDv  155 (333)
                      .+|||+|+|+||+.+++.+.. -++++.+. |+.....  .++..|                  +... ++++++.++|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            379999999999999988764 47888775 4332111  122122                  2222 56788889999


Q ss_pred             EEEecCC
Q psy6348         156 ITVHTPL  162 (333)
Q Consensus       156 V~l~~P~  162 (333)
                      |+.|+|.
T Consensus        82 VIdaT~~   88 (341)
T PRK04207         82 VVDATPG   88 (341)
T ss_pred             EEECCCc
Confidence            9999884

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.61  E-value=0.0053  Score=62.67  Aligned_cols=64  Identities=19%  Similarity=0.174  Sum_probs=48.1

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHhc--Ccccc--C-hhhhccCCCEEEEe
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---EDAAKL--NIASL--G-LEDIWPLADYITVH  159 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~--gv~~~--~-l~ell~~aDvV~l~  159 (333)
                      +.++++.|+|+|..|.++|+.|++.|++|.++|.....   +..++.  |++..  + ..+.+.++|+|+..
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s   76 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS   76 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence            56899999999999999999999999999999976522   223333  44332  1 23456789999986

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.59  E-value=0.0066  Score=60.78  Aligned_cols=110  Identities=18%  Similarity=0.178  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-----HHHHhcCcccc---ChhhhccC-CCEEEEec--C-C
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-----EDAAKLNIASL---GLEDIWPL-ADYITVHT--P-L  162 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-----~~a~~~gv~~~---~l~ell~~-aDvV~l~~--P-~  162 (333)
                      ++.||++.|+|.|.+|.++|+.|++.|++|+++|.....     +...+.|+...   ...+++.+ .|+|+..-  | .
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~   81 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT   81 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence            467999999999999999999999999999999975421     22344466542   23344444 89887754  2 2


Q ss_pred             chhh-------HhhccHHHH-hcc-CCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         163 IPQT-------KNLINAEVL-KKC-KKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       163 t~~t-------~~li~~~~~-~~m-k~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      .+..       ..++.+.++ ..+ +...+-|--+.|+--...-+...|+.
T Consensus        82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~  132 (447)
T PRK02472         82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA  132 (447)
T ss_pred             CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            2211       112333333 233 33345555567877777777777764

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.58  E-value=0.0061  Score=61.58  Aligned_cols=110  Identities=19%  Similarity=0.175  Sum_probs=71.8

Q ss_pred             cCCCEEEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEec--CC-chhhH
Q psy6348          96 LYGKTLAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVHT--PL-IPQTK  167 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~~--P~-t~~t~  167 (333)
                      .+++++.|+|+|..|.+ +|+.|+..|++|.++|.....  +..++.|+...  .-.+.+.++|+|+..-  |. ++..+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~   84 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV   84 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence            46789999999999999 799999999999999986532  22344576543  2234567899888753  32 22222


Q ss_pred             -------hhccHHHH-hc-cCC-CcEEEEccCCcccchHhHHhhhhcC
Q psy6348         168 -------NLINAEVL-KK-CKK-GVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       168 -------~li~~~~~-~~-mk~-gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                             .++++.++ .. +++ ..+-|--+.|+--...-+...|+..
T Consensus        85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~  132 (461)
T PRK00421         85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEA  132 (461)
T ss_pred             HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhc
Confidence                   23444333 33 332 3455555668877777777777654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=96.58  E-value=0.0052  Score=59.04  Aligned_cols=64  Identities=19%  Similarity=0.167  Sum_probs=45.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHH--HHhcC-cc--------ccChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVED--AAKLN-IA--------SLGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~g-v~--------~~~l~ell~~aDvV~l~~P~  162 (333)
                      ++|+|||.|.+|..+|..+...|  .+|..||+......  +.++. ..        ...-.+.+++||+|+++++.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDYADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCHHHhCCCCEEEEccCC
Confidence            37999999999999999998888  58999998753222  11111 10        01223568999999999985

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.58  E-value=0.013  Score=56.47  Aligned_cols=113  Identities=15%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc---------C---ccc-cChhhhccCCCEEEEecCC-
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL---------N---IAS-LGLEDIWPLADYITVHTPL-  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~---------g---v~~-~~l~ell~~aDvV~l~~P~-  162 (333)
                      .||+|||.|.||..+|..+...|.  ++..||..........+         .   +.. .+.+ .+++||+|+++.-. 
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence            589999999999999988876554  79999986643222111         1   111 1344 48999999996432 


Q ss_pred             -ch-hhHh-hc--cH-------HHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEEe
Q psy6348         163 -IP-QTKN-LI--NA-------EVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAAL  212 (333)
Q Consensus       163 -t~-~t~~-li--~~-------~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaal  212 (333)
                       .+ .++- ++  +.       +.+....+++++|+++-..=+-...+.+.  +...++.|.+.
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt  146 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGC  146 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCc
Confidence             11 2331 11  11       23344567899999984332333333333  44556666643

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.58  E-value=0.0079  Score=58.70  Aligned_cols=90  Identities=21%  Similarity=0.170  Sum_probs=62.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC---------------------CHH-----HHHhc--Cccc-
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV---------------------SVE-----DAAKL--NIAS-  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---------------------~~~-----~a~~~--gv~~-  143 (333)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..                     ++.     ..++.  +++. 
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~i~   99 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVEIV   99 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHHCCCcEEE
Confidence            46899999999999999999999999998 788888753                     011     11111  1211 


Q ss_pred             --------cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         144 --------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       144 --------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                              .+++++++++|+|+.++ .+.+++-+++.-..+   .+.-+|..
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~---~~ip~i~~  147 (338)
T PRK12475        100 PVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK---YNIPWIYG  147 (338)
T ss_pred             EEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH---cCCCEEEE
Confidence                    13577889999999988 567788777665543   33345544

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.56  E-value=0.0085  Score=59.19  Aligned_cols=87  Identities=30%  Similarity=0.395  Sum_probs=60.3

Q ss_pred             cCCCEEEEEecCh----------HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhc-Ccccc-ChhhhccCCCEEEEecCCc
Q psy6348          96 LYGKTLAVLGLGR----------IGREVALRMQAFGMKVIGFDPMVSVEDAAKL-NIASL-GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        96 l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-gv~~~-~l~ell~~aDvV~l~~P~t  163 (333)
                      |.|||+||.|+--          --..++++|+..|.+|.+|||.........+ ++.+. +++++++.||++++++. .
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w  386 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W  386 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence            8899999999842          4567899999999999999997644333322 25554 79999999999999875 2


Q ss_pred             hhhHhhccHHHHhccCCCcEEEE
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN  186 (333)
                      ++-+.+ +-+.+ .||. ..+++
T Consensus       387 ~ef~~~-d~~~~-~m~~-~~v~D  406 (414)
T COG1004         387 DEFRDL-DFEKL-LMKT-PVVID  406 (414)
T ss_pred             HHHhcc-Chhhh-hccC-CEEEe
Confidence            333333 22222 4553 45554

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.56  E-value=0.013  Score=56.13  Aligned_cols=105  Identities=18%  Similarity=0.129  Sum_probs=72.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhH---hh---
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTK---NL---  169 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~---~l---  169 (333)
                      .|++++|||--.=-..++++|.+.|++|+.+.-.  .+.....|++.. +.+++++++|+|++-+|.+.+..   ..   
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~--~~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~   78 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFD--QLDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN   78 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEecc--ccccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence            3789999998888888999999999999875421  111223477666 56888999999999988654321   11   


Q ss_pred             ----ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         170 ----INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       170 ----i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                          ++.+.++.|++|..++ ++.+..-    +-+.+++.++.
T Consensus        79 ~~~~~~~~~l~~l~~~~~v~-~G~~~~~----~~~~~~~~gi~  116 (296)
T PRK08306         79 EKLVLTEELLELTPEHCTIF-SGIANPY----LKELAKETNRK  116 (296)
T ss_pred             cCCcchHHHHHhcCCCCEEE-EecCCHH----HHHHHHHCCCe
Confidence                3577899999998544 3443322    33455566665

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.56  E-value=0.0087  Score=62.75  Aligned_cols=91  Identities=19%  Similarity=0.256  Sum_probs=63.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----C---hhhh-ccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----G---LEDI-WPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----~---l~el-l~~aDvV~l~~P~t~~t~  167 (333)
                      ..++-|+|+|++|+.+++.|...|.++++.|.++. .+.+++.|....     +   ++++ +++||.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            45799999999999999999999999999998763 345566665432     2   2222 678999999999765554


Q ss_pred             hhccHHHHhccCCCcEEEEccCC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg  190 (333)
                      .++  .....+.|...++--+|.
T Consensus       480 ~i~--~~~r~~~p~~~IiaRa~~  500 (601)
T PRK03659        480 KIV--ELCQQHFPHLHILARARG  500 (601)
T ss_pred             HHH--HHHHHHCCCCeEEEEeCC
Confidence            443  233445566666654443

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=96.56  E-value=0.0062  Score=58.82  Aligned_cols=93  Identities=12%  Similarity=0.161  Sum_probs=59.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCc----------cc-cChhhhccCCCEEEEecCC-
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNI----------AS-LGLEDIWPLADYITVHTPL-  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv----------~~-~~l~ell~~aDvV~l~~P~-  162 (333)
                      .++||+|||.|.+|..+|..+...|.  ++..||..........+..          .. .+-.+.+++||+|+++.-. 
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~~   84 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGAP   84 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCCC
Confidence            46799999999999999999988887  8999998654322222111          11 1223568999999997542 


Q ss_pred             -ch-hhH--------hhcc--HHHHhccCCCcEEEEccC
Q psy6348         163 -IP-QTK--------NLIN--AEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 -t~-~t~--------~li~--~~~~~~mk~gailIN~aR  189 (333)
                       .+ .++        .++.  .+.+....+++++|+++-
T Consensus        85 ~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsN  123 (315)
T PRK00066         85 QKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASN  123 (315)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence             11 122        1111  112222346889999974

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.55  E-value=0.014  Score=56.20  Aligned_cols=93  Identities=13%  Similarity=0.152  Sum_probs=63.0

Q ss_pred             CcEEEEC-CCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHHHHhhC
Q psy6348          45 GVLVLNA-PGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVALRMQAF  120 (333)
Q Consensus        45 gI~V~n~-p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~~l~~~  120 (333)
                      .|+|+|. -|....++-.  ++=++.+..+                  .| .+.|++|++||=   +++..+++..+..+
T Consensus       124 ~vPvINag~g~~~HPtQa--LaDl~Ti~e~------------------~g-~l~g~~va~vGD~~~~rv~~Sl~~~~a~~  182 (310)
T PRK13814        124 SGVVINAGDGNHQHPSQA--LIDLMTIKQH------------------KP-HWNKLCVTIIGDIRHSRVANSLMDGLVTM  182 (310)
T ss_pred             CCCeEECCcCCCCCchHH--HHHHHHHHHH------------------hC-CcCCcEEEEECCCCCCcHHHHHHHHHHHc
Confidence            6999998 4555555542  3333333221                  12 267999999998   59999999999999


Q ss_pred             CC-EEEEEcCCCC-HHHHHhcCccc-cChhhhccCCCEEEE
Q psy6348         121 GM-KVIGFDPMVS-VEDAAKLNIAS-LGLEDIWPLADYITV  158 (333)
Q Consensus       121 G~-~V~~~d~~~~-~~~a~~~gv~~-~~l~ell~~aDvV~l  158 (333)
                      |+ +|....|..- +.......++. .++++.++++|+|..
T Consensus       183 g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~  223 (310)
T PRK13814        183 GVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT  223 (310)
T ss_pred             CCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence            99 9999887541 11111112333 378999999999987

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.55  E-value=0.006  Score=61.98  Aligned_cols=112  Identities=16%  Similarity=0.122  Sum_probs=70.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH--HHHhcCcccc---ChhhhccCCCEEEEe--cC-Cchh
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE--DAAKLNIASL---GLEDIWPLADYITVH--TP-LIPQ  165 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~gv~~~---~l~ell~~aDvV~l~--~P-~t~~  165 (333)
                      .++.++++.|+|+|..|.++|+.|...|++|.++|+.....  ...+.|++..   ...+.+.++|+|+..  +| .++.
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spgi~~~~p~   90 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPGWRPDSPL   90 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCCCCCCCHH
Confidence            35788999999999999999999999999999999765322  1244577653   223456789988876  23 2232


Q ss_pred             hH-------hhccHHHHhc-------c-CC-CcEEEEccCCcccchHhHHhhhhcC
Q psy6348         166 TK-------NLINAEVLKK-------C-KK-GVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       166 t~-------~li~~~~~~~-------m-k~-gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      ..       .++++-.+..       + ++ ..+-|--+-|+--...-|...|+..
T Consensus        91 ~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         91 LVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             HHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            21       1123333321       1 12 2344444567777777777777653

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.54  E-value=0.0086  Score=58.64  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=60.9

Q ss_pred             CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH--HHH---HhcCcc--c-cChhhhccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV--EDA---AKLNIA--S-LGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a---~~~gv~--~-~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      -++++|||.|..+...++.+.. +.. +|.+|+++...  +.+   ++.++.  . .++++++++||+|+.++|.+ +..
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~  207 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA  207 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence            4689999999999888765543 344 79999997633  111   222432  2 37999999999999999732 222


Q ss_pred             hhccHHHHhccCCCcEEEEccC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aR  189 (333)
                      -++..+   .+|+|+.+.-++.
T Consensus       208 Pvl~~~---~lkpG~hV~aIGs  226 (346)
T PRK07589        208 TILTDD---MVEPGMHINAVGG  226 (346)
T ss_pred             ceecHH---HcCCCcEEEecCC
Confidence            456554   4699998887664

>PRK12861 malic enzyme; Reviewed

Probab=96.52  E-value=0.078  Score=56.90  Aligned_cols=178  Identities=12%  Similarity=0.039  Sum_probs=118.9

Q ss_pred             cceEEEcccCcCccChh---------hHhh-CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCC
Q psy6348          23 LQVVGRAGTGVDNIDLT---------AATR-KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT   92 (333)
Q Consensus        23 Lk~I~~~g~G~d~iD~~---------aa~~-~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~   92 (333)
                      ++.|.....|++.=|+.         ..++ ..|+|+|+.   -..+|=.+++-+++.+|-                  .
T Consensus       125 v~a~~~~fg~i~lED~~~p~~f~il~~~~~~~~ipvf~DD---~qGTa~v~lA~llnal~~------------------~  183 (764)
T PRK12861        125 IAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFHDD---QHGTAITVSAAFINGLKV------------------V  183 (764)
T ss_pred             HHHHHhhcCCceeeeccCchHHHHHHHHHhcCCCCeeccc---cchHHHHHHHHHHHHHHH------------------h
Confidence            45555555555544432         1223 279999984   345666788888888772                  4


Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC---EEEEEcCCC----------CH---HHHHhcCccccChhhhccCCCEE
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM---KVIGFDPMV----------SV---EDAAKLNIASLGLEDIWPLADYI  156 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~----------~~---~~a~~~gv~~~~l~ell~~aDvV  156 (333)
                      |..+...++.|.|.|.-|..+|+.+...|.   +++.+|+.-          ..   ..++.  ....+|.|+++.+|++
T Consensus       184 gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~--~~~~~L~eai~~advl  261 (764)
T PRK12861        184 GKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE--TDARTLAEVIGGADVF  261 (764)
T ss_pred             CCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh--cCCCCHHHHHhcCCEE
Confidence            567888999999999999999999999998   789888432          11   11222  1234899999999977


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC-ceEEEeccCCCCCCCCccchhhcCCCcEE
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH-CGGAALDVFCEEPPKSEQTFELIKHPKVI  235 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~-i~gaalDV~~~EP~~~~~~~~L~~~pnvi  235 (333)
                      +=. .    +.+.+.++.++.|.+.+++.=.|....--..+.+.+ ..|+ |.  +. --...|  .       +.-|++
T Consensus       262 iG~-S----~~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~~-~~g~aiv--aT-Grs~~p--n-------Q~NN~l  323 (764)
T PRK12861        262 LGL-S----AGGVLKAEMLKAMAARPLILALANPTPEIFPELAHA-TRDDVVI--AT-GRSDYP--N-------QVNNVL  323 (764)
T ss_pred             EEc-C----CCCCCCHHHHHHhccCCEEEECCCCCccCCHHHHHh-cCCCEEE--Ee-CCcCCC--C-------ccceee
Confidence            653 2    268999999999999999999998775322232222 2244 33  22 111112  1       466999


Q ss_pred             EccCCC
Q psy6348         236 VTPHLG  241 (333)
Q Consensus       236 ~TPHi~  241 (333)
                      +-|-++
T Consensus       324 ~FPgi~  329 (764)
T PRK12861        324 CFPYIF  329 (764)
T ss_pred             ecchhh
Confidence            999885

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.52  E-value=0.0073  Score=62.60  Aligned_cols=86  Identities=12%  Similarity=0.283  Sum_probs=60.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----C---hhh-hccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----G---LED-IWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----~---l~e-ll~~aDvV~l~~P~t~~t~~  168 (333)
                      .++-|+|+|++|+.+|+.|+..|.+|++.|.+.. .+.+++.|....     +   +++ -++++|.++++++..+++..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            5789999999999999999999999999998763 344556665432     1   222 25789999999987666555


Q ss_pred             hccHHHHhccCCCcEEEE
Q psy6348         169 LINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       169 li~~~~~~~mk~gailIN  186 (333)
                      ++.. ..+ +.++..+|-
T Consensus       498 iv~~-~~~-~~~~~~iia  513 (558)
T PRK10669        498 IVAS-ARE-KRPDIEIIA  513 (558)
T ss_pred             HHHH-HHH-HCCCCeEEE
Confidence            5432 222 345555553

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.49  E-value=0.018  Score=57.85  Aligned_cols=96  Identities=20%  Similarity=0.224  Sum_probs=64.0

Q ss_pred             ccccCCCEEEEEec----------ChHHHHHHHHHhhCCCEEEEEcCCCCHHHH-HhcCccccChhh-hccCCCEEEEec
Q psy6348          93 GTELYGKTLAVLGL----------GRIGREVALRMQAFGMKVIGFDPMVSVEDA-AKLNIASLGLED-IWPLADYITVHT  160 (333)
Q Consensus        93 g~~l~gktvGIIGl----------G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a-~~~gv~~~~l~e-ll~~aDvV~l~~  160 (333)
                      +..+.|++|+|+|+          ..-+..+++.|...|.+|.+|||....+.. +..+..  .+++ .+..||.|++++
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~--~~~~~~~~~ad~vvi~t  386 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGII--PVSEVKSSHYDAIIVAV  386 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcc--cchhhhhcCCCEEEEcc
Confidence            34578999999999          446788999999999999999998644333 223332  1222 467899999998


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      . .++-+.+-.+...+.||...++|++ |+-+
T Consensus       387 ~-h~~f~~~~~~~~~~~~~~~~~iiD~-r~~~  416 (425)
T PRK15182        387 G-HQQFKQMGSEDIRGFGKDKHVLYDL-KYVL  416 (425)
T ss_pred             C-CHHhhcCCHHHHHHhcCCCCEEEEC-CCCC
Confidence            7 3444433222333446645688884 5544

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.47  E-value=0.028  Score=54.15  Aligned_cols=125  Identities=20%  Similarity=0.193  Sum_probs=78.7

Q ss_pred             hHhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHH
Q psy6348          40 AATRKGVLVLNAPG-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVAL  115 (333)
Q Consensus        40 aa~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~  115 (333)
                      .+...+|+|+|.-. ....++-.  ++=++.+.++                  .| .+.|+||++||=   +++..+++.
T Consensus       118 ~a~~~~vPVINa~~g~~~HPtQ~--LaDl~Ti~e~------------------~G-~l~g~kv~~vGD~~~~~v~~Sl~~  176 (305)
T PRK00856        118 LAESSDVPVINAGDGSHQHPTQA--LLDLLTIREE------------------FG-RLEGLKVAIVGDIKHSRVARSNIQ  176 (305)
T ss_pred             HHHHCCCCEEECCCCCCCCcHHH--HHHHHHHHHH------------------hC-CCCCCEEEEECCCCCCcHHHHHHH
Confidence            34557899999964 34455432  2223332221                  12 378999999987   589999999


Q ss_pred             HHhhCCCEEEEEcCCC-CHHHHHhcCccc-cChhhhccCCCEEEEecCCc--------hhh-----HhhccHHHHhccCC
Q psy6348         116 RMQAFGMKVIGFDPMV-SVEDAAKLNIAS-LGLEDIWPLADYITVHTPLI--------PQT-----KNLINAEVLKKCKK  180 (333)
Q Consensus       116 ~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t--------~~t-----~~li~~~~~~~mk~  180 (333)
                      .+..+|+++....|.. .+....  .... .++++.+++||+|....=..        ++-     .-.++++.++.+|+
T Consensus       177 ~~~~~g~~~~~~~P~~~~~~~~~--~~~~~~d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~  254 (305)
T PRK00856        177 ALTRLGAEVRLIAPPTLLPEGMP--EYGVHTDLDEVIEDADVVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKP  254 (305)
T ss_pred             HHHHcCCEEEEECCcccCccccc--ceEEECCHHHHhCCCCEEEECCcccccccccchHHHHHHhccCccCHHHHhhcCC
Confidence            9999999999998854 111111  1222 37899999999998743100        011     11245666666667


Q ss_pred             CcEEEEc
Q psy6348         181 GVRVVNV  187 (333)
Q Consensus       181 gailIN~  187 (333)
                      ++++..|
T Consensus       255 ~~~~mHc  261 (305)
T PRK00856        255 DAIVMHP  261 (305)
T ss_pred             CCEEECC
Confidence            7776666

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.45  E-value=0.0088  Score=59.88  Aligned_cols=69  Identities=13%  Similarity=0.150  Sum_probs=53.3

Q ss_pred             ccccCCCEEEEEec----------ChHHHHHHHHHhhCC-CEEEEEcCCCCHHHHH-hcCccccChhhhccCCCEEEEec
Q psy6348          93 GTELYGKTLAVLGL----------GRIGREVALRMQAFG-MKVIGFDPMVSVEDAA-KLNIASLGLEDIWPLADYITVHT  160 (333)
Q Consensus        93 g~~l~gktvGIIGl----------G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~-~~gv~~~~l~ell~~aDvV~l~~  160 (333)
                      +.++.|++|+|+|+          ..-...+++.|+..| .+|.+|||........ ...+...++++.+++||+|++++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  394 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV  394 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence            45688999999998          346778999999996 9999999986432211 11233458899999999999998


Q ss_pred             C
Q psy6348         161 P  161 (333)
Q Consensus       161 P  161 (333)
                      +
T Consensus       395 ~  395 (415)
T PRK11064        395 D  395 (415)
T ss_pred             C
Confidence            7

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=96.44  E-value=0.01  Score=56.55  Aligned_cols=38  Identities=24%  Similarity=0.373  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~  131 (333)
                      .++.||++.|+|.|.+|++++..|...|.+ |.+++|..
T Consensus       122 ~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        122 VDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            357789999999999999999999999996 99999874

>PRK11579 putative oxidoreductase; Provisional

Probab=96.38  E-value=0.013  Score=56.82  Aligned_cols=65  Identities=14%  Similarity=0.187  Sum_probs=44.6

Q ss_pred             CEEEEEecChHHHH-HHHHHhh-CCCEEEE-EcCCCCHHHHHhc-Ccc-ccChhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQA-FGMKVIG-FDPMVSVEDAAKL-NIA-SLGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~-~G~~V~~-~d~~~~~~~a~~~-gv~-~~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+. .+..++. -++++.+ +|+..... .... +.. +.+++++++  +.|+|++++|...
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~   76 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-KADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDT   76 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-HhhCCCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            38999999999985 4565554 4788875 67754222 2233 333 348999996  5799999999543

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=96.36  E-value=0.0058  Score=52.07  Aligned_cols=63  Identities=17%  Similarity=0.289  Sum_probs=44.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHhcCc-----------cc-cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQA--FGMKVIGFDPMVSVEDAAKLNI-----------AS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~gv-----------~~-~~l~ell~~aDvV~l~~P  161 (333)
                      .||+|||. |.+|+.+|..|..  ++-++..||..........+.+           .. ....+.+++||+|+++.-
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag   78 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG   78 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence            38999999 9999999988875  4458999998743222221111           11 156788999999999873

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.35  E-value=0.018  Score=55.76  Aligned_cols=87  Identities=22%  Similarity=0.192  Sum_probs=58.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCC---C-CHHHHHhcCccccChh-----h--hccCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPM---V-SVEDAAKLNIASLGLE-----D--IWPLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~---~-~~~~a~~~gv~~~~l~-----e--ll~~aDvV~l~~P~t~~  165 (333)
                      .|+++.|+|.|.+|...++.++..|.+|++.++.   . ..+.++++|+..+...     +  .....|+|+-++.... 
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~-  250 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP-  250 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH-
Confidence            6889999999999999999999999999999873   2 3345666776543211     0  1234677777664211 


Q ss_pred             hHhhccHHHHhccCCCcEEEEcc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~a  188 (333)
                         .+ .+.++.|+++..++.++
T Consensus       251 ---~~-~~~~~~l~~~G~~v~~G  269 (355)
T cd08230         251 ---LA-FEALPALAPNGVVILFG  269 (355)
T ss_pred             ---HH-HHHHHHccCCcEEEEEe
Confidence               11 34556677777666654

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=96.35  E-value=0.0078  Score=59.20  Aligned_cols=62  Identities=34%  Similarity=0.417  Sum_probs=45.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcCc--ccc---ChhhhccCCCEEEEe
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLNI--ASL---GLEDIWPLADYITVH  159 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~gv--~~~---~l~ell~~aDvV~l~  159 (333)
                      .++|||||-|..|+.++..++.+|++|+++|+.......  ...-+  .+.   .+.++++.||+|+..
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e   70 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYE   70 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeC
Confidence            479999999999999999999999999999987632111  11111  111   366778889988753

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.34  E-value=0.0093  Score=54.72  Aligned_cols=91  Identities=24%  Similarity=0.253  Sum_probs=62.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHH-----------------------HHHhc--Ccc--c-
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVE-----------------------DAAKL--NIA--S-  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~-----------------------~a~~~--gv~--~-  143 (333)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. +..                       ..++.  .++  . 
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~i~~~   96 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAINPDVEIEAY   96 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHhCCCCEEEEe
Confidence            46889999999999999999999999998 777777543 110                       00111  011  1 


Q ss_pred             ------cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         144 ------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       144 ------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                            .+++++++++|+|+.|+. +..++..+++...+   .+.-+|.++
T Consensus        97 ~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~---~~ip~i~~g  143 (228)
T cd00757          97 NERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVK---LGKPLVSGA  143 (228)
T ss_pred             cceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence                  124567889999998876 56777777766554   345577764

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.33  E-value=0.013  Score=61.77  Aligned_cols=88  Identities=17%  Similarity=0.229  Sum_probs=61.1

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----Ch---h-hhccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----GL---E-DIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----~l---~-ell~~aDvV~l~~P~t~~t~  167 (333)
                      ..++-|+|+|++|+.+|+.|.+.|.++++.|..+. .+..++.|....     +.   + .-++++|.++++++..+.+.
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            46899999999999999999999999999998763 344566666432     22   2 23568999999998655544


Q ss_pred             hhccHHHHhccCCCcEEEEc
Q psy6348         168 NLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~  187 (333)
                      .++  ...+.+.|+..++--
T Consensus       480 ~i~--~~ar~~~p~~~iiaR  497 (621)
T PRK03562        480 QLV--ELVKEHFPHLQIIAR  497 (621)
T ss_pred             HHH--HHHHHhCCCCeEEEE
Confidence            442  233444555555443

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.33  E-value=0.058  Score=51.22  Aligned_cols=182  Identities=16%  Similarity=0.108  Sum_probs=114.8

Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhC----CC-------EEEEE
Q psy6348          59 ACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF----GM-------KVIGF  127 (333)
Q Consensus        59 vAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~----G~-------~V~~~  127 (333)
                      +|--+++-+++..|-                  .|..|...++.|+|.|.-|..+|+.+...    |+       +++.+
T Consensus         4 Ta~V~lAgllnAlk~------------------~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~v   65 (279)
T cd05312           4 TAAVALAGLLAALRI------------------TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLV   65 (279)
T ss_pred             HHHHHHHHHHHHHHH------------------hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEE
Confidence            455577777777763                  35678889999999999999999999876    87       78888


Q ss_pred             cCCC-------C--H---HHHHhcC-ccccChhhhcc--CCCEEEEecCCchhhHhhccHHHHhccC---CCcEEEEccC
Q psy6348         128 DPMV-------S--V---EDAAKLN-IASLGLEDIWP--LADYITVHTPLIPQTKNLINAEVLKKCK---KGVRVVNVAR  189 (333)
Q Consensus       128 d~~~-------~--~---~~a~~~g-v~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~~~~~mk---~gailIN~aR  189 (333)
                      |+.-       .  .   ..++... -...+|.|+++  ++|+++=+-    ..-++|.++.++.|.   +..++.=.|.
T Consensus        66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSN  141 (279)
T cd05312          66 DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLS----GVGGAFTEEVVRAMAKSNERPIIFALSN  141 (279)
T ss_pred             cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeC----CCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence            8652       1  1   1111111 02248999999  889888653    234899999999998   8999999998


Q ss_pred             CcccchHhHHhhhh--cCC-ceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCC-----cHHHHHHHHHHHHHHHHH
Q psy6348         190 GGIVDENALLDSLK--CGH-CGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAS-----TKEAQIRVAVEIAEQFIA  261 (333)
Q Consensus       190 g~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~-----t~ea~~~~~~~~~~~i~~  261 (333)
                      ...-.|-.=.++.+  .|+ |.+.+.-+-..+....  ...-=+.-|+++-|=++--     ...--+.|...+++.|.+
T Consensus       142 Pt~~~E~~pe~a~~~t~G~ai~ATGsPf~pv~~~Gr--~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~  219 (279)
T cd05312         142 PTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGK--TYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALAS  219 (279)
T ss_pred             cCCccccCHHHHHHhhcCCEEEEeCCCCCCeeeCCe--EecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHH
Confidence            86633433333333  355 5544432211111100  0111256799999988621     112224556666666666


Q ss_pred             hHc
Q psy6348         262 LAN  264 (333)
Q Consensus       262 ~~~  264 (333)
                      +..
T Consensus       220 ~~~  222 (279)
T cd05312         220 LVT  222 (279)
T ss_pred             hCC
Confidence            443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK10637 cysG siroheme synthase; Provisional

Probab=96.30  E-value=0.015  Score=59.07  Aligned_cols=90  Identities=13%  Similarity=0.041  Sum_probs=62.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--Hhc-Ccccc--C-hhhhccCCCEEEEecCCchhhH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKL-NIASL--G-LEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~-gv~~~--~-l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .+|.||++.|||.|.++..=++.|..+|.+|.++.|..+.+..  ... .+++.  + .++.++.+++|+.++...+   
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~---   84 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA---   84 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH---
Confidence            5799999999999999999889999999999999998765432  122 23322  1 2456788999999886543   


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                        +|++.....+...+++|++
T Consensus        85 --~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         85 --VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             --HhHHHHHHHHHcCcEEEEC
Confidence              3444444444444556653

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=96.30  E-value=0.012  Score=59.08  Aligned_cols=110  Identities=14%  Similarity=0.055  Sum_probs=67.9

Q ss_pred             CEEEEEecChHHHHHHH---HH---hhCCCEEEEEcCCCCHHH-H--------HhcC----ccc-cChhhhccCCCEEEE
Q psy6348          99 KTLAVLGLGRIGREVAL---RM---QAFGMKVIGFDPMVSVED-A--------AKLN----IAS-LGLEDIWPLADYITV  158 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~---~l---~~~G~~V~~~d~~~~~~~-a--------~~~g----v~~-~~l~ell~~aDvV~l  158 (333)
                      .+|+|||.|.+|...+.   .+   ...|.+|..||+...... .        ...+    +.. .++.+.++.||+|+.
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~   80 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN   80 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence            37999999999998654   22   344679999998753211 1        1111    111 267899999999999


Q ss_pred             ecCCch------------------------hhHhhc--------cHHHHhcc---CCCcEEEEccCCcccchHhHHhhhh
Q psy6348         159 HTPLIP------------------------QTKNLI--------NAEVLKKC---KKGVRVVNVARGGIVDENALLDSLK  203 (333)
Q Consensus       159 ~~P~t~------------------------~t~~li--------~~~~~~~m---k~gailIN~aRg~~vd~~aL~~aL~  203 (333)
                      ++|...                        .-.+++        -.+..+.+   .|+++++|.+-.--+-..++.+...
T Consensus        81 ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv~i~t~~~~k~~~  160 (423)
T cd05297          81 TIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPMAELTWALNRYTP  160 (423)
T ss_pred             eeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChHHHHHHHHHHhCC
Confidence            998310                        000111        11223333   3699999998877777777766654


Q ss_pred             cCCceE
Q psy6348         204 CGHCGG  209 (333)
Q Consensus       204 ~g~i~g  209 (333)
                       -++.|
T Consensus       161 -~rviG  165 (423)
T cd05297         161 -IKTVG  165 (423)
T ss_pred             -CCEEE
Confidence             34433

linked to 3D####ucture

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.29  E-value=0.012  Score=50.02  Aligned_cols=85  Identities=25%  Similarity=0.378  Sum_probs=51.6

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK  180 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~  180 (333)
                      +-|+|.|.+++++++.++.+|++|.++|++..                .+..++-+. +.+    ...+.  +.+ .+.+
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~~-~~~----~~~~~--~~~-~~~~   56 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEVI-CIP----PDDIL--EDL-EIDP   56 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEEE-CSH----HHHHH--HHC--S-T
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCccE-ecC----hHHHH--hcc-CCCC
Confidence            46899999999999999999999999999632                122444422 222    11111  122 4667


Q ss_pred             CcEEEEccCCcccchHhHHhhhhcCCceEEE
Q psy6348         181 GVRVVNVARGGIVDENALLDSLKCGHCGGAA  211 (333)
Q Consensus       181 gailIN~aRg~~vd~~aL~~aL~~g~i~gaa  211 (333)
                      +..+| ++++.-.|.+.|..+|++ .....+
T Consensus        57 ~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG   85 (136)
T PF13478_consen   57 NTAVV-MTHDHELDAEALEAALAS-PARYIG   85 (136)
T ss_dssp             T-EEE---S-CCCHHHHHHHHTTS-S-SEEE
T ss_pred             CeEEE-EcCCchhHHHHHHHHHcC-CCCEEE
Confidence            77766 889999999999999887 343344

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=96.27  E-value=0.017  Score=55.28  Aligned_cols=89  Identities=19%  Similarity=0.239  Sum_probs=57.2

Q ss_pred             EEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHHHHhcCc----------cc--cChhhhccCCCEEEEecCCch--
Q psy6348         101 LAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVEDAAKLNI----------AS--LGLEDIWPLADYITVHTPLIP--  164 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~gv----------~~--~~l~ell~~aDvV~l~~P~t~--  164 (333)
                      |+|||.|.+|..+|..+...|  .++..+|...........+.          ..  .+-.+.+++||+|+++.....  
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~p~~~   80 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGAPRKP   80 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCCCCCC
Confidence            589999999999999998878  58999998764433322211          11  111468899999999986321  


Q ss_pred             -hhH--------hhcc--HHHHhccCCCcEEEEccC
Q psy6348         165 -QTK--------NLIN--AEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       165 -~t~--------~li~--~~~~~~mk~gailIN~aR  189 (333)
                       .++        .++.  .+.+....|++++|+.+-
T Consensus        81 ~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          81 GETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence             111        1111  112333457889999974

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.23  E-value=0.025  Score=53.89  Aligned_cols=86  Identities=14%  Similarity=0.255  Sum_probs=57.3

Q ss_pred             CEEEEEecChHHHHHHHHHh-hCCCEEEE-EcCCCC---HHHHHhcCccc-c-Chhhhcc--CCCEEEEecCCchhhHhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQ-AFGMKVIG-FDPMVS---VEDAAKLNIAS-L-GLEDIWP--LADYITVHTPLIPQTKNL  169 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~-~~G~~V~~-~d~~~~---~~~a~~~gv~~-~-~l~ell~--~aDvV~l~~P~t~~t~~l  169 (333)
                      .++||||.|+||+..+..+. .-++++.+ +|+.+.   .+.++++|+.. . +.++++.  +.|+|++++|...+.   
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~---   78 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHA---   78 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHH---
Confidence            37999999999998876665 34667665 566553   24567778753 2 6888875  589999999843322   


Q ss_pred             ccHHHHhccCCCcEEEEccC
Q psy6348         170 INAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aR  189 (333)
                        +.....++.|..+++-.-
T Consensus        79 --e~a~~al~aGk~VIdekP   96 (285)
T TIGR03215        79 --RHARLLAELGKIVIDLTP   96 (285)
T ss_pred             --HHHHHHHHcCCEEEECCc
Confidence              222333567777766543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PLN02342 ornithine carbamoyltransferase

Probab=96.22  E-value=0.085  Score=51.73  Aligned_cols=128  Identities=13%  Similarity=0.044  Sum_probs=82.4

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM  117 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l  117 (333)
                      +.+..-+|+|+|.-+....++-  +++=++.+.++                  .| .+.|+||++||= .++-.+++..+
T Consensus       156 ~la~~~~vPVINA~~~~~HPtQ--aLaDl~Ti~e~------------------~G-~l~glkva~vGD~~nva~Sli~~~  214 (348)
T PLN02342        156 DLAEYSSVPVINGLTDYNHPCQ--IMADALTIIEH------------------IG-RLEGTKVVYVGDGNNIVHSWLLLA  214 (348)
T ss_pred             HHHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCCEEEEECCCchhHHHHHHHH
Confidence            3456678999999665544443  33333333221                  12 378999999997 46778888888


Q ss_pred             hhCCCEEEEEcCCC---CHH---HHHhcC---ccc-cChhhhccCCCEEEEec---CCc-hh---h-----HhhccHHHH
Q psy6348         118 QAFGMKVIGFDPMV---SVE---DAAKLN---IAS-LGLEDIWPLADYITVHT---PLI-PQ---T-----KNLINAEVL  175 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~---~a~~~g---v~~-~~l~ell~~aDvV~l~~---P~t-~~---t-----~~li~~~~~  175 (333)
                      ..+|++|....|..   ..+   .+++.|   +.. .++++.+++||+|..-.   ... +.   .     .-.++++.+
T Consensus       215 ~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell  294 (348)
T PLN02342        215 AVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALM  294 (348)
T ss_pred             HHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHH
Confidence            89999999988754   111   123334   333 37899999999999753   111 10   0     123567777


Q ss_pred             hccCCCcEEEEc
Q psy6348         176 KKCKKGVRVVNV  187 (333)
Q Consensus       176 ~~mk~gailIN~  187 (333)
                      +.+|+++++..|
T Consensus       295 ~~ak~~aivMHp  306 (348)
T PLN02342        295 KLAGPQAYFMHC  306 (348)
T ss_pred             hccCCCcEEeCC
Confidence            777888877777

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.22  E-value=0.023  Score=54.59  Aligned_cols=86  Identities=16%  Similarity=0.277  Sum_probs=58.1

Q ss_pred             CCEEEEEecChHHHHHHHHHhh-CCCEEEE-EcCCCC---HHHHHhcCccc--cChhhhcc-----CCCEEEEecCCchh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA-FGMKVIG-FDPMVS---VEDAAKLNIAS--LGLEDIWP-----LADYITVHTPLIPQ  165 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~---~~~a~~~gv~~--~~l~ell~-----~aDvV~l~~P~t~~  165 (333)
                      ..++||||.|+||+..+..+.. -++++.+ +|+...   ...++++|+..  .+++++++     +.|+|+.++|...+
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H   83 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAH   83 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHH
Confidence            4589999999999997766654 4667654 566542   24567788764  36888884     58999999984222


Q ss_pred             hHhhccHHHHhccCCCcEEEEcc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~a  188 (333)
                         .  +......+.|..+|+-+
T Consensus        84 ---~--e~a~~a~eaGk~VID~s  101 (302)
T PRK08300         84 ---V--RHAAKLREAGIRAIDLT  101 (302)
T ss_pred             ---H--HHHHHHHHcCCeEEECC
Confidence               1  22223357788888875

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=96.21  E-value=0.019  Score=59.34  Aligned_cols=38  Identities=26%  Similarity=0.420  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..+.+|++.|+|.|.+|++++..|...|++|+++++..
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~  412 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTY  412 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            45789999999999999999999999999999999864

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.019  Score=58.26  Aligned_cols=112  Identities=17%  Similarity=0.108  Sum_probs=71.3

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH------HHHHhcCcccc--ChhhhccCCCEEEEec---C
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV------EDAAKLNIASL--GLEDIWPLADYITVHT---P  161 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~gv~~~--~l~ell~~aDvV~l~~---P  161 (333)
                      +..+.++++.|||.|.+|.++|..|+..|++|.++|.....      +..++.|++..  .-.+....+|+|++..   |
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~   90 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP   90 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence            34578999999999999999999999999999999965421      22345577653  1112456799999885   3


Q ss_pred             CchhhH-----h--hccHHHH--hccCC----CcEEEEccCCcccchHhHHhhhhc
Q psy6348         162 LIPQTK-----N--LINAEVL--KKCKK----GVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       162 ~t~~t~-----~--li~~~~~--~~mk~----gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      .++...     +  ++++-++  ..+.+    ..+-|--+.|+--...=+...|+.
T Consensus        91 ~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         91 DAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             CCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            333211     1  2233222  33422    234555566777766667777765

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=96.20  E-value=0.034  Score=54.41  Aligned_cols=107  Identities=16%  Similarity=0.072  Sum_probs=68.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--CCEEEE-EcCCCC--HHHHHhcCccc-cChhhhccCCCEEEEecCCc-hhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--GMKVIG-FDPMVS--VEDAAKLNIAS-LGLEDIWPLADYITVHTPLI-PQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t-~~t~~li~  171 (333)
                      .+|||||. .+|+..++.++..  +.++.+ +|+...  .+.++++|+.. .++++++.+.|++++++|.+ +...|.  
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~--   80 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGS--   80 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHH--
Confidence            68999999 6899999888765  477766 677652  34556678753 48999999999999999842 222221  


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +-..+.|+.|.-++-=-=-..-+.++|+++.++..+.
T Consensus        81 e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~  117 (343)
T TIGR01761        81 ALARALLARGIHVLQEHPLHPRDIQDLLRLAERQGRR  117 (343)
T ss_pred             HHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCE
Confidence            2223335555433322111144556677777776655

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.19  E-value=0.024  Score=54.56  Aligned_cols=87  Identities=21%  Similarity=0.230  Sum_probs=58.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Chhhhcc---CCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GLEDIWP---LADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l~ell~---~aDvV~l~~P~t~~  165 (333)
                      .|+++.|+|.|.+|...++.++..|. +|++.++.. ..+.++++|...+      +++++..   ..|+++-++... .
T Consensus       169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~-~  247 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHP-S  247 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCH-H
Confidence            58999999999999999999999999 688888765 3456677776432      1222221   257776665421 1


Q ss_pred             hHhhccHHHHhccCCCcEEEEcc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +   + ...++.++++..++.++
T Consensus       248 ~---~-~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        248 S---I-NTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             H---H-HHHHHHhhcCCEEEEEc
Confidence            1   1 34456667777777664

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=96.19  E-value=0.013  Score=58.00  Aligned_cols=98  Identities=16%  Similarity=0.208  Sum_probs=63.2

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCCCCHH-HHHhcC-------cc-ccChhh-hccCCCEEEEecCCch
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPMVSVE-DAAKLN-------IA-SLGLED-IWPLADYITVHTPLIP  164 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~-~a~~~g-------v~-~~~l~e-ll~~aDvV~l~~P~t~  164 (333)
                      ..++|+|+|. |.+|+.+.+.|... +++|..+.+..+.. ......       .. ..+++. .++++|+|++++|. .
T Consensus        37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~-~  115 (381)
T PLN02968         37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPH-G  115 (381)
T ss_pred             cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCH-H
Confidence            4569999999 99999999999876 77888876533211 111111       11 112332 25889999999984 3


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHh
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLD  200 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~  200 (333)
                      .     ..+....|+.|..+|+.+..-..+.++.++
T Consensus       116 ~-----s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~  146 (381)
T PLN02968        116 T-----TQEIIKALPKDLKIVDLSADFRLRDIAEYE  146 (381)
T ss_pred             H-----HHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence            2     334444456789999998766666554443

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=96.18  E-value=0.018  Score=56.24  Aligned_cols=92  Identities=14%  Similarity=0.184  Sum_probs=56.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC-CCEEEE-EcCCCCHHHH-HhcC-c------cccChhh-hccCCCEEEEecCCchhh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF-GMKVIG-FDPMVSVEDA-AKLN-I------ASLGLED-IWPLADYITVHTPLIPQT  166 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a-~~~g-v------~~~~l~e-ll~~aDvV~l~~P~t~~t  166 (333)
                      ++|+|+|. |.+|+.+++.+... ++++.+ +++....+.. ...+ +      .+.++++ ...++|+|++|+|... .
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~   81 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S   81 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence            58999997 99999999999876 677755 5533221111 1111 1      1223333 4578999999999532 2


Q ss_pred             HhhccHHHHhccCCCcEEEEccCCcccch
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARGGIVDE  195 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg~~vd~  195 (333)
                      ..+. .   ..++.|..+||.|-.--.+.
T Consensus        82 ~~~v-~---~a~~aG~~VID~S~~fR~~~  106 (343)
T PRK00436         82 MDLA-P---QLLEAGVKVIDLSADFRLKD  106 (343)
T ss_pred             HHHH-H---HHHhCCCEEEECCcccCCCC
Confidence            2221 1   22357899999975444433

>PRK04148 hypothetical protein; Provisional

Probab=96.18  E-value=0.016  Score=49.22  Aligned_cols=72  Identities=26%  Similarity=0.285  Sum_probs=53.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc------ChhhhccCCCEEEEecCCchhhHhh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL------GLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~------~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      +++++.+||+| -|..+|..|+..|.+|++.|.+.. .+.+++.++..+      .--++.+.+|+|--.-|-.+-...+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~   94 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFI   94 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHH
Confidence            46899999999 899999999999999999998763 344556665432      2346778899998888854433333

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.17  E-value=0.014  Score=58.58  Aligned_cols=110  Identities=15%  Similarity=0.165  Sum_probs=69.6

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH---HHHh--cCcccc--C-hhhhccCCCEEEEecCC---c
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE---DAAK--LNIASL--G-LEDIWPLADYITVHTPL---I  163 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~--~gv~~~--~-l~ell~~aDvV~l~~P~---t  163 (333)
                      ++.+|++.|+|.|.+|.++|+.|...|++|.++|.....+   ..++  .|+...  . .++.+.++|+|+..---   +
T Consensus         2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spgi~~~~   81 (445)
T PRK04308          2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPGISERQ   81 (445)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCCCCCCC
Confidence            3678999999999999999999999999999999765332   2222  265442  1 23445689999876322   2


Q ss_pred             hhhHh-------hccHH-HHhc-cC---CCcEEEEccCCcccchHhHHhhhhc
Q psy6348         164 PQTKN-------LINAE-VLKK-CK---KGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       164 ~~t~~-------li~~~-~~~~-mk---~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      +..+.       ++.+. .+.. ++   ...+-|--+.|+--...-+...|+.
T Consensus        82 p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~  134 (445)
T PRK04308         82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK  134 (445)
T ss_pred             HHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            22221       22222 3223 32   2345555566777777777777765

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=96.15  E-value=0.026  Score=54.32  Aligned_cols=139  Identities=16%  Similarity=0.130  Sum_probs=87.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-------------ChhhhccCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-------------GLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-------------~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ++|.|+|.|.||+-++.+|...|..|..+.+....+..++.|....             .-.+.+..+|+|++++- +-+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK-a~q   79 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK-AYQ   79 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec-ccc
Confidence            4899999999999999999999987887776554455555554221             22355678999999985 334


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC--CCCCCCccchhhcCCCcEEEccCCCCC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC--EEPPKSEQTFELIKHPKVIVTPHLGAS  243 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~--~EP~~~~~~~~L~~~pnvi~TPHi~~~  243 (333)
                      +...+ +.....+++.+.++-. .-++=.++.+.+.....++- .++..+.  .+.+..   -....+..+.+.+.-+..
T Consensus        80 ~~~al-~~l~~~~~~~t~vl~l-qNG~g~~e~l~~~~~~~~il-~G~~~~~a~~~~~g~---v~~~g~g~~~ig~~~~~~  153 (307)
T COG1893          80 LEEAL-PSLAPLLGPNTVVLFL-QNGLGHEEELRKILPKETVL-GGVTTHGAVREGPGH---VVHTGLGDTVIGELRGGR  153 (307)
T ss_pred             HHHHH-HHhhhcCCCCcEEEEE-eCCCcHHHHHHHhCCcceEE-EEEeeeeeEecCCce---EEEecCCcEEEccCCCCc
Confidence            44444 5566777888766644 34455555666666666444 2333322  222111   123345677777777755


Q ss_pred             c
Q psy6348         244 T  244 (333)
Q Consensus       244 t  244 (333)
                      .
T Consensus       154 ~  154 (307)
T COG1893         154 D  154 (307)
T ss_pred             h
Confidence            4

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=96.13  E-value=0.016  Score=55.35  Aligned_cols=39  Identities=23%  Similarity=0.391  Sum_probs=34.4

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      +..+.||++.|+|.|..+++++..|...|. +|.+++|+.
T Consensus       119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~  158 (288)
T PRK12749        119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD  158 (288)
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            346789999999999999999998888887 899999975

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=96.13  E-value=0.024  Score=52.17  Aligned_cols=90  Identities=13%  Similarity=0.054  Sum_probs=61.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH---HhcCcccc--Ch-hhhccCCCEEEEecCCchhh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA---AKLNIASL--GL-EDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a---~~~gv~~~--~l-~ell~~aDvV~l~~P~t~~t  166 (333)
                      ..++.|+++.|||.|.++..=++.|..+|.+|.++.|..+++..   ....+++.  ++ .+.+..+++|+.++...+  
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~--   97 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK--   97 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH--
Confidence            45677999999999999999889999999999999998865432   11123322  21 244678999999876332  


Q ss_pred             HhhccHHHHhccCCCcEEEEc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~  187 (333)
                         +++...+..+.-.+++|+
T Consensus        98 ---vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         98 ---LNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             ---HHHHHHHHHHHcCCeEEE
Confidence               444444445544456665

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=96.09  E-value=0.022  Score=55.67  Aligned_cols=82  Identities=23%  Similarity=0.254  Sum_probs=57.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC---------------------CHH-----HHHhcC--cc--
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV---------------------SVE-----DAAKLN--IA--  142 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---------------------~~~-----~a~~~g--v~--  142 (333)
                      ..|..++|.|||+|.+|..+|..|...|. ++..+|...                     .+.     ..++..  +.  
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~   99 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVE   99 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEE
Confidence            46889999999999999999999999999 898888752                     110     111111  11  


Q ss_pred             c-------cChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348         143 S-------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus       143 ~-------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      .       .+++++++++|+|+.++- +.+++.++++-..+
T Consensus       100 ~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~  139 (339)
T PRK07688        100 AIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQK  139 (339)
T ss_pred             EEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHH
Confidence            1       134577888998888764 56777777766554

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=96.09  E-value=0.022  Score=54.58  Aligned_cols=67  Identities=22%  Similarity=0.263  Sum_probs=49.1

Q ss_pred             CEEEEEecChHHH-HHHHHHhhCC--CE-EEEEcCCCC--HHHHHhcCcc--ccChhhhccC--CCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGR-EVALRMQAFG--MK-VIGFDPMVS--VEDAAKLNIA--SLGLEDIWPL--ADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~-~vA~~l~~~G--~~-V~~~d~~~~--~~~a~~~gv~--~~~l~ell~~--aDvV~l~~P~t~~  165 (333)
                      .++||||+|.+++ ..+..++..+  ++ |.++|+...  .+.++++++.  +.+++++++.  .|+|++++|....
T Consensus         4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H   80 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALH   80 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhh
Confidence            5899999997765 5788888776  34 445688763  3455777874  4489999986  5999999995443

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.07  E-value=0.018  Score=56.15  Aligned_cols=108  Identities=22%  Similarity=0.247  Sum_probs=65.1

Q ss_pred             EEEEEecChHHHHHHHHHhhC----------CCEEEE-EcCCC--------CHHHH----HhcCc-c-------ccChhh
Q psy6348         100 TLAVLGLGRIGREVALRMQAF----------GMKVIG-FDPMV--------SVEDA----AKLNI-A-------SLGLED  148 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~----------G~~V~~-~d~~~--------~~~~a----~~~gv-~-------~~~l~e  148 (333)
                      +|||+|+|.||+.+++.+...          +++|.+ +|+..        ..+.+    ...+. .       ..++++
T Consensus         4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e   83 (341)
T PRK06270          4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE   83 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence            799999999999999988654          567655 45421        22221    12221 1       126788


Q ss_pred             hc--cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcc-cchHhHHhhhhcCCc
Q psy6348         149 IW--PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI-VDENALLDSLKCGHC  207 (333)
Q Consensus       149 ll--~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~-vd~~aL~~aL~~g~i  207 (333)
                      ++  .+.|+|+.++|....+...--.-....|+.|.-+|-...+.+ ...++|.++.++..+
T Consensus        84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            87  468999999996544322212223455677777776543332 235677777766555

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=96.04  E-value=0.03  Score=52.73  Aligned_cols=63  Identities=25%  Similarity=0.341  Sum_probs=43.7

Q ss_pred             CEEEEEe-cChHHHHHHHHHhh-CCCEEEE-EcCCCCH----HHHHh-----cCccc-cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLG-LGRIGREVALRMQA-FGMKVIG-FDPMVSV----EDAAK-----LNIAS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~~----~~a~~-----~gv~~-~~l~ell~~aDvV~l~~P  161 (333)
                      .+|+|+| +|+||+.+++.+.. -++++.+ +|+..+.    .....     .|+.. .+++++...+|+|+.++|
T Consensus         2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~   77 (266)
T TIGR00036         2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTT   77 (266)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCC
Confidence            3899999 69999999998875 6888766 6743211    11111     24443 368888667999999986

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.99  E-value=0.022  Score=52.98  Aligned_cols=91  Identities=24%  Similarity=0.242  Sum_probs=60.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHH-----------------------HHHhc--Cccc---
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVE-----------------------DAAKL--NIAS---  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~-----------------------~a~~~--gv~~---  143 (333)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|... +..                       ..++.  .++.   
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~lnp~v~i~~~  107 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARINPHIAIETI  107 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHCCCCEEEEE
Confidence            46899999999999999999999999997 677777543 110                       00111  1110   


Q ss_pred             ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                         .   +.+++++++|+|+.++ .+.+++..+++-..+.-   .-+|..+
T Consensus       108 ~~~i~~~~~~~~~~~~DiVi~~~-D~~~~r~~ln~~~~~~~---ip~v~~~  154 (245)
T PRK05690        108 NARLDDDELAALIAGHDLVLDCT-DNVATRNQLNRACFAAK---KPLVSGA  154 (245)
T ss_pred             eccCCHHHHHHHHhcCCEEEecC-CCHHHHHHHHHHHHHhC---CEEEEee
Confidence               1   2356788999988887 46677777776655443   3466643

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=95.93  E-value=0.12  Score=51.43  Aligned_cols=65  Identities=25%  Similarity=0.216  Sum_probs=49.2

Q ss_pred             ccCCCEEEEEec-----C---hHHHHHHHHHhhCCCEEEEEcCCC---CHH---H----HHhcCc--cc-cChhhhccCC
Q psy6348          95 ELYGKTLAVLGL-----G---RIGREVALRMQAFGMKVIGFDPMV---SVE---D----AAKLNI--AS-LGLEDIWPLA  153 (333)
Q Consensus        95 ~l~gktvGIIGl-----G---~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~----a~~~gv--~~-~~l~ell~~a  153 (333)
                      .+.|+||+|+|-     |   ++.++++..+..+|++|....|..   .++   .    +++.|.  +. .++++.+++|
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a  263 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA  263 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence            378999999985     5   677899999999999999998863   122   1    233453  32 3899999999


Q ss_pred             CEEEEe
Q psy6348         154 DYITVH  159 (333)
Q Consensus       154 DvV~l~  159 (333)
                      |+|..-
T Consensus       264 DvVYtd  269 (395)
T PRK07200        264 DIVYPK  269 (395)
T ss_pred             CEEEEc
Confidence            999876

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=95.91  E-value=0.072  Score=51.45  Aligned_cols=102  Identities=19%  Similarity=0.239  Sum_probs=69.1

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCcc-ccCCCEEEEEec-ChHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGT-ELYGKTLAVLGL-GRIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~-~l~gktvGIIGl-G~IG~~vA~~  116 (333)
                      +.+..-.|+|+|.-++...++-  +++=++.+.++                  .|. .+.|+||++||- +++..+++..
T Consensus       113 ~~a~~~~vPVINag~~~~HPtQ--aL~Dl~Ti~e~------------------~g~~~l~g~~va~vGd~~rv~~Sl~~~  172 (311)
T PRK14804        113 VMKNGSQVPVINGCDNMFHPCQ--SLADIMTIALD------------------SPEIPLNQKQLTYIGVHNNVVNSLIGI  172 (311)
T ss_pred             HHHHHCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------hCCCCCCCCEEEEECCCCcHHHHHHHH
Confidence            3455578999999766555543  22223333221                  132 478999999998 7999999999


Q ss_pred             HhhCCCEEEEEcCCCCH-H-------HHHhcC-ccc-cChhhhccCCCEEEEec
Q psy6348         117 MQAFGMKVIGFDPMVSV-E-------DAAKLN-IAS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus       117 l~~~G~~V~~~d~~~~~-~-------~a~~~g-v~~-~~l~ell~~aDvV~l~~  160 (333)
                      +..+|++|....|..-. +       .+++.| +.. .++++.++++|+|..-+
T Consensus       173 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~  226 (311)
T PRK14804        173 TAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT  226 (311)
T ss_pred             HHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence            99999999999885421 1       122233 333 37999999999999843

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=95.88  E-value=0.13  Score=50.15  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=65.8

Q ss_pred             hHhhCCcEEEECCCC-CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHH
Q psy6348          40 AATRKGVLVLNAPGG-NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVAL  115 (333)
Q Consensus        40 aa~~~gI~V~n~p~~-n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~  115 (333)
                      .+....|+|+|.-.+ +..++-  +++=++.+..++.               ..|..+.|+||++||=   +++..+++.
T Consensus       117 ~a~~~~vPVINa~~g~~~HPtQ--aLaDl~Ti~e~~~---------------~~g~~l~g~kia~vGD~~~~rv~~Sl~~  179 (338)
T PRK08192        117 FAEGSRVPVINGGDGSNEHPTQ--ALLDLFTIQKELA---------------HAGRGIDGMHIAMVGDLKFGRTVHSLSR  179 (338)
T ss_pred             HHHhCCCCEEECCCCCCCCcHH--HHHHHHHHHHHhh---------------ccCCCcCCCEEEEECcCCCCchHHHHHH
Confidence            345578999998653 545543  2333333322110               0133588999999998   588888887


Q ss_pred             HHh-hCCCEEEEEcCCC---CHH---HHHhcCc--cc-cChhhhccCCCEEEEe
Q psy6348         116 RMQ-AFGMKVIGFDPMV---SVE---DAAKLNI--AS-LGLEDIWPLADYITVH  159 (333)
Q Consensus       116 ~l~-~~G~~V~~~d~~~---~~~---~a~~~gv--~~-~~l~ell~~aDvV~l~  159 (333)
                      .+. -+|++|....|..   +.+   .+++.|.  +. .++++.+++||+|..-
T Consensus       180 ~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~  233 (338)
T PRK08192        180 LLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT  233 (338)
T ss_pred             HHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence            765 4599999888753   222   2233443  32 3789999999999884

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.88  E-value=0.026  Score=62.47  Aligned_cols=66  Identities=18%  Similarity=0.194  Sum_probs=46.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhC-CCE-------------EEEEcCCCCHH--HHHhc-Cc---cc--cC---hhhhcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAF-GMK-------------VIGFDPMVSVE--DAAKL-NI---AS--LG---LEDIWP  151 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~-G~~-------------V~~~d~~~~~~--~a~~~-gv---~~--~~---l~ell~  151 (333)
                      ..|+|+|||.|+||+.+|+.|... +.+             |.+.|++....  .++.. ++   ..  .+   +.++++
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~  647 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS  647 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence            467999999999999999999753 333             88889876332  22222 42   22  13   344457


Q ss_pred             CCCEEEEecCC
Q psy6348         152 LADYITVHTPL  162 (333)
Q Consensus       152 ~aDvV~l~~P~  162 (333)
                      ++|+|++++|.
T Consensus       648 ~~DaVIsalP~  658 (1042)
T PLN02819        648 QVDVVISLLPA  658 (1042)
T ss_pred             CCCEEEECCCc
Confidence            89999999995

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.85  E-value=0.02  Score=57.55  Aligned_cols=107  Identities=16%  Similarity=0.160  Sum_probs=66.9

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHh--cCcccc---ChhhhccCCCEEEEec--C-Cchhh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---EDAAK--LNIASL---GLEDIWPLADYITVHT--P-LIPQT  166 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~--~gv~~~---~l~ell~~aDvV~l~~--P-~t~~t  166 (333)
                      .-++.|+|+|.+|.++|+.|+..|++|.++|.....   +..++  .|+...   .-.+.+.++|+|+..-  | .++..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~   85 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPAL   85 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHH
Confidence            348999999999999999999999999999976532   22223  366542   1234567899887652  2 22221


Q ss_pred             H-------hhccHH-HH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         167 K-------NLINAE-VL-KKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       167 ~-------~li~~~-~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      .       .++++- .+ ..++...+-|--+.|+--...-+...|+.
T Consensus        86 ~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         86 RAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             HHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            1       123332 23 23343345555566777777777777764

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.84  E-value=0.02  Score=58.10  Aligned_cols=108  Identities=18%  Similarity=0.148  Sum_probs=67.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC--HH---HHHhcCcccc---ChhhhccCCCEEEEec--CC-ch
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--VE---DAAKLNIASL---GLEDIWPLADYITVHT--PL-IP  164 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~---~a~~~gv~~~---~l~ell~~aDvV~l~~--P~-t~  164 (333)
                      +.||+++|+|+|.-|.+.|+.|+..|++|+++|....  ..   ..++ +....   ..++.+.++|+|+..-  |. ++
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~vV~SpgI~~~~p   84 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLAAFDVVVKSPGISPYRP   84 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHccCCCEEEECCCCCCCCH
Confidence            4689999999999999999999999999999996432  11   1222 32221   2235567899988753  32 22


Q ss_pred             hhH-------hhccHHHH--hc-cC-----CCcEEEEccCCcccchHhHHhhhhc
Q psy6348         165 QTK-------NLINAEVL--KK-CK-----KGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       165 ~t~-------~li~~~~~--~~-mk-----~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ..+       .++++-++  .. ++     ...+-|--+.|+--...-+...|+.
T Consensus        85 ~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         85 EALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             HHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            111       13444443  32 32     1345555566777777767777764

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.83  E-value=0.034  Score=52.97  Aligned_cols=69  Identities=25%  Similarity=0.382  Sum_probs=49.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcC-----ccccChhhh--ccCCCEEEEecCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLN-----IASLGLEDI--WPLADYITVHTPL  162 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g-----v~~~~l~el--l~~aDvV~l~~P~  162 (333)
                      ....|+++.|+|.|-.+++++..|+..|. +|++++|+.+.  +.++..+     +....+.++  ..++|+|+.++|.
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~  200 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPV  200 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCC
Confidence            45678999999999999999999999995 79999997633  2222222     112223222  2268999999984

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=95.80  E-value=0.018  Score=49.96  Aligned_cols=63  Identities=19%  Similarity=0.235  Sum_probs=48.0

Q ss_pred             EEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc--------ChhhhccCCCEEEEecCCch
Q psy6348         101 LAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL--------GLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus       101 vGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~--------~l~ell~~aDvV~l~~P~t~  164 (333)
                      |.|+|. |.+|+.+++.|...|++|+++.|..+.... ..+++.+        ++.+.++.+|+|+.+++.+.
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~   72 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP   72 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence            578995 999999999999999999999987643222 3444322        35677889999999997433

...

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.79  E-value=0.021  Score=53.80  Aligned_cols=100  Identities=18%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             CccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH---HH----HHhcCccc-cChhhhccCCCEEEEecCC
Q psy6348          92 TGTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV---ED----AAKLNIAS-LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~---~~----a~~~gv~~-~~l~ell~~aDvV~l~~P~  162 (333)
                      .|.++...|++|+|+ |.||..+|+.+...+.+....-|....   ..    -+++|-.. .+++..+.+.|+++.... 
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs-  239 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS-  239 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee-
Confidence            588999999999999 999999999999888766555443211   11    12223332 367766666665554432 


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccCCcccchH
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDEN  196 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~  196 (333)
                       ..+-..|+.+.   +|||+.+++-++..-+|+.
T Consensus       240 -~~~g~~I~pq~---lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         240 -MPKGVEIFPQH---LKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             -cCCCceechhh---ccCCeEEEcCCcCcccccc
Confidence             23345565554   6999999999888766654

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.78  E-value=0.11  Score=47.02  Aligned_cols=91  Identities=29%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-c-----Chhhh-----ccCCCEEEEecCCc
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-L-----GLEDI-----WPLADYITVHTPLI  163 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~-----~l~el-----l~~aDvV~l~~P~t  163 (333)
                      ..|+++.|.|.|.+|+.+++.++..|.+|++.++.. ..+.+++.|... .     +..+.     -...|+++.+++..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            357899999999999999999999999999998864 223344444321 1     11111     24578887776531


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      .     .-...+..|+++..+++++...
T Consensus       213 ~-----~~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         213 E-----TLAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             H-----HHHHHHHhcccCCEEEEEccCC
Confidence            1     1244556677777777776543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.76  E-value=0.047  Score=49.71  Aligned_cols=82  Identities=18%  Similarity=0.297  Sum_probs=55.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C-----------------H-HH----HHhc--Cccc----
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S-----------------V-ED----AAKL--NIAS----  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~-----------------~-~~----a~~~--gv~~----  143 (333)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|... +                 + +.    .++.  .++.    
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~lnp~v~v~~~~  103 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEINPFVEIEAHN  103 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHCCCCEEEEEe
Confidence            45889999999999999999999999998 488888652 1                 0 00    0111  1111    


Q ss_pred             --c---ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348         144 --L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus       144 --~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                        .   +++++++++|+|+.|+- +.+++..++....+
T Consensus       104 ~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~  140 (212)
T PRK08644        104 EKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLE  140 (212)
T ss_pred             eecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHH
Confidence              1   23467888999888864 55666666655444

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.70  E-value=0.033  Score=55.80  Aligned_cols=109  Identities=17%  Similarity=0.201  Sum_probs=66.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH--HHhcCcccc---ChhhhccCCCEEEEecCCchhhHh-
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED--AAKLNIASL---GLEDIWPLADYITVHTPLIPQTKN-  168 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~~-  168 (333)
                      ++.++++.|+|+|..|.+.++.|+..|++|.++|.......  ..+.|+...   ...+.++..|+|+. -|.-+.... 
T Consensus         3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~-spgi~~~~~~   81 (438)
T PRK03806          3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVA-SPGIALAHPS   81 (438)
T ss_pred             ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEE-CCCCCCCCHH
Confidence            35688999999999999999999999999999997653321  112265442   12245677886655 442221111 


Q ss_pred             ----------hccH-HHHhc-cCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         169 ----------LINA-EVLKK-CKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       169 ----------li~~-~~~~~-mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                                ++.+ +.+.. ++...+-|--+.|+--...-|...|+.
T Consensus        82 ~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         82 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             HHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence                      2222 23333 232344455556777777777777764

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.67  E-value=0.059  Score=51.82  Aligned_cols=88  Identities=19%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Ch-hhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GL-EDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l-~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      .|.++.|.|.|.+|...++.++..|.+|++.++.. ..+.++++|+..+ +. ++.-...|+++.+.... .    .-..
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~----~~~~  239 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G----LVPP  239 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H----HHHH
Confidence            48899999999999999999999999999988765 4466788887543 21 11123467777665431 1    1245


Q ss_pred             HHhccCCCcEEEEccC
Q psy6348         174 VLKKCKKGVRVVNVAR  189 (333)
Q Consensus       174 ~~~~mk~gailIN~aR  189 (333)
                      .++.++++..++.++.
T Consensus       240 ~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       240 ALEALDRGGVLAVAGI  255 (329)
T ss_pred             HHHhhCCCcEEEEEec
Confidence            6677888888887753

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.66  E-value=0.032  Score=51.85  Aligned_cols=90  Identities=22%  Similarity=0.288  Sum_probs=60.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------H----HHHhc--Ccc--c-
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------E----DAAKL--NIA--S-  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~----~a~~~--gv~--~-  143 (333)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.. ..                   +    ..++.  .++  . 
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~inp~v~i~~~   99 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQINPHIAINPI   99 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHHCCCcEEEEE
Confidence            45889999999999999999999999887 677777543 11                   0    00111  111  1 


Q ss_pred             ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                         .   +++++++++|+|+.++ .+.+++..+++...+.   +.-+|..
T Consensus       100 ~~~i~~~~~~~~~~~~DlVvd~~-D~~~~r~~ln~~~~~~---~ip~v~~  145 (240)
T TIGR02355       100 NAKLDDAELAALIAEHDIVVDCT-DNVEVRNQLNRQCFAA---KVPLVSG  145 (240)
T ss_pred             eccCCHHHHHHHhhcCCEEEEcC-CCHHHHHHHHHHHHHc---CCCEEEE
Confidence               1   2456788999888887 4677888887666543   3335543

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.64  E-value=0.053  Score=54.24  Aligned_cols=88  Identities=22%  Similarity=0.113  Sum_probs=56.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--Ccccc--------Ch-hhhccCCCEEEEecCCc
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--NIASL--------GL-EDIWPLADYITVHTPLI  163 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--gv~~~--------~l-~ell~~aDvV~l~~P~t  163 (333)
                      +..+++.|+|+|.+|+.+++.|.+.|.+|+++|..+.. +...+.  ++...        .| +.-+.++|.|+++++..
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~  308 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDD  308 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCc
Confidence            34689999999999999999999999999999886532 222222  33221        12 22357899999888754


Q ss_pred             hhhHhhccHHHHhccCCCcEEE
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVV  185 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailI  185 (333)
                      .  .+++-......+.+..+++
T Consensus       309 ~--~n~~~~~~~~~~~~~~ii~  328 (453)
T PRK09496        309 E--ANILSSLLAKRLGAKKVIA  328 (453)
T ss_pred             H--HHHHHHHHHHHhCCCeEEE
Confidence            3  3333333333344433333

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.55  E-value=0.052  Score=50.76  Aligned_cols=46  Identities=28%  Similarity=0.366  Sum_probs=37.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|+++.|+|.|.+|...++.++.+|.+ |++.++.. ..+.++++|+.
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~  167 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT  167 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence            688999999999999999999999996 88887654 33455666653

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=95.52  E-value=0.035  Score=57.97  Aligned_cols=68  Identities=22%  Similarity=0.325  Sum_probs=49.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcCc--cccC---hhhhccCCCEEEEecCC
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLNI--ASLG---LEDIWPLADYITVHTPL  162 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~gv--~~~~---l~ell~~aDvV~l~~P~  162 (333)
                      ....|||||||-|..|+.+++.++.+|++|+++|+.......  .+.-+  .+.+   +.++.+++|+|+.....
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~   93 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEH   93 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCC
Confidence            467899999999999999999999999999999987632111  11111  1223   55667889999876543

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=95.49  E-value=0.018  Score=45.57  Aligned_cols=86  Identities=16%  Similarity=0.250  Sum_probs=49.8

Q ss_pred             CEEEEEecChHHHHHHHHH-hhCCCEE-EEEcCCCCHHHHHhcCcccc-ChhhhccC--CCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGLGRIGREVALRM-QAFGMKV-IGFDPMVSVEDAAKLNIASL-GLEDIWPL--ADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l-~~~G~~V-~~~d~~~~~~~a~~~gv~~~-~l~ell~~--aDvV~l~~P~t~~t~~li~~~  173 (333)
                      .++.|+|+|+.|++++... ...|+++ .++|..+..--..-.|+... +++++.+.  .|+-++++|. +.....+.+-
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~~i~gipV~~~~~~l~~~~~i~iaii~VP~-~~a~~~~~~~   82 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGKEIGGIPVYGSMDELEEFIEIDIAIITVPA-EAAQEVADEL   82 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTSEETTEEEESSHHHHHHHCTTSEEEEES-H-HHHHHHHHHH
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCcEECCEEeeccHHHhhhhhCCCEEEEEcCH-HHHHHHHHHH
Confidence            4799999999999987433 3456543 34554432211122356655 67776665  9999999993 4444444333


Q ss_pred             HHhccCCCcEEEEcc
Q psy6348         174 VLKKCKKGVRVVNVA  188 (333)
Q Consensus       174 ~~~~mk~gailIN~a  188 (333)
                      .-+.+|   .++|++
T Consensus        83 ~~~gIk---~i~nft   94 (96)
T PF02629_consen   83 VEAGIK---GIVNFT   94 (96)
T ss_dssp             HHTT-S---EEEEES
T ss_pred             HHcCCC---EEEEeC
Confidence            323333   456654

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.43  E-value=0.089  Score=50.16  Aligned_cols=104  Identities=14%  Similarity=0.095  Sum_probs=70.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccCh-hhhccCCCEEEEecCCchhhH---------
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGL-EDIWPLADYITVHTPLIPQTK---------  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l-~ell~~aDvV~l~~P~t~~t~---------  167 (333)
                      |++++|||--.=-..+++.|...|++|..|.-.......  .|+...++ ++.++++|+|++-+|.+....         
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~   78 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE   78 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence            689999998887788999999999998887642111111  15555554 445899999999999665421         


Q ss_pred             -hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         168 -NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       168 -~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                       -.++++.++.|+++++ +-++    ++..++.++.++..+.
T Consensus        79 ~~~l~~~~l~~~~~~~~-~~~G----~~~~~l~~~a~~~gi~  115 (287)
T TIGR02853        79 KVVLTPELLESTKGHCT-IYVG----ISNPYLEQLAADAGVK  115 (287)
T ss_pred             CccccHHHHHhcCCCCE-EEEe----cCCHHHHHHHHHCCCe
Confidence             1246788999997654 3333    3445555566666664

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.43  E-value=0.19  Score=49.10  Aligned_cols=100  Identities=18%  Similarity=0.106  Sum_probs=67.0

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCcccc-CCCEEEEEecC-------hHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTEL-YGKTLAVLGLG-------RIG  110 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l-~gktvGIIGlG-------~IG  110 (333)
                      +.+...+|+|+|.... ..++-  +++=++.+.++                  .| .+ .|+||+|++.|       ++.
T Consensus       131 ~~a~~s~vPVINa~~~-~HPtQ--aLaDl~Ti~e~------------------~g-~~~~g~ki~i~~~gd~~~~~~~v~  188 (335)
T PRK04523        131 SFAKYSTVPVINMETI-THPCQ--ELAHALALQEH------------------FG-TTLRGKKYVLTWTYHPKPLNTAVA  188 (335)
T ss_pred             HHHHhCCCCEEECCCC-CChHH--HHHHHHHHHHH------------------hC-CccCCCEEEEEEeccCcccccHHH
Confidence            3455678999999766 55543  33334443332                  12 25 68999887643       788


Q ss_pred             HHHHHHHhhCCCEEEEEcC-C---CCHHH-------HHhcCc--cc-cChhhhccCCCEEEEec
Q psy6348         111 REVALRMQAFGMKVIGFDP-M---VSVED-------AAKLNI--AS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus       111 ~~vA~~l~~~G~~V~~~d~-~---~~~~~-------a~~~gv--~~-~~l~ell~~aDvV~l~~  160 (333)
                      .+++..+..+|++|....| .   +..+.       +++.|.  .. .++++.++++|+|..-.
T Consensus       189 ~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~  252 (335)
T PRK04523        189 NSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGADVVYAKS  252 (335)
T ss_pred             HHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEece
Confidence            8999999999999999998 2   23221       233453  32 37899999999998744

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=95.42  E-value=0.026  Score=55.54  Aligned_cols=81  Identities=23%  Similarity=0.289  Sum_probs=50.3

Q ss_pred             EEEEecChHHHHHHHHHhhCC-C-EEEEEcCCCCH-HHHHh--c--Cccc--------cChhhhccCCCEEEEecCCchh
Q psy6348         101 LAVLGLGRIGREVALRMQAFG-M-KVIGFDPMVSV-EDAAK--L--NIAS--------LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G-~-~V~~~d~~~~~-~~a~~--~--gv~~--------~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      |+|+|.|.+|+.+++.|...+ . +|++.|++... +...+  .  .++.        .+++++++++|+|+.|+|..  
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~--   78 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF--   78 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG--
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc--
Confidence            689999999999999998765 4 89999997633 22211  1  2221        13678899999999999843  


Q ss_pred             hHhhccHHH-HhccCCCcEEEEc
Q psy6348         166 TKNLINAEV-LKKCKKGVRVVNV  187 (333)
Q Consensus       166 t~~li~~~~-~~~mk~gailIN~  187 (333)
                          .+... -..++.|.-.||+
T Consensus        79 ----~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   79 ----FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             ----GHHHHHHHHHHHT-EEEES
T ss_pred             ----hhHHHHHHHHHhCCCeecc
Confidence                11121 1224556667773

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=95.41  E-value=0.023  Score=48.92  Aligned_cols=93  Identities=17%  Similarity=0.249  Sum_probs=60.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc---H
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN---A  172 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~---~  172 (333)
                      ..|++|++||+=   ++++++++..+.++.++|..+........++.....++++++||+|++.-.      -++|   .
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGs------TlvN~Ti~   79 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGS------TLVNGTID   79 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECH------HCCTTTHH
T ss_pred             cCCCEEEEEcCc---HHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEee------eeecCCHH
Confidence            468999999961   247888888899999999976332222223333467899999999998642      2232   5


Q ss_pred             HHHhccCCCcEEEEccCCcccchHh
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENA  197 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~a  197 (333)
                      +.+++.+++..++=.+-....-.+.
T Consensus        80 ~iL~~~~~~~~vil~GpS~~~~P~~  104 (147)
T PF04016_consen   80 DILELARNAREVILYGPSAPLHPEA  104 (147)
T ss_dssp             HHHHHTTTSSEEEEESCCGGS-GGG
T ss_pred             HHHHhCccCCeEEEEecCchhhHHH
Confidence            5777788788888776655444433

; PDB: 3L5O_B 3NPG_A.

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.34  E-value=0.044  Score=52.61  Aligned_cols=86  Identities=26%  Similarity=0.299  Sum_probs=57.7

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC------------CHHH----------H----Hhc--Cccc--c----
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV------------SVED----------A----AKL--NIAS--L----  144 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~------------~~~~----------a----~~~--gv~~--~----  144 (333)
                      +|.|||.|.+|..+|+.|...|. ++..+|...            ..+.          +    ++.  +++.  .    
T Consensus         1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I   80 (307)
T cd01486           1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI   80 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence            58999999999999999999998 577766321            0000          0    111  1111  0    


Q ss_pred             --------------------ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         145 --------------------GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       145 --------------------~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                                          .++++++++|+|+.++ ++-++|.+++.--...   +..+|+.+.
T Consensus        81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~t-Dn~esR~L~~~~~~~~---~k~~I~aal  141 (307)
T cd01486          81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLT-DSRESRWLPTLLSAAK---NKLVINAAL  141 (307)
T ss_pred             cccccccccccccccccCHHHHHHHHhhCCEEEECC-CCHHHHHHHHHHHHHh---CCcEEEEEe
Confidence                                2468899999999998 5778888887665543   336777654

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.32  E-value=0.1  Score=52.18  Aligned_cols=107  Identities=20%  Similarity=0.167  Sum_probs=68.1

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HH----HH-hcCcccc--ChhhhccCCCEEEEec--C-CchhhH
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--ED----AA-KLNIASL--GLEDIWPLADYITVHT--P-LIPQTK  167 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~----a~-~~gv~~~--~l~ell~~aDvV~l~~--P-~t~~t~  167 (333)
                      ++.|||+|.+|.++|+.|+..|++|.++|.....  ..    .+ ..|++..  .-.+.+.++|+|+..-  | .+++..
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~   80 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQ   80 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHH
Confidence            4789999999999999999999999999975532  11    12 2466543  1245567899887753  2 223221


Q ss_pred             -------hhccHHH-H-hccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         168 -------NLINAEV-L-KKCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       168 -------~li~~~~-~-~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                             .++.+.+ + ..++...+-|.-+.|+--...-+...|+...
T Consensus        81 ~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        81 AAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             HHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence                   1233332 2 3344345556667788777777777777543

>KOG2711|consensus

Probab=95.31  E-value=0.03  Score=54.29  Aligned_cols=164  Identities=20%  Similarity=0.163  Sum_probs=95.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhh-------CCCEE--EEEcCCCCH--HHHH------hc------Ccc-------cc
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQA-------FGMKV--IGFDPMVSV--EDAA------KL------NIA-------SL  144 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~-------~G~~V--~~~d~~~~~--~~a~------~~------gv~-------~~  144 (333)
                      +..-++|+|||.|++|+.+|+.+..       |.-+|  +.|+-....  +...      +.      |++       ..
T Consensus        18 ~~~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~   97 (372)
T KOG2711|consen   18 ERDPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVP   97 (372)
T ss_pred             hcCceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecc
Confidence            3455799999999999999988753       22333  444433211  1110      11      111       12


Q ss_pred             ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchH---------hHHhhhhc--CCceEE--E
Q psy6348         145 GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDEN---------ALLDSLKC--GHCGGA--A  211 (333)
Q Consensus       145 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~---------aL~~aL~~--g~i~ga--a  211 (333)
                      ++.+++.+||+++..+|- .-+.. +-+++..+.|+++..|.+..|=-+.++         -+-++|.-  +-+.|+  |
T Consensus        98 dl~ea~~dADilvf~vPh-Qf~~~-ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~vL~GaNiA  175 (372)
T KOG2711|consen   98 DLVEAAKDADILVFVVPH-QFIPR-ICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSVLMGANIA  175 (372)
T ss_pred             hHHHHhccCCEEEEeCCh-hhHHH-HHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCceeecCCchH
Confidence            788999999999999994 23333 347788889999999999887333211         12222211  112221  2


Q ss_pred             eccCCCCCC-----------CCccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcC
Q psy6348         212 LDVFCEEPP-----------KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANT  265 (333)
Q Consensus       212 lDV~~~EP~-----------~~~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~  265 (333)
                      ..|...++.           ....+..|++.|+..++.---..+.|--     -+.+||.++..|
T Consensus       176 ~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~-----GaLKNVvAiaaG  235 (372)
T KOG2711|consen  176 SEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEIC-----GALKNVVAIAAG  235 (372)
T ss_pred             HHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHh-----hhHHhHHHHhhh
Confidence            233333321           1112567889999988886555555432     345666665555

>PRK05086 malate dehydrogenase; Provisional

Probab=95.26  E-value=0.11  Score=50.01  Aligned_cols=93  Identities=18%  Similarity=0.219  Sum_probs=56.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHh---hCCCEEEEEcCCCCHH----HHHhcC----cc---ccChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGL-GRIGREVALRMQ---AFGMKVIGFDPMVSVE----DAAKLN----IA---SLGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~~----~a~~~g----v~---~~~l~ell~~aDvV~l~~P~t  163 (333)
                      ++++|||. |.||+.+|..+.   ..+.++..+|+.....    ...+.+    +.   ..++.+.++++|+|+++.-..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 999999998773   3556889999754220    111111    11   124457889999999997531


Q ss_pred             hh---hH-hhc------cHHH---HhccCCCcEEEEccCCc
Q psy6348         164 PQ---TK-NLI------NAEV---LKKCKKGVRVVNVARGG  191 (333)
Q Consensus       164 ~~---t~-~li------~~~~---~~~mk~gailIN~aRg~  191 (333)
                      ..   ++ .++      -++.   +....+.+++++++-.-
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~  121 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV  121 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence            11   11 111      1222   23335788999986654

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=95.25  E-value=0.17  Score=51.15  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=73.9

Q ss_pred             cCCCEEEEEec----ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHh
Q psy6348          96 LYGKTLAVLGL----GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        96 l~gktvGIIGl----G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      ++-++|.|||.    |++|..+.+.++..|+  +|+..+|...    +-.|+..+ +++++-...|++++++|. +.+..
T Consensus         5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~----~i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~   79 (447)
T TIGR02717         5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG----EILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQ   79 (447)
T ss_pred             cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC----ccCCccccCCHHHCCCCCCEEEEecCH-HHHHH
Confidence            45689999999    8899999999999887  7988888642    23466544 799988889999999993 44444


Q ss_pred             hccHHHHhccCCCcEEE-EccCCc-----ccchHhHHhhhhcCCceEEE
Q psy6348         169 LINAEVLKKCKKGVRVV-NVARGG-----IVDENALLDSLKCGHCGGAA  211 (333)
Q Consensus       169 li~~~~~~~mk~gailI-N~aRg~-----~vd~~aL~~aL~~g~i~gaa  211 (333)
                      ++ ++..+ ..-..++| .-+-++     ...+++|.+..+++.++-.+
T Consensus        80 ~l-~e~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        80 VV-EECGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             HH-HHHHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            44 33332 33334433 322222     23467788888887766333

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.23  E-value=0.11  Score=45.85  Aligned_cols=76  Identities=17%  Similarity=0.262  Sum_probs=51.1

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C-----------------HH-----HHHhc--Cccc------c---
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S-----------------VE-----DAAKL--NIAS------L---  144 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~-----------------~~-----~a~~~--gv~~------~---  144 (333)
                      +|+|||+|.+|..+|+.|...|. ++..+|... +                 +.     ..++.  .++.      .   
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~   80 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDEN   80 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChh
Confidence            58999999999999999999998 588888653 1                 00     00111  1111      0   


Q ss_pred             ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348         145 GLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus       145 ~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      +++++++++|+|+.++ .+.+++..+.....+
T Consensus        81 ~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~  111 (174)
T cd01487          81 NLEGLFGDCDIVVEAF-DNAETKAMLAESLLG  111 (174)
T ss_pred             hHHHHhcCCCEEEECC-CCHHHHHHHHHHHHH
Confidence            2356788899888884 467777766665554

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.22  E-value=0.044  Score=54.68  Aligned_cols=103  Identities=16%  Similarity=0.072  Sum_probs=63.8

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhc--cCCCEEEEe--cC-Cchhh---Hhhcc
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIW--PLADYITVH--TP-LIPQT---KNLIN  171 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell--~~aDvV~l~--~P-~t~~t---~~li~  171 (333)
                      ++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+...+ ++.+  .++|+|+..  +| .++..   +.+++
T Consensus         2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~sp~i~~~~~~~~~a~~i~~   79 (401)
T PRK03815          2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPSPGIPPSHPLIQKAKNLIS   79 (401)
T ss_pred             eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEECCCCCCCCHHHHHHHHHhh
Confidence            6899999999999999999 99999999955422222334665432 2233  468987665  33 22221   22343


Q ss_pred             HHHH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         172 AEVL-KKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       172 ~~~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      +-++ ..+.+..+-|--+-|+--...-+...|+.
T Consensus        80 ~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~  113 (401)
T PRK03815         80 EYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED  113 (401)
T ss_pred             HHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            3322 22223355555567777777777777764

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=95.20  E-value=0.04  Score=49.89  Aligned_cols=63  Identities=22%  Similarity=0.209  Sum_probs=49.8

Q ss_pred             EEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH---HHHhcCcccc--------ChhhhccCCCEEEEecCCc
Q psy6348         101 LAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE---DAAKLNIASL--------GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus       101 vGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~~gv~~~--------~l~ell~~aDvV~l~~P~t  163 (333)
                      |.|+|. |.+|+.+++.|...+++|.+.-|..+..   ..+..|++.+        ++.++++.+|.|++++|..
T Consensus         1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~   75 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS   75 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred             CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence            678996 9999999999999999999988876432   2345676532        4667899999999999943

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.17  E-value=0.058  Score=54.64  Aligned_cols=107  Identities=20%  Similarity=0.257  Sum_probs=63.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc-Ccccc--ChhhhccCCCEEEEec--C-CchhhH--
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL-NIASL--GLEDIWPLADYITVHT--P-LIPQTK--  167 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-gv~~~--~l~ell~~aDvV~l~~--P-~t~~t~--  167 (333)
                      .||+++|+|+|.-|.+.|+.|+. |.+|+++|..... ....+. .....  ...+.+.++|+|+..=  | .++...  
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPgI~~~~p~~~~a   83 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPGIPLTHEIVKIA   83 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCCCCCCCHHHHHH
Confidence            47899999999999999999995 9999999954322 111111 11111  1234567899887752  2 222111  


Q ss_pred             -----hhccHHHH--hccCC-CcEEEEccCCcccchHhHHhhhhc
Q psy6348         168 -----NLINAEVL--KKCKK-GVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       168 -----~li~~~~~--~~mk~-gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                           .++++-++  ..+++ ..+=|--+.|+--...-+...|+.
T Consensus        84 ~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         84 KNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             HHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence                 13333333  33333 234444456777777777777775

>PRK10206 putative oxidoreductase; Provisional

Probab=95.13  E-value=0.054  Score=52.79  Aligned_cols=65  Identities=17%  Similarity=0.132  Sum_probs=43.6

Q ss_pred             EEEEEecChHHHH-HHHHHhh--CCCEEEE-EcCCCCH-HHHHhcC-ccc-cChhhhcc--CCCEEEEecCCch
Q psy6348         100 TLAVLGLGRIGRE-VALRMQA--FGMKVIG-FDPMVSV-EDAAKLN-IAS-LGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus       100 tvGIIGlG~IG~~-vA~~l~~--~G~~V~~-~d~~~~~-~~a~~~g-v~~-~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      ++||||+|.+++. .+..+..  -++++.+ +|+.... +.+++.+ +.. .++++++.  +.|+|++++|...
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~   76 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADS   76 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            7999999998764 3444422  3678764 7876532 2234444 433 37999996  5799999999544

>PTZ00325 malate dehydrogenase; Provisional

Probab=95.12  E-value=0.04  Score=53.42  Aligned_cols=67  Identities=24%  Similarity=0.223  Sum_probs=46.0

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHhc-----Ccccc---C---hhhhccCCCEEEEecC
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQA--FGMKVIGFDPMVSVEDAAKL-----NIASL---G---LEDIWPLADYITVHTP  161 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~-----gv~~~---~---l~ell~~aDvV~l~~P  161 (333)
                      ++.+||+|||. |+||+.+|..+..  ...++..+|.......+.++     .....   +   ..+.++.||+|+++.-
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVitaG   85 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICAG   85 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECCC
Confidence            56779999999 9999999998884  44689999983322212110     11111   1   1578999999998865


Q ss_pred             C
Q psy6348         162 L  162 (333)
Q Consensus       162 ~  162 (333)
                      .
T Consensus        86 ~   86 (321)
T PTZ00325         86 V   86 (321)
T ss_pred             C
Confidence            3

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.11  E-value=0.08  Score=47.61  Aligned_cols=38  Identities=21%  Similarity=0.359  Sum_probs=33.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      ..|.+++|.|+|+|.+|..+++.|...|. ++..+|+..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~   55 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRT   55 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCc
Confidence            56899999999999999999999999998 588888653

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.10  E-value=0.056  Score=51.48  Aligned_cols=67  Identities=24%  Similarity=0.276  Sum_probs=46.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHH--HHHhc----Cc---cccC---hhhhccCCCEEEEecC
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVE--DAAKL----NI---ASLG---LEDIWPLADYITVHTP  161 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~----gv---~~~~---l~ell~~aDvV~l~~P  161 (333)
                      ++.||++.|+|.|-.|++++-.|...|+ +|++++|.....  .+...    +.   ...+   +++.+..+|+|+.++|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp  203 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP  203 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence            5678999999999999999999999997 789999965321  11111    11   1112   2334566777777777

>PLN02602 lactate dehydrogenase

Probab=95.09  E-value=0.059  Score=52.89  Aligned_cols=90  Identities=19%  Similarity=0.256  Sum_probs=57.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcC----------cccc---ChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLN----------IASL---GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g----------v~~~---~l~ell~~aDvV~l~~P~t  163 (333)
                      +||+|||.|.||..+|-.+...|.  ++..+|..........+.          ....   +. +.+++||+|+++.-..
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            699999999999999998876665  799999865432222111          1111   22 4589999999985321


Q ss_pred             --h-hhH-hhc--cH-------HHHhccCCCcEEEEccC
Q psy6348         164 --P-QTK-NLI--NA-------EVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       164 --~-~t~-~li--~~-------~~~~~mk~gailIN~aR  189 (333)
                        + .++ .++  +.       +.+....+++++|+++-
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              1 223 111  11       12334567889999974

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.06  E-value=0.097  Score=50.85  Aligned_cols=30  Identities=33%  Similarity=0.655  Sum_probs=24.8

Q ss_pred             EEEEEecChHHHHHHHHHhhCC----CEEEEEcC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFG----MKVIGFDP  129 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~  129 (333)
                      +|||+|+|+||+.+.+.+...+    ++|.....
T Consensus         1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd   34 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE   34 (325)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence            5899999999999999887653    78877654

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=95.05  E-value=0.4  Score=45.97  Aligned_cols=143  Identities=19%  Similarity=0.210  Sum_probs=90.9

Q ss_pred             cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEE
Q psy6348          23 LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLA  102 (333)
Q Consensus        23 Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvG  102 (333)
                      +-.|...+-+-..+. +-|.--+|+|.|.-.--..++-  +++=++.+..                  ..|. ++|+|+.
T Consensus       100 ~D~I~~R~~~~~~ve-~lA~~s~VPViNgLtD~~HP~Q--~LADl~Ti~E------------------~~g~-l~g~k~a  157 (310)
T COG0078         100 VDAIMIRGFSHETLE-ELAKYSGVPVINGLTDEFHPCQ--ALADLMTIKE------------------HFGS-LKGLKLA  157 (310)
T ss_pred             hheEEEecccHHHHH-HHHHhCCCceEcccccccCcHH--HHHHHHHHHH------------------hcCc-ccCcEEE
Confidence            444544444433332 3466789999998653333433  2222332222                  1233 8999999


Q ss_pred             EEecC-hHHHHHHHHHhhCCCEEEEEcCCC---CH---HH----HHhcC--cccc-ChhhhccCCCEEEEecCCch--hh
Q psy6348         103 VLGLG-RIGREVALRMQAFGMKVIGFDPMV---SV---ED----AAKLN--IASL-GLEDIWPLADYITVHTPLIP--QT  166 (333)
Q Consensus       103 IIGlG-~IG~~vA~~l~~~G~~V~~~d~~~---~~---~~----a~~~g--v~~~-~l~ell~~aDvV~l~~P~t~--~t  166 (333)
                      .+|=| +|+.++......+||+|....|..   ..   +.    +++.|  +... ++++.++.||+|..-+...-  +.
T Consensus       158 ~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvWvSMGee~  237 (310)
T COG0078         158 YVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVWVSMGEEA  237 (310)
T ss_pred             EEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCcccCcchh
Confidence            99976 688888888899999999877654   11   12    23334  3443 89999999999987655322  11


Q ss_pred             H-----------hhccHHHHhccCCCcEEEEc
Q psy6348         167 K-----------NLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       167 ~-----------~li~~~~~~~mk~gailIN~  187 (333)
                      .           -.++.+.++.-+++++|..|
T Consensus       238 e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         238 EAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             hhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            1           23567777777888888888

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.04  E-value=0.073  Score=51.08  Aligned_cols=94  Identities=21%  Similarity=0.244  Sum_probs=68.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-------------------------Chh
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-------------------------GLE  147 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-------------------------~l~  147 (333)
                      -...+.++-++|+|-+|...+...+..|.-|..+|-.+ ..+..+..|.++.                         -+.
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~a  239 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELVA  239 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHHH
Confidence            34566788999999999999999999999999998665 2233332332111                         134


Q ss_pred             hhccCCCEEEEe--cCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         148 DIWPLADYITVH--TPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       148 ell~~aDvV~l~--~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +..++.|+|+..  +|..+. -.++.++..+.||||+++|+.+
T Consensus       240 ~~~~~~DivITTAlIPGrpA-P~Lvt~~mv~sMkpGSViVDlA  281 (356)
T COG3288         240 EQAKEVDIVITTALIPGRPA-PKLVTAEMVASMKPGSVIVDLA  281 (356)
T ss_pred             HHhcCCCEEEEecccCCCCC-chhhHHHHHHhcCCCcEEEEeh
Confidence            567899999875  454433 4578899999999999999984

>KOG0022|consensus

Probab=95.03  E-value=0.19  Score=48.44  Aligned_cols=46  Identities=37%  Similarity=0.567  Sum_probs=40.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|.+++|+|+|.+|.+++.-+++.|. ++++.|-.. ..+.++++|++
T Consensus       192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT  239 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT  239 (375)
T ss_pred             CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence            58999999999999999999999998 899999887 44778888875

>PRK08223 hypothetical protein; Validated

Probab=95.03  E-value=0.087  Score=50.29  Aligned_cols=91  Identities=19%  Similarity=0.250  Sum_probs=58.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------HHH----HhcC--cc----
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------EDA----AKLN--IA----  142 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~~a----~~~g--v~----  142 (333)
                      ..|++++|.|||+|.+|..+|..|...|. ++..+|... ..                   +.+    ++..  ++    
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~~  102 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRAF  102 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEEE
Confidence            45889999999999999999999999998 566666432 11                   000    1111  11    


Q ss_pred             -----ccChhhhccCCCEEEEecCCc-hhhHhhccHHHHhccCCCcEEEEc
Q psy6348         143 -----SLGLEDIWPLADYITVHTPLI-PQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       143 -----~~~l~ell~~aDvV~l~~P~t-~~t~~li~~~~~~~mk~gailIN~  187 (333)
                           ..+.+++++++|+|+-++..- -+++.++++.....   +.-+|..
T Consensus       103 ~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~---~iP~V~~  150 (287)
T PRK08223        103 PEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR---GIPALTA  150 (287)
T ss_pred             ecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc---CCCEEEE
Confidence                 113567788899888666421 26777777665543   3345555

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.01  E-value=0.18  Score=42.38  Aligned_cols=32  Identities=31%  Similarity=0.526  Sum_probs=28.8

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      +|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~   33 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT   33 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence            58999999999999999999998 799998753

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=94.98  E-value=0.16  Score=49.57  Aligned_cols=86  Identities=24%  Similarity=0.313  Sum_probs=52.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc-C------hhhhccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL-G------LEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~-~------l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .|++|.|.|.|.+|...++.++.+|.+|++.+.....  +.++++|+..+ +      +.++....|+++-++.. +.  
T Consensus       183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~-~~--  259 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSA-VH--  259 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCC-HH--
Confidence            5889999999999999999999999999887765422  33355665321 1      11222235666655431 11  


Q ss_pred             hhccHHHHhccCCCcEEEEc
Q psy6348         168 NLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~  187 (333)
                       .+ .+.++.++++..++.+
T Consensus       260 -~~-~~~~~~l~~~G~iv~v  277 (360)
T PLN02586        260 -AL-GPLLGLLKVNGKLITL  277 (360)
T ss_pred             -HH-HHHHHHhcCCcEEEEe
Confidence             11 2244555666666655

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=94.97  E-value=0.13  Score=49.89  Aligned_cols=98  Identities=21%  Similarity=0.275  Sum_probs=59.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCCH--HHHHhc-----------Cccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVSV--EDAAKL-----------NIAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~a~~~-----------gv~~-~~l~ell~~aDvV  156 (333)
                      +||+|||. |.||..+|..+...|.       ++..+|.....  ..+..+           .+.. .+..+.+++||+|
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv   82 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA   82 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence            58999999 9999999998876665       79999974322  111111           1111 1345789999999


Q ss_pred             EEecCC--ch-hhHh-hc--cH-------HHHhccC-CCcEEEEccCCcccchHhH
Q psy6348         157 TVHTPL--IP-QTKN-LI--NA-------EVLKKCK-KGVRVVNVARGGIVDENAL  198 (333)
Q Consensus       157 ~l~~P~--t~-~t~~-li--~~-------~~~~~mk-~gailIN~aRg~~vd~~aL  198 (333)
                      +++.-.  .+ .|+- ++  +.       +.+.... +++++|.++  .++|.-.-
T Consensus        83 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~  136 (322)
T cd01338          83 LLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNAL  136 (322)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHH
Confidence            998643  11 1211 11  11       1222234 588999986  55555543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=94.96  E-value=0.051  Score=52.83  Aligned_cols=60  Identities=28%  Similarity=0.460  Sum_probs=43.3

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-H-HHHhcCc--cccC---hhhhccCCCEEEEe
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-E-DAAKLNI--ASLG---LEDIWPLADYITVH  159 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~a~~~gv--~~~~---l~ell~~aDvV~l~  159 (333)
                      ||||||-|..|+.+++.++.+|++|+++|+.... . ...+..+  .+.+   +.++++.||+|+..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e   67 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE   67 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence            5899999999999999999999999999987522 1 1111111  1123   66678889988653

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=94.96  E-value=0.076  Score=50.26  Aligned_cols=63  Identities=19%  Similarity=0.127  Sum_probs=43.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHH--HHHhcCccccChhhh-ccCCCEEEEecCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVE--DAAKLNIASLGLEDI-WPLADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~gv~~~~l~el-l~~aDvV~l~~P~  162 (333)
                      ++++.|+|.|-.+++++..|...|. +|++++|.....  .++..+....  +++ ...+|+|+.++|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~  188 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPI  188 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCcc
Confidence            5789999999999999999999998 599999976321  2222332211  111 2457888888873

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.93  E-value=0.074  Score=52.51  Aligned_cols=90  Identities=23%  Similarity=0.283  Sum_probs=59.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-------------------CH-HH----HHhc--Cccc--c-
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-------------------SV-ED----AAKL--NIAS--L-  144 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~-~~----a~~~--gv~~--~-  144 (333)
                      .|.+++|.|+|+|.+|+.+|..|...|. ++..+|+..                   .+ +.    .++.  .+..  . 
T Consensus       132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~~  211 (376)
T PRK08762        132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALNPDVQVEAVQ  211 (376)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHCCCCEEEEEe
Confidence            5889999999999999999999999998 788888751                   11 11    1111  1111  0 


Q ss_pred             ------ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         145 ------GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       145 ------~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                            +++++++++|+|+.++= +..++.++++...+   .+.-+|..+
T Consensus       212 ~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~---~~ip~i~~~  257 (376)
T PRK08762        212 ERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK---LGKPLVYGA  257 (376)
T ss_pred             ccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH---cCCCEEEEE
Confidence                  23457788998887763 45666666655443   334466553

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=94.89  E-value=0.074  Score=51.19  Aligned_cols=63  Identities=14%  Similarity=0.147  Sum_probs=43.5

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHH--Hh---------cC--ccc--cChhhhccCCCEEEEec
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDA--AK---------LN--IAS--LGLEDIWPLADYITVHT  160 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a--~~---------~g--v~~--~~l~ell~~aDvV~l~~  160 (333)
                      ++|+|+|. |.+|..+|..+...|.  +|+.+|+....+.+  ..         .+  ...  .+-.+.+++||+|+++.
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~~~l~~aDiViita   80 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDLSDVAGSDIVIITA   80 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCHHHhCCCCEEEEec
Confidence            48999998 9999999999988776  59999984311111  11         11  111  11134599999999998


Q ss_pred             C
Q psy6348         161 P  161 (333)
Q Consensus       161 P  161 (333)
                      .
T Consensus        81 g   81 (309)
T cd05294          81 G   81 (309)
T ss_pred             C
Confidence            5

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>CHL00194 ycf39 Ycf39; Provisional

Probab=94.88  E-value=0.069  Score=50.94  Aligned_cols=63  Identities=16%  Similarity=0.144  Sum_probs=46.5

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCcccc--------ChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIASL--------GLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~~--------~l~ell~~aDvV~l~~P  161 (333)
                      ++|.|.|. |.+|+.+++.|...|++|.+.+|..+.. .....+++.+        ++.++++.+|+|+.+.+
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~   73 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST   73 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence            37899995 9999999999999999999998865321 1223354322        35677899999887654

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=94.87  E-value=0.12  Score=49.34  Aligned_cols=45  Identities=33%  Similarity=0.468  Sum_probs=36.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.++.|+|.|.+|...++.++.+|.+ |++.++.. ..+.++++|+
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga  209 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA  209 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence            489999999999999999999999999 99988755 3344555664

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=94.83  E-value=0.16  Score=53.38  Aligned_cols=128  Identities=16%  Similarity=0.165  Sum_probs=81.5

Q ss_pred             CCcEEEECC-CCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccC-CCccccCCCEEEEEecChHHHHHHHHHhhCC
Q psy6348          44 KGVLVLNAP-GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKL-YTGTELYGKTLAVLGLGRIGREVALRMQAFG  121 (333)
Q Consensus        44 ~gI~V~n~p-~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~-~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G  121 (333)
                      .|-.+++-. .-+....||.++-|=|-+.|             |+--. +....|.+.+|.|||+|.+|..+|+.|.+.|
T Consensus       295 l~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~G  361 (664)
T TIGR01381       295 LQPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWG  361 (664)
T ss_pred             cCceEechhhhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcC
Confidence            334445443 34556778888877665554             54321 1125688999999999999999999999999


Q ss_pred             C-EEEEEcCCC------------CHH-----------HH----Hhc--Ccc------c-------c-------------C
Q psy6348         122 M-KVIGFDPMV------------SVE-----------DA----AKL--NIA------S-------L-------------G  145 (333)
Q Consensus       122 ~-~V~~~d~~~------------~~~-----------~a----~~~--gv~------~-------~-------------~  145 (333)
                      . +++.+|...            ..+           .+    ++.  +++      .       +             .
T Consensus       362 Vg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~  441 (664)
T TIGR01381       362 VRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIAR  441 (664)
T ss_pred             CCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHH
Confidence            8 566665211            001           11    111  111      0       1             2


Q ss_pred             hhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         146 LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       146 l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      ++++++++|+|+.++- +-++|.+++.--..   .+..+|+.+
T Consensus       442 l~~Li~~~DvV~d~tD-n~esR~L~n~~c~~---~~kplI~aA  480 (664)
T TIGR01381       442 LEQLIKDHDVVFLLLD-SREARWLPTVLCSR---HKKIAISAA  480 (664)
T ss_pred             HHHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCCEEEEE
Confidence            4568899999999885 77889888766554   344566654

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=94.80  E-value=0.26  Score=41.77  Aligned_cols=96  Identities=20%  Similarity=0.210  Sum_probs=70.4

Q ss_pred             HHHHHHhhCCCEEEEEcCC-----CCHHHHHhcCccccC-hhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEE
Q psy6348         112 EVALRMQAFGMKVIGFDPM-----VSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV  185 (333)
Q Consensus       112 ~vA~~l~~~G~~V~~~d~~-----~~~~~a~~~gv~~~~-l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI  185 (333)
                      ..+++|...|++|++=.-.     .+.+...+.|.+.++ .++++++||+|+-.-|.+        .+.++.|++|.++|
T Consensus        18 ~~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li   89 (136)
T PF05222_consen   18 EDVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLI   89 (136)
T ss_dssp             HHHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEE
T ss_pred             HHHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEE
Confidence            4567888889999985432     245666778988775 458999999998776532        56778899999999


Q ss_pred             EccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         186 NVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       186 N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      -...-.  ....+++.|.+.++...++|....
T Consensus        90 ~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   90 GFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             Eeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            876555  588899999999999899887554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.75  E-value=0.079  Score=57.46  Aligned_cols=107  Identities=15%  Similarity=0.101  Sum_probs=69.2

Q ss_pred             CEEEEEecChHHHHH-HHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEec--C-CchhhH---
Q psy6348          99 KTLAVLGLGRIGREV-ALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVHT--P-LIPQTK---  167 (333)
Q Consensus        99 ktvGIIGlG~IG~~v-A~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~~--P-~t~~t~---  167 (333)
                      +++.|+|+|..|.+. |+.|+..|++|.++|.....  +..++.|+...  ...+.+.++|+|+..-  | .++...   
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~   84 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK   84 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence            469999999999998 99999999999999976532  23445576553  2345677899988752  2 222211   


Q ss_pred             ----hhccHHHH-hc-cCC-CcEEEEccCCcccchHhHHhhhhcC
Q psy6348         168 ----NLINAEVL-KK-CKK-GVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       168 ----~li~~~~~-~~-mk~-gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                          .++++-++ .. ++. ..+-|--+.|+--...-+...|++.
T Consensus        85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~  129 (809)
T PRK14573         85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA  129 (809)
T ss_pred             HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence                12333332 23 332 3455555678877777777777763

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.74  E-value=0.098  Score=55.36  Aligned_cols=67  Identities=22%  Similarity=0.212  Sum_probs=50.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCccc---------c
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIAS---------L  144 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~---------~  144 (333)
                      -.|++|.|||.|..|...|..|+..|++|++|++...                      .+.++++|+++         .
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~i  404 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGIEFELNCEVGKDI  404 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeeecCCCccCCHHHHHHHHHHHHHCCeEEECCCEeCCcC
Confidence            3689999999999999999999999999999986432                      12334556543         1


Q ss_pred             ChhhhccCCCEEEEecCC
Q psy6348         145 GLEDIWPLADYITVHTPL  162 (333)
Q Consensus       145 ~l~ell~~aDvV~l~~P~  162 (333)
                      +++++..+.|.|++++-.
T Consensus       405 ~~~~~~~~~DavilAtGa  422 (654)
T PRK12769        405 SLESLLEDYDAVFVGVGT  422 (654)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            445666789999998753

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=94.73  E-value=0.077  Score=52.74  Aligned_cols=64  Identities=19%  Similarity=0.190  Sum_probs=51.9

Q ss_pred             cCCCEEEEEecC----------hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecC
Q psy6348          96 LYGKTLAVLGLG----------RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTP  161 (333)
Q Consensus        96 l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P  161 (333)
                      ..|++|+|+|+.          .-...+++.|...|.+|.+|||......  .+++.+. +++++++.||.|++..-
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  368 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNRM  368 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcCC
Confidence            368999999994          3566899999999999999999864432  4467665 79999999999999753

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=94.71  E-value=0.069  Score=51.44  Aligned_cols=62  Identities=26%  Similarity=0.331  Sum_probs=43.4

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcC------------ccc-cChhhhccCCCEEEEecC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLN------------IAS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g------------v~~-~~l~ell~~aDvV~l~~P  161 (333)
                      ||+|||.|.||..+|..+...|.  ++..+|........+.+.            +.. ..-.+.+++||+|+++.-
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG   77 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG   77 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence            68999999999999988876565  799999865432222211            111 122478899999999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=94.70  E-value=0.058  Score=43.91  Aligned_cols=96  Identities=21%  Similarity=0.266  Sum_probs=57.3

Q ss_pred             ecChHHHHHHHHHhhC----CCEEEE-EcCC--CCHHHHHh--cCccccChhhhcc--CCCEEEEecCCchhhHhhccHH
Q psy6348         105 GLGRIGREVALRMQAF----GMKVIG-FDPM--VSVEDAAK--LNIASLGLEDIWP--LADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus       105 GlG~IG~~vA~~l~~~----G~~V~~-~d~~--~~~~~a~~--~gv~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      |+|.||+.+++.+...    +++|.+ +|+.  .+......  ......++++++.  ..|+|+=|.+..+. .    +-
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~~-~----~~   75 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEAV-A----EY   75 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHHH-H----HH
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchHH-H----HH
Confidence            8999999999999865    677665 4665  11112111  1223348899988  99999999663222 2    23


Q ss_pred             HHhccCCCcEEEEccCCccc---chHhHHhhhhcC
Q psy6348         174 VLKKCKKGVRVVNVARGGIV---DENALLDSLKCG  205 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~v---d~~aL~~aL~~g  205 (333)
                      ..+.|+.|.-+|-.+-+.+.   ..+.|.++.+++
T Consensus        76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~  110 (117)
T PF03447_consen   76 YEKALERGKHVVTANKGALADEALYEELREAARKN  110 (117)
T ss_dssp             HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHc
Confidence            34556788899998888877   333344444443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PRK15076 alpha-galactosidase; Provisional

Probab=94.69  E-value=0.11  Score=52.28  Aligned_cols=112  Identities=12%  Similarity=0.067  Sum_probs=67.4

Q ss_pred             CEEEEEecChHHHHHHH--HH---hhC-CCEEEEEcCCCCHHH-H--------HhcCc--cc---cChhhhccCCCEEEE
Q psy6348          99 KTLAVLGLGRIGREVAL--RM---QAF-GMKVIGFDPMVSVED-A--------AKLNI--AS---LGLEDIWPLADYITV  158 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~--~l---~~~-G~~V~~~d~~~~~~~-a--------~~~gv--~~---~~l~ell~~aDvV~l  158 (333)
                      .||+|||.|.+|...+.  .+   .++ |.+|+.||....... .        ...+.  +.   .++.+.+++||+|+.
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~   81 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVIN   81 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeE
Confidence            58999999999965543  22   233 569999998652211 1        11121  11   256799999999999


Q ss_pred             ecCCc--hhhH----------h----------------------hcc--HHHHhccCCCcEEEEccCCcccchHhHHhhh
Q psy6348         159 HTPLI--PQTK----------N----------------------LIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSL  202 (333)
Q Consensus       159 ~~P~t--~~t~----------~----------------------li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL  202 (333)
                      +.-..  ..-+          |                      ++-  .+.++...|++++||.+-.-=+-..++. .+
T Consensus        82 ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~~-~~  160 (431)
T PRK15076         82 AIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAMN-RY  160 (431)
T ss_pred             eeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHh-cC
Confidence            87542  1110          0                      000  1223445689999999887755555665 33


Q ss_pred             hcCCceEEE
Q psy6348         203 KCGHCGGAA  211 (333)
Q Consensus       203 ~~g~i~gaa  211 (333)
                      ...++.|.+
T Consensus       161 ~~~rviG~c  169 (431)
T PRK15076        161 PGIKTVGLC  169 (431)
T ss_pred             CCCCEEEEC
Confidence            445666654

>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=94.69  E-value=0.15  Score=45.85  Aligned_cols=37  Identities=27%  Similarity=0.273  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +++||++.|.|. |.||+.+++.+...|++|++.++..
T Consensus         2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~   39 (238)
T PRK05786          2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE   39 (238)
T ss_pred             CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            467899999998 7899999999999999999999865

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=94.68  E-value=0.21  Score=48.84  Aligned_cols=87  Identities=25%  Similarity=0.229  Sum_probs=59.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHh-cCcccc-Ch-h--------hhc--cCCCEEEEecCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAK-LNIASL-GL-E--------DIW--PLADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~-~gv~~~-~l-~--------ell--~~aDvV~l~~P~  162 (333)
                      +.++.|+|.|.||...+..++.+|. +|++.|+.. ..+.+++ .+.... +. +        ++-  ..+|+++-|+. 
T Consensus       169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-  247 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-  247 (350)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-
Confidence            3499999999999999999999996 677788876 4466666 444432 11 1        222  24899998886 


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      ++.    .-.+.++..+++..++.++-
T Consensus       248 ~~~----~~~~ai~~~r~gG~v~~vGv  270 (350)
T COG1063         248 SPP----ALDQALEALRPGGTVVVVGV  270 (350)
T ss_pred             CHH----HHHHHHHHhcCCCEEEEEec
Confidence            222    11455666788877777654

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=94.65  E-value=0.17  Score=48.33  Aligned_cols=87  Identities=25%  Similarity=0.240  Sum_probs=54.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Ch------hhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GL------EDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l------~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .|.++.|.|.|.+|+.+++.++++|++|++.++.. ..+.+.++|+..+ ..      ++.-...|+++-+++..     
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~-----  243 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSAS-----  243 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCc-----
Confidence            57899999999999999999999999999998765 3344455554321 10      11123456666555421     


Q ss_pred             hccHHHHhccCCCcEEEEcc
Q psy6348         169 LINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~a  188 (333)
                      ......++.++++..+++++
T Consensus       244 ~~~~~~~~~l~~~G~~v~~g  263 (337)
T cd05283         244 HDLDPYLSLLKPGGTLVLVG  263 (337)
T ss_pred             chHHHHHHHhcCCCEEEEEe
Confidence            11133445556655666553

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=94.64  E-value=0.2  Score=48.26  Aligned_cols=88  Identities=14%  Similarity=0.104  Sum_probs=52.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCC-HHHHHhcCccccChhhhcc--CCCEEEEecCCchhhHhhcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVS-VEDAAKLNIASLGLEDIWP--LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~--~aDvV~l~~P~t~~t~~li~  171 (333)
                      .|.++.|+|.|.||...++.++. +| .+|++.|+... .+.+++.+... ..+++.+  ..|+|+=++... .+...+ 
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~-~~~~~~~~~g~d~viD~~G~~-~~~~~~-  239 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY-LIDDIPEDLAVDHAFECVGGR-GSQSAI-  239 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee-ehhhhhhccCCcEEEECCCCC-ccHHHH-
Confidence            48899999999999999888875 54 68999998653 23444433321 1122212  367777666421 011111 


Q ss_pred             HHHHhccCCCcEEEEc
Q psy6348         172 AEVLKKCKKGVRVVNV  187 (333)
Q Consensus       172 ~~~~~~mk~gailIN~  187 (333)
                      ...+..++++..++.+
T Consensus       240 ~~~~~~l~~~G~iv~~  255 (341)
T cd08237         240 NQIIDYIRPQGTIGLM  255 (341)
T ss_pred             HHHHHhCcCCcEEEEE
Confidence            3345667777666655

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PRK07411 hypothetical protein; Validated

Probab=94.64  E-value=0.078  Score=52.74  Aligned_cols=86  Identities=21%  Similarity=0.193  Sum_probs=57.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-----------H------------HHHhc--Ccc----
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-----------E------------DAAKL--NIA----  142 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-----------~------------~a~~~--gv~----  142 (333)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|+.. ..           .            ..++.  .++    
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~~  113 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDLY  113 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEEE
Confidence            46889999999999999999999999998 677777532 11           0            00111  111    


Q ss_pred             --cc---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCC
Q psy6348         143 --SL---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK  180 (333)
Q Consensus       143 --~~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~  180 (333)
                        ..   +..+++.++|+|+.|+ ++.+++.++++-..+.-+|
T Consensus       114 ~~~~~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        114 ETRLSSENALDILAPYDVVVDGT-DNFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             ecccCHHhHHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCC
Confidence              11   2346788999888776 4567888887766554333

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.64  E-value=0.1  Score=51.54  Aligned_cols=82  Identities=18%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------H----HHHhc--Ccc--c-
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------E----DAAKL--NIA--S-  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~----~a~~~--gv~--~-  143 (333)
                      ..|.+++|.|||+|.+|..+++.|...|. ++..+|+.. +.                   +    ...+.  .++  . 
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~  116 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEIQPDIRVNAL  116 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHHCCCCeeEEe
Confidence            46899999999999999999999999997 788887542 00                   0    00111  111  1 


Q ss_pred             ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348         144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus       144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                         .   +.+++++++|+|+.|+ ++.+++.++++....
T Consensus       117 ~~~i~~~~~~~~~~~~DlVid~~-Dn~~~r~~in~~~~~  154 (370)
T PRK05600        117 RERLTAENAVELLNGVDLVLDGS-DSFATKFLVADAAEI  154 (370)
T ss_pred             eeecCHHHHHHHHhCCCEEEECC-CCHHHHHHHHHHHHH
Confidence               1   3456889999987776 467788888766544

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=94.63  E-value=0.19  Score=49.49  Aligned_cols=45  Identities=31%  Similarity=0.414  Sum_probs=36.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC--HHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--VEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~gv  141 (333)
                      .|+++.|.|.|.+|...++.++++|.+|++.++...  .+.++++|+
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa  224 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGA  224 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCC
Confidence            589999999999999999999999999999887542  234445554

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.62  E-value=0.091  Score=55.47  Aligned_cols=67  Identities=21%  Similarity=0.185  Sum_probs=51.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCccc---------c
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIAS---------L  144 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~---------~  144 (333)
                      ..||+|.|||.|..|...|..|+..|++|++|++...                      .+..+++|+++         .
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  387 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNCEIGRDI  387 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCCccCCcC
Confidence            3699999999999999999999999999999986531                      12334556532         2


Q ss_pred             ChhhhccCCCEEEEecCC
Q psy6348         145 GLEDIWPLADYITVHTPL  162 (333)
Q Consensus       145 ~l~ell~~aDvV~l~~P~  162 (333)
                      +++++....|.|++++-.
T Consensus       388 ~~~~l~~~~DaV~latGa  405 (639)
T PRK12809        388 TFSDLTSEYDAVFIGVGT  405 (639)
T ss_pred             CHHHHHhcCCEEEEeCCC
Confidence            455677789999998754

>PRK07877 hypothetical protein; Provisional

Probab=94.62  E-value=0.1  Score=55.81  Aligned_cols=82  Identities=18%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCC-C-----------------H-HHHH----hc--Ccc----
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMV-S-----------------V-EDAA----KL--NIA----  142 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~-----------------~-~~a~----~~--gv~----  142 (333)
                      ..|.+++|+|||+| +|+.+|..|...|.  ++..+|... .                 + +.++    +.  .++    
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~  181 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF  181 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence            35899999999999 99999999998884  777776321 0                 0 0011    11  111    


Q ss_pred             -----ccChhhhccCCCEEEEecCCchhhHhhccHHHHhc
Q psy6348         143 -----SLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK  177 (333)
Q Consensus       143 -----~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~  177 (333)
                           ..++++++.++|+|+-|+- +-+++.++++...++
T Consensus       182 ~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        182 TDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             eccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence                 1157788999999998885 678899998777654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.61  E-value=0.1  Score=52.52  Aligned_cols=105  Identities=22%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH------HHHHhcCcccc---Chh-----hhccCCCEEEEecCCchh
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV------EDAAKLNIASL---GLE-----DIWPLADYITVHTPLIPQ  165 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~------~~a~~~gv~~~---~l~-----ell~~aDvV~l~~P~t~~  165 (333)
                      ++.|||+|..|.+.|+.|...|++|.++|.....      ...++.|++..   ..+     +.+.+.|.|+..-...+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~gi~~~   81 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPGIPWD   81 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCCCCCC
Confidence            6899999999999999999999999999976532      12344576542   222     467789988874322221


Q ss_pred             hHh----------hccHHHH--hccCC-CcEEEEccCCcccchHhHHhhhhc
Q psy6348         166 TKN----------LINAEVL--KKCKK-GVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       166 t~~----------li~~~~~--~~mk~-gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ..-          ++.+-.+  ..+++ ..+-|--+.|+--...-|...|+.
T Consensus        82 ~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~  133 (459)
T PRK02705         82 HPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA  133 (459)
T ss_pred             CHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            111          1232222  33333 344555566777777766677754

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=94.57  E-value=0.13  Score=49.60  Aligned_cols=45  Identities=22%  Similarity=0.337  Sum_probs=36.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.++.|.|.|.+|...++.+++.|.+|++.++.. ..+.++++|+
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga  211 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA  211 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence            48899999999999999999999999999988755 2344455554

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.56  E-value=0.11  Score=51.03  Aligned_cols=82  Identities=23%  Similarity=0.271  Sum_probs=55.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C------------------H-HHH----Hhc--Ccc--c-
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S------------------V-EDA----AKL--NIA--S-  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~------------------~-~~a----~~~--gv~--~-  143 (333)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. +                  + +.+    ++.  .++  . 
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~v~~~  103 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREAMLALNPDVKVTVS  103 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHHHHHHCCCcEEEEE
Confidence            46899999999999999999999999998 677777542 0                  0 000    111  111  1 


Q ss_pred             ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348         144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus       144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                         .   +..++++++|+|+.++- +..++.+++.-..+
T Consensus       104 ~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~  141 (355)
T PRK05597        104 VRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAAR  141 (355)
T ss_pred             EeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence               1   23467889998888874 56777777665544

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=94.56  E-value=0.4  Score=49.51  Aligned_cols=96  Identities=18%  Similarity=0.087  Sum_probs=66.2

Q ss_pred             ccccCCCEEEEEec---ChHHHHHHHHHhhCC-CEEEEEcCCC---CH---HHHHhcCc--cc-cChhhhccCCCEE--E
Q psy6348          93 GTELYGKTLAVLGL---GRIGREVALRMQAFG-MKVIGFDPMV---SV---EDAAKLNI--AS-LGLEDIWPLADYI--T  157 (333)
Q Consensus        93 g~~l~gktvGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~---~~a~~~gv--~~-~~l~ell~~aDvV--~  157 (333)
                      |..+.|+||++||=   +++..+++..+..|| ++|....|..   ..   +.+++.|.  .. .++++.+++||+.  .
T Consensus       169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw  248 (525)
T PRK13376        169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW  248 (525)
T ss_pred             CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence            33478999999998   689999999999998 9999888743   22   22334454  32 3799999999952  2


Q ss_pred             E-------ecCCc-----hhh--HhhccHHHHhccCCCcEEEEcc
Q psy6348         158 V-------HTPLI-----PQT--KNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       158 l-------~~P~t-----~~t--~~li~~~~~~~mk~gailIN~a  188 (333)
                      .       ..+..     ...  .-.++++.++.+|+++++..+.
T Consensus       249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            3       12110     011  1235788888889999999884

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=94.51  E-value=0.094  Score=52.78  Aligned_cols=105  Identities=20%  Similarity=0.204  Sum_probs=66.5

Q ss_pred             EEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEe--cC-CchhhH-----
Q psy6348         101 LAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVH--TP-LIPQTK-----  167 (333)
Q Consensus       101 vGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~--~P-~t~~t~-----  167 (333)
                      +-+||.|.+|.+ +|+.|+..|++|.++|.....  +..++.|++..  .-.+.+.++|+|+..  +| .++..+     
T Consensus         2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~spgi~~~~p~~~~a~~~   81 (448)
T TIGR01082         2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSAAIKDDNPEIVEAKER   81 (448)
T ss_pred             EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHHHHHHc
Confidence            679999999998 999999999999999976532  22344576543  123456789988875  22 222221     


Q ss_pred             --hhccHH-HH-hccC-CCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         168 --NLINAE-VL-KKCK-KGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       168 --~li~~~-~~-~~mk-~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                        .++++. .+ ..++ ...+-|--+.|+--...-+...|+..
T Consensus        82 ~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~  124 (448)
T TIGR01082        82 GIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEA  124 (448)
T ss_pred             CCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHc
Confidence              123333 22 2233 23455555668877777777777653

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK05442 malate dehydrogenase; Provisional

Probab=94.49  E-value=0.13  Score=49.90  Aligned_cols=97  Identities=19%  Similarity=0.215  Sum_probs=57.7

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCCH--HHHHhc-----------Cccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVSV--EDAAKL-----------NIAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~a~~~-----------gv~~-~~l~ell~~aDvV  156 (333)
                      +||+|||. |.+|..+|-.+...|+       ++..+|.....  ..+..+           .+.. ....+.+++||+|
T Consensus         5 ~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~y~~~~daDiV   84 (326)
T PRK05442          5 VRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVMELDDCAFPLLAGVVITDDPNVAFKDADVA   84 (326)
T ss_pred             cEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeehhhhhhhhhhcCCcEEecChHHHhCCCCEE
Confidence            48999998 9999999988765443       78999974321  111111           1111 1455889999999


Q ss_pred             EEecCC--ch-hhHhh-c--c----HH---HHhc-cCCCcEEEEccCCcccchHh
Q psy6348         157 TVHTPL--IP-QTKNL-I--N----AE---VLKK-CKKGVRVVNVARGGIVDENA  197 (333)
Q Consensus       157 ~l~~P~--t~-~t~~l-i--~----~~---~~~~-mk~gailIN~aRg~~vd~~a  197 (333)
                      +++.-.  .+ +++-- +  +    ++   .+.. -++++++|.++  .++|.-.
T Consensus        85 VitaG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  137 (326)
T PRK05442         85 LLVGARPRGPGMERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG--NPANTNA  137 (326)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC--CchHHHH
Confidence            998642  11 12211 1  1    11   1222 34688999987  5555444

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.46  E-value=0.11  Score=52.20  Aligned_cols=108  Identities=17%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             cCC-CEEEEEecChHHHHHHHHHhhC--CCEEEEEcCCCCHH---HHHhcCcccc--C-hhhhccCCCEEEEec--C-Cc
Q psy6348          96 LYG-KTLAVLGLGRIGREVALRMQAF--GMKVIGFDPMVSVE---DAAKLNIASL--G-LEDIWPLADYITVHT--P-LI  163 (333)
Q Consensus        96 l~g-ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~---~a~~~gv~~~--~-l~ell~~aDvV~l~~--P-~t  163 (333)
                      +.+ |++.|||+|..|.+.++.|...  |++|.++|......   ..+ .|++..  . -.+.+.++|+|+..-  | .+
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~-~g~~~~~g~~~~~~~~~~d~vV~SpgI~~~~   82 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP-EDVELHSGGWNLEWLLEADLVVTNPGIALAT   82 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh-cCCEEEeCCCChHHhccCCEEEECCCCCCCC
Confidence            345 7899999999999999999877  58999999754222   222 266542  1 234457899887753  2 22


Q ss_pred             hhhHh-------hccHH-HH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         164 PQTKN-------LINAE-VL-KKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       164 ~~t~~-------li~~~-~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      +....       ++++- .+ ..++...+-|--+-|+--...-+...|+.
T Consensus        83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            22211       23332 22 23443344555556777766667777764

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=94.44  E-value=0.13  Score=49.78  Aligned_cols=91  Identities=21%  Similarity=0.291  Sum_probs=56.4

Q ss_pred             EEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc--C---cccc------ChhhhccCCCEEEEecCCc--
Q psy6348         100 TLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL--N---IASL------GLEDIWPLADYITVHTPLI--  163 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~--g---v~~~------~l~ell~~aDvV~l~~P~t--  163 (333)
                      ||+|||. |.||..+|-.|...|.  ++..||.......+.++  +   ....      ++.+.+++||+|+++.-..  
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            6899999 9999999988876554  89999976522111111  1   1111      1357899999999986532  


Q ss_pred             h-hhH--------hhcc--HHHHhccCCCcEEEEccCC
Q psy6348         164 P-QTK--------NLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       164 ~-~t~--------~li~--~~~~~~mk~gailIN~aRg  190 (333)
                      + .++        .++.  .+.+....|++++|+++-.
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            1 111        1111  1123334689999999654

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.42  E-value=0.11  Score=50.89  Aligned_cols=86  Identities=17%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCC---EEEEEcCCCCH-HHHHhcCc--cccChh-hhccCCCEEEEecCCchhhHhh
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGM---KVIGFDPMVSV-EDAAKLNI--ASLGLE-DIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~---~V~~~d~~~~~-~~a~~~gv--~~~~l~-ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      ..+|+|||. |.+|+.+.+.|...++   ++.......+. ......+.  ...+++ +.+.++|+|++++|.. ....+
T Consensus         7 ~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~~   85 (344)
T PLN02383          7 GPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKKF   85 (344)
T ss_pred             CCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHHH
Confidence            468999998 9999999999987555   34333222111 11111221  111222 4458899999999943 33333


Q ss_pred             ccHHHHhccCCCcEEEEcc
Q psy6348         170 INAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~a  188 (333)
                      . .+   ..+.|+.+||.|
T Consensus        86 ~-~~---~~~~g~~VIDlS  100 (344)
T PLN02383         86 G-PI---AVDKGAVVVDNS  100 (344)
T ss_pred             H-HH---HHhCCCEEEECC
Confidence            2 11   135789999998

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=94.41  E-value=0.17  Score=49.35  Aligned_cols=45  Identities=31%  Similarity=0.423  Sum_probs=37.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.+|.|.|.|.+|...++.++..|. +|++.++.. ..+.++++|+
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga  237 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA  237 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence            47899999999999999999999999 699988765 3345566665

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=94.40  E-value=0.19  Score=48.45  Aligned_cols=77  Identities=12%  Similarity=0.195  Sum_probs=52.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      -+|+|+|. |-.|.++.++|... .+++........        +...+.+++++++|++++++|. .....+. ...  
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~-~~s~~~~-~~~--   69 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPD-DAAREAV-SLV--   69 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCH-HHHHHHH-HHH--
Confidence            37999998 99999999999864 456655543221        2223566788899999999994 3333332 211  


Q ss_pred             ccCCCcEEEEcc
Q psy6348         177 KCKKGVRVVNVA  188 (333)
Q Consensus       177 ~mk~gailIN~a  188 (333)
                       .+.|..+||.|
T Consensus        70 -~~~g~~VIDlS   80 (310)
T TIGR01851        70 -DNPNTCIIDAS   80 (310)
T ss_pred             -HhCCCEEEECC
Confidence             25688999987

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein

Probab=94.39  E-value=0.23  Score=46.29  Aligned_cols=90  Identities=10%  Similarity=0.076  Sum_probs=55.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCC-----------CEEEEEcCCC-CHHH-------------------HHh----cCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFG-----------MKVIGFDPMV-SVED-------------------AAK----LNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G-----------~~V~~~d~~~-~~~~-------------------a~~----~gv  141 (333)
                      +..+|.|||+|.+|..+++.|...|           .++..+|+.. +...                   +++    .++
T Consensus        10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~~~   89 (244)
T TIGR03736        10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAMGT   89 (244)
T ss_pred             CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhccCc
Confidence            5679999999999999999998753           3889998543 1100                   000    011


Q ss_pred             cc------cChhhhccCCCEEEEecCCchhhHhhccHHHHh--ccCCCcEEEEccC
Q psy6348         142 AS------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLK--KCKKGVRVVNVAR  189 (333)
Q Consensus       142 ~~------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~--~mk~gailIN~aR  189 (333)
                      .+      ++.++.+.++|+|+-|+= +-.++..+++....  .|  ...+++++.
T Consensus        90 ~i~a~~~~~~~~~~~~~~DiVi~avD-n~~aR~~l~~~~~~~~~~--~~~~ld~Gn  142 (244)
T TIGR03736        90 DWTAHPERVERSSTLHRPDIVIGCVD-NRAARLAILRAFEGGYSG--YAYWLDLGN  142 (244)
T ss_pred             eEEEEEeeeCchhhhcCCCEEEECCC-CHHHHHHHHHHHHHhccc--ccceecccC
Confidence            11      111334567888888873 56667777666544  12  246676654

A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=94.32  E-value=0.072  Score=53.34  Aligned_cols=36  Identities=28%  Similarity=0.519  Sum_probs=29.9

Q ss_pred             CEEEEEecChHHHHHHHHHhh-CCCEEEE-EcCCCCHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-FGMKVIG-FDPMVSVE  134 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~-~d~~~~~~  134 (333)
                      .++||.|||+||+.+++.+.. ++++|++ +||....+
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~  123 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAK  123 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHH
Confidence            499999999999999999875 7999888 67665443

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=94.31  E-value=0.2  Score=47.37  Aligned_cols=90  Identities=20%  Similarity=0.152  Sum_probs=58.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCCC-HHHHHhcCccc-cChh-------h--hccCCCEEEEecCCch
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMVS-VEDAAKLNIAS-LGLE-------D--IWPLADYITVHTPLIP  164 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~-~~~a~~~gv~~-~~l~-------e--ll~~aDvV~l~~P~t~  164 (333)
                      .|.++.|+|.|.+|+.+++.+++.|.+ |++.++... .+.+++.|+.. ...+       .  .-+..|+++-+++.. 
T Consensus       159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~-  237 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP-  237 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh-
Confidence            578999999999999999999999998 788877542 23334455421 1111       0  123578887766421 


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                          ....+.+..|+++..++.++...
T Consensus       238 ----~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         238 ----KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             ----HHHHHHHHHHhcCCEEEEEecCC
Confidence                12244466677777888776543

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.26  E-value=0.098  Score=50.85  Aligned_cols=87  Identities=17%  Similarity=0.186  Sum_probs=52.2

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCE---EEEEcCCCCHHHHHhc-C--ccccChh-hhccCCCEEEEecCCchhhHhh
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMK---VIGFDPMVSVEDAAKL-N--IASLGLE-DIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~---V~~~d~~~~~~~a~~~-g--v~~~~l~-ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      +++|+|+|. |.+|+.+.+.|...|+.   +.+..+..+....... +  +...+++ +.+.++|+|++++|. ..++.+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~-g~s~~~   79 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGG-SVSKKY   79 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCCh-HHHHHH
Confidence            468999998 99999999999986653   4555332211111111 2  1122222 234789999999983 233333


Q ss_pred             ccHHHHhccCCCcEEEEccC
Q psy6348         170 INAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aR  189 (333)
                      . .   +.++.|+.+|+.+.
T Consensus        80 ~-~---~~~~~G~~VIDlS~   95 (334)
T PRK14874         80 A-P---KAAAAGAVVIDNSS   95 (334)
T ss_pred             H-H---HHHhCCCEEEECCc
Confidence            2 1   12367889998874

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=94.14  E-value=0.092  Score=50.96  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=55.3

Q ss_pred             EEEEEec-ChHHHHHHHHHhhCC-------CEEEEEcCCCCHH--HHHhcCcc------------ccChhhhccCCCEEE
Q psy6348         100 TLAVLGL-GRIGREVALRMQAFG-------MKVIGFDPMVSVE--DAAKLNIA------------SLGLEDIWPLADYIT  157 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~G-------~~V~~~d~~~~~~--~a~~~gv~------------~~~l~ell~~aDvV~  157 (333)
                      +|+|+|. |.+|+.++..|...+       .+|..+|+....+  ......+.            ..++.+.+++||+|+
T Consensus         4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI   83 (325)
T cd01336           4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI   83 (325)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence            7999999 999999999987644       4899999754221  11111111            125568899999999


Q ss_pred             EecCCch---hhHh-hc--cH-------HHHhcc-CCCcEEEEcc
Q psy6348         158 VHTPLIP---QTKN-LI--NA-------EVLKKC-KKGVRVVNVA  188 (333)
Q Consensus       158 l~~P~t~---~t~~-li--~~-------~~~~~m-k~gailIN~a  188 (333)
                      ++.-...   .++. ++  |.       ..+... ++++++|.++
T Consensus        84 ~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs  128 (325)
T cd01336          84 LVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG  128 (325)
T ss_pred             EeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence            8754321   1211 11  11       123333 5788899887

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PLN00106 malate dehydrogenase

Probab=94.13  E-value=0.11  Score=50.52  Aligned_cols=114  Identities=22%  Similarity=0.237  Sum_probs=66.8

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc-------Ccc----ccChhhhccCCCEEEEecCC-
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL-------NIA----SLGLEDIWPLADYITVHTPL-  162 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~-------gv~----~~~l~ell~~aDvV~l~~P~-  162 (333)
                      .+||+|||. |+||+.+|..|...+.  ++..+|.......+.++       .+.    ..++.+.+++||+|+++.-. 
T Consensus        18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~~   97 (323)
T PLN00106         18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGVP   97 (323)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCCC
Confidence            469999999 9999999998885444  89999976522111110       111    11346889999999998542 


Q ss_pred             -ch-hhHh-hc--c----HH---HHhccCCCcEEEEccCCcc----cchHhHHhh--hhcCCceEEE
Q psy6348         163 -IP-QTKN-LI--N----AE---VLKKCKKGVRVVNVARGGI----VDENALLDS--LKCGHCGGAA  211 (333)
Q Consensus       163 -t~-~t~~-li--~----~~---~~~~mk~gailIN~aRg~~----vd~~aL~~a--L~~g~i~gaa  211 (333)
                       .+ .++. ++  |    ++   .+....+++++++++-.--    +....+.+.  +...++.|.+
T Consensus        98 ~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPvD~~~~i~t~~~~~~s~~p~~~viG~~  164 (323)
T PLN00106         98 RKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPVNSTVPIAAEVLKKAGVYDPKKLFGVT  164 (323)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCCCCcceEEEEe
Confidence             21 1221 11  1    11   2333457899999876543    333333332  2335665554

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.11  E-value=0.057  Score=45.15  Aligned_cols=34  Identities=29%  Similarity=0.500  Sum_probs=29.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      .++|.|+|+|.+|+.+|+.|...|+ ++..+|+..
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcc
Confidence            5799999999999999999999898 788888654

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=94.04  E-value=0.26  Score=46.84  Aligned_cols=85  Identities=19%  Similarity=0.109  Sum_probs=52.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCCCH-HHHHhcCccccChhh-hccCCCEEEEecCCchhhHhhccHH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMVSV-EDAAKLNIASLGLED-IWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~-~~a~~~gv~~~~l~e-ll~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      .|+++.|+|.|.||...++.++.+|.+ |++.|+.... +.+....  ..+.++ .-...|+|+=++... .   .+ ..
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~--~i~~~~~~~~g~Dvvid~~G~~-~---~~-~~  216 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE--VLDPEKDPRRDYRAIYDASGDP-S---LI-DT  216 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc--ccChhhccCCCCCEEEECCCCH-H---HH-HH
Confidence            578999999999999999999999997 5556664311 1222211  112111 123467777766521 1   11 34


Q ss_pred             HHhccCCCcEEEEcc
Q psy6348         174 VLKKCKKGVRVVNVA  188 (333)
Q Consensus       174 ~~~~mk~gailIN~a  188 (333)
                      .++.++++..++.++
T Consensus       217 ~~~~l~~~G~iv~~G  231 (308)
T TIGR01202       217 LVRRLAKGGEIVLAG  231 (308)
T ss_pred             HHHhhhcCcEEEEEe
Confidence            556677777777663

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=94.04  E-value=0.13  Score=51.12  Aligned_cols=83  Identities=20%  Similarity=0.221  Sum_probs=56.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------HHH----Hhc--Cccc---
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------EDA----AKL--NIAS---  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~~a----~~~--gv~~---  143 (333)
                      ..|..++|.|||+|.+|..+|+.|...|. ++..+|... ..                   +.+    ++.  .++.   
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~~np~v~i~~~  117 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVEINPLVNVRLH  117 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHHhCCCcEEEEE
Confidence            45889999999999999999999998887 677777432 10                   000    111  1111   


Q ss_pred             ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHhc
Q psy6348         144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKK  177 (333)
Q Consensus       144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~  177 (333)
                         .   +..++++++|+|+.|+ .+..++.++++-..+.
T Consensus       118 ~~~i~~~~~~~~~~~~D~Vvd~~-d~~~~r~~ln~~~~~~  156 (392)
T PRK07878        118 EFRLDPSNAVELFSQYDLILDGT-DNFATRYLVNDAAVLA  156 (392)
T ss_pred             eccCChhHHHHHHhcCCEEEECC-CCHHHHHHHHHHHHHc
Confidence               1   2346788899888775 4667787777766553

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.98  E-value=0.18  Score=50.67  Aligned_cols=105  Identities=15%  Similarity=0.152  Sum_probs=60.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhC----------CCEEE-EEcCCCCHHHHHh-cCccc-cChhhhcc--CCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF----------GMKVI-GFDPMVSVEDAAK-LNIAS-LGLEDIWP--LADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~----------G~~V~-~~d~~~~~~~a~~-~gv~~-~~l~ell~--~aDvV~l~~P~t  163 (333)
                      -+|||+|+|.||+.+++.+...          +.+|. ++|+......... .+..+ .++++++.  +.|+|+.+++..
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~   83 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGI   83 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCc
Confidence            4799999999999998877432          45554 3576542211111 11222 37889885  479999998743


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHC  207 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i  207 (333)
                      ....    .-..+.|+.|.-+|...-.-.. .-++|.++.++..+
T Consensus        84 ~~~~----~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         84 EPAR----ELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             hHHH----HHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence            2211    1222446677666643222222 22567777666554

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=93.96  E-value=0.22  Score=48.13  Aligned_cols=92  Identities=23%  Similarity=0.287  Sum_probs=57.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc--C---cccc------ChhhhccCCCEEEEecCC--
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL--N---IASL------GLEDIWPLADYITVHTPL--  162 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~--g---v~~~------~l~ell~~aDvV~l~~P~--  162 (333)
                      .||+|||. |.+|..+|-.+...|.  ++..+|.......+.++  +   ....      ++.+.+++||+|+++.-.  
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~   80 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR   80 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence            48999999 9999999999887674  79999976211111111  1   1111      124779999999998643  


Q ss_pred             ch-hhHh-hc--cH-------HHHhccCCCcEEEEccCC
Q psy6348         163 IP-QTKN-LI--NA-------EVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       163 t~-~t~~-li--~~-------~~~~~mk~gailIN~aRg  190 (333)
                      .+ ++|- ++  |.       +.+....|++++|+++-.
T Consensus        81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            22 2222 11  11       123334689999999654

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06182 short chain dehydrogenase; Validated

Probab=93.96  E-value=0.22  Score=46.01  Aligned_cols=35  Identities=34%  Similarity=0.377  Sum_probs=31.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+|++.|.|. |.||+.+|+.|...|++|++.++..
T Consensus         2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~   37 (273)
T PRK06182          2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRV   37 (273)
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999996 8999999999999999999998865

>PRK14851 hypothetical protein; Provisional

Probab=93.94  E-value=0.26  Score=52.56  Aligned_cols=166  Identities=12%  Similarity=0.058  Sum_probs=93.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C------------------H-HHH----Hhc--Cc--c--
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S------------------V-EDA----AKL--NI--A--  142 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~------------------~-~~a----~~~--gv--~--  142 (333)
                      ..|.+++|+|||+|.+|+.+|..|...|. ++...|... .                  + +.+    .+.  .+  +  
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~~inP~~~I~~~  118 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQALSINPFLEITPF  118 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHHHhCCCCeEEEE
Confidence            45889999999999999999999999887 566665321 0                  0 001    111  11  1  


Q ss_pred             -----ccChhhhccCCCEEEEecCC-chhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         143 -----SLGLEDIWPLADYITVHTPL-IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       143 -----~~~l~ell~~aDvV~l~~P~-t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                           ..+++++++++|+|+-++-. +-+++.++++...   +.+.-+|..+-.+.-   ..+-....+..  .--|.|+
T Consensus       119 ~~~i~~~n~~~~l~~~DvVid~~D~~~~~~r~~l~~~c~---~~~iP~i~~g~~G~~---g~~~~~~p~~~--~~~~~~~  190 (679)
T PRK14851        119 PAGINADNMDAFLDGVDVVLDGLDFFQFEIRRTLFNMAR---EKGIPVITAGPLGYS---SAMLVFTPQGM--GFDDYFN  190 (679)
T ss_pred             ecCCChHHHHHHHhCCCEEEECCCCCcHHHHHHHHHHHH---HCCCCEEEeeccccc---ceEEEEcCCCC--CHhHhcc
Confidence                 11356788889988877742 1245556655433   334456655421100   00000111111  0112233


Q ss_pred             CCCC---------------CCccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHH-hHcCCC
Q psy6348         217 EEPP---------------KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIA-LANTNP  267 (333)
Q Consensus       217 ~EP~---------------~~~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~-~~~~~~  267 (333)
                      -+|.               +.+..+..++..+|-++-+-+-++.-+...++..+..+... ++++++
T Consensus       191 ~~~~~~~~~~~~~~~~g~~p~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (679)
T PRK14851        191 IGGKMPEEQKYLRFAMGLAPRPTHIKYMDLSKVDLKGGKGPSLNIACQLCSGMAGTEAVRIILGKGG  257 (679)
T ss_pred             CCCCCChHHHHHHHHhcCCCcchhhccCcHhhcCCccCcCCCccHHHHhhhhhHHHHHHHHhhcCCe
Confidence            3332               01111234466778888888888888888888888888888 556553

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=93.91  E-value=0.18  Score=51.25  Aligned_cols=69  Identities=25%  Similarity=0.251  Sum_probs=51.7

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCcccc---------
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIASL---------  144 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~~---------  144 (333)
                      -.|++|.|||.|.+|...|..|+..|++|+.|+....                      .+..++.|++..         
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~~~  218 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHLNCEVGRDI  218 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEECCCEeCCcc
Confidence            3689999999999999999999999999999986431                      233456676431         


Q ss_pred             ChhhhccCCCEEEEecCCch
Q psy6348         145 GLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus       145 ~l~ell~~aDvV~l~~P~t~  164 (333)
                      .++++..++|.|++++-..+
T Consensus       219 ~~~~~~~~~D~vilAtGa~~  238 (467)
T TIGR01318       219 SLDDLLEDYDAVFLGVGTYR  238 (467)
T ss_pred             CHHHHHhcCCEEEEEeCCCC
Confidence            33455567999999886543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.90  E-value=0.17  Score=52.60  Aligned_cols=69  Identities=23%  Similarity=0.238  Sum_probs=50.7

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC----------------------CHHHHHhcCcccc--------
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV----------------------SVEDAAKLNIASL--------  144 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~----------------------~~~~a~~~gv~~~--------  144 (333)
                      .-.|++|.|||.|.+|...|..|+..|++|+++|+..                      ..+.++++|+...        
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~~~  213 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLGVRVGED  213 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeCCEECCc
Confidence            3469999999999999999999999999999998532                      1133456676421        


Q ss_pred             -ChhhhccCCCEEEEecCCc
Q psy6348         145 -GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus       145 -~l~ell~~aDvV~l~~P~t  163 (333)
                       +.+++-...|+|++++-..
T Consensus       214 ~~~~~~~~~~D~Vi~AtG~~  233 (564)
T PRK12771        214 ITLEQLEGEFDAVFVAIGAQ  233 (564)
T ss_pred             CCHHHHHhhCCEEEEeeCCC
Confidence             2333445689999988643

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=93.80  E-value=0.34  Score=50.54  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=32.4

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      -.||++.|.|. |.||+.+++.|...|++|+++++..
T Consensus        78 ~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~  114 (576)
T PLN03209         78 KDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSA  114 (576)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            35789999997 9999999999999999999998865

>PRK06392 homoserine dehydrogenase; Provisional

Probab=93.77  E-value=0.24  Score=48.13  Aligned_cols=107  Identities=18%  Similarity=0.330  Sum_probs=62.4

Q ss_pred             EEEEEecChHHHHHHHHHhh--------CCCEEEE-EcCCC--------CHHHH---HhcC-c-----cccChhhhc-cC
Q psy6348         100 TLAVLGLGRIGREVALRMQA--------FGMKVIG-FDPMV--------SVEDA---AKLN-I-----ASLGLEDIW-PL  152 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~--------~G~~V~~-~d~~~--------~~~~a---~~~g-v-----~~~~l~ell-~~  152 (333)
                      +|+|+|||.||+.+++.+..        ++.+|.+ +|+..        ..+..   .+.| +     ...++++++ .+
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~   81 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK   81 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence            79999999999999998865        5667655 34432        11111   1101 1     112455553 46


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCc
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHC  207 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i  207 (333)
                      +|+|+=|+|... +-.-.-....+.|+.|.-+|-..-|.+. ..+.|.++.+++..
T Consensus        82 ~DVvVE~t~~~~-~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~  136 (326)
T PRK06392         82 PDVIVDVTPASK-DGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRR  136 (326)
T ss_pred             CCEEEECCCCCC-cCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCC
Confidence            899999987432 1000112234556788888888777664 34556666555543

>PRK13529 malate dehydrogenase; Provisional

Probab=93.76  E-value=2.6  Score=43.79  Aligned_cols=193  Identities=15%  Similarity=0.152  Sum_probs=120.2

Q ss_pred             hhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhh--
Q psy6348          42 TRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA--  119 (333)
Q Consensus        42 ~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~--  119 (333)
                      -+..|+++|+.-   ..+|--+++-+++..|-                  .|..|...++.|.|.|..|..+|+.+..  
T Consensus       260 yr~~i~~FnDDi---QGTaaV~LAgll~A~r~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~  318 (563)
T PRK13529        260 YRDEICTFNDDI---QGTGAVTLAGLLAALKI------------------TGEPLSDQRIVFLGAGSAGCGIADQIVAAM  318 (563)
T ss_pred             hccCCCeecccc---chHHHHHHHHHHHHHHH------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHH
Confidence            345799999853   45566688888888772                  3567888999999999999999998876  


Q ss_pred             --CCC-------EEEEEcCCC----C---HH-----HHHhcC-c-------cccChhhhccCC--CEEEEecCCchhhHh
Q psy6348         120 --FGM-------KVIGFDPMV----S---VE-----DAAKLN-I-------ASLGLEDIWPLA--DYITVHTPLIPQTKN  168 (333)
Q Consensus       120 --~G~-------~V~~~d~~~----~---~~-----~a~~~g-v-------~~~~l~ell~~a--DvV~l~~P~t~~t~~  168 (333)
                        .|+       +++.+|+.-    +   ..     .++... .       ...+|.|+++.+  |+++=+-    ..-+
T Consensus       319 ~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S----~~~g  394 (563)
T PRK13529        319 VREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVS----GQPG  394 (563)
T ss_pred             HHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEec----CCCC
Confidence              688       788888652    1   11     111110 0       113789999988  9887642    2357


Q ss_pred             hccHHHHhccCC---CcEEEEccCCcccchHhHHhhhh--cCC-ceEEEeccCCCCCCC-CccchhhcCCCcEEEccCCC
Q psy6348         169 LINAEVLKKCKK---GVRVVNVARGGIVDENALLDSLK--CGH-CGGAALDVFCEEPPK-SEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       169 li~~~~~~~mk~---gailIN~aRg~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~-~~~~~~L~~~pnvi~TPHi~  241 (333)
                      .|.++.++.|.+   ..+|.=.|....-.|-.-.+|.+  .|+ |.+.+.-.   .|.. ......-=+.-|+++-|=++
T Consensus       395 ~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf---~pv~~~G~~~~p~Q~NN~~iFPGig  471 (563)
T PRK13529        395 AFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPF---APVEYNGKTYPIGQCNNAYIFPGLG  471 (563)
T ss_pred             CCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCC---CCeeeCCeEeccCcCcceeecccch
Confidence            899999999987   89999999877644443344444  354 43333321   1100 00000112567999999886


Q ss_pred             CCc-----HHHHHHHHHHHHHHHHHh
Q psy6348         242 AST-----KEAQIRVAVEIAEQFIAL  262 (333)
Q Consensus       242 ~~t-----~ea~~~~~~~~~~~i~~~  262 (333)
                      =-.     ..--+.|...+++.+.++
T Consensus       472 lGa~~~~a~~Itd~m~~aAA~alA~~  497 (563)
T PRK13529        472 LGVIASGARRVTDGMLMAAAHALADC  497 (563)
T ss_pred             hhhhhcCCcCCCHHHHHHHHHHHHhh
Confidence            211     111234455555555553

>PRK10537 voltage-gated potassium channel; Provisional

Probab=93.68  E-value=0.27  Score=49.00  Aligned_cols=85  Identities=14%  Similarity=0.077  Sum_probs=54.2

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-----C---hhh-hccCCCEEEEecCCchhhHh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-----G---LED-IWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-----~---l~e-ll~~aDvV~l~~P~t~~t~~  168 (333)
                      ..++-|+|+|++|+.+++.|++.|.++++.|+.. .+.....+...+     +   |++ -+++|+.|+++++..+++.-
T Consensus       240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~  318 (393)
T PRK10537        240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAF  318 (393)
T ss_pred             CCeEEEECCChHHHHHHHHHHHCCCCEEEEECch-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHH
Confidence            5689999999999999999999999998888753 222333343221     1   222 25688999888875444333


Q ss_pred             hccHHHHhccCCCcEEE
Q psy6348         169 LINAEVLKKCKKGVRVV  185 (333)
Q Consensus       169 li~~~~~~~mk~gailI  185 (333)
                      .  -...+.+.|+..+|
T Consensus       319 i--vL~ar~l~p~~kII  333 (393)
T PRK10537        319 V--VLAAKEMSSDVKTV  333 (393)
T ss_pred             H--HHHHHHhCCCCcEE
Confidence            2  23344455544433

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=93.63  E-value=0.38  Score=45.50  Aligned_cols=88  Identities=25%  Similarity=0.256  Sum_probs=59.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-Ch-h-----hhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GL-E-----DIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l-~-----ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .|.++.|.|.|.+|+.+++.++++|.+|++.++... .+..++.|.... .. +     ..-...|+++-++....    
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~----  237 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGA----  237 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHH----
Confidence            478999999999999999999999999999887652 233444554211 10 0     11235788877654211    


Q ss_pred             hccHHHHhccCCCcEEEEccC
Q psy6348         169 LINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aR  189 (333)
                       ...+.+..|+++..+++++.
T Consensus       238 -~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         238 -AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             -HHHHHHHhcccCCEEEEECC
Confidence             22555677888888888853

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=93.61  E-value=0.15  Score=49.41  Aligned_cols=97  Identities=23%  Similarity=0.270  Sum_probs=58.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCC----HHHHHhc---------Cccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVS----VEDAAKL---------NIAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~----~~~a~~~---------gv~~-~~l~ell~~aDvV  156 (333)
                      .||+|||. |.+|+.+|..+...|.       ++..+|....    ...+.++         ++.. .+..+.+++||+|
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvV   83 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAA   83 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEE
Confidence            38999998 9999999998887665       7999998431    1122111         0111 1345889999999


Q ss_pred             EEecCCc--h-hhHhh-c--cH-------HHHhccC-CCcEEEEccCCcccchHh
Q psy6348         157 TVHTPLI--P-QTKNL-I--NA-------EVLKKCK-KGVRVVNVARGGIVDENA  197 (333)
Q Consensus       157 ~l~~P~t--~-~t~~l-i--~~-------~~~~~mk-~gailIN~aRg~~vd~~a  197 (333)
                      +++.-..  + +|+-- +  +.       +.+.... |++++|.++  .++|.-.
T Consensus        84 VitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        84 LLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             EEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            9986431  1 22221 1  11       1223333 488999886  4454443

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=93.61  E-value=0.21  Score=52.92  Aligned_cols=67  Identities=21%  Similarity=0.224  Sum_probs=50.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCcccc---------C
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIASL---------G  145 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~~---------~  145 (333)
                      .+|+|.|||.|..|...|..|+..|++|++|++...                      .+...+.|++..         +
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv~  271 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDIT  271 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCccC
Confidence            578999999999999999999999999999986431                      123345565431         3


Q ss_pred             hhhhccCCCEEEEecCCc
Q psy6348         146 LEDIWPLADYITVHTPLI  163 (333)
Q Consensus       146 l~ell~~aDvV~l~~P~t  163 (333)
                      ++++....|.|++++-..
T Consensus       272 ~~~~~~~~DaVilAtGa~  289 (652)
T PRK12814        272 LEELQKEFDAVLLAVGAQ  289 (652)
T ss_pred             HHHHHhhcCEEEEEcCCC
Confidence            455556799999987643

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=93.58  E-value=1.5  Score=42.10  Aligned_cols=99  Identities=19%  Similarity=0.123  Sum_probs=64.5

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC-hHHHHHHHHHh
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG-RIGREVALRMQ  118 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~l~  118 (333)
                      .+..-+|+|+|.-+....++-  +++=++.+.++                  .| .+.|+||++||=+ ++..+++..+.
T Consensus       110 ~a~~~~vPVINa~~~~~HPtQ--aL~Dl~Ti~e~------------------~g-~l~g~kva~vGD~~~v~~S~~~~~~  168 (302)
T PRK14805        110 LAEHGSVPVINALCDLYHPCQ--ALADFLTLAEQ------------------FG-DVSKVKLAYVGDGNNVTHSLMYGAA  168 (302)
T ss_pred             HHHhCCCCEEECCCCCCChHH--HHHHHHHHHHH------------------hC-CcCCcEEEEEcCCCccHHHHHHHHH
Confidence            345578999999765544443  33333333221                  12 3789999999974 67788888899


Q ss_pred             hCCCEEEEEcCCC---CHH-------HHHhcCccc--c-ChhhhccCCCEEEEec
Q psy6348         119 AFGMKVIGFDPMV---SVE-------DAAKLNIAS--L-GLEDIWPLADYITVHT  160 (333)
Q Consensus       119 ~~G~~V~~~d~~~---~~~-------~a~~~gv~~--~-~l~ell~~aDvV~l~~  160 (333)
                      .+|++|....|..   ..+       .+++.|...  . ++ +.++++|+|..-.
T Consensus       169 ~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~  222 (302)
T PRK14805        169 ILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT  222 (302)
T ss_pred             HcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence            9999999988754   111       123346543  2 54 5789999998843

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=93.57  E-value=0.28  Score=47.52  Aligned_cols=45  Identities=24%  Similarity=0.333  Sum_probs=36.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|+++.|.|.|.+|...++.++.+|.+ |++.++.. ..+.++++|.
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga  222 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA  222 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence            488999999999999999999999985 98888765 3345556664

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=93.56  E-value=0.098  Score=46.85  Aligned_cols=63  Identities=21%  Similarity=0.339  Sum_probs=43.1

Q ss_pred             CEEEEEecChHHHHHHH--HHhhCCCEEE-EEcCCCCHHHHHh-cCcccc---Chhhhcc--CCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVAL--RMQAFGMKVI-GFDPMVSVEDAAK-LNIASL---GLEDIWP--LADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~--~l~~~G~~V~-~~d~~~~~~~a~~-~gv~~~---~l~ell~--~aDvV~l~~P~  162 (333)
                      -++.|||.|++|++++.  ..+..||++. +||-.++. ...+ .++...   ++++.++  +.|+.++|+|.
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~-VG~~~~~v~V~~~d~le~~v~~~dv~iaiLtVPa  156 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDK-VGTKIGDVPVYDLDDLEKFVKKNDVEIAILTVPA  156 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHH-hCcccCCeeeechHHHHHHHHhcCccEEEEEccH
Confidence            46999999999999984  4567899865 47765431 1111 233332   4666676  68999999994

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=93.53  E-value=0.31  Score=46.23  Aligned_cols=86  Identities=23%  Similarity=0.143  Sum_probs=55.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-------Chhhhc-----cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-------GLEDIW-----PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-------~l~ell-----~~aDvV~l~~P~  162 (333)
                      .|.+|.|.|. |.+|...++.++.+|.+|++.++.. ..+.++++|+..+       ++.+.+     ...|+++-++..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G~  217 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVGG  217 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCCH
Confidence            5789999995 9999999999999999999887754 3345556665321       111111     135666655531


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                          .. + ...++.++++..+|.++
T Consensus       218 ----~~-~-~~~~~~l~~~G~iv~~G  237 (325)
T TIGR02825       218 ----EF-S-NTVIGQMKKFGRIAICG  237 (325)
T ss_pred             ----HH-H-HHHHHHhCcCcEEEEec
Confidence                11 1 44566677777777664

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=93.51  E-value=0.42  Score=44.01  Aligned_cols=89  Identities=28%  Similarity=0.245  Sum_probs=59.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcC-ccc-cChh-hh--ccCCCEEEEecCCchhhHhh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLN-IAS-LGLE-DI--WPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~g-v~~-~~l~-el--l~~aDvV~l~~P~t~~t~~l  169 (333)
                      .|.++.|.|.|.+|..+++.++++|.+ |++.++.. ..+.+++.| ... .... ..  -...|+++-++....     
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~-----  171 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS-----  171 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence            578999999999999999999999999 99888754 234445556 211 1111 11  135788887665221     


Q ss_pred             ccHHHHhccCCCcEEEEccCC
Q psy6348         170 INAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg  190 (333)
                      .-...+..++++..+++++-.
T Consensus       172 ~~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         172 ALETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             HHHHHHHHhcCCcEEEEEecc
Confidence            124556778888888887643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.44  E-value=0.16  Score=38.35  Aligned_cols=32  Identities=28%  Similarity=0.355  Sum_probs=29.2

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ++.|||.|.+|-.+|..++.+|.+|..+++..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~   32 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSD   32 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccc
Confidence            58899999999999999999999999987654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=93.43  E-value=0.41  Score=46.48  Aligned_cols=88  Identities=19%  Similarity=0.211  Sum_probs=54.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-HHhcCcccc----C---hhhhccCCCEEEEecCCchhh
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-AAKLNIASL----G---LEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~gv~~~----~---l~ell~~aDvV~l~~P~t~~t  166 (333)
                      ..|.++.|.|.|.+|...++.++..|.+|++.++.... .. .+++|+...    +   +.++....|+++-+++...  
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~--  256 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFH--  256 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchH--
Confidence            36889999999999999999999999999888765422 12 234565321    1   1122234566666654211  


Q ss_pred             HhhccHHHHhccCCCcEEEEcc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~a  188 (333)
                         .-...+..++++..++.++
T Consensus       257 ---~~~~~~~~l~~~G~iv~~G  275 (357)
T PLN02514        257 ---PLEPYLSLLKLDGKLILMG  275 (357)
T ss_pred             ---HHHHHHHHhccCCEEEEEC
Confidence               1123445566666666664

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=93.43  E-value=0.4  Score=45.70  Aligned_cols=45  Identities=22%  Similarity=0.343  Sum_probs=36.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.++.|.|.|.+|+.+++.++++|.+|++.++.. ..+.++++|+
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~  208 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGA  208 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCC
Confidence            57899999999999999999999999999988764 3344455554

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN02740 Alcohol dehydrogenase-like

Probab=93.38  E-value=0.37  Score=47.22  Aligned_cols=45  Identities=36%  Similarity=0.558  Sum_probs=37.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga  244 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI  244 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence            58899999999999999999999999 699988765 3345555554

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=93.36  E-value=0.15  Score=45.78  Aligned_cols=64  Identities=16%  Similarity=0.087  Sum_probs=48.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc--------cccChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI--------ASLGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv--------~~~~l~ell~~aDvV~l~~P~t  163 (333)
                      +||+|||. |.+|+.+++-++..|++|.+.-|+.+.-.+. .++        ...++.+.+..-|+|+.+.-..
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~-~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~   73 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLAAR-QGVTILQKDIFDLTSLASDLAGHDAVISAFGAG   73 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc-ccceeecccccChhhhHhhhcCCceEEEeccCC
Confidence            58999998 9999999999999999999998766443221 222        1224557888999999886533

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=93.36  E-value=0.25  Score=47.32  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=54.5

Q ss_pred             EEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcC-----------cccc-ChhhhccCCCEEEEecCC--ch-h
Q psy6348         103 VLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLN-----------IASL-GLEDIWPLADYITVHTPL--IP-Q  165 (333)
Q Consensus       103 IIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-----------v~~~-~l~ell~~aDvV~l~~P~--t~-~  165 (333)
                      |||.|.||..+|..+...+.  ++..||..........+.           +... .-.+.+++||+|+++.-.  .+ .
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~~rk~g~   80 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGAPQKPGE   80 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCCCCCCCC
Confidence            69999999999998876665  799999865432222211           1111 334789999999997543  11 1


Q ss_pred             hH--------hhcc--HHHHhccCCCcEEEEccC
Q psy6348         166 TK--------NLIN--AEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       166 t~--------~li~--~~~~~~mk~gailIN~aR  189 (333)
                      ++        .++.  .+.+....+.+++|+++-
T Consensus        81 ~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN  114 (299)
T TIGR01771        81 TRLELVGRNVRIMKSIVPEVVKSGFDGIFLVATN  114 (299)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            11        1111  122334568899999873

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=93.33  E-value=0.37  Score=45.99  Aligned_cols=92  Identities=21%  Similarity=0.234  Sum_probs=59.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHH-----------------------HHhcC--cc--cc
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVED-----------------------AAKLN--IA--SL  144 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~-----------------------a~~~g--v~--~~  144 (333)
                      ..|...+|.|+|+|.+|.++|+.|...|. ++..+|+.. ....                       .+++.  +.  ..
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~~   94 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEASQARLAELNPYVPVTVS   94 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHHHHHHHHHHCCCCEEEEE
Confidence            45889999999999999999999999998 588888654 1110                       01111  11  11


Q ss_pred             --C-hhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         145 --G-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       145 --~-l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                        . .++.+.+.|+|+.+.- +.+++..+++-..+   .+.-+|.++.
T Consensus        95 ~~~~~~~~l~~fdvVV~~~~-~~~~~~~in~~c~~---~~ipfI~a~~  138 (286)
T cd01491          95 TGPLTTDELLKFQVVVLTDA-SLEDQLKINEFCHS---PGIKFISADT  138 (286)
T ss_pred             eccCCHHHHhcCCEEEEecC-CHHHHHHHHHHHHH---cCCEEEEEec
Confidence              1 2467889998887754 55566566554433   4555666543

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.33  E-value=0.47  Score=47.16  Aligned_cols=93  Identities=25%  Similarity=0.346  Sum_probs=65.4

Q ss_pred             ccccCCCEEEEEec---ChH-------HHHHHHHHhhCCCEEEEEcCCCCHHH--HHhcCccccChhhhccCCCEEEEec
Q psy6348          93 GTELYGKTLAVLGL---GRI-------GREVALRMQAFGMKVIGFDPMVSVED--AAKLNIASLGLEDIWPLADYITVHT  160 (333)
Q Consensus        93 g~~l~gktvGIIGl---G~I-------G~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~gv~~~~l~ell~~aDvV~l~~  160 (333)
                      +..+.|.+|.|+|+   |.+       ...+.+.+...|.+|.+|||+.+.-.  ....+++..++++.++.+|+|++.+
T Consensus       317 ~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~~~~~~~~~~~~~e~al~~~D~vVi~t  396 (436)
T COG0677         317 GKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPTREDGEGVTLAILEEALKDADAVVIAT  396 (436)
T ss_pred             CCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchhhhhccccchhhHHHHhccCCEEEEEe
Confidence            56788999999998   444       34578889999999999999986422  2233345568999999999999986


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      - .++ ...++.+.+..+  ..+++++ |+
T Consensus       397 D-H~~-fk~id~~~i~~~--~~vivDt-rn  421 (436)
T COG0677         397 D-HSE-FKEIDYEAIGKE--AKVIVDT-RN  421 (436)
T ss_pred             c-cHH-hhcCCHHHhccC--CcEEEEC-cc
Confidence            3 112 124666666544  4566665 44

>cd00704 MDH Malate dehydrogenase

Probab=93.25  E-value=0.14  Score=49.58  Aligned_cols=97  Identities=18%  Similarity=0.239  Sum_probs=58.7

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCC--CHHHHHhc-----------Cccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMV--SVEDAAKL-----------NIAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~--~~~~a~~~-----------gv~~-~~l~ell~~aDvV  156 (333)
                      .+|+|+|. |.||+.+|..|...|.       ++..+|...  .......+           ++.. .+..+.+++||+|
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiV   80 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVA   80 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEE
Confidence            37999999 9999999998876443       588899865  22111111           1111 2456889999999


Q ss_pred             EEecCC--ch-hhHh--------hcc--HHHHhcc-CCCcEEEEccCCcccchHh
Q psy6348         157 TVHTPL--IP-QTKN--------LIN--AEVLKKC-KKGVRVVNVARGGIVDENA  197 (333)
Q Consensus       157 ~l~~P~--t~-~t~~--------li~--~~~~~~m-k~gailIN~aRg~~vd~~a  197 (333)
                      +++.-.  .+ +|+-        ++.  .+.+... ++++++|.++  .++|.-.
T Consensus        81 VitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t  133 (323)
T cd00704          81 ILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVG--NPANTNA  133 (323)
T ss_pred             EEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeC--CcHHHHH
Confidence            987532  22 1221        110  1123334 5788888885  5555444

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=93.22  E-value=0.35  Score=46.75  Aligned_cols=77  Identities=13%  Similarity=0.214  Sum_probs=50.1

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCC-CEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFG-MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      .+|+|||. |.+|+++.+.|.... +++..........      .  .+.++.++++|++++++|.. ....+. .+.  
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~------~--~~~~~~~~~~DvvFlalp~~-~s~~~~-~~~--   70 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD------A--AARRELLNAADVAILCLPDD-AAREAV-ALI--   70 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc------c--cCchhhhcCCCEEEECCCHH-HHHHHH-HHH--
Confidence            48999996 999999999998654 3555443322111      1  23456667899999999932 222221 222  


Q ss_pred             ccCCCcEEEEcc
Q psy6348         177 KCKKGVRVVNVA  188 (333)
Q Consensus       177 ~mk~gailIN~a  188 (333)
                       .+.|..+||.|
T Consensus        71 -~~~g~~VIDlS   81 (313)
T PRK11863         71 -DNPATRVIDAS   81 (313)
T ss_pred             -HhCCCEEEECC
Confidence             25789999987

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.22  E-value=0.48  Score=44.64  Aligned_cols=86  Identities=21%  Similarity=0.130  Sum_probs=56.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhhhc--cCCCEEEEecCCchhhHhhccH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIW--PLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell--~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .|.++.|.|.|.+|+.+++.++..|.+|++.+... ..+.++++|+... +.++..  ...|+++-++....   .  -.
T Consensus       155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~---~--~~  229 (319)
T cd08242         155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPS---G--LE  229 (319)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChH---H--HH
Confidence            57899999999999999999999999999887754 3344555676432 222211  34677776653211   1  13


Q ss_pred             HHHhccCCCcEEEEc
Q psy6348         173 EVLKKCKKGVRVVNV  187 (333)
Q Consensus       173 ~~~~~mk~gailIN~  187 (333)
                      ..++.++++..++..
T Consensus       230 ~~~~~l~~~g~~v~~  244 (319)
T cd08242         230 LALRLVRPRGTVVLK  244 (319)
T ss_pred             HHHHHhhcCCEEEEE
Confidence            345567777777653

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.13  E-value=0.4  Score=45.68  Aligned_cols=85  Identities=13%  Similarity=0.112  Sum_probs=54.4

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCC-EEEEEcCCCCH-HHHHh-cCcccc------Chhhhc-----cCCCEEEEecCC
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGM-KVIGFDPMVSV-EDAAK-LNIASL------GLEDIW-----PLADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~-~V~~~d~~~~~-~~a~~-~gv~~~------~l~ell-----~~aDvV~l~~P~  162 (333)
                      |.++.|.|. |.+|....+.++.+|. +|++.++.... +.+++ +|+..+      ++.+.+     ...|+++-++..
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999998 9999999999999999 89998875432 33333 665321      111111     246777665542


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                       +   . + .+.+..++++..+|.++
T Consensus       235 -~---~-~-~~~~~~l~~~G~iv~~G  254 (345)
T cd08293         235 -E---I-S-DTVISQMNENSHIILCG  254 (345)
T ss_pred             -H---H-H-HHHHHHhccCCEEEEEe
Confidence             1   1 1 44566677777777664

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>KOG0024|consensus

Probab=93.08  E-value=0.88  Score=44.15  Aligned_cols=128  Identities=20%  Similarity=0.170  Sum_probs=79.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      .|.++.|+|.|.||-..-..++++|. +|++.|... ..+.++++|++.....+-.   +       ..++.+..+. ..
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~---~-------~~~~~~~~v~-~~  237 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHK---S-------SPQELAELVE-KA  237 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeecccc---c-------cHHHHHHHHH-hh
Confidence            58999999999999999999999998 788888876 4577888887654222111   1       0123333332 12


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~  241 (333)
                      +..-+++ +.++| .|.-+..++-+.+++.|..  ..+=.+..|+.+.|..+  ....++-+++-..
T Consensus       238 ~g~~~~d-~~~dC-sG~~~~~~aai~a~r~gGt--~vlvg~g~~~~~fpi~~--v~~kE~~~~g~fr  298 (354)
T KOG0024|consen  238 LGKKQPD-VTFDC-SGAEVTIRAAIKATRSGGT--VVLVGMGAEEIQFPIID--VALKEVDLRGSFR  298 (354)
T ss_pred             ccccCCC-eEEEc-cCchHHHHHHHHHhccCCE--EEEeccCCCccccChhh--hhhheeeeeeeee
Confidence            2212243 56676 4555666666888888876  45555666664443222  1234566666444

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=93.08  E-value=0.74  Score=46.65  Aligned_cols=100  Identities=16%  Similarity=0.309  Sum_probs=62.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC-------CC--EEEEEcCCCCHHHHHhcC-----------ccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF-------GM--KVIGFDPMVSVEDAAKLN-----------IAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~-------G~--~V~~~d~~~~~~~a~~~g-----------v~~-~~l~ell~~aDvV  156 (333)
                      -+|+|||. |.+|..+|-.+...       |.  +++.+|..........+.           +.. .+-.+.+++||+|
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~~~~v~i~~~~ye~~kdaDiV  180 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPLLREVSIGIDPYEVFQDAEWA  180 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhhcCceEEecCCHHHhCcCCEE
Confidence            48999999 99999999888755       44  788889866443332221           111 1345889999999


Q ss_pred             EEecCC--ch-hhH--------hhcc--HHHHhc-cCCCcEEEEccCCcccchHhHHh
Q psy6348         157 TVHTPL--IP-QTK--------NLIN--AEVLKK-CKKGVRVVNVARGGIVDENALLD  200 (333)
Q Consensus       157 ~l~~P~--t~-~t~--------~li~--~~~~~~-mk~gailIN~aRg~~vd~~aL~~  200 (333)
                      ++..-.  .+ .++        .++.  .+.+.. -.+++++|.++  .++|.-..+-
T Consensus       181 VitAG~prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~  236 (444)
T PLN00112        181 LLIGAKPRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALIC  236 (444)
T ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHH
Confidence            998643  11 111        1111  112333 46789999887  5555555443

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=93.06  E-value=0.47  Score=46.22  Aligned_cols=45  Identities=36%  Similarity=0.411  Sum_probs=36.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.++.|.|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga  231 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGA  231 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence            48899999999999999999999999 799988765 3344555554

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=93.02  E-value=0.28  Score=48.11  Aligned_cols=85  Identities=14%  Similarity=0.243  Sum_probs=51.6

Q ss_pred             CCEEEEEec-ChHHHHHHHHHh-hCCCE---EEEEcCCCCHHHHHhc---Cccc--cChhhhccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQ-AFGMK---VIGFDPMVSVEDAAKL---NIAS--LGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~-~~G~~---V~~~d~~~~~~~a~~~---gv~~--~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      +.+|||||. |.+|+.+.+.|. .-.++   +..+....+....-.+   ....  .+.++ +.++|++++++|. ...+
T Consensus         5 ~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~aS~~saGk~~~~~~~~l~v~~~~~~~-~~~~Divf~a~~~-~~s~   82 (347)
T PRK06728          5 GYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLSSKRSAGKTVQFKGREIIIQEAKINS-FEGVDIAFFSAGG-EVSR   82 (347)
T ss_pred             CCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEECcccCCCCeeeCCcceEEEeCCHHH-hcCCCEEEECCCh-HHHH
Confidence            468999999 999999999998 45666   4444322211111011   1122  24344 4789999999983 2333


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                      .+. ..   ..+.|+.+|+.|
T Consensus        83 ~~~-~~---~~~~G~~VID~S   99 (347)
T PRK06728         83 QFV-NQ---AVSSGAIVIDNT   99 (347)
T ss_pred             HHH-HH---HHHCCCEEEECc
Confidence            332 11   136789999988

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=93.00  E-value=5  Score=41.97  Aligned_cols=193  Identities=15%  Similarity=0.121  Sum_probs=118.4

Q ss_pred             hCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhh---
Q psy6348          43 RKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA---  119 (333)
Q Consensus        43 ~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~---  119 (333)
                      +..|+++|+.-   ..+|--+++-+++..|-                  .|..|...++.|+|.|..|..+|+.+..   
T Consensus       287 r~~i~~FnDDi---QGTaaV~lAgll~A~r~------------------~g~~l~d~riv~~GAGsAgigia~ll~~~~~  345 (581)
T PLN03129        287 RTTHLCFNDDI---QGTAAVALAGLLAALRA------------------TGGDLADQRILFAGAGEAGTGIAELIALAMS  345 (581)
T ss_pred             ccCCCEecccc---chHHHHHHHHHHHHHHH------------------hCCchhhceEEEECCCHHHHHHHHHHHHHHH
Confidence            45899999853   45666688888888772                  3567888999999999999999998876   


Q ss_pred             --CCC-------EEEEEcCCC-------C-H-----HHHHhcCccccChhhhccC--CCEEEEecCCchhhHhhccHHHH
Q psy6348         120 --FGM-------KVIGFDPMV-------S-V-----EDAAKLNIASLGLEDIWPL--ADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus       120 --~G~-------~V~~~d~~~-------~-~-----~~a~~~gv~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                        .|+       +++.+|+.-       . .     ..++. .-...+|.|+++.  .|+++=+-    ..-+.|.++.+
T Consensus       346 ~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~-~~~~~~L~e~v~~vkptvLIG~S----~~~g~Ft~evi  420 (581)
T PLN03129        346 RQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHD-HEPGASLLEAVKAIKPTVLIGLS----GVGGTFTKEVL  420 (581)
T ss_pred             hhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhh-cccCCCHHHHHhccCCCEEEEec----CCCCCCCHHHH
Confidence              476       788888542       1 1     11111 1123489999998  89888653    22478999999


Q ss_pred             hccC---CCcEEEEccCCcccchHhHHhhhh--cCC-ceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCc-----
Q psy6348         176 KKCK---KGVRVVNVARGGIVDENALLDSLK--CGH-CGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST-----  244 (333)
Q Consensus       176 ~~mk---~gailIN~aRg~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t-----  244 (333)
                      +.|.   +..+|.=.|...--.|-.-.+|.+  +|+ |.+.+. -|.+---... ...-=+.-|+++-|-++=-.     
T Consensus       421 ~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~T~G~ai~AtGS-Pf~pv~~~Gr-~~~p~Q~NN~~iFPGiglGal~~~a  498 (581)
T PLN03129        421 EAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGS-PFDPVEYNGK-TFHPGQANNAYIFPGIGLGALLSGA  498 (581)
T ss_pred             HHHHhcCCCCEEEECCCCCCCcCcCHHHHHHhhcCCEEEEeCC-CCCCeeeCCe-eecCccccceeeccchhhHHHhcCC
Confidence            9995   889999888765323322222322  355 332222 1111000000 00112567999999886211     


Q ss_pred             HHHHHHHHHHHHHHHHHhH
Q psy6348         245 KEAQIRVAVEIAEQFIALA  263 (333)
Q Consensus       245 ~ea~~~~~~~~~~~i~~~~  263 (333)
                      ..--+.|-..+++.+.++.
T Consensus       499 ~~Itd~m~~aAA~aLA~~v  517 (581)
T PLN03129        499 IRVTDDMLLAAAEALAAQV  517 (581)
T ss_pred             cCCCHHHHHHHHHHHHHhC
Confidence            1122345555666666543

>PRK14852 hypothetical protein; Provisional

Probab=92.97  E-value=1.2  Score=49.13  Aligned_cols=165  Identities=15%  Similarity=0.109  Sum_probs=91.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-C------------------H-H----HHHhcC--c--c--
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-S------------------V-E----DAAKLN--I--A--  142 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~------------------~-~----~a~~~g--v--~--  142 (333)
                      ..|..++|+|||+|.+|+.+|..|...|. ++...|... .                  + +    ..++.+  +  +  
T Consensus       328 ~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kaevaa~~l~~INP~v~I~~~  407 (989)
T PRK14852        328 RRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLDVMTERALSVNPFLDIRSF  407 (989)
T ss_pred             HHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHHHHHHHHHHHCCCCeEEEE
Confidence            35889999999999999999999999887 566655221 0                  0 0    011111  1  1  


Q ss_pred             -----ccChhhhccCCCEEEEecCCc-hhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         143 -----SLGLEDIWPLADYITVHTPLI-PQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       143 -----~~~l~ell~~aDvV~l~~P~t-~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                           ..+++++++++|+|+-++-.- .+.+..+....   .+.+.-+|..+-.+..-.-.   ....+..  .--|.|.
T Consensus       408 ~~~I~~en~~~fl~~~DiVVDa~D~~~~~~rr~l~~~c---~~~~IP~I~ag~~G~~g~v~---v~~p~~~--~~~~~f~  479 (989)
T PRK14852        408 PEGVAAETIDAFLKDVDLLVDGIDFFALDIRRRLFNRA---LELGIPVITAGPLGYSCALL---VFMPGGM--NFDSYFG  479 (989)
T ss_pred             ecCCCHHHHHHHhhCCCEEEECCCCccHHHHHHHHHHH---HHcCCCEEEeeccccCeeEE---EEcCCCC--CHHHhCC
Confidence                 124678889999999887531 23444444433   24455566654321100000   0000000  0011222


Q ss_pred             CCCCCC---------------ccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHH-hHcCC
Q psy6348         217 EEPPKS---------------EQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIA-LANTN  266 (333)
Q Consensus       217 ~EP~~~---------------~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~-~~~~~  266 (333)
                      -||..+               +.....++..+|-+.=+.+-++.-+..-++-.++.++.+ +++.+
T Consensus       480 ~~~~~p~~~~~~~~~l~~~p~~~~~~~~~~~~~~l~~~~~Ps~~~~~~l~a~~~~~~~~killg~~  545 (989)
T PRK14852        480 IDDDTPPMEGYLRFGMGLAPRPAHLGYMDRRFVSLHDRRGPSLDIACHLCAGMAATEAVRILLHRR  545 (989)
T ss_pred             CCCCCchHhhhhhhhccCCcchhhhcccCcccccccccCCCchHHHHHHhHHHHHHHHHHHHhCCC
Confidence            222100               111123455666666677778888888889999999999 45554

>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family

Probab=92.92  E-value=0.36  Score=42.20  Aligned_cols=63  Identities=25%  Similarity=0.310  Sum_probs=42.8

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEE-cCCCCHHHHHhcCcccc-C---hhhhccCCCEEEEecCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGF-DPMVSVEDAAKLNIASL-G---LEDIWPLADYITVHTPL  162 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~~~~~a~~~gv~~~-~---l~ell~~aDvV~l~~P~  162 (333)
                      ++.|+|.|..|+.++..|+..|+++++| |.........-.|+... +   +.++.++.+.++++++.
T Consensus         1 ~~~I~Gag~~g~~~~~~l~~~g~~vvgfid~~~~~~~~~i~g~pvlg~~~~l~~~~~~~~~~iiai~~   68 (201)
T TIGR03570         1 KLVIIGAGGHGRVVADIAEDSGWEIVGFLDDNPALQGTSVDGLPVLGGDEDLLRYPPDEVDLVVAIGD   68 (201)
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCEEEEEEcCCccccCcccCCccEECCHHHHhhhcccccEEEEEcCC
Confidence            3689999999999999999999999987 54332211112344433 3   33444556888999873

These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=92.90  E-value=0.63  Score=44.32  Aligned_cols=45  Identities=24%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv  141 (333)
                      .|.++.|.|. |.+|+.+++.+++.|.+|++.+.....+.+++.|+
T Consensus       177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~~~~~~~~~g~  222 (350)
T cd08274         177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAAKEEAVRALGA  222 (350)
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCchhhHHHHhcCC
Confidence            4789999999 99999999999999999988765433344455554

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.85  E-value=0.61  Score=44.08  Aligned_cols=88  Identities=23%  Similarity=0.203  Sum_probs=59.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhh-hccCCCEEEEecCCchhhHhhccH
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLED-IWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~e-ll~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ..|.++.|.|.|.+|..+++.+++.|.+|++.++.. ..+.+++.|+... +.++ .-+..|+++.+.+..   .  .-.
T Consensus       166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~vD~vi~~~~~~---~--~~~  240 (329)
T cd08298         166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARELGADWAGDSDDLPPEPLDAAIIFAPVG---A--LVP  240 (329)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHHhCCcEEeccCccCCCcccEEEEcCCcH---H--HHH
Confidence            357899999999999999999999999999887765 3344555665322 2222 113467777664421   1  235


Q ss_pred             HHHhccCCCcEEEEcc
Q psy6348         173 EVLKKCKKGVRVVNVA  188 (333)
Q Consensus       173 ~~~~~mk~gailIN~a  188 (333)
                      +.+..++++..++..+
T Consensus       241 ~~~~~l~~~G~~v~~g  256 (329)
T cd08298         241 AALRAVKKGGRVVLAG  256 (329)
T ss_pred             HHHHHhhcCCEEEEEc
Confidence            5677788887777654

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=92.83  E-value=0.52  Score=45.23  Aligned_cols=45  Identities=29%  Similarity=0.338  Sum_probs=35.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|+++.|.|.|.+|...++.++.+|.+ |++.++.. ..+.++++|+
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga  206 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA  206 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence            578999999999999999999999997 67787754 2233444443

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=92.82  E-value=0.58  Score=45.45  Aligned_cols=46  Identities=30%  Similarity=0.476  Sum_probs=36.6

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv  141 (333)
                      ..|.++.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+
T Consensus       183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga  230 (365)
T cd08277         183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGA  230 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC
Confidence            358999999999999999999999999 799888854 2334445554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=92.81  E-value=0.26  Score=48.07  Aligned_cols=86  Identities=15%  Similarity=0.268  Sum_probs=53.0

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhh--CC-CEEEEEcCCCCHHHHHhc---CccccChhhh-ccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQA--FG-MKVIGFDPMVSVEDAAKL---NIASLGLEDI-WPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~--~G-~~V~~~d~~~~~~~a~~~---gv~~~~l~el-l~~aDvV~l~~P~t~~t~~  168 (333)
                      .+.+|+|||. |.+|+.+.+.|..  +- .++..+....+....-.+   .....++++. +.++|++++++|..     
T Consensus         3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~saG~~~~~~~~~~~v~~~~~~~~~~~Dvvf~a~p~~-----   77 (336)
T PRK08040          3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEESAGETLRFGGKSVTVQDAAEFDWSQAQLAFFVAGRE-----   77 (336)
T ss_pred             CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCcCCceEEECCcceEEEeCchhhccCCCEEEECCCHH-----
Confidence            4568999998 9999999999987  43 355555332211111001   1222245554 37899999999832     


Q ss_pred             hccHHHHhc-cCCCcEEEEcc
Q psy6348         169 LINAEVLKK-CKKGVRVVNVA  188 (333)
Q Consensus       169 li~~~~~~~-mk~gailIN~a  188 (333)
                       +..+.... .+.|+.+|+.|
T Consensus        78 -~s~~~~~~~~~~g~~VIDlS   97 (336)
T PRK08040         78 -ASAAYAEEATNAGCLVIDSS   97 (336)
T ss_pred             -HHHHHHHHHHHCCCEEEECC
Confidence             22222222 25799999998

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=92.81  E-value=0.34  Score=45.45  Aligned_cols=124  Identities=15%  Similarity=0.110  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhC----CC-------EEEEE
Q psy6348          59 ACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF----GM-------KVIGF  127 (333)
Q Consensus        59 vAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~----G~-------~V~~~  127 (333)
                      +|--+++-+++..|-                  .|..|...++.|+|.|..|-.+|+.+...    |+       +++.+
T Consensus         4 TaaV~lAgll~Al~~------------------~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lv   65 (255)
T PF03949_consen    4 TAAVVLAGLLNALRV------------------TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLV   65 (255)
T ss_dssp             HHHHHHHHHHHHHHH------------------HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEE
T ss_pred             hHHHHHHHHHHHHHH------------------hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEE
Confidence            455677778877662                  35678899999999999999999998877    88       48888


Q ss_pred             cCCC-------CHH----HHHhcCcc---ccChhhhccCC--CEEEEecCCchhhHhhccHHHHhccCC---CcEEEEcc
Q psy6348         128 DPMV-------SVE----DAAKLNIA---SLGLEDIWPLA--DYITVHTPLIPQTKNLINAEVLKKCKK---GVRVVNVA  188 (333)
Q Consensus       128 d~~~-------~~~----~a~~~gv~---~~~l~ell~~a--DvV~l~~P~t~~t~~li~~~~~~~mk~---gailIN~a  188 (333)
                      |+.-       ...    ...+..-.   ..+|.|+++.+  |+++=+-    ...+.|.++.++.|.+   ..++.=.|
T Consensus        66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S----~~~g~ft~evv~~Ma~~~erPIIF~LS  141 (255)
T PF03949_consen   66 DSKGLLTDDREDLNPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLS----GQGGAFTEEVVRAMAKHNERPIIFPLS  141 (255)
T ss_dssp             ETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECS----SSTTSS-HHHHHHCHHHSSSEEEEE-S
T ss_pred             eccceEeccCccCChhhhhhhccCcccccccCHHHHHHhcCCCEEEEec----CCCCcCCHHHHHHHhccCCCCEEEECC
Confidence            8642       111    11111111   23899999999  9888653    2578899999999987   89999999


Q ss_pred             CCcccchHhHHhhhhc
Q psy6348         189 RGGIVDENALLDSLKC  204 (333)
Q Consensus       189 Rg~~vd~~aL~~aL~~  204 (333)
                      ....-.|-.-.++.+-
T Consensus       142 NPt~~aE~~peda~~~  157 (255)
T PF03949_consen  142 NPTPKAECTPEDAYEW  157 (255)
T ss_dssp             SSCGGSSS-HHHHHHT
T ss_pred             CCCCcccCCHHHHHhh
Confidence            8776334333333333

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=92.75  E-value=0.7  Score=44.35  Aligned_cols=45  Identities=38%  Similarity=0.432  Sum_probs=35.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~gv  141 (333)
                      .|+++.|.|.|.+|...++.+++.|+ +|++.++... .+.+.++|+
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga  218 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGA  218 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence            58899999999999999999999999 8988887542 233344554

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=92.75  E-value=0.28  Score=54.28  Aligned_cols=67  Identities=25%  Similarity=0.125  Sum_probs=52.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC---------------CH-------HHHHhcCccc---------c
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV---------------SV-------EDAAKLNIAS---------L  144 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~---------------~~-------~~a~~~gv~~---------~  144 (333)
                      -.||+|+|||.|.-|.+.|..|...|++|++|++..               ..       +..++.|+++         +
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~di  383 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTA  383 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEE
Confidence            469999999999999999999999999999997532               00       1234557642         3


Q ss_pred             Chhhhcc-CCCEEEEecCC
Q psy6348         145 GLEDIWP-LADYITVHTPL  162 (333)
Q Consensus       145 ~l~ell~-~aDvV~l~~P~  162 (333)
                      +++++.+ +.|.|++++-.
T Consensus       384 t~~~l~~~~yDAV~LAtGA  402 (944)
T PRK12779        384 TLEDLKAAGFWKIFVGTGA  402 (944)
T ss_pred             eHHHhccccCCEEEEeCCC
Confidence            6788876 69999999764

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=92.71  E-value=0.61  Score=44.93  Aligned_cols=45  Identities=27%  Similarity=0.314  Sum_probs=36.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~gv  141 (333)
                      .|++|.|.|.|.+|..+++.++.+|. +|++.++... .+.++++|+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~  223 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGA  223 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence            68899999999999999999999999 9998887542 233344554

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=92.69  E-value=0.15  Score=49.46  Aligned_cols=96  Identities=19%  Similarity=0.202  Sum_probs=57.8

Q ss_pred             EEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCCH--HHHHhcC-----------cccc-ChhhhccCCCEEE
Q psy6348         100 TLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVSV--EDAAKLN-----------IASL-GLEDIWPLADYIT  157 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~--~~a~~~g-----------v~~~-~l~ell~~aDvV~  157 (333)
                      +|+|||. |.+|+.+|..|...|+       ++..+|.....  ..+..+.           +... +..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999998886444       58899975432  1111111           1111 3458899999999


Q ss_pred             EecCCch---hhHh-hc--c----H---HHHhcc-CCCcEEEEccCCcccchHh
Q psy6348         158 VHTPLIP---QTKN-LI--N----A---EVLKKC-KKGVRVVNVARGGIVDENA  197 (333)
Q Consensus       158 l~~P~t~---~t~~-li--~----~---~~~~~m-k~gailIN~aRg~~vd~~a  197 (333)
                      +..-...   +|+. ++  +    +   +.+... ++++++|.++  .++|.-.
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvs--NPvDv~t  132 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVG--NPANTNA  132 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            8754321   1111 11  1    1   123334 5788999887  5555444

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=92.66  E-value=0.22  Score=48.09  Aligned_cols=67  Identities=19%  Similarity=0.319  Sum_probs=45.0

Q ss_pred             CEEEEEecChHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHhcCc---------c-ccCh---hhhccCCCEEEEec--C
Q psy6348          99 KTLAVLGLGRIGREVALRMQA--FGMKVIGFDPMVSVEDAAKLNI---------A-SLGL---EDIWPLADYITVHT--P  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~~gv---------~-~~~l---~ell~~aDvV~l~~--P  161 (333)
                      +||+|||.|.||+.+|-+|..  ++-++..||..........+..         . .+.-   .+.++.||+|++..  |
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~~~~~~~~~~~~i~~~~~y~~~~~aDiVvitAG~p   80 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLSHAAAPLGSDVKITGDGDYEDLKGADIVVITAGVP   80 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcchhhcchhccCceEEecCCChhhhcCCCEEEEeCCCC
Confidence            589999999999999988854  4458999998632211111111         0 1111   46789999999997  6


Q ss_pred             Cchh
Q psy6348         162 LIPQ  165 (333)
Q Consensus       162 ~t~~  165 (333)
                      ..|.
T Consensus        81 rKpG   84 (313)
T COG0039          81 RKPG   84 (313)
T ss_pred             CCCC
Confidence            5553

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=92.62  E-value=0.81  Score=42.71  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-----------c----ChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348         109 IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-----------L----GLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus       109 IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-----------~----~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      ||..+|.+|...|.+|..|++....+..++.|+..           .    ++++ +..+|+|+++++.. ++...+ +.
T Consensus         2 iG~~~a~~L~~~G~~V~l~~r~~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l-~~   78 (293)
T TIGR00745         2 VGSLYGAYLARAGHDVTLLARGEQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAA-AL   78 (293)
T ss_pred             chHHHHHHHHhCCCcEEEEecHHHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHH-HH
Confidence            78899999999999999999853233344444311           1    2333 56899999999854 455544 44


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhcCCceE
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGG  209 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~g  209 (333)
                      ....+.+++.+|.+.- ++-.++.+.+.+...++.+
T Consensus        79 l~~~l~~~~~iv~~qN-G~g~~~~l~~~~~~~~v~~  113 (293)
T TIGR00745        79 LLPLIGKNTKVLFLQN-GLGHEERLRELLPARRILG  113 (293)
T ss_pred             hHhhcCCCCEEEEccC-CCCCHHHHHHHhCccCEEE
Confidence            5566788888887644 4555667777776555543

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>PRK08374 homoserine dehydrogenase; Provisional

Probab=92.56  E-value=0.66  Score=45.24  Aligned_cols=116  Identities=23%  Similarity=0.295  Sum_probs=63.6

Q ss_pred             CEEEEEecChHHHHHHHHHhh--------CC--CEEEEE-cCCC--------CHHHHH----hcC----c------cccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQA--------FG--MKVIGF-DPMV--------SVEDAA----KLN----I------ASLG  145 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~--------~G--~~V~~~-d~~~--------~~~~a~----~~g----v------~~~~  145 (333)
                      -+|+|+|+|.+|+.+++.+..        +|  .+|.+. |+..        ......    +.+    +      ...+
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~~~~~   82 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEVYNFS   82 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccccCCC
Confidence            489999999999999988765        56  565543 4321        111111    111    1      1125


Q ss_pred             hhhhc--cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCce-EEEeccCCCCC
Q psy6348         146 LEDIW--PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHCG-GAALDVFCEEP  219 (333)
Q Consensus       146 l~ell--~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i~-gaalDV~~~EP  219 (333)
                      +++++  .++|+|+-+++. +...    .-..+.++.|.-+|-...|.+- ..++|.+..++.... .+.-.|...-|
T Consensus        83 ~~ell~~~~~DVvVd~t~~-~~a~----~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~GiP  155 (336)
T PRK08374         83 PEEIVEEIDADIVVDVTND-KNAH----EWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMAGTP  155 (336)
T ss_pred             HHHHHhcCCCCEEEECCCc-HHHH----HHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccccCC
Confidence            67777  479999987752 2222    2233445677777766555332 344555554443322 23344444445

>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase

Probab=92.54  E-value=0.71  Score=41.69  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+.||++-|.|. |.||+.+|+.|...|++|++.++..
T Consensus         2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~   39 (248)
T TIGR01832         2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE   39 (248)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch
Confidence            378999999998 8999999999999999999998754

This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=92.50  E-value=0.72  Score=44.75  Aligned_cols=45  Identities=36%  Similarity=0.560  Sum_probs=36.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga  233 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV  233 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence            58899999999999999999999999 799998765 3344455554

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=92.47  E-value=0.22  Score=46.88  Aligned_cols=63  Identities=16%  Similarity=0.086  Sum_probs=45.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCccc--------cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIAS--------LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~--------~~l~ell~~aDvV~l~~P  161 (333)
                      +++.|.|. |.||+.+++.|...|++|++.++..... .....+++.        .++.++++.+|+|+.+..
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~   73 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA   73 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence            47889985 9999999999999999999999865321 111223322        135667888998887664

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=92.47  E-value=0.35  Score=46.49  Aligned_cols=64  Identities=20%  Similarity=0.279  Sum_probs=49.2

Q ss_pred             cCCCEEEEEe---cChHHHHHHHHHhhCCCEEEEEcCCC--CH----HHHHhcCc--cccCh-hhhccCCCEEEEe
Q psy6348          96 LYGKTLAVLG---LGRIGREVALRMQAFGMKVIGFDPMV--SV----EDAAKLNI--ASLGL-EDIWPLADYITVH  159 (333)
Q Consensus        96 l~gktvGIIG---lG~IG~~vA~~l~~~G~~V~~~d~~~--~~----~~a~~~gv--~~~~l-~ell~~aDvV~l~  159 (333)
                      +.|++|+|+|   +|++-++.+..|+.||.+|..+.|..  .+    +...+.|.  ...+. +|.++++|++.+.
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~l  231 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYML  231 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEee
Confidence            8899999999   79999999999999999999999864  21    22333332  23354 5599999999654

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=92.47  E-value=0.38  Score=45.41  Aligned_cols=65  Identities=14%  Similarity=0.070  Sum_probs=45.3

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH---hc-----Cccc--------cChhhhccCCCEEEE
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA---KL-----NIAS--------LGLEDIWPLADYITV  158 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~---~~-----gv~~--------~~l~ell~~aDvV~l  158 (333)
                      .||++.|.| .|-||+.+++.|.+.|++|++.++.... ....   ..     .+++        ..++++++++|+|+-
T Consensus         3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih   82 (322)
T PLN02662          3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFH   82 (322)
T ss_pred             CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEE
Confidence            368999999 5999999999999999999988765421 1111   00     1111        135677888998877


Q ss_pred             ecC
Q psy6348         159 HTP  161 (333)
Q Consensus       159 ~~P  161 (333)
                      +..
T Consensus        83 ~A~   85 (322)
T PLN02662         83 TAS   85 (322)
T ss_pred             eCC
Confidence            653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=92.46  E-value=0.49  Score=45.86  Aligned_cols=45  Identities=22%  Similarity=0.256  Sum_probs=36.0

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-hcCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-KLNI  141 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~gv  141 (333)
                      .|.++.|.|. |.+|...++.++.+|.+|++.++.... +.++ ++|+
T Consensus       158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa  205 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF  205 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC
Confidence            5889999999 999999999999999999998775422 3333 4665

>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.45  E-value=0.27  Score=44.12  Aligned_cols=37  Identities=32%  Similarity=0.366  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ++.||++-|.|. |.||+.+++.|...|++|++.++..
T Consensus         2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~   39 (235)
T PRK06550          2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQD   39 (235)
T ss_pred             CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCc
Confidence            478899999986 8899999999999999999998764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=92.41  E-value=0.22  Score=50.62  Aligned_cols=70  Identities=23%  Similarity=0.255  Sum_probs=54.0

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH----------------------HHHHhcCcc--------
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV----------------------EDAAKLNIA--------  142 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~----------------------~~a~~~gv~--------  142 (333)
                      .....|++|+|||.|.-|...|..|...|+.|++|++....                      +..++.|++        
T Consensus       118 ~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG  197 (457)
T COG0493         118 PGSRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVG  197 (457)
T ss_pred             CCCCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence            34567899999999999999999999999999998743210                      122344543        


Q ss_pred             -ccChhhhccCCCEEEEecCC
Q psy6348         143 -SLGLEDIWPLADYITVHTPL  162 (333)
Q Consensus       143 -~~~l~ell~~aDvV~l~~P~  162 (333)
                       ..++++++++.|.|++++..
T Consensus       198 ~~it~~~L~~e~Dav~l~~G~  218 (457)
T COG0493         198 RDITLEELLKEYDAVFLATGA  218 (457)
T ss_pred             CcCCHHHHHHhhCEEEEeccc
Confidence             23789999999999999753

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=92.40  E-value=0.57  Score=44.76  Aligned_cols=45  Identities=24%  Similarity=0.251  Sum_probs=36.0

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHh-cCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAK-LNI  141 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~-~gv  141 (333)
                      .|.++.|.|. |.+|+.+++.++.+|.+|++.++.. ..+.+++ +|+
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa  198 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF  198 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC
Confidence            5889999998 9999999999999999999887654 2233444 554

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=92.33  E-value=0.4  Score=43.98  Aligned_cols=38  Identities=29%  Similarity=0.316  Sum_probs=33.3

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ....++++.|+|. |.||+.+++.|...|++|++..+..
T Consensus        13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~   51 (251)
T PLN00141         13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDV   51 (251)
T ss_pred             ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCH
Confidence            4467899999995 9999999999999999999887754

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=92.31  E-value=0.59  Score=42.56  Aligned_cols=37  Identities=27%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+.||++.|.|. |.||+.+|+.|...|++|++.++..
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~   44 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDP   44 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999996 9999999999999999999998864

>PLN02827 Alcohol dehydrogenase-like

Probab=92.30  E-value=0.64  Score=45.60  Aligned_cols=45  Identities=29%  Similarity=0.509  Sum_probs=35.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.++.|.|.|.+|...++.++.+|. .|++.++.. ..+.++++|+
T Consensus       193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa  239 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV  239 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence            58999999999999999999999998 488888654 3344555554

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=92.22  E-value=4.8  Score=41.87  Aligned_cols=191  Identities=14%  Similarity=0.101  Sum_probs=117.9

Q ss_pred             CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhh----
Q psy6348          44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA----  119 (333)
Q Consensus        44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~----  119 (333)
                      ..|+++|+.-   ..+|-.+++-+++..|-                  .|..|...++.|.|.|..|..+|+.+..    
T Consensus       264 ~~i~~FnDDi---QGTaaV~lAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~  322 (559)
T PTZ00317        264 NKYRCFNDDI---QGTGAVIAAGFLNALKL------------------SGVPPEEQRIVFFGAGSAAIGVANNIADLAAE  322 (559)
T ss_pred             cCCCEecccc---hhHHHHHHHHHHHHHHH------------------hCCChhhcEEEEECCCHHHHHHHHHHHHHHHH
Confidence            4599999853   45666788888888772                  3567888999999999999999988873    


Q ss_pred             CCC-------EEEEEcCCC----------CH---HHHHhc-Ccc---ccChhhhccCC--CEEEEecCCchhhHhhccHH
Q psy6348         120 FGM-------KVIGFDPMV----------SV---EDAAKL-NIA---SLGLEDIWPLA--DYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus       120 ~G~-------~V~~~d~~~----------~~---~~a~~~-gv~---~~~l~ell~~a--DvV~l~~P~t~~t~~li~~~  173 (333)
                      .|.       +++.+|+.-          ..   ..++.. ...   ..+|.|+++.+  |+++=+-    ...+.|.++
T Consensus       323 ~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S----~~~g~Ft~e  398 (559)
T PTZ00317        323 YGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLS----GVGGVFTEE  398 (559)
T ss_pred             cCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEec----CCCCCCCHH
Confidence            687       788888542          11   111111 011   34899999998  9888642    235789999


Q ss_pred             HHhccCC---CcEEEEccCCcccchHhHHhhhh--cCC-ceEEEeccCCCCCCC-CccchhhcCCCcEEEccCCCCC---
Q psy6348         174 VLKKCKK---GVRVVNVARGGIVDENALLDSLK--CGH-CGGAALDVFCEEPPK-SEQTFELIKHPKVIVTPHLGAS---  243 (333)
Q Consensus       174 ~~~~mk~---gailIN~aRg~~vd~~aL~~aL~--~g~-i~gaalDV~~~EP~~-~~~~~~L~~~pnvi~TPHi~~~---  243 (333)
                      .++.|.+   ..+|.=.|....-.|-.-.+|.+  .|+ |.+.+.-.   +|.. +.....-=+.-|+++-|=+|=-   
T Consensus       399 vv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf---~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~  475 (559)
T PTZ00317        399 VVKTMASNVERPIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPF---PPVTLNGKTIQPSQGNNLYVFPGVGLGCAI  475 (559)
T ss_pred             HHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCC---CCcccCCeeeccCcCcceeeccchhhhhHh
Confidence            9999984   89999998876433333333333  354 43333321   1110 0000111256799999988621   


Q ss_pred             --cHHHHHHHHHHHHHHHHHh
Q psy6348         244 --TKEAQIRVAVEIAEQFIAL  262 (333)
Q Consensus       244 --t~ea~~~~~~~~~~~i~~~  262 (333)
                        ...--+.|...+++.+.++
T Consensus       476 ~~a~~Itd~m~~aAA~aLA~~  496 (559)
T PTZ00317        476 AQPSYIPDEMLIAAAASLATL  496 (559)
T ss_pred             hcccCCCHHHHHHHHHHHHhh
Confidence              1112234555555555554

>KOG4230|consensus

Probab=92.19  E-value=2.4  Score=44.15  Aligned_cols=178  Identities=21%  Similarity=0.193  Sum_probs=109.8

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +..+.||+..|+|=-. +|..++..|+.....|..+...-            .++.|.+.++|+|+.++--    .+++.
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSKT------------~~lae~v~~ADIvIvAiG~----PefVK  220 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSKT------------RNLAEKVSRADIVIVAIGQ----PEFVK  220 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCCC------------ccHHHHhccCCEEEEEcCC----cceee
Confidence            4567899999999754 69999999998889998876521            2577888999999999752    33443


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHHHHHH
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRV  251 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~~~~  251 (333)
                      .+   .+|||+++|+|+-..+-|...     ++|.-  ..=||..++-..      .    -=.+||--||.-.=....+
T Consensus       221 gd---WiKpGavVIDvGINyvpD~~K-----ksg~k--lvGDVdfe~Ake------v----as~ITPVPGGVGPMTVAML  280 (935)
T KOG4230|consen  221 GD---WIKPGAVVIDVGINYVPDPSK-----KSGFK--LVGDVDFESAKE------V----ASFITPVPGGVGPMTVAML  280 (935)
T ss_pred             cc---cccCCcEEEEccccccCCCCC-----cccce--EeeecchHhhhh------h----hhccccCCCCcchHHHHHH
Confidence            33   479999999998766555432     33432  355775444311      1    1268998888766555555


Q ss_pred             HHHHHHHHHHhHcC-CCCCCCCCCcccc--c---ccCcccCCCCCchHHHHHHHhHHHHHH
Q psy6348         252 AVEIAEQFIALANT-NPQYTSIQGVLNA--P---ALAASRNPENTSWISLARSLGKISSQL  306 (333)
Q Consensus       252 ~~~~~~~i~~~~~~-~~~~~~~~~~vn~--~---~~~~~~~~~~~~~~~l~~~~g~~~~~~  306 (333)
                      .+.+.+.-.++..+ ...+....+..+.  |   .++.+...+-++--.||+.||-....+
T Consensus       281 mqNtveaAKR~r~es~~~~~i~~~pl~l~tpvpsdidisrsq~pk~i~~la~e~gi~s~el  341 (935)
T KOG4230|consen  281 MQNTVEAAKRQREESKKKRKIDLLPLKLKTPVPSDIDISRSQEPKLIGQLAKELGIYSHEL  341 (935)
T ss_pred             HHHHHHHHHHHHHhccccCcCCCCccccCCCCCcccchhhccCcchHHHHHHHhchhhHHH
Confidence            55555555553222 2121122233332  1   222333334455567898888655543

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=92.16  E-value=0.25  Score=48.19  Aligned_cols=84  Identities=13%  Similarity=0.150  Sum_probs=49.6

Q ss_pred             EEEEEe-cChHHHHHHHHHhhCCCEE---EEEcCCCCH-HHHHhcCcc--ccChh-hhccCCCEEEEecCCchhhHhhcc
Q psy6348         100 TLAVLG-LGRIGREVALRMQAFGMKV---IGFDPMVSV-EDAAKLNIA--SLGLE-DIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus       100 tvGIIG-lG~IG~~vA~~l~~~G~~V---~~~d~~~~~-~~a~~~gv~--~~~l~-ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +|+||| -|.+|+.+.+.|...++.+   ..+.+..+. ......|..  ..+++ +.++++|++++|+|.. .++.+. 
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a-   78 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFA-   78 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHH-
Confidence            589999 5999999999998866653   233232211 111111221  11222 3458899999999843 233221 


Q ss_pred             HHHHhccCCCcEEEEcc
Q psy6348         172 AEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       172 ~~~~~~mk~gailIN~a  188 (333)
                      ..   ..+.|+.+|+.+
T Consensus        79 ~~---~~~~G~~VID~s   92 (339)
T TIGR01296        79 PK---AAKCGAIVIDNT   92 (339)
T ss_pred             HH---HHHCCCEEEECC
Confidence            22   235788999887

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PLN02686 cinnamoyl-CoA reductase

Probab=92.15  E-value=0.55  Score=45.97  Aligned_cols=36  Identities=17%  Similarity=0.119  Sum_probs=31.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      .-.+|+|.|.|. |-||+.+++.|...|++|++..+.
T Consensus        50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~   86 (367)
T PLN02686         50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT   86 (367)
T ss_pred             CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence            467899999997 999999999999999999886554

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=92.14  E-value=0.19  Score=40.98  Aligned_cols=77  Identities=22%  Similarity=0.180  Sum_probs=55.4

Q ss_pred             HHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc----------Chhhhcc--CCCEEEEecCCchhhHhhccHHHH
Q psy6348         109 IGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL----------GLEDIWP--LADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus       109 IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~----------~l~ell~--~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      ||...++.++.+|.+|++.++.. ..+.++++|...+          .+.++..  ..|+|+-|++. +.    .-...+
T Consensus         2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-~~----~~~~~~   76 (130)
T PF00107_consen    2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-GD----TLQEAI   76 (130)
T ss_dssp             HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-HH----HHHHHH
T ss_pred             hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCc-HH----HHHHHH
Confidence            78888999999999999999876 4566788886432          1223444  48999998872 22    225566


Q ss_pred             hccCCCcEEEEccCC
Q psy6348         176 KKCKKGVRVVNVARG  190 (333)
Q Consensus       176 ~~mk~gailIN~aRg  190 (333)
                      ..++++..++.++-.
T Consensus        77 ~~l~~~G~~v~vg~~   91 (130)
T PF00107_consen   77 KLLRPGGRIVVVGVY   91 (130)
T ss_dssp             HHEEEEEEEEEESST
T ss_pred             HHhccCCEEEEEEcc
Confidence            778999898888554

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>KOG2741|consensus

Probab=92.07  E-value=0.43  Score=46.47  Aligned_cols=69  Identities=22%  Similarity=0.345  Sum_probs=50.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhC---CCEEEE-EcCCCC--HHHHHhcCc--cc--cChhhhccCC--CEEEEecCCchhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF---GMKVIG-FDPMVS--VEDAAKLNI--AS--LGLEDIWPLA--DYITVHTPLIPQT  166 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~-~d~~~~--~~~a~~~gv--~~--~~l~ell~~a--DvV~l~~P~t~~t  166 (333)
                      -+.||+|+|+|++-.++.+...   +++|++ +||+..  .+.+++.++  ..  -+.|||++..  |+|.+..|...+.
T Consensus         7 ir~Gi~g~g~ia~~f~~al~~~p~s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~   86 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRALHTLPESNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHY   86 (351)
T ss_pred             eEEEEeehhHHHHHHHHHhccCcccCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHH
Confidence            3789999999999999988753   567665 577553  345566676  22  3899999875  9999999865543


Q ss_pred             H
Q psy6348         167 K  167 (333)
Q Consensus       167 ~  167 (333)
                      +
T Consensus        87 e   87 (351)
T KOG2741|consen   87 E   87 (351)
T ss_pred             H
Confidence            3

>PRK08328 hypothetical protein; Provisional

Probab=92.04  E-value=0.23  Score=45.81  Aligned_cols=37  Identities=30%  Similarity=0.514  Sum_probs=32.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPM  130 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~  130 (333)
                      ..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            45889999999999999999999999997 67778754

>PRK10083 putative oxidoreductase; Provisional

Probab=92.01  E-value=0.81  Score=43.49  Aligned_cols=45  Identities=18%  Similarity=0.255  Sum_probs=34.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh-CCCE-EEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA-FGMK-VIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~-~G~~-V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.++.|.|.|.+|..+++.+++ +|.+ |++.++.. ..+.++++|+
T Consensus       160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga  207 (339)
T PRK10083        160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGA  207 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCC
Confidence            57899999999999999999986 6986 77777754 3344455665

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.97  E-value=0.74  Score=41.43  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ++.|+++.|+|. |.||+.+++.+.+.|++|+..++..
T Consensus         2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~   39 (253)
T PRK08217          2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQ   39 (253)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            367999999998 9999999999999999999998864

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=91.97  E-value=0.86  Score=42.84  Aligned_cols=45  Identities=18%  Similarity=0.230  Sum_probs=35.8

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.++.|+|. |.+|..+++.+++.|++|++.++.. ..+.++++|+
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~  192 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGA  192 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCC
Confidence            3679999999 9999999999999999999887755 2334444554

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=91.96  E-value=0.85  Score=43.52  Aligned_cols=88  Identities=24%  Similarity=0.242  Sum_probs=56.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-cChh----------hhcc-CCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-LGLE----------DIWP-LADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~~l~----------ell~-~aDvV~l~~P~t  163 (333)
                      .|+++.|.|.|.+|+.+++.++++|.+|++.++.. ..+.++++|+.. .+..          .+.. ..|+++-++.. 
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~d~vi~~~g~-  243 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLELARELGAVATVNASEVEDVAAAVRDLTGGGAHVSVDALGI-  243 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHhCCCEEEccccchhHHHHHHHHhCCCCCEEEEcCCC-
Confidence            57899999999999999999999999999887654 234445556521 1111          1111 46777665541 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      ..    .-...+..|+++..+++++.
T Consensus       244 ~~----~~~~~~~~l~~~g~~i~~g~  265 (345)
T cd08260         244 PE----TCRNSVASLRKRGRHVQVGL  265 (345)
T ss_pred             HH----HHHHHHHHhhcCCEEEEeCC
Confidence            11    11344566777777777654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase

Probab=91.94  E-value=0.38  Score=47.66  Aligned_cols=41  Identities=24%  Similarity=0.323  Sum_probs=35.7

Q ss_pred             CCccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          91 YTGTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        91 ~~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +.+....++++.|+|. |.||+.+++.|...|++|+++++..
T Consensus        53 ~~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~   94 (390)
T PLN02657         53 FRSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREK   94 (390)
T ss_pred             ccccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEech
Confidence            3456678899999997 9999999999999999999998765

>PLN02427 UDP-apiose/xylose synthase

Probab=91.90  E-value=0.41  Score=46.91  Aligned_cols=69  Identities=20%  Similarity=0.252  Sum_probs=48.3

Q ss_pred             CccccCCCEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCCCCH-HHHHhc-------Ccccc--------ChhhhccCC
Q psy6348          92 TGTELYGKTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPMVSV-EDAAKL-------NIASL--------GLEDIWPLA  153 (333)
Q Consensus        92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~-~~a~~~-------gv~~~--------~l~ell~~a  153 (333)
                      .|..++.++|.|.|. |-||+.+++.|... |++|+++|+.... ......       +++++        .++++++++
T Consensus         8 ~~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~   87 (386)
T PLN02427          8 DGKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMA   87 (386)
T ss_pred             CCCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcC
Confidence            466788889999995 99999999999987 5999999975422 111111       22221        355678889


Q ss_pred             CEEEEec
Q psy6348         154 DYITVHT  160 (333)
Q Consensus       154 DvV~l~~  160 (333)
                      |+|+-+.
T Consensus        88 d~ViHlA   94 (386)
T PLN02427         88 DLTINLA   94 (386)
T ss_pred             CEEEEcc
Confidence            9877554

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=91.90  E-value=0.57  Score=42.23  Aligned_cols=37  Identities=35%  Similarity=0.396  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ++.++++.|+|. |.||+.+++.|...|++|++.++..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~   39 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNE   39 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence            467899999997 8999999999999999999999865

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=91.89  E-value=0.49  Score=47.98  Aligned_cols=67  Identities=25%  Similarity=0.225  Sum_probs=49.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC----------------------HHHHHhcCcccc---------
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS----------------------VEDAAKLNIASL---------  144 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~----------------------~~~a~~~gv~~~---------  144 (333)
                      -.+++|.|||.|..|...|..|+..|++|+.|++...                      .+...+.|++..         
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~~  220 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKLEKEVIDRRIELMEAEGIEFRTNVEVGKDI  220 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccCCHHHHHHHHHHHHhCCcEEEeCCEECCcC
Confidence            4688999999999999999999999999999986421                      122344565421         


Q ss_pred             ChhhhccCCCEEEEecCC
Q psy6348         145 GLEDIWPLADYITVHTPL  162 (333)
Q Consensus       145 ~l~ell~~aDvV~l~~P~  162 (333)
                      +.+++....|.|++++-.
T Consensus       221 ~~~~~~~~~d~vvlAtGa  238 (471)
T PRK12810        221 TAEELLAEYDAVFLGTGA  238 (471)
T ss_pred             CHHHHHhhCCEEEEecCC
Confidence            234555678999998754

>PLN02214 cinnamoyl-CoA reductase

Probab=91.88  E-value=0.53  Score=45.49  Aligned_cols=67  Identities=19%  Similarity=0.111  Sum_probs=48.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH-H-H-HHhc-----Cccc--------cChhhhccCCCEEE
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV-E-D-AAKL-----NIAS--------LGLEDIWPLADYIT  157 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~-~-a~~~-----gv~~--------~~l~ell~~aDvV~  157 (333)
                      .+.++++.|.|. |.||+.+++.|...|++|.+.++..+. . . ....     .++.        .+++++++.+|+|+
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vi   86 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVF   86 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEE
Confidence            367899999998 999999999999999999998875432 1 0 1111     1221        13567788899887


Q ss_pred             EecC
Q psy6348         158 VHTP  161 (333)
Q Consensus       158 l~~P  161 (333)
                      -+..
T Consensus        87 h~A~   90 (342)
T PLN02214         87 HTAS   90 (342)
T ss_pred             EecC
Confidence            7764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	333
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		3e-93
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		1e-65
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		1e-65
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		4e-48
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		7e-47
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		1e-36
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		1e-36
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		3e-36
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		1e-35
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-34
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-33
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		2e-33
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		1e-32
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		1e-32
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		1e-32
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		1e-32
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-32
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		1e-31
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		3e-29
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		4e-29
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		6e-29
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		4e-28
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-26
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		1e-26
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		2e-26
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		3e-26
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		4e-26
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		4e-26
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		7e-26
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		7e-26
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		9e-26
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		1e-25
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		2e-25
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		4e-25
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		1e-24
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		5e-24
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-23
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		3e-23
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		6e-23
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		3e-22
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		4e-22
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		5e-22
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		6e-22
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		6e-22
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-21
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		2e-21
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		5e-21
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		1e-20
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-20
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		1e-20
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		1e-19
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		3e-19
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		1e-18
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-16
3kbo_A	315	2.14 Angstrom Crystal Structure Of Putative Oxidore		7e-14
3gvx_A	290	Crystal Structure Of Glycerate Dehydrogenase Relate		3e-13
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		3e-13
4hy3_A	365	Crystal Structure Of A Phosphoglycerate Oxidoreduct		8e-10
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		2e-04

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score =  338 bits (866), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 164/261 (62%), Positives = 198/261 (75%), Gaps = 4/261 (1%)
Query: 3   DGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           +GL+VRS TKVTA+V+ A+  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA E
Sbjct: 69  EGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAE 128
Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           LTC +I  L+R +PQ   S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+FG
Sbjct: 129 LTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFG 188
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           MK IG+DP++S E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CKKG
Sbjct: 189 MKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKG 248
Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           VRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PHLG
Sbjct: 249 VRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRA---LVDHENVISCPHLG 305
Query: 242 ASTKEAQIRVAVEIAEQFIAL 262
           ASTKEAQ R   EIA QF+ +
Sbjct: 306 ASTKEAQSRCGEEIAVQFVDM 326

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score =  246 bits (629), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/301 (47%), Positives = 186/301 (61%), Gaps = 14/301 (4%)
Query: 3   DGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           D L+VRS T V AEVL A+  L++V RAG G+DN+D+ AAT +GVLV+NAP  N  SA E
Sbjct: 46  DALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAE 105
Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
              +L+ A SR +P    SL+E  W R  ++GTE++GKT+ V+GLGRIG+ VA R+ AFG
Sbjct: 106 HALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFG 165
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             V+ +DP VS   AA+L I  L L+D+   AD+I+VH P  P+T  LI+ E L K K G
Sbjct: 166 AYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPG 225
Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           V +VN ARGG+VDE AL D++  GH   A LDVF  EP      FEL    +V+VTPHLG
Sbjct: 226 VIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFEL---AQVVVTPHLG 282
Query: 242 ASTKEAQIRVAVEIAEQF-IALANTN-PQYTSIQGVLNAPALAASRNPENTSWISLARSL 299
           AST EAQ R   ++AE   +ALA    P   ++ G           N E   W+ L R L
Sbjct: 283 ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGG--------GVVNEEVAPWLDLVRKL 334
Query: 300 G 300
           G
Sbjct: 335 G 335

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score =  246 bits (629), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/301 (47%), Positives = 186/301 (61%), Gaps = 14/301 (4%)
Query: 3   DGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           D L+VRS T V AEVL A+  L++V RAG G+DN+D+ AAT +GVLV+NAP  N  SA E
Sbjct: 45  DALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAE 104
Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
              +L+ A SR +P    SL+E  W R  ++GTE++GKT+ V+GLGRIG+ VA R+ AFG
Sbjct: 105 HALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFG 164
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
             V+ +DP VS   AA+L I  L L+D+   AD+I+VH P  P+T  LI+ E L K K G
Sbjct: 165 AYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPG 224
Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG 241
           V +VN ARGG+VDE AL D++  GH   A LDVF  EP      FEL    +V+VTPHLG
Sbjct: 225 VIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFEL---AQVVVTPHLG 281
Query: 242 ASTKEAQIRVAVEIAEQF-IALANTN-PQYTSIQGVLNAPALAASRNPENTSWISLARSL 299
           AST EAQ R   ++AE   +ALA    P   ++ G           N E   W+ L R L
Sbjct: 282 ASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGG--------GVVNEEVAPWLDLVRKL 333
Query: 300 G 300
           G
Sbjct: 334 G 334

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  188 bits (477), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/262 (42%), Positives = 163/262 (62%), Gaps = 5/262 (1%)
Query: 3   DGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           + ++VRS  KVT  V++ A  L+V+ RAG G+DNID+ AA  KG+ V+NAP  +  S  E
Sbjct: 46  EAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAE 105
Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
           L   L+ +++R +    + ++EG W +K   G EL GKT+ ++G GRIG +VA    A G
Sbjct: 106 LAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALG 165
Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKG 181
           M ++ +DP  + E A ++N   + LE +   +D +T+H PL+  T +LIN E LK  KK 
Sbjct: 166 MNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKT 225
Query: 182 VRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHL 240
             ++N +RG +VD NAL+ +LK G   GA LDVF EEP PK      L K   V++TPH+
Sbjct: 226 AILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHP---LTKFDNVVLTPHI 282
Query: 241 GASTKEAQIRVAVEIAEQFIAL 262
           GAST EAQ R  VE+AE+ + +
Sbjct: 283 GASTVEAQERAGVEVAEKVVKI 304

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score =  184 bits (467), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 105/252 (41%), Positives = 149/252 (59%), Gaps = 3/252 (1%)
Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           YD +VVRS TKVT +V++    L+++ RAG G+DNID   A ++ + V+ APG +  SA 
Sbjct: 47  YDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAV 106
Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELT  L+ A +R +       K G +  K   G EL GKT+ ++G GRIG +V +   A 
Sbjct: 107 ELTIGLMIAAARKMYTSMALAKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAM 164
Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GMKV+ +D +   E A K+N  ++ LE++   +D I++H  +    K +I+    +  K 
Sbjct: 165 GMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD 224
Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
            V +VN +R   V+  ALLD +K G     A DVF  EPPK E   EL+KH +VIVT H+
Sbjct: 225 NVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHI 284
Query: 241 GASTKEAQIRVA 252
           GA TKEAQ RVA
Sbjct: 285 GAQTKEAQKRVA 296

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 21/301 (6%)
Query: 7   VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
           +RS T +T +V+ A+  L  +G    G + +DL AA ++G+ V NAP  N  S  EL   
Sbjct: 59  LRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 118
Query: 66  LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
            +  L R VP+       G W++      E  GK L ++G G IG ++ +  ++ GM V 
Sbjct: 119 ELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVY 178
Query: 126 GFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
            +D    +E+   L  A+    L D+  ++D +++H P  P TKN++ A+ +   K G  
Sbjct: 179 FYD----IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSL 234
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
           ++N +RG +VD  AL D+L   H  GAA+DVF  EP  +   F   L +   V++TPH+G
Sbjct: 235 LINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
            ST+EAQ  + +E+A + I  ++            N   L+A   PE +  + + R L  
Sbjct: 295 GSTQEAQENIGLEVAGKLIKYSD------------NGSTLSAVNFPEVSLPLHVGRRLMH 342
Query: 302 I 302
           I
Sbjct: 343 I 343

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 21/301 (6%)
Query: 7   VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
           +RS T +T +V+ A+  L  +G    G + +DL AA ++G+ V NAP  N  S  EL   
Sbjct: 59  LRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 118
Query: 66  LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
            +  L R VP+       G W++      E  GK L ++G G IG ++ +  ++ GM V 
Sbjct: 119 ELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVY 178
Query: 126 GFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
            +D    +E+   L  A+    L D+  ++D +++H P  P TKN++ A+ +   K G  
Sbjct: 179 FYD----IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSL 234
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
           ++N +RG +VD  AL D+L   H  GAA+DVF  EP  +   F   L +   V++TPH+G
Sbjct: 235 LINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGK 301
            ST+EAQ  + +E+A + I  ++            N   L+A   PE +  + + R L  
Sbjct: 295 GSTQEAQENIGLEVAGKLIKYSD------------NGSTLSAVNFPEVSLPLHVVRRLMH 342
Query: 302 I 302
           I
Sbjct: 343 I 343

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score =  148 bits (374), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 148/292 (50%), Gaps = 9/292 (3%)
Query: 7   VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
           +RS T++T E+  A+N L  VG    G + ++L AA ++G+ V NAP  N  S  EL   
Sbjct: 64  IRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIG 123
Query: 66  LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
            I  L R +     S   G W++      E+ GKTL ++G G IG +V    ++ GM V 
Sbjct: 124 EIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVR 183
Query: 126 GFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
            +D    ++       AS  L+++   +D +++H P    T  LI    L+K KKG  ++
Sbjct: 184 YYDTSDKLQYGNVKPAAS--LDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLI 241
Query: 186 NVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLGAS 243
           N ARG  VD  AL   L+ GH  GAA+DVF  EP  + + F   L     VI+TPH+G S
Sbjct: 242 NNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGS 301
Query: 244 TKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISL 295
           T+EAQ R+  E+  + +  ++      S  G +N P +     P  T ++ +
Sbjct: 302 TEEAQERIGTEVTRKLVEYSDVG----STVGAVNFPQVQLPPRPTGTRFMHV 349

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score =  146 bits (369), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 145/271 (53%), Gaps = 9/271 (3%)
Query: 7   VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
           +RS T +T +V+ A+  L  +G    G + +DL AA ++G+ V NAP  N  S  EL   
Sbjct: 58  LRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 117
Query: 66  LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
            +  L R VP+       G W++      E  GK L ++G G IG ++ +  ++ GM V 
Sbjct: 118 ELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVY 177
Query: 126 GFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
            +D    +E+   L  A+    L D+  ++D +++H P  P TKN++ A+ +   K G  
Sbjct: 178 FYD----IENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSL 233
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
           ++N +RG +VD  AL D+L   H  GAA+DVF  EP  +   F   L +   V++TPH+G
Sbjct: 234 LINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIG 293
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSI 272
            ST+EAQ  + +E+A + I  ++     +++
Sbjct: 294 GSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 324

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/267 (32%), Positives = 144/267 (53%), Gaps = 10/267 (3%)
Query: 1   KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           ++DG++V   TK+T EVL+ A  L+V+     G DNIDL  AT++G+ V    G    + 
Sbjct: 42  RFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAV 101
Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDR--KLYTGTE----LYGKTLAVLGLGRIGREV 113
            E T  LI  L R +    + ++ G+W+   K++TG +    LYGK + +LG+G IG+ +
Sbjct: 102 AEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAI 161
Query: 114 ALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173
           A R+  FG+K+  +     V    +L    + ++++   +D + +  PL   T ++IN E
Sbjct: 162 ARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEE 221
Query: 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK 233
            +KK  +G  +VN+ RG +VDE A+ +++K G   G A DVF +EP +  + F+     +
Sbjct: 222 RVKKL-EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKY--EWE 278
Query: 234 VIVTPHLGASTKEAQIRVAVEIAEQFI 260
            ++TPH      EAQ  V     E  +
Sbjct: 279 TVLTPHYAGLALEAQEDVGFRAVENLL 305

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/268 (35%), Positives = 156/268 (58%), Gaps = 11/268 (4%)
Query: 3   DGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           D LV     ++  EV + A  L++V     G DNID+  AT++G+ V N P     +  +
Sbjct: 47  DALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATAD 106
Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDR-------KLYTGTELYGKTLAVLGLGRIGREVA 114
           L  +L+ A +R+V +G + ++ G+W +       K + G ++YGKT+ ++GLGRIG+ +A
Sbjct: 107 LAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIA 166
Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
            R + F M+++ +      E   +LN     LED+   +D++ +  PL  +T +LIN E 
Sbjct: 167 KRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEER 226
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           LK  KK   ++N+ARG +VD NAL+ +LK G   GA LDVF EEP  +E+ F+L     V
Sbjct: 227 LKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKL---DNV 283
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIAL 262
           ++TPH+G+++  A+  +A  +A+  IA 
Sbjct: 284 VLTPHIGSASFGAREGMAELVAKNLIAF 311

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/271 (32%), Positives = 141/271 (52%), Gaps = 9/271 (3%)
Query: 7   VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
           +RS T +T +V+ A+  L  +G    G + +DL AA ++G+ V NAP  N  S  EL   
Sbjct: 59  LRSRTHLTEDVINAAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 118
Query: 66  LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
            +  L R VP+       G W++      E  GK L ++G G IG ++ +  ++ G  V 
Sbjct: 119 ELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVY 178
Query: 126 GFDPMVSVEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
            +D    +E+   L  A+    L D+   +D +++H P  P TKN   A+ +   K G  
Sbjct: 179 FYD----IENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSL 234
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
           ++N +RG +VD  AL D+L   H  GAA+DVF  EP  +   F   L +   V++TPH+G
Sbjct: 235 LINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSI 272
            ST+EAQ  + +E+A + I  ++     +++
Sbjct: 295 GSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 325

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/271 (31%), Positives = 140/271 (51%), Gaps = 9/271 (3%)
Query: 7   VRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS 65
           +RS T +T +V+ A+  L  +G    G + +DL AA ++G+ V NAP  N  S  EL   
Sbjct: 53  LRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIG 112
Query: 66  LISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVI 125
            +  L R VP+       G  ++      E  GK L ++G G IG ++ +  ++ G  V 
Sbjct: 113 ELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGXYVY 172
Query: 126 GFDPMVSVEDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR 183
            +D    +E+   L  A+    L D+   +D +++H P  P TKN   A+ +   K G  
Sbjct: 173 FYD----IENKLPLGNATQVQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSL 228
Query: 184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTPHLG 241
           ++N +RG +VD  AL D+L   H  GAA+DVF  EP  +   F   L +   V++TPH+G
Sbjct: 229 LINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIG 288
Query: 242 ASTKEAQIRVAVEIAEQFIALANTNPQYTSI 272
            ST+EAQ  + +E+A + I  ++     +++
Sbjct: 289 GSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 319

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 146/271 (53%), Gaps = 12/271 (4%)
Query: 23  LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
           L+++ R G+G DNID+ +A   G+ V N P  +     + T   I  L R      Q+L+
Sbjct: 89  LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 83  EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--V 133
           EG      +  R++ +G   + G+TL ++GLGR+G+ VALR +AFG  V+ +DP +S  +
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
           E A  L   S  L+D+   +D +T+H  L     +LIN   +K+ ++G  +VN ARGG+V
Sbjct: 209 ERALGLQRVST-LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 267
Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
           DE AL  +LK G   GAALDV   EP    Q   L   P +I TPH    +++A I +  
Sbjct: 268 DEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIEMRE 326
Query: 254 EIAEQFIALANTNPQYTSIQGVLNAPALAAS 284
           E A + I  A T     S++  +N   L A+
Sbjct: 327 EAARE-IRRAITGRIPDSLKNCVNKDHLTAA 356

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 97/271 (35%), Positives = 146/271 (53%), Gaps = 12/271 (4%)
Query: 23  LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
           L+++ R G+G DNID+ +A   G+ V N P  +     + T   I  L R      Q+L+
Sbjct: 89  LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 83  EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--V 133
           EG      +  R++ +G   + G+TL ++GLGR+G+ VALR +AFG  V+ +DP +S  +
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
           E A  L   S  L+D+   +D +T+H  L     +LIN   +K+ ++G  +VN ARGG+V
Sbjct: 209 ERALGLQRVST-LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 267
Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
           DE AL  +LK G   GAALDV   EP    Q   L   P +I TPH    +++A I +  
Sbjct: 268 DEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIEMRE 326
Query: 254 EIAEQFIALANTNPQYTSIQGVLNAPALAAS 284
           E A + I  A T     S++  +N   L A+
Sbjct: 327 EAARE-IRRAITGRIPDSLKNCVNKDHLTAA 356

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/245 (37%), Positives = 135/245 (55%), Gaps = 11/245 (4%)
Query: 23  LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
           L+++ R G+G DNID+ +A   G+ V N P  +     + T   I  L R      Q+L+
Sbjct: 86  LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALR 145
Query: 83  EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--V 133
           EG      +  R++ +G   + G+TL ++GLGR+G+ VALR +AFG  V+ +DP +S  V
Sbjct: 146 EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV 205
Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
           E A  L   S  L+D+   +D +T+H  L     +LIN   +K+ ++G  +VN ARGG+V
Sbjct: 206 ERALGLQRVST-LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 264
Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
           DE AL  +LK G   GAALDV   EP    Q   L   P +I TPH    +++A I +  
Sbjct: 265 DEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIEMRE 323
Query: 254 EIAEQ 258
           E A +
Sbjct: 324 EAARE 328

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/268 (35%), Positives = 154/268 (57%), Gaps = 11/268 (4%)
Query: 3   DGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           D LV     ++  EV + A  L++V     G DNID+  AT++G+ V N P     +  +
Sbjct: 47  DALVTXLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATAD 106
Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDR-------KLYTGTELYGKTLAVLGLGRIGREVA 114
           L  +L+ A +R+V +G + ++ G+W +       K + G ++YGKT+ ++GLGRIG+ +A
Sbjct: 107 LAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIA 166
Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
            R + F  +++ +      E   +LN     LED+   +D++ +  PL  +T +LIN E 
Sbjct: 167 KRAKGFNXRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEER 226
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           LK  KK   ++N+ARG +VD NAL+ +LK G   GA LDVF EEP  +E+ F+L     V
Sbjct: 227 LKLXKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKL---DNV 283
Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIAL 262
           ++TPH+G+++  A+   A  +A+  IA 
Sbjct: 284 VLTPHIGSASFGAREGXAELVAKNLIAF 311

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 96/271 (35%), Positives = 145/271 (53%), Gaps = 12/271 (4%)
Query: 23  LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
           L+++ R G+G DNID+ +A   G+ V N P  +     + T   I  L R      Q+L+
Sbjct: 89  LRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALR 148
Query: 83  EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--V 133
           EG      +  R++ +G   + G+TL ++GL R+G+ VALR +AFG  V+ +DP +S  +
Sbjct: 149 EGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVALRAKAFGFNVLFYDPYLSDGI 208
Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
           E A  L   S  L+D+   +D +T+H  L     +LIN   +K+ ++G  +VN ARGG+V
Sbjct: 209 ERALGLQRVST-LQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLV 267
Query: 194 DENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
           DE AL  +LK G   GAALDV   EP    Q   L   P +I TPH    +++A I +  
Sbjct: 268 DEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAPNLICTPHAAWYSEQASIEMRE 326
Query: 254 EIAEQFIALANTNPQYTSIQGVLNAPALAAS 284
           E A + I  A T     S++  +N   L A+
Sbjct: 327 EAARE-IRRAITGRIPDSLKNCVNKDHLTAA 356

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score =  125 bits (314), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 29  AGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDR 88
           AG G D+IDL AA   G+ V    G N +S  E     I  L RN   G   + +G+W+ 
Sbjct: 99  AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 158
Query: 89  K--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-----PMVSVEDAAKLNI 141
               Y   +L GKT+  +G GRIG+ +  R++ FG  ++  D     P +  E  AK   
Sbjct: 159 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF-- 216
Query: 142 ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDS 201
               L ++ P  D I ++ PL  +T+ + N E++ K KKGV +VN ARG I++  A++D+
Sbjct: 217 -VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDA 275
Query: 202 LKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
           ++ GH GG + DV+  +P   +  +  +  P   +TPH   +T +AQ+R A
Sbjct: 276 VESGHIGGYSGDVWDPQPAPKDHPWRYM--PNQAMTPHTSGTTIDAQLRYA 324

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score =  125 bits (313), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 12/231 (5%)
Query: 29  AGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDR 88
           AG G D+IDL AA   G+ V    G N +S  E     I  L RN   G   + +G+W+ 
Sbjct: 93  AGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNV 152
Query: 89  K--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-----PMVSVEDAAKLNI 141
               Y   +L GKT+  +G GRIG+ +  R++ FG  ++  D     P +  E  AK   
Sbjct: 153 AGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKF-- 210
Query: 142 ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDS 201
               L ++ P  D I ++ PL  +T+ + N E++ K KKGV +VN ARG I++  A++D+
Sbjct: 211 -VEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDA 269
Query: 202 LKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
           ++ GH GG + DV+  +P   +  +  +  P   +TPH   +T +AQ+R A
Sbjct: 270 VESGHIGGYSGDVWDPQPAPKDHPWRYM--PNQAMTPHTSGTTIDAQLRYA 318

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score =  124 bits (312), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 82/237 (34%), Positives = 126/237 (53%), Gaps = 9/237 (3%)
Query: 23  LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLK 82
           L+V+ R G+G DN+D+ AA   G+ V N P        + T   I  L R      Q+L+
Sbjct: 70  LRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTICHILNLYRRNTWLYQALR 129
Query: 83  EG------KWDRKLYTGT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED 135
           EG      +  R++ +G   + G+TL ++G GR G+ VA+R +AFG  VI +DP +    
Sbjct: 130 EGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYDPYLQDGI 189
Query: 136 AAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVD 194
              L +  +  L+D+   +D +++H  L     +LIN   +K+ ++G  +VN ARGG+VD
Sbjct: 190 ERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVD 249
Query: 195 ENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRV 251
           E AL  +LK G   GAALDV   EP    Q   L   P +I TPH    +++A + +
Sbjct: 250 EKALAQALKEGRIRGAALDVHESEPFSFAQG-PLKDAPNLICTPHTAWYSEQASLEM 305

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  122 bits (305), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/259 (37%), Positives = 148/259 (57%), Gaps = 17/259 (6%)
Query: 4   GLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
           GL+   + ++ AEV+ +A  L+V+     GVD++DL AA  +G+ V + PG    +  +L
Sbjct: 46  GLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADL 105
Query: 63  TCSLISALSRNVPQGCQSLKEG---KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
           T +L+ A++R V +G    ++G    W  +L  G +L G TL ++G+GRIG+ VA R  A
Sbjct: 106 TLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALA 165
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FGM+V+             L    L LE++   AD +++HTPL P+T  L+N E L   K
Sbjct: 166 FGMRVV-----YHARTPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMK 220
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVTP 238
           +G  ++N ARG +VD  AL+++L+ GH  GA LDV   EP P     + L   P  ++TP
Sbjct: 221 RGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYAL---PNAVITP 276
Query: 239 HLGA---STKEAQIRVAVE 254
           H+G+   +T+E    VAVE
Sbjct: 277 HIGSAGRTTRERMAEVAVE 295

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 12/267 (4%)
Query: 12  KVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
           +V A+ LQA   L+V+G A  G DN D+ A T +GV +   P    +   EL   L   L
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 71  SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
            R++      ++ GK   W  + Y GT L   T+  LG+G IG  +A R+Q +G  +   
Sbjct: 116 GRHLRAADAFVRSGKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYH 174
Query: 128 DP-MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
           +   +  +   +L +  +   +++  +D+I +  PL   T +L+NAE+L   + G  +VN
Sbjct: 175 EAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
             RG +VDE A+L +L+ G  GG A DVF  E+  ++++  +    L+ HP  + TPH+G
Sbjct: 235 PCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
           ++ +  ++ +    A+  + ALA   P
Sbjct: 295 SAVRAVRLEIERCAAQNILQALAGERP 321

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 139/267 (52%), Gaps = 12/267 (4%)
Query: 12  KVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
           +V A+ LQA   L+V+G A  G DN D+ A T +GV +   P    +   EL   L   L
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 71  SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF 127
            R++      ++ GK   W  + Y GT L   T+  LG+G IG  +A R+Q +G  +   
Sbjct: 116 GRHLRAADAFVRSGKFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYH 174
Query: 128 DP-MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
           +   +  +   +L +  +   +++  +D+I +  PL   T +L+NAE+L   + G  +VN
Sbjct: 175 EAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
             RG +VDE A+L +L+ G  GG A DVF  E+  ++++  +    L+ HP  + TPH+G
Sbjct: 235 PCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
           ++ +  ++ +    A+  + ALA   P
Sbjct: 295 SAVRAVRLEIERCAAQNILQALAGERP 321

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score =  115 bits (289), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 72/257 (28%), Positives = 127/257 (49%), Gaps = 10/257 (3%)
Query: 3   DGLVVRSDTKVTAEVLQ--ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           D L++  + K   EV+     N++ +     G D+IDL A   +G+ V NAP G  ++  
Sbjct: 46  DALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATA 105
Query: 61  ELTCSLISALSRNVPQGCQSLKEGKW---DRKLYTGTELYGKTLAVLGLGRIGREVALRM 117
           E+   L+   +R   +G + ++   W   +     G +L  KTL + G G IG+ +A R 
Sbjct: 106 EIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA 165
Query: 118 QAFGMKVIGFDPM--VSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
           Q F M +  FD     S ++A+        L+ +  ++ + +++ P  P+T+   N   +
Sbjct: 166 QGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATI 225
Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
           K   +G  VVN ARG +VD   ++ +L+ G    A  DVF  EP  +E  ++L   P   
Sbjct: 226 KSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDL---PNTF 282
Query: 236 VTPHLGASTKEAQIRVA 252
           + PH+G++  +A+  +A
Sbjct: 283 LFPHIGSAATQAREDMA 299

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 130/265 (49%), Gaps = 9/265 (3%)
Query: 17  VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
           + +A NL++   AG G D++DL +A  + V V      N IS  E    +I +L RN   
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP 168
Query: 77  GCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE 134
             +  ++G W+    +    +L    +  +  GRIG  V  R+  F + +   D     E
Sbjct: 169 SHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 228
Query: 135 DAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI 192
              K LN+      ED++P+ D +T++ PL P+T+++IN E LK  K+G  +VN ARG +
Sbjct: 229 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKL 288
Query: 193 VDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
            D +A+  +L+ G   G A DV+  +P   +  +  +  P   +TPH+  +T  AQ R A
Sbjct: 289 CDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM--PYNGMTPHISGTTLTAQARYA 346
Query: 253 V---EIAEQFIALANTNPQYTSIQG 274
               EI E F        +Y  +QG
Sbjct: 347 AGTREILEXFFEGRPIRDEYLIVQG 371

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 138/267 (51%), Gaps = 12/267 (4%)
Query: 12  KVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
           +V A+ LQA   L+V+G A  G DN D+ A T +GV +   P    +   EL   L   L
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 71  SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV-IG 126
            R++      ++ G+   W  + Y GT L   T+  LG+G IG  +A R+Q +G  +   
Sbjct: 116 GRHLRAADAFVRSGQFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYH 174
Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
               +  +   +L +  +   +++  +D+I +  PL   T +L+NAE+L   + G  +VN
Sbjct: 175 ARKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
             RG +VDE A+L +L+ G  GG A DVF  E+  ++++  +    L+ HP  + TPH+G
Sbjct: 235 PCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
           ++ +  ++ +    A+  + ALA   P
Sbjct: 295 SAVRAVRLEIERCAAQNILQALAGERP 321

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score =  115 bits (287), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 138/267 (51%), Gaps = 12/267 (4%)
Query: 12  KVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
           +V A+ LQA   L+V+G A  G DN D+ A T +GV +   P    +   EL   L   L
Sbjct: 56  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115
Query: 71  SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV-IG 126
            R++      ++ G+   W  + Y GT L   T+  LG+G IG  +A R+Q +G  +   
Sbjct: 116 GRHLRAADAFVRSGQFRGWQPRFY-GTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYH 174
Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
               +  +   +L +  +   +++  +D+I +  PL   T +L+NAE+L   + G  +VN
Sbjct: 175 ARKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
             RG +VDE A+L +L+ G  GG A DVF  E+  ++++  +    L+ HP  + TPH+G
Sbjct: 235 PCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIG 294
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
           ++ +  ++ +    A+  + ALA   P
Sbjct: 295 SAVRAVRLEIERCAAQNILQALAGERP 321

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score =  114 bits (286), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 130/265 (49%), Gaps = 9/265 (3%)
Query: 17  VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
           + +A NL++   AG G D++DL +A  + V V      N IS  E    +I +L RN   
Sbjct: 109 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP 168
Query: 77  GCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE 134
             +  ++G W+    +    +L    +  +  GRIG  V  R+  F + +   D     E
Sbjct: 169 SHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 228
Query: 135 DAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI 192
              K LN+      ED++P+ D +T++ PL P+T+++IN E LK  K+G  +VN ARG +
Sbjct: 229 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKL 288
Query: 193 VDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
            D +A+  +L+ G   G A DV+  +P   +  +  +  P   +TPH+  +T  AQ R A
Sbjct: 289 CDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM--PYNGMTPHISGTTLTAQARYA 346
Query: 253 V---EIAEQFIALANTNPQYTSIQG 274
               EI E F        +Y  +QG
Sbjct: 347 AGTREILECFFEGRPIRDEYLIVQG 371

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 130/265 (49%), Gaps = 9/265 (3%)
Query: 17  VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
           + +A NL++   AG G D++DL +A  + V V      N IS  E    +I +L RN   
Sbjct: 108 IAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLP 167
Query: 77  GCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE 134
             +  ++G W+    +    +L    +  +  GRIG  V  R+  F + +   D     E
Sbjct: 168 SHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 227
Query: 135 DAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI 192
              K LN+      ED++P+ D +T++ PL P+T+++IN E LK  K+G  +VN ARG +
Sbjct: 228 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKL 287
Query: 193 VDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVA 252
            D +A+  +L+ G   G A DV+  +P   +  +  +  P   +TPH+  +T  AQ R A
Sbjct: 288 CDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTM--PYNGMTPHISGTTLTAQARYA 345
Query: 253 V---EIAEQFIALANTNPQYTSIQG 274
               EI E F        +Y  +QG
Sbjct: 346 AGTREILECFFEGRPIRDEYLIVQG 370

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score =  114 bits (284), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/259 (32%), Positives = 133/259 (51%), Gaps = 19/259 (7%)
Query: 5   LVVRSDTKVTAEVL-QASNLQVVGRAG----TGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           +++R  T+VT ++L +   L+++ + G        +IDL A T KGV+VL   G   ++ 
Sbjct: 53  VLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGSP-VAP 111
Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDR----------KLYTGTELYGKTLAVLGLGRI 109
            ELT +L+ A  R +PQ   SLK G W +              G  L G+TL + G G+I
Sbjct: 112 AELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKI 171
Query: 110 GREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLED-IWPLADYITVHTPLIPQTKN 168
           G+ VA   +AFGM V+ +    S E A     A    +D ++  +D ++VH  L  +T++
Sbjct: 172 GQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRS 231
Query: 169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFEL 228
           +I    L + K     VN +R  +V+EN ++ +L  G  G AA+DVF  EP     T  L
Sbjct: 232 IITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHT--L 289
Query: 229 IKHPKVIVTPHLGASTKEA 247
           ++    I TPH+G   +E+
Sbjct: 290 LRMENCICTPHIGYVERES 308

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 122/264 (46%), Gaps = 23/264 (8%)
Query: 2   YDGLVVRSDTKVTA---EVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
           +DG+     T   A   E + A  ++ +     G DNID+TA  + G+ + N P  +  +
Sbjct: 45  FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAA 104
Query: 59  ACELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRM 117
             E   +    L RN+ +    L+ G +++   + G EL  +T+ V+G G IG+      
Sbjct: 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLF 164
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           + FG KVI +DP     D    +  SL  ED++  +D I +H P I Q  ++IN      
Sbjct: 165 KGFGAKVIAYDPYPMKGDHPDFDYVSL--EDLFKQSDVIDLHVPGIEQNTHIINEAAFNL 222
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH------ 231
            K G  V+N AR  ++D  A+L +LK G   G  +D +  E   +E    L KH      
Sbjct: 223 MKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE---TEDLLNLAKHGSFKDP 279
Query: 232 --------PKVIVTPHLGASTKEA 247
                   P V+++PH+   T+ A
Sbjct: 280 LWDELLGMPNVVLSPHIAYYTETA 303

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 136/267 (50%), Gaps = 12/267 (4%)
Query: 12  KVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
           +V A+ LQA   L+V+G A  G DN D+ A T +GV +   P    +   EL   L   L
Sbjct: 57  RVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 116
Query: 71  SRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV-IG 126
            R++      ++ G+   W  + Y GT L   T+  LG G IG   A R+Q +G  +   
Sbjct: 117 GRHLRAADAFVRSGQFRGWQPRFY-GTGLDNATVGFLGXGAIGLAXADRLQGWGATLQYH 175
Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
               +  +   +L +  +   +++  +D+I +  PL   T +L+NAE+L   + G  +VN
Sbjct: 176 AAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVN 235
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFE----LIKHPKVIVTPHLG 241
             RG +VDE A+L +L+ G  GG A DVF  E+  ++++  +    L+ HP  + TPH+G
Sbjct: 236 PCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLFTPHIG 295
Query: 242 ASTKEAQIRVAVEIAEQFI-ALANTNP 267
           ++ +  ++ +    A+  + ALA   P
Sbjct: 296 SAVRAVRLEIERCAAQNILQALAGERP 322

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 119/230 (51%), Gaps = 10/230 (4%)
Query: 22  NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSL 81
           +L ++   G G D +DL  A R+ + V   PG       +L  +L  A+ R V  G + +
Sbjct: 93  SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLV 152
Query: 82  KEGKW--DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-PMVSVEDAAK 138
           +EG+W    +L  G    GK + VLGLG+IGR +A R +AFG  V  ++   +S  D   
Sbjct: 153 REGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGXSVRYWNRSTLSGVDW-- 210
Query: 139 LNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL 198
             IA     D+   +D + V       T+N+++A +L+       VVNVARG +VDE+AL
Sbjct: 211 --IAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDAL 268
Query: 199 LDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 248
           +++LK G   GA LDVF  EP       E    P  ++ PH G++T E +
Sbjct: 269 IEALKSGTIAGAGLDVFVNEPAIRS---EFHTTPNTVLXPHQGSATVETR 315

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score =  110 bits (274), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 134/268 (50%), Gaps = 21/268 (7%)
Query: 12  KVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISAL 70
           K+T E+L +   L+++     G D+IDL    +KG+LV + P  +  S  E T + I  L
Sbjct: 53  KLTEELLSKXPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTL 112
Query: 71  SRNVPQGCQSLKEGKW--DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD 128
            + + +    +K+  +  D ++    EL   TL V+G GRIG  VA    AFG KV+ +D
Sbjct: 113 VKRLKRIEDRVKKLNFSQDSEI-LARELNRLTLGVIGTGRIGSRVAXYGLAFGXKVLCYD 171
Query: 129 PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
            +V  ED  +       L+++   +D I++H P   +T + IN E +   K GV ++N A
Sbjct: 172 -VVKREDLKEKGCVYTSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVYLINTA 230
Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEP-------------PKSEQTFELIKHPKVI 235
           RG +VD +AL  + + G   G  LDVF +E               K+ +  EL     VI
Sbjct: 231 RGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVI 290
Query: 236 VTPHLGASTKEAQIRV---AVEIAEQFI 260
           +TPH+   T ++  R+    V++ + F+
Sbjct: 291 ITPHIAYYTDKSLERIREETVKVVKAFV 318

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score =  108 bits (269), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 124/246 (50%), Gaps = 16/246 (6%)
Query: 9   SDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLI 67
           S+    AE++ A   L++V     G+D +DL     KGV V N P        +L   LI
Sbjct: 73  SNAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLI 132
Query: 68  SALSRNVPQGCQSLKEGKW---DRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
            A+ R + +  + ++ G W   D KL T  +  GK + ++GLGRIG  VA R +AF   +
Sbjct: 133 LAVLRRICECDKYVRRGAWKFGDFKLTT--KFSGKRVGIIGLGRIGLAVAERAEAFDCPI 190
Query: 125 IGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKC-KKGV 182
             F    S       N    G + ++   +D + V  PL P+T ++IN EV+     KGV
Sbjct: 191 SYF----SRSKKPNTNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGV 246
Query: 183 RVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGA 242
            ++N+ RG  VDE  L+ +L  G  GGA LDVF  EP   E+ F L     V++ PH+G+
Sbjct: 247 -LINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGL---ENVVLLPHVGS 302
Query: 243 STKEAQ 248
            T E +
Sbjct: 303 GTVETR 308

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 136/278 (48%), Gaps = 12/278 (4%)
Query: 4   GLVVRSDTKVTAEVLQAS--NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           GL+      V   +L A+  NL+V+     G+D++ L    ++G+ V   P     +  E
Sbjct: 56  GLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAE 115
Query: 62  LTCSLISALSRNVPQGCQSLKEGKWD--RKLY-TGTELYGKTLAVLGLGRIGREVALRMQ 118
           L  SL+    R +P+  + +K G W   + L+  G  L   T+ ++GLGRIG+ +A R++
Sbjct: 116 LAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK 175
Query: 119 AFGMK---VIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
            FG++     G  P    E+AA+     +   ++   +D+I V   L P T+ L N +  
Sbjct: 176 PFGVQRFLYTGRQP--RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFF 233
Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
           +K K+    +N++RG +V+++ L  +L  G    A LDV   EP  +      +K+   +
Sbjct: 234 QKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKN--CV 291
Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQ 273
           + PH+G++T   +  +++  A   +A     P  + ++
Sbjct: 292 ILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPSELK 329

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score =  105 bits (263), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 135/278 (48%), Gaps = 12/278 (4%)
Query: 4   GLVVRSDTKVTAEVLQAS--NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
           GL+      V   +L A+  NL+V+     G+D++ L    ++G+ V   P     +  E
Sbjct: 54  GLLCLLSDHVDKRILDAAGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAE 113
Query: 62  LTCSLISALSRNVPQGCQSLKEGKWD--RKLY-TGTELYGKTLAVLGLGRIGREVALRMQ 118
           L  SL+    R +P+  + +K G W   + L+  G  L   T+ ++GLGRIG+ +A R++
Sbjct: 114 LAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK 173
Query: 119 AFGMK---VIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
            FG++     G  P    E+AA+     +   ++   +D+I V   L P T+ L N +  
Sbjct: 174 PFGVQRFLYTGRQP--RPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFF 231
Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
           +K K+    +N++RG +V+++ L  +L  G    A LDV   EP  +      +K+   +
Sbjct: 232 QKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKN--CV 289
Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQ 273
           + PH+G++T   +   ++  A   +A     P  + ++
Sbjct: 290 ILPHIGSATHRTRNTXSLLAANNLLAGLRGEPXPSELK 327

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score =  104 bits (260), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 121/262 (46%), Gaps = 22/262 (8%)
Query: 10  DTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISA 69
           D +V  + L    ++ +G    G + I+     +  +LV N P  +  +  E+T +    
Sbjct: 58  DEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMY 117
Query: 70  LSRNVPQGCQSLKEGK---WDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG 126
           L R + +    +       W   L +  E+Y  T+ ++G+G IG  VA    A G KVI 
Sbjct: 118 LLRKIGEFRYRMDHDHDFTWPSNLISN-EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIA 176
Query: 127 FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
           +D   + E    L       + +   AD +++HTPL P T+N+I  + LK+ KK   ++N
Sbjct: 177 YDVAYNPEFEPFLTYTDF--DTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLIN 234
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFC-------------EEPPKSEQTFELIKHPK 233
            ARG +VD  AL+ +L+ G   GA LD                 E P+  +T  L K P 
Sbjct: 235 CARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKT--LAKMPN 292
Query: 234 VIVTPHLGASTKEAQIRVAVEI 255
           V++TPH  A   E  IR  V+I
Sbjct: 293 VVITPH-SAFYTETSIRNMVQI 313

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 118/259 (45%), Gaps = 15/259 (5%)
Query: 3   DGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           DG+VV       AE LQA   + +  +     GVDNID+  A   G  + N P  +  + 
Sbjct: 48  DGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAI 107
Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
            E      + + R      + +           G E+  + + V+G G IG+     M+ 
Sbjct: 108 AEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEG 167
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FG KVI +D   + E   K       L+D++  AD I++H P +P   ++IN E + K K
Sbjct: 168 FGAKVITYDIFRNPE-LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMK 226
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE-----------L 228
           + V +VNV+RG +VD +A++  L  G   G A+DV+  E     + +E           L
Sbjct: 227 QDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADL 286
Query: 229 IKHPKVIVTPHLGASTKEA 247
           I  P V+VTPH    T  A
Sbjct: 287 IARPNVLVTPHTAFYTTHA 305

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score =  101 bits (252), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 123/258 (47%), Gaps = 19/258 (7%)
Query: 19  QASNLQVVGRAGTGVDNIDLTA--ATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
           +A  L++V  AG G D+IDL     T K + VL   G N +S  E     +  L RN   
Sbjct: 81  KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVP 140
Query: 77  GCQSLKEGKWD-----RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV 131
             + +    W+     +  Y   ++ GKT+A +G GRIG  V  R+  F  K + +    
Sbjct: 141 AHEQIINHDWEVAAIAKDAY---DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 197
Query: 132 SVEDAAKLNIASLGLEDIWPL---ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
           ++   A+  + +  +E+I  L   AD +TV+ PL   TK LIN E+L K KKG  +VN A
Sbjct: 198 ALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 257
Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK---VIVTPHLGASTK 245
           RG I     +  +L+ G   G   DV+  +P   +  +  +++       +TPH   +T 
Sbjct: 258 RGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTL 317
Query: 246 EAQIRVA---VEIAEQFI 260
           +AQ R A   V I E F 
Sbjct: 318 DAQTRYAQGTVNILESFF 335

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score =  101 bits (252), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 120/249 (48%), Gaps = 8/249 (3%)
Query: 5   LVVRSDTKVTAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
           L V +   +TAEV++     L+ +     G D+ID  AA   G+ VL+ P     +  E+
Sbjct: 75  LFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEI 134
Query: 63  TCSLISALSRNVPQGCQSLKEGKWDRKLYT---GTELYGKTLAVLGLGRIGREVALRMQA 119
              L+    R   +  + ++ G W     T   G  L G+ L + G GRIGR +A R + 
Sbjct: 135 AXLLVLNACRRGYEADRXVRSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIATRARG 194
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FG+ +   +         +  I    L+ +   +D   +  P  P+ K  ++ + + K  
Sbjct: 195 FGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIP 254
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
           +G  V+N++RG +++++AL+++L+  H   A LDVF  EP    +   L     + +TPH
Sbjct: 255 EGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSL---DNIFLTPH 311
Query: 240 LGASTKEAQ 248
           +G++T E +
Sbjct: 312 IGSATHETR 320

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 10/270 (3%)
Query: 13  VTAE-VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALS 71
           +TAE + +A  L++   AG G D++DL AA    + V      N  S  E    ++  L 
Sbjct: 103 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLV 162
Query: 72  RNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
           RN        + G W+    +    ++ G  +  +  GRIG  V   +  F M +   D 
Sbjct: 163 RNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDR 222
Query: 130 MVSVEDAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
               E   K LN+      ED++   D +T++ PL P+T+++IN E LK  K+G  +VN 
Sbjct: 223 HRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNT 282
Query: 188 ARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 247
           ARG + D +A++ +L+ G   G A DV+  +P  ++  +  + H    +TPH+  ++  A
Sbjct: 283 ARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNG--MTPHISGTSLSA 340
Query: 248 QIRVAV---EIAEQFIALANTNPQYTSIQG 274
           Q R A    EI E +        +Y  +QG
Sbjct: 341 QTRYAAGTREILECYFEGRPIRDEYLIVQG 370

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/270 (28%), Positives = 128/270 (47%), Gaps = 10/270 (3%)
Query: 13  VTAE-VLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALS 71
           +TAE + +A  L++   AG G D++DL AA    + V      N  S  E    ++  L 
Sbjct: 104 LTAERIAKAPKLKLALTAGIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLV 163
Query: 72  RNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
           RN        + G W+    +    ++ G  +  +  GRIG  V   +  F M +   D 
Sbjct: 164 RNYIPSHDWARNGGWNIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAPFDMHLHYTDR 223
Query: 130 MVSVEDAAK-LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV 187
               E   K LN+      ED++   D +T++ PL P+T+++IN E LK  K+G  +VN 
Sbjct: 224 HRLPEAVEKELNLTWHATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNT 283
Query: 188 ARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEA 247
           ARG + D +A++ +L+ G   G A DV+  +P  ++  +  + H    +TPH+  ++  A
Sbjct: 284 ARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNG--MTPHISGTSLSA 341
Query: 248 QIRVAV---EIAEQFIALANTNPQYTSIQG 274
           Q R A    EI E +        +Y  +QG
Sbjct: 342 QTRYAAGTREILECYFEGRPIRDEYLIVQG 371

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 129/278 (46%), Gaps = 19/278 (6%)
Query: 3   DGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           DG+VV      TA+ LQA   + +  +     GVDNID+  A   G  + N P  +  + 
Sbjct: 48  DGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNAI 107
Query: 60  CELTCSLISALSRNVPQGCQSL--KEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRM 117
            E      + + R   +  + +  ++ +W   +  G E+  + + V+G G IG+     M
Sbjct: 108 AEHAAIQAARVLRQDKRMDEKMAKRDLRWAPTI--GREVRDQVVGVVGTGHIGQVFMRIM 165
Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           + FG KVI +D   + E   K       L+D++  AD I++H P +P   ++IN + + +
Sbjct: 166 EGFGAKVIAYDIFKNPE-LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDKSIAE 224
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE---------- 227
            K GV +VN +RG +VD +A++  L  G   G  +D + +E     + +E          
Sbjct: 225 MKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLA 284
Query: 228 -LIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALAN 264
            LI  P V+VTPH    T  A   + V+     + L N
Sbjct: 285 DLIDRPNVLVTPHTAFYTTHAVRNMVVKAFNNNLKLIN 322

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 119/247 (48%), Gaps = 16/247 (6%)
Query: 19  QASNLQVVGRAGTGVDNIDLTA--ATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ 76
           +A  L++V  AG G D+IDL     T K + VL   G N +S  E     +  L RN   
Sbjct: 82  KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVP 141
Query: 77  GCQSLKEGKWD-----RKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV 131
             + +    W+     +  Y   ++ GKT+A +G GRIG  V  R+  F  K + +    
Sbjct: 142 AHEQIINHDWEVAAIAKDAY---DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQ 198
Query: 132 SVEDAAKLNIASLGLEDIWPL---ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
           ++   A+  + +  +E+I  L   AD +TV+ PL   TK LIN E+L K KKG  +VN A
Sbjct: 199 ALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTA 258
Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK---VIVTPHLGASTK 245
           RG I     +  +L+ G   G   DV+  +P   +  +  +++       +TPH   +T 
Sbjct: 259 RGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTL 318
Query: 246 EAQIRVA 252
           +AQ R A
Sbjct: 319 DAQTRYA 325

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score = 98.2 bits (243), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 76/259 (29%), Positives = 117/259 (45%), Gaps = 15/259 (5%)
Query: 3   DGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           DG+VV       AE LQA   + +  +     GVDNID+  A   G  + N P  +  + 
Sbjct: 48  DGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAI 107
Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
            E      + + R      + +           G E+  + + V+G G IG+     M+ 
Sbjct: 108 AEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEG 167
Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FG KVI +D   + E   K       L+D++  AD I++H P +P   ++IN E + K K
Sbjct: 168 FGAKVITYDIFRNPE-LEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMK 226
Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE-----------L 228
           + V +VNV+RG +VD +A++  L  G   G A+DV+  E     + +E           L
Sbjct: 227 QDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADL 286
Query: 229 IKHPKVIVTPHLGASTKEA 247
           I  P V+VTP     T  A
Sbjct: 287 IARPNVLVTPKTAFYTTHA 305

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 21  SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80
           S+L+V   AG G D +DL A   +GV   N+ G    +  +L   LI ++ R      ++
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA 138
Query: 81  LKEGK---WDR-KLYTGTELY---GKTLAVLGLGRIGREVALR-MQAFGMKVIGFDPMVS 132
            + G    ++R  L  G   +   G  L  +GLG I +E+A + +   GMK++ +D  V+
Sbjct: 139 ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD--VA 196
Query: 133 VEDAAKLNIASLG------LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
             DA      +LG      LE++   +D ++V  P +  T +LI+       K G R+VN
Sbjct: 197 PADAETEK--ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN 254
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKE 246
            ARG ++ ++AL+ +LK G    A LDV   EP  S+   ELI+   V +T H+G     
Sbjct: 255 TARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSK---ELIEMKHVTLTTHIGG---- 307
Query: 247 AQIRVAVEIAEQFIALANTNPQYTSIQG 274
               VA+E   +F  L  TN     +QG
Sbjct: 308 ----VAIETFHEFERLTMTNIDRFLLQG 331

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 21  SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80
           S+L+V   AG G D +DL A   +GV   N+ G    +  +L   LI ++ R      ++
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA 138
Query: 81  LKEGK---WDR-KLYTGTELY---GKTLAVLGLGRIGREVALR-MQAFGMKVIGFDPMVS 132
            + G    ++R  L  G   +   G  L  +GLG I +E+A + +   GMK++ +D  V+
Sbjct: 139 ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD--VA 196
Query: 133 VEDAAKLNIASLG------LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
             DA      +LG      LE++   +D ++V  P +  T +LI+       K G R+VN
Sbjct: 197 PADAETEK--ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN 254
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKE 246
            ARG ++ ++AL+ +LK G    A LDV   EP  S+   ELI+   V +T H+G     
Sbjct: 255 TARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSK---ELIEMKHVTLTTHIGG---- 307
Query: 247 AQIRVAVEIAEQFIALANTNPQYTSIQG 274
               VA+E   +F  L  TN     +QG
Sbjct: 308 ----VAIETFHEFERLTMTNIDRFLLQG 331

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/268 (30%), Positives = 130/268 (48%), Gaps = 29/268 (10%)
Query: 21  SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80
           S+L+V   AG G D +DL A   +GV   N+ G    +  +L   LI ++ R      ++
Sbjct: 79  SSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA 138
Query: 81  LKEGK---WDR-KLYTGTELY---GKTLAVLGLGRIGREVALR-MQAFGMKVIGFDPMVS 132
            + G    ++R  L  G   +   G  L  +GLG I +E+A + +   GMK++ +D  V+
Sbjct: 139 ARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYD--VA 196
Query: 133 VEDAAKLNIASLG------LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN 186
             DA      +LG      LE++   +D ++V  P +  T +LI+       K G R+VN
Sbjct: 197 PADAETEK--ALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVN 254
Query: 187 VARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKE 246
            ARG ++ ++AL+ +LK G    A LDV   EP  S+   ELI+   V +T H+G     
Sbjct: 255 TARGPVISQDALIAALKSGKLLSAGLDVHEFEPNVSK---ELIEMKHVTLTTHIGG---- 307
Query: 247 AQIRVAVEIAEQFIALANTNPQYTSIQG 274
               VA+E   +F  L  TN     +QG
Sbjct: 308 ----VAIETFHEFERLTMTNIDRFLLQG 331

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 32/284 (11%)
Query: 3   DGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
           D L VRS TKV   +L  + +  VG A  G D++D     + G+    APG N I+  E 
Sbjct: 42  DALXVRSVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEY 101
Query: 63  TCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM 122
             S +  L+                     G  L  +T+ ++G+G +G  +  R++A G+
Sbjct: 102 VFSALLXLAER------------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALGI 143
Query: 123 KVIGFDPMVSVE-DAAKLNIASLGLEDIWPLADYITVHTPLIP----QTKNLINAEVLKK 177
           + +  DP  +   D          L+++   AD +T HTPL      +T +L +  ++++
Sbjct: 144 RTLLCDPPRAARGDEGDFRT----LDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRR 199
Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
            K G  ++N  RG +VD  ALL  L  G      LDV+  EP  +    E +     I T
Sbjct: 200 LKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVD----IGT 255
Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPAL 281
            H+   T E + R   ++ E + A      Q  +++ +L AP  
Sbjct: 256 SHIAGYTLEGKARGTTQVFEAYSAFIGRE-QRVALETLLPAPEF 298

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 132/278 (47%), Gaps = 29/278 (10%)
Query: 2   YDGLVVRSD---TKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
           +D +++R +    K   ++ +   ++ +     G D+ID   A   G  +   P  +  +
Sbjct: 46  FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNA 105
Query: 59  ACELTCSLISALSRNVPQGCQ--SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALR 116
             EL  +    L R+        + K  K D  +++  E+   T+ V+GLGRIGR  A  
Sbjct: 106 IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFS-KEVRNCTVGVVGLGRIGRVAAQI 164
Query: 117 MQAFGMKVIGFD--PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
               G  VIG D   +  +ED        + L+++   +D IT+H P I +   ++  + 
Sbjct: 165 FHGMGATVIGEDVFEIKGIEDYC----TQVSLDEVLEKSDIITIHAPYIKENGAVVTRDF 220
Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP--------------P 220
           LKK K G  +VN ARG +VD  A++++++ G  GG   DV   E               P
Sbjct: 221 LKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENP 280
Query: 221 KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQ 258
             E+  +L  +P+V++TPHLG+ T EA ++  VE++ Q
Sbjct: 281 LFEKLVDL--YPRVLITPHLGSYTDEA-VKNMVEVSYQ 315

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/222 (31%), Positives = 102/222 (45%), Gaps = 7/222 (3%)
Query: 19  QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC 78
           +A+ L        GVD + L A  R+   + N  G       E     + +L R +P   
Sbjct: 64  KANKLSWFQSTYAGVD-VLLDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYR 122
Query: 79  QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK 138
           +  K+  W    Y G  L G+TL +LG G IG+ +A   + FGMKV+G       E A  
Sbjct: 123 EQQKQRLWQSHPYQG--LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVS-RSGRERAGF 179
Query: 139 LNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENA 197
             +  L  L  +   AD I    P   +T +L  A   + CK G  + NV RG  ++E  
Sbjct: 180 DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGD 239
Query: 198 LLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
           LL +L+ G  G A LDVF +EP  ++    L   P +I+TPH
Sbjct: 240 LLTALRTGKLGMAVLDVFEQEPLPADSP--LWGQPNLIITPH 279

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 116/238 (48%), Gaps = 14/238 (5%)
Query: 21  SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS 80
           + L+ V     GVD + L A    GV+V N  G   I A  ++ S+++A+  +V +G  +
Sbjct: 60  NQLKFVQVISAGVDYLPLKALQAAGVVVANTSG---IHADAISESVLAAM-LSVVRGYHA 115
Query: 81  L---KEG--KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED 135
               + G  +W   + T T L G+ L + G G+IG+ +A +  A GM VIG +      D
Sbjct: 116 AWLNQRGARQWALPMTTST-LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPAD 174
Query: 136 AAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDE 195
                +A     D    A++I    PL P T +L + E+ ++ K+   ++N+ RG  VD 
Sbjct: 175 HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234
Query: 196 NALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAV 253
            AL+ +L       AALDV   EP  ++    L +   V++TPH+  S + A  R  V
Sbjct: 235 TALMTALDHHQLSMAALDVTEPEPLPTDH--PLWQRDDVLITPHI--SGQIAHFRATV 288

>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 82/161 (50%), Gaps = 11/161 (6%)
Query: 91  YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIW 150
           YT  E    ++ + G G +G +VA  +QA+G  +  +          +   + +G E++ 
Sbjct: 135 YTREEF---SVGIXGAGVLGAKVAESLQAWGFPLRCWSRSRKSWPGVE---SYVGREELR 188
Query: 151 PLADYITVHTPLIP---QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC 207
              +   V   L+P   QT  +IN+E+L +   G  V+N+ARG  V E  LL +L  G  
Sbjct: 189 AFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKL 248
Query: 208 GGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 248
            GA LDVF +EP   E    L +HP+V  TPH+ A T+ A+
Sbjct: 249 KGAXLDVFSQEPLPQESP--LWRHPRVAXTPHIAAVTRPAE 287

>pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 66/225 (29%), Positives = 111/225 (49%), Gaps = 11/225 (4%)
Query: 32  GVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLY 91
           GVD+ID+       VL  NA G   IS  E   +L+ A ++N+ +  +  K G + +   
Sbjct: 59  GVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENNELXKAGIFRQS-- 115
Query: 92  TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWP 151
             T LYGK L +LG G IGR VA   +AFG +VI +    SV+    +++ S    D++ 
Sbjct: 116 PTTLLYGKALGILGYGGIGRRVAHLAKAFGXRVIAY-TRSSVDQ--NVDVISESPADLFR 172
Query: 152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAA 211
            +D++ +  PL  +T+  +N+ +L   +K + +VNVAR  +V +   +  LK        
Sbjct: 173 QSDFVLIAIPLTDKTRGXVNSRLLANARKNLTIVNVARADVVSKPDXIGFLKERSDVWYL 232
Query: 212 LDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIA 256
            DV+  EP  +E           I++PH+          +A+++A
Sbjct: 233 SDVWWNEPEITETNLR-----NAILSPHVAGGXSGEIXDIAIQLA 272

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 127/284 (44%), Gaps = 30/284 (10%)
Query: 3   DGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACEL 62
           D L+VRS T+V+   L  S ++ VG    G D++DL      G+   +APG N     + 
Sbjct: 39  DVLLVRSVTEVSRAALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDY 98
Query: 63  TCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM 122
               + A++                     G +L  +T  V+G G++G  +   ++  G 
Sbjct: 99  VLGCLLAMAE------------------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGW 140
Query: 123 KVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ----TKNLINAEVLKKC 178
           KV+  DP      A + +   + LE +   AD I++HTPL       T++L++   L   
Sbjct: 141 KVLVCDPP---RQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAAL 197
Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238
           + G  +VN +RG +VD  AL   L+ G     ALDV+  EP    Q    +    +I TP
Sbjct: 198 RPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP----QADPELAARCLIATP 253
Query: 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALA 282
           H+   + E ++R   +I + + A      +  S+Q VL    LA
Sbjct: 254 HIAGYSLEGKLRGTAQIYQAYCAWRGIA-ERVSLQDVLPETWLA 296

>pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 4/163 (2%)
Query: 60  CELTCSLISALSRNVPQGCQSLKEGK--WDRKLYTGTELY-GKTLAVLGLGRIGREVALR 116
            E+      AL+R +     + +EG   W  +      L  G  + ++G G +G+ +   
Sbjct: 135 AEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRV 194
Query: 117 MQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176
           +  F  ++  FDP +      +  +    LED+   +D+I V   +  + K  + AE   
Sbjct: 195 LSGFRARIRVFDPWLPRSXLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFS 254
Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP 219
             ++G   + ++R  +VD +AL  ++  GH   AA DV+ EEP
Sbjct: 255 SXRRGAAFILLSRADVVDFDALXAAVSSGHI-VAASDVYPEEP 296

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/231 (25%), Positives = 99/231 (42%), Gaps = 12/231 (5%)
Query: 11  TKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISA 69
           +++TAE L +   L+ +     G+D++   +      +  NA G N  +  E   +L+ A
Sbjct: 38  SRITAEELAKXPRLKFIQVVTAGLDHLPWESIPPHVTVAGNA-GSNADAVAEFALALLLA 96
Query: 70  LSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP 129
             + + Q  +  K G + R +     + G+ +AVLGLG IG  V   + A G +V GF  
Sbjct: 97  PYKRIIQYGEKXKRGDYGRDVEIPL-IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFS- 154
Query: 130 MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR 189
               E   +   +   LE+    A       PL   T+ L+  + L    +    VNV R
Sbjct: 155 RTPKEGPWRFTNS---LEEALREARAAVCALPLNKHTRGLVKYQHLALXAEDAVFVNVGR 211
Query: 190 GGIVDENALLDSLKCGHCGGAALDVFC--EEPPKSEQTFELIKHPKVIVTP 238
             ++D + +L  LK       A DV+    +  K  + F L   P V+ TP
Sbjct: 212 AEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSL---PNVVATP 259

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	333
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	1e-158
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-155
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	1e-154
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	1e-153
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	1e-149
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	1e-144
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	1e-139
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	1e-137
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	1e-131
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-131
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	1e-130
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	1e-129
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	1e-124
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	1e-121
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	1e-120
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	1e-108
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	1e-107
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	1e-107
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	1e-106
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	1e-104
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	7e-99
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	2e-96
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	4e-87
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	4e-87
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	7e-85
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	2e-79
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	4e-79
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-75
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	5e-69
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	6e-69
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	7e-57
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	5e-53
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	1e-04
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	5e-04

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  446 bits (1149), Expect = e-158
 Identities = 164/268 (61%), Positives = 197/268 (73%), Gaps = 4/268 (1%)

Query: 1   KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
             +GL+VRS TKVTA+V+  A  LQVVGRAGTGVDN+DL AATRKG+LV+N P GN +SA
Sbjct: 67  DCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSA 126

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
            ELTC +I  L+R +PQ   S+K+GKW+RK + GTEL GKTL +LGLGRIGREVA RMQ+
Sbjct: 127 AELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQS 186

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           FGMK IG+DP++S E +A   +  L LE+IWPL D+ITVHTPL+P T  L+N     +CK
Sbjct: 187 FGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCK 246

Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
           KGVRVVN ARGGIVDE ALL +L+ G C GAALDVF EEPP+      L+ H  VI  PH
Sbjct: 247 KGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDR---ALVDHENVISCPH 303

Query: 240 LGASTKEAQIRVAVEIAEQFIALANTNP 267
           LGASTKEAQ R   EIA QF+ +     
Sbjct: 304 LGASTKEAQSRCGEEIAVQFVDMVKGKS 331

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  436 bits (1124), Expect = e-155
 Identities = 110/261 (42%), Positives = 161/261 (61%), Gaps = 3/261 (1%)

Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            + ++VRS  KVT  V++ A  L+V+ RAG G+DNID+ AA  KG+ V+NAP  +  S  
Sbjct: 45  VEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVA 104

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           EL   L+ +++R +    + ++EG W +K   G EL GKT+ ++G GRIG +VA    A 
Sbjct: 105 ELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANAL 164

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM ++ +DP  + E A ++N   + LE +   +D +T+H PL+  T +LIN E LK  KK
Sbjct: 165 GMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKK 224

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
              ++N +RG +VD NAL+ +LK G   GA LDVF EEP   +    L K   V++TPH+
Sbjct: 225 TAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDH--PLTKFDNVVLTPHI 282

Query: 241 GASTKEAQIRVAVEIAEQFIA 261
           GAST EAQ R  VE+AE+ + 
Sbjct: 283 GASTVEAQERAGVEVAEKVVK 303

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  434 bits (1119), Expect = e-154
 Identities = 104/267 (38%), Positives = 151/267 (56%), Gaps = 3/267 (1%)

Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           YD +VVRS TKVT +V++    L+++ RAG G+DNID   A ++ + V+ APG +  SA 
Sbjct: 47  YDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAV 106

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           ELT  L+ A +R +       K G + +    G EL GKT+ ++G GRIG +V +   A 
Sbjct: 107 ELTIGLMIAAARKMYTSMALAKSGIFKK--IEGLELAGKTIGIVGFGRIGTKVGIIANAM 164

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GMKV+ +D +   E A K+N  ++ LE++   +D I++H  +    K +I+    +  K 
Sbjct: 165 GMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKD 224

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
            V +VN +R   V+  ALLD +K G     A DVF  EPPK E   EL+KH +VIVT H+
Sbjct: 225 NVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHI 284

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNP 267
           GA TKEAQ RVA    +  +       
Sbjct: 285 GAQTKEAQKRVAEMTTQNLLNAMKELG 311

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  439 bits (1132), Expect = e-153
 Identities = 139/307 (45%), Positives = 183/307 (59%), Gaps = 10/307 (3%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            D L+VRS T V AEVL A+  L++V RAG G+DN+D+ AAT +GVLV+NAP  N  SA 
Sbjct: 45  ADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAA 104

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           E   +L+ A SR +P    SL+E  W R  ++GTE++GKT+ V+GLGRIG+ VA R+ AF
Sbjct: 105 EHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAF 164

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           G  V+ +DP VS   AA+L I  L L+D+   AD+I+VH P  P+T  LI+ E L K K 
Sbjct: 165 GAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKP 224

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
           GV +VN ARGG+VDE AL D++  GH   A LDVF  EP        L +  +V+VTPHL
Sbjct: 225 GVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDS---PLFELAQVVVTPHL 281

Query: 241 GASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLG 300
           GAST EAQ R   ++AE              +   +N        N E   W+ L R LG
Sbjct: 282 GASTAEAQDRAGTDVAESVRLALAGEF----VPDAVNVGGGVV--NEEVAPWLDLVRKLG 335

Query: 301 KISSQLL 307
            ++  L 
Sbjct: 336 VLAGVLS 342

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  425 bits (1095), Expect = e-149
 Identities = 96/312 (30%), Positives = 151/312 (48%), Gaps = 11/312 (3%)

Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
              + +RS T++T E+   A+ L  VG    G + ++L AA ++G+ V NAP  N  S  
Sbjct: 59  AHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVA 118

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           EL    I  L R +     S   G W++      E+ GKTL ++G G IG +V    ++ 
Sbjct: 119 ELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESL 178

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
           GM V  +D     +     N+     L+++   +D +++H P    T  LI    L+K K
Sbjct: 179 GMTVRYYDT---SDKLQYGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMK 235

Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVT 237
           KG  ++N ARG  VD  AL   L+ GH  GAA+DVF  EP  + + F   L     VI+T
Sbjct: 236 KGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILT 295

Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLAR 297
           PH+G ST+EAQ R+  E+  + +  ++         G +N P +     P  T ++ +  
Sbjct: 296 PHIGGSTEEAQERIGTEVTRKLVEYSDVGS----TVGAVNFPQVQLPPRPTGTRFMHVHE 351

Query: 298 SLGKISSQLLQT 309
           +   I + L+  
Sbjct: 352 NRPGILNSLMNV 363

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  410 bits (1057), Expect = e-144
 Identities = 94/326 (28%), Positives = 155/326 (47%), Gaps = 23/326 (7%)

Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
              + +RS T +T +V+  A  L  +G    G + +DL AA ++G+ V NAP  N  S  
Sbjct: 48  AHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVA 107

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           EL    +  L R VP+       G  ++      E  GK L ++G G IG ++ +  ++ 
Sbjct: 108 ELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL 167

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           GM V  +D     +           L D+  ++D +++H P  P TKN++ A+ +   K 
Sbjct: 168 GMYVYFYDI--ENKLPLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKP 225

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE--LIKHPKVIVTP 238
           G  ++N +RG +VD  AL D+L   H  GAA+DVF  EP  +   F   L +   V++TP
Sbjct: 226 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 285

Query: 239 HLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRN------------ 286
           H+G ST+EAQ  + +E+A + I  ++           +N P ++   +            
Sbjct: 286 HIGGSTQEAQENIGLEVAGKLIKYSDNGS----TLSAVNFPEVSLPLHGGRRLMHIHENR 341

Query: 287 PENTSWIS--LARSLGKISSQLLQTS 310
           P   + ++   A     I++Q LQTS
Sbjct: 342 PGVLTALNKIFAEQGVNIAAQYLQTS 367

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  398 bits (1025), Expect = e-139
 Identities = 91/279 (32%), Positives = 140/279 (50%), Gaps = 11/279 (3%)

Query: 1   KYDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           +  G ++     +T E L+    L+++ R G+G DNID+ +A   G+ V N P  +    
Sbjct: 63  EAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEET 122

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRK-------LYTGTELYGKTLAVLGLGRIGRE 112
            + T   I  L R      Q+L+EG   +              + G+TL ++GLGR+G+ 
Sbjct: 123 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 182

Query: 113 VALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLIN 171
           VALR +AFG  V+ +DP +S      L +  +  L+D+   +D +T+H  L     +LIN
Sbjct: 183 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 242

Query: 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH 231
              +K+ ++G  +VN ARGG+VDE AL  +LK G   GAALDV   EP    Q   L   
Sbjct: 243 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDA 301

Query: 232 PKVIVTPHLGASTKEAQIRVAVEIAEQFI-ALANTNPQY 269
           P +I TPH    +++A I +  E A +   A+    P  
Sbjct: 302 PNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDS 340

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  392 bits (1008), Expect = e-137
 Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 9/273 (3%)

Query: 2   YDGLVVRS--DTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
              L+        VTAE ++ A NL+++  AG G D+IDL AA   G+ V    G N +S
Sbjct: 63  LHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVS 122

Query: 59  ACELTCSLISALSRNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALR 116
             E     I  L RN   G   + +G+W+     Y   +L GKT+  +G GRIG+ +  R
Sbjct: 123 VAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQR 182

Query: 117 MQAFGMKVIGFDP-MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEV 174
           ++ FG  ++  D   ++ E   +     +  L ++ P  D I ++ PL  +T+ + N E+
Sbjct: 183 LKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKEL 242

Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           + K KKGV +VN ARG I++  A++D+++ GH GG + DV+  +P   +        P  
Sbjct: 243 IGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDH--PWRYMPNQ 300

Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
            +TPH   +T +AQ+R A    +          
Sbjct: 301 AMTPHTSGTTIDAQLRYAAGTKDMLERYFKGED 333

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  378 bits (972), Expect = e-131
 Identities = 86/300 (28%), Positives = 138/300 (46%), Gaps = 12/300 (4%)

Query: 2   YDGLVVRS--DTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
            D ++ +      +T E +  A NL++   AG G D++DL +A  + V V      N IS
Sbjct: 90  ADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSIS 149

Query: 59  ACELTCSLISALSRNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALR 116
             E    +I +L RN     +  ++G W+    +    +L    +  +  GRIG  V  R
Sbjct: 150 VAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRR 209

Query: 117 MQAFGMKVIGFDPMVSVEDAAK-LNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEV 174
           +  F + +   D     E   K LN+      ED++P+ D +T++ PL P+T+++IN E 
Sbjct: 210 LAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDET 269

Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           LK  K+G  +VN ARG + D +A+  +L+ G   G A DV+  +P   +        P  
Sbjct: 270 LKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDH--PWRTMPYN 327

Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNP---QYTSIQGVLNAPALAASRNPENTS 291
            +TPH+  +T  AQ R A    E         P   +Y  +QG   A   A S +  N +
Sbjct: 328 GMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALAGTGAHSYSKGNAT 387

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  376 bits (968), Expect = e-131
 Identities = 76/282 (26%), Positives = 117/282 (41%), Gaps = 14/282 (4%)

Query: 2   YDGLVVRSD--TKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKG--VLVLNAPGGNF 56
            D ++        +T E +  A  L++V  AG G D+IDL    + G  + VL   G N 
Sbjct: 61  ADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNV 120

Query: 57  ISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT--GTELYGKTLAVLGLGRIGREVA 114
           +S  E     +  L RN     + +    W+         ++ GKT+A +G GRIG  V 
Sbjct: 121 VSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVL 180

Query: 115 LRMQAFGMKVIGFDP--MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLIN 171
            R+  F  K + +     +  +   K+    +  +E++   AD +TV+ PL   TK LIN
Sbjct: 181 ERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLIN 240

Query: 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQ---TFEL 228
            E+L K KKG  +VN ARG I     +  +L+ G   G   DV+  +P   +        
Sbjct: 241 KELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRN 300

Query: 229 IKHPKVIVTPHLGASTKEAQIRVAVEIAEQFI-ALANTNPQY 269
                  +TPH   +T +AQ R A                  
Sbjct: 301 KYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDYR 342

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  374 bits (962), Expect = e-130
 Identities = 85/289 (29%), Positives = 143/289 (49%), Gaps = 14/289 (4%)

Query: 2   YDGLVVRSDTKVTAEVLQ-ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
           +DG++V   TK+T EVL+ A  L+V+     G DNIDL  AT++G+ V    G    +  
Sbjct: 43  FDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVA 102

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYT------GTELYGKTLAVLGLGRIGREVA 114
           E T  LI  L R +    + ++ G+W+              LYGK + +LG+G IG+ +A
Sbjct: 103 EFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIA 162

Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
            R+  FG+K+  +     V    +L    + ++++   +D + +  PL   T ++IN E 
Sbjct: 163 RRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEER 222

Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           +KK  +G  +VN+ RG +VDE A+ +++K G   G A DVF +EP +  + F+     + 
Sbjct: 223 VKKL-EGKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKY--EWET 279

Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAA 283
           ++TPH      EAQ  V     E  + +          + ++N   L  
Sbjct: 280 VLTPHYAGLALEAQEDVGFRAVENLLKVLRGEV----PEDLVNKEVLEV 324

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  369 bits (950), Expect = e-129
 Identities = 66/268 (24%), Positives = 124/268 (46%), Gaps = 16/268 (5%)

Query: 1   KYDGLVVR----SDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGN 55
            +D         ++ +V  +        +++     GVD+ID+       VL  NA    
Sbjct: 23  GFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGVDHIDVNGIPENVVLCSNAGA-Y 81

Query: 56  FISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVAL 115
            IS  E   +L+ A ++N+ +  + +K G + +     T LYGK L +LG G IGR VA 
Sbjct: 82  SISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGYGGIGRRVAH 139

Query: 116 RMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
             +AFGM+VI +           +++ S    D++  +D++ +  PL  +T+ ++N+ +L
Sbjct: 140 LAKAFGMRVIAYTRSSV---DQNVDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLL 196

Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
              +K + +VNVAR  +V +  ++  LK         DV+  EP  +E           I
Sbjct: 197 ANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL-----RNAI 251

Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALA 263
           ++PH+        + +A+++A + +   
Sbjct: 252 LSPHVAGGMSGEIMDIAIQLAFENVRNF 279

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  361 bits (928), Expect = e-124
 Identities = 73/309 (23%), Positives = 128/309 (41%), Gaps = 33/309 (10%)

Query: 2   YDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
            D L+VRS T+V+   L  S ++ VG    G D++DL      G+   +APG N     +
Sbjct: 38  VDVLLVRSVTEVSRAALAGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVD 97

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
                + A++                     G +L  +T  V+G G++G  +   ++  G
Sbjct: 98  YVLGCLLAMAE------------------VRGADLAERTYGVVGAGQVGGRLVEVLRGLG 139

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQ----TKNLINAEVLKK 177
            KV+  DP      A + +   + LE +   AD I++HTPL       T++L++   L  
Sbjct: 140 WKVLVCDPP---RQAREPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAA 196

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
            + G  +VN +RG +VD  AL   L+ G     ALDV+  EP         +    +I T
Sbjct: 197 LRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQAD----PELAARCLIAT 252

Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLAR 297
           PH+   + E ++R   +I + + A      + +    + +          +       A 
Sbjct: 253 PHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVS----LQDVLPETWLAGLQLNPGCDPAW 308

Query: 298 SLGKISSQL 306
           +L  +   +
Sbjct: 309 ALATLCRAV 317

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  351 bits (904), Expect = e-121
 Identities = 91/300 (30%), Positives = 144/300 (48%), Gaps = 25/300 (8%)

Query: 2   YDGLV-VRSDTKVTAEVL-QASNLQVVGRAG----TGVDNIDLTAATRKGVLVLNAPGGN 55
            + LV +R  T+VT ++L +   L+++ + G        +IDL A T KGV+VL   G +
Sbjct: 49  VEALVLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKG-S 107

Query: 56  FISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT----------GTELYGKTLAVLG 105
            ++  ELT +L+ A  R +PQ   SLK G W +              G  L G+TL + G
Sbjct: 108 PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFG 167

Query: 106 LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIP 164
            G+IG+ VA   +AFGM V+ +    S E A     A     + ++  +D ++VH  L  
Sbjct: 168 YGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLND 227

Query: 165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQ 224
           +T+++I    L + K     VN +R  +V+EN ++ +L  G  G AA+DVF  EP    Q
Sbjct: 228 ETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPIL--Q 285

Query: 225 TFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAAS 284
              L++    I TPH+G   +E+         +  + +   N        V N  ALA +
Sbjct: 286 GHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGNVDS-----VANPTALAPA 340

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  349 bits (897), Expect = e-120
 Identities = 77/305 (25%), Positives = 130/305 (42%), Gaps = 30/305 (9%)

Query: 2   YDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACE 61
            D L+VRS TKV   +L  + +  VG A  G D++D     + G+    APG N I+  E
Sbjct: 41  ADALMVRSVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVE 100

Query: 62  LTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG 121
              S +  L+                     G  L  +T+ ++G+G +G  +  R++A G
Sbjct: 101 YVFSALLMLAER------------------DGFSLRDRTIGIVGVGNVGSRLQTRLEALG 142

Query: 122 MKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIP----QTKNLINAEVLKK 177
           ++ +  DP      A         L+++   AD +T HTPL      +T +L +  ++++
Sbjct: 143 IRTLLCDPP---RAARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRR 199

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
            K G  ++N  RG +VD  ALL  L  G      LDV+  EP  +     L++    I T
Sbjct: 200 LKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNV---ALLEAVD-IGT 255

Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLAR 297
            H+   T E + R   ++ E + A      +  +++ +L AP              +L R
Sbjct: 256 SHIAGYTLEGKARGTTQVFEAYSAFIGREQRV-ALETLLPAPEFGRITLHGPLDQPTLKR 314

Query: 298 SLGKI 302
               +
Sbjct: 315 LAHLV 319

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  316 bits (812), Expect = e-107
 Identities = 74/294 (25%), Positives = 127/294 (43%), Gaps = 21/294 (7%)

Query: 2   YDGLVVRSDTKVTAEVLQ---ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
           +DG+     T   A V +   A  ++ +     G DNID+TA  + G+ + N P  +  +
Sbjct: 45  FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAA 104

Query: 59  ACELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRM 117
             E   +    L RN+ +    L+ G +++   + G EL  +T+ V+G G IG+      
Sbjct: 105 IAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLF 164

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           + FG KVI +DP          +   + LED++  +D I +H P I Q  ++IN      
Sbjct: 165 KGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNL 222

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-----KSEQTFE----- 227
            K G  V+N AR  ++D  A+L +LK G   G  +D +  E           +F+     
Sbjct: 223 MKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWD 282

Query: 228 -LIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPA 280
            L+  P V+++PH+   T+ A   +     +  +               +  PA
Sbjct: 283 ELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGE----TSTEVTGPA 332

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  316 bits (811), Expect = e-107
 Identities = 77/280 (27%), Positives = 123/280 (43%), Gaps = 15/280 (5%)

Query: 2   YDGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
            DG+VV       AE LQA   + +  +     GVDNID+  A   G  + N P  +  +
Sbjct: 47  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNA 106

Query: 59  ACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQ 118
             E      + + R      + +           G E+  + + V+G G IG+     M+
Sbjct: 107 IAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIME 166

Query: 119 AFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
            FG KVI +D   +  +  K       L+D++  AD I++H P +P   ++IN E + K 
Sbjct: 167 GFGAKVITYDIFRN-PELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKM 225

Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-----KSEQTF------E 227
           K+ V +VNV+RG +VD +A++  L  G   G A+DV+  E          + F      +
Sbjct: 226 KQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLAD 285

Query: 228 LIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
           LI  P V+VTP     T  A   + V+  +  + L     
Sbjct: 286 LIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKE 325

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  314 bits (806), Expect = e-106
 Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 10/278 (3%)

Query: 2   YDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
              ++     +V A+ LQA   L+V+G A  G DN D+ A T +GV +   P    +   
Sbjct: 46  AQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTA 105

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWD--RKLYTGTELYGKTLAVLGLGRIGREVALRMQ 118
           EL   L   L R++      ++ GK+   +  + GT L   T+  LG+G IG  +A R+Q
Sbjct: 106 ELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQ 165

Query: 119 AFGMKVIGFDP-MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
            +G  +   +   +  +   +L +  +   +++  +D+I +  PL   T +L+NAE+L  
Sbjct: 166 GWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLAL 225

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTF-----ELIKHP 232
            + G  +VN  RG +VDE A+L +L+ G  GG A DVF  E              L+ HP
Sbjct: 226 VRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHP 285

Query: 233 KVIVTPHLGASTKEAQIRVAVEIAEQFIA-LANTNPQY 269
             + TPH+G++ +  ++ +    A+  +  LA   P  
Sbjct: 286 NTLFTPHIGSAVRAVRLEIERCAAQNILQALAGERPIN 323

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  307 bits (788), Expect = e-104
 Identities = 71/282 (25%), Positives = 118/282 (41%), Gaps = 18/282 (6%)

Query: 2   YDGLVVRSDTKVTAEVLQA---SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
           +D +++R +     + L       ++ +     G D+ID   A   G  +   P  +  +
Sbjct: 46  FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNA 105

Query: 59  ACELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRM 117
             EL  +    L R+         +  +         E+   T+ V+GLGRIGR  A   
Sbjct: 106 IAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIF 165

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
              G  VIG D         +     + L+++   +D IT+H P I +   ++  + LKK
Sbjct: 166 HGMGATVIGEDVFEI--KGIEDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKK 223

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-----KSEQTFE----- 227
            K G  +VN ARG +VD  A++++++ G  GG   DV   E          Q  E     
Sbjct: 224 MKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFE 283

Query: 228 --LIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
             +  +P+V++TPHLG+ T EA   +     +    LA T  
Sbjct: 284 KLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGD 325

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  294 bits (754), Expect = 7e-99
 Identities = 96/277 (34%), Positives = 155/277 (55%), Gaps = 12/277 (4%)

Query: 2   YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
            D LV     ++  EV   A  L++V     G DNID+  AT++G+ V N P     +  
Sbjct: 46  VDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATA 105

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRK-------LYTGTELYGKTLAVLGLGRIGREV 113
           +L  +L+ A +R+V +G + ++ G+W ++        + G ++YGKT+ ++GLGRIG+ +
Sbjct: 106 DLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAI 165

Query: 114 ALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE 173
           A R + F M+++ +      E   +LN     LED+   +D++ +  PL  +T +LIN E
Sbjct: 166 AKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEE 225

Query: 174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK 233
            LK  KK   ++N+ARG +VD NAL+ +LK G   GA LDVF EEP  +E   EL K   
Sbjct: 226 RLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNE---ELFKLDN 282

Query: 234 VIVTPHLGASTKEAQIRVAVEIAEQFIA-LANTNPQY 269
           V++TPH+G+++  A+  +A  +A+  IA      P  
Sbjct: 283 VVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPT 319

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  286 bits (735), Expect = 2e-96
 Identities = 61/270 (22%), Positives = 104/270 (38%), Gaps = 10/270 (3%)

Query: 1   KYDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
               +     +++TAE L +   L+ +     G+D++   +     V V    G N  + 
Sbjct: 28  DLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAV 86

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
            E   +L+ A  + + Q  + +K G + R +     + G+ +AVLGLG IG  V   + A
Sbjct: 87  AEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAA 145

Query: 120 FGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK 179
            G +V GF            N     LE+    A       PL   T+ L+  + L    
Sbjct: 146 LGAQVRGFSRTPKEGPWRFTN----SLEEALREARAAVCALPLNKHTRGLVKYQHLALMA 201

Query: 180 KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
           +    VNV R  ++D + +L  LK       A DV+      ++   E    P V+ TP 
Sbjct: 202 EDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDA-EFFSLPNVVATPW 260

Query: 240 LGAST--KEAQIRVAVEIAEQFIALANTNP 267
           +      +    ++ +E     I  A    
Sbjct: 261 VAGGYGNERVWRQMVMEAVRNLITYATGGR 290

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  263 bits (675), Expect = 4e-87
 Identities = 74/273 (27%), Positives = 125/273 (45%), Gaps = 10/273 (3%)

Query: 2   YDGLVVRSDTKVTAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
            D L++  + K   EV+     N++ +     G D+IDL A   +G+ V NAP G  ++ 
Sbjct: 45  VDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVAT 104

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALR 116
            E+   L+   +R   +G + ++   W         G +L  KTL + G G IG+ +A R
Sbjct: 105 AEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKR 164

Query: 117 MQAFGMKVIGFDP-MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEV 174
            Q F M +  FD    S  D A         L+ +  ++ + +++ P  P+T+   N   
Sbjct: 165 AQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKAT 224

Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           +K   +G  VVN ARG +VD   ++ +L+ G    A  DVF  EP  +E        P  
Sbjct: 225 IKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINE---GYYDLPNT 281

Query: 235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
            + PH+G++  +A+  +A +  +   AL     
Sbjct: 282 FLFPHIGSAATQAREDMAHQANDLIDALFGGAD 314

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  263 bits (674), Expect = 4e-87
 Identities = 93/270 (34%), Positives = 148/270 (54%), Gaps = 12/270 (4%)

Query: 2   YDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
             GL+   + ++ AEV+ +A  L+V+     GVD++DL AA  +G+ V + PG    +  
Sbjct: 44  AVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATA 103

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALRM 117
           +LT +L+ A++R V +G    ++G W     +L  G +L G TL ++G+GRIG+ VA R 
Sbjct: 104 DLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA 163

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
            AFGM+V+             L    L LE++   AD +++HTPL P+T  L+N E L  
Sbjct: 164 LAFGMRVVYHAR-----TPKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFA 218

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
            K+G  ++N ARG +VD  AL+++L+ GH  GA LDV   EP        L   P  ++T
Sbjct: 219 MKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGH--PLYALPNAVIT 275

Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNP 267
           PH+G++ +  + R+A    E  +A+     
Sbjct: 276 PHIGSAGRTTRERMAEVAVENLLAVLEGRE 305

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  258 bits (661), Expect = 7e-85
 Identities = 64/263 (24%), Positives = 110/263 (41%), Gaps = 3/263 (1%)

Query: 6   VVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTC 64
           +  +   +   +    + L+ V     GVD + L A    GV+V N  G +  +  E   
Sbjct: 44  MYGNHPLLKTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVL 103

Query: 65  SLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKV 124
           + + ++ R       + +  +      T + L G+ L + G G+IG+ +A +  A GM V
Sbjct: 104 AAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHV 163

Query: 125 IGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRV 184
           IG +      D     +A     D    A++I    PL P T +L + E+ ++ K+   +
Sbjct: 164 IGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPML 223

Query: 185 VNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAST 244
           +N+ RG  VD  AL+ +L       AALDV   EP  ++    L +   V++TPH+    
Sbjct: 224 INIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDH--PLWQRDDVLITPHISGQI 281

Query: 245 KEAQIRVAVEIAEQFIALANTNP 267
              +  V    A  F        
Sbjct: 282 AHFRATVFPIFAANFAQFVKDGT 304

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  245 bits (627), Expect = 2e-79
 Identities = 71/283 (25%), Positives = 120/283 (42%), Gaps = 21/283 (7%)

Query: 1   KYDGLVVRSDTKVT------AEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAP 52
            ++ ++  +    T      A+++    S+L+V   AG G D +DL A   +GV   N+ 
Sbjct: 51  DFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSR 110

Query: 53  GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYT-------GTELYGKTLAVLG 105
           G    +  +L   LI ++ R      ++ + G  +                 G  L  +G
Sbjct: 111 GAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVG 170

Query: 106 LGRIGREVALR-MQAFGMKVIGFDP-MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPL 162
           LG I +E+A + +   GMK++ +D      E    L    +  LE++   +D ++V  P 
Sbjct: 171 LGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPY 230

Query: 163 IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS 222
           +  T +LI+       K G R+VN ARG ++ ++AL+ +LK G    A LDV   EP  S
Sbjct: 231 MKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVS 290

Query: 223 EQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANT 265
           +   ELI+   V +T H+G    E                   
Sbjct: 291 K---ELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQ 330

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  243 bits (623), Expect = 4e-79
 Identities = 70/272 (25%), Positives = 128/272 (47%), Gaps = 8/272 (2%)

Query: 2   YDGLVVRSDTKVTAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
             GL+      V   +L A  +NL+V+     G+D++ L    ++G+ V   P     + 
Sbjct: 54  AHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTT 113

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALR 116
            EL  SL+    R +P+  + +K G W         G  L   T+ ++GLGRIG+ +A R
Sbjct: 114 AELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARR 173

Query: 117 MQAFGMKVIGFD-PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL 175
           ++ FG++   +       E+AA+     +   ++   +D+I V   L P T+ L N +  
Sbjct: 174 LKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFF 233

Query: 176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI 235
           +K K+    +N++RG +V+++ L  +L  G    A LDV   EP  +     L+     +
Sbjct: 234 QKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNH--PLLTLKNCV 291

Query: 236 VTPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
           + PH+G++T   +  +++  A   +A     P
Sbjct: 292 ILPHIGSATHRTRNTMSLLAANNLLAGLRGEP 323

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  235 bits (601), Expect = 1e-75
 Identities = 67/271 (24%), Positives = 127/271 (46%), Gaps = 8/271 (2%)

Query: 2   YDGLVVRSDTKVTAEVLQA--SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
            + L V +   +TAEV++     L+ +     G D+ID+ AA   G+ VL+ P     + 
Sbjct: 72  AEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDAC 131

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALR 116
            E+   L+    R   +  + ++ G W         G  L G+ L + G+GRIGR +A R
Sbjct: 132 AEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATR 191

Query: 117 MQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176
            + FG+ +   +         +  I    L+ +   +D   +  P  P+ K  ++ + + 
Sbjct: 192 ARGFGLAIHYHNRTRLSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIA 251

Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV 236
           K  +G  V+N++RG +++++AL+++L+  H   A LDVF  EP              + +
Sbjct: 252 KIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDP---RYRSLDNIFL 308

Query: 237 TPHLGASTKEAQIRVAVEIAEQFIALANTNP 267
           TPH+G++T E +  +   + +   AL  ++ 
Sbjct: 309 TPHIGSATHETRDAMGWLLIQGIEALNQSDV 339

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  217 bits (556), Expect = 5e-69
 Identities = 76/249 (30%), Positives = 118/249 (47%), Gaps = 8/249 (3%)

Query: 1   KYDGLVVRSDTKVTAEVLQA-SNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
               +V  S+    AE++ A   L++V     G+D +DL     KGV V N P       
Sbjct: 65  SIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDV 124

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYT-GTELYGKTLAVLGLGRIGREVALRMQ 118
            +L   LI A+ R + +  + ++ G W    +   T+  GK + ++GLGRIG  VA R +
Sbjct: 125 ADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAE 184

Query: 119 AFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
           AF   +  F       +       S+   ++   +D + V  PL P+T ++IN EV+   
Sbjct: 185 AFDCPISYFSRS-KKPNTNYTYYGSV--VELASNSDILVVACPLTPETTHIINREVIDAL 241

Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP 238
                ++N+ RG  VDE  L+ +L  G  GGA LDVF  EP   E   +L     V++ P
Sbjct: 242 GPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPE---KLFGLENVVLLP 298

Query: 239 HLGASTKEA 247
           H+G+ T E 
Sbjct: 299 HVGSGTVET 307

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  217 bits (556), Expect = 6e-69
 Identities = 77/250 (30%), Positives = 123/250 (49%), Gaps = 9/250 (3%)

Query: 1   KYDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
               +       ++ E + +  +L ++   G G D +DL  A R+ + V   PG      
Sbjct: 71  SIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDV 130

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYT--GTELYGKTLAVLGLGRIGREVALRM 117
            +L  +L+ A+ R V  G + ++EG+W        G    GK + VLGLG+IGR +A R 
Sbjct: 131 ADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRA 190

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           +AFGM V  ++   ++     +   S    D+   +D + V       T+N+++A +L+ 
Sbjct: 191 EAFGMSVRYWNRS-TLSGVDWIAHQSP--VDLARDSDVLAVCVAASAATQNIVDASLLQA 247

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT 237
                 VVNVARG +VDE+AL+++LK G   GA LDVF  EP       E    P  ++ 
Sbjct: 248 LGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRS---EFHTTPNTVLM 304

Query: 238 PHLGASTKEA 247
           PH G++T E 
Sbjct: 305 PHQGSATVET 314

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  186 bits (474), Expect = 7e-57
 Identities = 74/259 (28%), Positives = 109/259 (42%), Gaps = 27/259 (10%)

Query: 19  QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC 78
           +A+ L        GVD + L A  R+   + N  G       E     + +L R +P   
Sbjct: 64  KANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYR 122

Query: 79  QSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG----------FD 128
           +  K+  W    Y    L G+TL +LG G IG+ +A   + FGMKV+G          FD
Sbjct: 123 EQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFD 180

Query: 129 PMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
            +  +            L  +   AD I    P   +T +L  A   + CK G  + NV 
Sbjct: 181 QVYQLPA----------LNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVG 230

Query: 189 RGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ 248
           RG  ++E  LL +L+ G  G A LDVF +EP  ++    L   P +I+TPH  A +    
Sbjct: 231 RGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADS--PLWGQPNLIITPHNSAYSFPD- 287

Query: 249 IRVAVEIAEQFIALANTNP 267
             VA      +I   +  P
Sbjct: 288 -DVAQIFVRNYIRFIDGQP 305

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  175 bits (447), Expect = 5e-53
 Identities = 65/270 (24%), Positives = 97/270 (35%), Gaps = 34/270 (12%)

Query: 15  AEVLQASNLQVVGRAGTGVDNIDLTAATR-----KGVLVLNAPGGNFISA-CELTCSLIS 68
            E+L    L+ V   G GVD I              + +             E   S + 
Sbjct: 52  VEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVL 111

Query: 69  ALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-- 126
              R          +  W             ++ ++G G +G +VA  +QA+G  +    
Sbjct: 112 HWFRRFDDYQALKNQALWKPLPEY--TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWS 169

Query: 127 --------FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC 178
                    +  V  E           L         +    P   QT  +IN+E+L + 
Sbjct: 170 RSRKSWPGVESYVGRE----------ELRAFLNQTRVLINLLPNTAQTVGIINSELLDQL 219

Query: 179 KKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP-PKSEQTFELIKHPKVIVT 237
             G  V+N+ARG  V E  LL +L  G   GA LDVF +EP P+      L +HP+V +T
Sbjct: 220 PDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESP---LWRHPRVAMT 276

Query: 238 PHLGASTKEAQIRVAVEIAEQFIALANTNP 267
           PH+ A T+ A       I+     L    P
Sbjct: 277 PHIAAVTRPA--EAIDYISRTITQLEKGEP 304

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 76.1 bits (187), Expect = 6e-16
 Identities = 28/124 (22%), Positives = 45/124 (36%), Gaps = 11/124 (8%)

Query: 92  TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD-PMVSVEDAAKLNIASLGLEDI- 149
           T   ++G  +AVLGLGR+G  VA +  A G KV         +   A++ +    +    
Sbjct: 149 TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAA 208

Query: 150 --WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG--GIVDENALLDSLKCG 205
                 D      P       ++ A VL +      V+++A    G     A    +K  
Sbjct: 209 QELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKAL 263

Query: 206 HCGG 209
              G
Sbjct: 264 LVPG 267

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 59/360 (16%), Positives = 92/360 (25%), Gaps = 146/360 (40%)

Query: 1   KYDGLVVRSDTKVTA--EVLQ----ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNA--- 51
           KY+  V R         + L     A N+ + G  G+G           K  + L+    
Sbjct: 128 KYN--VSRLQ-PYLKLRQALLELRPAKNVLIDGVLGSG-----------KTWVALDVCLS 173

Query: 52  -------PGGNF---ISACELTCSLISAL-----------------SRNVPQGCQSLKEG 84
                      F   +  C    +++  L                 S N+     S++  
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA- 232

Query: 85  KWDRKLYTGTELYGKTLAVLGLGRIGREV--ALRMQAFGMK----VIGFDPMVSVEDAAK 138
              R+L   ++ Y   L VL        V  A    AF +     +        V D   
Sbjct: 233 -ELRRLLK-SKPYENCLLVL------LNVQNAKAWNAFNLSCKILLTTRF--KQVTDF-- 280

Query: 139 LNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL 198
                        L+   T H  L   +  L   EV                      +L
Sbjct: 281 -------------LSAATTTHISLDHHSMTLTPDEVK---------------------SL 306

Query: 199 LDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQ 258
           L  LK   C    L      P +   T     +P+ +    +  S ++            
Sbjct: 307 L--LKYLDCRPQDL------PREVLTT-----NPRRLSI--IAESIRDGLATW------D 345

Query: 259 FIALANTNPQYTSIQGVLNA--PALAASRN--------PENTSWISLARSLGKISSQLLQ 308
                N +   T I+  LN   PA    R         P +            I + LL 
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAE--YRKMFDRLSVFPPSA----------HIPTILLS 393

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 42/269 (15%), Positives = 72/269 (26%), Gaps = 94/269 (34%)

Query: 1   KY-DGLVVRSDTKV-TAEVLQASNLQ----VVGRAGTGVDNIDLTAATRKGVLVLNAPGG 54
            Y + L+V  +  V  A+   A NL     +  R     D   L+AAT   + + +    
Sbjct: 242 PYENCLLVLLN--VQNAKAWNAFNLSCKILLTTRFKQVTD--FLSAATTTHISLDHHSMT 297

Query: 55  -----------NFIS---------ACE---LTCSLISALSRNVPQGCQSLKEGKWDRKLY 91
                       ++                   S+I+   R+            WD   +
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL--------ATWDNWKH 349

Query: 92  TGTELYGKT----LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLE 147
              +         L VL       E A   + F    + F        A   +I ++ L 
Sbjct: 350 VNCDKLTTIIESSLNVL-------EPAEYRKMFDRLSV-FP-----PSA---HIPTILLS 393

Query: 148 DIWPLADYITVHTPLIPQTKNLINAEVLKKC-KKGVRVVNVARGGIVDENALLDSLKCGH 206
            IW       V               V+ K  K  +    V +           S+    
Sbjct: 394 LIWFDVIKSDV-------------MVVVNKLHKYSL----VEK----QPKESTISI---P 429

Query: 207 CGGAALDVFCEEPPKSEQTFELIKHPKVI 235
                  ++ E   K E  + L  H  ++
Sbjct: 430 ------SIYLELKVKLENEYAL--HRSIV 450

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 15/112 (13%)

Query: 92  TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN------IASLG 145
           T   ++G  +AVLGLGR G  +A    A G  V       S    A++         +  
Sbjct: 151 TDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGA--RSSAHLARITEMGLVPFHTDE 208

Query: 146 LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA--RGGIVDE 195
           L++     D   ++T  IP    ++N  VL        ++++A   GG   +
Sbjct: 209 LKEHVKDIDIC-INT--IP--SMILNQTVLSSMTPKTLILDLASRPGGTDFK 255

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 40.0 bits (93), Expect = 5e-04
 Identities = 14/90 (15%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 98  GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPM-VSVEDAAKLNIASLGLEDIWPLADY 155
            KT+A+LG  G++G  +  ++      +   +      +    + I     +     AD 
Sbjct: 11  PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70

Query: 156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
           + +  P     K  +  +++ + + G  V+
Sbjct: 71  VVLALPDNIIEK--VAEDIVPRVRPGTIVL 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	333
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.94
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.93
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.91
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.83
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.79
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.78
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.75
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.74
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.72
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.7
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.67
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.48
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.47
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.46
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.45
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.43
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.42
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.42
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.42
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.4
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.39
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.38
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.37
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.36
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.36
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.34
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.32
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.32
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.3
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.28
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.27
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.26
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.23
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.23
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.21
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.21
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.19
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.18
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.18
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.18
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.17
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.16
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.16
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.16
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	99.16
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.15
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.15
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.15
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.13
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.12
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.11
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.11
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.68
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.09
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.06
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.06
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.05
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	99.0
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	99.0
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.99
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.99
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.95
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.92
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.91
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.9
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.85
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.84
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.82
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.82
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.81
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.79
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.78
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.78
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.76
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.75
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.73
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	98.71
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.7
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.66
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.66
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.65
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	98.63
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.63
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.62
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.61
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.6
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	98.6
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.59
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.59
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.59
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.58
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.56
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	98.55
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.55
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	98.54
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.54
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.53
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.52
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.5
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.46
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	98.46
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.46
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.45
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	98.43
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.41
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	98.39
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	98.38
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	98.31
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.3
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	98.3
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.28
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	98.28
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.27
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	98.26
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.26
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.23
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.21
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.21
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.21
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.21
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.2
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.2
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.2
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.18
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.16
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.15
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	98.14
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.13
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.12
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.11
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	98.06
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	98.06
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	98.04
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	98.03
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	98.03
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.03
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.02
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.01
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	98.0
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.97
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	97.89
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.88
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.85
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.85
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.85
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.84
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	97.82
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.82
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.79
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	97.78
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.76
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.75
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	97.75
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.73
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.73
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.72
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	97.72
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.71
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.7
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.69
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	97.67
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	97.65
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	97.65
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.65
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	97.64
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.64
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	97.62
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	97.61
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.61
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.61
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	97.61
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.6
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.6
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	97.58
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.58
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.58
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	97.54
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.53
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.52
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.52
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.5
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	97.48
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.46
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.44
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	97.44
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	97.43
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	97.42
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.42
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	97.42
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.38
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.38
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.37
1ydw_A	362	AX110P-like protein; structural genomics, protein	97.37
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.37
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.37
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	97.36
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.34
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.33
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.32
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.29
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	97.29
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.28
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	97.28
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	97.28
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.26
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.24
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	97.21
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	97.21
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	97.21
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.18
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	97.17
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.16
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.16
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	97.16
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	97.15
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.15
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.14
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	97.14
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	97.13
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.13
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	97.12
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.11
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.11
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	97.11
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.1
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.09
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.07
4had_A	350	Probable oxidoreductase protein; structural genomi	97.06
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	97.05
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	97.04
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	97.04
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	97.02
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	97.02
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	97.02
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	97.02
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.99
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.99
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.97
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	96.95
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	96.94
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.93
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	96.93
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.92
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	96.92
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	96.9
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.9
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.87
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.87
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.86
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.85
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.85
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.84
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.84
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	96.84
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.84
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.84
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	96.83
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.83
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.82
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.81
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	96.8
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.78
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	96.75
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	96.74
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.74
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	96.72
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.72
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.71
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.71
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	96.7
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.69
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	96.69
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	96.69
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	96.68
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	96.68
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.67
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.67
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.65
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	96.64
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.64
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.64
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	96.64
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	96.63
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	96.63
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	96.59
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	96.59
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	96.57
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.56
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.55
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.55
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.55
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.54
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.54
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.54
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	96.54
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.53
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.53
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	96.53
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	96.53
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	96.52
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.5
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	96.49
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.49
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.49
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	96.48
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	96.48
4h3v_A	390	Oxidoreductase domain protein; structural genomics	96.47
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.47
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	96.47
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	96.47
1lnq_A	336	MTHK channels, potassium channel related protein;	96.46
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	96.46
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.45
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.45
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	96.45
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.43
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.43
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.42
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.42
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.41
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.41
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	96.4
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.39
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.37
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.36
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.34
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	96.33
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.32
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	96.3
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.3
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	96.3
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.29
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.29
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	96.29
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.28
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.27
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	96.26
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.26
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.23
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.23
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	96.22
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.21
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	96.21
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.2
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	96.2
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	96.19
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.18
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	96.18
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.15
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.11
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	96.1
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.1
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.06
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.06
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.04
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.03
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.02
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.01
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	96.0
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	96.0
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.0
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	95.99
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	95.98
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.96
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.96
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.95
3on5_A	362	BH1974 protein; structural genomics, joint center	95.94
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	95.93
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.93
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.93
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.93
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	95.93
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.92
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.9
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	95.89
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.86
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.85
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.82
1xgk_A	352	Nitrogen metabolite repression regulator NMRA; ros	95.8
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.8
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.78
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	95.77
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.77
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.75
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.74
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.73
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.7
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	95.7
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.69
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	95.68
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	95.67
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.63
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.63
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.63
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.58
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	95.58
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.56
3ruf_A	351	WBGU; rossmann fold, UDP-hexose 4-epimerase, isome	95.54
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.54
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.53
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.52
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	95.52
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.51
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	95.49
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.46
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	95.44
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.44
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	95.43
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.43
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	95.42
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.42
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.42
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.41
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.41
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.4
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.37
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	95.36
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	95.35
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	95.33
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.32
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.32
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.32
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	95.31
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	95.31
2z1m_A	345	GDP-D-mannose dehydratase; short-chain dehydrogena	95.3
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.3
4id9_A	347	Short-chain dehydrogenase/reductase; putative dehy	95.29
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.28
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.26
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	95.23
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	95.21
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	95.19
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	95.18
3nrc_A	280	Enoyl-[acyl-carrier-protein] reductase (NADH); ros	95.18
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.18
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	95.17
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	95.17
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.16
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.12
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	95.09
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	95.09
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	95.09
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	95.08
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.08
3nkl_A	141	UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo	95.07
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.03
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.99
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.97
2pzm_A	330	Putative nucleotide sugar epimerase/ dehydratase;	94.9
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	94.88
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	94.82
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.81
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.81
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	94.8
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.78
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	94.77
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	94.77
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	94.73
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.72
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	94.68
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	94.62
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	94.59

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=4.1e-70  Score=537.56  Aligned_cols=316  Identities=31%  Similarity=0.451  Sum_probs=276.0

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||+++++|+++|+++++++
T Consensus        58 ~~d~l~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~  137 (416)
T 3k5p_A           58 SAHIIGIRSRTQLTEEIFAAANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSV  137 (416)
T ss_dssp             TCSEEEECSSCCBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEEcCCCCCCHHHHHhCCCcEEEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHH
Confidence            5899999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc-ccChhhhccCCCEEEE
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-SLGLEDIWPLADYITV  158 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~-~~~l~ell~~aDvV~l  158 (333)
                      .+++|.|.+..+.+.+++|||+||||+|+||+.+|+++++|||+|++||++....   ..+.. ..++++++++||+|++
T Consensus       138 ~~~~g~W~~~~~~~~el~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~---~~~~~~~~sl~ell~~aDvV~l  214 (416)
T 3k5p_A          138 SAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQ---YGNVKPAASLDELLKTSDVVSL  214 (416)
T ss_dssp             HHHTTCCCCCCTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCC---BTTBEECSSHHHHHHHCSEEEE
T ss_pred             hhhcccccccCCCCccCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhc---ccCcEecCCHHHHHhhCCEEEE
Confidence            9999999987777899999999999999999999999999999999999875321   11233 3489999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC--ccchhhcCCCcEEE
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS--EQTFELIKHPKVIV  236 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~--~~~~~L~~~pnvi~  236 (333)
                      |+|++++|+++|+++.|+.||+|++|||+|||+++|+++|++||++|+++||+||||++||++.  ++.+||+++|||++
T Consensus       215 hvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvil  294 (416)
T 3k5p_A          215 HVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVIL  294 (416)
T ss_dssp             CCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEE
T ss_pred             eCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999653  23479999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcc---------cCCCCCchHHHHHHHhHHHHHHh
Q psy6348         237 TPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAAS---------RNPENTSWISLARSLGKISSQLL  307 (333)
Q Consensus       237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~---------~~~~~~~~~~l~~~~g~~~~~~~  307 (333)
                      |||+|++|.|++.+++..+++|+.+|..++    .+.+.||.|.++..         ..+++.|.     .++++-.-+.
T Consensus       295 TPHig~~T~ea~~~~~~~~~~nl~~~l~~g----~~~~~Vn~p~~~~~~~~~~~r~~~~h~n~p~-----~~~~i~~~~~  365 (416)
T 3k5p_A          295 TPHIGGSTEEAQERIGTEVTRKLVEYSDVG----STVGAVNFPQVQLPPRPTGTRFMHVHENRPG-----ILNSLMNVFS  365 (416)
T ss_dssp             CCSCTTCCHHHHHHHHHHHHHHHHHHHHHC----CCTTBSSSCCCCCCCCSSSEEEEEEECCCTT-----HHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHhhC----CCCceeeCCCcCCCCCCCceEEEEEecCCcc-----HHHHHHHHHH
Confidence            999999999999999999999999977555    68999999987643         24578898     4555555443


Q ss_pred             cCC-------CcCCcceeEeeeccCCcc
Q psy6348         308 QTS-------TFSSTAFSLVTQDITNVT  328 (333)
Q Consensus       308 ~~~-------~~~~~~~~~~~~~~~~~~  328 (333)
                      +..       ..+.+.+.|+.-|+.+|+
T Consensus       366 ~~~~ni~~~~~~~~~~~~y~~~d~~~~~  393 (416)
T 3k5p_A          366 HHHINIASQFLQTDGEVGYLVMEADGVG  393 (416)
T ss_dssp             HTTCCEEEEEEEECSSCEEEEEEECCCH
T ss_pred             HcCCCHHHHhccCCCceEEEEEEecCCC
Confidence            332       224578899999998553

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=3.6e-70  Score=526.14  Aligned_cols=265  Identities=31%  Similarity=0.425  Sum_probs=248.0

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||+++++|++.|+++.+++
T Consensus        42 ~ad~i~v~~~~~i~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~  121 (334)
T 3kb6_A           42 KAELISVFVYDKLTEELLSKMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIED  121 (334)
T ss_dssp             HCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHhcCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccc
Confidence            4799999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccc-cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEE
Q psy6348          80 SLKEGKWDR-KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITV  158 (333)
Q Consensus        80 ~~~~g~w~~-~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l  158 (333)
                      .+++|.|.+ ..+.+.+++|||+||||+|+||+.+|+++++|||+|++|||+... ...+.++.+.+++|++++||+|++
T Consensus       122 ~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~-~~~~~~~~~~~l~ell~~sDivsl  200 (334)
T 3kb6_A          122 RVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE-DLKEKGCVYTSLDELLKESDVISL  200 (334)
T ss_dssp             HHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHTTCEECCHHHHHHHCSEEEE
T ss_pred             cccccccccccccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccch-hhhhcCceecCHHHHHhhCCEEEE
Confidence            999999864 345689999999999999999999999999999999999998654 345667888899999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC--cc-----------c
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS--EQ-----------T  225 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~--~~-----------~  225 (333)
                      |+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||.+.  +.           .
T Consensus       201 h~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~  280 (334)
T 3kb6_A          201 HVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKI  280 (334)
T ss_dssp             CCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHH
T ss_pred             cCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999531  11           1


Q ss_pred             hhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         226 FELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       226 ~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      .||+.+|||++|||+|++|.|++.++++.+++||.+|..|+
T Consensus       281 ~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge  321 (334)
T 3kb6_A          281 LELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGD  321 (334)
T ss_dssp             HHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             hhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCC
Confidence            27999999999999999999999999999999999999997

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=4e-69  Score=530.65  Aligned_cols=286  Identities=31%  Similarity=0.474  Sum_probs=252.8

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++|+.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++
T Consensus        47 ~~d~l~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~  126 (404)
T 1sc6_A           47 DAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANA  126 (404)
T ss_dssp             SCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCeEEEEcCCCCCCHHHHhhCCCCcEEEECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHH
Confidence            5899999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEE
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITV  158 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l  158 (333)
                      .+++|.|.+..+.+.+++|||+||||+|+||+.+|+++++|||+|++|||+....   ..++... ++++++++||+|++
T Consensus       127 ~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~~~l~ell~~aDvV~l  203 (404)
T 1sc6_A          127 KAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP---LGNATQVQHLSDLLNMSDVVSL  203 (404)
T ss_dssp             HHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC---CTTCEECSCHHHHHHHCSEEEE
T ss_pred             HHHcCCccccCCCccccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhc---cCCceecCCHHHHHhcCCEEEE
Confidence            9999999877777899999999999999999999999999999999999976322   1134444 89999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC--ccchhhcCCCcEEE
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS--EQTFELIKHPKVIV  236 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~--~~~~~L~~~pnvi~  236 (333)
                      |+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||++.  +..+|||++|||++
T Consensus       204 ~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvil  283 (404)
T 1sc6_A          204 HVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLL  283 (404)
T ss_dssp             CCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEE
T ss_pred             ccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999652  23479999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcc--------cCCCCCchH
Q psy6348         237 TPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAAS--------RNPENTSWI  293 (333)
Q Consensus       237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~--------~~~~~~~~~  293 (333)
                      |||+|++|.|++.+++..+++|+.+|..|+    .+.|+||.|.++..        ..++++|.+
T Consensus       284 TPHi~~~T~ea~~~~~~~~~~nl~~~l~g~----~~~~~vn~p~~~~~~~~~~rl~~~h~d~PGv  344 (404)
T 1sc6_A          284 TPHIGGSTQEAQENIGLEVAGKLIKYSDNG----STLSAVNFPEVSLPLHGGRRLMHIHENRPGV  344 (404)
T ss_dssp             ECCCSCCSHHHHHHHHHHHHHHHHHHHHHC----CCTTBSSSCCCCCCCCSSEEEEEEEESCTTH
T ss_pred             CCCCCCCcHHHHHHHHHHHHHHHHHHHcCC----CCcceecccccccCcCCcceEEEEeCCCCCH
Confidence            999999999999999999999999987766    78999999877643        234678883

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=1.8e-68  Score=515.91  Aligned_cols=269  Identities=25%  Similarity=0.423  Sum_probs=251.2

Q ss_pred             CceEEEEeCCCCCCHHHhccc-C-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQAS-N-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC   78 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~-~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~   78 (333)
                      ++|++++++.+++++++|+++ | ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|++++++
T Consensus        71 ~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~  150 (345)
T 4g2n_A           71 GAEVLFVTATEAITAEVIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEAD  150 (345)
T ss_dssp             TCSEEEECTTSCBCHHHHHHTTTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHH
Confidence            589999998889999999986 6 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCccccc---CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCC
Q psy6348          79 QSLKEGKWDRK---LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLAD  154 (333)
Q Consensus        79 ~~~~~g~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aD  154 (333)
                      +.+|+|+|.+.   .+.|.+|+|||+||||+|+||+.+|+++++|||+|++|||+........ |++++ ++++++++||
T Consensus       151 ~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~-g~~~~~~l~ell~~sD  229 (345)
T 4g2n_A          151 RMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALEE-GAIYHDTLDSLLGASD  229 (345)
T ss_dssp             HHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHT-TCEECSSHHHHHHTCS
T ss_pred             HHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhhc-CCeEeCCHHHHHhhCC
Confidence            99999999753   3468999999999999999999999999999999999999863322222 77776 8999999999


Q ss_pred             EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcE
Q psy6348         155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV  234 (333)
Q Consensus       155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnv  234 (333)
                      +|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||+.+   +|||++|||
T Consensus       230 vV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~---~pL~~~~nv  306 (345)
T 4g2n_A          230 IFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAID---PRYRSLDNI  306 (345)
T ss_dssp             EEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCC---TTGGGCTTE
T ss_pred             EEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCC---chHHhCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999443   799999999


Q ss_pred             EEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       235 i~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                      ++|||+|++|.|++.+++..+++|+.+|..|+    ++.|.|+
T Consensus       307 ilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~----~~~~~V~  345 (345)
T 4g2n_A          307 FLTPHIGSATHETRDAMGWLLIQGIEALNQSD----VPDNLIS  345 (345)
T ss_dssp             EECCSCTTCBHHHHHHHHHHHHHHHHHHHTTC----CCTTBCC
T ss_pred             EEcCccCcCCHHHHHHHHHHHHHHHHHHHcCC----CCCCCcC
Confidence            99999999999999999999999999998887    7777764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=7.3e-68  Score=509.36  Aligned_cols=273  Identities=29%  Similarity=0.460  Sum_probs=258.7

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus        45 ~~d~~i~~~~~~i~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~  124 (330)
T 4e5n_A           45 DAQAMMAFMPDRVDADFLQACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADA  124 (330)
T ss_dssp             TCSEEEECTTCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHhhCCCCcEEEECCCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHH
Confidence            5899999888999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCccccc--CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEE
Q psy6348          80 SLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYI  156 (333)
Q Consensus        80 ~~~~g~w~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV  156 (333)
                      .+|+|+|...  .+.|.+|+|||+||||+|+||+.+|+++++|||+|++|||+. ..+.+...|+...++++++++||+|
T Consensus       125 ~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV  204 (330)
T 4e5n_A          125 FVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFI  204 (330)
T ss_dssp             HHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEE
T ss_pred             HHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEE
Confidence            9999999732  346889999999999999999999999999999999999987 6666677788888999999999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC-------CCCCccchhhc
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE-------PPKSEQTFELI  229 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E-------P~~~~~~~~L~  229 (333)
                      ++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++|       |++.  .+|||
T Consensus       205 ~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~--~~~L~  282 (330)
T 4e5n_A          205 LLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQI--DPALL  282 (330)
T ss_dssp             EECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSC--CHHHH
T ss_pred             EEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCC--CchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999       8543  37999


Q ss_pred             CCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccc
Q psy6348         230 KHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP  279 (333)
Q Consensus       230 ~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~  279 (333)
                      ++|||++|||+|++|.|++.+++..+++|+.+|..|+    ++.|.||.|
T Consensus       283 ~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~vn~~  328 (330)
T 4e5n_A          283 AHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGE----RPINAVNRL  328 (330)
T ss_dssp             TCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTS----CCTTBSSCC
T ss_pred             cCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCC----CCCCccCCC
Confidence            9999999999999999999999999999999998888    799999976

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1.5e-67  Score=508.52  Aligned_cols=266  Identities=29%  Similarity=0.454  Sum_probs=223.6

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus        71 ~~d~li~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~  150 (340)
T 4dgs_A           71 SIRAVATGGGAGLSNEWMEKLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDR  150 (340)
T ss_dssp             GCCEEEEETTTCBCHHHHHHCSSCCEEEEESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CcEEEEEcCCCCCCHHHHhhCCCCEEEEECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHH
Confidence            5899999998999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCccccc-C-CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEE
Q psy6348          80 SLKEGKWDRK-L-YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYI  156 (333)
Q Consensus        80 ~~~~g~w~~~-~-~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV  156 (333)
                      .+|+|.|.+. . ..|.+|+|||+||||+|+||+.+|+++++|||+|++||++...    ..+... .++++++++||+|
T Consensus       151 ~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~----~~~~~~~~sl~ell~~aDvV  226 (340)
T 4dgs_A          151 LVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLS----GVDWIAHQSPVDLARDSDVL  226 (340)
T ss_dssp             HHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCT----TSCCEECSSHHHHHHTCSEE
T ss_pred             HHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCccc----ccCceecCCHHHHHhcCCEE
Confidence            9999999874 2 3578999999999999999999999999999999999997643    223433 4899999999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEE
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV  236 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~  236 (333)
                      ++|+|++++|+++++++.|+.||+|++|||++||+++|+++|+++|++|+++||+||||++||++.   +|||++|||++
T Consensus       227 il~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~---~~L~~~~nvil  303 (340)
T 4dgs_A          227 AVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIR---SEFHTTPNTVL  303 (340)
T ss_dssp             EECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCC---SHHHHSSSEEE
T ss_pred             EEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCc---cchhhCCCEEE
Confidence            999999999999999999999999999999999999999999999999999999999999999764   49999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         237 TPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                      |||+|++|.|++.+++..+++|+.++..|+    ++.|.||
T Consensus       304 TPHia~~t~e~~~~~~~~~~~nl~~~~~g~----~~~~~Vn  340 (340)
T 4dgs_A          304 MPHQGSATVETRMAMGKLVLANLAAHFAGE----KAPNTVN  340 (340)
T ss_dssp             CSSCSSCCHHHHHHHHHHHHHHHHHHHTTS----CCTTBC-
T ss_pred             cCcCCcCCHHHHHHHHHHHHHHHHHHHcCC----CCCCCcC
Confidence            999999999999999999999999998888    7888887

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=9e-67  Score=505.55  Aligned_cols=278  Identities=32%  Similarity=0.466  Sum_probs=260.1

Q ss_pred             CceEEEE-eCCCCCCHHHhcccC-cceEEEcccCc----CccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCC
Q psy6348           1 KYDGLVV-RSDTKVTAEVLQASN-LQVVGRAGTGV----DNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNV   74 (333)
Q Consensus         1 ~~daliv-~s~~~v~~~~l~~~~-Lk~I~~~g~G~----d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i   74 (333)
                      ++|++++ ++.+++++++|+++| ||+|++.|+|+    ||||+++|+++||.|+|+||+ +.+||||++++||+++|++
T Consensus        48 ~ad~li~~~~~~~~~~~~l~~~~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~  126 (352)
T 3gg9_A           48 DVEALVLIRERTRVTRQLLDRLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRI  126 (352)
T ss_dssp             TCSEEEECTTSSCBCHHHHTTCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTH
T ss_pred             CCeEEEEeCCCCCCCHHHHhhCCCCeEEEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhH
Confidence            5899998 788899999999999 99999999999    999999999999999999999 9999999999999999999


Q ss_pred             CccchhhhcCcccccC----------CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc
Q psy6348          75 PQGCQSLKEGKWDRKL----------YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL  144 (333)
Q Consensus        75 ~~~~~~~~~g~w~~~~----------~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~  144 (333)
                      +.+++.+++|.|.+..          ..|.+|.|||+||||+|+||+.+|+++++|||+|++||++...+.+.+.|++.+
T Consensus       127 ~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~  206 (352)
T 3gg9_A          127 PQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVA  206 (352)
T ss_dssp             HHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEEC
T ss_pred             HHHHHHHHcCCCCcccccccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEe
Confidence            9999999999998642          357899999999999999999999999999999999999865555667888877


Q ss_pred             -ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCc
Q psy6348         145 -GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSE  223 (333)
Q Consensus       145 -~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~  223 (333)
                       ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||++. 
T Consensus       207 ~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~-  285 (352)
T 3gg9_A          207 ESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQ-  285 (352)
T ss_dssp             SSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCS-
T ss_pred             CCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCC-
Confidence             899999999999999999999999999999999999999999999999999999999999999999999999999653 


Q ss_pred             cchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcccC
Q psy6348         224 QTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRN  286 (333)
Q Consensus       224 ~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~~~  286 (333)
                       .+|||++|||++|||+|++|.|++.++...+++||.+|..|+     +.|.||++.+.....
T Consensus       286 -~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~-----p~~~Vn~~~~~~~~~  342 (352)
T 3gg9_A          286 -GHTLLRMENCICTPHIGYVERESYEMYFGIAFQNILDILQGN-----VDSVANPTALAPALI  342 (352)
T ss_dssp             -CCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTC-----CTTBSCGGGSSCTTT
T ss_pred             -CChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHcCC-----CCcccCHHHHHHHHH
Confidence             379999999999999999999999999999999999999886     569999988776543

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=5.4e-67  Score=505.22  Aligned_cols=273  Identities=26%  Similarity=0.375  Sum_probs=248.4

Q ss_pred             CceEEEEeCCCCCCHH-HhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCc
Q psy6348           1 KYDGLVVRSDTKVTAE-VLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ   76 (333)
Q Consensus         1 ~~daliv~s~~~v~~~-~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~   76 (333)
                      ++|++++++.++++++ +|+++|   ||+|++.|+|+||||+++|+++||.|+|+|++|+.+||||+++++|+++|+++.
T Consensus        45 ~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~  124 (343)
T 2yq5_A           45 GCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGE  124 (343)
T ss_dssp             TCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCcEEEEcCCCCcCHHHHHHhccccCceEEEECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHH
Confidence            6899999988999999 999874   999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhh-cCcccc-cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCC
Q psy6348          77 GCQSLK-EGKWDR-KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLAD  154 (333)
Q Consensus        77 ~~~~~~-~g~w~~-~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aD  154 (333)
                      +++.+| +|.|.. ..+.+.+|+||||||||+|+||+.+|+++++|||+|++|||+....  .+.++.+.++++++++||
T Consensus       125 ~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~~~~~~~~~l~ell~~aD  202 (343)
T 2yq5_A          125 FRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE--FEPFLTYTDFDTVLKEAD  202 (343)
T ss_dssp             HHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG--GTTTCEECCHHHHHHHCS
T ss_pred             HHHHHHHcCCcccccCCCccccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh--hhccccccCHHHHHhcCC
Confidence            999999 898754 3467899999999999999999999999999999999999987542  233466679999999999


Q ss_pred             EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCcc----------
Q psy6348         155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQ----------  224 (333)
Q Consensus       155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~----------  224 (333)
                      +|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||+..+.          
T Consensus       203 vV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~  282 (343)
T 2yq5_A          203 IVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPE  282 (343)
T ss_dssp             EEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCH
T ss_pred             EEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCcccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999942111          


Q ss_pred             -chhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccc
Q psy6348         225 -TFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP  279 (333)
Q Consensus       225 -~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~  279 (333)
                       .+|||++|||++|||+|++|.|++.++++.+++|+.+|..|+    ++.|.||..
T Consensus       283 ~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni~~~l~g~----~~~~~v~~~  334 (343)
T 2yq5_A          283 DYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQLTIAKGG----RPRSIVNLT  334 (343)
T ss_dssp             HHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTC----CCTTBC---
T ss_pred             chhHHhcCCCEEECCccccchHHHHHHHHHHHHHHHHHHHcCC----CCCceECCc
Confidence             158999999999999999999999999999999999998888    789999964

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=3.6e-66  Score=501.06  Aligned_cols=274  Identities=30%  Similarity=0.465  Sum_probs=253.8

Q ss_pred             CceEEEEeCC--CCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRSD--TKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s~--~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++|+++.  +++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++
T Consensus        62 ~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~  141 (351)
T 3jtm_A           62 DLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPG  141 (351)
T ss_dssp             TCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHH
Confidence            6899998763  579999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCcccccC--CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-ChhhhccCC
Q psy6348          78 CQSLKEGKWDRKL--YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIWPLA  153 (333)
Q Consensus        78 ~~~~~~g~w~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell~~a  153 (333)
                      ++.+++|.|.+..  ..+.+|+||||||||+|+||+.+|+++++|||+|++||++. +.+.+.+.|+..+ ++++++++|
T Consensus       142 ~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~a  221 (351)
T 3jtm_A          142 YNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKC  221 (351)
T ss_dssp             HHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGC
T ss_pred             HHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcC
Confidence            9999999998542  34789999999999999999999999999999999999986 5666777888776 899999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK  233 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn  233 (333)
                      |+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|++||++|+++||+||||++||++.+  +|||++||
T Consensus       222 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~--~pL~~~~n  299 (351)
T 3jtm_A          222 DVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKD--HPWRYMPN  299 (351)
T ss_dssp             SEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTT--CGGGTSTT
T ss_pred             CEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCC--ChhhcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999996643  79999999


Q ss_pred             EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         234 VIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       234 vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                      |++|||+|++|.|++.+++..+++|+.+|..|++.  .+.|.|+.
T Consensus       300 vilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~--~~~~~i~~  342 (351)
T 3jtm_A          300 QAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDF--PTENYIVK  342 (351)
T ss_dssp             BCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCC--CGGGEEEE
T ss_pred             EEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCC--CCceEEec
Confidence            99999999999999999999999999999888732  35666654

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=9.9e-66  Score=499.77  Aligned_cols=269  Identities=19%  Similarity=0.305  Sum_probs=247.5

Q ss_pred             ceEEEEeCCCCCCHHHhcccC-cceEEE-cccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           2 YDGLVVRSDTKVTAEVLQASN-LQVVGR-AGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         2 ~daliv~s~~~v~~~~l~~~~-Lk~I~~-~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      +|+++  +.+++++++|+++| ||+|++ .|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++
T Consensus        77 ~~~i~--~~~~i~~~~l~~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~  154 (365)
T 4hy3_A           77 ARYII--GQPPLSAETLARMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADI  154 (365)
T ss_dssp             EEEEE--ECCCCCHHHHTTCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred             eEEEE--eCCCCCHHHHhhCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHH
Confidence            45554  34799999999999 999997 489999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCc--cccc-CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEE
Q psy6348          80 SLKEGK--WDRK-LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYI  156 (333)
Q Consensus        80 ~~~~g~--w~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV  156 (333)
                      .+|+|+  |.+. .+.+.+++|||+||||+|+||+.+|+++++|||+|++|||+.+.+.+.+.|+...++++++++||+|
T Consensus       155 ~~r~g~~~w~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV  234 (365)
T 4hy3_A          155 AFQEGTELWGGEGNASARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFI  234 (365)
T ss_dssp             HHHHTCCCCSSSSTTSCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEE
T ss_pred             HHHcCCccccccccccccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEE
Confidence            999998  5432 3468999999999999999999999999999999999999887776777888888999999999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEE
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV  236 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~  236 (333)
                      ++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|++||++|+|+ |+||||++||++.+  +|||++|||++
T Consensus       235 ~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~--~pL~~~~nvil  311 (365)
T 4hy3_A          235 FVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLD--HPVRSLKGFIR  311 (365)
T ss_dssp             EECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTT--CGGGTCTTEEE
T ss_pred             EEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCC--ChhhcCCCEEE
Confidence            9999999999999999999999999999999999999999999999999998 99999999996543  69999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccc
Q psy6348         237 TPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP  279 (333)
Q Consensus       237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~  279 (333)
                      |||+|++|.|++.+++..+++||.++..|+    ++.++||.+
T Consensus       312 TPHia~~t~e~~~~~~~~~~~ni~~~~~G~----~~~~~vn~~  350 (365)
T 4hy3_A          312 SAHRAGALDSAFKKMGDMVLEDMDLMDRGL----PPMRCKRAE  350 (365)
T ss_dssp             CCSCSSCCHHHHHHHHHHHHHHHHHHHTTC----CCCSSEECC
T ss_pred             CCccccCHHHHHHHHHHHHHHHHHHHHcCC----Ccccccccc
Confidence            999999999999999999999999999998    788999963

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=3.5e-65  Score=518.54  Aligned_cols=301  Identities=46%  Similarity=0.704  Sum_probs=285.3

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++
T Consensus        44 ~~d~li~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~  123 (529)
T 1ygy_A           44 EADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADA  123 (529)
T ss_dssp             GCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEEcCCCCCCHHHHhhCCCCcEEEECCcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHH
Confidence            5899999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH  159 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~  159 (333)
                      .+|+|+|.+..+.|.+++|+|+||||+|+||+++|++|+++||+|++|||+.+.+.+.+.|+...++++++++||+|++|
T Consensus       124 ~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~  203 (529)
T 1ygy_A          124 SLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVH  203 (529)
T ss_dssp             HHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEEC
T ss_pred             HHHhCCCcccCcCccccCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEEC
Confidence            99999998877789999999999999999999999999999999999999887766777888877999999999999999


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH  239 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH  239 (333)
                      +|.+++|+++++++.++.||+|+++||++||+++|+++|+++|++|+++||++|||+.||..+   +|||++||+++|||
T Consensus       204 ~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~---~~L~~~~~vilTPh  280 (529)
T 1ygy_A          204 LPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTD---SPLFELAQVVVTPH  280 (529)
T ss_dssp             CCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSC---CGGGGCTTEEECSS
T ss_pred             CCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCC---chHHhCCCEEEccc
Confidence            999999999999999999999999999999999999999999999999999999999999753   69999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCcccCCCCCchHHHHHHHhHHHHHHhcCC
Q psy6348         240 LGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAASRNPENTSWISLARSLGKISSQLLQTS  310 (333)
Q Consensus       240 i~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~  310 (333)
                      ++++|.|++.+++..+++|+.++.+|+    .+.|+||.+.  ++..+++.||+.|++++|+++.|++.++
T Consensus       281 ~~~~t~ea~~~~~~~~~~~l~~~l~~~----~~~~~v~~~~--~~~hd~i~P~l~La~~lg~~~~qla~g~  345 (529)
T 1ygy_A          281 LGASTAEAQDRAGTDVAESVRLALAGE----FVPDAVNVGG--GVVNEEVAPWLDLVRKLGVLAGVLSDEL  345 (529)
T ss_dssp             CSSCBHHHHHHHHHHHHHHHHHHHTTC----CCTTBCSCCS--TTSCTTTTTHHHHHHHHHHHHHHTSSSC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHcCC----CCCcccCCcc--cccchhhhhHHHHHHHHHHHHHHHhCCC
Confidence            999999999999999999999998887    7889999864  5677889999999999999999997654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=5.4e-66  Score=495.01  Aligned_cols=273  Identities=25%  Similarity=0.364  Sum_probs=244.1

Q ss_pred             CceEEEEeCCCCCCHHHh-cccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc-
Q psy6348           1 KYDGLVVRSDTKVTAEVL-QASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG-   77 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l-~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~-   77 (333)
                      ++|++++++ .++ +++| +++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++ 
T Consensus        40 ~ad~l~~~~-~~~-~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~  117 (324)
T 3evt_A           40 QIEVMYGNH-PLL-KTILARPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAW  117 (324)
T ss_dssp             GEEEEESCC-THH-HHHHHSTTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CcEEEEECC-cCh-HHHHHhhCCCceEEEECCccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHH
Confidence            468877665 467 9999 7888 9999999999999999999999999999999999999999999999999999999 


Q ss_pred             chhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEE
Q psy6348          78 CQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYIT  157 (333)
Q Consensus        78 ~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~  157 (333)
                      ++.+++|.|.+.. .+.+++|||+||||+|+||+.+|+++++|||+|++||++..............++++++++||+|+
T Consensus       118 ~~~~~~~~W~~~~-~~~~l~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~  196 (324)
T 3evt_A          118 LNQRGARQWALPM-TTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIV  196 (324)
T ss_dssp             HHHTTTCCSSCSS-CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEE
T ss_pred             HHHHhcCCcccCC-CCccccCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEE
Confidence            9999999998654 689999999999999999999999999999999999997643211111233458999999999999


Q ss_pred             EecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEc
Q psy6348         158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT  237 (333)
Q Consensus       158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~T  237 (333)
                      +|+|+|++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||++..  +|||++|||++|
T Consensus       197 l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~--~pL~~~~nvilT  274 (324)
T 3evt_A          197 NALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTD--HPLWQRDDVLIT  274 (324)
T ss_dssp             ECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTT--CGGGGCSSEEEC
T ss_pred             EcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCC--ChhhcCCCEEEc
Confidence            999999999999999999999999999999999999999999999999999999999999996543  799999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHhH-cCCCCCCCCCCcccccccC
Q psy6348         238 PHLGASTKEAQIRVAVEIAEQFIALA-NTNPQYTSIQGVLNAPALA  282 (333)
Q Consensus       238 PHi~~~t~ea~~~~~~~~~~~i~~~~-~~~~~~~~~~~~vn~~~~~  282 (333)
                      ||+|++|.|++.+++..+++|+.+|. +|.    ++.|.||++...
T Consensus       275 PHia~~t~~~~~~~~~~~~~nl~~~l~~~~----~~~n~V~~~~~~  316 (324)
T 3evt_A          275 PHISGQIAHFRATVFPIFAANFAQFVKDGT----LVRNQVDLNRGY  316 (324)
T ss_dssp             CSCTTCCCCHHHHHHHHHHHHHHHHHHHSC----CCSCBCC-----
T ss_pred             CccccChHHHHHHHHHHHHHHHHHHHhCCC----CCCceECccccc
Confidence            99999999999999999999999975 555    578999987543

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.8e-65  Score=491.25  Aligned_cols=263  Identities=62%  Similarity=1.030  Sum_probs=248.7

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+|++|+.+||||++++||++.|+++.+++
T Consensus        67 ~~d~li~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~  146 (335)
T 2g76_A           67 DCEGLIVRSATKVTADVINAAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATA  146 (335)
T ss_dssp             GCSEEEECSSSCBCHHHHHHCSSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CceEEEEcCCCCCCHHHHhhCCCCcEEEECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHH
Confidence            5799999988899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH  159 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~  159 (333)
                      .+|+|.|.+..+.+.++.|+||||||+|+||+.+|+++++|||+|++|||+.+.+.+.+.|++..++++++++||+|++|
T Consensus       147 ~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~  226 (335)
T 2g76_A          147 SMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVH  226 (335)
T ss_dssp             HHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEEC
T ss_pred             HHHcCCCCccCCCCcCCCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEe
Confidence            99999998765678999999999999999999999999999999999999887666677788777999999999999999


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH  239 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH  239 (333)
                      +|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||+.+   +|||++||+++|||
T Consensus       227 ~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~---~~L~~~~nvilTPH  303 (335)
T 2g76_A          227 TPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRD---RALVDHENVISCPH  303 (335)
T ss_dssp             CCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSC---CHHHHSTTEEECSS
T ss_pred             cCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCC---chHHhCCCEEECCc
Confidence            999999999999999999999999999999999999999999999999999999999999543   69999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         240 LGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       240 i~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      ++++|.|++.++++.+++|+.+|..|+
T Consensus       304 ~~~~t~e~~~~~~~~~~~nl~~~~~g~  330 (335)
T 2g76_A          304 LGASTKEAQSRCGEEIAVQFVDMVKGK  330 (335)
T ss_dssp             CTTCBHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999988886

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=9.3e-66  Score=495.32  Aligned_cols=274  Identities=27%  Similarity=0.431  Sum_probs=250.3

Q ss_pred             CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++++++.+++++++|+++|   ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+++.+
T Consensus        44 ~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~  123 (333)
T 1dxy_A           44 GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKV  123 (333)
T ss_dssp             TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeEEEEcCCCCCCHHHHHhCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHH
Confidence            5899999988899999999875   9999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCcccc-cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEE
Q psy6348          78 CQSLKEGKWDR-KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYI  156 (333)
Q Consensus        78 ~~~~~~g~w~~-~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV  156 (333)
                      ++.+|+|.|.+ ....+.++.|+|+||||+|+||+.+|+++++|||+|++||++.... +.+ .+.+.++++++++||+|
T Consensus       124 ~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~l~ell~~aDvV  201 (333)
T 1dxy_A          124 QAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG-DHP-DFDYVSLEDLFKQSDVI  201 (333)
T ss_dssp             HHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS-CCT-TCEECCHHHHHHHCSEE
T ss_pred             HHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchh-hHh-ccccCCHHHHHhcCCEE
Confidence            99999999964 4456889999999999999999999999999999999999987433 222 24556899999999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCC-----------CCccc
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP-----------KSEQT  225 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~-----------~~~~~  225 (333)
                      ++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||+           +++..
T Consensus       202 ~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~  281 (333)
T 1dxy_A          202 DLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLW  281 (333)
T ss_dssp             EECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHH
T ss_pred             EEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccch
Confidence            9999999999999999999999999999999999999999999999999999999999999983           11112


Q ss_pred             hhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccc
Q psy6348         226 FELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPA  280 (333)
Q Consensus       226 ~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~  280 (333)
                      +|||++|||++|||+|++|.|++.+++..+++|+.+|..|+    ++.|.||.|.
T Consensus       282 ~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~~~g~----~~~~~v~~~~  332 (333)
T 1dxy_A          282 DELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKG----ETSTEVTGPA  332 (333)
T ss_dssp             HHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHHS----CCTTEECC--
T ss_pred             hHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHHHcCC----CCCceeCCCC
Confidence            58999999999999999999999999999999999988887    7889999873

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=1.9e-64  Score=486.25  Aligned_cols=272  Identities=28%  Similarity=0.385  Sum_probs=250.7

Q ss_pred             CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++++++.+++++++|+++|   ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++
T Consensus        46 ~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~  125 (333)
T 1j4a_A           46 GADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAM  125 (333)
T ss_dssp             TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCcEEEEcCCCCCCHHHHHhccccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHH
Confidence            5799999887899999999874   9999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEE
Q psy6348          78 CQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYI  156 (333)
Q Consensus        78 ~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV  156 (333)
                      ++.+|+|.|.+....+.++.|+|+||||+|+||+.+|+++++|||+|++||++.... +.+ .+.+. ++++++++||+|
T Consensus       126 ~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~~l~ell~~aDvV  203 (333)
T 1j4a_A          126 DEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPE-LEK-KGYYVDSLDDLYKQADVI  203 (333)
T ss_dssp             HHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHH-TTCBCSCHHHHHHHCSEE
T ss_pred             HHHHHcCCCccCCcccccCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchh-HHh-hCeecCCHHHHHhhCCEE
Confidence            999999999765567899999999999999999999999999999999999987654 333 35566 899999999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCC--CCc-----cch---
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP--KSE-----QTF---  226 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~--~~~-----~~~---  226 (333)
                      ++|+|++++|+++++++.|+.||+|++|||++||+++|+++|+++|++|+++||+||||++||+  +.+     ..+   
T Consensus       204 ~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~  283 (333)
T 1j4a_A          204 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARL  283 (333)
T ss_dssp             EECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHH
T ss_pred             EEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccch
Confidence            9999999999999999999999999999999999999999999999999999999999999994  111     112   


Q ss_pred             -hhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         227 -ELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       227 -~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                       |||++|||++|||+|++|.|++.++++.+++|+.+|..|+    ++.|.||.
T Consensus       284 ~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~----~~~~~v~~  332 (333)
T 1j4a_A          284 ADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGK----EAETPVKV  332 (333)
T ss_dssp             HHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTTC----CCSSBCCC
T ss_pred             hhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCC----CCCccccC
Confidence             6999999999999999999999999999999999998887    78888884

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=2.7e-65  Score=489.86  Aligned_cols=269  Identities=26%  Similarity=0.345  Sum_probs=242.0

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|+++++.  ++++++|+++| ||+|++.|+|+||||++++. +||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus        47 ~ad~li~~~--~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~  123 (324)
T 3hg7_A           47 EAHILMAEP--ARAKPLLAKANKLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYRE  123 (324)
T ss_dssp             GCSEEEECH--HHHGGGGGGCTTCCEEEESSSCCGGGSCTTSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEECC--CCCHHHHhhCCCceEEEECCCCCCccChHHHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHH
Confidence            478988854  56789999999 99999999999999998875 599999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH  159 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~  159 (333)
                      .+++|.|.+.  .+.+++|||+||||+|+||+.+|+++++|||+|++||++.........+....++++++++||+|++|
T Consensus       124 ~~~~g~W~~~--~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~  201 (324)
T 3hg7_A          124 QQKQRLWQSH--PYQGLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSV  201 (324)
T ss_dssp             HHHTTCCCCC--CCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEEC
T ss_pred             HHhhCCCcCC--CCcccccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEe
Confidence            9999999863  57899999999999999999999999999999999999763221111223345899999999999999


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH  239 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH  239 (333)
                      +|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||++.+  +|||++|||++|||
T Consensus       202 lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~--~pL~~~~nvilTPH  279 (324)
T 3hg7_A          202 LPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPAD--SPLWGQPNLIITPH  279 (324)
T ss_dssp             CCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTT--CTTTTCTTEEECCS
T ss_pred             CCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCC--ChhhcCCCEEEeCC
Confidence            9999999999999999999999999999999999999999999999999999999999996543  79999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccC
Q psy6348         240 LGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALA  282 (333)
Q Consensus       240 i~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~  282 (333)
                      +|++|.+  .++++.+++|+.+|..|+    ++.|.||++...
T Consensus       280 ia~~t~~--~~~~~~~~~nl~~~~~G~----~~~~~V~~~~~~  316 (324)
T 3hg7_A          280 NSAYSFP--DDVAQIFVRNYIRFIDGQ----PLDGKIDFDKGY  316 (324)
T ss_dssp             CSSCCCH--HHHHHHHHHHHHHHHTTC----CCTTBCCCC---
T ss_pred             CccccHH--HHHHHHHHHHHHHHHcCC----CCcceEChhhhc
Confidence            9999976  479999999999999998    899999987654

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=2.1e-64  Score=485.55  Aligned_cols=271  Identities=26%  Similarity=0.381  Sum_probs=248.4

Q ss_pred             CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++++++.+++++++|+++|   ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+
T Consensus        45 ~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~  124 (331)
T 1xdw_A           45 GFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYT  124 (331)
T ss_dssp             TCSEEEECTTCCBCHHHHHHHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHhhCcccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHH
Confidence            5899999988899999999875   9999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCcccc-cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEE
Q psy6348          78 CQSLKEGKWDR-KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYI  156 (333)
Q Consensus        78 ~~~~~~g~w~~-~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV  156 (333)
                      ++.+++|.|.. ....+.++.|+|+||||+|+||+.+|+++++|||+|++||++.... +. ..+.+.++++++++||+|
T Consensus       125 ~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~l~ell~~aDvV  202 (331)
T 1xdw_A          125 TSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKG-IE-DYCTQVSLDEVLEKSDII  202 (331)
T ss_dssp             HHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCS-CT-TTCEECCHHHHHHHCSEE
T ss_pred             HHHHHcCCCccccCcCccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHH-HH-hccccCCHHHHHhhCCEE
Confidence            99999999964 4456889999999999999999999999999999999999987433 22 234556899999999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC---C----cc----c
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK---S----EQ----T  225 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~---~----~~----~  225 (333)
                      ++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||+.   +    +.    .
T Consensus       203 ~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~  282 (331)
T 1xdw_A          203 TIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLF  282 (331)
T ss_dssp             EECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHH
T ss_pred             EEecCCchHHHHHhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccch
Confidence            99999999999999999999999999999999999999999999999999999999999999942   1    01    1


Q ss_pred             hhhcCC-CcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         226 FELIKH-PKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       226 ~~L~~~-pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                      +|||++ |||++|||+|++|.|++.+++..+++|+.+|..|+    ++.|.||
T Consensus       283 ~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~~~g~----~~~~~v~  331 (331)
T 1xdw_A          283 EKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETG----DCPNKIK  331 (331)
T ss_dssp             HHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHS----CCTTBCC
T ss_pred             HHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHcCC----CCCCCCC
Confidence            379999 99999999999999999999999999999988877    6788876

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.2e-63  Score=475.69  Aligned_cols=263  Identities=41%  Similarity=0.648  Sum_probs=249.3

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus        44 ~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~  123 (307)
T 1wwk_A           44 DVEAIIVRSKPKVTRRVIESAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADR  123 (307)
T ss_dssp             TCSEEEESSCSCBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEEcCCCCCCHHHHhhCCCCeEEEECCccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5899999887789999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH  159 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~  159 (333)
                      .+|+|.|.+..+.+.++.|+|+||||+|+||+.+|+++++|||+|++||++...+.+.+.|+...++++++++||+|++|
T Consensus       124 ~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~  203 (307)
T 1wwk_A          124 KMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIH  203 (307)
T ss_dssp             HHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEEC
T ss_pred             HHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEe
Confidence            99999998655678999999999999999999999999999999999999887666677788777999999999999999


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH  239 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH  239 (333)
                      +|++++|+++++++.|+.||+|++|||++||+++|+++|.++|++|+++||++|||++||.+.+  +|||++||+++|||
T Consensus       204 ~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~--~~L~~~~nviltPh  281 (307)
T 1wwk_A          204 VPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKD--HPLTKFDNVVLTPH  281 (307)
T ss_dssp             CCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTT--CGGGGCTTEEECSS
T ss_pred             cCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCC--ChHHhCCCEEECCc
Confidence            9999999999999999999999999999999999999999999999999999999999996432  69999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhHcC
Q psy6348         240 LGASTKEAQIRVAVEIAEQFIALANT  265 (333)
Q Consensus       240 i~~~t~ea~~~~~~~~~~~i~~~~~~  265 (333)
                      ++++|.|++.++.+.+++|+.+|..|
T Consensus       282 ~~~~t~~~~~~~~~~~~~nl~~~~~g  307 (307)
T 1wwk_A          282 IGASTVEAQERAGVEVAEKVVKILKG  307 (307)
T ss_dssp             CTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999998765

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=2.7e-63  Score=486.91  Aligned_cols=272  Identities=28%  Similarity=0.384  Sum_probs=251.7

Q ss_pred             CceEEEEeC--CCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRS--DTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s--~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|++|+++  .+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+|++|+.+||||++++||++.|+++++
T Consensus        89 ~ad~li~~~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~  168 (393)
T 2nac_A           89 DADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPS  168 (393)
T ss_dssp             TCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             CCCEEEEcCccCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHH
Confidence            579998875  4589999999999 9999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCcccccC--CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-cChhhhccCC
Q psy6348          78 CQSLKEGKWDRKL--YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-LGLEDIWPLA  153 (333)
Q Consensus        78 ~~~~~~g~w~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-~~l~ell~~a  153 (333)
                      ++.+|+|.|....  ..+.+|+|||+||||+|+||+.+|+++++|||+|++||++. ..+.+.+.|+.. .++++++++|
T Consensus       169 ~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~a  248 (393)
T 2nac_A          169 HEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVC  248 (393)
T ss_dssp             HHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGC
T ss_pred             HHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcC
Confidence            9999999997421  34689999999999999999999999999999999999986 445566678876 4899999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK  233 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn  233 (333)
                      |+|++|+|++++|+++|+++.|+.||+|++|||++||+++|+++|+++|++|+|+||+||||++||.+..  +|||++||
T Consensus       249 DvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~--~pL~~~~n  326 (393)
T 2nac_A          249 DVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKD--HPWRTMPY  326 (393)
T ss_dssp             SEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTT--CGGGTSTT
T ss_pred             CEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCC--ChhHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999996532  79999999


Q ss_pred             EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         234 VIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       234 vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                      |++|||+|++|.|++.+++..+++|+.+|..|+    ++.|.++.
T Consensus       327 vilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~----~~~~~~~~  367 (393)
T 2nac_A          327 NGMTPHISGTTLTAQARYAAGTREILECFFEGR----PIRDEYLI  367 (393)
T ss_dssp             BCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTC----CCCGGGEE
T ss_pred             EEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCC----CCcceeEe
Confidence            999999999999999999999999999988887    67777664

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=2.4e-63  Score=483.76  Aligned_cols=275  Identities=28%  Similarity=0.404  Sum_probs=250.9

Q ss_pred             CceEEEEeCC--CCCCHHHhcccC-cceEEEcccCcCccChhhHhhC--CcEEEECCCCCchHHHHHHHHHHHHHhcCCC
Q psy6348           1 KYDGLVVRSD--TKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRK--GVLVLNAPGGNFISACELTCSLISALSRNVP   75 (333)
Q Consensus         1 ~~daliv~s~--~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~--gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~   75 (333)
                      ++|+++++..  +++++++|+++| ||+|++.|+|+||||+++|+++  ||.|+|+||+|+.+||||++++||+++|+++
T Consensus        60 ~~d~~i~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~  139 (364)
T 2j6i_A           60 DADIIITTPFHPAYITKERIDKAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFV  139 (364)
T ss_dssp             GCSEEEECTTSCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHH
T ss_pred             CCeEEEecCcCCCCCCHHHHhhCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChH
Confidence            5789988653  469999999999 9999999999999999999999  9999999999999999999999999999999


Q ss_pred             ccchhhhcCcccccC--CCccccCCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCcccc-Chhhhc
Q psy6348          76 QGCQSLKEGKWDRKL--YTGTELYGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNIASL-GLEDIW  150 (333)
Q Consensus        76 ~~~~~~~~g~w~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv~~~-~l~ell  150 (333)
                      .+++.+++|.|.+..  ..+.+|+|+||||||+|+||+.+|+++++|||+ |++||++. ..+.+.+.|+... ++++++
T Consensus       140 ~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell  219 (364)
T 2j6i_A          140 PAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELV  219 (364)
T ss_dssp             HHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHH
T ss_pred             HHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHH
Confidence            999999999997432  357899999999999999999999999999997 99999876 4555667787765 899999


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcC
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIK  230 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~  230 (333)
                      ++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||++.+  +|||.
T Consensus       220 ~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~--~pL~~  297 (364)
T 2j6i_A          220 AQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKD--HPWRD  297 (364)
T ss_dssp             HTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTT--CHHHH
T ss_pred             hcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCC--ChHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999996543  69999


Q ss_pred             C--C---cEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         231 H--P---KVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       231 ~--p---nvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                      +  |   ||++|||+|++|.|++.+++..+++|+.+|..|++.. .+.|+||.
T Consensus       298 ~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~-~~~n~v~~  349 (364)
T 2j6i_A          298 MRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESFFTGKFDY-RPQDIILL  349 (364)
T ss_dssp             CCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHHHTTCCCC-CGGGEEEB
T ss_pred             ccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCC-CCCceecC
Confidence            9  9   9999999999999999999999999999988886222 35666664

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=9.2e-63  Score=470.73  Aligned_cols=264  Identities=39%  Similarity=0.578  Sum_probs=248.9

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+++.+++
T Consensus        46 ~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~  125 (313)
T 2ekl_A           46 NYDIIVVRSRTKVTKDVIEKGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMA  125 (313)
T ss_dssp             GCSEEEECSSSCBCHHHHHHCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CCeEEEEcCCCCCCHHHHhhCCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHH
Confidence            5799999888899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH  159 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~  159 (333)
                      .+|+|.|.  .+.+.++.|+|+||||+|+||+.+|++++++||+|++||++.....+.+.|+...++++++++||+|++|
T Consensus       126 ~~~~g~w~--~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~  203 (313)
T 2ekl_A          126 LAKSGIFK--KIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLH  203 (313)
T ss_dssp             HHHTTCCC--CCCCCCCTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEEC
T ss_pred             HHHcCCCC--CCCCCCCCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEe
Confidence            99999996  3568899999999999999999999999999999999999887665667788777999999999999999


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccC
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH  239 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPH  239 (333)
                      +|++++|+++++++.++.||+|++|||++||+++|+++|.++|++|+++||++|||++||.+++...|||++|||++|||
T Consensus       204 ~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH  283 (313)
T 2ekl_A          204 VTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTH  283 (313)
T ss_dssp             CCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCS
T ss_pred             ccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCc
Confidence            99999999999999999999999999999999999999999999999999999999999976421129999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         240 LGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       240 i~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      ++++|.|++.+++..+++|+.+|..|+
T Consensus       284 ~~~~t~~~~~~~~~~~~~n~~~~~~g~  310 (313)
T 2ekl_A          284 IGAQTKEAQKRVAEMTTQNLLNAMKEL  310 (313)
T ss_dssp             CTTCSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cCcCcHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999988886

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=4e-63  Score=473.52  Aligned_cols=261  Identities=25%  Similarity=0.326  Sum_probs=236.9

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCcc-C-hhh---HhhCCcEEEECCCC-CchHHHHHHHHHHHHHhcC
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNI-D-LTA---ATRKGVLVLNAPGG-NFISACELTCSLISALSRN   73 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~i-D-~~a---a~~~gI~V~n~p~~-n~~avAE~~l~l~l~~~R~   73 (333)
                      ++|++++++   +++++|++ | ||+|++.|+|+||| | +++   +.++||.|+|+|++ ++.+||||+++++|+++|+
T Consensus        41 ~ad~~i~~~---~~~~~l~~-~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~  116 (315)
T 3pp8_A           41 PADYALVWQ---PPVEMLAG-RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRR  116 (315)
T ss_dssp             CCSEEEESS---CCHHHHTT-CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEECC---CCHHHhCC-CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhC
Confidence            589999975   47999999 9 99999999999999 7 886   78899999999986 4799999999999999999


Q ss_pred             CCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc----ccChhhh
Q psy6348          74 VPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA----SLGLEDI  149 (333)
Q Consensus        74 i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~----~~~l~el  149 (333)
                      ++.+++.+++|.|.+.  .+.+++|||+||||+|+||+.+|+++++|||+|++||++....    .++.    ..+++++
T Consensus       117 ~~~~~~~~~~g~W~~~--~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~----~~~~~~~~~~~l~el  190 (315)
T 3pp8_A          117 FDDYQALKNQALWKPL--PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSRKSW----PGVESYVGREELRAF  190 (315)
T ss_dssp             HHHHHHHHHTTCCCCC--CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSCCCC----TTCEEEESHHHHHHH
T ss_pred             ChHHHHHHHhcccCCC--CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCchhh----hhhhhhcccCCHHHH
Confidence            9999999999999764  5789999999999999999999999999999999999876421    1221    2479999


Q ss_pred             ccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhc
Q psy6348         150 WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELI  229 (333)
Q Consensus       150 l~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~  229 (333)
                      +++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||+++|+++|++||++|+++||+||||++||++..  +|||
T Consensus       191 l~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~--~pL~  268 (315)
T 3pp8_A          191 LNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQE--SPLW  268 (315)
T ss_dssp             HHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTT--CGGG
T ss_pred             HhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCC--Chhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996543  7999


Q ss_pred             CCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccc
Q psy6348         230 KHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAP  279 (333)
Q Consensus       230 ~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~  279 (333)
                      ++|||++|||+|++|.+  .++...+++|+.+|..|+    ++.|.||+.
T Consensus       269 ~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~----~~~~~V~~~  312 (315)
T 3pp8_A          269 RHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGE----PVTGQVDRA  312 (315)
T ss_dssp             GCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTC----CCCCBCCCC
T ss_pred             cCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCC----CCCceECcc
Confidence            99999999999999986  579999999999998888    788999964

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.5e-61  Score=463.67  Aligned_cols=262  Identities=27%  Similarity=0.466  Sum_probs=246.5

Q ss_pred             CceEEEEeCCCCCCHHHhcccC--cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN--LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC   78 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~--Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~   78 (333)
                      ++|++++++.+++++++|+++|  ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+++.++
T Consensus        44 ~~d~~i~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~  123 (320)
T 1gdh_A           44 SVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGE  123 (320)
T ss_dssp             TCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHHhCCccceEEEECCcccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHH
Confidence            5799999987899999999886  99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCcccc---cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcC-CCCHHHHHhcCcccc-ChhhhccCC
Q psy6348          79 QSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP-MVSVEDAAKLNIASL-GLEDIWPLA  153 (333)
Q Consensus        79 ~~~~~g~w~~---~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~-~~~~~~a~~~gv~~~-~l~ell~~a  153 (333)
                      +.+++|.|..   ..+.+.++.|+||||||+|+||+.+|+++++|||+|++||+ +.....+.+.|+... ++++++++|
T Consensus       124 ~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~a  203 (320)
T 1gdh_A          124 KMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVS  203 (320)
T ss_dssp             HHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHC
T ss_pred             HHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhC
Confidence            9999999963   23467899999999999999999999999999999999999 876665666788777 899999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCc
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPK  233 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pn  233 (333)
                      |+|++|+|++++|+++++++.++.||+|++|||++||+++|+++|.++|++|+++||++|||++||+.   .+|||++||
T Consensus       204 DvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~---~~~L~~~~n  280 (320)
T 1gdh_A          204 QFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNI---NEGYYDLPN  280 (320)
T ss_dssp             SEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSC---CTTGGGCTT
T ss_pred             CEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCC---CChhhhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999933   369999999


Q ss_pred             EEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         234 VIVTPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       234 vi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      +++|||++++|.|++.+++..+ +|+.+|..|+
T Consensus       281 viltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~  312 (320)
T 1gdh_A          281 TFLFPHIGSAATQAREDMAHQA-NDLIDALFGG  312 (320)
T ss_dssp             EEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTT
T ss_pred             EEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCC
Confidence            9999999999999999999999 9999988886

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=1.1e-61  Score=469.31  Aligned_cols=275  Identities=33%  Similarity=0.468  Sum_probs=249.0

Q ss_pred             ceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchh
Q psy6348           2 YDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS   80 (333)
Q Consensus         2 ~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~   80 (333)
                      +|++++...+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+++.+++.
T Consensus        64 ~~~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~  143 (347)
T 1mx3_A           64 AVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA  143 (347)
T ss_dssp             EEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHhhCCCCCEEEEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            577888877899999999999 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCcccccC------CC-ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccC
Q psy6348          81 LKEGKWDRKL------YT-GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPL  152 (333)
Q Consensus        81 ~~~g~w~~~~------~~-g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~  152 (333)
                      +++|.|....      .. +.++.|+|+||||+|+||+.+|+++++|||+|++||++.....+...|+..+ ++++++++
T Consensus       144 ~~~g~w~~~~~~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~  223 (347)
T 1mx3_A          144 LREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFH  223 (347)
T ss_dssp             HHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHH
T ss_pred             HHcCCcccccccccccccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhc
Confidence            9999995321      12 3689999999999999999999999999999999999875545566787665 89999999


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP  232 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~p  232 (333)
                      ||+|++|+|++++|+++++++.|+.||+|++|||++||+++|+++|+++|++|+++||++|||+.||.... .+||+.+|
T Consensus       224 aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~-~~~L~~~~  302 (347)
T 1mx3_A          224 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS-QGPLKDAP  302 (347)
T ss_dssp             CSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTT-SSTTTTCS
T ss_pred             CCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCC-CchHHhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999996421 26899999


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         233 KVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       233 nvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                      |+++|||++++|.+++.++.+.+++|+.++..|++.. .+.|+||+
T Consensus       303 nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~g~~~~-~l~~~v~~  347 (347)
T 1mx3_A          303 NLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPD-SLKNCVNK  347 (347)
T ss_dssp             SEEECSSCTTCCHHHHHHHHHHHHHHHHHHHHSCTTT-TCSSBCC-
T ss_pred             CEEEEchHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc-ccCCCCCC
Confidence            9999999999999999999999999999988886221 24577764

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=1.1e-61  Score=466.86  Aligned_cols=266  Identities=29%  Similarity=0.401  Sum_probs=248.4

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++
T Consensus        65 ~~d~~i~~~~~~~~~~~l~~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~  144 (333)
T 3ba1_A           65 SIRAVVGNSNAGADAELIDALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDK  144 (333)
T ss_dssp             TEEEEEECSSSCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEEcCCCCCCHHHHhhCCCCcEEEEcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5799999988899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCcccccC-CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEE
Q psy6348          80 SLKEGKWDRKL-YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYIT  157 (333)
Q Consensus        80 ~~~~g~w~~~~-~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~  157 (333)
                      .+|+|.|.+.. ..+.+++|+++||||+|+||+.+|++++++||+|++||++....    .|+.. .++++++++||+|+
T Consensus       145 ~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~----~g~~~~~~l~ell~~aDvVi  220 (333)
T 3ba1_A          145 YVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN----TNYTYYGSVVELASNSDILV  220 (333)
T ss_dssp             HHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT----CCSEEESCHHHHHHTCSEEE
T ss_pred             HHHcCCCCccccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc----cCceecCCHHHHHhcCCEEE
Confidence            99999997533 35789999999999999999999999999999999999976432    25543 48999999999999


Q ss_pred             EecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEc
Q psy6348         158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVT  237 (333)
Q Consensus       158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~T  237 (333)
                      +|+|.+++|+++++++.++.||+|++|||++||.++|+++|.++|++|+++||++|||++||.+.   +||+++|||++|
T Consensus       221 l~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~---~~L~~~~nvilt  297 (333)
T 3ba1_A          221 VACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP---EKLFGLENVVLL  297 (333)
T ss_dssp             ECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCC---GGGGGCTTEEEC
T ss_pred             EecCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCc---chhhcCCCEEEC
Confidence            99999999999999999999999999999999999999999999999999999999999999654   689999999999


Q ss_pred             cCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         238 PHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       238 PHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                      ||+|++|.|++.++++.+++|+.+|..|+    ++.|.||
T Consensus       298 PH~~~~t~e~~~~~~~~~~~nl~~~~~g~----~~~~~Vn  333 (333)
T 3ba1_A          298 PHVGSGTVETRKVMADLVVGNLEAHFSGK----PLLTPVV  333 (333)
T ss_dssp             SSCTTCSHHHHHHHHHHHHHHHHHHHHTC----CCSSBCC
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHHHHHcCC----CCCCCCC
Confidence            99999999999999999999999988887    7788876

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.3e-61  Score=462.37  Aligned_cols=264  Identities=34%  Similarity=0.554  Sum_probs=244.8

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus        43 ~~d~~i~~~~~~~~~~~l~~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~  122 (311)
T 2cuk_A           43 GAVGLIPTVEDRIDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAA  122 (311)
T ss_dssp             TCSEEECCTTSCBCHHHHHHSTTCCEEECSSSCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCeEEEEcCCCCCCHHHHhhCCCCeEEEECCcCccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHH
Confidence            5799999887899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCccccc---CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEE
Q psy6348          80 SLKEGKWDRK---LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYI  156 (333)
Q Consensus        80 ~~~~g~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV  156 (333)
                      .+|+|.|.+.   .+.+.++.|+|+||||+|+||+.+|++++++||+|++||++.....     +...++++++++||+|
T Consensus       123 ~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-----~~~~~l~ell~~aDvV  197 (311)
T 2cuk_A          123 YARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP-----YPFLSLEELLKEADVV  197 (311)
T ss_dssp             HHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS-----SCBCCHHHHHHHCSEE
T ss_pred             HHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc-----cccCCHHHHHhhCCEE
Confidence            9999999632   2357899999999999999999999999999999999999874332     3455899999999999


Q ss_pred             EEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEE
Q psy6348         157 TVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV  236 (333)
Q Consensus       157 ~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~  236 (333)
                      ++|+|++++|+++++++.++.||+|+++||++||+++|+++|.++|+ |+++||++|||++||.+..  +|||++||+++
T Consensus       198 ~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~--~~L~~~~nvil  274 (311)
T 2cuk_A          198 SLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPG--HPLYALPNAVI  274 (311)
T ss_dssp             EECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTT--SGGGGCTTEEE
T ss_pred             EEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCC--ChhhhCCCEEE
Confidence            99999999999999999999999999999999999999999999999 9999999999999995432  69999999999


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcc
Q psy6348         237 TPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVL  276 (333)
Q Consensus       237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~v  276 (333)
                      |||++++|.|++.+++..+++|+.+|..|+    ++.|.|
T Consensus       275 tPh~~~~t~~~~~~~~~~~~~nl~~~~~g~----~~~~~v  310 (311)
T 2cuk_A          275 TPHIGSAGRTTRERMAEVAVENLLAVLEGR----EPPNPV  310 (311)
T ss_dssp             CCSCTTCBHHHHHHHHHHHHHHHHHHHTTC----CCSSBC
T ss_pred             CCcCCCCCHHHHHHHHHHHHHHHHHHHcCC----CCCCcc
Confidence            999999999999999999999999988887    566654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=6.8e-61  Score=464.00  Aligned_cols=276  Identities=26%  Similarity=0.372  Sum_probs=253.0

Q ss_pred             CceEEEEe------CCCCCCHHHhcccC--cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhc
Q psy6348           1 KYDGLVVR------SDTKVTAEVLQASN--LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSR   72 (333)
Q Consensus         1 ~~daliv~------s~~~v~~~~l~~~~--Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R   72 (333)
                      ++|+++++      ..+++++++|+++|  ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|
T Consensus        51 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R  130 (348)
T 2w2k_A           51 DFEAIIKLAVENGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFR  130 (348)
T ss_dssp             CCSEEEECSTTTTGGGCCBCHHHHTTSCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEcccccccccCCCCHHHHHhcccCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHh
Confidence            46787764      24689999999985  99999999999999999999999999999999999999999999999999


Q ss_pred             CCCccchhhhcCc---ccccC----CCccccCCCEEEEEecChHHHHHHHHHh-hCCCEEEEEcCCC-CHHHHHhcCccc
Q psy6348          73 NVPQGCQSLKEGK---WDRKL----YTGTELYGKTLAVLGLGRIGREVALRMQ-AFGMKVIGFDPMV-SVEDAAKLNIAS  143 (333)
Q Consensus        73 ~i~~~~~~~~~g~---w~~~~----~~g~~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d~~~-~~~~a~~~gv~~  143 (333)
                      +++++++.+|+|.   |.+..    ..+.++.|+|+||||+|+||+.+|++++ ++||+|++||++. ..+.+.+.|+..
T Consensus       131 ~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~  210 (348)
T 2w2k_A          131 LASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAER  210 (348)
T ss_dssp             THHHHHHHHTTCCHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEE
T ss_pred             ChHHHHHHHHcCCCcccccccccccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEE
Confidence            9999999999999   94321    3578999999999999999999999999 9999999999987 445555668777


Q ss_pred             c-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC
Q psy6348         144 L-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS  222 (333)
Q Consensus       144 ~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~  222 (333)
                      . ++++++++||+|++|+|.+++|+++++++.++.||+|++|||++||+++|+++|.++|++|++.||++|||++||..+
T Consensus       211 ~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~  290 (348)
T 2w2k_A          211 VDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVS  290 (348)
T ss_dssp             CSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCC
T ss_pred             eCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCC
Confidence            6 899999999999999999999999999999999999999999999999999999999999999999999999998433


Q ss_pred             ccchhhcCCCcEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccCc
Q psy6348         223 EQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALAA  283 (333)
Q Consensus       223 ~~~~~L~~~pnvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~~  283 (333)
                         +||+++|||++|||+|++|.|++.+++..+++|+.+|..|+    ++.|.||.+.+++
T Consensus       291 ---~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~ni~~~~~g~----~~~~~v~~~~~~~  344 (348)
T 2w2k_A          291 ---KELIEMKHVTLTTHIGGVAIETFHEFERLTMTNIDRFLLQG----KPLLTPAGKVFAP  344 (348)
T ss_dssp             ---HHHHTSSSEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHTC----CCCSSBCSCCCCC
T ss_pred             ---chhhcCCCEEEcCcCCCCCHHHHHHHHHHHHHHHHHHHcCC----CCcceecccccCc
Confidence               68999999999999999999999999999999999987776    7889999987654

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=3e-61  Score=463.88  Aligned_cols=274  Identities=32%  Similarity=0.551  Sum_probs=255.6

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus        42 ~~d~~i~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~  121 (333)
T 2d0i_A           42 RFDGIIVSPTTKITREVLENAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADK  121 (333)
T ss_dssp             GCSEEEECTTSCBCHHHHTTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             CCEEEEECCCCCCCHHHHhhCCCceEEEECCcccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHH
Confidence            5799999988899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCccccc--CCCc----cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCC
Q psy6348          80 SLKEGKWDRK--LYTG----TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLA  153 (333)
Q Consensus        80 ~~~~g~w~~~--~~~g----~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~a  153 (333)
                      .+|+|.|.+.  .+.|    .++.|++|||||+|.||+.+|++++++||+|++||++...+.+.+.|+...++++++++|
T Consensus       122 ~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~a  201 (333)
T 2d0i_A          122 FIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKS  201 (333)
T ss_dssp             HHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHC
T ss_pred             HHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhC
Confidence            9999999641  2346    799999999999999999999999999999999999887655566777767899999999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCC-
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP-  232 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~p-  232 (333)
                      |+|++|+|.+++|+++++++.++.||+| +|||++||.++|+++|.++|++|+++||++|||++||+++   +||+++| 
T Consensus       202 DiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~---~~L~~~~~  277 (333)
T 2d0i_A          202 DIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVRE---HELFKYEW  277 (333)
T ss_dssp             SEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSC---CGGGGCTT
T ss_pred             CEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCC---chHHcCCC
Confidence            9999999999999999999999999999 9999999999999999999999999999999999999653   6899999 


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccccC
Q psy6348         233 KVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPALA  282 (333)
Q Consensus       233 nvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~~  282 (333)
                      ||++|||+++.|.|+..++++.+++|+.+|..|+    ++.|.||++.+.
T Consensus       278 nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~----~~~~~v~~~~~~  323 (333)
T 2d0i_A          278 ETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGE----VPEDLVNKEVLE  323 (333)
T ss_dssp             TEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTC----CCTTBSCTTHHH
T ss_pred             CEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCC----CCcCccCHHHhh
Confidence            9999999999999999999999999999998887    788999976544

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=5.5e-61  Score=456.58  Aligned_cols=265  Identities=23%  Similarity=0.300  Sum_probs=242.6

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++   .+.++|+++| ||+|++.|+|+||||++++ ++||.|+|+||+|+.+||||++++||+++|+++.+++
T Consensus        31 ~~d~~i~~~---~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~  106 (303)
T 1qp8_A           31 NVEAALVSR---ITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGE  106 (303)
T ss_dssp             TBCCCCBSC---CCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEECC---CCHHHHhhCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHH
Confidence            578888765   4579999999 9999999999999999884 8999999999999999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc-cccChhhhccCCCEEEE
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI-ASLGLEDIWPLADYITV  158 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv-~~~~l~ell~~aDvV~l  158 (333)
                      .+++|.|.+. ..+.++.|+|+||||+|+||+.+|+++++|||+|++|||+.. +.    +. ...++++++++||+|++
T Consensus       107 ~~~~g~w~~~-~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~~----~~~~~~~l~ell~~aDvV~l  180 (303)
T 1qp8_A          107 KMKRGDYGRD-VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-EG----PWRFTNSLEEALREARAAVC  180 (303)
T ss_dssp             HHHTTCCCCC-SCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-CS----SSCCBSCSHHHHTTCSEEEE
T ss_pred             HHHcCCCCCC-CCCCCCCCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-cc----CcccCCCHHHHHhhCCEEEE
Confidence            9999999753 234589999999999999999999999999999999999775 21    33 33589999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccC-CCCCCCCccchhhcCCCcEEEc
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF-CEEPPKSEQTFELIKHPKVIVT  237 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~-~~EP~~~~~~~~L~~~pnvi~T  237 (333)
                      |+|++++|+++++++.|+.||+|++|||+|||+++|+++|.++|++|+++||++||| ++||.+.  .+|||++||+++|
T Consensus       181 ~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~--~~~L~~~~nvilt  258 (303)
T 1qp8_A          181 ALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAK--DAEFFSLPNVVAT  258 (303)
T ss_dssp             CCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGG--GHHHHTSTTEEEC
T ss_pred             eCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCC--CChhhcCCCEEEC
Confidence            999999999999999999999999999999999999999999999999999999999 8899653  3799999999999


Q ss_pred             cCCCCC--cHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCccccccc
Q psy6348         238 PHLGAS--TKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPAL  281 (333)
Q Consensus       238 PHi~~~--t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~~  281 (333)
                      ||++++  |.|++.++++.+++|+.+|..|+    ++.|.||++.+
T Consensus       259 PH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~----~~~~~v~~~~y  300 (303)
T 1qp8_A          259 PWVAGGYGNERVWRQMVMEAVRNLITYATGG----RPRNIAKREDY  300 (303)
T ss_dssp             CSCSSSSSCHHHHHHHHHHHHHHHHHHHTTS----CCSCBCCGGGT
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHHHHHHcCC----CCCceeCHHHc
Confidence            999998  99999999999999999988887    78999998754

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.7e-60  Score=458.82  Aligned_cols=273  Identities=35%  Similarity=0.557  Sum_probs=254.5

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+++.+++
T Consensus        45 ~~d~~~~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~  124 (334)
T 2dbq_A           45 EVDALVTMLSERIDKEVFENAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDR  124 (334)
T ss_dssp             SCSEEEECTTSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CcEEEEEcCCCCCCHHHHhhCCCceEEEECCcccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHH
Confidence            5799999988899999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCccc----c---cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccC
Q psy6348          80 SLKEGKWD----R---KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPL  152 (333)
Q Consensus        80 ~~~~g~w~----~---~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~  152 (333)
                      .+++|.|.    .   ..+.+.++.|++|||||+|.||+.+|++++++|++|++||++...+.+.+.|+...++++++++
T Consensus       125 ~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~  204 (334)
T 2dbq_A          125 FVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRE  204 (334)
T ss_dssp             HHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHH
T ss_pred             HHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhh
Confidence            99999996    2   1234789999999999999999999999999999999999988665555667776789999999


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP  232 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~p  232 (333)
                      ||+|++|+|.+++|+++++++.++.||+|++|||++||.++++++|.++|++|+++||++|||++||+.   .+||+.+|
T Consensus       205 aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~---~~~L~~~~  281 (334)
T 2dbq_A          205 SDFVVLAVPLTRETYHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY---NEELFKLD  281 (334)
T ss_dssp             CSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCC---CHHHHHCT
T ss_pred             CCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCC---CchhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999933   37999999


Q ss_pred             cEEEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccccc
Q psy6348         233 KVIVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNAPA  280 (333)
Q Consensus       233 nvi~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~~~  280 (333)
                      ||++|||+|+.|.++..+++..+++|+.+|..|+    ++.|.||+..
T Consensus       282 ~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~----~~~~~v~~~~  325 (334)
T 2dbq_A          282 NVVLTPHIGSASFGAREGMAELVAKNLIAFKRGE----IPPTLVNREV  325 (334)
T ss_dssp             TEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTC----CCTTBSCTTH
T ss_pred             CEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCC----CCccccCHHH
Confidence            9999999999999999999999999999998887    7889999653

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=2.9e-59  Score=449.43  Aligned_cols=272  Identities=25%  Similarity=0.457  Sum_probs=252.7

Q ss_pred             CceEEEEeCCCCCCHHHhccc-C-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQAS-N-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGC   78 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~-~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~   78 (333)
                      ++|++++++.+++++++|+++ | ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+++.++
T Consensus        53 ~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~  132 (330)
T 2gcg_A           53 GAHGLLCLLSDHVDKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAI  132 (330)
T ss_dssp             TCSEEEECTTSCBCHHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             CCeEEEECCCCCCCHHHHHhcCCCceEEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHH
Confidence            579999988889999999998 8 99999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhcCccccc---CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCC
Q psy6348          79 QSLKEGKWDRK---LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLAD  154 (333)
Q Consensus        79 ~~~~~g~w~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aD  154 (333)
                      +.+++|.|.+.   .+.|.++.|+||||||+|.||+.+|++++++|++|++||++. ..+...+.|+...++++++++||
T Consensus       133 ~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aD  212 (330)
T 2gcg_A          133 EEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSD  212 (330)
T ss_dssp             HHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCS
T ss_pred             HHHHcCCCcccCcccccCcCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCC
Confidence            99999999642   245789999999999999999999999999999999999876 34555666776668999999999


Q ss_pred             EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcE
Q psy6348         155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV  234 (333)
Q Consensus       155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnv  234 (333)
                      +|++|+|.+++|+++++++.++.||+|++|||++||+++|+++|.++|++|++.||++|||++||.+.  .+||+++|||
T Consensus       213 vVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~--~~~l~~~~nv  290 (330)
T 2gcg_A          213 FIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPT--NHPLLTLKNC  290 (330)
T ss_dssp             EEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCT--TCGGGGCTTE
T ss_pred             EEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCC--CChhhcCCCE
Confidence            99999999999999999999999999999999999999999999999999999999999999999543  2699999999


Q ss_pred             EEccCCCCCcHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         235 IVTPHLGASTKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       235 i~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                      ++|||+|+.|.++..+++..+++|+.++..|+    ++.|.||.
T Consensus       291 i~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~----~~~~~v~~  330 (330)
T 2gcg_A          291 VILPHIGSATHRTRNTMSLLAANNLLAGLRGE----PMPSELKL  330 (330)
T ss_dssp             EECCSCTTCBHHHHHHHHHHHHHHHHHHHHTC----CCTTEECC
T ss_pred             EECCCCCCCcHHHHHHHHHHHHHHHHHHHcCC----CCCCCCCC
Confidence            99999999999999999999999999988887    77888873

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=5.6e-59  Score=453.72  Aligned_cols=241  Identities=30%  Similarity=0.447  Sum_probs=223.0

Q ss_pred             CceEEEEeCCCCCCHHHhcccCcceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchh
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS   80 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~   80 (333)
                      ++|++++++.+++++++|+..+||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||+++++|+++|+.      
T Consensus        40 ~ad~li~~~~~~v~~~ll~~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~------  113 (381)
T 3oet_A           40 HADALMVRSVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD------  113 (381)
T ss_dssp             TCSEEEECTTSCBSHHHHTTSCCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT------
T ss_pred             CCEEEEECCCCCCCHHHHcCCCCEEEEEccccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc------
Confidence            58999999999999999994449999999999999999999999999999999999999999999999999852      


Q ss_pred             hhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEec
Q psy6348          81 LKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHT  160 (333)
Q Consensus        81 ~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~  160 (333)
                                  |.+++|||+||||+|+||+.+|+++++|||+|++|||+..   ....+....++++++++||+|++|+
T Consensus       114 ------------g~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~---~~~~~~~~~sl~ell~~aDiV~l~~  178 (381)
T 3oet_A          114 ------------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRA---ARGDEGDFRTLDELVQEADVLTFHT  178 (381)
T ss_dssp             ------------TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHH---HTTCCSCBCCHHHHHHHCSEEEECC
T ss_pred             ------------CCccCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCChH---HhccCcccCCHHHHHhhCCEEEEcC
Confidence                        4689999999999999999999999999999999998431   1123455679999999999999999


Q ss_pred             CCchh----hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEE
Q psy6348         161 PLIPQ----TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV  236 (333)
Q Consensus       161 P~t~~----t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~  236 (333)
                      |++++    |+++++++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||++||+++   ++|+.++ +++
T Consensus       179 Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~---~~L~~~~-~i~  254 (381)
T 3oet_A          179 PLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLN---VALLEAV-DIG  254 (381)
T ss_dssp             CCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC---HHHHHHS-SEE
T ss_pred             cCCccccccchhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCc---chhhhCC-EEE
Confidence            99999    999999999999999999999999999999999999999999999999999999764   4688765 899


Q ss_pred             ccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         237 TPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       237 TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      |||+||+|.|++.++..++++|+.+|.++.
T Consensus       255 TPHiag~t~e~~~~~~~~~~~~l~~~l~~~  284 (381)
T 3oet_A          255 TSHIAGYTLEGKARGTTQVFEAYSAFIGRE  284 (381)
T ss_dssp             CSSCTTCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCccCcCcHHHHHHHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999998885

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=2.9e-59  Score=441.97  Aligned_cols=247  Identities=26%  Similarity=0.390  Sum_probs=224.1

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++|+ +.+++      ++| ||+|++.|+|+||||+++|+++||.+.| ++.|+.+||||++++||++.|+++.+++
T Consensus        34 ~ad~li~-~~~~~------~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~  105 (290)
T 3gvx_A           34 DAEAQVI-KDRYV------LGKRTKMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNE  105 (290)
T ss_dssp             CCSEEEE-SSCCC------CCSSCCEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHH
T ss_pred             hhhhhhh-hhhhh------hhhhhHHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhh
Confidence            5899998 34443      678 9999999999999999999887665555 5889999999999999999999999999


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEE
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITV  158 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l  158 (333)
                      .+++|+|.+..  ..++.|||+||||+|+||+++|+++++|||+|++|||+.....    .+... ++++++++||+|++
T Consensus       106 ~~~~g~w~~~~--~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~----~~~~~~~l~ell~~aDiV~l  179 (290)
T 3gvx_A          106 LMKAGIFRQSP--TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQN----VDVISESPADLFRQSDFVLI  179 (290)
T ss_dssp             HHHTTCCCCCC--CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTT----CSEECSSHHHHHHHCSEEEE
T ss_pred             HhhhcccccCC--ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccc----cccccCChHHHhhccCeEEE
Confidence            99999998653  3789999999999999999999999999999999999764321    13344 89999999999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEcc
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTP  238 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TP  238 (333)
                      |+|++++|+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||++|||++||.     +|||++|||++||
T Consensus       180 ~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP~-----~pL~~~~nvilTP  254 (290)
T 3gvx_A          180 AIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPE-----ITETNLRNAILSP  254 (290)
T ss_dssp             CCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTS-----CCSCCCSSEEECC
T ss_pred             EeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccCCcc-----cchhhhhhhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999999996     4899999999999


Q ss_pred             CCC-CCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         239 HLG-ASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       239 Hi~-~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      |+| ++|.|+..++.+.+++|+.+|..|+
T Consensus       255 Hiag~~t~e~~~~~~~~~~~ni~~~~~~~  283 (290)
T 3gvx_A          255 HVAGGMSGEIMDIAIQLAFENVRNFFEGE  283 (290)
T ss_dssp             SCSSCBTTBCCHHHHHHHHHHHHHHTC--
T ss_pred             cccCCccchHHHHHHHHHHHHHHhhhcCC
Confidence            999 9999999999999999999988875

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.4e-56  Score=437.42  Aligned_cols=240  Identities=30%  Similarity=0.431  Sum_probs=223.5

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+ +| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||++.|+      
T Consensus        37 ~ad~li~~~~~~~~~~~l~-~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~------  109 (380)
T 2o4c_A           37 EVDVLLVRSVTEVSRAALA-GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV------  109 (380)
T ss_dssp             TCSEEEECTTSCBCHHHHT-TSCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHH------
T ss_pred             CcEEEEEcCCCCCCHHHhc-CCCceEEEEcCcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhh------
Confidence            5899999998999999999 78 999999999999999999999999999999999999999999999999986      


Q ss_pred             hhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEe
Q psy6348          80 SLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVH  159 (333)
Q Consensus        80 ~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~  159 (333)
                            |      +.++.|+||||||+|+||+.+|++|++|||+|++|||+...   ...+....++++++++||+|++|
T Consensus       110 ------~------~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~~g~~~~~l~ell~~aDvV~l~  174 (380)
T 2o4c_A          110 ------R------GADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQA---REPDGEFVSLERLLAEADVISLH  174 (380)
T ss_dssp             ------H------TCCGGGCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHH---HSTTSCCCCHHHHHHHCSEEEEC
T ss_pred             ------h------hcccCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhh---hccCcccCCHHHHHHhCCEEEEe
Confidence                  2      35899999999999999999999999999999999985421   13455567899999999999999


Q ss_pred             cCCchh----hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEE
Q psy6348         160 TPLIPQ----TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI  235 (333)
Q Consensus       160 ~P~t~~----t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi  235 (333)
                      +|++++    |+++++++.|+.||+|++|||+|||+++|+++|+++|++|++.||+||||++||+++   ++|+. +||+
T Consensus       175 ~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~---~~l~~-~nvi  250 (380)
T 2o4c_A          175 TPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQAD---PELAA-RCLI  250 (380)
T ss_dssp             CCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCC---HHHHT-TCSE
T ss_pred             ccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCc---hhhcc-CCEE
Confidence            999999    999999999999999999999999999999999999999999999999999999654   57777 5999


Q ss_pred             EccCCCCCcHHHHHHHHHHHHHHHHHhHcCC
Q psy6348         236 VTPHLGASTKEAQIRVAVEIAEQFIALANTN  266 (333)
Q Consensus       236 ~TPHi~~~t~ea~~~~~~~~~~~i~~~~~~~  266 (333)
                      +|||+|++|.|+..++...+++|+.++.+|+
T Consensus       251 ~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~  281 (380)
T 2o4c_A          251 ATPHIAGYSLEGKLRGTAQIYQAYCAWRGIA  281 (380)
T ss_dssp             ECSSCTTCCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             EccccCcCCHHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999998886

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=5.8e-40  Score=329.01  Aligned_cols=234  Identities=17%  Similarity=0.134  Sum_probs=198.2

Q ss_pred             CCHHHhcccCcceEE-EcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCC
Q psy6348          13 VTAEVLQASNLQVVG-RAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLY   91 (333)
Q Consensus        13 v~~~~l~~~~Lk~I~-~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~   91 (333)
                      +..+++  .++|.|+ .+++|+|++  ++|+++||.|+|+|++|. +|||+.       +|++....+.++.| |.+  +
T Consensus       206 ~~~~l~--~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~--~  270 (494)
T 3d64_A          206 WYSKRL--AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR--A  270 (494)
T ss_dssp             TTHHHH--TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH--H
T ss_pred             hHHHHh--hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh--c
Confidence            344554  2388888 789999998  789999999999999999 999953       46666666677777 864  4


Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+.++.|||+||||+|.||+.+|+++++|||+|++||++.... .+...|++..++++++++||+|++|+    .|+++|
T Consensus       271 ~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI  346 (494)
T 3d64_A          271 TDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVI  346 (494)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSB
T ss_pred             cccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----Cccccc
Confidence            5789999999999999999999999999999999999976432 34556887789999999999999997    688999


Q ss_pred             cHHHHhccCCCcEEEEccCCcc-cchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCC--CcEEEccCCC-CCcHH
Q psy6348         171 NAEVLKKCKKGVRVVNVARGGI-VDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH--PKVIVTPHLG-ASTKE  246 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~~-vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~--pnvi~TPHi~-~~t~e  246 (333)
                      +++.|+.||+|++|||++||++ ||+++| +||++|+|+ +++|+|   |.++  .+||+.+  |||++| |+| +++.+
T Consensus       347 ~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~---plp~--~~pL~~l~~~nvv~t-H~atg~~~~  418 (494)
T 3d64_A          347 NHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHI---IFPD--GKRVILLAEGRLVNL-GCATGHPSF  418 (494)
T ss_dssp             CHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEE---ECTT--SCEEEEEGGGSBHHH-HTSCCSCHH
T ss_pred             CHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEE---ECCC--CCchhhcCCCCEEEE-eCcCCCCHH
Confidence            9999999999999999999999 699999 999999997 555554   5432  2588888  999999 999 66744


Q ss_pred             -HHHHHHHHHHHHHHHhHcCCCCCCCCCCccc
Q psy6348         247 -AQIRVAVEIAEQFIALANTNPQYTSIQGVLN  277 (333)
Q Consensus       247 -a~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn  277 (333)
                       .+.+++..+++|+..|..|+    +++|.|+
T Consensus       419 ~~~~~~a~~~~~ni~~~~~g~----~~~n~V~  446 (494)
T 3d64_A          419 VMSNSFTNQTLAQIELFTRGG----EYANKVY  446 (494)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGG----GSCSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCC----CCCCcee
Confidence             78899999999999988877    7888886

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=1.6e-37  Score=310.35  Aligned_cols=220  Identities=19%  Similarity=0.187  Sum_probs=195.1

Q ss_pred             cceEE-EcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEE
Q psy6348          23 LQVVG-RAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTL  101 (333)
Q Consensus        23 Lk~I~-~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktv  101 (333)
                      ++.|. .+++|+|++  ++|+++||.|+|+|++|. +++|       +++|++....+.+++| |.+  +.+.++.||++
T Consensus       194 l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r--~~~~~l~GktV  260 (479)
T 1v8b_A          194 IIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR--ATDFLISGKIV  260 (479)
T ss_dssp             CCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH--HHCCCCTTSEE
T ss_pred             eEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh--ccccccCCCEE
Confidence            88888 789999998  789999999999999999 9999       4568888888888888 965  45779999999


Q ss_pred             EEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCC
Q psy6348         102 AVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK  180 (333)
Q Consensus       102 GIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~  180 (333)
                      ||||+|.||+.+|+++++|||+|++||++.... .+...|++..++++++++||+|++|+    .|+++|+++.|+.||+
T Consensus       261 gIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~MK~  336 (479)
T 1v8b_A          261 VICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLEHLLKMKN  336 (479)
T ss_dssp             EEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHHHHTTCCT
T ss_pred             EEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHHHHhhcCC
Confidence            999999999999999999999999999987442 45567887789999999999999995    7899999999999999


Q ss_pred             CcEEEEccCCcc-cchHhHHh--hhhcCCceEEEeccCCCCCCCCccchhhcCC--CcEEEccCCC-CCcHH-HHHHHHH
Q psy6348         181 GVRVVNVARGGI-VDENALLD--SLKCGHCGGAALDVFCEEPPKSEQTFELIKH--PKVIVTPHLG-ASTKE-AQIRVAV  253 (333)
Q Consensus       181 gailIN~aRg~~-vd~~aL~~--aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~--pnvi~TPHi~-~~t~e-a~~~~~~  253 (333)
                      |++|||++||++ ||+++|.+  +|++|+|+ +++|||+.++  .   +||+.+  ||+++| |+| +++.+ .+.+++.
T Consensus       337 gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~--~---~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~  409 (479)
T 1v8b_A          337 NAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPN--G---NKIIVLARGRLLNL-GCATGHPAFVMSFSFCN  409 (479)
T ss_dssp             TCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTT--S---CEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHH
T ss_pred             CcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCC--C---CeeeEecCCCEEEE-eccCCCCchhHHHHHHH
Confidence            999999999999 99999999  99999998 9999984422  2   578777  999999 999 67766 7889999


Q ss_pred             HHHHHHHHhHcCC
Q psy6348         254 EIAEQFIALANTN  266 (333)
Q Consensus       254 ~~~~~i~~~~~~~  266 (333)
                      .+++|+..|.+|+
T Consensus       410 ~~~~ni~~~~~g~  422 (479)
T 1v8b_A          410 QTFAQLDLWQNKD  422 (479)
T ss_dssp             HHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCC
Confidence            9999999988774

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=1.3e-28  Score=231.98  Aligned_cols=163  Identities=22%  Similarity=0.226  Sum_probs=142.5

Q ss_pred             CceEEEEe----------------CCCCCCHHHhcccC-cceEEEcccCcCccCh-hhHhhCCcEEEECC------CCCc
Q psy6348           1 KYDGLVVR----------------SDTKVTAEVLQASN-LQVVGRAGTGVDNIDL-TAATRKGVLVLNAP------GGNF   56 (333)
Q Consensus         1 ~~daliv~----------------s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~-~aa~~~gI~V~n~p------~~n~   56 (333)
                      ++|+++++                +.+++++++|+.+| ||+|+   +|+||+|+ ++|+++||.|+|+|      ++|+
T Consensus        58 ~~d~ii~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~  134 (293)
T 3d4o_A           58 TVDAILLPISGTNEAGKVDTIFSNESIVLTEEMIEKTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNS  134 (293)
T ss_dssp             GCSEEECCTTCCCTTCBCCBSSCSCCCBCCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHH
T ss_pred             cCCEEEeccccccCCceeecccccCCccchHHHHHhCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeecc
Confidence            47888875                45678999999999 99997   89999998 89999999999998      8899


Q ss_pred             hHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH
Q psy6348          57 ISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED  135 (333)
Q Consensus        57 ~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~  135 (333)
                      .++||++++++|..                     .+.++.|+++||||+|.||+.+|++++++|++|++|||+... +.
T Consensus       135 ~svae~a~~~~l~~---------------------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~  193 (293)
T 3d4o_A          135 IPTAEGTIMMAIQH---------------------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLAR  193 (293)
T ss_dssp             HHHHHHHHHHHHHH---------------------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred             HhHHHHHHHHHHHh---------------------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence            99999999999863                     246799999999999999999999999999999999997633 33


Q ss_pred             HHhcCccc---cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348         136 AAKLNIAS---LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       136 a~~~gv~~---~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      +.+.|+..   .++++++++||+|++|+|.     ++++++.++.||+|+++||++||..
T Consensus       194 ~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          194 IAEMGMEPFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             HHHTTSEEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             HHHCCCeecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            45567654   3688999999999999995     7889999999999999999999754

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.94  E-value=7.1e-29  Score=249.21  Aligned_cols=225  Identities=19%  Similarity=0.146  Sum_probs=181.6

Q ss_pred             eEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEE
Q psy6348          25 VVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVL  104 (333)
Q Consensus        25 ~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGII  104 (333)
                      ++-.+|+|+|++  .++.++||.++|+++.|. ++||+.       +|++......+..+ |.+  ..+..+.|++|+|+
T Consensus       214 vveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g-~~r--~~~~~l~GktV~Ii  280 (494)
T 3ce6_A          214 VTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG-INR--GTDALIGGKKVLIC  280 (494)
T ss_dssp             EEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH-HHH--HHCCCCTTCEEEEE
T ss_pred             EEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH-HHh--ccCCCCCcCEEEEE
Confidence            445789999998  778999999999999999 999953       34444444444433 543  23457899999999


Q ss_pred             ecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcE
Q psy6348         105 GLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR  183 (333)
Q Consensus       105 GlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gai  183 (333)
                      |+|.||+.+|++++++|++|++||++... +.+.+.|+...+++++++++|+|+.|++    +.++++.+.++.||+|++
T Consensus       281 G~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk~ggi  356 (494)
T 3ce6_A          281 GYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIMLEHIKAMKDHAI  356 (494)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSCTTCE
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcCCCcE
Confidence            99999999999999999999999997633 5567788877789999999999999975    456888899999999999


Q ss_pred             EEEccCCcc-cchHhHHh-hhhcCCceEEEeccCCCCCCCCccchhhcCCCcEE----EccCCCCCcHHHHHHHHHHHHH
Q psy6348         184 VVNVARGGI-VDENALLD-SLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI----VTPHLGASTKEAQIRVAVEIAE  257 (333)
Q Consensus       184 lIN~aRg~~-vd~~aL~~-aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi----~TPHi~~~t~ea~~~~~~~~~~  257 (333)
                      ++|++|++. +|.++|.+ +|+++++. +++|+|+.+|...+  ..|+..+|++    +|||+++.+.++.   ..++.+
T Consensus       357 lvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~--l~LL~~grlvnL~~~TPH~a~~~~~s~---~~qa~~  430 (494)
T 3ce6_A          357 LGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRS--IIVLSEGRLLNLGNATGHPSFVMSNSF---ANQTIA  430 (494)
T ss_dssp             EEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCE--EEEEGGGSCHHHHHSCCSCHHHHHHHH---HHHHHH
T ss_pred             EEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchH--HHHHhCCCEEeccCCCCCccccchHHH---HHHHHH
Confidence            999999999 99999998 89889987 67899876331222  2477788998    9999998887763   778899


Q ss_pred             HHHHhHcCCCCCCCCCCcc
Q psy6348         258 QFIALANTNPQYTSIQGVL  276 (333)
Q Consensus       258 ~i~~~~~~~~~~~~~~~~v  276 (333)
                      ++..+..|+    .+.+.|
T Consensus       431 ai~~~~~g~----~~~~~V  445 (494)
T 3ce6_A          431 QIELWTKND----EYDNEV  445 (494)
T ss_dssp             HHHHHHTGG----GCCSSE
T ss_pred             HHHHHHcCC----CCCCEE
Confidence            999988876    555555

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.93  E-value=3.1e-26  Score=216.33  Aligned_cols=168  Identities=18%  Similarity=0.218  Sum_probs=136.7

Q ss_pred             CceEEEE----eC----------CCC--CCHHHhcccC-cceEEEcccCcCccC-hhhHhhCCcEEEECCCCCchHHHHH
Q psy6348           1 KYDGLVV----RS----------DTK--VTAEVLQASN-LQVVGRAGTGVDNID-LTAATRKGVLVLNAPGGNFISACEL   62 (333)
Q Consensus         1 ~~daliv----~s----------~~~--v~~~~l~~~~-Lk~I~~~g~G~d~iD-~~aa~~~gI~V~n~p~~n~~avAE~   62 (333)
                      ++|++++    ..          .++  +++++++.+| +|+|+   +|+||+| +++|+++||.|+|+|+.+  ++   
T Consensus        60 ~~d~ii~~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---  131 (300)
T 2rir_A           60 QIDSIILPVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---  131 (300)
T ss_dssp             GCSEEECCSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---
T ss_pred             cCCEEEeccccccCCcccccccccCCccchHHHHhhcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---
Confidence            4788887    21          456  8999999999 99998   8999999 999999999999999975  22   


Q ss_pred             HHHHHHHHhcCCCccchhhhcCccccc-CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcC
Q psy6348          63 TCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLN  140 (333)
Q Consensus        63 ~l~l~l~~~R~i~~~~~~~~~g~w~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g  140 (333)
                            ++.|+++.+     +|.|... .+.+.++.|+|+||||+|.||+.+|++++++|++|++|||+... +...+.|
T Consensus       132 ------~~~r~~~~~-----~g~~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g  200 (300)
T 2rir_A          132 ------AIYNSIPTV-----EGTIMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMG  200 (300)
T ss_dssp             ------HHHHHHHHH-----HHHHHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT
T ss_pred             ------EEEcCccHH-----HHHHHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC
Confidence                  234544333     4667532 23578999999999999999999999999999999999997632 2234456


Q ss_pred             ccc---cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348         141 IAS---LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       141 v~~---~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      ++.   .++++++++||+|++|+|.     ++++++.++.||+|+++||++||..
T Consensus       201 ~~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          201 LVPFHTDELKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             CEEEEGGGHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             CeEEchhhHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            643   4789999999999999996     6889999999999999999999854

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.91  E-value=7.5e-24  Score=206.52  Aligned_cols=214  Identities=15%  Similarity=0.139  Sum_probs=163.4

Q ss_pred             ceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEE----------ECCCCCchHHHHHHHHHHHHH
Q psy6348           2 YDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVL----------NAPGGNFISACELTCSLISAL   70 (333)
Q Consensus         2 ~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~----------n~p~~n~~avAE~~l~l~l~~   70 (333)
                      +|.| +....++++|+....+ ..++.....++|...++++.++||.++          |.|..+  +.||++..+.+.+
T Consensus        68 adii-~~vk~p~~~e~~~l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~~~  144 (377)
T 2vhw_A           68 ADLL-LKVKEPIAAEYGRLRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAAQV  144 (377)
T ss_dssp             CSEE-ECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHHHH
T ss_pred             CCEE-EEeCCCChHHHhhcCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHHHH
Confidence            6754 6667788888887777 999999889999999999999999998          566654  5569998554444


Q ss_pred             h-cCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-cCcc-----
Q psy6348          71 S-RNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-LNIA-----  142 (333)
Q Consensus        71 ~-R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~gv~-----  142 (333)
                      . |++..    .+.|+|.... ...++.|++++|+|+|.||+.+|+.++++|++|++||++... +.+++ .|..     
T Consensus       145 a~r~l~~----~~~g~~~~~~-~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~  219 (377)
T 2vhw_A          145 GAYHLMR----TQGGRGVLMG-GVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRY  219 (377)
T ss_dssp             HHHHTSG----GGTSCCCCTT-CBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEE
T ss_pred             HHHHHHH----hcCCCccccc-CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEecc
Confidence            3 77743    3334432111 124789999999999999999999999999999999997633 33333 4543     


Q ss_pred             --ccChhhhccCCCEEEEec--CCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC-
Q psy6348         143 --SLGLEDIWPLADYITVHT--PLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE-  217 (333)
Q Consensus       143 --~~~l~ell~~aDvV~l~~--P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~-  217 (333)
                        ..+++++++++|+|+.++  |.+ ++.+++.++.++.||+|++|||++..             .|.       ||+. 
T Consensus       220 ~~~~~l~~~l~~aDvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~-------------~Gg-------v~e~~  278 (377)
T 2vhw_A          220 SSAYELEGAVKRADLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAID-------------QGG-------CFEGS  278 (377)
T ss_dssp             CCHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGG-------------TTC-------SBTTC
T ss_pred             CCHHHHHHHHcCCCEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecC-------------CCC-------ccccc
Confidence              235778889999999976  554 68899999999999999999999821             121       6877 


Q ss_pred             CCCCCccchhhcCCCcEE--EccCCCCCcHH
Q psy6348         218 EPPKSEQTFELIKHPKVI--VTPHLGASTKE  246 (333)
Q Consensus       218 EP~~~~~~~~L~~~pnvi--~TPHi~~~t~e  246 (333)
                      ||.+.+  +|++..+||+  +|||+++.+..
T Consensus       279 ep~~~~--~~~~~~~~v~i~~~phl~~~~~~  307 (377)
T 2vhw_A          279 RPTTYD--HPTFAVHDTLFYCVANMPASVPK  307 (377)
T ss_dssp             CCBCSS--SCEEEETTEEEECBTTGGGGSHH
T ss_pred             cCCCCC--CCEEEECCEEEEecCCcchhhHH
Confidence            875432  5889999998  99999998876

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.83  E-value=1.8e-21  Score=192.00  Aligned_cols=155  Identities=23%  Similarity=0.347  Sum_probs=123.0

Q ss_pred             ccc-cCCCEEEEEecChHHHHHHHHHhh-CCCEEEEE-cCCCCHHHHHhcCccccChhhhccCCCE-EEEecCCchhhHh
Q psy6348          93 GTE-LYGKTLAVLGLGRIGREVALRMQA-FGMKVIGF-DPMVSVEDAAKLNIASLGLEDIWPLADY-ITVHTPLIPQTKN  168 (333)
Q Consensus        93 g~~-l~gktvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~~a~~~gv~~~~l~ell~~aDv-V~l~~P~t~~t~~  168 (333)
                      |.+ |+|||+||+|+|+||+.+|+++++ |||+|++| |++..     ..+...++++++++.+|. .++ +|+ ++|++
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~-----~~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~~  278 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG-----IYNPDGLNADEVLKWKNEHGSV-KDF-PGATN  278 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE-----EEEEEEECHHHHHHHHHHHSSS-TTC-TTSEE
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc-----ccCccCCCHHHHHHHHHhcCEe-ecC-ccCee
Confidence            567 999999999999999999999999 99999999 55421     111122356666664443 222 566 57888


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCC----C---
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL----G---  241 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi----~---  241 (333)
                       ++.+.|..||+ .+|||++||.+||+++ +++|+++.|.+++     +||.+. ..++|+.++||++|||+    |   
T Consensus       279 -i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~-~a~~ll~~~~V~itPhiaaNaGGvt  349 (419)
T 1gtm_A          279 -ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTP-EADEILFEKGILQIPDFLCNAGGVT  349 (419)
T ss_dssp             -ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCH-HHHHHHHHTTCEEECHHHHTTHHHH
T ss_pred             -eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCc-chHHHHhcCCEEEECchhhhCCcce
Confidence             88889999998 5999999999999999 6999999999887     888652 23689999999999999    6   


Q ss_pred             --------------CCcHHHHHHHHHHHHHHHHHhH
Q psy6348         242 --------------ASTKEAQIRVAVEIAEQFIALA  263 (333)
Q Consensus       242 --------------~~t~ea~~~~~~~~~~~i~~~~  263 (333)
                                    +++.|...++...+.+++.++.
T Consensus       350 ~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~  385 (419)
T 1gtm_A          350 VSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY  385 (419)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence                          6678888888887777777743

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.79  E-value=1.9e-19  Score=174.75  Aligned_cols=245  Identities=16%  Similarity=0.115  Sum_probs=159.5

Q ss_pred             CceEEEEeCCCCCCHHHhccc-C-cceEEEcccCcCccChhhHhhCCcEEE---ECCCC-Cc----hHHHHHHH--HHHH
Q psy6348           1 KYDGLVVRSDTKVTAEVLQAS-N-LQVVGRAGTGVDNIDLTAATRKGVLVL---NAPGG-NF----ISACELTC--SLIS   68 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~-~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~---n~p~~-n~----~avAE~~l--~l~l   68 (333)
                      ++|.|+ ....++.++ ++.. + +++++....+.|..+++++.++||.++   +.+.. ..    .+++|.+-  +.++
T Consensus        65 ~ad~il-~vk~p~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~  142 (369)
T 2eez_A           65 GAEMVV-KVKEPLPEE-YGFLREGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQV  142 (369)
T ss_dssp             TSSEEE-CSSCCCGGG-GGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHH
T ss_pred             cCCEEE-EECCCCHHH-HhhcCCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHH
Confidence            467654 656666555 5664 5 999999999999999999999999998   44432 12    34454443  4444


Q ss_pred             HHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-cCcc----
Q psy6348          69 ALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-LNIA----  142 (333)
Q Consensus        69 ~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-~gv~----  142 (333)
                      ++. .+.....  ..+.|..   ...++.+++++|+|.|.||+.+|+.++++|++|+++|++... +.+.+ .|..    
T Consensus       143 a~~-~l~~~~~--g~~~~~~---~~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~  216 (369)
T 2eez_A          143 GAQ-FLEKPKG--GRGVLLG---GVPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITL  216 (369)
T ss_dssp             HHH-HTSGGGT--SCCCCTT---CBTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEE
T ss_pred             HHH-HHHHhcC--CCceecC---CCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEe
Confidence            433 3433321  1122321   124789999999999999999999999999999999997532 23333 4442    


Q ss_pred             ---ccChhhhccCCCEEEEecCCch-hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC
Q psy6348         143 ---SLGLEDIWPLADYITVHTPLIP-QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE  218 (333)
Q Consensus       143 ---~~~l~ell~~aDvV~l~~P~t~-~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E  218 (333)
                         ..+++++++++|+|+.|++... .+..++.++.++.||+|.++||++-.             .|   |+ +|++  |
T Consensus       217 ~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~-------------~g---g~-~d~~--e  277 (369)
T 2eez_A          217 TATEANIKKSVQHADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVD-------------QG---GC-VETI--R  277 (369)
T ss_dssp             ECCHHHHHHHHHHCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC------------------------------
T ss_pred             cCCHHHHHHHHhCCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecC-------------CC---CC-CCcc--c
Confidence               2257788899999999998765 57788899999999999999999721             12   44 9998  5


Q ss_pred             CCCCccchhhcCCCcEE---------EccCCCCC--cHHHHHHHHHHHHHHHHHhHcCCCCCCCCCCcccc
Q psy6348         219 PPKSEQTFELIKHPKVI---------VTPHLGAS--TKEAQIRVAVEIAEQFIALANTNPQYTSIQGVLNA  278 (333)
Q Consensus       219 P~~~~~~~~L~~~pnvi---------~TPHi~~~--t~ea~~~~~~~~~~~i~~~~~~~~~~~~~~~~vn~  278 (333)
                      |.+.+  .|++..+|+.         .|||.++.  +.+....+...+.+++..+..+.    .+++.+|.
T Consensus       278 p~~~~--~~~~~~~~v~~~~v~~lp~~~p~~as~~~~~~~~~~l~~l~~~g~~~~~~~~----~l~~~~~~  342 (369)
T 2eez_A          278 PTTHA--EPTYVVDGVVHYGVANMPGAVPRTSTFALTNQTLPYVLKLAEKGLDALLEDA----ALLKGLNT  342 (369)
T ss_dssp             ----------CEETTEEEECCSCSGGGSHHHHHHHHHHHHHHHHHHHHHHTTHHHHSCH----HHHTTEEE
T ss_pred             CCCCC--CCEEEECCEEEEeeCCcchhcHHHHHHHHHHHHHHHHHHHHhcChhhhhcCh----HHhcCEEe
Confidence            64322  4788889999         78998874  56667778888888874466664    56666664

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.78  E-value=5.7e-19  Score=174.00  Aligned_cols=155  Identities=20%  Similarity=0.213  Sum_probs=121.9

Q ss_pred             cccCcCccC-hhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC
Q psy6348          29 AGTGVDNID-LTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG  107 (333)
Q Consensus        29 ~g~G~d~iD-~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG  107 (333)
                      +++|+.... +.++.+.+|+|+|.+.+.+.+..+...+.--++.+.+       +       ...+.++.||++||+|+|
T Consensus       155 TttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi-------~-------ratg~~L~GktVgIiG~G  220 (436)
T 3h9u_A          155 TTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI-------K-------RATDVMIAGKTACVCGYG  220 (436)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH-------H-------HHHCCCCTTCEEEEECCS
T ss_pred             cCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHH-------H-------HhcCCcccCCEEEEEeeC
Confidence            577776653 3456789999999987666664443333222221111       0       013578999999999999


Q ss_pred             hHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348         108 RIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       108 ~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN  186 (333)
                      .||+.+|++|+++|++|++||+++. ...+...|++..++++++++||+|+++    +.|+++|+++.|+.||+|++|||
T Consensus       221 ~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~ADVVilt----~gt~~iI~~e~l~~MK~gAIVIN  296 (436)
T 3h9u_A          221 DVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEAHIFVTT----TGNDDIITSEHFPRMRDDAIVCN  296 (436)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCTTTGGGCCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhCCEEEEC----CCCcCccCHHHHhhcCCCcEEEE
Confidence            9999999999999999999999763 234566788888999999999999973    46889999999999999999999


Q ss_pred             ccCCcc-cchHhHHhh
Q psy6348         187 VARGGI-VDENALLDS  201 (333)
Q Consensus       187 ~aRg~~-vd~~aL~~a  201 (333)
                      +|||.+ ||.++|.+.
T Consensus       297 vgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          297 IGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             CSSSGGGBCHHHHHHH
T ss_pred             eCCCCCccCHHHHHhh
Confidence            999997 999999864

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.75  E-value=1e-18  Score=171.63  Aligned_cols=185  Identities=16%  Similarity=0.180  Sum_probs=131.3

Q ss_pred             ceEEEEeCCCCCCHHHhccc-C-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHH---HHHhcCCCc
Q psy6348           2 YDGLVVRSDTKVTAEVLQAS-N-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLI---SALSRNVPQ   76 (333)
Q Consensus         2 ~daliv~s~~~v~~~~l~~~-~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~---l~~~R~i~~   76 (333)
                      +|+++ ....+ +++.++.. + +++|+..+.|+|++|++++.++||.|++..     +++|++.++.   ++..+.+..
T Consensus        73 adiil-~vk~p-~~~~i~~l~~~~~li~~~~~~~d~~~~~al~~~gI~v~~~e-----~v~~~~~a~~l~~l~~~a~~ag  145 (401)
T 1x13_A           73 SEIIL-KVNAP-LDDEIALLNPGTTLVSFIWPAQNPELMQKLAERNVTVMAMD-----SVPRISRAQSLDALSSMANIAG  145 (401)
T ss_dssp             SSEEE-CSSCC-CHHHHTTCCTTCEEEECCCGGGCHHHHHHHHHTTCEEEEGG-----GCCCSGGGGGGCHHHHHHHHHH
T ss_pred             CCeEE-EeCCC-CHHHHHHhcCCCcEEEEecCCCCHHHHHHHHHCCCEEEEee-----hhhhhhhhcccchHHHHHHHHH
Confidence            57755 33444 56777876 5 999999999999999999999999998653     3333333321   111111111


Q ss_pred             cchhhhcCcccccC-CCc-----cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----
Q psy6348          77 GCQSLKEGKWDRKL-YTG-----TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----  144 (333)
Q Consensus        77 ~~~~~~~g~w~~~~-~~g-----~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----  144 (333)
                       +..++.+.|.... +.+     .++.|++|+|+|+|.||..+++.++++|++|+++|++.. .+.++++|..++     
T Consensus       146 -~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~  224 (401)
T 1x13_A          146 -YRAIVEAAHEFGRFFTGQITAAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFK  224 (401)
T ss_dssp             -HHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC---
T ss_pred             -HHHHHHHHHhcccccCCceeeccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEeccc
Confidence             2222222221111 111     158899999999999999999999999999999999863 345566776543     


Q ss_pred             -----------------------ChhhhccCCCEEEEe--cCCchhhHhhccHHHHhccCCCcEEEEcc--CCcccch
Q psy6348         145 -----------------------GLEDIWPLADYITVH--TPLIPQTKNLINAEVLKKCKKGVRVVNVA--RGGIVDE  195 (333)
Q Consensus       145 -----------------------~l~ell~~aDvV~l~--~P~t~~t~~li~~~~~~~mk~gailIN~a--Rg~~vd~  195 (333)
                                             +++++++++|+|+.|  +|.. .+..+++++.++.||+|++|||++  ||+.+++
T Consensus       225 ~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~-~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          225 EEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGK-PAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             -----CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTS-CCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             ccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence                                   267888899999999  5532 356888999999999999999999  8887665

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.74  E-value=6.3e-18  Score=166.63  Aligned_cols=154  Identities=20%  Similarity=0.187  Sum_probs=116.7

Q ss_pred             cccCcCccC-hhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC
Q psy6348          29 AGTGVDNID-LTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG  107 (333)
Q Consensus        29 ~g~G~d~iD-~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG  107 (333)
                      +++|+-..- +.......++++|...+    +..+-+-....+.+.+..+..          ...+.++.|||+||+|+|
T Consensus       191 TtTGv~rL~~m~~~g~L~~PvinVnds----~tK~~fDn~yG~~eslvdgI~----------Ratg~~L~GKTVgVIG~G  256 (464)
T 3n58_A          191 TTTGVNRLYQLQKKGLLPFPAINVNDS----VTKSKFDNKYGCKESLVDGIR----------RGTDVMMAGKVAVVCGYG  256 (464)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECTTS----HHHHTTHHHHHHHHHHHHHHH----------HHHCCCCTTCEEEEECCS
T ss_pred             cccchHHHHHHHHcCCCCCCEEeeccH----hhhhhhhhhhcchHHHHHHHH----------HhcCCcccCCEEEEECcC
Confidence            577776652 33445678899998653    334433333332222111110          123678999999999999


Q ss_pred             hHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348         108 RIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       108 ~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN  186 (333)
                      .||+.+|+++++|||+|+++|+.+. ...+...|++..++++++++||+|+++.    .|+++|+++.|+.||+|++|||
T Consensus       257 ~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GAILIN  332 (464)
T 3n58_A          257 DVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMCIVGN  332 (464)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCeEEEE
Confidence            9999999999999999999988652 2344567888889999999999999864    4689999999999999999999


Q ss_pred             ccCCcc-cchHhHHh
Q psy6348         187 VARGGI-VDENALLD  200 (333)
Q Consensus       187 ~aRg~~-vd~~aL~~  200 (333)
                      ++||.+ +|.++|.+
T Consensus       333 vGRgdvEID~~aL~~  347 (464)
T 3n58_A          333 IGHFDNEIQVAALRN  347 (464)
T ss_dssp             CSSSTTTBTCGGGTT
T ss_pred             cCCCCcccCHHHHHh
Confidence            999998 99999974

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.72  E-value=9.2e-18  Score=163.75  Aligned_cols=188  Identities=15%  Similarity=0.175  Sum_probs=130.3

Q ss_pred             CceEEEEeCCCCC----CHHHhcccC--cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCC
Q psy6348           1 KYDGLVVRSDTKV----TAEVLQASN--LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNV   74 (333)
Q Consensus         1 ~~daliv~s~~~v----~~~~l~~~~--Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i   74 (333)
                      ++|+++.. ..++    +++.++.++  +++++..+.+.|+.|++++.++||.+++... ....+++..+.+ |+..+.+
T Consensus        67 ~adiil~v-~~p~~~~~~~~~i~~l~~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~-~~~~~~~~~l~~-l~~~a~~  143 (384)
T 1l7d_A           67 QADVVWKV-QRPMTAEEGTDEVALIKEGAVLMCHLGALTNRPVVEALTKRKITAYAMEL-MPRISRAQSMDI-LSSQSNL  143 (384)
T ss_dssp             SCSEEEEE-ECCCCGGGSCCGGGGSCTTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGG-CCCSGGGGGGCH-HHHHHHH
T ss_pred             CCCEEEEe-cCcccccCCHHHHHhhccCCEEEEEecccCCHHHHHHHHHCCCEEEEecc-ccccccccccch-hhHHHHH
Confidence            47887755 3466    788888885  8899999999999999999999999998421 111111112211 1111111


Q ss_pred             CccchhhhcCcccccC-----CCc-cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc---
Q psy6348          75 PQGCQSLKEGKWDRKL-----YTG-TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL---  144 (333)
Q Consensus        75 ~~~~~~~~~g~w~~~~-----~~g-~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~---  144 (333)
                       ..+..+..+.|....     ..+ .++.|++++|+|+|.||+.+++.++++|++|+++|++. ..+.++++|...+   
T Consensus       144 -ag~~av~~~~~~~~~~~~~~~~~~~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~  222 (384)
T 1l7d_A          144 -AGYRAVIDGAYEFARAFPMMMTAAGTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVD  222 (384)
T ss_dssp             -HHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-
T ss_pred             -HHHHHHHHHHHHhhhcccchhccCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeec
Confidence             111222222221100     111 37899999999999999999999999999999999987 4455666775433   


Q ss_pred             C---------------------------hhhhccCCCEEEEec--CCchhhHhhccHHHHhccCCCcEEEEcc--CCccc
Q psy6348         145 G---------------------------LEDIWPLADYITVHT--PLIPQTKNLINAEVLKKCKKGVRVVNVA--RGGIV  193 (333)
Q Consensus       145 ~---------------------------l~ell~~aDvV~l~~--P~t~~t~~li~~~~~~~mk~gailIN~a--Rg~~v  193 (333)
                      .                           ++++++++|+|+.++  |..+ +.++++++.++.||+|+++||++  ||+.+
T Consensus       223 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~~  301 (384)
T 1l7d_A          223 DEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGNC  301 (384)
T ss_dssp             ----------------------CCHHHHHHHHHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCSS
T ss_pred             ccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCCe
Confidence            1                           678889999999887  4332 45688899999999999999998  76543

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.70  E-value=1.2e-18  Score=171.13  Aligned_cols=208  Identities=17%  Similarity=0.160  Sum_probs=157.1

Q ss_pred             cceEEEcccCcCccChhhHh-----hCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCccccc----CCCc
Q psy6348          23 LQVVGRAGTGVDNIDLTAAT-----RKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRK----LYTG   93 (333)
Q Consensus        23 Lk~I~~~g~G~d~iD~~aa~-----~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~----~~~g   93 (333)
                      ++.|.+.|+|+|++++.++.     ++++.++|.+|+ ..+++++.+..++.+.|++....... .+.|...    ....
T Consensus        82 ~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a~  159 (404)
T 1gpj_A           82 VRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELAE  159 (404)
T ss_dssp             HHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHHH
T ss_pred             hhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHHH
Confidence            88999999999999998887     889999999887 67899999999999999987665443 3445311    0001


Q ss_pred             ---cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcCccc---cChhhhccCCCEEEEecCCch
Q psy6348          94 ---TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLNIAS---LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        94 ---~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~  164 (333)
                         .++.|++++|||+|.||+.+++.++++|+ +|+++|++...  +.++++|...   .++++++.++|+|+.|+|.  
T Consensus       160 ~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~--  237 (404)
T 1gpj_A          160 RELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA--  237 (404)
T ss_dssp             HHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS--
T ss_pred             HHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCC--
Confidence               14789999999999999999999999999 99999997633  3455667643   3577888999999999874  


Q ss_pred             hhHhhccHHHHhc--cC----CCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEE--
Q psy6348         165 QTKNLINAEVLKK--CK----KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIV--  236 (333)
Q Consensus       165 ~t~~li~~~~~~~--mk----~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~--  236 (333)
                       +..+++.+.++.  ||    ++.++||++                             +|...  ..+++++|||++  
T Consensus       238 -~~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i--~~~l~~l~~v~l~d  285 (404)
T 1gpj_A          238 -PHPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDV--EEGVENIEDVEVRT  285 (404)
T ss_dssp             -SSCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSB--CTTGGGSTTEEEEE
T ss_pred             -CCceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCC--CccccccCCeEEEe
Confidence             345677777776  42    455666654                             34321  147889999999  


Q ss_pred             ccCCCCCcHHHHH----------HHHHHHHHHHHHhHcCC
Q psy6348         237 TPHLGASTKEAQI----------RVAVEIAEQFIALANTN  266 (333)
Q Consensus       237 TPHi~~~t~ea~~----------~~~~~~~~~i~~~~~~~  266 (333)
                      +||+++.+.+++.          .+..+.++++..|.++.
T Consensus       286 ~d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~  325 (404)
T 1gpj_A          286 IDDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKL  325 (404)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998888765          45556666777766653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.67  E-value=1e-16  Score=157.74  Aligned_cols=153  Identities=20%  Similarity=0.219  Sum_probs=114.8

Q ss_pred             cccCcCccC-hhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC
Q psy6348          29 AGTGVDNID-LTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG  107 (333)
Q Consensus        29 ~g~G~d~iD-~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG  107 (333)
                      +.+|+-..- +....+..++|+|...+-+.+--+-..+.-.++..       .++       ...+.++.||+++|+|+|
T Consensus       164 TttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~-------gi~-------rat~~~L~GktV~ViG~G  229 (435)
T 3gvp_A          164 SVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILD-------GLK-------RTTDMMFGGKQVVVCGYG  229 (435)
T ss_dssp             CHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHHTHHHHHHHHHH-------HHH-------HHHCCCCTTCEEEEECCS
T ss_pred             cchhHHHHHHHHHcCCCCCCEEEecchhhhhhhhhhhhhHHHHHH-------HHH-------HhhCceecCCEEEEEeeC
Confidence            577776653 33445688999999875555443322211111110       000       013568999999999999


Q ss_pred             hHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348         108 RIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       108 ~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN  186 (333)
                      .||+.+|++|++||++|++||+.+. ...+...|++..++++++++||+|++|    +.|+++|+++.|+.||+|+++||
T Consensus       230 ~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~gailIN  305 (435)
T 3gvp_A          230 EVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSCIVCN  305 (435)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCcEEEE
Confidence            9999999999999999999998652 334566788778999999999999995    46789999999999999999999


Q ss_pred             ccCCcc-cchHhHH
Q psy6348         187 VARGGI-VDENALL  199 (333)
Q Consensus       187 ~aRg~~-vd~~aL~  199 (333)
                      ++||.+ +|.++|.
T Consensus       306 vgrg~~EId~~~L~  319 (435)
T 3gvp_A          306 MGHSNTEIDVASLR  319 (435)
T ss_dssp             CSSTTTTBTGGGGC
T ss_pred             ecCCCccCCHHHHH
Confidence            999998 7877774

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.48  E-value=7e-14  Score=132.13  Aligned_cols=114  Identities=19%  Similarity=0.224  Sum_probs=98.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH--HH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA--EV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~--~~  174 (333)
                      |+||+||+|.||..||++|...|++|++||++.+ .+...+.|...+ ++.|+++.||+|++|+|..+..+.++..  ..
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            6899999999999999999999999999999763 345566787765 8999999999999999999988888743  37


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ++.+++|.++||++...+-+...+.+.+++..+.  .+|.
T Consensus        84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lDa  121 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  121 (300)
T ss_dssp             TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEec
Confidence            7889999999999999999999999999988774  5664

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.47  E-value=1.2e-13  Score=130.24  Aligned_cols=114  Identities=17%  Similarity=0.152  Sum_probs=96.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      +||||||+|.||..+|++|...|++|++||++... +...+.|...+ ++.|++++||+|++|+|..+..+.++..+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            58999999999999999999999999999997633 44456677665 89999999999999999888888888888999


Q ss_pred             ccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       177 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      .+++|.++|+++...+-..+.+.+.+++..+.  .+|.
T Consensus        86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~--~lda  121 (297)
T 4gbj_A           86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAH--YVGA  121 (297)
T ss_dssp             HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             hcCCCeEEEECCCCChHHHHHHHHHHHhcCCc--eecC
Confidence            99999999999999999999999999988775  4553

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.46  E-value=1.3e-12  Score=124.08  Aligned_cols=148  Identities=19%  Similarity=0.221  Sum_probs=105.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCC-CHHHHHhcCcc--c-cChhh-hccCCCEEEEecCCchhhH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMV-SVEDAAKLNIA--S-LGLED-IWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~gv~--~-~~l~e-ll~~aDvV~l~~P~t~~t~  167 (333)
                      ++..++|||||+|.||+.+|+.|+..|+  +|++||+.. ..+.+.+.|+.  . .++++ ++++||+|++|+|.. .+.
T Consensus        30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~  108 (314)
T 3ggo_A           30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFR  108 (314)
T ss_dssp             CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHH
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHH
Confidence            4456899999999999999999999999  999999976 34556667762  2 37888 899999999999954 345


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCC--CCCccchhhcCCCcEEEccCCCCCcH
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP--PKSEQTFELIKHPKVIVTPHLGASTK  245 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP--~~~~~~~~L~~~pnvi~TPHi~~~t~  245 (333)
                      .++ ++....+++++++++++.......+++.+.+...-+.+.-  ++..|-  +.. ....|+....+++||+-+. +.
T Consensus       109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~hP--m~G~e~sG~~~-A~~~Lf~g~~~il~~~~~~-~~  183 (314)
T 3ggo_A          109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHP--IAGTEKSGVEY-SLDNLYEGKKVILTPTKKT-DK  183 (314)
T ss_dssp             HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEE--CCCCCCCSGGG-CCTTTTTTCEEEECCCTTS-CH
T ss_pred             HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecCc--ccCCcccchhh-hhhhhhcCCEEEEEeCCCC-CH
Confidence            555 5667789999999999887765566777766542222222  233321  111 1135778889999998543 44


Q ss_pred             HHH
Q psy6348         246 EAQ  248 (333)
Q Consensus       246 ea~  248 (333)
                      ++.
T Consensus       184 ~~~  186 (314)
T 3ggo_A          184 KRL  186 (314)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.45  E-value=1.4e-13  Score=130.72  Aligned_cols=113  Identities=16%  Similarity=0.119  Sum_probs=95.9

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH-
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA-  172 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~-  172 (333)
                      ...++|||||+|.||+.+|+.|...|++|++||+... .+...+.|+... ++++++++||+|++|+|....++.++.. 
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~  108 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ  108 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence            4567999999999999999999999999999999763 244455577654 8999999999999999977777777643 


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +.++.+++|.++||++++.+.+.+.+.+.+++..+.
T Consensus       109 ~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  144 (320)
T 4dll_A          109 GVAAAMKPGSLFLDMASITPREARDHAARLGALGIA  144 (320)
T ss_dssp             CHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence            567789999999999999999999999999887664

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.43  E-value=2.8e-12  Score=118.75  Aligned_cols=141  Identities=18%  Similarity=0.248  Sum_probs=102.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCC-HHHHHhcCcc---ccChhhhcc-CCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVS-VEDAAKLNIA---SLGLEDIWP-LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~~~gv~---~~~l~ell~-~aDvV~l~~P~t~~t~~li~  171 (333)
                      ++|||||+|.||+.+|+.|+..|+  +|++||+... .+.+.+.|+.   ..+++++++ +||+|++|+|.. .+..++.
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence            589999999999999999999998  9999999752 3445566764   236888999 999999999953 5566653


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCC-CccchhhcCCCcEEEccCCCCC
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPK-SEQTFELIKHPKVIVTPHLGAS  243 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~-~~~~~~L~~~pnvi~TPHi~~~  243 (333)
                       +..+.++++.++++++++.....+.+.+.+..+.+.+  .-++..|... .....+++..++++++||.++.
T Consensus        81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~  150 (281)
T 2g5c_A           81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD  150 (281)
T ss_dssp             -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC
T ss_pred             -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEecCCCCC
Confidence             4667799999999999988777778888887642211  1233333211 0011356777889999997764

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.42  E-value=2e-13  Score=128.80  Aligned_cols=115  Identities=11%  Similarity=0.067  Sum_probs=96.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .++..++|||||+|.||+.+|++|...|++|++||++.. .+...+.|+... ++++++++||+|++++|....++.++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            355678999999999999999999999999999999763 344455577654 899999999999999998777888875


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      .+.+..+++|.++||+++..+...+.+.+.+++..+.
T Consensus        85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            3345668899999999999999999999999876554

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.42  E-value=6.4e-13  Score=126.18  Aligned_cols=138  Identities=14%  Similarity=0.087  Sum_probs=98.4

Q ss_pred             cchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCC--------HHHHHhcCcccc-Ch
Q psy6348          77 GCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVS--------VEDAAKLNIASL-GL  146 (333)
Q Consensus        77 ~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~--------~~~a~~~gv~~~-~l  146 (333)
                      ++.+.+.+.|.+..+...  -.++|||||+|.||..+|+.|...| ++|++||+...        .+...+.|+ .. ++
T Consensus         5 ~~~~~~~~~~~~~~~~~~--M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~   81 (317)
T 4ezb_A            5 HHHSSGVDLGTENLYFQS--MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDD   81 (317)
T ss_dssp             ----------CCCHHHHT--SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESS
T ss_pred             cccccccccCcccCcccc--cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCH
Confidence            344445566776544221  1378999999999999999999999 99999998751        122344576 56 88


Q ss_pred             hhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348         147 EDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEP  219 (333)
Q Consensus       147 ~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP  219 (333)
                      ++++++||+|++|+|.......+  .+..+.++++.++||+++..+...+.+.+.+++..+....--|+.++|
T Consensus        82 ~e~~~~aDvVi~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~~  152 (317)
T 4ezb_A           82 VAGIACADVVLSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVP  152 (317)
T ss_dssp             GGGGGGCSEEEECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCST
T ss_pred             HHHHhcCCEEEEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCch
Confidence            99999999999999976665544  677788999999999999999999999999987655422222455443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.42  E-value=3.4e-13  Score=127.40  Aligned_cols=116  Identities=11%  Similarity=0.155  Sum_probs=96.8

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      ......++|||||+|.||+.+|+.|...|++|++||++.. .+...+.|+... ++++++++||+|++|+|....++.++
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence            4455668999999999999999999999999999999873 355566787664 79999999999999999777777766


Q ss_pred             --cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         171 --NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       171 --~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                        .++.++.+++|.++||+++..+...+.+.+.+++..+.
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence              24566789999999999999999999999998876554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.40  E-value=6.7e-13  Score=124.55  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=95.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      .++|||||+|.||+.+|+.|...|++|++||+... .+...+.|+... +++++++ ||+|++|+|....++.++ ++..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            36899999999999999999999999999999873 455666787765 7999999 999999999777777777 6777


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +.+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  125 (296)
T 3qha_A           93 GHAKPGTVIAIHSTISDTTAVELARDLKARDIH  125 (296)
T ss_dssp             TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCE
T ss_pred             HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCE
Confidence            889999999999999999999999999876554

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.39  E-value=9.5e-13  Score=124.58  Aligned_cols=126  Identities=10%  Similarity=0.048  Sum_probs=89.5

Q ss_pred             chhhhcCcccccC-CC-ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC---CHHHHHhcCcccc-Chhhhc
Q psy6348          78 CQSLKEGKWDRKL-YT-GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV---SVEDAAKLNIASL-GLEDIW  150 (333)
Q Consensus        78 ~~~~~~g~w~~~~-~~-g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~---~~~~a~~~gv~~~-~l~ell  150 (333)
                      ++++|++.|.+.. +. ......++|||||+|.||+.+|+.|...|+ +|++||++.   ..+...+.|+... ++++++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~   81 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA   81 (312)
T ss_dssp             -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred             CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence            4556777775432 11 223446799999999999999999999999 999999963   2344556687665 789999


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      ++||+|++|+|....... + .+..+.++++.++||+++.......++.+.+.+.
T Consensus        82 ~~aDvVi~~vp~~~~~~~-~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           82 GECDVIFSLVTAQAALEV-A-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             HHCSEEEECSCTTTHHHH-H-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEecCchhHHHH-H-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence            999999999997665543 3 6677889999999999999999999999998775

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.38  E-value=9.6e-13  Score=122.57  Aligned_cols=110  Identities=13%  Similarity=0.094  Sum_probs=94.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  174 (333)
                      ++|||||+|.||+.+|+.|...|++|++||++. ..+...+.|+... ++++++++||+|++|+|....++.++.  ++.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            689999999999999999999999999999986 3355566677665 899999999999999997777777762  556


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      .+.+++|.++||+++..+.+.+.+.+.+++..+.
T Consensus        82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            6789999999999999999999999999876554

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.37  E-value=1.2e-12  Score=126.32  Aligned_cols=114  Identities=28%  Similarity=0.297  Sum_probs=96.4

Q ss_pred             cc-ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhcc-CCCEEEEecCCchhhHhh
Q psy6348          93 GT-ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWP-LADYITVHTPLIPQTKNL  169 (333)
Q Consensus        93 g~-~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~-~aDvV~l~~P~t~~t~~l  169 (333)
                      |. ++.|||++|+|+|+||+.+|++++++|++|+++|++.. .+.+++.+.+.++.++++. +||+++.|     .+.++
T Consensus       169 G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~-----A~~~~  243 (355)
T 1c1d_A          169 GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-----AMGGV  243 (355)
T ss_dssp             TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-----SCSCC
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHh-----HHHhh
Confidence            55 79999999999999999999999999999999998753 2334557877788899988 89999853     67899


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      |+.+.++.|| ..+++|.+++.+.++++ .++|+++.+. ++=|.
T Consensus       244 I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl-v~Pd~  285 (355)
T 1c1d_A          244 ITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL-YAPDF  285 (355)
T ss_dssp             BCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE-ECCHH
T ss_pred             cCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE-EECCe
Confidence            9999999998 68999999999999777 5899998886 44443

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.36  E-value=1.7e-12  Score=125.57  Aligned_cols=119  Identities=14%  Similarity=0.221  Sum_probs=98.4

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCC---CEEEEecCCchhhHhhc
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLA---DYITVHTPLIPQTKNLI  170 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~a---DvV~l~~P~t~~t~~li  170 (333)
                      +.+++|||||+|.||+.+|+.|...|++|.+||+... .+...+.|+... +++++++.+   |+|++++|.. .++.++
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl   98 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML   98 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred             hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence            5678999999999999999999999999999999763 344455677654 799999888   9999999976 777777


Q ss_pred             cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         171 NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                       .+.+..+++|.++|+++++...+...+.+.+++..+......|+.
T Consensus        99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsG  143 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSG  143 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEEC
T ss_pred             -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCC
Confidence             567788999999999999999999999999988877644444543

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.36  E-value=1.3e-12  Score=122.90  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=93.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccc--cChhhhccCCCEEEEecCCchhhHhhcc--H
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIAS--LGLEDIWPLADYITVHTPLIPQTKNLIN--A  172 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~--~~l~ell~~aDvV~l~~P~t~~t~~li~--~  172 (333)
                      .++|||||+|.||+.+|+.|...|++|++||++.. .+...+.|...  .++++++++||+|++++|.....+.++.  +
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            46899999999999999999999999999999763 34455567655  4899999999999999997667777763  4


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +..+.+++|.++||+++..+...+.+.+.+.+..+.
T Consensus        87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            566789999999999999999999999998876553

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.34  E-value=9.4e-13  Score=122.63  Aligned_cols=110  Identities=14%  Similarity=0.133  Sum_probs=93.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  174 (333)
                      ++|||||+|.||+.+|+.|...|++|++||++.. .+...+.|+... ++++++++||+|++|+|....++.++.  ++.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            5899999999999999999999999999999873 355556677665 899999999999999997767777662  456


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ++.+++|.++||++++.+...+.+.+.+++..+.
T Consensus        82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            6789999999999999999999999988876554

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.32  E-value=7e-13  Score=127.04  Aligned_cols=139  Identities=20%  Similarity=0.176  Sum_probs=99.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC--HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS--VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .++.+++|||||+|.||+.+|+.|+..|++|++||+...  .+.+.+.|+...++++++++||+|++++|.. ....++.
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~-~~~~v~~   90 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDE-FQGRLYK   90 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHH-HHHHHHH
T ss_pred             chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcH-HHHHHHH
Confidence            468899999999999999999999999999999999764  3556667876668889999999999999954 3466665


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCc-cchhhcC---CCcEEEccCCCC
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSE-QTFELIK---HPKVIVTPHLGA  242 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~-~~~~L~~---~pnvi~TPHi~~  242 (333)
                      ++..+.|++|+++++++ |  ++.  ..+.+..    ...+||+...|.... ....++.   ..++++|||-..
T Consensus        91 ~~i~~~l~~~~ivi~~~-g--v~~--~~~~~~~----~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~  156 (338)
T 1np3_A           91 EEIEPNLKKGATLAFAH-G--FSI--HYNQVVP----RADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDA  156 (338)
T ss_dssp             HHTGGGCCTTCEEEESC-C--HHH--HTTSSCC----CTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECS
T ss_pred             HHHHhhCCCCCEEEEcC-C--chh--HHHhhcC----CCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCC
Confidence            46667899999999874 2  332  2222221    123455554552211 1124555   677899999653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.30  E-value=2.4e-11  Score=113.27  Aligned_cols=130  Identities=18%  Similarity=0.112  Sum_probs=96.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc-----------C--------------ccc-cChhhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL-----------N--------------IAS-LGLEDIWP  151 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-----------g--------------v~~-~~l~ell~  151 (333)
                      ++|+|||+|.||+.+|..+...|++|++||+.... +.+.+.           |              +.. .+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            69999999999999999999999999999997522 222221           1              122 36788899


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCC
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH  231 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~  231 (333)
                      +||+|+.++|.+.+.+..+-++..+.+++++++++.+.+  +...++.+++... -+..++..|.  |        .+..
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~~-~~~ig~h~~~--p--------~~~~  151 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGRG-DKFLALHFAN--H--------VWVN  151 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSCG-GGEEEEEECS--S--------TTTS
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCCC-cceEEEccCC--C--------cccC
Confidence            999999999988777777777888889999999966555  3456777777543 2345666653  2        2356


Q ss_pred             CcEEEccCCC
Q psy6348         232 PKVIVTPHLG  241 (333)
Q Consensus       232 pnvi~TPHi~  241 (333)
                      +.+.++||-.
T Consensus       152 ~lvevv~~~~  161 (283)
T 4e12_A          152 NTAEVMGTTK  161 (283)
T ss_dssp             CEEEEEECTT
T ss_pred             ceEEEEeCCC
Confidence            7788999843

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.28  E-value=2.5e-11  Score=112.78  Aligned_cols=143  Identities=20%  Similarity=0.190  Sum_probs=99.5

Q ss_pred             CCEEEEEecChHHHHHHHHHhhC--CCEEEEEcCCCC-HHHHHhcCcc--c-cChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAF--GMKVIGFDPMVS-VEDAAKLNIA--S-LGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~-~~~a~~~gv~--~-~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      -++|||||+|.||+.+|+.|...  |++|++||+... .+.+.+.|+.  . .+++++++++|+|++++|.. ....++ 
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~-   83 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIK-KTIDFI-   83 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHH-HHHHHH-
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHH-HHHHHH-
Confidence            36899999999999999999866  789999999752 2344456652  2 37888899999999999943 345555 


Q ss_pred             HHHHhc-cCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec-cCCC---CCCCCccchhhcCCCcEEEccCCCCCc
Q psy6348         172 AEVLKK-CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD-VFCE---EPPKSEQTFELIKHPKVIVTPHLGAST  244 (333)
Q Consensus       172 ~~~~~~-mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD-V~~~---EP~~~~~~~~L~~~pnvi~TPHi~~~t  244 (333)
                      .+..+. ++++.+++++++......+.+.+.+.+..++....- ++..   .|...  ..+++..++++++||.++..
T Consensus        84 ~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a--~~~l~~g~~~~~~~~~~~~~  159 (290)
T 3b1f_A           84 KILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAA--NVNLFENAYYIFSPSCLTKP  159 (290)
T ss_dssp             HHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSC--CTTTTTTSEEEEEECTTCCT
T ss_pred             HHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHh--hHHHhCCCeEEEecCCCCCH
Confidence            345667 899999999998877667888888775222211111 2221   22111  13577778899999987643

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.27  E-value=7.1e-12  Score=115.52  Aligned_cols=157  Identities=18%  Similarity=0.167  Sum_probs=114.0

Q ss_pred             CCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCccccc
Q psy6348          11 TKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRK   89 (333)
Q Consensus        11 ~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~   89 (333)
                      .++.+++++.++ |+-+++...|+|.++.    +.|    +..|.|+..     .+++.++.|.                
T Consensus        61 ~P~k~~i~~~~~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~-----~g~~~~l~~~----------------  111 (263)
T 2d5c_A           61 LPLKEAALAHLDWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA-----PGFLEALKAG----------------  111 (263)
T ss_dssp             TTCTTGGGGGCSEECHHHHHHTCCCEEEE----ETT----EEEEECCHH-----HHHHHHHHHT----------------
T ss_pred             ccCHHHHHHHHHHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH-----HHHHHHHHHh----------------
Confidence            477888888888 9999999999999975    344    334566654     3555555431                


Q ss_pred             CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCccccChhhhccCCCEEEEecCCch--h
Q psy6348          90 LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASLGLEDIWPLADYITVHTPLIP--Q  165 (333)
Q Consensus        90 ~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~--~  165 (333)
                         +.++.| +++|||+|.||+.+|+.|...|++|.+||++...  +.+++.+....+++++ +++|+|++++|...  .
T Consensus       112 ---~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~  186 (263)
T 2d5c_A          112 ---GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDP  186 (263)
T ss_dssp             ---TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCT
T ss_pred             ---CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCC
Confidence               346889 9999999999999999999999999999997522  2233445554578888 99999999999763  2


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                      +...+.   .+.+++|.++++++.+. .+. .|.+++++..
T Consensus       187 ~~~~l~---~~~l~~g~~viD~~~~p-~~t-~l~~~a~~~g  222 (263)
T 2d5c_A          187 SASPLP---AELFPEEGAAVDLVYRP-LWT-RFLREAKAKG  222 (263)
T ss_dssp             TCCSSC---GGGSCSSSEEEESCCSS-SSC-HHHHHHHHTT
T ss_pred             CCCCCC---HHHcCCCCEEEEeecCC-ccc-HHHHHHHHCc
Confidence            223443   46689999999999873 333 4666666533

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.26  E-value=1.8e-11  Score=122.20  Aligned_cols=145  Identities=24%  Similarity=0.238  Sum_probs=105.9

Q ss_pred             cccCcCccC-hhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC
Q psy6348          29 AGTGVDNID-LTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG  107 (333)
Q Consensus        29 ~g~G~d~iD-~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG  107 (333)
                      +.+|+.... +.+..+..|+|+|..++.+.+-.+...+.--           .+..+-|+   ..+.++.||+++|+|+|
T Consensus       209 TttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~-----------sl~dgi~r---~tg~~L~GKtVvVtGaG  274 (488)
T 3ond_A          209 TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRH-----------SLPDGLMR---ATDVMIAGKVAVVAGYG  274 (488)
T ss_dssp             SHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHH-----------HHHHHHHH---HHCCCCTTCEEEEECCS
T ss_pred             ccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccH-----------HHHHHHHH---HcCCcccCCEEEEECCC
Confidence            577887753 2334467899999977555442222111111           11111111   23457999999999999


Q ss_pred             hHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348         108 RIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       108 ~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN  186 (333)
                      .||+.+|++|+++|++|+++|+... ...+...|+...+++++++.+|+++.+.    .+.+++..+.++.||++++++|
T Consensus       275 gIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~mk~gaiVvN  350 (488)
T 3ond_A          275 DVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKMKNNAIVCN  350 (488)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTSCTTEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhcCCCeEEEE
Confidence            9999999999999999999998752 2445566777778999999999999764    4567899999999999999999


Q ss_pred             ccCCc
Q psy6348         187 VARGG  191 (333)
Q Consensus       187 ~aRg~  191 (333)
                      ++++.
T Consensus       351 aG~~~  355 (488)
T 3ond_A          351 IGHFD  355 (488)
T ss_dssp             SSSTT
T ss_pred             cCCCC
Confidence            99983

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.23  E-value=9.2e-12  Score=113.68  Aligned_cols=102  Identities=17%  Similarity=0.144  Sum_probs=67.2

Q ss_pred             cccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---------------HHH-HhcCc-cccChh
Q psy6348          85 KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---------------EDA-AKLNI-ASLGLE  147 (333)
Q Consensus        85 ~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---------------~~a-~~~gv-~~~~l~  147 (333)
                      .|....+...++.+++|||||+|.||+.+|+.|...|++|++||+....               +.. ...+. ...+++
T Consensus         6 ~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (245)
T 3dtt_A            6 IHHHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFA   85 (245)
T ss_dssp             -------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHH
T ss_pred             ccccccccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHH
Confidence            3434445678899999999999999999999999999999999996532               111 12232 334788


Q ss_pred             hhccCCCEEEEecCCchhhHhhccHHH-HhccCCCcEEEEccC
Q psy6348         148 DIWPLADYITVHTPLIPQTKNLINAEV-LKKCKKGVRVVNVAR  189 (333)
Q Consensus       148 ell~~aDvV~l~~P~t~~t~~li~~~~-~~~mk~gailIN~aR  189 (333)
                      +++++||+|++++|..... ..+. +. ...+ +|.++|+++-
T Consensus        86 e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s~  125 (245)
T 3dtt_A           86 DVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIAN  125 (245)
T ss_dssp             HHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECCC
T ss_pred             HHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECCC
Confidence            9999999999999965443 3332 22 3334 8999999993

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.23  E-value=4.2e-11  Score=112.46  Aligned_cols=138  Identities=14%  Similarity=0.094  Sum_probs=90.8

Q ss_pred             ccchhhhcCcccccCCCccccCCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCC
Q psy6348          76 QGCQSLKEGKWDRKLYTGTELYGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLAD  154 (333)
Q Consensus        76 ~~~~~~~~g~w~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aD  154 (333)
                      ++....++..|.....     ..++||||| +|.||+.+|+.|+..|++|++||+...           .+.++++++||
T Consensus         4 ~~~~~~~~~~~~~~~~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-----------~~~~~~~~~aD   67 (298)
T 2pv7_A            4 ESYANENQFGFKTINS-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-----------AVAESILANAD   67 (298)
T ss_dssp             ---------CCCCSCT-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-----------GGHHHHHTTCS
T ss_pred             hHHhhhhccCccccCC-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-----------cCHHHHhcCCC
Confidence            3444556667854221     357899999 999999999999999999999998642           14677889999


Q ss_pred             EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcE
Q psy6348         155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV  234 (333)
Q Consensus       155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnv  234 (333)
                      +|++|+|.. .+..++ ++....++++++++++++......+++.+.+.   ..     +....|...+. .+++....+
T Consensus        68 vVilavp~~-~~~~vl-~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~---~~-----~v~~hP~~g~~-~~~~~g~~~  136 (298)
T 2pv7_A           68 VVIVSVPIN-LTLETI-ERLKPYLTENMLLADLTSVKREPLAKMLEVHT---GA-----VLGLHPMFGAD-IASMAKQVV  136 (298)
T ss_dssp             EEEECSCGG-GHHHHH-HHHGGGCCTTSEEEECCSCCHHHHHHHHHHCS---SE-----EEEEEECSCTT-CSCCTTCEE
T ss_pred             EEEEeCCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCcHHHHHHHHhcC---CC-----EEeeCCCCCCC-chhhcCCeE
Confidence            999999954 467766 44566799999999998876655555555432   11     11122211110 135556689


Q ss_pred             EEccCC
Q psy6348         235 IVTPHL  240 (333)
Q Consensus       235 i~TPHi  240 (333)
                      ++|||-
T Consensus       137 ~l~~~~  142 (298)
T 2pv7_A          137 VRCDGR  142 (298)
T ss_dssp             EEEEEE
T ss_pred             EEecCC
Confidence            999974

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.21  E-value=3.1e-11  Score=117.37  Aligned_cols=98  Identities=24%  Similarity=0.335  Sum_probs=80.7

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc--------------------------Chh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL--------------------------GLE  147 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~--------------------------~l~  147 (333)
                      .+.+++++|||+|.||..+|+.++++|++|++||++.. .+.++++|.++.                          +++
T Consensus       181 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~  260 (381)
T 3p2y_A          181 TVKPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALE  260 (381)
T ss_dssp             EECCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHH
Confidence            57899999999999999999999999999999999873 355666665432                          467


Q ss_pred             hhccCCCEEEEec--CCchhhHhhccHHHHhccCCCcEEEEcc--CCccc
Q psy6348         148 DIWPLADYITVHT--PLIPQTKNLINAEVLKKCKKGVRVVNVA--RGGIV  193 (333)
Q Consensus       148 ell~~aDvV~l~~--P~t~~t~~li~~~~~~~mk~gailIN~a--Rg~~v  193 (333)
                      +++++||+|+.++  |. ..+..+++++.++.||+|++|||+|  +|+.+
T Consensus       261 e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~  309 (381)
T 3p2y_A          261 DAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNC  309 (381)
T ss_dssp             HHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSB
T ss_pred             HHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcc
Confidence            8999999999875  53 2356789999999999999999996  45443

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.21  E-value=1.7e-11  Score=117.80  Aligned_cols=138  Identities=17%  Similarity=0.158  Sum_probs=94.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhhhcc----CCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIWP----LADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell~----~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ++|||||+|.||+++|+.|+..|++|++||++. ..+.+.+.|+... +++++++    +||+|++|+|. ..+..++ +
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl-~   86 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLL-D   86 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHH-H
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHH-H
Confidence            579999999999999999999999999999976 3455667787543 6777776    47999999994 5666666 3


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc-eEEEeccCCCCC-CCCccchhhcCCCcEEEccCCC
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC-GGAALDVFCEEP-PKSEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i-~gaalDV~~~EP-~~~~~~~~L~~~pnvi~TPHi~  241 (333)
                      + +..++++++++|++..+....+++.+.+...++ .+.-  ++..|- -.......|+...++++||+-+
T Consensus        87 ~-l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~HP--maG~e~sG~~aa~~~Lf~g~~~iltp~~~  154 (341)
T 3ktd_A           87 A-VHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGSHP--MAGTANSGWSASMDGLFKRAVWVVTFDQL  154 (341)
T ss_dssp             H-HHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECEEE--CCSCC-CCGGGCCSSTTTTCEEEECCGGG
T ss_pred             H-HHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecCCc--cccccccchhhhhhHHhcCCeEEEEeCCC
Confidence            3 344599999999987665444455544431111 1111  222221 0000113578888899999754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.19  E-value=3.8e-11  Score=111.78  Aligned_cols=109  Identities=17%  Similarity=0.261  Sum_probs=89.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  174 (333)
                      ++|+|||+|.||+.+|..|...|++|.+||+... .+...+.|+... +++++++++|+|++++|....++.++.  ++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            4899999999999999999999999999999753 234445576654 788999999999999997777777763  345


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      .+.+++|.++|+++.|...+.+.|.+.+.+..+
T Consensus        86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  118 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIAPLASREISDALKAKGV  118 (299)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            677899999999999988888889998876433

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.18  E-value=4.1e-11  Score=120.10  Aligned_cols=118  Identities=17%  Similarity=0.192  Sum_probs=94.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc---Ccc---ccChhhhcc---CCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL---NIA---SLGLEDIWP---LADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---gv~---~~~l~ell~---~aDvV~l~~P~t~~t~  167 (333)
                      .++|||||+|.||+.+|++|...|++|.+||++... +...+.   +..   ..+++|+++   ++|+|++++|..+.++
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            358999999999999999999999999999998733 333333   222   247888876   5999999999877888


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      .++ .+..+.|++|.++||++++...+...+.+.+++..+.....-|+.
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            877 677788999999999999999999999999988766544434443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.18  E-value=3.8e-11  Score=111.90  Aligned_cols=109  Identities=19%  Similarity=0.291  Sum_probs=89.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  174 (333)
                      ++|||||+|.||+.+|+.|...|++|++||+... .+...+.|+... +++++++++|+|++++|....++.++.  ++.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            5899999999999999999999999999999652 233344466554 788999999999999997777777774  356


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      .+.+++|.++|++++|...+.+.|.+.+.+..+
T Consensus        85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~  117 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGI  117 (301)
T ss_dssp             HHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            677899999999999987788889888876433

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.18  E-value=4.9e-11  Score=110.26  Aligned_cols=106  Identities=13%  Similarity=0.108  Sum_probs=86.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK  177 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~  177 (333)
                      ++|+|||+|.||+.+|+.|.. |++|.+||+.... +...+.|+...+++++++++|+|++++|....++.++ ++..+.
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~   79 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPY   79 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHH-HHHHhh
Confidence            479999999999999999999 9999999997632 3334445544447788899999999999766677766 555677


Q ss_pred             cCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         178 CKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       178 mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                      +++|.++|+++.+...+.+.+.+.+.+..
T Consensus        80 l~~~~~vv~~s~~~~~~~~~l~~~~~~~g  108 (289)
T 2cvz_A           80 LREGTYWVDATSGEPEASRRLAERLREKG  108 (289)
T ss_dssp             CCTTEEEEECSCCCHHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            89999999999998888889999888643

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.17  E-value=3.8e-11  Score=111.42  Aligned_cols=107  Identities=16%  Similarity=0.269  Sum_probs=88.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH--HH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA--EV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~--~~  174 (333)
                      ++|||||+|.||+.+|+.|...|++|++|| +. ..+...+.|+... +++++++++|+|++++|....++.++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999999 65 3344555576544 7889999999999999977667777642  45


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                      .+.+++|.++|+++++...+.+.+.+.+.+..
T Consensus        83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g  114 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEMG  114 (295)
T ss_dssp             TTSCCTTEEEEECSCCCHHHHHHHHHHHHTTT
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC
Confidence            56789999999999998888889999888643

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.16  E-value=6.2e-10  Score=102.61  Aligned_cols=136  Identities=18%  Similarity=0.173  Sum_probs=95.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcc---ccChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIA---SLGLEDIWPLADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~---~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      ++|+|||+|.||+.+|+.|...|++|++||+... .+...+.|+.   ..+++++ +++|+|++++|. ..+..++ .+.
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l   77 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL   77 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence            4799999999999999999999999999998752 2344555653   2378888 999999999993 4556665 455


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCC---CCCCccchhhcCCCcEEEccCCCC
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEE---PPKSEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~E---P~~~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      ...+++++++++++.......+.+.+.+.  ++.+. .-++..+   |...  .+.++..+.++++|+-+.
T Consensus        78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~--~~~~~-~p~~g~~~~gp~~a--~~~~~~g~~~~~~~~~~~  143 (279)
T 2f1k_A           78 IPHLSPTAIVTDVASVKTAIAEPASQLWS--GFIGG-HPMAGTAAQGIDGA--EENLFVNAPYVLTPTEYT  143 (279)
T ss_dssp             GGGSCTTCEEEECCSCCHHHHHHHHHHST--TCEEE-EECCCCSCSSGGGC--CTTTTTTCEEEEEECTTC
T ss_pred             HhhCCCCCEEEECCCCcHHHHHHHHHHhC--CEeec-CcccCCccCCHHHH--hHHHhCCCcEEEecCCCC
Confidence            67789999999998877666666666554  33222 1233212   2111  124566668899997554

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.16  E-value=6.2e-11  Score=116.09  Aligned_cols=100  Identities=23%  Similarity=0.312  Sum_probs=82.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-----------------------------
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-----------------------------  144 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-----------------------------  144 (333)
                      .+.+.||+|+|+|.||..+|+.++++|++|++||++... +.++++|..++                             
T Consensus       187 ~v~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~  266 (405)
T 4dio_A          187 TVPAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQA  266 (405)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHH
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhH
Confidence            478999999999999999999999999999999998744 55566665321                             


Q ss_pred             -ChhhhccCCCEEEEec--CCchhhHhhccHHHHhccCCCcEEEEcc--CCcccch
Q psy6348         145 -GLEDIWPLADYITVHT--PLIPQTKNLINAEVLKKCKKGVRVVNVA--RGGIVDE  195 (333)
Q Consensus       145 -~l~ell~~aDvV~l~~--P~t~~t~~li~~~~~~~mk~gailIN~a--Rg~~vd~  195 (333)
                       ++++++++||+|+.++  |.. .+..+++++.++.||+|++|||+|  +|+.+..
T Consensus       267 ~~l~e~l~~aDVVI~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~  321 (405)
T 4dio_A          267 ALVAEHIAKQDIVITTALIPGR-PAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG  321 (405)
T ss_dssp             HHHHHHHHTCSEEEECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred             hHHHHHhcCCCEEEECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence             4678899999999875  532 456789999999999999999997  6665443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.16  E-value=4e-11  Score=111.44  Aligned_cols=106  Identities=19%  Similarity=0.253  Sum_probs=85.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH--HH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA--EV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~--~~  174 (333)
                      ++|||||+|.||+.+|+.|...|++|++||++.. .+...+.|+... +++++++++|+|++++|....++.++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            3799999999999999999999999999999763 344455577654 7889999999999999977777777643  24


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++.+++|.++|+++...+-+.+.+.+.+.+
T Consensus        81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             GGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            567899999999888887777777777654

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=99.16  E-value=3.4e-11  Score=119.87  Aligned_cols=105  Identities=14%  Similarity=0.126  Sum_probs=82.0

Q ss_pred             hcCcccccCCCccccCC-CEEEEEecChHHHHHHHHHhhC------CCEEEEEcCCC--CHHHHHhcCccc-----cChh
Q psy6348          82 KEGKWDRKLYTGTELYG-KTLAVLGLGRIGREVALRMQAF------GMKVIGFDPMV--SVEDAAKLNIAS-----LGLE  147 (333)
Q Consensus        82 ~~g~w~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~l~~~------G~~V~~~d~~~--~~~~a~~~gv~~-----~~l~  147 (333)
                      +.++|.+. .....|+| |||||||+|.||.++|+.|+..      |++|++.++..  +.+.+.+.|+..     .+++
T Consensus        38 ~~~~w~~~-~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~a  116 (525)
T 3fr7_A           38 RGGRNLFP-LLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIW  116 (525)
T ss_dssp             ECCGGGGG-GHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHH
T ss_pred             eccccccc-cChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHH
Confidence            34556532 12367899 9999999999999999999988      99988655432  556777888875     5899


Q ss_pred             hhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         148 DIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       148 ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      |++++||+|++++|..... .++. +.++.||+|++ |-.+.|
T Consensus       117 EAa~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaG  156 (525)
T 3fr7_A          117 ETVSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSI-LGLSHG  156 (525)
T ss_dssp             HHHHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCE-EEESSS
T ss_pred             HHHhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCe-EEEeCC
Confidence            9999999999999976553 4664 78899999998 466666

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.15  E-value=4.2e-11  Score=111.32  Aligned_cols=151  Identities=20%  Similarity=0.230  Sum_probs=107.0

Q ss_pred             ceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchh
Q psy6348           2 YDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS   80 (333)
Q Consensus         2 ~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~   80 (333)
                      ++++.|.  .+..+++++.++ +.-.++...++|.++.    +.|-    ..|.|+...     +++.++.|        
T Consensus        66 ~~G~nvt--iP~k~~i~~~ld~l~~~A~~~gavnti~~----~~g~----~~g~nTd~~-----G~~~~l~~--------  122 (275)
T 2hk9_A           66 VKGINVT--VPFKEEIIPLLDYVEDTAKEIGAVNTVKF----ENGK----AYGYNTDWI-----GFLKSLKS--------  122 (275)
T ss_dssp             CCEEEEC--TTSTTTTGGGCSEECHHHHHHTCCCEEEE----ETTE----EEEECCHHH-----HHHHHHHH--------
T ss_pred             CCEEEEC--ccCHHHHHHHHHHhhHHHHHhCCcceEEe----eCCE----EEeecCCHH-----HHHHHHHH--------
Confidence            4566664  466777888777 8878787888888764    3442    235566433     45555433        


Q ss_pred             hhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEE
Q psy6348          81 LKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL-GLEDIWPLADYIT  157 (333)
Q Consensus        81 ~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~  157 (333)
                                 .+.++.|++++|||+|.+|+.+|..|...|++|++||++...  +.+++.|+... +++++++++|+|+
T Consensus       123 -----------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi  191 (275)
T 2hk9_A          123 -----------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIV  191 (275)
T ss_dssp             -----------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEE
T ss_pred             -----------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEE
Confidence                       134578899999999999999999999999999999996522  12223455544 7888999999999


Q ss_pred             EecCCchh--hHhhccHHHHhccCCCcEEEEccC
Q psy6348         158 VHTPLIPQ--TKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       158 l~~P~t~~--t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      +++|....  +...+.   ++.+++|.++++++.
T Consensus       192 ~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          192 NTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             ECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS
T ss_pred             EeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC
Confidence            99996542  222343   456899999999987

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.15  E-value=7.8e-10  Score=110.11  Aligned_cols=152  Identities=14%  Similarity=0.118  Sum_probs=102.9

Q ss_pred             CCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCC----Cc-cccCCCEEEEEecChHHHHHHHHHhhCCCEEEE
Q psy6348          52 PGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLY----TG-TELYGKTLAVLGLGRIGREVALRMQAFGMKVIG  126 (333)
Q Consensus        52 p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~----~g-~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~  126 (333)
                      .|-|-..+.|.+.+.+|...|.         .++|.....    .. ....=++|||||+|.||..+|..+...|++|++
T Consensus        12 ~~~~~~~~~~~~~~~~~~a~~~---------~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l   82 (460)
T 3k6j_A           12 TGENLYFQGSEVRSYLMEAHSL---------AGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFL   82 (460)
T ss_dssp             TSGGGGGCBCHHHHHHHHTTCC---------TTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEE
T ss_pred             cccchhhhhHHHHHHHHhHHHh---------hccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence            4556667788888888873332         234543211    11 112237999999999999999999999999999


Q ss_pred             EcCCCCHH---------HHHhcCc-------------cc-cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcE
Q psy6348         127 FDPMVSVE---------DAAKLNI-------------AS-LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVR  183 (333)
Q Consensus       127 ~d~~~~~~---------~a~~~gv-------------~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gai  183 (333)
                      ||+.....         ...+.|.             .. .+++ .+++||+|+.++|...+.+..+-++..+.++++++
T Consensus        83 ~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aI  161 (460)
T 3k6j_A           83 VVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCI  161 (460)
T ss_dssp             ECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCE
T ss_pred             EECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCE
Confidence            99965311         1122232             12 2564 68999999999998777766665777788999999


Q ss_pred             EEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         184 VVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       184 lIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      |++.+.+  +....+.+.+.. .-+..++..|.
T Consensus       162 lasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn  191 (460)
T 3k6j_A          162 FGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN  191 (460)
T ss_dssp             EEECCSS--SCHHHHHTTSSS-GGGEEEEECCS
T ss_pred             EEecCCC--hhHHHHHHhccC-CcceEEEEecc
Confidence            9755444  344667777654 23457787777

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.15  E-value=1e-10  Score=117.14  Aligned_cols=112  Identities=15%  Similarity=0.163  Sum_probs=90.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc----Ccccc-ChhhhccC---CCEEEEecCCchhh
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL----NIASL-GLEDIWPL---ADYITVHTPLIPQT  166 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~----gv~~~-~l~ell~~---aDvV~l~~P~t~~t  166 (333)
                      +..++|||||+|.||+.+|.+|...|++|.+||++... +...+.    |+... +++++++.   +|+|++++|....+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v   92 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT   92 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHH
T ss_pred             cCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHH
Confidence            45678999999999999999999999999999997532 223322    66544 78888876   99999999987788


Q ss_pred             HhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +.++ ++..+.+++|.++||++.|...+...+.+.+.+..+.
T Consensus        93 ~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~  133 (480)
T 2zyd_A           93 DAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFN  133 (480)
T ss_dssp             HHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCC
Confidence            8888 4667889999999999999988888898888775443

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.13  E-value=3.4e-10  Score=106.55  Aligned_cols=113  Identities=17%  Similarity=0.120  Sum_probs=81.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhc-------Ccccc-ChhhhccCCCEEEEecCCchhh
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKL-------NIASL-GLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~-------gv~~~-~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      -+-|+|||||+|.||..+|..+. .|++|++||++.. .+.+.+.       +++.. ++++ +++||+|+.++|...+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v   87 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT   87 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred             cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence            35689999999999999999999 9999999999762 2333333       44443 6766 89999999999998887


Q ss_pred             HhhccHHHHhccCCCcEEE-EccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         167 KNLINAEVLKKCKKGVRVV-NVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailI-N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      +..+-.+ ++.+ ++++++ |+|.-.+   ..+.++++ ...+..++..|.
T Consensus        88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~-~~~r~~G~Hf~~  132 (293)
T 1zej_A           88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLD-SPSRFLGVHWMN  132 (293)
T ss_dssp             HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSS-CGGGEEEEEECS
T ss_pred             HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhh-cccceEeEEecC
Confidence            7766554 5666 998885 7777544   45555443 223345666666

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.12  E-value=2.1e-10  Score=115.46  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=90.4

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----cCcccc-ChhhhccC---CCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----LNIASL-GLEDIWPL---ADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~gv~~~-~l~ell~~---aDvV~l~~P~t~~t~  167 (333)
                      .++|||||+|.||+.+|..|...|++|.+||++... +...+     .|+... +++++++.   +|+|++++|....++
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            358999999999999999999999999999998733 33333     466544 78888876   999999999777888


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      .++ ++..+.+++|.++|+++.+...+...+.+.+.+..+
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~  128 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGI  128 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCC
Confidence            888 567788999999999999998888889888876544

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.11  E-value=1.4e-10  Score=109.21  Aligned_cols=109  Identities=15%  Similarity=0.142  Sum_probs=88.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH--HH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA--EV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~--~~  174 (333)
                      ++|||||+|.||+.+|+.|...|++|++||+... .+...+.|+... +++++++++|+|++++|....++.++..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            6899999999999999999999999999999763 344455676554 7888899999999999976777776643  24


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      ++.++++.++|+++++.....+.+.+.+....+
T Consensus       111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~  143 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG  143 (316)
T ss_dssp             GGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            567899999999999888788888888865433

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.11  E-value=1.5e-10  Score=105.97  Aligned_cols=102  Identities=12%  Similarity=0.065  Sum_probs=81.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      ++|||||+|.||+.+|+.|...|++|++||+....   +...+.|+. .+++++++++|+|++++|.....+.+  .+..
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~   77 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAA--RRAG   77 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHH--HHHH
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHH--HHHH
Confidence            37999999999999999999999999999884322   233445776 67888999999999999976555554  4566


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      +.+++  ++|+++.+...+.+.+.+.+...
T Consensus        78 ~~~~~--~vi~~s~~~~~~~~~l~~~~~~~  105 (264)
T 1i36_A           78 RHVRG--IYVDINNISPETVRMASSLIEKG  105 (264)
T ss_dssp             TTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred             HhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence            67776  99999988888888888888653

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.68  E-value=9.3e-12  Score=110.87  Aligned_cols=94  Identities=18%  Similarity=0.192  Sum_probs=76.1

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      +.+++|||||+|+||+.+|+.|...|++|++|||....+.....|+...+++++++++|+|++++|.. .++.++  + +
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~--~-l   92 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA--E-L   92 (201)
Confidence            67789999999999999999999999999999987643333334665557889999999999999964 567666  2 4


Q ss_pred             hccCCCcEEEEccCCccc
Q psy6348         176 KKCKKGVRVVNVARGGIV  193 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~v  193 (333)
                      ..+++++++||+++|-..
T Consensus        93 ~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           93 ADSLKGRVLIDVSNNQKM  110 (201)
Confidence            557789999999999753

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.06  E-value=2.4e-10  Score=104.81  Aligned_cols=108  Identities=12%  Similarity=0.166  Sum_probs=80.6

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCCCH-HHH-HhcCcccc-ChhhhccCCCEEEEecCCchhhHh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMVSV-EDA-AKLNIASL-GLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~~~-~~a-~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      ..++.+++|||||+|.||+.+|+.+...|++ |.+||+.... +.. +..|+... +++++++++|+|++++|.. ....
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~   83 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAE   83 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHH
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHH
Confidence            3456678999999999999999999988998 8999986522 222 33476544 7889999999999999954 4455


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++ ++..+.+++++++|+++.|-..+.  +.+.+..
T Consensus        84 v~-~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~  116 (266)
T 3d1l_A           84 LL-QGIVEGKREEALMVHTAGSIPMNV--WEGHVPH  116 (266)
T ss_dssp             HH-HHHHTTCCTTCEEEECCTTSCGGG--STTTCSS
T ss_pred             HH-HHHHhhcCCCcEEEECCCCCchHH--HHHHHHh
Confidence            55 455567889999999999876543  5555543

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.06  E-value=4.3e-10  Score=112.40  Aligned_cols=109  Identities=18%  Similarity=0.183  Sum_probs=88.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc----Ccccc-ChhhhccC---CCEEEEecCCchhhHhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL----NIASL-GLEDIWPL---ADYITVHTPLIPQTKNL  169 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~----gv~~~-~l~ell~~---aDvV~l~~P~t~~t~~l  169 (333)
                      ++|||||+|.||+.+|..|...|++|.+||+.... +...+.    |+... +++++++.   +|+|++++|....++.+
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            57999999999999999999999999999997532 223222    55543 78888776   99999999977777877


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      + ++..+.+++|.++|+++.|...+...+.+.+.+..+.
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~  123 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGIN  123 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCE
T ss_pred             H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCe
Confidence            7 4566789999999999999888888898888765444

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.05  E-value=4.2e-10  Score=112.71  Aligned_cols=109  Identities=19%  Similarity=0.232  Sum_probs=88.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----cCcccc-Chhhhc---cCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----LNIASL-GLEDIW---PLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----~gv~~~-~l~ell---~~aDvV~l~~P~t~~t~~  168 (333)
                      ++|||||+|.||+.+|..|...|++|.+||+.... +...+     .|+... ++++++   +++|+|++++|....++.
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            47999999999999999999999999999997633 33333     455443 788886   489999999997767888


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ++ .+..+.+++|.+||+++.|...+...+.+.+.+..+.
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~  121 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL  121 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             HH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            77 4566789999999999999888888888888765443

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=99.00  E-value=6e-10  Score=111.08  Aligned_cols=136  Identities=13%  Similarity=0.118  Sum_probs=94.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--CCEEEEEcCCCCH-HHHH---------------h----cCccc-cChhhhccCCCE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--GMKVIGFDPMVSV-EDAA---------------K----LNIAS-LGLEDIWPLADY  155 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a~---------------~----~gv~~-~~l~ell~~aDv  155 (333)
                      ++|+|||+|.||..+|..|...  |++|++||+.... +...               .    .++.. .++++.+++||+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999887  8999999986522 1111               0    13333 267788899999


Q ss_pred             EEEecCCchhhHh-----------hc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec---cCCCCC
Q psy6348         156 ITVHTPLIPQTKN-----------LI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD---VFCEEP  219 (333)
Q Consensus       156 V~l~~P~t~~t~~-----------li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD---V~~~EP  219 (333)
                      |++|+|......+           +.  .++..+.|++|+++|++++..+-..+.+.+.+++....  .+|   ++.+|+
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~--~~d~~V~~~Pe~  163 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKP--NLNLQVLSNPEF  163 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCT--TCEEEEEECCCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCC--CCCeEEEeCHHH
Confidence            9999985443322           11  23455678999999999998888888898888775421  233   355665


Q ss_pred             CCCc-cchhhcCCCcEEE
Q psy6348         220 PKSE-QTFELIKHPKVIV  236 (333)
Q Consensus       220 ~~~~-~~~~L~~~pnvi~  236 (333)
                      .... ..+.+...+++++
T Consensus       164 ~~~G~~~~d~~~~~rivv  181 (467)
T 2q3e_A          164 LAEGTAIKDLKNPDRVLI  181 (467)
T ss_dssp             CCTTSHHHHHHSCSCEEE
T ss_pred             hhcccchhhccCCCEEEE
Confidence            4321 1234667777764

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=99.00  E-value=6.3e-10  Score=107.73  Aligned_cols=107  Identities=16%  Similarity=0.171  Sum_probs=85.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCccccChhhhcc-CCCEEEEecCCchhhHhhcc
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASLGLEDIWP-LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~~l~ell~-~aDvV~l~~P~t~~t~~li~  171 (333)
                      +|.|||++|+|+|+||+.+|++|.++|++|+++|+....  +.+++.|.+.++.++++. +||+++.|.     +.++|+
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~  244 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN  244 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS
T ss_pred             CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC
Confidence            799999999999999999999999999999999986532  233445777778888876 899999874     567888


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      .+.++.|+ ..++++.+++...+++ ..+.|+++.+.
T Consensus       245 ~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi~  279 (364)
T 1leh_A          245 DFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGIV  279 (364)
T ss_dssp             TTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTCE
T ss_pred             HHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCCE
Confidence            88888884 5788999999887755 55677776663

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.99  E-value=8e-10  Score=102.65  Aligned_cols=92  Identities=14%  Similarity=0.243  Sum_probs=74.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      ++|+|||+ |.||+.+|+.|...|++|++||+... .+...+.|+...++.+++++||+|++++|.. .+..++ ++..+
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~-~~~~v~-~~l~~   89 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDN-IIEKVA-EDIVP   89 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHH-HHHHHH-HHHGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCch-HHHHHH-HHHHH
Confidence            58999999 99999999999999999999999652 2334446765567888999999999999954 355555 45566


Q ss_pred             ccCCCcEEEEccCCcc
Q psy6348         177 KCKKGVRVVNVARGGI  192 (333)
Q Consensus       177 ~mk~gailIN~aRg~~  192 (333)
                      .+++++++|+++.|..
T Consensus        90 ~l~~~~ivv~~s~~~~  105 (286)
T 3c24_A           90 RVRPGTIVLILDAAAP  105 (286)
T ss_dssp             GSCTTCEEEESCSHHH
T ss_pred             hCCCCCEEEECCCCch
Confidence            7899999999888863

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.99  E-value=6.5e-10  Score=111.23  Aligned_cols=109  Identities=20%  Similarity=0.232  Sum_probs=87.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-hcC-------ccc-cChhhhcc---CCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-KLN-------IAS-LGLEDIWP---LADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~g-------v~~-~~l~ell~---~aDvV~l~~P~t~~  165 (333)
                      ++|||||+|.||+.+|..|...|++|.+||+.... +... +.|       +.. .+++++++   ++|+|++++|....
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            37999999999999999999999999999996532 2222 235       433 37888876   59999999997777


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ++.++ ++..+.+++|.++|+++.|...+.+.+.+.+.+..+.
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~  123 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR  123 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCe
Confidence            78777 4666789999999999999888888888888875544

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.95  E-value=2.8e-09  Score=95.01  Aligned_cols=80  Identities=18%  Similarity=0.302  Sum_probs=64.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      .++.+++|+|||+|.||+.+|..|...|++|++||+...                .+++||+|++++| ...++.++. +
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------~~~~aD~vi~av~-~~~~~~v~~-~   76 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------ATTLGEIVIMAVP-YPALAALAK-Q   76 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------CSSCCSEEEECSC-HHHHHHHHH-H
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------HhccCCEEEEcCC-cHHHHHHHH-H
Confidence            468899999999999999999999999999999998643                5678999999999 667777664 4


Q ss_pred             HHhccCCCcEEEEccCCcc
Q psy6348         174 VLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~  192 (333)
                      ..+.++ ++++|++++|--
T Consensus        77 l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           77 YATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             THHHHT-TSEEEECCCCBC
T ss_pred             HHHhcC-CCEEEEECCCCC
Confidence            445677 999999999754

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.92  E-value=1.1e-09  Score=97.95  Aligned_cols=94  Identities=18%  Similarity=0.116  Sum_probs=72.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      .+++|+|||+|.||+.+|+.|...|++|++||++... +...+.|+...+++++++++|+|++++|. .....++.   +
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~-~~~~~v~~---l  102 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFR-EHYSSLCS---L  102 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCG-GGSGGGGG---G
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCCh-HHHHHHHH---H
Confidence            4578999999999999999999999999999986422 22333366555788999999999999994 45556653   3


Q ss_pred             hccCCCcEEEEccCCcccc
Q psy6348         176 KKCKKGVRVVNVARGGIVD  194 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd  194 (333)
                      +.+.+++++|++++|...+
T Consensus       103 ~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A          103 SDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             HHHHTTCEEEECCCCCHHH
T ss_pred             HHhcCCCEEEEeCCCcccc
Confidence            3333899999999997654

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.91  E-value=2.3e-08  Score=93.57  Aligned_cols=115  Identities=17%  Similarity=0.133  Sum_probs=79.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-----------hcC------------------ccc-cChh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-----------KLN------------------IAS-LGLE  147 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g------------------v~~-~~l~  147 (333)
                      ++|+|||+|.||..+|..+...|++|++||+.... +.+.           +.|                  +.. .+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            68999999999999999999999999999996522 2110           122                  222 2677


Q ss_pred             hhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         148 DIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       148 ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      +.+++||+|++++|...+.+.-+-++..+.++++++++..+.+-  ....+.+.+.... +-.+.+.+.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~-~~~g~h~~~  161 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQD-RFAGLHFFN  161 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGG-GEEEEEECS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCcc-cEEEEecCC
Confidence            78999999999999766554444455666788999998655553  3346666664321 224555554

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.90  E-value=9.9e-09  Score=101.42  Aligned_cols=114  Identities=15%  Similarity=0.173  Sum_probs=82.9

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh------------------cCcccc-Chhhhcc
Q psy6348          92 TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK------------------LNIASL-GLEDIWP  151 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~------------------~gv~~~-~l~ell~  151 (333)
                      .+++..-++|+|||+|.||..+|..|.. |++|++||+.... +...+                  .++... ++++.++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~  108 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYR  108 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHT
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHh
Confidence            4567777899999999999999999988 9999999986532 22211                  123333 6788999


Q ss_pred             CCCEEEEecCCchh-------hHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         152 LADYITVHTPLIPQ-------TKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       152 ~aDvV~l~~P~t~~-------t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      +||+|++++|....       +..+.  -+...+ +++|+++|+.|+-.+-..+.+.+.+.+..+
T Consensus       109 ~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v  172 (432)
T 3pid_A          109 NADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV  172 (432)
T ss_dssp             TCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred             CCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence            99999999996521       11222  245566 999999999999999889999998877544

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.85  E-value=2.8e-08  Score=95.84  Aligned_cols=181  Identities=16%  Similarity=0.087  Sum_probs=112.1

Q ss_pred             ceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEEC---CCCC-----chHHHHHH--HHHHHHH
Q psy6348           2 YDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNA---PGGN-----FISACELT--CSLISAL   70 (333)
Q Consensus         2 ~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~---p~~n-----~~avAE~~--l~l~l~~   70 (333)
                      +|.| +....+...+.....+ +..+......++.-.++++.++||..+|.   |.-.     -.+++|.+  ++.++++
T Consensus        67 ad~i-~~vksP~~~~~~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA  145 (361)
T 1pjc_A           67 REMV-VKVKEPLPAEYDLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGA  145 (361)
T ss_dssp             SSEE-ECSSCCCGGGGGGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHH
T ss_pred             CCeE-EEECCCCHHHHHhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHH
Confidence            5664 4444455444332223 55555555555554567788899998875   4311     12333333  3555554


Q ss_pred             hcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccc------
Q psy6348          71 SRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIAS------  143 (333)
Q Consensus        71 ~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~------  143 (333)
                      .. +......  .|-+-. ..  ..+.++++.|+|.|.+|+.+++.++.+|++|+++|++... +.+++.+...      
T Consensus       146 ~n-t~~~~~g--~G~~l~-~l--~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~  219 (361)
T 1pjc_A          146 RF-LERQQGG--RGVLLG-GV--PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYS  219 (361)
T ss_dssp             HH-TSGGGTS--CCCCTT-CB--TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEEC
T ss_pred             HH-HhhccCC--Cceecc-CC--CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeC
Confidence            33 2221110  011101 00  2477899999999999999999999999999999997532 3333333221      


Q ss_pred             --cChhhhccCCCEEEEecCCch-hhHhhccHHHHhccCCCcEEEEccC
Q psy6348         144 --LGLEDIWPLADYITVHTPLIP-QTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       144 --~~l~ell~~aDvV~l~~P~t~-~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                        .++.+.++++|+|+.+++... .+..++.++.++.|++|.+++|++-
T Consensus       220 ~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~  268 (361)
T 1pjc_A          220 NSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAV  268 (361)
T ss_dssp             CHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             CHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEec
Confidence              145567789999999987532 2334567888899999999999974

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.84  E-value=1.3e-08  Score=94.63  Aligned_cols=103  Identities=14%  Similarity=0.124  Sum_probs=79.5

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC---EEEEEcCCCCH-HHHHh-cCcccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM---KVIGFDPMVSV-EDAAK-LNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d~~~~~-~~a~~-~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .++|||||+|+||+.+|+.+...|+   +|++||++... +...+ +|+... +..+++++||+|++++|. .....++ 
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl-   80 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC-   80 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence            4689999999999999999999998   89999997732 33333 487665 788999999999999983 4445554 


Q ss_pred             HHHHhc-cCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         172 AEVLKK-CKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       172 ~~~~~~-mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++.... ++++.++|+++-|-  ..+.|.+.+..
T Consensus        81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           81 EELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            344455 78888999887664  45677777765

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.82  E-value=5.6e-09  Score=98.93  Aligned_cols=104  Identities=15%  Similarity=0.182  Sum_probs=80.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCC---HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVS---VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~---~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      ..++|||||+|.||..+|..|...|    .+|++||+...   .+...+.|+... +..+++++||+|++++| ......
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~   99 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPF   99 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHH
Confidence            3468999999999999999999989    79999999764   334456687665 68888999999999999 456666


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++ .+....++++.++|+++.|--  .+.+.+.+.+
T Consensus       100 vl-~~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~  132 (322)
T 2izz_A          100 IL-DEIGADIEDRHIVVSCAAGVT--ISSIEKKLSA  132 (322)
T ss_dssp             HH-HHHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred             HH-HHHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence            65 345567889999999977643  3456666654

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.82  E-value=4.5e-09  Score=87.73  Aligned_cols=88  Identities=15%  Similarity=0.154  Sum_probs=69.2

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCccc---cChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIAS---LGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      |++++|||.|.||+.+++.|+..|++|.+||+....  +.+++++...   .+++++++++|+|+.++|..   ..++..
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~   97 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE   97 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence            899999999999999999999999999999997532  2344556542   36888999999999999965   234443


Q ss_pred             HHHhccCCCcEEEEccCCc
Q psy6348         173 EVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~  191 (333)
                         +.+++|.++++++...
T Consensus        98 ---~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           98 ---RSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             ---GGCCTTCEEEECCSSC
T ss_pred             ---HHcCCCCEEEEccCCc
Confidence               4578899999987653

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.81  E-value=4.2e-09  Score=95.83  Aligned_cols=102  Identities=17%  Similarity=0.226  Sum_probs=76.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC----EEEEEcCCCCH-HHH-HhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM----KVIGFDPMVSV-EDA-AKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~----~V~~~d~~~~~-~~a-~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      ++|||||+|+||+.+|+.|...|+    +|++||++... +.. ++.|+... +.+++++++|+|++++|. .....++ 
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~-~~~~~v~-   80 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKP-DLYASII-   80 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCT-TTHHHHC-
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCH-HHHHHHH-
Confidence            589999999999999999999998    99999997532 233 34577654 788999999999999973 4445555 


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++....++++.++|++..|-  ..+.+.+.+..
T Consensus        81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~  111 (247)
T 3gt0_A           81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK  111 (247)
T ss_dssp             ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred             HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence            45556788999999776653  34566666654

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.79  E-value=1.2e-08  Score=92.94  Aligned_cols=99  Identities=18%  Similarity=0.192  Sum_probs=73.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH-HHHH-hcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV-EDAA-KLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~-~~a~-~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      ++|||||+|.||+.+|..|...| ++|.+||++... +... ..|+... ++++++ ++|+|++++| ......++.  .
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~--~   76 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACK--N   76 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHT--T
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHH--H
Confidence            47999999999999999999889 999999997522 2233 3477654 677888 9999999999 555555543  1


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      +.. + +.++|+++.|--.  +.+.+.+..+
T Consensus        77 l~~-~-~~ivv~~~~g~~~--~~l~~~~~~~  103 (263)
T 1yqg_A           77 IRT-N-GALVLSVAAGLSV--GTLSRYLGGT  103 (263)
T ss_dssp             CCC-T-TCEEEECCTTCCH--HHHHHHTTSC
T ss_pred             hcc-C-CCEEEEecCCCCH--HHHHHHcCCC
Confidence            122 4 8999999655433  6777777664

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.78  E-value=3.2e-08  Score=98.23  Aligned_cols=105  Identities=14%  Similarity=0.092  Sum_probs=80.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc-------------------C-ccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL-------------------N-IAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-------------------g-v~~-~~l~ell~~aDvV  156 (333)
                      -+++|||+|.||..+|..|...|++|++||+.... +...+.                   | +.. .++.+.+++||+|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv   88 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV   88 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence            48999999999999999999999999999997743 222221                   1 233 2678899999999


Q ss_pred             EEecCCch----------hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         157 TVHTPLIP----------QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       157 ~l~~P~t~----------~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++|+|...          ..+..+ +...+.+++|.++|+.|.-.+-..+.+.+.+.+
T Consensus        89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            99988443          133333 566788999999999998777777777777765

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.78  E-value=1.5e-08  Score=92.34  Aligned_cols=99  Identities=12%  Similarity=0.163  Sum_probs=74.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-HhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-AKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      ++|||||+|.||+.+++.|...|.+|.+||++... +.. ++.|+... +++++++++|+|++++| ......     .+
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~-----v~   77 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFET-----VL   77 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHH-----HH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHH-----HH
Confidence            58999999999999999999999999999997532 222 23476654 78899999999999999 444433     34


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      ..+++|.++|++..|--  .+.+.+.+..+
T Consensus        78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           78 KPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence            45678999999976643  34566666654

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.76  E-value=4.1e-08  Score=98.34  Aligned_cols=117  Identities=21%  Similarity=0.251  Sum_probs=83.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------cCc-------------ccc-Chhhhcc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------LNI-------------ASL-GLEDIWP  151 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~gv-------------~~~-~l~ell~  151 (333)
                      -++|||||+|.||..+|..+...|++|++||+.... +.+.+           .|.             ... +++ .++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence            368999999999999999999999999999997522 22211           221             122 454 688


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEE-EccCCcccchHhHHhhhhcCCceEEEeccCCCCC
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV-NVARGGIVDENALLDSLKCGHCGGAALDVFCEEP  219 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI-N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP  219 (333)
                      +||+|+.++|...+.+.-+-++..+.++++++|+ |+|.-.+   ..+.+.+.. .-+..++..|.+-|
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~~-p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIKN-PERVAGLHFFNPAP  148 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSSS-GGGEEEEEECSSTT
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHccC-ccceEEeeecChhh
Confidence            9999999999877766555566777899999995 6665433   466666643 23446777776443

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.75  E-value=2e-08  Score=99.08  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=79.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-------------------cC-cccc-ChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-------------------LN-IASL-GLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------~g-v~~~-~l~ell~~aDvV  156 (333)
                      ++|+|||+|.||..+|..|...|++|++||+.... +...+                   .| +... ++++.+++||+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            37999999999999999999999999999986522 22222                   22 3222 677888999999


Q ss_pred             EEecCCchh---------hHhhccHHHHhccCC---CcEEEEccCCcccc-hHhHHhhhhc
Q psy6348         157 TVHTPLIPQ---------TKNLINAEVLKKCKK---GVRVVNVARGGIVD-ENALLDSLKC  204 (333)
Q Consensus       157 ~l~~P~t~~---------t~~li~~~~~~~mk~---gailIN~aRg~~vd-~~aL~~aL~~  204 (333)
                      ++|+|....         .+..+ ++..+.+++   +.++|+.+...+-. .+.+.+.+++
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            999995443         44443 455567888   99999998877766 6777777765

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.73  E-value=3.5e-08  Score=97.99  Aligned_cols=105  Identities=15%  Similarity=0.148  Sum_probs=79.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-------------------cC-ccc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-------------------LN-IAS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------------------~g-v~~-~~l~ell~~aDvV  156 (333)
                      ++|+|||+|.||..+|..|...|++|++||+.... +...+                   .+ +.. .++++++++||+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            58999999999999999999999999999996532 22222                   11 222 2678889999999


Q ss_pred             EEecCCch---------hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         157 TVHTPLIP---------QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       157 ~l~~P~t~---------~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++|+|...         ..+..+ +...+.+++|.++|+.+.-.+-..+.+.+.+++
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            99999543         344443 556677999999999998666666777777655

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=98.71  E-value=5.5e-08  Score=90.24  Aligned_cols=107  Identities=18%  Similarity=0.205  Sum_probs=76.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccc-------------cChhhhcc---CCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIAS-------------LGLEDIWP---LADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~-------------~~l~ell~---~aDvV~l~~P  161 (333)
                      ++|+|||+|.||+.+|..|...|++|++||+... .+...+.|...             .+.+++.+   ++|+|++++|
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            5899999999999999999999999999998652 23333445322             13345544   8999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      . ..+..++ ++..+.+++++++|+++.| +-..+.+.+.+...++.
T Consensus        84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g-~~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           84 A-QQLDAMF-KAIQPMITEKTYVLCLLNG-LGHEDVLEKYVPKENIL  127 (316)
T ss_dssp             H-HHHHHHH-HHHGGGCCTTCEEEECCSS-SCTHHHHTTTSCGGGEE
T ss_pred             c-ccHHHHH-HHHHHhcCCCCEEEEecCC-CCcHHHHHHHcCCccEE
Confidence            4 4555555 4455678899999999765 33346677777655444

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.70  E-value=2.6e-08  Score=94.12  Aligned_cols=109  Identities=17%  Similarity=0.116  Sum_probs=78.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCH--HHHHhcC--cccc-ChhhhccCCCEEEEecCCchhhHhh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSV--EDAAKLN--IASL-GLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~--~~a~~~g--v~~~-~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      .++++||||+|.||+.+++.+.. +|+ +|.+||++...  +.+++.+  +... +++++++++|+|++++|.   ...+
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v  210 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI  210 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence            46799999999999999998875 487 99999997532  2233345  5443 789999999999999994   3455


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +..   +.+++|.++++++....- ...+.+.+.....  ..+|-
T Consensus       211 ~~~---~~l~~g~~vi~~g~~~p~-~~el~~~~~~~g~--~~vD~  249 (312)
T 2i99_A          211 LFG---EWVKPGAHINAVGASRPD-WRELDDELMKEAV--LYVDS  249 (312)
T ss_dssp             BCG---GGSCTTCEEEECCCCSTT-CCSBCHHHHHHSE--EEESC
T ss_pred             cCH---HHcCCCcEEEeCCCCCCC-ceeccHHHHhcCE--EEECC
Confidence            544   568999999999877663 3555544443322  45663

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.66  E-value=3.6e-08  Score=86.94  Aligned_cols=114  Identities=18%  Similarity=0.228  Sum_probs=80.6

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-HhcC-------ccccChhhhccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-AKLN-------IASLGLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~g-------v~~~~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      ++++|+| .|.||+.+++.|...|++|.+||+.... +.. +..+       +...+++++++++|+|++++| ...++.
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~-~~~~~~   79 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIP-WEHAID   79 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSC-HHHHHH
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCC-hhhHHH
Confidence            3799999 9999999999999999999999986522 222 1122       333467788899999999999 344555


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccc------------hHhHHhhhhcCCceEEEeccCCCCC
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVD------------ENALLDSLKCGHCGGAALDVFCEEP  219 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd------------~~aL~~aL~~g~i~gaalDV~~~EP  219 (333)
                      ++. +..+.++ +.++|+++.|--.+            .+.+.+.+..    ...++.+.+.|
T Consensus        80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~  136 (212)
T 1jay_A           80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIP  136 (212)
T ss_dssp             HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCC
T ss_pred             HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchH
Confidence            543 3334464 89999999865432            4667766653    23567777766

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.66  E-value=9.8e-08  Score=90.52  Aligned_cols=103  Identities=22%  Similarity=0.233  Sum_probs=73.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhc-Cc--------------cc-cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKL-NI--------------AS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~-gv--------------~~-~~l~ell~~aDvV~l~~P  161 (333)
                      ++|+|||+|.||+.+|..|...|++|.+||+... .+...+. ++              .. .+++++++++|+|++++|
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999999999999999998652 2333332 22              12 267788899999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ... +..++ ++..+.+++++++|++ .|.......+.+.+..
T Consensus        85 ~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           85 AIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             GGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             chH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            544 45554 5566778999999999 4412233334555543

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.65  E-value=3.2e-07  Score=91.32  Aligned_cols=115  Identities=18%  Similarity=0.216  Sum_probs=78.9

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------cC-----------ccc-cChhhhccCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------LN-----------IAS-LGLEDIWPLA  153 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-----------v~~-~~l~ell~~a  153 (333)
                      -++|+|||+|.||..+|..+...|++|++||+.... +.+.+           .|           ... .++ +.+++|
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999986521 22111           11           011 245 568899


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      |+|+.++|...+.+.-+-++..+.++++++|++.+. ++ ....|.+.+... -.-.+++.|.
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs-~~-~~~~la~~~~~~-~~~ig~hf~~  175 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS-AL-NVDDIASSTDRP-QLVIGTHFFS  175 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS-SS-CHHHHHTTSSCG-GGEEEEEECS
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCC-Cc-CHHHHHHHhcCC-cceEEeecCC
Confidence            999999997655555444566677899999997433 33 334777776532 2235666673

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=98.63  E-value=1.1e-07  Score=86.55  Aligned_cols=70  Identities=11%  Similarity=0.127  Sum_probs=58.2

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK  177 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~  177 (333)
                      .++|||||+|+||.++|+.|+..|++|.+||+.                ++ +++||  ++++|.. ....++ .+....
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~----------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~   64 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP----------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAF   64 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG----------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTT
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH----------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHh
Confidence            468999999999999999999999999999982                22 56799  9999965 556665 556667


Q ss_pred             cCCCcEEEEcc
Q psy6348         178 CKKGVRVVNVA  188 (333)
Q Consensus       178 mk~gailIN~a  188 (333)
                      +++|+++++++
T Consensus        65 l~~g~ivvd~s   75 (232)
T 3dfu_A           65 ARRGQMFLHTS   75 (232)
T ss_dssp             CCTTCEEEECC
T ss_pred             cCCCCEEEEEC
Confidence            89999999985

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.63  E-value=6.4e-08  Score=93.30  Aligned_cols=96  Identities=18%  Similarity=0.191  Sum_probs=73.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcC--------------ccc-cChhhhccCCCEEEEec
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLN--------------IAS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g--------------v~~-~~l~ell~~aDvV~l~~  160 (333)
                      ..++|+|||.|.||..+|..|...|++|.+||+... .+...+.+              +.. .++++.+++||+|++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            346899999999999999999999999999999642 22333322              122 26788899999999999


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccCCcccc
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVD  194 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd  194 (333)
                      |. ...+.++ ++....+++++++|+++.|=..+
T Consensus       108 p~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~  139 (356)
T 3k96_A          108 PS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKG  139 (356)
T ss_dssp             CH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTT
T ss_pred             CH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcC
Confidence            94 4555555 55667789999999998875544

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.62  E-value=1.7e-07  Score=98.12  Aligned_cols=115  Identities=19%  Similarity=0.150  Sum_probs=80.9

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcC-------------cccc-Chhhhcc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLN-------------IASL-GLEDIWP  151 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~g-------------v~~~-~l~ell~  151 (333)
                      =++|||||+|.||..+|..+...|++|++||+.... +.+           .+.|             ++.. ++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            368999999999999999999999999999996522 211           1123             1122 45 6789


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      +||+|+.++|...+.+.-+-.+..+.++++++|+..+.+-  ....+.+.+... -...+++.|.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~~-~~~ig~hf~~  454 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKRP-ENFVGMHFFN  454 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSCG-GGEEEEECCS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhcCc-cceEEEEccC
Confidence            9999999999877766655566777899999998554442  334566666432 2235677666

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.61  E-value=8.5e-08  Score=90.18  Aligned_cols=103  Identities=13%  Similarity=0.118  Sum_probs=74.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcC--CCC-HHHHHhcCc-----------ccc---ChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDP--MVS-VEDAAKLNI-----------ASL---GLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~--~~~-~~~a~~~gv-----------~~~---~l~ell~~aDvV~l~~P  161 (333)
                      ++|+|||+|.||+.+|..|...|++|++||+  ... .+...+.|.           ...   ++.+.++++|+|++++|
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            3799999999999999999999999999998  542 233334342           222   56677899999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCc---c-cchHhHHhhhhc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGG---I-VDENALLDSLKC  204 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~---~-vd~~aL~~aL~~  204 (333)
                      .. .+..++ .+... ++++.++|+++.|-   - -..+.+.+.+.+
T Consensus        81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           81 TD-GVLPVM-SRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             GG-GHHHHH-HHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             hH-HHHHHH-HHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            54 555555 34556 88999999998774   1 133455565554

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.60  E-value=1.3e-07  Score=92.46  Aligned_cols=106  Identities=15%  Similarity=0.139  Sum_probs=79.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCc------------------ccc-ChhhhccCCCEEEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNI------------------ASL-GLEDIWPLADYITV  158 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv------------------~~~-~l~ell~~aDvV~l  158 (333)
                      ++|+|||+|.||..+|..|.. |++|++||+.... +...+.+.                  ... ++.+.+++||+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999999 9999999986522 22222232                  122 45677889999999


Q ss_pred             ecCCch----------hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         159 HTPLIP----------QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       159 ~~P~t~----------~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      ++|...          .....+ +...+ ++++.++|+.+.-++-..+.+.+.+....+
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v  136 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRI  136 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred             ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeE
Confidence            999653          244444 44556 899999999888888778888888766533

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=98.60  E-value=1.1e-07  Score=93.42  Aligned_cols=95  Identities=22%  Similarity=0.253  Sum_probs=78.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcC-------CCCHHHHHhcCccccChhhhccCCCEEEEecCCchhh
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP-------MVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~-------~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      .-|+||||+|||||.-|.+-|..|+..|.+|++--+       +.+.+.+.+.|++..+..|+.++||+|++.+|+..+ 
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~q-  111 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQH-  111 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGGH-
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhhH-
Confidence            348999999999999999999999999999987533       124467788899988999999999999999996433 


Q ss_pred             HhhccHHHHhccCCCcEEEEccCCc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      ..+. ++..+.||+|+.|. .|.|=
T Consensus       112 ~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          112 SDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             HHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             HHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            3344 56999999999887 56664

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.59  E-value=1.3e-07  Score=94.68  Aligned_cols=106  Identities=9%  Similarity=0.030  Sum_probs=75.7

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc-------C-------------cccc-ChhhhccCCCE
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL-------N-------------IASL-GLEDIWPLADY  155 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-------g-------------v~~~-~l~ell~~aDv  155 (333)
                      ..+|+|||+|.||..+|..|...|++|++||+.... +...+.       |             +... ++++.+++||+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            369999999999999999999999999999986422 222221       1             1121 56678889999


Q ss_pred             EEEecCCc---------hhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         156 ITVHTPLI---------PQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       156 V~l~~P~t---------~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      |++|+|..         ...+..+ +...+.+++++++|+.+.-.+-..+.+.+.+.+
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~  144 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAE  144 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHH
Confidence            99999952         3444444 456677999999999985445445555555543

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.59  E-value=5.6e-08  Score=88.49  Aligned_cols=98  Identities=13%  Similarity=0.228  Sum_probs=71.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .++|||||+|.||+.+|..|...|    .+|.+||+....     .|+... +.+++++++|+|++++| ....+.++. 
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~-   76 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN-   76 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH-
Confidence            358999999999999999999888    689999997643     566654 68888999999999999 455555553 


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      +..+.++ +..+|....|  ++.+.+.+.+..+
T Consensus        77 ~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           77 NIKPYLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             HSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             HHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            4445564 5555555444  2334666666554

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.59  E-value=1.4e-07  Score=93.23  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=75.7

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc---cChhhh---------------ccCCCEEE
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS---LGLEDI---------------WPLADYIT  157 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~---~~l~el---------------l~~aDvV~  157 (333)
                      -+|.++.|||+|.||..+|..|...|++|++||+....-.....|...   ..++|+               +++||+|+
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi   88 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI   88 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence            468999999999999999999999999999999965332222222111   012221               46899999


Q ss_pred             EecCCchh--------hHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhhh
Q psy6348         158 VHTPLIPQ--------TKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDSL  202 (333)
Q Consensus       158 l~~P~t~~--------t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL  202 (333)
                      +|+|....        ...+.  .+...+.|++|.++|+.|.-.+-..+.+.+.+
T Consensus        89 i~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           89 IAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             ECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             EEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence            99995432        11233  25567789999999999998888888887764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.58  E-value=2.1e-07  Score=93.08  Aligned_cols=103  Identities=20%  Similarity=0.133  Sum_probs=77.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CC-EEEEEcCCCC----HHHHHhc----------------------C-ccccChhhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GM-KVIGFDPMVS----VEDAAKL----------------------N-IASLGLEDI  149 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~-~V~~~d~~~~----~~~a~~~----------------------g-v~~~~l~el  149 (333)
                      ++|+|||+|.||..+|..|... |+ +|++||+...    .-.....                      | +...+-.+.
T Consensus        19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~ea   98 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSR   98 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHHH
Confidence            6899999999999999999999 99 9999998766    3221111                      1 222233678


Q ss_pred             ccCCCEEEEecCCch--------hhHhhc--cHHHHhccCCCcEEEEccCCcccchHhHHhh
Q psy6348         150 WPLADYITVHTPLIP--------QTKNLI--NAEVLKKCKKGVRVVNVARGGIVDENALLDS  201 (333)
Q Consensus       150 l~~aDvV~l~~P~t~--------~t~~li--~~~~~~~mk~gailIN~aRg~~vd~~aL~~a  201 (333)
                      +++||+|++|+|...        +...+.  .+...+.+++|.++|+.|.-.+-..+.+.+.
T Consensus        99 ~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~  160 (478)
T 3g79_A           99 ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQ  160 (478)
T ss_dssp             GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHH
T ss_pred             HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHH
Confidence            899999999999542        233333  2556788999999999999888888888763

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.56  E-value=1.1e-07  Score=84.98  Aligned_cols=90  Identities=18%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEE-EcCCCCH-H-HHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIG-FDPMVSV-E-DAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~-~-~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      -++|+|||+|.||+.+|+.|...|++|.+ ||+.... + ..++.|+... +..+.++++|+|++++|. .....++.. 
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~-  100 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVTQ-  100 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH-
Confidence            46899999999999999999999999999 9987632 2 2344565443 556678999999999993 333433321 


Q ss_pred             HHhccCCCcEEEEccCCc
Q psy6348         174 VLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~  191 (333)
                       +.. .++.++|+++-|-
T Consensus       101 -l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A          101 -VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             -CSC-CTTCEEEECCCCB
T ss_pred             -hhc-cCCCEEEEcCCCC
Confidence             222 3588999998653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=98.55  E-value=1.5e-07  Score=89.28  Aligned_cols=86  Identities=21%  Similarity=0.284  Sum_probs=65.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcC-----------cccc-ChhhhccCCCEEEEecCCch
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLN-----------IASL-GLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g-----------v~~~-~l~ell~~aDvV~l~~P~t~  164 (333)
                      ..+|+|||+|.||..+|.+|...|++|.+||+... .+...+.|           +... ++++ ++.+|+|++++| +.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~   91 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ   91 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence            45899999999999999999999999999999642 23333334           2332 6777 889999999999 45


Q ss_pred             hhHhhccHHHHhccC-CCcEEEEccCC
Q psy6348         165 QTKNLINAEVLKKCK-KGVRVVNVARG  190 (333)
Q Consensus       165 ~t~~li~~~~~~~mk-~gailIN~aRg  190 (333)
                      .++.++.     .++ ++.++|+++.|
T Consensus        92 ~~~~v~~-----~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           92 YIREHLL-----RLPVKPSMVLNLSKG  113 (335)
T ss_dssp             GHHHHHT-----TCSSCCSEEEECCCC
T ss_pred             HHHHHHH-----HhCcCCCEEEEEeCC
Confidence            5555542     233 78999999876

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.55  E-value=2.4e-07  Score=77.53  Aligned_cols=102  Identities=11%  Similarity=0.107  Sum_probs=78.2

Q ss_pred             cCCCEEEEEec----ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          96 LYGKTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        96 l~gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      +.-++|+|||+    |++|..+++.|...|++|+.+||....    -.|+... +++|+....|++++++| .+....++
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~   86 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA   86 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH
Confidence            45679999999    999999999999999999999986421    1477655 79999999999999999 56667776


Q ss_pred             cHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         171 NAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      . +..+ ...++++++.+.    ..+++.++.++..+.
T Consensus        87 ~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           87 K-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGVE  118 (138)
T ss_dssp             H-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTCE
T ss_pred             H-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCCE
Confidence            3 3444 566777777643    267788888876665

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=98.54  E-value=4.5e-07  Score=95.01  Aligned_cols=114  Identities=17%  Similarity=0.107  Sum_probs=78.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------cC-------------cccc-ChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------LN-------------IASL-GLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-------------v~~~-~l~ell~~  152 (333)
                      ++|||||+|.||..+|..+...|++|++||+.... +.+..           .|             ++.. ++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            68999999999999999999999999999996522 11111           12             1122 45 57899


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      ||+|+.++|...+.+.-+-.+..+.++++++|+..+.+-  ....+.+.++.. -.-.+++.|.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~p-~~~iG~hf~~  452 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTI--DLNKIGERTKSQ-DRIVGAHFFS  452 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHTTTCSCT-TTEEEEEECS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHHhcCC-CCEEEecCCC
Confidence            999999999877666555566777899999996554433  334566665432 1235666666

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.54  E-value=1.5e-07  Score=89.42  Aligned_cols=92  Identities=14%  Similarity=0.120  Sum_probs=69.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC-------CEEEEEcCCCC-----H-HHHHhc--------------Cccc-cChhhhc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG-------MKVIGFDPMVS-----V-EDAAKL--------------NIAS-LGLEDIW  150 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~-----~-~~a~~~--------------gv~~-~~l~ell  150 (333)
                      ++|+|||+|.||..+|..|...|       .+|.+||+...     . +...+.              ++.. .++++++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA   88 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence            58999999999999999998888       89999998764     3 222221              1222 2577888


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcc
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      ++||+|++++|. .....++ ++....+++++++|+++.|-.
T Consensus        89 ~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           89 EDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             TTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             cCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            999999999994 4555555 445567889999999988754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.53  E-value=1.4e-07  Score=94.43  Aligned_cols=105  Identities=11%  Similarity=0.046  Sum_probs=76.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--CCEEEEEcCCCCHHHHHhc--------------------Ccccc-ChhhhccCCCE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--GMKVIGFDPMVSVEDAAKL--------------------NIASL-GLEDIWPLADY  155 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~--------------------gv~~~-~l~ell~~aDv  155 (333)
                      ++|+|||+|.||..+|..|...  |++|++||+..........                    ++... ++.+.+++||+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999876  7999999986422111111                    12222 45677889999


Q ss_pred             EEEecCCchh--------------hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         156 ITVHTPLIPQ--------------TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       156 V~l~~P~t~~--------------t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      |++|+|....              ....+ +...+.+++|.++|+.|.-.+-..+.+.+.+++
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~-~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVS-RTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHH-HHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            9999985331              22222 456678999999999988777677778888876

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.52  E-value=5.9e-08  Score=92.98  Aligned_cols=92  Identities=17%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcC--------------ccc-cChhhhccCCCEEEEecCCc
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLN--------------IAS-LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g--------------v~~-~~l~ell~~aDvV~l~~P~t  163 (333)
                      +|+|||+|.||..+|..|...|++|.+||+... .+...+.+              +.. .+++++++++|+|++++|. 
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-   95 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-   95 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence            899999999999999999999999999998652 22233322              222 2577888999999999994 


Q ss_pred             hhhHhhccHH---HHhccCC-CcEEEEccCCcc
Q psy6348         164 PQTKNLINAE---VLKKCKK-GVRVVNVARGGI  192 (333)
Q Consensus       164 ~~t~~li~~~---~~~~mk~-gailIN~aRg~~  192 (333)
                      .....++...   ....+++ ++++|+++.|-.
T Consensus        96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~  128 (366)
T 1evy_A           96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIE  128 (366)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCC
T ss_pred             HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCC
Confidence            5556665331   4556778 999999987643

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.50  E-value=1.7e-07  Score=90.27  Aligned_cols=91  Identities=14%  Similarity=0.175  Sum_probs=68.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC-------CEEEEEcCCCC-----H-HHHHhc--------------Ccccc-Chhhhc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG-------MKVIGFDPMVS-----V-EDAAKL--------------NIASL-GLEDIW  150 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~-----~-~~a~~~--------------gv~~~-~l~ell  150 (333)
                      ++|+|||+|.||..+|..|...|       .+|.+||+...     . +...+.              ++... ++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            47999999999999999998878       99999998765     3 222221              12222 577888


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHh----ccCCCcEEEEccCCc
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLK----KCKKGVRVVNVARGG  191 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~----~mk~gailIN~aRg~  191 (333)
                      +++|+|++++| +...+.++ .+...    .+++++++|+++.|-
T Consensus       102 ~~aDvVilav~-~~~~~~vl-~~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          102 NDADLLIFIVP-CQYLESVL-ASIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             TTCSEEEECCC-HHHHHHHH-HHHTC---CCCCTTCEEEECCCSC
T ss_pred             cCCCEEEEcCC-HHHHHHHH-HHHhhhhhccCCCCCEEEEeCCcc
Confidence            99999999999 45555555 33445    688899999998773

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.46  E-value=2.1e-07  Score=85.33  Aligned_cols=103  Identities=14%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc---Cc----c-ccChhhhccCCCEEEEecCCchhhHhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL---NI----A-SLGLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~---gv----~-~~~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      ++|+|||+|.||+.+|..|...|++|.+||+.... +.....   |.    . ..+..+.++++|+|++++|.. .+..+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v   79 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA   79 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence            47999999999999999999999999999987632 111111   11    0 123346778999999999954 45555


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      + ++..+.+++++++|++..| +-..+.+.+.+..
T Consensus        80 ~-~~l~~~l~~~~~vv~~~~g-~~~~~~l~~~~~~  112 (291)
T 1ks9_A           80 V-KSLASTLPVTTPILLIHNG-MGTIEELQNIQQP  112 (291)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS-SCTTGGGTTCCSC
T ss_pred             H-HHHHhhCCCCCEEEEecCC-CCcHHHHHHhcCC
Confidence            5 4556778899999998654 3333455555543

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=98.46  E-value=1.3e-07  Score=88.12  Aligned_cols=105  Identities=16%  Similarity=0.122  Sum_probs=74.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-----C-CEEEEEcCCCCHHHHHh-cCcccc--------------ChhhhccCCCEEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-----G-MKVIGFDPMVSVEDAAK-LNIASL--------------GLEDIWPLADYIT  157 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-----G-~~V~~~d~~~~~~~a~~-~gv~~~--------------~l~ell~~aDvV~  157 (333)
                      ++|+|||+|.||..+|..|...     | .+|++||+....+...+ .|+...              +..+.+..+|+|+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi   88 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYIL   88 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEEE
Confidence            4899999999999999999988     9 99999998212334444 565432              2335578999999


Q ss_pred             EecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                      +++|... +..++ ++....++++.++|.+.-| +-..+.+.+.+...+
T Consensus        89 l~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~~  134 (317)
T 2qyt_A           89 FCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDTV  134 (317)
T ss_dssp             ECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTTT
T ss_pred             EecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCCc
Confidence            9999644 45554 3455667888999998766 333466777665433

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.46  E-value=4.6e-07  Score=81.79  Aligned_cols=98  Identities=17%  Similarity=0.224  Sum_probs=72.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEE-EEEcCCCCHHHHHhcCccccChhhhc-cCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKV-IGFDPMVSVEDAAKLNIASLGLEDIW-PLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~~~~a~~~gv~~~~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      .+|||||+|.||+.+++.+...|+++ .+||+....+   +   .+.++++++ .++|+|++++|.... .    +....
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~---~---~~~~~~~l~~~~~DvVv~~~~~~~~-~----~~~~~   69 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHE---K---MVRGIDEFLQREMDVAVEAASQQAV-K----DYAEK   69 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCT---T---EESSHHHHTTSCCSEEEECSCHHHH-H----HHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchh---h---hcCCHHHHhcCCCCEEEECCCHHHH-H----HHHHH
Confidence            37999999999999999998889997 6899864221   1   334789998 799999999994322 2    22235


Q ss_pred             ccCCCcEEEEccCCcccch---HhHHhhhhcCCc
Q psy6348         177 KCKKGVRVVNVARGGIVDE---NALLDSLKCGHC  207 (333)
Q Consensus       177 ~mk~gailIN~aRg~~vd~---~aL~~aL~~g~i  207 (333)
                      .++.|..+|..+.+..-+.   +.|.++.++...
T Consensus        70 ~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~  103 (236)
T 2dc1_A           70 ILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR  103 (236)
T ss_dssp             HHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred             HHHCCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence            5788999999988776655   567777665433

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.45  E-value=3.5e-07  Score=78.90  Aligned_cols=93  Identities=16%  Similarity=0.204  Sum_probs=66.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhC-CCEEEEEcCCCCH-HHHHhcCcccc-----C---hhhh--ccCCCEEEEecC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAF-GMKVIGFDPMVSV-EDAAKLNIASL-----G---LEDI--WPLADYITVHTP  161 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~-~~a~~~gv~~~-----~---l~el--l~~aDvV~l~~P  161 (333)
                      .++.+++++|+|+|.+|+.+|+.|+.. |++|+++|+.... +.+.+.|+...     +   +.++  +.++|+|++++|
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~  114 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMP  114 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCS
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCC
Confidence            457788999999999999999999999 9999999986532 33455565432     1   3454  778999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      ..+.+..++  ..+..+.++..+|..+
T Consensus       115 ~~~~~~~~~--~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A          115 HHQGNQTAL--EQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             SHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred             ChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence            655444433  3455566666666543

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=98.43  E-value=4.2e-07  Score=86.31  Aligned_cols=108  Identities=13%  Similarity=0.158  Sum_probs=77.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--------------cChhhhccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--------------LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--------------~~l~ell~~aDvV~l~~P~t  163 (333)
                      .++|+|||+|.||..+|..|...|.+|.+|++....+...+.|...              .++++ +..+|+|++++|. 
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence            3689999999999999999999999999999853334444555432              14555 5889999999994 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccCCc------------------ccchHhHHhhhhcCCce
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVARGG------------------IVDENALLDSLKCGHCG  208 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aRg~------------------~vd~~aL~~aL~~g~i~  208 (333)
                      ..+..++ ++....+++++++|.+..|=                  +-.++.+.+.+...++.
T Consensus        81 ~~~~~~~-~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~v~  142 (335)
T 3ghy_A           81 PALESVA-AGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTRHVL  142 (335)
T ss_dssp             HHHHHHH-GGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGGGEE
T ss_pred             hhHHHHH-HHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcccEE
Confidence            4555554 33445678899999998882                  23345677777555554

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.41  E-value=4.2e-07  Score=76.59  Aligned_cols=102  Identities=17%  Similarity=0.144  Sum_probs=78.0

Q ss_pred             CCEEEEEec----ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          98 GKTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        98 gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      -++|+|||+    |++|..+++.|...|++|+.+||....+  +-.|+... +++|+....|++++++| .+....++. 
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~--~i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~-   88 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGK--TLLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ-   88 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTS--EETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH-
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCccccc--ccCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH-
Confidence            578999999    8999999999999999999999865101  12476655 79999999999999999 466677763 


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +..+ ...+.++++.+  ..  ++++.+++++..++
T Consensus        89 ~~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi~  119 (145)
T 2duw_A           89 EAIA-IGAKTLWLQLG--VI--NEQAAVLAREAGLS  119 (145)
T ss_dssp             HHHH-HTCCEEECCTT--CC--CHHHHHHHHTTTCE
T ss_pred             HHHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCCE
Confidence            3333 56677777753  22  78888888887776

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=98.39  E-value=2e-06  Score=81.06  Aligned_cols=106  Identities=13%  Similarity=0.093  Sum_probs=77.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc---------------c-cChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA---------------S-LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~---------------~-~~l~ell~~aDvV~l~~P~  162 (333)
                      ++|+|||.|.||..+|..|...|.+|.+|++.. .+..++.|+.               . .+++++.+.+|+|++++|.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~   81 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV   81 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence            589999999999999999999999999999975 3444444431               1 2456666689999999995


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      .. +..++ +.....+++++++|.+.-| +-.++.+.+.+...++.
T Consensus        82 ~~-~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl  124 (320)
T 3i83_A           82 VE-GADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI  124 (320)
T ss_dssp             CT-TCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred             CC-hHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence            43 44443 4455668889999988765 33457777777655544

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=98.38  E-value=1e-06  Score=81.78  Aligned_cols=93  Identities=19%  Similarity=0.141  Sum_probs=66.9

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHH-
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL-  175 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~-  175 (333)
                      ||++.|+|.|.+|++++..|...|.+|.+++|+... +...+.++...+++++- ++|+|+.++|........+..+.+ 
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~-~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKS-AFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSS-CCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhc-cCCEEEEcccCCCCCCCCCChHHHH
Confidence            899999999999999999999999999999998743 22225666655666654 899999999964322122444322 


Q ss_pred             hccCCCcEEEEccCCc
Q psy6348         176 KKCKKGVRVVNVARGG  191 (333)
Q Consensus       176 ~~mk~gailIN~aRg~  191 (333)
                      +.++++.+++|+....
T Consensus       197 ~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHHHCSEEEESCCSS
T ss_pred             hhCCCCCEEEEeCCCC
Confidence            2456666777766654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=98.31  E-value=2.8e-06  Score=80.72  Aligned_cols=132  Identities=16%  Similarity=0.102  Sum_probs=93.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-----------HhcCc--------------cc-cChhhhc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-----------AKLNI--------------AS-LGLEDIW  150 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-----------~~~gv--------------~~-~~l~ell  150 (333)
                      -++|+|||.|.||+.+|..+...|++|+.||+.... +.+           .+.|.              .. .++++.+
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            468999999999999999999999999999986521 111           01111              11 2577889


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcC
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIK  230 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~  230 (333)
                      ++||+|+=++|-+-+.+.-+-++.=+.++++++|-..+++  +...+|.++++. .=+-.++..|.+-|.     -||.+
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP~~~-----m~LVE  157 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNPPYY-----IPLVE  157 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSSTTT-----CCEEE
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCCccc-----cchHH
Confidence            9999999999998888887777777889999998766555  455677777653 333456666654332     24443


Q ss_pred             CCcEEEccCC
Q psy6348         231 HPKVIVTPHL  240 (333)
Q Consensus       231 ~pnvi~TPHi  240 (333)
                         |+-+|+.
T Consensus       158 ---iv~g~~T  164 (319)
T 3ado_A          158 ---LVPHPET  164 (319)
T ss_dssp             ---EEECTTC
T ss_pred             ---hcCCCCC
Confidence               5666653

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.30  E-value=2.2e-06  Score=72.07  Aligned_cols=98  Identities=14%  Similarity=0.088  Sum_probs=63.8

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-hcCcccc--C------hhhh-ccCCCEEEEec
Q psy6348          92 TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-KLNIASL--G------LEDI-WPLADYITVHT  160 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~gv~~~--~------l~el-l~~aDvV~l~~  160 (333)
                      +.....++++.|+|+|.+|+.+|+.|+..|.+|+++|+.... +.+. ..|....  +      +.+. +.++|+|++++
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~   92 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFT   92 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECS
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEe
Confidence            345677899999999999999999999999999999986532 2233 3454322  1      2333 67899999999


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      |.......+  ......+.+...+|-..++.
T Consensus        93 ~~~~~~~~~--~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           93 NDDSTNFFI--SMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             SCHHHHHHH--HHHHHHTSCCSEEEEECSSG
T ss_pred             CCcHHHHHH--HHHHHHHCCCCeEEEEECCH
Confidence            854332222  33444445556666655554

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=98.30  E-value=3.7e-06  Score=78.94  Aligned_cols=107  Identities=17%  Similarity=0.138  Sum_probs=77.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc---------------cChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS---------------LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~---------------~~l~ell~~aDvV~l~~P~t  163 (333)
                      ++|+|||.|.||..+|..|...|.+|..|++.. .+..++.|+..               .+.+ .+..+|+|++++|..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~-~~~~~D~vilavk~~   80 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPE-EIGPMDLVLVGLKTF   80 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHH-HHCCCSEEEECCCGG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHH-HcCCCCEEEEecCCC
Confidence            579999999999999999999999999999875 44455555421               1233 367899999999943


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEE
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGA  210 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ga  210 (333)
                       .++.++ ++....+++++++|.+.-| +-.++.+.+.+...++.++
T Consensus        81 -~~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           81 -ANSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIGG  124 (312)
T ss_dssp             -GGGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEEE
T ss_pred             -CcHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence             444443 4455668899999998766 3345677777765555443

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.28  E-value=2.1e-06  Score=80.51  Aligned_cols=94  Identities=18%  Similarity=0.166  Sum_probs=66.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcCc---ccc---ChhhhccCCCEEEEecCCch
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLNI---ASL---GLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~gv---~~~---~l~ell~~aDvV~l~~P~t~  164 (333)
                      .++.|++++|+|.|.+|+.++..|...|. +|++++|+...  +.+++.+.   ...   ++.+.+.++|+|+.++|...
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            45789999999999999999999999998 99999997532  22333333   222   45677889999999999643


Q ss_pred             hhH--h-hccHHHHhccCCCcEEEEccCC
Q psy6348         165 QTK--N-LINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       165 ~t~--~-li~~~~~~~mk~gailIN~aRg  190 (333)
                      ...  . .+.   .+.++++.+++|+.-.
T Consensus       217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          217 HPRVEVQPLS---LERLRPGVIVSDIIYN  242 (297)
T ss_dssp             SSCCSCCSSC---CTTCCTTCEEEECCCS
T ss_pred             CCCCCCCCCC---HHHcCCCCEEEEcCCC
Confidence            210  0 122   2346677777777663

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=98.28  E-value=2.7e-07  Score=85.30  Aligned_cols=86  Identities=13%  Similarity=0.025  Sum_probs=56.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEE-EEEcCCCCH-HHH-HhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKV-IGFDPMVSV-EDA-AKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~~-~~a-~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      .+|||||+|+||+.+|+.|... ++| .+||+.... +.. +..|....+++++++++|+|++++|... ...+     +
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~~~v-----~   75 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-IKTV-----A   75 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-HHHH-----H
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-HHHH-----H
Confidence            4799999999999999999877 888 489986522 222 3446522368888999999999999543 2333     3


Q ss_pred             hcc-CCCcEEEEccCCc
Q psy6348         176 KKC-KKGVRVVNVARGG  191 (333)
Q Consensus       176 ~~m-k~gailIN~aRg~  191 (333)
                      ..+ +++.++||++-+-
T Consensus        76 ~~l~~~~~ivi~~s~~~   92 (276)
T 2i76_A           76 NHLNLGDAVLVHCSGFL   92 (276)
T ss_dssp             TTTCCSSCCEEECCSSS
T ss_pred             HHhccCCCEEEECCCCC
Confidence            333 6889999998553

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.27  E-value=8e-07  Score=82.84  Aligned_cols=95  Identities=18%  Similarity=0.127  Sum_probs=63.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhcCccc---cChhhhccCCCEEEEecCCch--hh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKLNIAS---LGLEDIWPLADYITVHTPLIP--QT  166 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~--~t  166 (333)
                      +.++.||++.|+|.|.+|+.++..|...|. +|++++|+..........+..   .++.++++++|+|+.++|..-  ..
T Consensus       112 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~  191 (277)
T 3don_A          112 YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNT  191 (277)
T ss_dssp             STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCC
Confidence            346789999999999999999999999999 899999975332111112222   246677889999999999531  11


Q ss_pred             HhhccHHHHhccCCCcEEEEccCC
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      ...+.   .+.++++.+++++.-.
T Consensus       192 ~~~l~---~~~l~~~~~V~D~vY~  212 (277)
T 3don_A          192 DSVIS---LNRLASHTLVSDIVYN  212 (277)
T ss_dssp             CCSSC---CTTCCSSCEEEESCCS
T ss_pred             cCCCC---HHHcCCCCEEEEecCC
Confidence            11121   2445666666666554

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=98.26  E-value=3.2e-06  Score=79.74  Aligned_cols=103  Identities=17%  Similarity=0.178  Sum_probs=72.0

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccc-------------c-ChhhhccCCCEEEEec
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIAS-------------L-GLEDIWPLADYITVHT  160 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~-------------~-~l~ell~~aDvV~l~~  160 (333)
                      ...++|+|||.|.||..+|..|...|.+|..| ++. ..+...+.|...             . ++++ +..+|+|++++
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav   94 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV   94 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred             ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence            34679999999999999999999999999999 654 223334444321             1 3443 58999999999


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLK  203 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~  203 (333)
                      |.. .++.++ ++....+++++++|.+.-| +-.++.+.+.+.
T Consensus        95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nG-i~~~~~l~~~~~  134 (318)
T 3hwr_A           95 KST-DTQSAA-LAMKPALAKSALVLSLQNG-VENADTLRSLLE  134 (318)
T ss_dssp             CGG-GHHHHH-HHHTTTSCTTCEEEEECSS-SSHHHHHHHHCC
T ss_pred             ccc-cHHHHH-HHHHHhcCCCCEEEEeCCC-CCcHHHHHHHcC
Confidence            954 555554 4455678899999998666 333356666664

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.26  E-value=1.8e-06  Score=81.14  Aligned_cols=81  Identities=26%  Similarity=0.287  Sum_probs=67.4

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChh--hhccCCCEEEEecCCchhhHhh
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLE--DIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~--ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      +.++.||++.|||.|. +|+.+|..|...|++|+.++++..            +++  +.+++||+|+.++|.    .++
T Consensus       160 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------~l~l~~~~~~ADIVI~Avg~----p~~  223 (300)
T 4a26_A          160 GIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------TEDMIDYLRTADIVIAAMGQ----PGY  223 (300)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------HHHHHHHHHTCSEEEECSCC----TTC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------CchhhhhhccCCEEEECCCC----CCC
Confidence            4679999999999988 799999999999999999987432            344  889999999999984    345


Q ss_pred             ccHHHHhccCCCcEEEEccCCcc
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~  192 (333)
                      +..+.   +|+|+++||++.-.+
T Consensus       224 I~~~~---vk~GavVIDvgi~~~  243 (300)
T 4a26_A          224 VKGEW---IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             BCGGG---SCTTCEEEECCCEEE
T ss_pred             CcHHh---cCCCcEEEEEeccCC
Confidence            66544   699999999987654

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.23  E-value=2.8e-06  Score=79.32  Aligned_cols=80  Identities=23%  Similarity=0.286  Sum_probs=67.5

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|. +|+.+|..|...|++|+.++++.            .++++.+++||+|+.+++.    .+++.
T Consensus       156 ~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I~  219 (285)
T 3l07_A          156 GIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFIT  219 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHhcccCCEEEECCCC----CCCCC
Confidence            4679999999999988 69999999999999999998642            2688899999999999983    34566


Q ss_pred             HHHHhccCCCcEEEEccCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~  191 (333)
                      .+.   +|+|+++||++.-.
T Consensus       220 ~~~---vk~GavVIDvgi~~  236 (285)
T 3l07_A          220 ADM---VKEGAVVIDVGINH  236 (285)
T ss_dssp             GGG---SCTTCEEEECCCEE
T ss_pred             HHH---cCCCcEEEEecccC
Confidence            544   59999999998665

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.21  E-value=7.4e-06  Score=66.41  Aligned_cols=88  Identities=17%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-hcCcccc-----Ch---h-hhccCCCEEEEecCCchhh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-KLNIASL-----GL---E-DIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~gv~~~-----~l---~-ell~~aDvV~l~~P~t~~t  166 (333)
                      +++++|+|+|.+|+.+|+.|...|++|+++|+.... +... ..++...     +.   . ..+.++|+|++++|.....
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            578999999999999999999999999999986522 2222 2354321     22   2 2267899999999864332


Q ss_pred             HhhccHHHHhccCCCcEEEEc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~  187 (333)
                        ..-......++++.+++-+
T Consensus        84 --~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           84 --LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             --HHHHHHHHHTTCCCEEEEC
T ss_pred             --HHHHHHHHHcCCCEEEEEe
Confidence              2223344557777666543

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.21  E-value=4.4e-06  Score=78.51  Aligned_cols=82  Identities=17%  Similarity=0.212  Sum_probs=68.4

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.|+++.|||.|+ +|+.+|+.|...|.+|+.++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       160 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I~  223 (301)
T 1a4i_A          160 GVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQ----PEMVK  223 (301)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCBC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------ccHHHHhccCCEEEECCCC----cccCC
Confidence            5689999999999996 79999999999999999998542            3688899999999999985    33576


Q ss_pred             HHHHhccCCCcEEEEccCCccc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIV  193 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~v  193 (333)
                      .+.   +|+|+++||++...+-
T Consensus       224 ~~~---vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          224 GEW---IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             GGG---SCTTCEEEECCCBC--
T ss_pred             HHH---cCCCcEEEEccCCCcc
Confidence            655   5899999999987644

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.21  E-value=3.2e-06  Score=78.93  Aligned_cols=81  Identities=27%  Similarity=0.323  Sum_probs=68.3

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|. +|+.+|..|...|++|+.++++.            .++++.+++||+|+.+++.    .+++.
T Consensus       155 ~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~  218 (285)
T 3p2o_A          155 EIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLLR  218 (285)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHTTCSEEEECSSC----TTCBC
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhhcCCEEEECCCC----CCcCC
Confidence            5679999999999988 69999999999999999998642            3678899999999999983    34566


Q ss_pred             HHHHhccCCCcEEEEccCCcc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~  192 (333)
                      .+.   +|+|+++||++.-.+
T Consensus       219 ~~~---vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          219 SDM---VKEGVIVVDVGINRL  236 (285)
T ss_dssp             GGG---SCTTEEEEECCCEEC
T ss_pred             HHH---cCCCeEEEEeccCcc
Confidence            544   599999999987653

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.21  E-value=2.3e-06  Score=70.82  Aligned_cols=89  Identities=10%  Similarity=0.243  Sum_probs=62.5

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc--C------hhhh-ccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL--G------LEDI-WPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~--~------l~el-l~~aDvV~l~~P~t~~t~  167 (333)
                      .+++.|+|+|++|+.+|+.|+..|++|+++|+... .+.+++.|+..+  +      ++++ +.++|+|++++|....+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            35799999999999999999999999999999763 234455676432  1      2222 568999999999665544


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                      .++  .....+.++..+|-.+
T Consensus        87 ~~~--~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           87 EIV--ASARAKNPDIEIIARA  105 (140)
T ss_dssp             HHH--HHHHHHCSSSEEEEEE
T ss_pred             HHH--HHHHHHCCCCeEEEEE
Confidence            332  2445556666666543

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.20  E-value=2.2e-06  Score=80.03  Aligned_cols=81  Identities=19%  Similarity=0.287  Sum_probs=68.5

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|. +|+.+|+.|...|.+|+.++++.            .++.+.+++||+|+.+++.    .+++.
T Consensus       154 ~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~lI~  217 (288)
T 1b0a_A          154 NIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGK----PGFIP  217 (288)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCC----TTCBC
T ss_pred             CCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhccCCEEEECCCC----cCcCC
Confidence            5689999999999997 69999999999999999998643            3678889999999999983    23566


Q ss_pred             HHHHhccCCCcEEEEccCCcc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~  192 (333)
                      .+.   +|+|+++||++...+
T Consensus       218 ~~~---vk~GavVIDVgi~r~  235 (288)
T 1b0a_A          218 GDW---IKEGAIVIDVGINRL  235 (288)
T ss_dssp             TTT---SCTTCEEEECCCEEC
T ss_pred             HHH---cCCCcEEEEccCCcc
Confidence            655   599999999997664

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.20  E-value=3.7e-06  Score=78.47  Aligned_cols=81  Identities=28%  Similarity=0.382  Sum_probs=68.1

Q ss_pred             ccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +.++.||++.|||.|. +|+.+|..|...|++|+.++++.            .++++.+++||+|+.++|.    .+++.
T Consensus       156 ~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------~~L~~~~~~ADIVI~Avg~----p~~I~  219 (286)
T 4a5o_A          156 GADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------RDLADHVSRADLVVVAAGK----PGLVK  219 (286)
T ss_dssp             TCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHTCSEEEECCCC----TTCBC
T ss_pred             CCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------cCHHHHhccCCEEEECCCC----CCCCC
Confidence            5689999999999987 79999999999999999997642            2578889999999999984    34566


Q ss_pred             HHHHhccCCCcEEEEccCCcc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~  192 (333)
                      .+.   +|+|+++||++.-.+
T Consensus       220 ~~~---vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          220 GEW---IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             GGG---SCTTCEEEECCSCSS
T ss_pred             HHH---cCCCeEEEEeccccc
Confidence            554   599999999987653

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.20  E-value=3.7e-06  Score=78.31  Aligned_cols=81  Identities=20%  Similarity=0.291  Sum_probs=68.2

Q ss_pred             ccccCCCEEEEEecChH-HHHHHHHHhhC--CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhh
Q psy6348          93 GTELYGKTLAVLGLGRI-GREVALRMQAF--GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        93 g~~l~gktvGIIGlG~I-G~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      +.++.||++.|||.|.| |+.+|+.|...  |.+|+.++++.            .++.+.+++||+|+.+++.    .++
T Consensus       153 ~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~  216 (281)
T 2c2x_A          153 DISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------RDLPALTRQADIVVAAVGV----AHL  216 (281)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------SCHHHHHTTCSEEEECSCC----TTC
T ss_pred             CCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------hHHHHHHhhCCEEEECCCC----Ccc
Confidence            56899999999999985 99999999999  89999997643            3688899999999999983    235


Q ss_pred             ccHHHHhccCCCcEEEEccCCcc
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~  192 (333)
                      +..+.   +|+|+++||++...+
T Consensus       217 I~~~~---vk~GavVIDVgi~r~  236 (281)
T 2c2x_A          217 LTADM---VRPGAAVIDVGVSRT  236 (281)
T ss_dssp             BCGGG---SCTTCEEEECCEEEE
T ss_pred             cCHHH---cCCCcEEEEccCCCC
Confidence            76655   589999999987654

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.18  E-value=2.9e-06  Score=78.81  Aligned_cols=77  Identities=13%  Similarity=0.176  Sum_probs=65.8

Q ss_pred             cCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348          96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus        96 l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      +.||++.|||.|. +|+.+|..|.+.|++|+.++++.            .++++.+++||+|+.++|.    .+++..+.
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------KDIGSMTRSSKIVVVAVGR----PGFLNREM  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHHSSEEEECSSC----TTCBCGGG
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------ccHHHhhccCCEEEECCCC----CccccHhh
Confidence            8999999999986 89999999999999999998642            3678899999999999984    33566654


Q ss_pred             HhccCCCcEEEEccCCc
Q psy6348         175 LKKCKKGVRVVNVARGG  191 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~  191 (333)
                         +|+|+++||++.-.
T Consensus       212 ---vk~GavVIDvgi~~  225 (276)
T 3ngx_A          212 ---VTPGSVVIDVGINY  225 (276)
T ss_dssp             ---CCTTCEEEECCCEE
T ss_pred             ---ccCCcEEEEeccCc
Confidence               59999999998765

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.16  E-value=3.8e-06  Score=77.15  Aligned_cols=102  Identities=20%  Similarity=0.210  Sum_probs=73.7

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc----Cc-cccChhhhccCCCEEEEecCCchhh-H
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL----NI-ASLGLEDIWPLADYITVHTPLIPQT-K  167 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~----gv-~~~~l~ell~~aDvV~l~~P~t~~t-~  167 (333)
                      .+.| +++|||.|.+|++++..|...|. +|++++|+.  +.++++    +. ...++.+.++++|+|+.++|..-.. .
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~--~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~  182 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI--ERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEE  182 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH--HHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCC
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCC
Confidence            3578 99999999999999999999999 899999954  444433    21 2235678889999999999853211 1


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      ..+..+   .++++.+++++.-+   .+.-|.++.+.|
T Consensus       183 ~~i~~~---~l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          183 LPVSDD---SLKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             CSCCHH---HHTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             CCCCHH---HhCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            233333   35789999999888   555555666655

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.15  E-value=6.2e-06  Score=64.85  Aligned_cols=87  Identities=17%  Similarity=0.242  Sum_probs=60.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH-HHHHhcCcccc--------ChhhhccCCCEEEEecCCchhh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV-EDAAKLNIASL--------GLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~-~~a~~~gv~~~--------~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      .+++++|+|.|.||+.+++.|...| ++|+++|+.... +.....++...        ++.++++++|+|+.++|... +
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~   82 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T   82 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence            3579999999999999999999999 899999996532 22333444321        35567889999999998432 2


Q ss_pred             HhhccHHHHhccCCCcEEEEcc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~a  188 (333)
                      ..++.    ...+.|...++.+
T Consensus        83 ~~~~~----~~~~~g~~~~~~~  100 (118)
T 3ic5_A           83 PIIAK----AAKAAGAHYFDLT  100 (118)
T ss_dssp             HHHHH----HHHHTTCEEECCC
T ss_pred             HHHHH----HHHHhCCCEEEec
Confidence            22221    2235677777764

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=98.14  E-value=5.1e-06  Score=82.25  Aligned_cols=139  Identities=18%  Similarity=0.215  Sum_probs=84.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHh--------------------cC-cccc-ChhhhccCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK--------------------LN-IASL-GLEDIWPLAD  154 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-v~~~-~l~ell~~aD  154 (333)
                      +-++|+|||+|.+|..+|..+...|++|++||.....-....                    .| ..+. +.++.++.||
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad   99 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATD   99 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSS
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCC
Confidence            446999999999999999999999999999997542211111                    11 2222 5778899999


Q ss_pred             EEEEecCCchh------hHhhcc--HHHHhccC---CCcEEEEccCCcccchHhHHh-hhhcCCceEEEecc-CCCCCCC
Q psy6348         155 YITVHTPLIPQ------TKNLIN--AEVLKKCK---KGVRVVNVARGGIVDENALLD-SLKCGHCGGAALDV-FCEEPPK  221 (333)
Q Consensus       155 vV~l~~P~t~~------t~~li~--~~~~~~mk---~gailIN~aRg~~vd~~aL~~-aL~~g~i~gaalDV-~~~EP~~  221 (333)
                      ++++|+|....      ...+..  +..-+.|+   +|.++|.-|+-.+=..+.+.. .|++.. .+.-++| |.+|-..
T Consensus       100 ~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~-~~~~f~v~~~PErl~  178 (444)
T 3vtf_A          100 ATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEA-GGVKFSVASNPEFLR  178 (444)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTT-TTCCCEEEECCCCCC
T ss_pred             ceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhC-CCCCceeecCccccc
Confidence            99999983211      111211  22334454   688999999977766666543 333322 1111221 4455422


Q ss_pred             C-ccchhhcCCCcEEE
Q psy6348         222 S-EQTFELIKHPKVIV  236 (333)
Q Consensus       222 ~-~~~~~L~~~pnvi~  236 (333)
                      + ...+.+...|+|++
T Consensus       179 eG~a~~d~~~~~riVi  194 (444)
T 3vtf_A          179 EGSALEDFFKPDRIVI  194 (444)
T ss_dssp             TTSHHHHHHSCSCEEE
T ss_pred             CCccccccccCCcEEE
Confidence            1 11245667777763

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.13  E-value=1.6e-06  Score=82.42  Aligned_cols=92  Identities=25%  Similarity=0.283  Sum_probs=68.9

Q ss_pred             CccccCCCEEEEEecChH-HHHHHHHHhhCCCEEEEEcCCCC--HHHHHhcCc---cc--------cChhhhccCCCEEE
Q psy6348          92 TGTELYGKTLAVLGLGRI-GREVALRMQAFGMKVIGFDPMVS--VEDAAKLNI---AS--------LGLEDIWPLADYIT  157 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~I-G~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~gv---~~--------~~l~ell~~aDvV~  157 (333)
                      .|.++.|+++.|||.|.| |+.+|+.|.+.|.+|+.+|++..  .+.+..++.   ..        .++++.+++||+|+
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI  250 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  250 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence            466899999999999975 99999999999999999988521  011111111   11        35788999999999


Q ss_pred             EecCCchhhHhh-ccHHHHhccCCCcEEEEccCC
Q psy6348         158 VHTPLIPQTKNL-INAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       158 l~~P~t~~t~~l-i~~~~~~~mk~gailIN~aRg  190 (333)
                      .+++.    .++ |..+.   +|+|+++||+|..
T Consensus       251 sAtg~----p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          251 TGVPS----ENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             ECCCC----TTCCBCTTT---SCTTEEEEECSSS
T ss_pred             ECCCC----CcceeCHHH---cCCCeEEEEcCCC
Confidence            99974    233 65555   5899999999764

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.12  E-value=7.6e-06  Score=77.44  Aligned_cols=90  Identities=22%  Similarity=0.260  Sum_probs=67.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh-CC-CEEEEEcCCCCHHHHHh----cCcc--ccChhhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA-FG-MKVIGFDPMVSVEDAAK----LNIA--SLGLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~-~G-~~V~~~d~~~~~~~a~~----~gv~--~~~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      ..++++|||.|.+|+.+++.+.. ++ -+|.+||++...+.+++    .|+.  .+++++++++||+|++|+|..   ..
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~---~p  196 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRST---TP  196 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCS---SC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCC---Cc
Confidence            35799999999999999998875 34 58999999832333332    3553  348999999999999999854   34


Q ss_pred             hccHHHHhccCCCcEEEEccCCcc
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~  192 (333)
                      ++..   +.+++|+.+++++....
T Consensus       197 vl~~---~~l~~G~~V~~vGs~~p  217 (313)
T 3hdj_A          197 LFAG---QALRAGAFVGAIGSSLP  217 (313)
T ss_dssp             SSCG---GGCCTTCEEEECCCSST
T ss_pred             ccCH---HHcCCCcEEEECCCCCC
Confidence            5543   45899999999987543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.11  E-value=8.8e-06  Score=66.85  Aligned_cols=87  Identities=15%  Similarity=0.108  Sum_probs=57.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----C---hhhh-ccCCCEEEEecCCchhh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----G---LEDI-WPLADYITVHTPLIPQT  166 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----~---l~el-l~~aDvV~l~~P~t~~t  166 (333)
                      .++++.|+|+|.+|+.+|+.|...|++|+++|+... .+...+.++...     +   ++++ +.++|+|++++|..+  
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~--   82 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDE--   82 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHH--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHH--
Confidence            457899999999999999999999999999998652 233444565422     1   2222 468999999999432  


Q ss_pred             HhhccHHHHhccCCCcEEE
Q psy6348         167 KNLINAEVLKKCKKGVRVV  185 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailI  185 (333)
                      .++.-......+....+++
T Consensus        83 ~n~~~~~~a~~~~~~~iia  101 (141)
T 3llv_A           83 FNLKILKALRSVSDVYAIV  101 (141)
T ss_dssp             HHHHHHHHHHHHCCCCEEE
T ss_pred             HHHHHHHHHHHhCCceEEE
Confidence            3333334444455333444

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=98.06  E-value=1.3e-05  Score=75.28  Aligned_cols=104  Identities=14%  Similarity=0.083  Sum_probs=70.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccccC----------h-hhhccCCCEEEEecCCchhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASLG----------L-EDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~~----------l-~ell~~aDvV~l~~P~t~~t  166 (333)
                      ++|+|||.|.||..+|..|. .|.+|.+|++... .+..++.|+...+          . ++....+|+|++++|. ..+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~-~~~   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ-HQL   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG-GGH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH-HHH
Confidence            58999999999999999999 8999999999652 3444555654321          1 3567889999999984 344


Q ss_pred             HhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ..++  +.++.+.++. +|.+.-| +-.++.+.+.+...++.
T Consensus        81 ~~~l--~~l~~~~~~~-ivs~~nG-i~~~e~l~~~~~~~~vl  118 (307)
T 3ego_A           81 QSVF--SSLERIGKTN-ILFLQNG-MGHIHDLKDWHVGHSIY  118 (307)
T ss_dssp             HHHH--HHTTSSCCCE-EEECCSS-SHHHHHHHTCCCSCEEE
T ss_pred             HHHH--HHhhcCCCCe-EEEecCC-ccHHHHHHHhCCCCcEE
Confidence            4444  2334445666 7777655 33344555555544443

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=98.06  E-value=5.8e-06  Score=77.09  Aligned_cols=71  Identities=17%  Similarity=0.129  Sum_probs=55.8

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcC----ccccChhhhccCCCEEEEecCCc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLN----IASLGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g----v~~~~l~ell~~aDvV~l~~P~t  163 (333)
                      +.++.||++.|+|.|.+|+.++..|...|. +|.+++|....  +.+++.+    +...+++++..++|+|+.++|..
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~g  198 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSAS  198 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCC
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCC
Confidence            456899999999999999999999999997 99999997532  2222222    33446777778999999999954

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=98.04  E-value=1.3e-05  Score=73.96  Aligned_cols=71  Identities=17%  Similarity=0.133  Sum_probs=52.8

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcC----ccccChhhhcc-CCCEEEEecCCc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLN----IASLGLEDIWP-LADYITVHTPLI  163 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----v~~~~l~ell~-~aDvV~l~~P~t  163 (333)
                      +.++.||++.|+|.|.+|++++..|...|.+|++++|+...  +.+++.+    +...+++++.+ ++|+|+.++|..
T Consensus       114 ~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~  191 (272)
T 1p77_A          114 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG  191 (272)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCC
Confidence            34678999999999999999999999999999999997532  2222222    22235555544 899999999954

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=98.03  E-value=1.9e-05  Score=73.34  Aligned_cols=70  Identities=17%  Similarity=0.161  Sum_probs=53.8

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcC---ccccChhhhc-cCCCEEEEecCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLN---IASLGLEDIW-PLADYITVHTPL  162 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~g---v~~~~l~ell-~~aDvV~l~~P~  162 (333)
                      +.++.||++.|+|.|.+|+.++..|...|. +|++++|+...  +.+++.+   +...+++++- .++|+|+.++|.
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~  191 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSA  191 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSG
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCC
Confidence            456889999999999999999999999996 99999997532  2223333   3334556554 789999999984

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.03  E-value=1e-05  Score=77.75  Aligned_cols=90  Identities=18%  Similarity=0.224  Sum_probs=65.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHh-hCC-CEEEEEcCCCCH-H-HHHhc----Cc--cc-cChhhhccCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQ-AFG-MKVIGFDPMVSV-E-DAAKL----NI--AS-LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~-~~G-~~V~~~d~~~~~-~-~a~~~----gv--~~-~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ..++++|||.|.+|+.+++.+. ..+ .+|.+||+.... + .++++    |+  .. .++++++++||+|++|+|... 
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~-  206 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKA-  206 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSS-
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCC-
Confidence            4679999999999999998764 344 589999997522 2 22232    53  22 378899999999999999652 


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      ...++..   +.+++|..+++++..
T Consensus       207 ~~pvl~~---~~l~~G~~V~~vgs~  228 (350)
T 1x7d_A          207 YATIITP---DMLEPGMHLNAVGGD  228 (350)
T ss_dssp             EEEEECG---GGCCTTCEEEECSCC
T ss_pred             CCceecH---HHcCCCCEEEECCCC
Confidence            2344443   457999999999864

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.02  E-value=7e-06  Score=66.76  Aligned_cols=93  Identities=20%  Similarity=0.271  Sum_probs=58.6

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-----C---hhhh-ccCCCEEEEecCCchh
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-----G---LEDI-WPLADYITVHTPLIPQ  165 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-----~---l~el-l~~aDvV~l~~P~t~~  165 (333)
                      +.++++.|+|+|.+|+.+++.|...|++|+++|+.... +...+.+....     +   ++++ +.++|+|+.++|...+
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            56789999999999999999999999999999985422 22222343221     1   2333 6789999999986422


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      + +..-......+.+. .+|-.+.+
T Consensus        84 ~-~~~~~~~~~~~~~~-~ii~~~~~  106 (144)
T 2hmt_A           84 A-STLTTLLLKELDIP-NIWVKAQN  106 (144)
T ss_dssp             H-HHHHHHHHHHTTCS-EEEEECCS
T ss_pred             H-HHHHHHHHHHcCCC-eEEEEeCC
Confidence            2 22223334445565 55544444

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.01  E-value=2e-05  Score=74.22  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=71.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHH--h-------c----Cccc-cChhhhccCCCEEEEecCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAA--K-------L----NIAS-LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~--~-------~----gv~~-~~l~ell~~aDvV~l~~P~  162 (333)
                      .++|+|||.|.||..+|..+...|+ +|+.||+........  +       .    .+.. .++ +.+++||+|+++++.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999998898 999999876432111  0       0    1222 245 678999999999932


Q ss_pred             --------------chhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhh--cCCceEE
Q psy6348         163 --------------IPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLK--CGHCGGA  210 (333)
Q Consensus       163 --------------t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~--~g~i~ga  210 (333)
                                    +.....-+-++.-+ ..+++++|+++...-+....+.+...  ..++.|.
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~-~~~~~iii~~sNp~~~~~~~~~~~~~~~~~rviG~  145 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKK-YCPNAFVICITNPLDVMVSHFQKVSGLPHNKVCGM  145 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHH-HCTTSEEEECCSSHHHHHHHHHHHHCCCGGGEEES
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHH-HCCCcEEEEeCChHHHHHHHHHHhhCCCHHHEEec
Confidence                          11111111122223 35699999998876565666666542  2345444

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=98.00  E-value=1.2e-05  Score=77.99  Aligned_cols=87  Identities=13%  Similarity=0.084  Sum_probs=61.8

Q ss_pred             CEEEEEecChHHHHHHHHHhh-CCCEEEEEcCCC-CHH---H-HHhcC------------cc-------c-cChhhhccC
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-FGMKVIGFDPMV-SVE---D-AAKLN------------IA-------S-LGLEDIWPL  152 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~~d~~~-~~~---~-a~~~g------------v~-------~-~~l~ell~~  152 (333)
                      ++|+|||.|.||..+|..|.. .|++|.+||++. +.+   . .++.|            ..       . .+++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            489999999999999999977 599999999322 122   2 12222            11       1 156788899


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      +|+|++++|.. ..+.++ ++....+++++++++.
T Consensus        83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            99999999953 344444 4455667889999985

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.97  E-value=3e-05  Score=71.46  Aligned_cols=71  Identities=23%  Similarity=0.159  Sum_probs=52.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcC----ccccChhhhc-cCCCEEEEecCCch
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLN----IASLGLEDIW-PLADYITVHTPLIP  164 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----v~~~~l~ell-~~aDvV~l~~P~t~  164 (333)
                      .++.||++.|+|.|.+|+.++..|...|.+|+++++....  +.+++.+    +...+++++. .++|+|+.++|...
T Consensus       115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~  192 (271)
T 1nyt_A          115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI  192 (271)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGG
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCC
Confidence            4678999999999999999999999999999999986532  2223322    2223444444 58999999998643

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=97.89  E-value=3.2e-05  Score=72.50  Aligned_cols=65  Identities=20%  Similarity=0.215  Sum_probs=48.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCH-H-HHHhcC---------ccc--cChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSV-E-DAAKLN---------IAS--LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~-~-~a~~~g---------v~~--~~l~ell~~aDvV~l~~P~t  163 (333)
                      ++|+|||.|.||..+|..|...|  .+|..||+.... + .+.+.+         +..  .++ +.+++||+|++++|..
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~   80 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNI   80 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCc
Confidence            58999999999999999998878  699999996522 1 111111         222  255 6789999999999953


Q ss_pred             h
Q psy6348         164 P  164 (333)
Q Consensus       164 ~  164 (333)
                      .
T Consensus        81 ~   81 (309)
T 1hyh_A           81 K   81 (309)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.88  E-value=9.4e-05  Score=61.91  Aligned_cols=100  Identities=14%  Similarity=0.067  Sum_probs=73.2

Q ss_pred             CCEEEEEec----ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          98 GKTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        98 gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      -++|+|||.    |++|..+++.|+..|++|+..+|...    .-.|+... +++|+....|++++++|. +....++. 
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~----~i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~-   95 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE-   95 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-
T ss_pred             CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCC----eECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-
Confidence            579999999    79999999999999999888877531    12466654 799999899999999995 55566653 


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +..+ ...+.+++..  |.  .++++.++.++..+.
T Consensus        96 ~~~~-~gi~~i~~~~--g~--~~~~l~~~a~~~Gi~  126 (144)
T 2d59_A           96 QAIK-KGAKVVWFQY--NT--YNREASKKADEAGLI  126 (144)
T ss_dssp             HHHH-HTCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             HHHH-cCCCEEEECC--Cc--hHHHHHHHHHHcCCE
Confidence            3333 3334565543  32  377888888877665

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.85  E-value=4.7e-05  Score=63.57  Aligned_cols=103  Identities=22%  Similarity=0.261  Sum_probs=73.8

Q ss_pred             CCCEEEEEec----ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          97 YGKTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        97 ~gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .-++++|||.    |++|..+++.++..|++|+..+|....+  +-.|+... +++|+-...|++++++|. +....++.
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~--~i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~   88 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGE--ELFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP   88 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTS--EETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccC--cCCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH
Confidence            3579999999    8999999999999999988887752111  11466654 799998899999999995 56666663


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                       +..+ ...+.++++.+..    ++++.+..++..++
T Consensus        89 -~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir  119 (140)
T 1iuk_A           89 -EVLA-LRPGLVWLQSGIR----HPEFEKALKEAGIP  119 (140)
T ss_dssp             -HHHH-HCCSCEEECTTCC----CHHHHHHHHHTTCC
T ss_pred             -HHHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCE
Confidence             3333 3334566654332    57788888876665

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.85  E-value=4.8e-05  Score=71.55  Aligned_cols=67  Identities=19%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCccccChhhhcc--CCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIASLGLEDIWP--LADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~~~~l~ell~--~aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+.+++.+... +++++ ++|+....  +.+++.|+.+.+++++++  +.|+|++++|....
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h   76 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPTDTH   76 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCchhH
Confidence            4899999999999999999875 78877 58886532  334556777558999998  89999999995443

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.85  E-value=3.2e-05  Score=73.29  Aligned_cols=87  Identities=14%  Similarity=0.143  Sum_probs=63.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhh-C-CCEEEEEcCCCCH--HHHHhc-----CccccChhhhccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQA-F-GMKVIGFDPMVSV--EDAAKL-----NIASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~-~-G~~V~~~d~~~~~--~~a~~~-----gv~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      ..++++|||.|.+|+.+++.+.. . .-+|.+||++...  +.++++     .+...++++++ ++|+|++++|..   .
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~---~  199 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSR---K  199 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCS---S
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCC---C
Confidence            46799999999999999998876 3 3589999997632  122222     23334788999 999999999953   2


Q ss_pred             hhccHHHHhccCCCcEEEEccCC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg  190 (333)
                      .++..   +.+++|..+++++..
T Consensus       200 pv~~~---~~l~~G~~V~~ig~~  219 (322)
T 1omo_A          200 PVVKA---EWVEEGTHINAIGAD  219 (322)
T ss_dssp             CCBCG---GGCCTTCEEEECSCC
T ss_pred             ceecH---HHcCCCeEEEECCCC
Confidence            44432   457899999988544

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.84  E-value=4.6e-05  Score=63.59  Aligned_cols=88  Identities=14%  Similarity=0.053  Sum_probs=58.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHH---hcCcccc--------Chhhh-ccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAA---KLNIASL--------GLEDI-WPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~---~~gv~~~--------~l~el-l~~aDvV~l~~P~t  163 (333)
                      .+++.|+|+|.+|+.+++.|...|++|++.|+....  +...   ..|+...        .++++ +.++|+|+++++..
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d   82 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDND   82 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCH
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCCh
Confidence            568999999999999999999999999999986421  1111   2244322        24444 78999999999854


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      +  .++.-......+.+...+|..
T Consensus        83 ~--~n~~~~~~a~~~~~~~~ii~~  104 (153)
T 1id1_A           83 A--DNAFVVLSAKDMSSDVKTVLA  104 (153)
T ss_dssp             H--HHHHHHHHHHHHTSSSCEEEE
T ss_pred             H--HHHHHHHHHHHHCCCCEEEEE
Confidence            3  333334445555444445543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=97.82  E-value=0.00011  Score=77.16  Aligned_cols=132  Identities=18%  Similarity=0.221  Sum_probs=93.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------c----C-------ccccChhhhccCCCE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------L----N-------IASLGLEDIWPLADY  155 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~----g-------v~~~~l~ell~~aDv  155 (333)
                      ++|||||.|.||+.+|..+...|++|+.+|+.... +.+.+           .    .       +...+-.+.+++||+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl  396 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL  396 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence            69999999999999999999999999999986521 11110           0    0       011222345789999


Q ss_pred             EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEE
Q psy6348         156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVI  235 (333)
Q Consensus       156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi  235 (333)
                      |+=++|.+.+.+.-+-++.-+.++++++|-..+.+  +....|.++++ ..=+-.++..|.+-|.     -||.+   ||
T Consensus       397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfnP~~~-----m~LVE---vi  465 (742)
T 3zwc_A          397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFSPAHV-----MRLLE---VI  465 (742)
T ss_dssp             EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCSSTTT-----CCEEE---EE
T ss_pred             EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccCCCCC-----CceEE---Ee
Confidence            99999999888887777777889999998876555  45566777764 3344578887764331     24554   67


Q ss_pred             EccCCC
Q psy6348         236 VTPHLG  241 (333)
Q Consensus       236 ~TPHi~  241 (333)
                      -+|+.+
T Consensus       466 ~g~~Ts  471 (742)
T 3zwc_A          466 PSRYSS  471 (742)
T ss_dssp             ECSSCC
T ss_pred             cCCCCC
Confidence            666643

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.82  E-value=4e-05  Score=71.37  Aligned_cols=105  Identities=14%  Similarity=0.181  Sum_probs=69.7

Q ss_pred             CCEEEEEecChHHHH-HHHHHhh-CCCEEE-EEcCCCCH--HHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          98 GKTLAVLGLGRIGRE-VALRMQA-FGMKVI-GFDPMVSV--EDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        98 gktvGIIGlG~IG~~-vA~~l~~-~G~~V~-~~d~~~~~--~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      -.++||||+|.||+. +++.++. -+.++. ++|+....  +.+++.|+.. .++++++.+.|+|++++|........  
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~--   83 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEII--   83 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHH--
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHH--
Confidence            368999999999997 8888876 478887 68886532  2344567653 48999999999999999954332222  


Q ss_pred             HHHHhccCCCc-EEEE-ccCCcccchHhHHhhhhcCCc
Q psy6348         172 AEVLKKCKKGV-RVVN-VARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 ~~~~~~mk~ga-ilIN-~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      .   ..++.|. +++. -..-.+-+.++|.++.++..+
T Consensus        84 ~---~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g~  118 (308)
T 3uuw_A           84 K---ILLNLGVHVYVDKPLASTVSQGEELIELSTKKNL  118 (308)
T ss_dssp             H---HHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHTC
T ss_pred             H---HHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcCC
Confidence            2   2344454 3433 233445556667777766544

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.79  E-value=7.1e-05  Score=70.22  Aligned_cols=105  Identities=14%  Similarity=0.178  Sum_probs=67.4

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEEEEcCCCCH--HHHHhcCcc--ccChhhhc-cCCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVIGFDPMVSV--EDAAKLNIA--SLGLEDIW-PLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~~~d~~~~~--~~a~~~gv~--~~~l~ell-~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .++||||+|.||+. +++.++.. +.+++++|+....  +.+++.|+.  +.+..+++ .++|+|++++|...... +  
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~-~--   79 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST-L--   79 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH-H--
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHH-H--
Confidence            37999999999994 88888765 7788899986532  234556765  34555666 78999999999433221 1  


Q ss_pred             HHHHhccCCCc-EEEEc-cCCcccchHhHHhhhhcCCce
Q psy6348         172 AEVLKKCKKGV-RVVNV-ARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       172 ~~~~~~mk~ga-ilIN~-aRg~~vd~~aL~~aL~~g~i~  208 (333)
                        ..+.++.|. +++.- .--.+-+.++|.++.++..+.
T Consensus        80 --~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           80 --AAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             --HHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence              122344554 55542 223344556677777766554

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=97.78  E-value=5.8e-06  Score=76.93  Aligned_cols=91  Identities=12%  Similarity=0.065  Sum_probs=63.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcc---c-cChhhhc-cCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIA---S-LGLEDIW-PLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~---~-~~l~ell-~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ++|+|||.|.||..+|..|...|.+|.+|++.... +.....|..   . .+..+.+ ..+|+|++++|.. .+..++ +
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l-~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVI-P   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHG-G
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHH-H
Confidence            58999999999999999999889999999987421 111122321   1 1334444 8899999999943 455554 3


Q ss_pred             HHHhccCCCcEEEEccCCc
Q psy6348         173 EVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~  191 (333)
                      +....+++++++|.+.-|=
T Consensus        81 ~l~~~l~~~~~iv~~~nGi   99 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNGY   99 (294)
T ss_dssp             GHHHHEEEEEEEEECCSSC
T ss_pred             HHHHhhCCCCEEEEeccCc
Confidence            3445577888999987774

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.76  E-value=6.4e-05  Score=71.11  Aligned_cols=67  Identities=21%  Similarity=0.321  Sum_probs=52.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCccc-cChhhhcc--CCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIAS-LGLEDIWP--LADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~~-~~l~ell~--~aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+.+++.++.. +++++ ++|+....  +.+++.|+.. .++++++.  +.|+|++++|....
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h   78 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTH   78 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhh
Confidence            4899999999999999998876 77877 58886532  2344557654 48999998  89999999995443

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.75  E-value=8.9e-05  Score=69.38  Aligned_cols=105  Identities=17%  Similarity=0.178  Sum_probs=69.8

Q ss_pred             CEEEEEecChHHHH-HHHHHhh-CCCEEE-EEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQA-FGMKVI-GFDPMVSV--EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~-~G~~V~-~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .++||||+|.||+. +++.+.. -++++. ++|+....  +.+++.|+... +++++..++|+|++++|.......    
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~----   81 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDV----   81 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHH----
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHH----
Confidence            48999999999997 8888765 477876 78987643  23455576543 677776789999999995433222    


Q ss_pred             HHHhccCCCc-EEEEc-cCCcccchHhHHhhhhcCCce
Q psy6348         173 EVLKKCKKGV-RVVNV-ARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       173 ~~~~~mk~ga-ilIN~-aRg~~vd~~aL~~aL~~g~i~  208 (333)
                       ....++.|. +++.- .-..+-+.++|.++.++..+.
T Consensus        82 -~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           82 -VSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             -HHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             -HHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence             223355665 55542 233455666788887766554

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=97.75  E-value=9.9e-05  Score=69.65  Aligned_cols=110  Identities=20%  Similarity=0.207  Sum_probs=66.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCH-HH-HHhc--------C--ccccChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSV-ED-AAKL--------N--IASLGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~-~~-a~~~--------g--v~~~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ++|+|||.|.||..+|..|...|+  +|..||+.... +. ....        .  +...+ .+.+++||+|++++|...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            489999999999999999988888  99999986421 11 1111        1  11123 356789999999999533


Q ss_pred             h---hH--------hhccHHH---HhccCCCcEEEEccCCcccchHhHHhhh--hcCCceEE
Q psy6348         165 Q---TK--------NLINAEV---LKKCKKGVRVVNVARGGIVDENALLDSL--KCGHCGGA  210 (333)
Q Consensus       165 ~---t~--------~li~~~~---~~~mk~gailIN~aRg~~vd~~aL~~aL--~~g~i~ga  210 (333)
                      .   ++        .++ ++.   +....+++++|+++-+.-+....+.+..  ...++.|.
T Consensus        80 ~~g~~r~dl~~~n~~i~-~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVM-KEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CSSCCHHHHHHHHHHHH-HHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             CCCCCHHHHHHHHHHHH-HHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            1   01        111 222   2222578899888654433333333322  34466554

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.73  E-value=0.00014  Score=68.38  Aligned_cols=110  Identities=17%  Similarity=0.248  Sum_probs=67.5

Q ss_pred             CEEEEEecChHHHHHHHHHhh--CCCEEEEEcCCCCHHHHHh----cC---------ccc-cChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQA--FGMKVIGFDPMVSVEDAAK----LN---------IAS-LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~--~G~~V~~~d~~~~~~~a~~----~g---------v~~-~~l~ell~~aDvV~l~~P~  162 (333)
                      ++|+|||.|.||..+|..|..  +|.+|..||+.........    ..         +.. .++++ +++||+|++++|.
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            479999999999999999876  5899999999764322211    11         122 25666 8999999999974


Q ss_pred             chhhHhh-----c--c----HH---HHhccCCCcEEEEccCCcccch--HhHHhh--hhcCCceEEEe
Q psy6348         163 IPQTKNL-----I--N----AE---VLKKCKKGVRVVNVARGGIVDE--NALLDS--LKCGHCGGAAL  212 (333)
Q Consensus       163 t~~t~~l-----i--~----~~---~~~~mk~gailIN~aRg~~vd~--~aL~~a--L~~g~i~gaal  212 (333)
                      . ...+.     +  +    ++   .+....+++.+|+++-  .++.  ..+.+.  +...++.|.+.
T Consensus        80 p-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN--P~~~~~~~~~~~~~~~~~rviG~gt  144 (310)
T 1guz_A           80 P-RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN--PLDIMTHVAWVRSGLPKERVIGMAG  144 (310)
T ss_dssp             C-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS--SHHHHHHHHHHHHCSCGGGEEEECH
T ss_pred             C-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC--chHHHHHHHHHhcCCChHHEEECCC
Confidence            2 11111     0  0    11   2222357888888844  3333  223222  44556766643

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.73  E-value=6.2e-05  Score=69.85  Aligned_cols=93  Identities=19%  Similarity=0.186  Sum_probs=61.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcC----------ccccChhhhccCCCEEEEecC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLN----------IASLGLEDIWPLADYITVHTP  161 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~g----------v~~~~l~ell~~aDvV~l~~P  161 (333)
                      .++.||++.|+|.|.||+++|..|...| +|+++++....  +.+++.+          +...++.+.+.++|+|+.++|
T Consensus       124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag  202 (287)
T 1nvt_A          124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP  202 (287)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred             CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCC
Confidence            4578999999999999999999999999 99999986422  1112211          111234667788999999998


Q ss_pred             CchhhH--h-hccHHHHhccCCCcEEEEccC
Q psy6348         162 LIPQTK--N-LINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       162 ~t~~t~--~-li~~~~~~~mk~gailIN~aR  189 (333)
                      ......  . .+.  ..+.++++.+++|+.-
T Consensus       203 ~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y  231 (287)
T 1nvt_A          203 IGMYPNIDVEPIV--KAEKLREDMVVMDLIY  231 (287)
T ss_dssp             TTCTTCCSSCCSS--CSTTCCSSSEEEECCC
T ss_pred             CCCCCCCCCCCCC--CHHHcCCCCEEEEeee
Confidence            543210  0 010  1234566667777654

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.72  E-value=7.5e-05  Score=72.72  Aligned_cols=90  Identities=18%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             EEEEEecChHHHHHHHHHhhCC--------CEEEEEcCCCC---H---HHHHhc--------Ccc------c-cChhhhc
Q psy6348         100 TLAVLGLGRIGREVALRMQAFG--------MKVIGFDPMVS---V---EDAAKL--------NIA------S-LGLEDIW  150 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G--------~~V~~~d~~~~---~---~~a~~~--------gv~------~-~~l~ell  150 (333)
                      ||+|||.|.+|.++|..|...|        .+|..|.+...   .   +.....        |+.      . .++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            8999999999999999987654        35888876532   1   111111        221      1 2688999


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      ++||+|++++| +...+.++ ++....++++..+|+++.|=
T Consensus       116 ~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEecccc
Confidence            99999999999 45555554 44556788999999999884

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=97.72  E-value=6.8e-05  Score=70.36  Aligned_cols=112  Identities=10%  Similarity=0.079  Sum_probs=69.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHH--HHhc--C------cccc-ChhhhccCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVED--AAKL--N------IASL-GLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~--g------v~~~-~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ++|+|||.|.||..+|..+...|+  +|..||.......  +.++  .      .... +-.+.+++||+|+++++....
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~a~~~aDvVIi~~~~~~~   80 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGGHSELADAQVVILTAGANQK   80 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEECGGGGTTCSEEEECC-----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECCHHHhCCCCEEEEcCCCCCC
Confidence            489999999999999999999898  9999998642111  1211  1      1111 224678999999999953221


Q ss_pred             -----------hHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEE
Q psy6348         166 -----------TKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGA  210 (333)
Q Consensus       166 -----------t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ga  210 (333)
                                 +..++.  .+.+....+++++|+++-+.-+....+.+.....++.|.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           81 PGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence                       111111  122233368999999866554555556666566677665

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.71  E-value=7.4e-05  Score=70.07  Aligned_cols=103  Identities=16%  Similarity=0.137  Sum_probs=64.4

Q ss_pred             EEEEEecChHHHHH-HHHHhhCCCEEE-EEcCCCCH--HHHHhcCcc--ccChhhhcc--CCCEEEEecCCchhhHhhcc
Q psy6348         100 TLAVLGLGRIGREV-ALRMQAFGMKVI-GFDPMVSV--EDAAKLNIA--SLGLEDIWP--LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus       100 tvGIIGlG~IG~~v-A~~l~~~G~~V~-~~d~~~~~--~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~t~~t~~li~  171 (333)
                      ++||||+|.||+.+ ++.+...|++++ ++|+....  +.+++.|+.  +.+++++++  ++|+|++++|.......   
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~---   78 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQ---   78 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHH---
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHH---
Confidence            79999999999998 777766788876 67886522  234456764  347899987  59999999994332221   


Q ss_pred             HHHHhccCCCc-EEEEc-cCCcccchHhHHhhhhcCCc
Q psy6348         172 AEVLKKCKKGV-RVVNV-ARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 ~~~~~~mk~ga-ilIN~-aRg~~vd~~aL~~aL~~g~i  207 (333)
                        ..+.++.|. +++.- .....-+.++|.++.++..+
T Consensus        79 --~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~  114 (332)
T 2glx_A           79 --TLAAIRAGKHVLCEKPLAMTLEDAREMVVAAREAGV  114 (332)
T ss_dssp             --HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHTC
T ss_pred             --HHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCC
Confidence              223345565 44432 12233444556665554433

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.69  E-value=5.8e-05  Score=70.40  Aligned_cols=66  Identities=20%  Similarity=0.208  Sum_probs=50.4

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc--Ccccc---ChhhhccCCCEEEEecCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL--NIASL---GLEDIWPLADYITVHTPL  162 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~--gv~~~---~l~ell~~aDvV~l~~P~  162 (333)
                      +.++.|+++.|+|.|.+|+.++..|...|. +|.+++|+.  +.++++  .+...   ++++ + ++|+|+.++|.
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~--~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~  188 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNP--EKTSEIYGEFKVISYDELSN-L-KGDVIINCTPK  188 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCH--HHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSST
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHhcCcccHHHHHh-c-cCCEEEECCcc
Confidence            456789999999999999999999999999 999999865  333332  22222   3444 4 89999999985

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=97.67  E-value=5.2e-05  Score=72.07  Aligned_cols=66  Identities=20%  Similarity=0.202  Sum_probs=51.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--CCEEE-EEcCCCCH--HHHHhcCcccc-Chhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--GMKVI-GFDPMVSV--EDAAKLNIASL-GLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+..++.++..  +++++ ++|+....  +.+++.|+... +++++++  +.|+|++++|...
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   87 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGL   87 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHH
Confidence            5899999999999999999876  78866 67886532  23455677543 8999987  8999999999543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=97.65  E-value=0.00023  Score=67.57  Aligned_cols=111  Identities=17%  Similarity=0.261  Sum_probs=67.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHH-----Hh----c----Cccc-cChhhhccCCCEEEEec--C
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDA-----AK----L----NIAS-LGLEDIWPLADYITVHT--P  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a-----~~----~----gv~~-~~l~ell~~aDvV~l~~--P  161 (333)
                      ++|+|||.|.||..+|..+...|+ +|..||........     .+    .    .+.. .++ +.+++||+|++++  |
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            699999999999999999998898 99999987633211     01    0    1222 256 7789999999998  4


Q ss_pred             Cchh---------hHhhc---cHHHHhccCCCcEEEEccCCcccchHhHHhhh--hcCCceEEE
Q psy6348         162 LIPQ---------TKNLI---NAEVLKKCKKGVRVVNVARGGIVDENALLDSL--KCGHCGGAA  211 (333)
Q Consensus       162 ~t~~---------t~~li---~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL--~~g~i~gaa  211 (333)
                      ..+.         +..++   .++. ....|++++|+++-..-+....+.+.-  ...++.|.+
T Consensus        94 ~k~g~tr~dl~~~n~~i~~~i~~~i-~~~~p~a~viv~tNP~~~~t~~~~~~~~~~~~rviG~~  156 (328)
T 2hjr_A           94 RKPNMTRSDLLTVNAKIVGSVAENV-GKYCPNAFVICITNPLDAMVYYFKEKSGIPANKVCGMS  156 (328)
T ss_dssp             CCTTCCSGGGHHHHHHHHHHHHHHH-HHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEESC
T ss_pred             CCCCCchhhHHhhhHHHHHHHHHHH-HHHCCCeEEEEecCchHHHHHHHHHhcCCChhhEEEeC
Confidence            3221         11111   1222 223488999887553222222222221  355666663

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=97.65  E-value=0.00033  Score=67.96  Aligned_cols=123  Identities=18%  Similarity=0.166  Sum_probs=90.2

Q ss_pred             CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-
Q psy6348          44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM-  122 (333)
Q Consensus        44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-  122 (333)
                      ..|+|+|+.   -..+|=.+++-+++..|                  ..|..+...++.|+|.|.+|..+|+.+.+.|. 
T Consensus       159 ~~Ipvf~DD---iqGTasV~lAal~~A~~------------------i~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~  217 (388)
T 1vl6_A          159 MNIPVFHDD---QQGTAVVVSAAFLNALK------------------LTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVK  217 (388)
T ss_dssp             CSSCEEEHH---HHHHHHHHHHHHHHHHH------------------HHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             cCcceeccc---cccHHHHHHHHHHHHHH------------------HhCCCCCCcEEEEECCCHHHHHHHHHHHhCCCC
Confidence            468999952   22334445555554444                  13457889999999999999999999999999 


Q ss_pred             EEEEEcCC----CCH----------HHHHhcCc--cccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEE
Q psy6348         123 KVIGFDPM----VSV----------EDAAKLNI--ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       123 ~V~~~d~~----~~~----------~~a~~~gv--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN  186 (333)
                      +|+.+|+.    ...          ..+.+...  ...+|.|.++++|+++-+.-     -+++.++.++.|+++++++.
T Consensus       218 ~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa-----p~l~t~emVk~Ma~~pIIfa  292 (388)
T 1vl6_A          218 NVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR-----GNILKPEWIKKMSRKPVIFA  292 (388)
T ss_dssp             EEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC-----SSCSCHHHHTTSCSSCEEEE
T ss_pred             eEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC-----CCccCHHHHHhcCCCCEEEE
Confidence            89999987    311          12222221  12379999999999887731     38999999999999999999


Q ss_pred             ccCCcc
Q psy6348         187 VARGGI  192 (333)
Q Consensus       187 ~aRg~~  192 (333)
                      +|+...
T Consensus       293 lSNPt~  298 (388)
T 1vl6_A          293 LANPVP  298 (388)
T ss_dssp             CCSSSC
T ss_pred             cCCCCC
Confidence            998653

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.65  E-value=6.5e-05  Score=71.41  Aligned_cols=67  Identities=16%  Similarity=0.209  Sum_probs=52.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCccc-cChhhhc--cCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIAS-LGLEDIW--PLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~~-~~l~ell--~~aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+.+++.++.. +++++ ++|+....  +.+++.|+.. .++++++  .+.|+|++++|....
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h   79 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKH   79 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSH
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHH
Confidence            4899999999999999999887 88866 67886532  2334567754 4899999  679999999996544

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=97.64  E-value=0.00011  Score=70.10  Aligned_cols=68  Identities=13%  Similarity=0.059  Sum_probs=51.7

Q ss_pred             CCCEEEEEecChHHH-HHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCcccc-Chhhhcc--CCCEEEEecCCch
Q psy6348          97 YGKTLAVLGLGRIGR-EVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIASL-GLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        97 ~gktvGIIGlG~IG~-~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .-.++||||+|.||+ .++..++.. +++|. ++|+....  +.+++.|+... +++++++  +.|+|++++|...
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~  101 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVL  101 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGG
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHH
Confidence            346899999999999 788888876 78876 57886522  23455677554 8999986  5899999999544

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.64  E-value=0.0001  Score=69.08  Aligned_cols=101  Identities=16%  Similarity=0.102  Sum_probs=62.7

Q ss_pred             CEEEEEecChHHHHHHHHHhh-CCCEEE-EEcCCCCHHHHHhcCcccc---ChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-FGMKVI-GFDPMVSVEDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~-~~d~~~~~~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      .++||||+|+||+.+++.++. -++++. ++|+....  ++..|+.+.   ++.+. .++|+|++|+|.....     +.
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~--~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~h~-----~~   81 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAE--VPFELQPFRVVSDIEQL-ESVDVALVCSPSREVE-----RT   81 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------CCTTSCEESSGGGS-SSCCEEEECSCHHHHH-----HH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHH--HHHcCCCcCCHHHHHhC-CCCCEEEECCCchhhH-----HH
Confidence            489999999999999999886 478887 58886532  233665432   44444 6899999999843222     22


Q ss_pred             HHhccCCCcEEEEccC--C-cccchHhHHhhhhcCCc
Q psy6348         174 VLKKCKKGVRVVNVAR--G-GIVDENALLDSLKCGHC  207 (333)
Q Consensus       174 ~~~~mk~gailIN~aR--g-~~vd~~aL~~aL~~g~i  207 (333)
                      ..+.++.|.-++...-  + ...+.+.|.++.++..+
T Consensus        82 ~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~  118 (304)
T 3bio_A           82 ALEILKKGICTADSFDIHDGILALRRSLGDAAGKSGA  118 (304)
T ss_dssp             HHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCCC
Confidence            3344667777776432  1 23334566776666443

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=97.62  E-value=8.3e-05  Score=70.17  Aligned_cols=92  Identities=14%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCc----c-------c-cChhhhccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNI----A-------S-LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv----~-------~-~~l~ell~~aDvV~l~~P~t  163 (333)
                      .+||+|||.|.||.++|..++..|.  +|..||...........++    .       . .+..+.+++||+|+++.|..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            3699999999999999998877665  8999998642222211111    0       0 13457799999999997743


Q ss_pred             hh-----------hHhhcc--HHHHhccCCCcEEEEccC
Q psy6348         164 PQ-----------TKNLIN--AEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       164 ~~-----------t~~li~--~~~~~~mk~gailIN~aR  189 (333)
                      ..           +..++.  .+.+....|++++++++-
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            21           111110  112233358889999854

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=97.61  E-value=0.00013  Score=64.55  Aligned_cols=87  Identities=23%  Similarity=0.183  Sum_probs=58.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-HHhcCcccc--------Chhhh-ccCCCEEEEecCCchhhH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-AAKLNIASL--------GLEDI-WPLADYITVHTPLIPQTK  167 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~gv~~~--------~l~el-l~~aDvV~l~~P~t~~t~  167 (333)
                      +++.|+|+|.+|+.+|+.|...|++|+++|+.... +. ....|+...        .++++ +.++|+|++++|....  
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~--   78 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV--   78 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH--
Confidence            36899999999999999999999999999986532 22 233454321        23443 7899999999986433  


Q ss_pred             hhccHHHHhccCCCcEEEEc
Q psy6348         168 NLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~  187 (333)
                      +++-......+.+...+|-.
T Consensus        79 n~~~~~~a~~~~~~~~iia~   98 (218)
T 3l4b_C           79 NLFIAQLVMKDFGVKRVVSL   98 (218)
T ss_dssp             HHHHHHHHHHTSCCCEEEEC
T ss_pred             HHHHHHHHHHHcCCCeEEEE
Confidence            33323333444444555543

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.61  E-value=0.00016  Score=68.22  Aligned_cols=105  Identities=16%  Similarity=0.189  Sum_probs=66.8

Q ss_pred             CEEEEEecChHHHHHHHHHh-h-CCCEEE-EEcCCCCH--HHHHhcCc-c-ccChhhhcc--CCCEEEEecCCchhhHhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQ-A-FGMKVI-GFDPMVSV--EDAAKLNI-A-SLGLEDIWP--LADYITVHTPLIPQTKNL  169 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~gv-~-~~~l~ell~--~aDvV~l~~P~t~~t~~l  169 (333)
                      .+|||||+|.||+.+++.++ . -|++++ ++|+....  ..+++.|+ . +.+++++++  ++|+|++++|......  
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~--   86 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPE--   86 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHH--
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHH--
Confidence            48999999999999999887 5 478854 67886532  22345576 3 347899986  6999999999433222  


Q ss_pred             ccHHHHhccCCCcEE-EEc-cCCcccchHhHHhhhhcC-Cce
Q psy6348         170 INAEVLKKCKKGVRV-VNV-ARGGIVDENALLDSLKCG-HCG  208 (333)
Q Consensus       170 i~~~~~~~mk~gail-IN~-aRg~~vd~~aL~~aL~~g-~i~  208 (333)
                         ...+.++.|..+ +.- .....-+.++|.++.++. .+.
T Consensus        87 ---~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~  125 (346)
T 3cea_A           87 ---MTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQI  125 (346)
T ss_dssp             ---HHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSC
T ss_pred             ---HHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCe
Confidence               222335566533 321 112333445577777665 543

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.61  E-value=0.00018  Score=68.43  Aligned_cols=114  Identities=18%  Similarity=0.216  Sum_probs=70.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHH--H---h----cC----ccc-cChhhhccCCCEEEEec--
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDA--A---K----LN----IAS-LGLEDIWPLADYITVHT--  160 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~---~----~g----v~~-~~l~ell~~aDvV~l~~--  160 (333)
                      .++|+|||.|.+|..+|..|...|+ +|..||........  .   +    .+    +.. .++++.+++||+|++++  
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~   88 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL   88 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence            3689999999999999999998888 99999987632111  1   1    11    122 36777899999999998  


Q ss_pred             CCchhh------Hhh-------ccHH---HHhccCCCcEEEEccCCcccchHhHHhhh--hcCCceEEE
Q psy6348         161 PLIPQT------KNL-------INAE---VLKKCKKGVRVVNVARGGIVDENALLDSL--KCGHCGGAA  211 (333)
Q Consensus       161 P~t~~t------~~l-------i~~~---~~~~mk~gailIN~aRg~~vd~~aL~~aL--~~g~i~gaa  211 (333)
                      |..+..      +--       +-++   .+....|++++|+.+-..=+....+.+.-  ...++.|.+
T Consensus        89 p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~~~t~~~~~~~~~~~~rviG~g  157 (331)
T 1pzg_A           89 TKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLDCMVKVMCEASGVPTNMICGMA  157 (331)
T ss_dssp             SSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             CCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchHHHHHHHHHhcCCChhcEEecc
Confidence            654321      111       0111   22333588999988554333333322221  333565553

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=97.61  E-value=8.4e-05  Score=71.02  Aligned_cols=66  Identities=23%  Similarity=0.282  Sum_probs=51.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH-HHHHhcCcccc-Chhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV-EDAAKLNIASL-GLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~-~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+..++.++.. ++++. ++|+.... +.+++.|+... ++++++.  +.|+|++++|...
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDS   77 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            4899999999999999998876 78876 46886532 33455677544 8999987  7999999999544

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.60  E-value=0.00012  Score=68.97  Aligned_cols=67  Identities=13%  Similarity=0.039  Sum_probs=52.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCcc--ccChhhhcc--CCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIA--SLGLEDIWP--LADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+.+++.++.. +++|+ ++|+....  +.+++.|+.  +.++++++.  +.|+|++++|....
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   80 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGH   80 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGH
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHH
Confidence            5899999999999999999874 67877 57887632  334556763  348999997  79999999995443

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.60  E-value=6.7e-05  Score=73.05  Aligned_cols=83  Identities=22%  Similarity=0.258  Sum_probs=68.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCC---EEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGM---KVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ...++.|||. |++|+.-++.++++|.   .|.++|...     ...|-.   + +.++++|+|+.++......-.++.+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~-----~~~g~~---~-~~i~~aDivIn~vlig~~aP~Lvt~  283 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKE-----TSRGGP---F-DEIPQADIFINCIYLSKPIAPFTNM  283 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHH-----HTTCSC---C-THHHHSSEEEECCCCCSSCCCSCCH
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccc-----cccCCc---h-hhHhhCCEEEECcCcCCCCCcccCH
Confidence            4568999999 9999999999999998   899999743     111322   2 3456999999999986666678999


Q ss_pred             HHHhcc-CCCcEEEEcc
Q psy6348         173 EVLKKC-KKGVRVVNVA  188 (333)
Q Consensus       173 ~~~~~m-k~gailIN~a  188 (333)
                      +.++.| |+|++|||+|
T Consensus       284 e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          284 EKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             HHHCCTTCCCCEEEETT
T ss_pred             HHHhcCcCCCeEEEEEe
Confidence            999999 9999999995

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=97.58  E-value=0.0003  Score=66.61  Aligned_cols=61  Identities=21%  Similarity=0.286  Sum_probs=46.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHH-----Hh----c--C--ccc-cChhhhccCCCEEEEec
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDA-----AK----L--N--IAS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a-----~~----~--g--v~~-~~l~ell~~aDvV~l~~  160 (333)
                      ++|+|||.|.||..+|..+...|+ +|..||........     .+    .  .  +.. .++ +.+++||+|++++
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeC
Confidence            589999999999999999998888 99999987642111     11    1  1  122 256 7789999999998

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.58  E-value=0.00013  Score=71.46  Aligned_cols=91  Identities=20%  Similarity=0.269  Sum_probs=65.1

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-----C---hhhh-ccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-----G---LEDI-WPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-----~---l~el-l~~aDvV~l~~P~t~~t~  167 (333)
                      +.+|.|+|+|++|+.+|+.|+..|++|++.|.... .+.+++.|+..+     +   |+++ +.+||+|++++|....+ 
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n-   82 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTN-   82 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHH-
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHH-
Confidence            45799999999999999999999999999998763 244556676432     1   3344 68899999999864433 


Q ss_pred             hhccHHHHhccCCCcEEEEccCC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg  190 (333)
                       +.--.....+.+...+|--++.
T Consensus        83 -~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           83 -LQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             -HHHHHHHHHHCTTCEEEEEESS
T ss_pred             -HHHHHHHHHhCCCCeEEEEECC
Confidence             3334455667777666655443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.58  E-value=0.00012  Score=68.22  Aligned_cols=69  Identities=26%  Similarity=0.356  Sum_probs=52.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHH--HHHhcC-------cccc---ChhhhccCCCEEEEec
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVE--DAAKLN-------IASL---GLEDIWPLADYITVHT  160 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~g-------v~~~---~l~ell~~aDvV~l~~  160 (333)
                      .++.||++.|+|.|.+|+.++..|...|. +|++++|.....  .+++.+       +...   ++++.++++|+|+.++
T Consensus       123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT  202 (283)
T 3jyo_A          123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT  202 (283)
T ss_dssp             TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred             cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence            46789999999999999999999999999 799999975321  222221       1111   5667788899999999


Q ss_pred             CC
Q psy6348         161 PL  162 (333)
Q Consensus       161 P~  162 (333)
                      |.
T Consensus       203 p~  204 (283)
T 3jyo_A          203 PM  204 (283)
T ss_dssp             ST
T ss_pred             CC
Confidence            84

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=97.54  E-value=0.0001  Score=69.70  Aligned_cols=66  Identities=21%  Similarity=0.193  Sum_probs=51.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCcc--ccChhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIA--SLGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+.+++.+... +++++ ++|+....  +.++..|+.  +.+++++++  ++|+|++++|...
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   76 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNT   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcc
Confidence            3899999999999999998775 67876 57886532  234556763  348999998  8999999999543

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.53  E-value=0.00034  Score=62.99  Aligned_cols=90  Identities=26%  Similarity=0.188  Sum_probs=63.6

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH---HHhcCcccc--C-hhhhccCCCEEEEecCCchhh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED---AAKLNIASL--G-LEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~---a~~~gv~~~--~-l~ell~~aDvV~l~~P~t~~t  166 (333)
                      ..++.|+++.|||.|.+|..-++.|...|.+|++++|....+.   +.+.++++.  + .++.+..+|+|+.++.. ++.
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d-~~~  104 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATND-QAV  104 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCC-THH
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCC-HHH
Confidence            3579999999999999999999999999999999999876532   222234432  2 24567889999987653 332


Q ss_pred             HhhccHHHHhccCCCcEEEEcc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~a  188 (333)
                          +.......+ -.++||++
T Consensus       105 ----N~~I~~~ak-~gi~VNvv  121 (223)
T 3dfz_A          105 ----NKFVKQHIK-NDQLVNMA  121 (223)
T ss_dssp             ----HHHHHHHSC-TTCEEEC-
T ss_pred             ----HHHHHHHHh-CCCEEEEe
Confidence                333333345 45778873

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.52  E-value=0.00018  Score=67.91  Aligned_cols=101  Identities=12%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      .+|||||+|+||+.+++.+... +++++ ++|+..... .. .|+.. .++++++.++|+|++++|.....     +...
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~-~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~-----~~~~   76 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLD-TK-TPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQA   76 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCS-SS-SCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHh-hc-CCCceeCCHHHHhcCCCEEEEcCCcHHHH-----HHHH
Confidence            3799999999999999998876 67754 678764331 11 45543 37888888899999999854322     2233


Q ss_pred             hccCCCcEEEEccCCcc--cch-HhHHhhhhcCC
Q psy6348         176 KKCKKGVRVVNVARGGI--VDE-NALLDSLKCGH  206 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~--vd~-~aL~~aL~~g~  206 (333)
                      ..++.|.-+|...-..+  -+. +.|.++.+++.
T Consensus        77 ~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           77 PKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            45677877776544432  222 45666666554

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.52  E-value=0.00028  Score=66.75  Aligned_cols=70  Identities=17%  Similarity=0.257  Sum_probs=51.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHHhc--------C--ccccC------hhhhccCCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAAKL--------N--IASLG------LEDIWPLAD  154 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~--------g--v~~~~------l~ell~~aD  154 (333)
                      +.++.||++.|+|.|.+|+.++..|...|. +|++++|..+ .+.++++        +  +...+      +.+.+.++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            457899999999999999999999999999 8999999732 3333221        2  11222      345567899


Q ss_pred             EEEEecCC
Q psy6348         155 YITVHTPL  162 (333)
Q Consensus       155 vV~l~~P~  162 (333)
                      +|+.++|.
T Consensus       229 iIINaTp~  236 (315)
T 3tnl_A          229 IFTNATGV  236 (315)
T ss_dssp             EEEECSST
T ss_pred             EEEECccC
Confidence            99998884

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=97.50  E-value=0.0002  Score=67.32  Aligned_cols=66  Identities=17%  Similarity=0.078  Sum_probs=49.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCcc--ccChhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIA--SLGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+.+++.++.. +.++. ++|+....  +.+++.|+.  +.++++++.  +.|+|++++|...
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   79 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQD   79 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGG
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence            5899999999999999888765 56665 56886632  344556764  348999998  7999999999543

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=97.48  E-value=0.00028  Score=67.46  Aligned_cols=103  Identities=14%  Similarity=0.141  Sum_probs=62.7

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEE-EEcCCCCHHHHHhc-Cccc-cChhhhcc--CCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVI-GFDPMVSVEDAAKL-NIAS-LGLEDIWP--LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-gv~~-~~l~ell~--~aDvV~l~~P~t~~t~~li~  171 (333)
                      .++||||+|.||+. .+..++.. +++|. ++|+...... +.. ++.. .++++++.  +.|+|++++|........  
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~--   84 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVK-RDLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLA--   84 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-HHCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHH--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHH-hhCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHH--
Confidence            48999999999997 67777765 78876 5687543222 233 4443 48999998  799999999954432222  


Q ss_pred             HHHHhccCCCcEEEEcc--CCcccchHhHHhhhhcCCc
Q psy6348         172 AEVLKKCKKGVRVVNVA--RGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 ~~~~~~mk~gailIN~a--Rg~~vd~~aL~~aL~~g~i  207 (333)
                         .+.++.|.-++.--  --.+-+.++|.++.++..+
T Consensus        85 ---~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~  119 (364)
T 3e82_A           85 ---RLALNAGKHVVVDKPFTLDMQEARELIALAEEKQR  119 (364)
T ss_dssp             ---HHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred             ---HHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHhCC
Confidence               22334444343321  2233444556665555443

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.46  E-value=9.3e-05  Score=69.17  Aligned_cols=102  Identities=15%  Similarity=0.205  Sum_probs=64.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCHHHHHhcC--cc-ccChhhhcc--CCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSVEDAAKLN--IA-SLGLEDIWP--LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~~~a~~~g--v~-~~~l~ell~--~aDvV~l~~P~t~~t~~li~  171 (333)
                      .++||||+|.||+.+++.+... +.+++ ++|+..  +.+++..  +. +.+++++++  ++|+|++++|.......   
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~--~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~---   85 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNP--DNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPATHAEI---   85 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCH--HHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGGHHHH---
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCH--HHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHHHHHH---
Confidence            4899999999999999999875 67754 788853  3332221  32 237899985  79999999994332221   


Q ss_pred             HHHHhccCCCc-EEEEc-cCCcccchHhHHhhhhcCCc
Q psy6348         172 AEVLKKCKKGV-RVVNV-ARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 ~~~~~~mk~ga-ilIN~-aRg~~vd~~aL~~aL~~g~i  207 (333)
                        ..+.++.|. +++.- .--.+-+.++|.++.++..+
T Consensus        86 --~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~  121 (315)
T 3c1a_A           86 --TLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKATGV  121 (315)
T ss_dssp             --HHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHHCC
T ss_pred             --HHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHcCC
Confidence              223355664 45542 22344455667777665444

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.44  E-value=0.0003  Score=68.32  Aligned_cols=123  Identities=20%  Similarity=0.102  Sum_probs=93.0

Q ss_pred             CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-
Q psy6348          44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM-  122 (333)
Q Consensus        44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-  122 (333)
                      ..|+|+|+.   -.-+|=-+++-+++..|                  ..|..+...+|.|+|.|..|..+|+.+.++|. 
T Consensus       155 ~~ipvf~DD---iqGTa~V~lAall~al~------------------l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~  213 (398)
T 2a9f_A          155 CHIPVFHDD---QHGTAIVVLAAIFNSLK------------------LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGAT  213 (398)
T ss_dssp             CSSCEEEHH---HHHHHHHHHHHHHHHHH------------------TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCC
T ss_pred             CCcceecch---hhhHHHHHHHHHHHHHH------------------HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCC
Confidence            369999952   34556667777776666                  24567888999999999999999999999999 


Q ss_pred             EEEEEcCCC--CH-----------HHHHhcCc--cccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         123 KVIGFDPMV--SV-----------EDAAKLNI--ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       123 ~V~~~d~~~--~~-----------~~a~~~gv--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      +|+.+|+.-  ..           ..+.....  ...+|+|+++.+|+++=.-     +-+++.++.++.|+++++++.+
T Consensus       214 ~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~Ma~~pIIfal  288 (398)
T 2a9f_A          214 KVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGADIFIGVS-----APGVLKAEWISKMAARPVIFAM  288 (398)
T ss_dssp             EEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHTSCSSCEEEEC
T ss_pred             eEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHhhCCCCEEEEC
Confidence            999999762  00           11111111  1236999999999887652     3689999999999999999999


Q ss_pred             cCCcc
Q psy6348         188 ARGGI  192 (333)
Q Consensus       188 aRg~~  192 (333)
                      |+...
T Consensus       289 sNPt~  293 (398)
T 2a9f_A          289 ANPIP  293 (398)
T ss_dssp             CSSSC
T ss_pred             CCCCc
Confidence            98653

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=97.44  E-value=0.00027  Score=64.87  Aligned_cols=98  Identities=13%  Similarity=0.199  Sum_probs=70.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEE-EEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKV-IGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V-~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      +-.+|+++|+|.||+.+++.  . ++++ .+|+ ..    ..++|+... ++++++.++|+|+-|.+.     .-+.+..
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k----~gelgv~a~~d~d~lla~pD~VVe~A~~-----~av~e~~   77 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RI----SKDIPGVVRLDEFQVPSDVSTVVECASP-----EAVKEYS   77 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SS----CCCCSSSEECSSCCCCTTCCEEEECSCH-----HHHHHHH
T ss_pred             ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-cc----ccccCceeeCCHHHHhhCCCEEEECCCH-----HHHHHHH
Confidence            45799999999999999988  4 7876 4566 22    112366543 799999999999988741     1233345


Q ss_pred             HhccCCCcEEEEccCCcccch---HhHHhhhhcCCc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDE---NALLDSLKCGHC  207 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~---~aL~~aL~~g~i  207 (333)
                      ...++.|.-+|-+|-|.+.|.   +.|.++.++|.-
T Consensus        78 ~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~  113 (253)
T 1j5p_A           78 LQILKNPVNYIIISTSAFADEVFRERFFSELKNSPA  113 (253)
T ss_dssp             HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSC
T ss_pred             HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCC
Confidence            566899999999998888876   445555555543

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=97.43  E-value=0.00054  Score=62.45  Aligned_cols=80  Identities=15%  Similarity=0.175  Sum_probs=56.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEE-EcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIG-FDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      .+|+|+|+|+||+.+++.+...+.++.+ +|+....    ..|+... ++++++ ++|+++-.++ .+.+..     .+.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~~-----~~~   72 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----TTPYQQYQHIADVK-GADVAIDFSN-PNLLFP-----LLD   72 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CCSCBCSCTTTCT-TCSEEEECSC-HHHHHH-----HHT
T ss_pred             eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----cCCCceeCCHHHHh-CCCEEEEeCC-hHHHHH-----HHH
Confidence            5899999999999999999877667665 7886542    3566554 788888 9999884443 122222     223


Q ss_pred             ccCCCcEEEEccCC
Q psy6348         177 KCKKGVRVVNVARG  190 (333)
Q Consensus       177 ~mk~gailIN~aRg  190 (333)
                       ++.|.-+|....|
T Consensus        73 -l~~g~~vVigTTG   85 (243)
T 3qy9_A           73 -EDFHLPLVVATTG   85 (243)
T ss_dssp             -SCCCCCEEECCCS
T ss_pred             -HhcCCceEeCCCC
Confidence             7788777766666

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=97.42  E-value=0.00082  Score=62.64  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=59.7

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHH--HH--hcCc------cc--cChhhhccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVED--AA--KLNI------AS--LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~--~~gv------~~--~~l~ell~~aDvV~l~~P~t  163 (333)
                      .++|+|||.|.||..+|..|...|+  +|..+|+......  +.  ..+.      ..  .+-.+.++.||+|+++++..
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~~   86 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPR   86 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCCC
Confidence            4699999999999999999998898  9999998642211  11  1222      11  11235678999999999532


Q ss_pred             hh---hH--------hh---ccHHHHhccCCCcEEEEccCCc
Q psy6348         164 PQ---TK--------NL---INAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       164 ~~---t~--------~l---i~~~~~~~mk~gailIN~aRg~  191 (333)
                      ..   ++        .+   +-+. +....+++++|+++-|-
T Consensus        87 ~~~g~~r~~~~~~n~~~~~~~~~~-i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           87 QKPGQSRLELVGATVNILKAIMPN-LVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHH-HHHHCTTSEEEECCSSH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHH-HHHhCCCceEEEecCch
Confidence            11   10        11   1112 22236888999886653

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.42  E-value=0.00031  Score=62.60  Aligned_cols=86  Identities=10%  Similarity=0.038  Sum_probs=59.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc--------Chhhh-ccCCCEEEEecCCchhhH
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL--------GLEDI-WPLADYITVHTPLIPQTK  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~--------~l~el-l~~aDvV~l~~P~t~~t~  167 (333)
                      .+++.|+|+|.+|+.+|+.|...|+ |+++|+.... +... .|+...        .++++ +.++|.|++++|...  .
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~--~   84 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--E   84 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH--H
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH--H
Confidence            4689999999999999999999999 9999987533 2233 554432        23334 789999999998543  3


Q ss_pred             hhccHHHHhccCCCcEEEEc
Q psy6348         168 NLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~  187 (333)
                      ++.-......+.++..+|--
T Consensus        85 n~~~~~~a~~~~~~~~iia~  104 (234)
T 2aef_A           85 TIHCILGIRKIDESVRIIAE  104 (234)
T ss_dssp             HHHHHHHHHHHCSSSEEEEE
T ss_pred             HHHHHHHHHHHCCCCeEEEE
Confidence            34434555667777455443

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=97.42  E-value=0.00021  Score=67.51  Aligned_cols=67  Identities=16%  Similarity=0.174  Sum_probs=50.5

Q ss_pred             CEEEEEecChHHHHHHHHHh-h-CCCEEE-EEcCCCCH--HHHHhcC--ccc-cChhhhccC--CCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQ-A-FGMKVI-GFDPMVSV--EDAAKLN--IAS-LGLEDIWPL--ADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~g--v~~-~~l~ell~~--aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+..++.++ . -++++. ++|+....  +.+++.|  ... .++++++++  .|+|++++|....
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   79 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAH   79 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGH
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhH
Confidence            38999999999999999988 5 477876 57886532  2345567  333 489999876  9999999995443

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.38  E-value=0.00041  Score=68.44  Aligned_cols=109  Identities=22%  Similarity=0.219  Sum_probs=79.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC---EEEEEc----CC--CCHH-H---HHh--------cCc--cccChhhh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM---KVIGFD----PM--VSVE-D---AAK--------LNI--ASLGLEDI  149 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~---~V~~~d----~~--~~~~-~---a~~--------~gv--~~~~l~el  149 (333)
                      |..+.++++.|+|.|..|+.++..|...|.   +|+.+|    +.  .... .   ...        .+.  ...++.+.
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            456889999999999999999999999998   799999    76  2111 1   111        111  12368888


Q ss_pred             ccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         150 WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       150 l~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                      ++++|+|+.++|..+   +++.++.++.|+++.++++++..  ..+.-+.+|.+.|.
T Consensus       261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~  312 (439)
T 2dvm_A          261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGA  312 (439)
T ss_dssp             HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTC
T ss_pred             hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCC
Confidence            999999999988522   55666677889999999999544  35666666666664

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.38  E-value=0.00023  Score=67.22  Aligned_cols=70  Identities=23%  Similarity=0.344  Sum_probs=51.2

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHHh----c----Cc--cccCh------hhhccCCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAAK----L----NI--ASLGL------EDIWPLAD  154 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~----~----gv--~~~~l------~ell~~aD  154 (333)
                      +.++.||++.|+|.|.+|+.++..|...|. +|++++|..+ .+.+++    .    +.  ...++      .+.+.++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            457899999999999999999999999998 8999999732 222221    1    21  12222      34567888


Q ss_pred             EEEEecCC
Q psy6348         155 YITVHTPL  162 (333)
Q Consensus       155 vV~l~~P~  162 (333)
                      +|+.++|.
T Consensus       223 iIINaTp~  230 (312)
T 3t4e_A          223 ILTNGTKV  230 (312)
T ss_dssp             EEEECSST
T ss_pred             EEEECCcC
Confidence            88888884

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=97.37  E-value=0.0004  Score=65.24  Aligned_cols=89  Identities=16%  Similarity=0.218  Sum_probs=57.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHH--Hhc---------C--ccc-cChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDA--AKL---------N--IAS-LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~~~---------g--v~~-~~l~ell~~aDvV~l~~P~t  163 (333)
                      ++|+|||.|.||..+|..+...|+ +|..+|........  .++         .  +.. .+. +.+++||+|+++++..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999998887 99999986532211  110         1  112 245 6789999999998532


Q ss_pred             hhhHhh-----------ccHH---HHhccCCCcEEEEccC
Q psy6348         164 PQTKNL-----------INAE---VLKKCKKGVRVVNVAR  189 (333)
Q Consensus       164 ~~t~~l-----------i~~~---~~~~mk~gailIN~aR  189 (333)
                       ...++           +-++   .+....|++++++++-
T Consensus        82 -~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           82 -RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             -CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence             11111           1112   2233358899999754

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=97.37  E-value=0.00054  Score=65.17  Aligned_cols=105  Identities=14%  Similarity=0.151  Sum_probs=67.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCc----c-ccChhhhcc--CCCEEEEecCCchhhH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNI----A-SLGLEDIWP--LADYITVHTPLIPQTK  167 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv----~-~~~l~ell~--~aDvV~l~~P~t~~t~  167 (333)
                      .++||||+|.||+.+++.+... +++++ ++|+....  +.+++.|+    . +.+++++++  +.|+|++++|..... 
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~-   85 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHV-   85 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHH-
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHH-
Confidence            4899999999999999988875 66764 67876522  23445563    2 247899986  599999999943322 


Q ss_pred             hhccHHHHhccCCCcEEE-Ec-cCCcccchHhHHhhhhcCCce
Q psy6348         168 NLINAEVLKKCKKGVRVV-NV-ARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       168 ~li~~~~~~~mk~gailI-N~-aRg~~vd~~aL~~aL~~g~i~  208 (333)
                          +-..+.++.|.-++ .- -.-.+-+.++|.++.++..+.
T Consensus        86 ----~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           86 ----EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             ----HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ----HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence                22223456665444 32 122334456677777766554

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.37  E-value=0.0016  Score=61.08  Aligned_cols=129  Identities=17%  Similarity=0.143  Sum_probs=91.6

Q ss_pred             hhHhhCCcEEEEC-CCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHH
Q psy6348          39 TAATRKGVLVLNA-PGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVA  114 (333)
Q Consensus        39 ~aa~~~gI~V~n~-p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA  114 (333)
                      +.|...+|+|+|. -|....++-  +++=++.+.++                  .| .+.|+||++||=   +++..+++
T Consensus       110 ~la~~~~vPVINaG~g~~~HPtQ--~LaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~~rva~Sl~  168 (299)
T 1pg5_A          110 FASEISDIPVINAGDGKHEHPTQ--AVIDIYTINKH------------------FN-TIDGLVFALLGDLKYARTVNSLL  168 (299)
T ss_dssp             HHHHHCSSCEEEEEETTTBCHHH--HHHHHHHHHHH------------------HS-CSTTCEEEEEECCSSCHHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCcCcHH--HHHHHHHHHHH------------------hC-CcCCcEEEEECCCCCCchHHHHH
Confidence            3455678999998 666666654  33334433331                  11 378999999998   59999999


Q ss_pred             HHHhhC-CCEEEEEcCCC---CHHHHHhcCccc---cChhhhccCCCEEEEecCCch------hh-----HhhccHHHHh
Q psy6348         115 LRMQAF-GMKVIGFDPMV---SVEDAAKLNIAS---LGLEDIWPLADYITVHTPLIP------QT-----KNLINAEVLK  176 (333)
Q Consensus       115 ~~l~~~-G~~V~~~d~~~---~~~~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~------~t-----~~li~~~~~~  176 (333)
                      ..+..+ |++|....|..   .....++.|..+   .+++|+++++|+|..-.=-.+      +.     .-.++.+.++
T Consensus       169 ~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~  248 (299)
T 1pg5_A          169 RILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLAN  248 (299)
T ss_dssp             HHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHH
T ss_pred             HHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccccccCHHHHHHhhcCcccCHHHHH
Confidence            999999 99999998853   223234556543   379999999999988654321      11     1345788889


Q ss_pred             ccCCCcEEEEcc
Q psy6348         177 KCKKGVRVVNVA  188 (333)
Q Consensus       177 ~mk~gailIN~a  188 (333)
                      .+|++++|..|.
T Consensus       249 ~a~~~ai~mH~l  260 (299)
T 1pg5_A          249 KMKKDSIILHPL  260 (299)
T ss_dssp             TSCTTCEEECCS
T ss_pred             hcCCCCEEECCC
Confidence            999999999984

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.37  E-value=0.00066  Score=63.82  Aligned_cols=104  Identities=11%  Similarity=0.072  Sum_probs=65.6

Q ss_pred             CEEEEEecChHHH-HHHHHHhhCCCEE-EEEcCCCC--HHHHHhc-Cccc-cChhhhcc--CCCEEEEecCCchhhHhhc
Q psy6348          99 KTLAVLGLGRIGR-EVALRMQAFGMKV-IGFDPMVS--VEDAAKL-NIAS-LGLEDIWP--LADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        99 ktvGIIGlG~IG~-~vA~~l~~~G~~V-~~~d~~~~--~~~a~~~-gv~~-~~l~ell~--~aDvV~l~~P~t~~t~~li  170 (333)
                      .++||||+|.+|. .++..++..|+++ .++|+...  .+.++++ +... .+++++++  +.|+|++++|.......  
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~--   82 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAEL--   82 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHH--
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHH--
Confidence            4899999999996 6777777778996 46788763  3344555 4443 48999987  69999999995433222  


Q ss_pred             cHHHHhccCCCc-EEEEc-cCCcccchHhHHhhhhcCCc
Q psy6348         171 NAEVLKKCKKGV-RVVNV-ARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       171 ~~~~~~~mk~ga-ilIN~-aRg~~vd~~aL~~aL~~g~i  207 (333)
                         ..+.++.|. +++.- ..-.+-+.++|.++.++..+
T Consensus        83 ---~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~  118 (336)
T 2p2s_A           83 ---ALRTLDAGKDFFTAKPPLTTLEQLDAVQRRVAETGR  118 (336)
T ss_dssp             ---HHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence               223344554 44442 22233444556666655443

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=97.36  E-value=0.00033  Score=66.78  Aligned_cols=67  Identities=15%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             CCEEEEEecChHHHHHHHHHh-h-CCCEEE-EEcCCCCH--HHHHhcC--ccc-cChhhhcc--CCCEEEEecCCch
Q psy6348          98 GKTLAVLGLGRIGREVALRMQ-A-FGMKVI-GFDPMVSV--EDAAKLN--IAS-LGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~-~-~G~~V~-~~d~~~~~--~~a~~~g--v~~-~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      -.++||||+|.||+..++.+. . -+++++ ++|+....  +.+++.|  ... .++++++.  +.|+|++++|...
T Consensus        23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   99 (357)
T 3ec7_A           23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEA   99 (357)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGG
T ss_pred             eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHH
Confidence            458999999999999999887 4 478876 58987744  3345567  333 48999987  5899999999544

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.34  E-value=0.00043  Score=68.46  Aligned_cols=102  Identities=22%  Similarity=0.253  Sum_probs=71.5

Q ss_pred             ccccCCCEEEEEecC----------hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhc-Ccccc-ChhhhccCCCEEEEec
Q psy6348          93 GTELYGKTLAVLGLG----------RIGREVALRMQAFGMKVIGFDPMVSVEDAAKL-NIASL-GLEDIWPLADYITVHT  160 (333)
Q Consensus        93 g~~l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-gv~~~-~l~ell~~aDvV~l~~  160 (333)
                      +..+.|++|+|+|+-          .-...+++.|...|.+|.+|||....+..+.+ ++.++ ++++.++++|.|++++
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t  396 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIVT  396 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEECS
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEee
Confidence            446889999999997          56788999999999999999998743322333 56555 6789999999999998


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhH
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL  198 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL  198 (333)
                      +- ++-+.+=-....+.|+. .+++|. |+ +.+.+.+
T Consensus       397 ~~-~~f~~~d~~~~~~~~~~-~~i~D~-r~-~~~~~~~  430 (446)
T 4a7p_A          397 EW-DAFRALDLTRIKNSLKS-PVLVDL-RN-IYPPAEL  430 (446)
T ss_dssp             CC-TTTTSCCHHHHHTTBSS-CBEECS-SC-CSCHHHH
T ss_pred             CC-HHhhcCCHHHHHHhcCC-CEEEEC-CC-CCCHHHH
Confidence            73 33333322334455654 678885 54 3444443

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.33  E-value=0.00033  Score=68.71  Aligned_cols=103  Identities=14%  Similarity=0.165  Sum_probs=64.2

Q ss_pred             CEEEEEecChHHH-HHHHHHhhC-CCEE-EEEcCCCCH--HHHHhcCcc------ccChhhhcc--CCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGR-EVALRMQAF-GMKV-IGFDPMVSV--EDAAKLNIA------SLGLEDIWP--LADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~-~vA~~l~~~-G~~V-~~~d~~~~~--~~a~~~gv~------~~~l~ell~--~aDvV~l~~P~t~~  165 (333)
                      .+|||||+|.||+ .+++.+... ++++ .++|+....  +.+++.|+.      +.++++++.  +.|+|++++|....
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h  163 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLH  163 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGH
T ss_pred             eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhH
Confidence            4899999999997 899888765 5776 467886522  234455664      348999987  79999999995433


Q ss_pred             hHhhccHHHHhccCCCc-EEEEc-cCCcccchHhHHhhhhcCC
Q psy6348         166 TKNLINAEVLKKCKKGV-RVVNV-ARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       166 t~~li~~~~~~~mk~ga-ilIN~-aRg~~vd~~aL~~aL~~g~  206 (333)
                      ...     ....++.|. +++.- .--.+-+.++|.++.++..
T Consensus       164 ~~~-----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g  201 (433)
T 1h6d_A          164 AEF-----AIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAAN  201 (433)
T ss_dssp             HHH-----HHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHT
T ss_pred             HHH-----HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhC
Confidence            222     223345554 44432 1223334445666555433

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.32  E-value=0.0034  Score=59.10  Aligned_cols=128  Identities=18%  Similarity=0.140  Sum_probs=89.2

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHHH
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALRM  117 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l  117 (333)
                      .|.-.+|+|+|.-+....++-  +++=++.+.++                  .| .+.|+||++||=|  ++..+++..+
T Consensus       111 lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~  169 (307)
T 2i6u_A          111 MASVATVPVINALSDEFHPCQ--VLADLQTIAER------------------KG-ALRGLRLSYFGDGANNMAHSLLLGG  169 (307)
T ss_dssp             HHHHCSSCEEESCCSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHhhCCCCEEcCCCCCcCccH--HHHHHHHHHHH------------------hC-CcCCeEEEEECCCCcCcHHHHHHHH
Confidence            445568999998765555654  34444443331                  11 4789999999986  9999999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH---H----HhcCc--cc-cChhhhccCCCEEEEecCC-------chh-----hHhhccH
Q psy6348         118 QAFGMKVIGFDPMV---SVED---A----AKLNI--AS-LGLEDIWPLADYITVHTPL-------IPQ-----TKNLINA  172 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~---a----~~~gv--~~-~~l~ell~~aDvV~l~~P~-------t~~-----t~~li~~  172 (333)
                      ..+|++|....|..   ..+.   +    ++.|.  +. .+++|.++++|+|..-+=.       .++     ..-.++.
T Consensus       170 ~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~  249 (307)
T 2i6u_A          170 VTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNS  249 (307)
T ss_dssp             HHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCH
T ss_pred             HHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHhhcCCCH
Confidence            99999999998854   2211   1    24563  33 3799999999999984320       011     1234588


Q ss_pred             HHHhccCCCcEEEEcc
Q psy6348         173 EVLKKCKKGVRVVNVA  188 (333)
Q Consensus       173 ~~~~~mk~gailIN~a  188 (333)
                      +.++.+|++++|..|.
T Consensus       250 ~~l~~a~~~ai~mH~l  265 (307)
T 2i6u_A          250 RLLALADSDAIVLHCL  265 (307)
T ss_dssp             HHHHHSCTTCEEEECS
T ss_pred             HHHhhcCCCcEEECCC
Confidence            8889999999999984

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.29  E-value=0.0028  Score=59.46  Aligned_cols=128  Identities=16%  Similarity=0.015  Sum_probs=89.1

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHHh
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRMQ  118 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~  118 (333)
                      .|...+|+|+|.-+....++-  +++=++.+.++                  .| .+.|+||++||= +++..+++..+.
T Consensus       117 la~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~gl~ia~vGD~~rva~Sl~~~~~  175 (301)
T 2ef0_A          117 LARHAKVPVVNALSDRAHPLQ--ALADLLTLKEV------------------FG-GLAGLEVAWVGDGNNVLNSLLEVAP  175 (301)
T ss_dssp             HHHHCSSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHHCCCCEEeCCCCccCchH--HHHHHHHHHHH------------------hC-CcCCcEEEEECCCchhHHHHHHHHH
Confidence            445568999998765555654  34444443331                  11 378999999997 899999999999


Q ss_pred             hCCCEEEEEcCCC---CHHHHHhcCccc-cChhhhccCCCEEEEecCCc------hhh------HhhccHHHHhccCCCc
Q psy6348         119 AFGMKVIGFDPMV---SVEDAAKLNIAS-LGLEDIWPLADYITVHTPLI------PQT------KNLINAEVLKKCKKGV  182 (333)
Q Consensus       119 ~~G~~V~~~d~~~---~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t------~~t------~~li~~~~~~~mk~ga  182 (333)
                      .+|++|....|..   ..+......++. .+++|.++++|+|..-.=..      ...      .-.++.+.++.+|+++
T Consensus       176 ~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~a  255 (301)
T 2ef0_A          176 LAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEG  255 (301)
T ss_dssp             HHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTC
T ss_pred             HcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCc
Confidence            9999999998854   222222223443 48999999999998843200      011      1345788899999999


Q ss_pred             EEEEcc
Q psy6348         183 RVVNVA  188 (333)
Q Consensus       183 ilIN~a  188 (333)
                      ++..|.
T Consensus       256 i~mHpl  261 (301)
T 2ef0_A          256 VFLHCL  261 (301)
T ss_dssp             EEEECS
T ss_pred             EEECCC
Confidence            999996

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=97.29  E-value=0.0016  Score=64.35  Aligned_cols=114  Identities=19%  Similarity=0.185  Sum_probs=77.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE--------cCCC-CHHH------------------HHhcCccccC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF--------DPMV-SVED------------------AAKLNIASLG  145 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~------------------a~~~gv~~~~  145 (333)
                      +.++.|||+.|=|+|++|+..|+.|...|.+|++.        |+.- +.+.                  +.+.|.++++
T Consensus       230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~  309 (450)
T 4fcc_A          230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE  309 (450)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred             CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence            45789999999999999999999999999999874        4432 2221                  1223444444


Q ss_pred             hhhhc-cCCCEEEEecCCchhhHhhccHHHHhccCCC--cEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         146 LEDIW-PLADYITVHTPLIPQTKNLINAEVLKKCKKG--VRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       146 l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk~g--ailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      -++++ .+||+.+-|.     +.+.|+.+....++.+  .++++.+-+..-.+ + .+.|.+..|. ++=|.
T Consensus       310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl-~~PD~  373 (450)
T 4fcc_A          310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVL-FAPGK  373 (450)
T ss_dssp             TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCE-EECHH
T ss_pred             CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCE-EEChH
Confidence            44544 4699988773     5678988888888753  46777776665433 3 3566666664 45454

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.28  E-value=0.0024  Score=60.83  Aligned_cols=129  Identities=16%  Similarity=0.149  Sum_probs=90.4

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHHH
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALRM  117 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l  117 (333)
                      .|.-.+|+|.|.-+....++-  +++=++.+.++                  .|..+.|++|++||=|  ++..+++..+
T Consensus       117 lA~~s~vPVINa~~~~~HPtQ--~LaDl~Ti~e~------------------~g~~l~gl~va~vGD~~~~va~Sl~~~~  176 (335)
T 1dxh_A          117 LAKFAGVPVFNGLTDEYHPTQ--MLADVLTMREH------------------SDKPLHDISYAYLGDARNNMGNSLLLIG  176 (335)
T ss_dssp             HHHHSSSCEEEEECSSCCHHH--HHHHHHHHHHT------------------CSSCGGGCEEEEESCCSSHHHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHH------------------cCCCcCCeEEEEecCCccchHHHHHHHH
Confidence            445678999998765555654  44444444332                  1225789999999996  9999999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH---H----HhcCc--cc-cChhhhccCCCEEEEecCC--------chh-----hHhhcc
Q psy6348         118 QAFGMKVIGFDPMV---SVED---A----AKLNI--AS-LGLEDIWPLADYITVHTPL--------IPQ-----TKNLIN  171 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~---a----~~~gv--~~-~~l~ell~~aDvV~l~~P~--------t~~-----t~~li~  171 (333)
                      ..+|++|....|..   ..+.   +    ++.|.  +. .+++|.++++|+|..-+=.        ..+     ..-.++
T Consensus       177 ~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~  256 (335)
T 1dxh_A          177 AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVN  256 (335)
T ss_dssp             HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBC
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeC
Confidence            99999999998753   2211   1    24563  33 3799999999999884320        011     113468


Q ss_pred             HHHHhcc-CCCcEEEEcc
Q psy6348         172 AEVLKKC-KKGVRVVNVA  188 (333)
Q Consensus       172 ~~~~~~m-k~gailIN~a  188 (333)
                      .+.++.+ |++++|..|.
T Consensus       257 ~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          257 MEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             HHHHHTTCCSSCEEEECS
T ss_pred             HHHHHhccCCCeEEECCC
Confidence            8899999 9999999994

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=97.28  E-value=0.00059  Score=64.41  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=68.2

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCH--HHHHhc--C------ccc-cChhhhccCCCEEEEecCCch
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSV--EDAAKL--N------IAS-LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~--~~a~~~--g------v~~-~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ..||+|||.|.+|..+|..+...|.  +|..||.....  ..+.++  +      +.. .+-.+.+++||+|+++.+...
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3689999999999999999988887  99999986422  112221  1      111 133567999999999987432


Q ss_pred             hhHhh------------cc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE--ec
Q psy6348         165 QTKNL------------IN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA--LD  213 (333)
Q Consensus       165 ~t~~l------------i~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa--lD  213 (333)
                       ..++            +.  .+.+....|++++|+++-.-=+....+.+.  +...++.|.+  ||
T Consensus        87 -k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           87 -KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             -CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence             1121            10  112233368999999744332333334333  3445777763  46

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=97.28  E-value=0.00029  Score=67.72  Aligned_cols=66  Identities=27%  Similarity=0.432  Sum_probs=48.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc----ccc---ChhhhccCCCEEEEe
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI----ASL---GLEDIWPLADYITVH  159 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv----~~~---~l~ell~~aDvV~l~  159 (333)
                      .-+.||||+|+|.|.+|+.+++.++.+|++|+++|++...........    .+.   .+.++++++|+|+..
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~   82 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYE   82 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEES
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeec
Confidence            457899999999999999999999999999999998652211110110    111   256788899998764

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.26  E-value=0.00081  Score=66.49  Aligned_cols=95  Identities=16%  Similarity=0.155  Sum_probs=67.7

Q ss_pred             ccccCCCEEEEEecCh----------HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC--cccc-ChhhhccCCCEEEEe
Q psy6348          93 GTELYGKTLAVLGLGR----------IGREVALRMQAFGMKVIGFDPMVSVEDAAKLN--IASL-GLEDIWPLADYITVH  159 (333)
Q Consensus        93 g~~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g--v~~~-~l~ell~~aDvV~l~  159 (333)
                      +..+.|++|+|+|+--          =...+++.|...|.+|.+|||....+....++  ++++ ++++.++.+|.|+++
T Consensus       313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~  392 (450)
T 3gg2_A          313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV  392 (450)
T ss_dssp             TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred             cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence            3457899999999842          45789999999999999999987543333344  4554 678999999999999


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      ++ .++-+.+=-....+.|+ +.+++|. |+
T Consensus       393 t~-~~~f~~~~~~~~~~~~~-~~~i~D~-r~  420 (450)
T 3gg2_A          393 TE-WKEFRMPDWSALSQAMA-ASLVIDG-RN  420 (450)
T ss_dssp             SC-CGGGSSCCHHHHHHHSS-SCEEEES-SC
T ss_pred             cC-CHHHhhcCHHHHHHhcC-CCEEEEC-CC
Confidence            87 34433332233445565 5688885 54

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.24  E-value=0.00079  Score=63.14  Aligned_cols=80  Identities=23%  Similarity=0.260  Sum_probs=65.9

Q ss_pred             CccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+.++.||++.|||-++ +|+.+|..|...+..|..+..+.            .++.+.+++||+|+.++..    .+++
T Consensus       173 ~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T------------~dl~~~~~~ADIvV~A~G~----p~~i  236 (303)
T 4b4u_A          173 NNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT------------QNLPELVKQADIIVGAVGK----AELI  236 (303)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHHTCSEEEECSCS----TTCB
T ss_pred             HCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC------------CCHHHHhhcCCeEEeccCC----CCcc
Confidence            35689999999999865 69999999999999999887642            2578889999999999853    4567


Q ss_pred             cHHHHhccCCCcEEEEccCC
Q psy6348         171 NAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg  190 (333)
                      ..+.   .|+|+++||++--
T Consensus       237 ~~d~---vk~GavVIDVGin  253 (303)
T 4b4u_A          237 QKDW---IKQGAVVVDAGFH  253 (303)
T ss_dssp             CGGG---SCTTCEEEECCCB
T ss_pred             cccc---ccCCCEEEEecee
Confidence            6654   6999999999753

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=97.21  E-value=0.0012  Score=62.33  Aligned_cols=113  Identities=14%  Similarity=0.125  Sum_probs=69.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHH--hc---------Cccc--cChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAA--KL---------NIAS--LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~--~~---------gv~~--~~l~ell~~aDvV~l~~P~t  163 (333)
                      ++|+|||.|.||..+|..+...|+  +|..||.........  ++         ....  .+..+.+++||+|+++.+..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            489999999999999999887777  999999876432211  11         1222  24678899999999997643


Q ss_pred             hh-----------hHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE
Q psy6348         164 PQ-----------TKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA  211 (333)
Q Consensus       164 ~~-----------t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa  211 (333)
                      ..           +..++.  .+.+....|++++++++-.-=+....+.+.  +...++.|.+
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~~g~p~~rviG~~  143 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPLDVMTYVAYEASGFPTNRVMGMA  143 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSHHHHHHHHHHHHTCCGGGEEECC
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCchhHHHHHHHHhcCCChHHEEeec
Confidence            11           111111  123344568899999985433333333332  2234566654

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=97.21  E-value=0.0012  Score=61.91  Aligned_cols=111  Identities=10%  Similarity=0.113  Sum_probs=66.2

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCC-HHHHH---hc---Cccc-cChhhhccCCCEEEEecCCc----
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVS-VEDAA---KL---NIAS-LGLEDIWPLADYITVHTPLI----  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~-~~~a~---~~---gv~~-~~l~ell~~aDvV~l~~P~t----  163 (333)
                      .+||+|||.|.||..+|..+...|+  +|..||.... ...+.   +.   .+.. .++ +.+++||+|+++....    
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~   92 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQ   92 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----C
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCC
Confidence            3799999999999999998887788  9999998652 11111   11   1222 256 6789999999997321    


Q ss_pred             ------hhhHhhc---cHHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEE
Q psy6348         164 ------PQTKNLI---NAEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGA  210 (333)
Q Consensus       164 ------~~t~~li---~~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~ga  210 (333)
                            ..+..++   -++.-+ ..|++++++++-.--+-...+.+.  +...++.|.
T Consensus        93 tR~dl~~~n~~i~~~i~~~i~~-~~p~a~iiv~sNP~~~~t~~~~~~~~~p~~rviG~  149 (303)
T 2i6t_A           93 SYLDVVQSNVDMFRALVPALGH-YSQHSVLLVASQPVEIMTYVTWKLSTFPANRVIGI  149 (303)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-hCCCeEEEEcCChHHHHHHHHHHhcCCCHHHeeCC
Confidence                  1111111   122223 348999999876433333333332  223466666

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=97.21  E-value=0.00031  Score=63.96  Aligned_cols=90  Identities=21%  Similarity=0.276  Sum_probs=64.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-------------------CHHH-H----Hhc--Ccc--c-
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-------------------SVED-A----AKL--NIA--S-  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~~~-a----~~~--gv~--~-  143 (333)
                      ..|.+++|.|||+|.+|+.+|+.|...|. ++..+|+..                   .+.. +    .+.  +++  . 
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  106 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIAITPV  106 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHCCCcEEEEE
Confidence            35889999999999999999999999998 899999865                   2211 1    111  121  1 


Q ss_pred             ---c---ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         144 ---L---GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       144 ---~---~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                         .   +++++++++|+|+.+++ +.+++.++++...+.   +..+|+.
T Consensus       107 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~  152 (249)
T 1jw9_B          107 NALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG  152 (249)
T ss_dssp             CSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred             eccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence               1   24567889999999997 577888887766543   3446665

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.18  E-value=0.00046  Score=64.96  Aligned_cols=66  Identities=18%  Similarity=0.116  Sum_probs=49.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC---CEEE-EEcCCCCH--HHHHhcCcc--ccChhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG---MKVI-GFDPMVSV--EDAAKLNIA--SLGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G---~~V~-~~d~~~~~--~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+..++.++..+   ++++ ++|+....  +.+++.|+.  +.++++++.  +.|+|++++|...
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   78 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQ   78 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGG
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHH
Confidence            48999999999999999998764   4555 47876522  334556763  348999997  6999999999543

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=97.17  E-value=0.0025  Score=60.39  Aligned_cols=114  Identities=15%  Similarity=0.122  Sum_probs=68.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHH----HhcC-------ccc-cChhhhccCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDA----AKLN-------IAS-LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a----~~~g-------v~~-~~l~ell~~aDvV~l~~P~  162 (333)
                      ..++|+|||.|.||..+|..+...|+  +|..||........    ...+       +.. .+..+.+++||+|+++.+.
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            35799999999999999999988787  99999985422111    1111       111 1335688999999999753


Q ss_pred             c--h-hhH-hhc--c----H---HHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEE
Q psy6348         163 I--P-QTK-NLI--N----A---EVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGA  210 (333)
Q Consensus       163 t--~-~t~-~li--~----~---~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~ga  210 (333)
                      .  + .++ .++  +    +   +.+....|++++++++-.-=+....+.+.  +...++.|.
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPvd~~t~~~~k~~g~p~~rviG~  146 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPVDILTYATWKFSGLPKERVIGS  146 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChHHHHHHHHHHhcCCCHHHEEee
Confidence            2  1 111 111  1    1   22334568899999975433333333333  223355553

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.16  E-value=0.00063  Score=63.38  Aligned_cols=104  Identities=18%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEE-EEcCCCCHHHHHhcCcccc-Chhhhcc--CCCEEEEecCCchhhHhhccH
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVI-GFDPMVSVEDAAKLNIASL-GLEDIWP--LADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~~t~~li~~  172 (333)
                      ..+|+|+|+ |++|+.+++.++..|++++ .+||....+  +..|+... +++++..  ..|++++++|. +.....+ .
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~--~~~G~~vy~sl~el~~~~~~D~viI~tP~-~~~~~~~-~   82 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT--THLGLPVFNTVREAVAATGATASVIYVPA-PFCKDSI-L   82 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCG-GGHHHHH-H
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc--eeCCeeccCCHHHHhhcCCCCEEEEecCH-HHHHHHH-H
Confidence            468999999 9999999999998899854 567753211  13566544 7999988  89999999994 3333333 2


Q ss_pred             HHHhccCCCc-EEEEccCCc-ccchHhHHhhhhcCCce
Q psy6348         173 EVLKKCKKGV-RVVNVARGG-IVDENALLDSLKCGHCG  208 (333)
Q Consensus       173 ~~~~~mk~ga-ilIN~aRg~-~vd~~aL~~aL~~g~i~  208 (333)
                      +..+   .|. .+|..+.|- .-+.+.|.++.++..+.
T Consensus        83 ea~~---~Gi~~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           83 EAID---AGIKLIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             HHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            3322   332 344455543 33455788888776654

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.16  E-value=0.00044  Score=68.14  Aligned_cols=112  Identities=19%  Similarity=0.209  Sum_probs=72.3

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC---H--HHHHhcCcccc---ChhhhccC-CCEEEEe--cCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS---V--EDAAKLNIASL---GLEDIWPL-ADYITVH--TPL  162 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~---~--~~a~~~gv~~~---~l~ell~~-aDvV~l~--~P~  162 (333)
                      .++.||++.|||+|..|.++|+.|+..|++|.++|....   .  +..++.|++..   ..++++.+ +|+|++.  +|.
T Consensus         5 ~~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~   84 (451)
T 3lk7_A            5 TTFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPY   84 (451)
T ss_dssp             CTTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCT
T ss_pred             hhcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCC
Confidence            357899999999999999999999999999999998542   1  34456687653   34456676 9999886  332


Q ss_pred             -chhhH-----h--hccH-HHHhccCCCcE-EEEccCCcccchHhHHhhhhcC
Q psy6348         163 -IPQTK-----N--LINA-EVLKKCKKGVR-VVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       163 -t~~t~-----~--li~~-~~~~~mk~gai-lIN~aRg~~vd~~aL~~aL~~g  205 (333)
                       ++...     +  ++++ +.+..+.+..+ -|--+.|+--...-+...|+..
T Consensus        85 ~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~  137 (451)
T 3lk7_A           85 NNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAG  137 (451)
T ss_dssp             TSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             CChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence             22211     1  3333 33333333333 3333457666666666667653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=97.16  E-value=0.0028  Score=59.90  Aligned_cols=115  Identities=18%  Similarity=0.170  Sum_probs=69.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHH--HHhc---------Cccc--cChhhhccCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVED--AAKL---------NIAS--LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~--a~~~---------gv~~--~~l~ell~~aDvV~l~~P~  162 (333)
                      ..++|+|||.|.||..+|..+...|+ +|..||.......  +.++         ....  .+-.+.+++||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            35799999999999999999987777 9999998764321  1111         1111  2335789999999999653


Q ss_pred             c--h-hhH--------hhcc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE
Q psy6348         163 I--P-QTK--------NLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA  211 (333)
Q Consensus       163 t--~-~t~--------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa  211 (333)
                      .  + .++        .++.  .+.+....|++++++++-.-=+....+.+.  +...++.|.+
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPvd~~t~~~~k~sg~p~~rviG~~  147 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPLDIMVNMLQKFSGVPDNKIVGMA  147 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEEEC
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHhcCCCHHHEEeec
Confidence            2  1 111        1111  112233458899999954322223333333  2234566655

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=97.15  E-value=0.00084  Score=63.41  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=67.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHH--HHhc--C------ccc-cChhhhccCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVED--AAKL--N------IAS-LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~--g------v~~-~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      .||+|||.|.+|..++..+...+.  ++..||.......  +.++  .      +.. .+..+.+++||+|+++.+... 
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~-   84 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ-   84 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC-
Confidence            699999999999999998887666  8999998542111  1111  1      111 145677999999999986432 


Q ss_pred             hHh------------hcc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEE
Q psy6348         166 TKN------------LIN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGA  210 (333)
Q Consensus       166 t~~------------li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~ga  210 (333)
                      ..+            ++.  .+.+....|++++++++-.--+....+.+.  +...++.|.
T Consensus        85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  145 (318)
T 1ez4_A           85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPVDILTYATWKFSGFPKERVIGS  145 (318)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEec
Confidence            121            111  122333478999999844333333344443  444466666

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.15  E-value=0.00049  Score=68.48  Aligned_cols=93  Identities=17%  Similarity=0.176  Sum_probs=58.2

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHhhC-CCEEEEEcCCCCH-HH-HHhcCccc--c------ChhhhccCCCEEEEe
Q psy6348          91 YTGTELYGKTLAVLGLGRIGREVALRMQAF-GMKVIGFDPMVSV-ED-AAKLNIAS--L------GLEDIWPLADYITVH  159 (333)
Q Consensus        91 ~~g~~l~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~-~~-a~~~gv~~--~------~l~ell~~aDvV~l~  159 (333)
                      ..+..+.++++.|+|.|.+|+.++..|... |.+|.+++|..+. +. +...++..  .      ++.++++++|+|+.+
T Consensus        16 ~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~   95 (467)
T 2axq_A           16 HIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL   95 (467)
T ss_dssp             -------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred             ccccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence            445678899999999999999999999887 7899999996532 11 12223321  1      355678899999999


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +|..... . +..   +.++.|..+++++
T Consensus        96 tp~~~~~-~-v~~---a~l~~g~~vvd~~  119 (467)
T 2axq_A           96 IPYTFHP-N-VVK---SAIRTKTDVVTSS  119 (467)
T ss_dssp             SCGGGHH-H-HHH---HHHHHTCEEEECS
T ss_pred             CchhhhH-H-HHH---HHHhcCCEEEEee
Confidence            9954221 1 111   2234566666654

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.14  E-value=0.0022  Score=60.25  Aligned_cols=126  Identities=15%  Similarity=0.159  Sum_probs=86.2

Q ss_pred             hHhhCCcEEEECC-CCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC---hHHHHHHH
Q psy6348          40 AATRKGVLVLNAP-GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG---RIGREVAL  115 (333)
Q Consensus        40 aa~~~gI~V~n~p-~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG---~IG~~vA~  115 (333)
                      .|...+|+|+|.- |....++-  +++=++.+.++                  .| .+.|+||++||=|   ++..+++.
T Consensus       109 la~~~~vPVINagdg~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~glkva~vGD~~~~rva~Sl~~  167 (304)
T 3r7f_A          109 LVSQVNIPILNAGDGCGQHPTQ--SLLDLMTIYEE------------------FN-TFKGLTVSIHGDIKHSRVARSNAE  167 (304)
T ss_dssp             HHHHCSSCEEESCCTTSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCTTCHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCcCcHH--HHHHHHHHHHH------------------hC-CCCCCEEEEEcCCCCcchHHHHHH
Confidence            3455789999995 45555553  33333333221                  12 3789999999975   79999999


Q ss_pred             HHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCch---------h--hHhhccHHHHhccCCCcE
Q psy6348         116 RMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIP---------Q--TKNLINAEVLKKCKKGVR  183 (333)
Q Consensus       116 ~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~---------~--t~~li~~~~~~~mk~gai  183 (333)
                      .+..+|++|....|.. .++ ....| ...+++|+++++|+|..-.--.+         +  ..-.++.+.++.+|++++
T Consensus       168 ~~~~~G~~v~~~~P~~~~~~-~~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai  245 (304)
T 3r7f_A          168 VLTRLGARVLFSGPSEWQDE-ENTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAI  245 (304)
T ss_dssp             HHHHTTCEEEEESCGGGSCT-TCSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCE
T ss_pred             HHHHcCCEEEEECCCccCcc-hhhcC-ccCCHHHHhCCCCEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCE
Confidence            9999999999988743 221 12233 23589999999999988532111         1  123468888999999999


Q ss_pred             EEEcc
Q psy6348         184 VVNVA  188 (333)
Q Consensus       184 lIN~a  188 (333)
                      |..|.
T Consensus       246 ~mHcl  250 (304)
T 3r7f_A          246 IMHPA  250 (304)
T ss_dssp             EECCS
T ss_pred             EECCC
Confidence            99984

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=97.14  E-value=0.0024  Score=60.74  Aligned_cols=130  Identities=14%  Similarity=0.118  Sum_probs=89.8

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHHH
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALRM  117 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l  117 (333)
                      .|.-.+|+|.|.-+....++-  +++=++.+.+++                 .|..+.|.+|++||=|  ++..+++..+
T Consensus       116 lA~~~~vPVINa~~~~~HPtQ--~LaDl~Ti~e~~-----------------~g~~l~gl~ia~vGD~~~~va~Sl~~~~  176 (333)
T 1duv_G          116 LAEYASVPVWNGLTNEFHPTQ--LLADLLTMQEHL-----------------PGKAFNEMTLVYAGDARNNMGNSMLEAA  176 (333)
T ss_dssp             HHHHHSSCEEESCCSSCCHHH--HHHHHHHHHHHS-----------------TTCCGGGCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHhCCCCeEcCCCCCCCchH--HHHHHHHHHHHh-----------------cCCCCCCcEEEEECCCccchHHHHHHHH
Confidence            344568999998765555654  344444443321                 1325789999999986  9999999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH-------HHhcCcc--c-cChhhhccCCCEEEEecCCc--------hh-----hHhhcc
Q psy6348         118 QAFGMKVIGFDPMV---SVED-------AAKLNIA--S-LGLEDIWPLADYITVHTPLI--------PQ-----TKNLIN  171 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~-------a~~~gv~--~-~~l~ell~~aDvV~l~~P~t--------~~-----t~~li~  171 (333)
                      ..+|++|....|..   ..+.       +++.|..  . .++++.++++|+|..-+=..        .+     ..-.++
T Consensus       177 ~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~  256 (333)
T 1duv_G          177 ALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVN  256 (333)
T ss_dssp             HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBC
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccC
Confidence            99999999998753   2211       1255633  2 37999999999999843200        11     113468


Q ss_pred             HHHHhcc-CCCcEEEEcc
Q psy6348         172 AEVLKKC-KKGVRVVNVA  188 (333)
Q Consensus       172 ~~~~~~m-k~gailIN~a  188 (333)
                      .+.++.+ |++++|..|.
T Consensus       257 ~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          257 SKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             HHHHHTTCCTTCEEEECS
T ss_pred             HHHHHhccCCCcEEECCC
Confidence            8899999 9999999994

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=97.13  E-value=0.0013  Score=61.93  Aligned_cols=113  Identities=13%  Similarity=0.110  Sum_probs=68.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHH--HHhc---------Cccc-cChhhhccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVED--AAKL---------NIAS-LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~---------gv~~-~~l~ell~~aDvV~l~~P~t  163 (333)
                      ..+|+|||.|.+|..+|..+...|.  +|..||.......  +..+         .+.. .+..+.+++||+|+++.+..
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~   85 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA   85 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence            4699999999999999998887674  8999997542111  1110         1111 14567799999999998643


Q ss_pred             hh---hH--------hhcc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEE
Q psy6348         164 PQ---TK--------NLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGA  210 (333)
Q Consensus       164 ~~---t~--------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~ga  210 (333)
                      ..   ++        .++.  .+.+....|++++|+++-.--+....+.+.  +...++.|.
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv~~~t~~~~k~~~~p~~rviG~  147 (317)
T 3d0o_A           86 QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPVDILAYATWKFSGLPKERVIGS  147 (317)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcHHHHHHHHHHHhCCCHHHEEec
Confidence            21   11        1111  122333478999999864333333344443  344467666

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.13  E-value=0.00075  Score=64.42  Aligned_cols=88  Identities=22%  Similarity=0.241  Sum_probs=63.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHH-hcCcccc----C---hhhhccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAA-KLNIASL----G---LEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~-~~gv~~~----~---l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .|++|.|+|.|.||...++.++.+|++|++.++... .+.+. ++|...+    +   +.++....|+|+-++.....  
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~--  264 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP--  264 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence            689999999999999999999999999999998653 34444 6675421    1   23344567888888764321  


Q ss_pred             hhccHHHHhccCCCcEEEEccC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aR  189 (333)
                         -...++.|+++..+|+++.
T Consensus       265 ---~~~~~~~l~~~G~iv~~g~  283 (366)
T 1yqd_A          265 ---LLPLFGLLKSHGKLILVGA  283 (366)
T ss_dssp             ---SHHHHHHEEEEEEEEECCC
T ss_pred             ---HHHHHHHHhcCCEEEEEcc
Confidence               1455677788888888764

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=97.12  E-value=0.0014  Score=60.51  Aligned_cols=65  Identities=23%  Similarity=0.195  Sum_probs=48.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLNIASL-GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t  163 (333)
                      .++++.|+|.|.+|+.++..|...|. +|++++|+...  +.+++.+..+. ++.  +.++|+|+.++|..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~g  186 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIG  186 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCC
Confidence            46899999999999999999999998 79999997532  23333444322 222  46899999999954

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.11  E-value=0.0014  Score=62.68  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=56.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcC----ccc---cChhhhccCCCEEEEecCCchhhH
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLN----IAS---LGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g----v~~---~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      -+.+||+|+|.|.+|+.+|+.|+. ..+|.+.|+.... +.+.+..    +..   .++.++++++|+|+.++|..-. .
T Consensus        14 g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~~-~   91 (365)
T 3abi_A           14 GRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFLG-F   91 (365)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGGH-H
T ss_pred             CCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCccc-c
Confidence            344589999999999999999976 5789999986422 2222211    111   1467889999999999984321 1


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                      . +   .-+.++.|.-+++++
T Consensus        92 ~-v---~~~~~~~g~~yvD~s  108 (365)
T 3abi_A           92 K-S---IKAAIKSKVDMVDVS  108 (365)
T ss_dssp             H-H---HHHHHHHTCEEEECC
T ss_pred             h-H---HHHHHhcCcceEeee
Confidence            1 1   122345667777765

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.11  E-value=0.0056  Score=57.83  Aligned_cols=128  Identities=14%  Similarity=0.065  Sum_probs=89.5

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHHh
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRMQ  118 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~  118 (333)
                      .|...+|+|+|.-+....++-  +++=++.+.++                  .| .+.|+||++||= +++..+++..+.
T Consensus       118 lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~rva~Sl~~~~~  176 (315)
T 1pvv_A          118 LAKYATVPVINGLSDFSHPCQ--ALADYMTIWEK------------------KG-TIKGVKVVYVGDGNNVAHSLMIAGT  176 (315)
T ss_dssp             HHHHCSSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHH------------------hC-CcCCcEEEEECCCcchHHHHHHHHH
Confidence            445568999998766666654  34444443331                  11 478999999997 899999999999


Q ss_pred             hCCCEEEEEcCCC---CHHH---H----HhcCc--cc-cChhhhccCCCEEEEecCC-------chhh-----HhhccHH
Q psy6348         119 AFGMKVIGFDPMV---SVED---A----AKLNI--AS-LGLEDIWPLADYITVHTPL-------IPQT-----KNLINAE  173 (333)
Q Consensus       119 ~~G~~V~~~d~~~---~~~~---a----~~~gv--~~-~~l~ell~~aDvV~l~~P~-------t~~t-----~~li~~~  173 (333)
                      .+|++|....|..   ..+.   +    ++.|.  +. .+++|.++++|+|..-+=.       .++-     .-.++.+
T Consensus       177 ~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~e  256 (315)
T 1pvv_A          177 KLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKD  256 (315)
T ss_dssp             HTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHH
T ss_pred             HCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHH
Confidence            9999999998854   2211   1    24563  32 3799999999999984321       1111     2345888


Q ss_pred             HHhccCCCcEEEEcc
Q psy6348         174 VLKKCKKGVRVVNVA  188 (333)
Q Consensus       174 ~~~~mk~gailIN~a  188 (333)
                      .++.+|++++|..|.
T Consensus       257 ll~~a~~~ai~mH~l  271 (315)
T 1pvv_A          257 LVKHAKPDYMFMHCL  271 (315)
T ss_dssp             HHHTSCTTCEEEECS
T ss_pred             HHhhcCCCcEEECCC
Confidence            899999999999984

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=97.11  E-value=0.0022  Score=56.57  Aligned_cols=70  Identities=10%  Similarity=0.129  Sum_probs=51.6

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCc-ccc------ChhhhccCCCEEEEecCCc
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNI-ASL------GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv-~~~------~l~ell~~aDvV~l~~P~t  163 (333)
                      ..+.||++.|.|. |.||+.+++.|.+.|++|++.++.... +.....++ +.+      ++.+.+.++|+|+.+....
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~   95 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG   95 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence            5689999999998 999999999999999999999987633 23333355 332      3567788999999887643

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.10  E-value=0.00098  Score=63.18  Aligned_cols=66  Identities=20%  Similarity=0.221  Sum_probs=48.5

Q ss_pred             CEEEEEecChHHH-HHHHHHhhC-CCEEE-EEcCCCCHHHHHh---cCccc-cChhhhccC--CCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGR-EVALRMQAF-GMKVI-GFDPMVSVEDAAK---LNIAS-LGLEDIWPL--ADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~-~vA~~l~~~-G~~V~-~~d~~~~~~~a~~---~gv~~-~~l~ell~~--aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+ ..+..++.. +++|. ++|+....+.+++   .++.. .++++++.+  .|+|++++|...
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~   77 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHT   77 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGG
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHH
Confidence            3899999999999 567767665 77876 5787744444444   35544 489999986  899999999543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.09  E-value=0.0021  Score=63.63  Aligned_cols=94  Identities=19%  Similarity=0.148  Sum_probs=68.0

Q ss_pred             ccCCCEEEEEecCh----------HHHHHHHHHhhCCCEEEEEcCCCCHHHHHh-c-------------Ccccc-Chhhh
Q psy6348          95 ELYGKTLAVLGLGR----------IGREVALRMQAFGMKVIGFDPMVSVEDAAK-L-------------NIASL-GLEDI  149 (333)
Q Consensus        95 ~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~-~-------------gv~~~-~l~el  149 (333)
                      .+.|++|+|+|+--          -...+++.|...|.+|.+|||....+.... .             ++.+. +..+.
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA  405 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence            47899999999864          677899999999999999999875543311 1             23443 67888


Q ss_pred             ccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         150 WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       150 l~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      ++++|.|++++.- ++-+.+=-......|+...+++|. |+
T Consensus       406 ~~~ad~~vi~t~~-~~f~~~~~~~~~~~~~~~~~i~D~-r~  444 (467)
T 2q3e_A          406 CDGAHAVVICTEW-DMFKELDYERIHKKMLKPAFIFDG-RR  444 (467)
T ss_dssp             HTTCSEEEECSCC-GGGGGSCHHHHHHHSCSSCEEEES-SC
T ss_pred             HhCCcEEEEecCC-hhhhcCCHHHHHHhcCCCCEEEeC-CC
Confidence            9999999999873 444443223444667776668876 54

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.07  E-value=0.0052  Score=58.29  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=88.2

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHHH
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALRM  117 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l  117 (333)
                      .|.-.+|+|+|.-+....++-  +++=++.+.++                  .| .+.|+||++||=|  ++..+++..+
T Consensus       130 lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~  188 (325)
T 1vlv_A          130 LAEYSGVPVYNGLTDEFHPTQ--ALADLMTIEEN------------------FG-RLKGVKVVFMGDTRNNVATSLMIAC  188 (325)
T ss_dssp             HHHHHCSCEEESCCSSCCHHH--HHHHHHHHHHH------------------HS-CSTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHH------------------hC-CcCCcEEEEECCCCcCcHHHHHHHH
Confidence            344567999998766555654  33334433331                  12 4789999999986  9999999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH---H----HhcCcc--c-cChhhhccCCCEEEEecCC-------chh-----hHhhccH
Q psy6348         118 QAFGMKVIGFDPMV---SVED---A----AKLNIA--S-LGLEDIWPLADYITVHTPL-------IPQ-----TKNLINA  172 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~---a----~~~gv~--~-~~l~ell~~aDvV~l~~P~-------t~~-----t~~li~~  172 (333)
                      ..+|++|....|..   ..+.   +    ++.|..  . .+++|+++++|+|..-+=.       .++     ..-.++.
T Consensus       189 ~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~  268 (325)
T 1vlv_A          189 AKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNE  268 (325)
T ss_dssp             HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCH
T ss_pred             HHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCH
Confidence            99999999998753   2211   2    255633  3 3799999999999884321       011     1234578


Q ss_pred             HHHhcc-CCCcEEEEcc
Q psy6348         173 EVLKKC-KKGVRVVNVA  188 (333)
Q Consensus       173 ~~~~~m-k~gailIN~a  188 (333)
                      +.++.+ |++++|..|.
T Consensus       269 ell~~a~k~dai~mH~L  285 (325)
T 1vlv_A          269 RVMEMTGKSETIFMHCL  285 (325)
T ss_dssp             HHHHTTCCTTCEEEECS
T ss_pred             HHHHhccCCCeEEECCC
Confidence            888989 9999999984

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=97.06  E-value=0.0008  Score=63.49  Aligned_cols=66  Identities=17%  Similarity=0.251  Sum_probs=48.6

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEEE-EcCCCC--HHHHHhcCcc--ccChhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVIG-FDPMVS--VEDAAKLNIA--SLGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~~-~d~~~~--~~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+. ++..++.. +.+|.+ +|+...  .+.++++|+.  +.+++++++  +.|+|++++|...
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~   98 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQ   98 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCch
Confidence            38999999999986 46666654 678774 688652  2345667874  348999985  5899999999543

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=97.05  E-value=0.00089  Score=66.29  Aligned_cols=112  Identities=15%  Similarity=0.139  Sum_probs=70.8

Q ss_pred             CCCEEEEEecChH--HHHHHHHHhh----CCCEEEEEcCCCCH-HHHHhc---------Cccc-cChhhhccCCCEEEEe
Q psy6348          97 YGKTLAVLGLGRI--GREVALRMQA----FGMKVIGFDPMVSV-EDAAKL---------NIAS-LGLEDIWPLADYITVH  159 (333)
Q Consensus        97 ~gktvGIIGlG~I--G~~vA~~l~~----~G~~V~~~d~~~~~-~~a~~~---------gv~~-~~l~ell~~aDvV~l~  159 (333)
                      ..+||+|||.|.+  |..++..+..    .| +|..||..... +.....         .+.. .++++++++||+|+++
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            4569999999996  6788877654    47 99999986421 111111         1222 2788999999999999


Q ss_pred             cCCc-----------hhhHhhcc---------------------H---HHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         160 TPLI-----------PQTKNLIN---------------------A---EVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       160 ~P~t-----------~~t~~li~---------------------~---~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ++.-           +.-.|+..                     .   +.+....|++++||++..--+-..++.+.+..
T Consensus        83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~~p~  162 (450)
T 3fef_A           83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPG  162 (450)
T ss_dssp             CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTT
T ss_pred             cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHCCC
Confidence            9632           22222211                     1   23334468999999988765555555554433


Q ss_pred             CCceE
Q psy6348         205 GHCGG  209 (333)
Q Consensus       205 g~i~g  209 (333)
                      .++.|
T Consensus       163 ~rviG  167 (450)
T 3fef_A          163 IKAIG  167 (450)
T ss_dssp             CEEEE
T ss_pred             CCEEE
Confidence            44443

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=97.04  E-value=0.00068  Score=64.51  Aligned_cols=93  Identities=13%  Similarity=0.053  Sum_probs=60.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHH--hc--C--------ccc-cChhhhccCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAA--KL--N--------IAS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~--~~--g--------v~~-~~l~ell~~aDvV~l~~P  161 (333)
                      ..++|+|||.|.||..+|..+...|+  +|..||.........  ++  +        +.. .+.++ +++||+|+++..
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999988787  999999854221111  00  1        111 15555 899999999864


Q ss_pred             Cch-----------hhHhhcc--HHHHhccCCCcEEEEccCC
Q psy6348         162 LIP-----------QTKNLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       162 ~t~-----------~t~~li~--~~~~~~mk~gailIN~aRg  190 (333)
                      ...           .+..++.  .+.+....|++++++++-.
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP  140 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL  140 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence            321           1112221  1233345789999999753

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=97.04  E-value=0.0011  Score=62.93  Aligned_cols=112  Identities=13%  Similarity=0.024  Sum_probs=67.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHH--HHhc--C------ccc-cChhhhccCCCEEEEecCCch
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVED--AAKL--N------IAS-LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~--g------v~~-~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ..||+|||.|.+|..++..+...++  ++..||.......  +.++  .      +.. .+..+.+++||+|+++.+...
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~   88 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ   88 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            3699999999999999998877665  8999998542111  1111  1      111 145677999999999986432


Q ss_pred             hhHhh------------cc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEE
Q psy6348         165 QTKNL------------IN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGA  210 (333)
Q Consensus       165 ~t~~l------------i~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~ga  210 (333)
                       ..++            +.  .+.+....|++++|+++-.--+....+.+.  +...++.|.
T Consensus        89 -k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  149 (326)
T 2zqz_A           89 -KPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPVDILTYATWKLSGFPKNRVVGS  149 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred             -CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHHcCCCHHHEEEc
Confidence             1211            10  112233368999999844333333334343  344466666

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=97.02  E-value=0.00073  Score=63.91  Aligned_cols=67  Identities=16%  Similarity=0.130  Sum_probs=46.6

Q ss_pred             CEEEEEecChHHHHH-HH-HHh-hCCCEEE-EEcCCCCHH-HHHhc-Cccc-cChhhhccC--CCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREV-AL-RMQ-AFGMKVI-GFDPMVSVE-DAAKL-NIAS-LGLEDIWPL--ADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~v-A~-~l~-~~G~~V~-~~d~~~~~~-~a~~~-gv~~-~~l~ell~~--aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+.+ +. .+. .-++++. ++|+..... ...+. ++.. .++++++.+  .|+|++++|....
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h   78 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSH   78 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGH
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHH
Confidence            379999999999974 44 323 3478877 678876432 22222 4543 489999986  8999999995443

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=97.02  E-value=0.00055  Score=65.30  Aligned_cols=64  Identities=11%  Similarity=0.199  Sum_probs=46.6

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEE-EEcCCCCH--HHHHhcC-cc-ccChhhhccC--CCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVI-GFDPMVSV--EDAAKLN-IA-SLGLEDIWPL--ADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~g-v~-~~~l~ell~~--aDvV~l~~P~  162 (333)
                      .++||||+|.||+. +++.++.. +.++. ++|+....  +.+++.+ .. +.++++++++  .|+|++++|.
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   78 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPP   78 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCc
Confidence            58999999999996 88888776 77876 67886522  1222332 33 3489999974  5999999994

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=97.02  E-value=0.0013  Score=62.33  Aligned_cols=94  Identities=16%  Similarity=0.129  Sum_probs=59.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHH--hc--------Cccc-cChhhhccCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAA--KL--------NIAS-LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~--~~--------gv~~-~~l~ell~~aDvV~l~~P~t  163 (333)
                      .+++|+|||.|.||+.+|..+...|+  ++..||.........  ++        .+.. .+..+.+++||+|+++....
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~   87 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCC
Confidence            56799999999999999999987777  999999854221111  11        1111 13467899999999987532


Q ss_pred             --h-hhH-hhc--c----H---HHHhccCCCcEEEEccCC
Q psy6348         164 --P-QTK-NLI--N----A---EVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       164 --~-~t~-~li--~----~---~~~~~mk~gailIN~aRg  190 (333)
                        + .++ .++  +    +   +.+....|++++++++-.
T Consensus        88 ~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNP  127 (326)
T 3vku_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANP  127 (326)
T ss_dssp             ----------------CHHHHHHHHHTTTCCSEEEECSSS
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCc
Confidence              1 111 112  1    1   233445689999999743

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=97.02  E-value=0.002  Score=60.86  Aligned_cols=88  Identities=19%  Similarity=0.177  Sum_probs=67.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc--ChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~--~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      .|++|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+  +.+++.+..|+|+-++....     .-..
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~  250 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD  250 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence            58899999999999999999999999999999776 5567788886532  33444447899998876432     1245


Q ss_pred             HHhccCCCcEEEEccC
Q psy6348         174 VLKKCKKGVRVVNVAR  189 (333)
Q Consensus       174 ~~~~mk~gailIN~aR  189 (333)
                      .+..++++..++.++.
T Consensus       251 ~~~~l~~~G~iv~~G~  266 (348)
T 3two_A          251 YLKLLTYNGDLALVGL  266 (348)
T ss_dssp             HHTTEEEEEEEEECCC
T ss_pred             HHHHHhcCCEEEEECC
Confidence            6677888888888854

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.99  E-value=0.00068  Score=64.29  Aligned_cols=66  Identities=18%  Similarity=0.171  Sum_probs=47.6

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEE-EEcCCCCHHHHHhc-Cccc-cChhhhccC--CCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVI-GFDPMVSVEDAAKL-NIAS-LGLEDIWPL--ADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-gv~~-~~l~ell~~--aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+. .+..++.. +++|. ++|+...... +.. ++.. .++++++..  .|+|++++|....
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   80 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTH   80 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECSCTTTH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeCChHHH
Confidence            48999999999997 77777765 77876 5787542222 222 3433 489999975  9999999996543

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.99  E-value=0.0042  Score=59.76  Aligned_cols=128  Identities=16%  Similarity=0.089  Sum_probs=86.1

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHHH
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALRM  117 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l  117 (333)
                      .|.-.+|+|.|.-+...-++-  +++=++.+.++                  .| .+.|+||++||=|  ++..+++..+
T Consensus       143 lA~~s~vPVINa~~~~~HPtQ--aLaDl~Ti~E~------------------~G-~l~glkva~vGD~~nnva~Sl~~~~  201 (365)
T 4amu_A          143 LVKYSGVPVWNGLTDDEHPTQ--IIADFMTMKEK------------------FG-NLKNKKIVFIGDYKNNVGVSTMIGA  201 (365)
T ss_dssp             HHHHHCSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-SCTTCEEEEESSTTSHHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHH------------------hC-CCCCCEEEEECCCCcchHHHHHHHH
Confidence            345568999998665555543  33333333221                  12 2789999999988  7889999999


Q ss_pred             hhCCCEEEEEcCCC--C---HHH-------HHhcCcc--c-cChhhhccCCCEEEEec--CCch--h---h------Hhh
Q psy6348         118 QAFGMKVIGFDPMV--S---VED-------AAKLNIA--S-LGLEDIWPLADYITVHT--PLIP--Q---T------KNL  169 (333)
Q Consensus       118 ~~~G~~V~~~d~~~--~---~~~-------a~~~gv~--~-~~l~ell~~aDvV~l~~--P~t~--~---t------~~l  169 (333)
                      ..+|++|....|..  .   .+.       +++.|..  . .+++|++++||+|..-+  ...+  +   .      .-.
T Consensus       202 ~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~  281 (365)
T 4amu_A          202 AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQ  281 (365)
T ss_dssp             HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCC
T ss_pred             HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcccc
Confidence            99999999998743  1   111       2344533  3 38999999999998732  1111  1   0      123


Q ss_pred             ccHHHHhccCCCcEEEEcc
Q psy6348         170 INAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~a  188 (333)
                      ++.+.++.+|++++|..|.
T Consensus       282 vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          282 VDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             BCHHHHHHSCTTCEEEECS
T ss_pred             cCHHHHHhcCCCcEEECCC
Confidence            6888888899999999984

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.97  E-value=0.006  Score=57.46  Aligned_cols=128  Identities=14%  Similarity=0.079  Sum_probs=85.5

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHHh
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRMQ  118 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~  118 (333)
                      .|...+|+|+|.-+....++-  +++=++.+.++                  .| .+.|+||++||= +++..+++..+.
T Consensus       117 lA~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~glkva~vGD~~~va~Sl~~~~~  175 (309)
T 4f2g_A          117 FAENSRVPVINGLTNEYHPCQ--VLADIFTYYEH------------------RG-PIRGKTVAWVGDANNMLYTWIQAAR  175 (309)
T ss_dssp             HHHTCSSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEECCCCccCcHH--HHHHHHHHHHH------------------hC-CCCCCEEEEECCCcchHHHHHHHHH
Confidence            455678999999765555553  33333333221                  12 378999999996 678888899999


Q ss_pred             hCCCEEEEEcCCC---CHHH-HHhcCc--cc-cChhhhccCCCEEEEec----CC---ch-----hhHhhccHHHHhccC
Q psy6348         119 AFGMKVIGFDPMV---SVED-AAKLNI--AS-LGLEDIWPLADYITVHT----PL---IP-----QTKNLINAEVLKKCK  179 (333)
Q Consensus       119 ~~G~~V~~~d~~~---~~~~-a~~~gv--~~-~~l~ell~~aDvV~l~~----P~---t~-----~t~~li~~~~~~~mk  179 (333)
                      .+|++|....|..   +.+. +++.|.  +. .+++|.++++|+|..-+    ..   .+     -..-.++.+.++.+|
T Consensus       176 ~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~  255 (309)
T 4f2g_A          176 ILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHAN  255 (309)
T ss_dssp             HHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSC
T ss_pred             HcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcC
Confidence            9999999988743   2221 123333  22 38999999999998754    10   00     012346888889899


Q ss_pred             CCcEEEEcc
Q psy6348         180 KGVRVVNVA  188 (333)
Q Consensus       180 ~gailIN~a  188 (333)
                      ++++|..|.
T Consensus       256 ~~ai~mH~l  264 (309)
T 4f2g_A          256 SDALFMHCL  264 (309)
T ss_dssp             TTCEEEECS
T ss_pred             CCeEEECCC
Confidence            999999984

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=96.95  E-value=0.0052  Score=58.21  Aligned_cols=116  Identities=19%  Similarity=0.153  Sum_probs=69.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHH--H---Hh------cCccc--cChhhhccCCCEEEEecC
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVED--A---AK------LNIAS--LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~--a---~~------~gv~~--~~l~ell~~aDvV~l~~P  161 (333)
                      +..++|+|||.|.||..+|..+...|+ +|..||.......  +   .+      .....  .+-.+.+++||+|+++.+
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~~a~~~aDiVIiaag   84 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDYAAIEGADVVIVTAG   84 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSGGGGTTCSEEEECCS
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCHHHHCCCCEEEEccC
Confidence            356799999999999999999988888 9999998764321  1   11      11221  122378999999999975


Q ss_pred             Cc--h-hhH--------hhcc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE
Q psy6348         162 LI--P-QTK--------NLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA  211 (333)
Q Consensus       162 ~t--~-~t~--------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa  211 (333)
                      ..  + .++        .++.  .+.+....|++++++++-.--+....+.+.  +...++.|.+
T Consensus        85 ~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPvd~~t~~~~k~sg~p~~rviG~~  149 (324)
T 3gvi_A           85 VPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPLDAMVWALQKFSGLPAHKVVGMA  149 (324)
T ss_dssp             CCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             cCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCcHHHHHHHHHhcCCCHHHEEeec
Confidence            22  1 111        1111  012233458999999985433333333332  2223555555

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=96.94  E-value=0.0026  Score=62.81  Aligned_cols=67  Identities=18%  Similarity=0.143  Sum_probs=49.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH--HhcC-cc-----cc---ChhhhccCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA--AKLN-IA-----SL---GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--~~~g-v~-----~~---~l~ell~~aDvV~l~~P~t  163 (333)
                      .+++++|+|.|.||+.+++.|...|.+|.++|+.......  ...+ +.     ..   +++++++++|+|+.++|..
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~   79 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT   79 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence            4789999999999999999999999999999986422111  1111 21     11   3457788999999999854

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.93  E-value=0.0037  Score=59.00  Aligned_cols=115  Identities=15%  Similarity=0.152  Sum_probs=69.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC--CHHHHHhc-----------C--ccccChhhhccCCCEEEEec
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV--SVEDAAKL-----------N--IASLGLEDIWPLADYITVHT  160 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~--~~~~a~~~-----------g--v~~~~l~ell~~aDvV~l~~  160 (333)
                      ..++|+|||.|.||..+|..+...|+ +|..||...  ........           .  +...+-.+.+++||+|+++.
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa   86 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA   86 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence            46799999999999999999998899 999999973  11111110           1  11122357789999999997


Q ss_pred             CC--ch-hhH-hhc--c----H---HHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE
Q psy6348         161 PL--IP-QTK-NLI--N----A---EVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA  211 (333)
Q Consensus       161 P~--t~-~t~-~li--~----~---~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa  211 (333)
                      ..  .+ .++ .++  +    +   +.+....|++++++++-.-=+....+.+.  +...++.|.+
T Consensus        87 g~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPvd~~t~~~~k~sg~p~~rviG~g  152 (315)
T 3tl2_A           87 GIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPVDAMTYSVFKEAGFPKERVIGQS  152 (315)
T ss_dssp             SCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHHHHHHHHHHHCCCGGGEEECC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChHHHHHHHHHHhcCCChHHEEeec
Confidence            42  21 111 111  1    1   12333468899999985433333333332  2234566653

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=96.93  E-value=0.0023  Score=60.27  Aligned_cols=108  Identities=18%  Similarity=0.140  Sum_probs=70.4

Q ss_pred             CCEEEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH---HHHHhcCcccc---Chhhhc-cCCCEEEEe--cC-Cchhh
Q psy6348          98 GKTLAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV---EDAAKLNIASL---GLEDIW-PLADYITVH--TP-LIPQT  166 (333)
Q Consensus        98 gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~---~~a~~~gv~~~---~l~ell-~~aDvV~l~--~P-~t~~t  166 (333)
                      .|++.|||.|.+|.+ +|+.|+..|++|.++|.....   +..++.|+...   +.+++. .++|+|+..  +| .+|..
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spgi~~~~p~~   83 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNVAKRGMDVV   83 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTTCCTTCHHH
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCCcCCCCHHH
Confidence            579999999999996 999999999999999986532   34556687653   445555 579999986  33 33332


Q ss_pred             Hh-------hccHH-HHhc--cCCC-cEEEEccCCcccchHhHHhhhhcC
Q psy6348         167 KN-------LINAE-VLKK--CKKG-VRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       167 ~~-------li~~~-~~~~--mk~g-ailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      ..       ++++- .+..  +++. .+-|--+.|+--...-+...|+..
T Consensus        84 ~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           84 EAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             HHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            21       33333 3333  3332 344444567766666666777653

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.92  E-value=0.0027  Score=59.31  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=70.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHH--HH---h----c--C--ccccChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVED--AA---K----L--N--IASLGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~---~----~--g--v~~~~l~ell~~aDvV~l~~P~t  163 (333)
                      ++|+|||.|.||..+|..|...|.  +|..||+......  +.   +    +  .  +...+-.+.+++||+|+++.+..
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~~a~~~aDiVViaag~~   80 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCCHHHhCCCCEEEECCCCC
Confidence            489999999999999999988787  9999998652211  11   1    1  1  11122278899999999997532


Q ss_pred             --h-hhH--------hhcc--HHHHhccCCCcEEEEccCCcccchHhH--Hhh--hhcCCceEEE--ec
Q psy6348         164 --P-QTK--------NLIN--AEVLKKCKKGVRVVNVARGGIVDENAL--LDS--LKCGHCGGAA--LD  213 (333)
Q Consensus       164 --~-~t~--------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL--~~a--L~~g~i~gaa--lD  213 (333)
                        + .++        .++.  .+.+....|++++++++  .++|.-..  .+.  +...++.|.+  ||
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence              1 111        1111  12344457899999998  44554332  221  1235677764  56

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=96.92  E-value=0.0021  Score=64.16  Aligned_cols=98  Identities=18%  Similarity=0.146  Sum_probs=69.8

Q ss_pred             cccCCCEEEEEecCh----------HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCC
Q psy6348          94 TELYGKTLAVLGLGR----------IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        94 ~~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~  162 (333)
                      ..+.|++|+|+|+--          =...+++.|...|.+|.+|||....  .  .++.+ .++++.+++||.|+++++ 
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~--~--~~~~~~~~~~~~~~~ad~vvi~t~-  423 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN--Y--PGVEISDNLEEVVRNADAIVVLAG-  423 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC--B--TTBCEESCHHHHHTTCSEEEECSC-
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc--c--cCcceecCHHHHHhcCCEEEEecC-
Confidence            467899999999842          3578899999999999999998752  1  12333 378999999999999987 


Q ss_pred             chhhHhhccHHHHhccC-CCcEEEEccCCcccchHhH
Q psy6348         163 IPQTKNLINAEVLKKCK-KGVRVVNVARGGIVDENAL  198 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk-~gailIN~aRg~~vd~~aL  198 (333)
                      .++-+.+=-....+.|+ +..+++|. |+- .|.+.+
T Consensus       424 ~~~f~~~d~~~~~~~~~~~~~~i~D~-rn~-~~~~~~  458 (478)
T 3g79_A          424 HSAYSSLKADWAKKVSAKANPVIIDG-RNV-IEPDEF  458 (478)
T ss_dssp             CHHHHSCCHHHHHHHHCCSSCEEEES-SSC-SCHHHH
T ss_pred             CHHHHhhhHHHHHHHhccCCCEEEEC-CCC-CCHHHH
Confidence            44444433344556677 47899995 553 444443

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=96.90  E-value=0.0021  Score=63.98  Aligned_cols=66  Identities=17%  Similarity=0.279  Sum_probs=50.6

Q ss_pred             CCEEEEEec----ChHHHHHHHHHhhC--CCEEE-EEcCCCCH--HHHHhcCcc----ccChhhhcc--CCCEEEEecCC
Q psy6348          98 GKTLAVLGL----GRIGREVALRMQAF--GMKVI-GFDPMVSV--EDAAKLNIA----SLGLEDIWP--LADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGl----G~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~gv~----~~~l~ell~--~aDvV~l~~P~  162 (333)
                      -.+|||||+    |.||+..++.++..  +++|+ ++|+....  +.+++.|+.    +.+++++++  +.|+|++++|.
T Consensus        39 ~irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~  118 (479)
T 2nvw_A           39 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV  118 (479)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             cCEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCc
Confidence            358999999    99999999999876  77865 67886522  234556764    348999985  69999999994


Q ss_pred             c
Q psy6348         163 I  163 (333)
Q Consensus       163 t  163 (333)
                      .
T Consensus       119 ~  119 (479)
T 2nvw_A          119 P  119 (479)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.90  E-value=0.00054  Score=61.33  Aligned_cols=64  Identities=16%  Similarity=0.127  Sum_probs=41.3

Q ss_pred             CEEEEEecChHHHHHHHH--HhhCCCEEEE-EcCCCCHHHHHhcCcc---ccChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALR--MQAFGMKVIG-FDPMVSVEDAAKLNIA---SLGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~--l~~~G~~V~~-~d~~~~~~~a~~~gv~---~~~l~ell~~aDvV~l~~P~  162 (333)
                      ++++|||.|++|+.+++.  ....|+++.+ +|..+......-.|+.   ..++++++++.|++++++|.
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            579999999999999993  4566888775 5765432211112332   23688888777999999994

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.87  E-value=0.0053  Score=60.46  Aligned_cols=113  Identities=19%  Similarity=0.258  Sum_probs=72.8

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE-Ec-------CCC-CHHHHH----hcC-------ccccChhhhcc-
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-FD-------PMV-SVEDAA----KLN-------IASLGLEDIWP-  151 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d-------~~~-~~~~a~----~~g-------v~~~~l~ell~-  151 (333)
                      |.++.|+++.|.|+|++|+.+|+.|...|.+|++ .|       |.- ..+...    +.|       .+..+.++++. 
T Consensus       230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~  309 (440)
T 3aog_A          230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL  309 (440)
T ss_dssp             TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred             CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence            4578999999999999999999999999999984 33       321 222221    122       13334556553 


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +||+++-|..     .+.++.+....++ -.+++-.+-+.+ ..+ -.+.|.+..+. ++=|.
T Consensus       310 ~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~-t~e-A~~iL~~~GI~-~~PD~  363 (440)
T 3aog_A          310 PVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPT-TPA-ADDILLEKGVL-VVPDV  363 (440)
T ss_dssp             CCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHH-HHHHHHHHTCE-EECHH
T ss_pred             CCcEEEecCC-----cCccchhhHHHcC-CcEEEecCcccc-CHH-HHHHHHHCCCE-EEChH
Confidence            6999998864     4567777767773 456666666665 333 33555555554 44443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.87  E-value=0.0016  Score=61.94  Aligned_cols=66  Identities=15%  Similarity=0.162  Sum_probs=48.5

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEE-EEcCCCCHHHHHhc-Cccc-cChhhhcc--CCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVI-GFDPMVSVEDAAKL-NIAS-LGLEDIWP--LADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-gv~~-~~l~ell~--~aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+. .+..++.. +++|. ++|+.... .+++. ++.. .++++++.  +.|+|++++|....
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H   78 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEE-VKRDFPDAEVVHELEEITNDPAIELVIVTTPSGLH   78 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHH-HHHHCTTSEEESSTHHHHTCTTCCEEEECSCTTTH
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCCCCceECCHHHHhcCCCCCEEEEcCCcHHH
Confidence            48999999999997 67777765 78876 46775422 33344 4443 48999998  79999999996543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.86  E-value=0.0016  Score=61.77  Aligned_cols=67  Identities=16%  Similarity=0.232  Sum_probs=48.1

Q ss_pred             CCEEEEEecChHHHHHHHHHhhC--------CCEEEE-EcCCCC--HHHHHhcCcc--ccChhhhcc--CCCEEEEecCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAF--------GMKVIG-FDPMVS--VEDAAKLNIA--SLGLEDIWP--LADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~--------G~~V~~-~d~~~~--~~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~  162 (333)
                      --+|||||+|.||+.-++.++++        +.+|.+ +|+...  .+.++++|+.  +.+++++++  +.|+|++++|.
T Consensus        25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~  104 (393)
T 4fb5_A           25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPN  104 (393)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCG
T ss_pred             CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCCh
Confidence            34899999999999887766543        567665 687663  2445667874  348999985  58999999995


Q ss_pred             ch
Q psy6348         163 IP  164 (333)
Q Consensus       163 t~  164 (333)
                      ..
T Consensus       105 ~~  106 (393)
T 4fb5_A          105 QF  106 (393)
T ss_dssp             GG
T ss_pred             HH
Confidence            44

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.85  E-value=0.0014  Score=62.47  Aligned_cols=91  Identities=15%  Similarity=0.059  Sum_probs=61.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC---C-HHHHHhcCccccC---hhhhc----cCCCEEEEecCCc
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV---S-VEDAAKLNIASLG---LEDIW----PLADYITVHTPLI  163 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~---~-~~~a~~~gv~~~~---l~ell----~~aDvV~l~~P~t  163 (333)
                      ++.|++|.|+|.|.||..+++.++.+|.+|++.++..   . .+.++++|...++   +.+.+    ...|+|+-++...
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            5679999999999999999999999999999999865   2 2445566654321   11111    3477777777632


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      ...   + ...+..|+++..+|+++-
T Consensus       258 ~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          258 VNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             THH---H-HHHGGGEEEEEEEEECSC
T ss_pred             HHH---H-HHHHHHHhcCCEEEEEec
Confidence            211   0 344566777777777643

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.85  E-value=0.0038  Score=58.76  Aligned_cols=129  Identities=22%  Similarity=0.245  Sum_probs=86.4

Q ss_pred             hhHhhCCcEEEECCC-CCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHH
Q psy6348          39 TAATRKGVLVLNAPG-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVA  114 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~-~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA  114 (333)
                      +.|...+|+|.|.-. ....++-  +++=++.+.++                  .| .+.|+||++||=   |++..+++
T Consensus       116 ~la~~~~vPVINag~g~~~HPtQ--~LaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~~rva~Sl~  174 (308)
T 1ml4_A          116 LAAEVAEVPVINAGDGSNQHPTQ--TLLDLYTIKKE------------------FG-RIDGLKIGLLGDLKYGRTVHSLA  174 (308)
T ss_dssp             HHHHTCSSCEEEEEETTSCCHHH--HHHHHHHHHHH------------------SS-CSSSEEEEEESCTTTCHHHHHHH
T ss_pred             HHHHhCCCCEEeCccCCccCcHH--HHHHHHHHHHH------------------hC-CCCCeEEEEeCCCCcCchHHHHH
Confidence            344566799999854 4555554  33334433331                  12 378999999998   48999999


Q ss_pred             HHHhhCCCEEEEEcCCC---CH---HHHHhcCccc---cChhhhccCCCEEEEecCCc------hhhH-----hhccHHH
Q psy6348         115 LRMQAFGMKVIGFDPMV---SV---EDAAKLNIAS---LGLEDIWPLADYITVHTPLI------PQTK-----NLINAEV  174 (333)
Q Consensus       115 ~~l~~~G~~V~~~d~~~---~~---~~a~~~gv~~---~~l~ell~~aDvV~l~~P~t------~~t~-----~li~~~~  174 (333)
                      ..+..+|++|....|..   ..   +.+++.|..+   .+++|+++++|+|..-.=-.      ++..     -.++.+.
T Consensus       175 ~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~l  254 (308)
T 1ml4_A          175 EALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKV  254 (308)
T ss_dssp             HHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTG
T ss_pred             HHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHH
Confidence            99999999999998753   22   2233446543   37999999999998854211      1111     2346677


Q ss_pred             HhccCCCcEEEEcc
Q psy6348         175 LKKCKKGVRVVNVA  188 (333)
Q Consensus       175 ~~~mk~gailIN~a  188 (333)
                      ++.+|+++++..|.
T Consensus       255 l~~a~~~ai~mH~l  268 (308)
T 1ml4_A          255 LEKAKDELRIMHPL  268 (308)
T ss_dssp             GGGSCTTCEEECCS
T ss_pred             HhhcCCCCEEECCC
Confidence            77778888888873

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.84  E-value=0.012  Score=56.10  Aligned_cols=129  Identities=18%  Similarity=0.160  Sum_probs=87.0

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM  117 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l  117 (333)
                      +.|...+|+|+|.-+....++-  +++=++.+.++                  .| .+.|+||++||= +++..+++..+
T Consensus       141 ~lA~~~~vPVINag~~~~HPtQ--aLaDl~TI~E~------------------~G-~l~glkva~vGD~~nva~Sl~~~~  199 (340)
T 4ep1_A          141 ELAKESSIPVINGLTDDHHPCQ--ALADLMTIYEE------------------TN-TFKGIKLAYVGDGNNVCHSLLLAS  199 (340)
T ss_dssp             HHHHHCSSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHH------------------hC-CCCCCEEEEECCCchhHHHHHHHH
Confidence            3456678999998665555543  33333333321                  12 378999999996 67888899999


Q ss_pred             hhCCCEEEEEcCCC---CHHH-------HHhcCc--cc-cChhhhccCCCEEEEecCCch------hh-----HhhccHH
Q psy6348         118 QAFGMKVIGFDPMV---SVED-------AAKLNI--AS-LGLEDIWPLADYITVHTPLIP------QT-----KNLINAE  173 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~-------a~~~gv--~~-~~l~ell~~aDvV~l~~P~t~------~t-----~~li~~~  173 (333)
                      ..+|++|....|..   +.+.       +++.|.  +. .+++|+++++|+|..-.=-..      +.     .-.++.+
T Consensus       200 ~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~e  279 (340)
T 4ep1_A          200 AKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKE  279 (340)
T ss_dssp             HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCHH
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCHH
Confidence            99999999988753   2221       124563  32 389999999999987542110      10     1246888


Q ss_pred             HHhccCCCcEEEEcc
Q psy6348         174 VLKKCKKGVRVVNVA  188 (333)
Q Consensus       174 ~~~~mk~gailIN~a  188 (333)
                      .++.+|++++|..|.
T Consensus       280 ll~~ak~dai~MHcL  294 (340)
T 4ep1_A          280 LVKHAKQTYHFLHCL  294 (340)
T ss_dssp             HHTTSCTTCEEEECS
T ss_pred             HHHhcCCCcEEECCC
Confidence            889999999999985

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.84  E-value=0.0076  Score=57.05  Aligned_cols=128  Identities=13%  Similarity=0.104  Sum_probs=86.4

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC-hHHHHHHHHHh
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG-RIGREVALRMQ  118 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~l~  118 (333)
                      .|...+|+|+|.-+....++-  +++=++.+.++                  .| .+.|++|++||=| ++..+++..+.
T Consensus       118 lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~va~Sl~~~~~  176 (321)
T 1oth_A          118 LAKEASIPIINGLSDLYHPIQ--ILADYLTLQEH------------------YS-SLKGLTLSWIGDGNNILHSIMMSAA  176 (321)
T ss_dssp             HHHHCSSCEEESCCSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCSSHHHHHHHTTTG
T ss_pred             HHHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHH------------------hC-CcCCcEEEEECCchhhHHHHHHHHH
Confidence            455568999998765555654  34444443332                  11 3789999999985 58888888888


Q ss_pred             hCCCEEEEEcCCC---CHHH---H----HhcC--ccc-cChhhhccCCCEEEEec----CCchhh----H----hhccHH
Q psy6348         119 AFGMKVIGFDPMV---SVED---A----AKLN--IAS-LGLEDIWPLADYITVHT----PLIPQT----K----NLINAE  173 (333)
Q Consensus       119 ~~G~~V~~~d~~~---~~~~---a----~~~g--v~~-~~l~ell~~aDvV~l~~----P~t~~t----~----~li~~~  173 (333)
                      .+|++|....|..   ..+.   +    ++.|  ++. .+++|+++++|+|..-+    ....+.    +    -.++.+
T Consensus       177 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~  256 (321)
T 1oth_A          177 KFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMK  256 (321)
T ss_dssp             GGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHH
T ss_pred             HcCCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHH
Confidence            9999999998854   2211   1    1345  333 37999999999999843    111111    1    235788


Q ss_pred             HHhccCCCcEEEEcc
Q psy6348         174 VLKKCKKGVRVVNVA  188 (333)
Q Consensus       174 ~~~~mk~gailIN~a  188 (333)
                      .++.+|++++|..|.
T Consensus       257 ~l~~a~~dai~mH~l  271 (321)
T 1oth_A          257 TAKVAASDWTFLHCL  271 (321)
T ss_dssp             HHHTSCTTCEEEECS
T ss_pred             HHhhcCCCCEEECCC
Confidence            888899999999983

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=96.84  E-value=0.0038  Score=62.12  Aligned_cols=99  Identities=18%  Similarity=0.230  Sum_probs=67.3

Q ss_pred             cccCCCEEEEEecCh----------HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC------------cccc-Chhhhc
Q psy6348          94 TELYGKTLAVLGLGR----------IGREVALRMQAFGMKVIGFDPMVSVEDAAKLN------------IASL-GLEDIW  150 (333)
Q Consensus        94 ~~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g------------v~~~-~l~ell  150 (333)
                      ..+.|++|+|+|+--          =...+++.|...|.+|.+|||....+....++            +.++ ++++.+
T Consensus       324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (478)
T 2y0c_A          324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAA  403 (478)
T ss_dssp             SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHT
T ss_pred             ccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHH
Confidence            357899999999843          45678999999999999999986332112222            4444 678899


Q ss_pred             cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchH
Q psy6348         151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDEN  196 (333)
Q Consensus       151 ~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~  196 (333)
                      ++||+|++++.- ++-+.+--....+.|+ +.+++|+ |+ +.+.+
T Consensus       404 ~~ad~~vi~t~~-~~f~~~~~~~~~~~~~-~~~i~D~-r~-~~~~~  445 (478)
T 2y0c_A          404 RDADALVIVTEW-KIFKSPDFVALGRLWK-TPVIFDG-RN-LYEPE  445 (478)
T ss_dssp             TTCSEEEECSCC-GGGGSCCHHHHHTTCS-SCEEEES-SC-CSCHH
T ss_pred             hCCCEEEEecCC-hHhhccCHHHHHhhcC-CCEEEEC-CC-CCCHH
Confidence            999999999874 3433332233445565 4788887 44 33443

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.84  E-value=0.024  Score=53.32  Aligned_cols=129  Identities=12%  Similarity=0.001  Sum_probs=87.9

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccC-CCEEEEEec-ChHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELY-GKTLAVLGL-GRIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~-gktvGIIGl-G~IG~~vA~~  116 (333)
                      +.|...+|+|+|.-.....++-  +++=++.+.++.                  | .+. |+||++||= +++..+++..
T Consensus       107 ~lA~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~~------------------g-~l~~gl~va~vGD~~~va~Sl~~~  165 (307)
T 3tpf_A          107 EFARYSKAPVINALSELYHPTQ--VLGDLFTIKEWN------------------K-MQNGIAKVAFIGDSNNMCNSWLIT  165 (307)
T ss_dssp             HHHHHCSSCEEEEECSSCCHHH--HHHHHHHHHHTT------------------C-CGGGCCEEEEESCSSHHHHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCcCcHH--HHHHHHHHHHHh------------------C-CCCCCCEEEEEcCCCccHHHHHHH
Confidence            3455678999998766555553  333344433321                  2 367 999999996 6788888899


Q ss_pred             HhhCCCEEEEEcCCC---CHHH---HH----hcCcc--c-cChhhhccCCCEEEEec---CCch-h--------hHhhcc
Q psy6348         117 MQAFGMKVIGFDPMV---SVED---AA----KLNIA--S-LGLEDIWPLADYITVHT---PLIP-Q--------TKNLIN  171 (333)
Q Consensus       117 l~~~G~~V~~~d~~~---~~~~---a~----~~gv~--~-~~l~ell~~aDvV~l~~---P~t~-~--------t~~li~  171 (333)
                      +..+|++|....|..   ..+.   ++    +.|..  . .+++|.++++|+|..-.   -..+ +        ..-.++
T Consensus       166 ~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~  245 (307)
T 3tpf_A          166 AAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMID  245 (307)
T ss_dssp             HHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBC
T ss_pred             HHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccC
Confidence            999999999988753   2221   11    34533  2 38999999999998865   1110 0        012358


Q ss_pred             HHHHhccCCCcEEEEcc
Q psy6348         172 AEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       172 ~~~~~~mk~gailIN~a  188 (333)
                      .+.++.+|++++|..|.
T Consensus       246 ~e~l~~a~~~ai~mH~l  262 (307)
T 3tpf_A          246 EKAMSVANKDAILLHCL  262 (307)
T ss_dssp             HHHHHHSCTTCEEEECS
T ss_pred             HHHHHhcCCCcEEECCC
Confidence            88889999999999985

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=96.83  E-value=0.0015  Score=60.56  Aligned_cols=101  Identities=13%  Similarity=0.072  Sum_probs=64.3

Q ss_pred             CEEEEEecChHHHHHHHHHhh----CCCEEE-EEcCCCCHHHHHhcCccccChhhhcc--CCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQA----FGMKVI-GFDPMVSVEDAAKLNIASLGLEDIWP--LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~----~G~~V~-~~d~~~~~~~a~~~gv~~~~l~ell~--~aDvV~l~~P~t~~t~~li~  171 (333)
                      .+|||||+|.||+..++.+..    -+++++ ++|+...   ++..|+.+.+++++++  +.|+|++++|......    
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~---a~~~g~~~~~~~ell~~~~vD~V~i~tp~~~H~~----   80 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL---GSLDEVRQISLEDALRSQEIDVAYICSESSSHED----   80 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC---CEETTEEBCCHHHHHHCSSEEEEEECSCGGGHHH----
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHH---HHHcCCCCCCHHHHhcCCCCCEEEEeCCcHhHHH----
Confidence            489999999999999988865    367766 4676431   2334665568999986  6899999999543322    


Q ss_pred             HHHHhccCCCc-EEEEc-cCCcccchHhHHhhhhcCCc
Q psy6348         172 AEVLKKCKKGV-RVVNV-ARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 ~~~~~~mk~ga-ilIN~-aRg~~vd~~aL~~aL~~g~i  207 (333)
                       ...+.++.|. +++.- ---.+-+.++|.++.++..+
T Consensus        81 -~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  117 (294)
T 1lc0_A           81 -YIRQFLQAGKHVLVEYPMTLSFAAAQELWELAAQKGR  117 (294)
T ss_dssp             -HHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence             2223344554 55543 12234445667776655443

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.83  E-value=0.0012  Score=61.58  Aligned_cols=104  Identities=19%  Similarity=0.316  Sum_probs=69.9

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEE-EEcCCCCHHHHHhcCcccc-Chhhhcc--CCCEEEEecCCchhhHhhccH
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVI-GFDPMVSVEDAAKLNIASL-GLEDIWP--LADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .++|+|+|+ |++|+.+++.++..|++++ ..+|.....  +..|+... +++++.+  ..|++++++|. +.+...+ +
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~-~   82 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM--EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAA-L   82 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHH-H
T ss_pred             CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc--eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHH-H
Confidence            468999999 9999999999998899854 677754111  13466654 7999988  89999999993 3444443 2


Q ss_pred             HHHhccCCCcE-EEEccCC-cccchHhHHhhhhcCCce
Q psy6348         173 EVLKKCKKGVR-VVNVARG-GIVDENALLDSLKCGHCG  208 (333)
Q Consensus       173 ~~~~~mk~gai-lIN~aRg-~~vd~~aL~~aL~~g~i~  208 (333)
                      +..+   .|.- +|..+.| ..-+++.+.++.++..+.
T Consensus        83 ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           83 EAAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             HHHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2222   3322 5555555 223456788888776554

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.82  E-value=0.00084  Score=64.62  Aligned_cols=66  Identities=18%  Similarity=0.251  Sum_probs=50.2

Q ss_pred             CEEEEEecC-hHHHHHHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCcccc-Chhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLG-RIGREVALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIASL-GLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG-~IG~~vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+| .+|+.++..+... ++++. ++|+....  +.+++.|+... +++++++  +.|+|++++|...
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~   76 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQF   76 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGG
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHH
Confidence            489999999 9999999988775 66766 57886522  33455677644 8999987  4999999999543

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.81  E-value=0.02  Score=54.59  Aligned_cols=131  Identities=15%  Similarity=0.163  Sum_probs=87.3

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM  117 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l  117 (333)
                      +.|...+|+|+|.-+....++-  +++=++.+.++.+                .|..+.|+||++||= +++..+++..+
T Consensus       134 ~lA~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~~~----------------~G~~l~glkva~vGD~~rva~Sl~~~~  195 (339)
T 4a8t_A          134 DLANCATIPVINGMSDYNHPTQ--ELGDLCTMVEHLP----------------EGKKLEDCKVVFVGDATQVCFSLGLIT  195 (339)
T ss_dssp             HHHHHCSSCEEECCCSSCCHHH--HHHHHHHHHHTCC----------------TTCCGGGCEEEEESSCCHHHHHHHHHH
T ss_pred             HHHHhCCCCEEECCCCCcCcHH--HHHHHHHHHHHhh----------------cCCCCCCCEEEEECCCchhHHHHHHHH
Confidence            3456678999999765555543  4444444443321                022588999999986 68889999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH-------HHhcCc--cc-cChhhhccCCCEEEEec--CC-----c-hh----h--Hhhc
Q psy6348         118 QAFGMKVIGFDPMV---SVED-------AAKLNI--AS-LGLEDIWPLADYITVHT--PL-----I-PQ----T--KNLI  170 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~-------a~~~gv--~~-~~l~ell~~aDvV~l~~--P~-----t-~~----t--~~li  170 (333)
                      ..+|++|....|..   ..+.       +++.|.  +. .+++ .++++|+|..-+  ..     . .+    .  .-.+
T Consensus       196 ~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~v  274 (339)
T 4a8t_A          196 TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQV  274 (339)
T ss_dssp             HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCB
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhcccccc
Confidence            99999999998753   2221       234453  33 3788 999999999733  11     0 11    1  1335


Q ss_pred             cHHHHhccCCCcEEEEcc
Q psy6348         171 NAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~a  188 (333)
                      +.+.++.+|++++|..|.
T Consensus       275 t~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          275 NQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             CHHHHHHHCTTCEEEECS
T ss_pred             CHHHHHhcCCCcEEECCC
Confidence            788888889999999984

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=96.80  E-value=0.0088  Score=55.84  Aligned_cols=101  Identities=16%  Similarity=0.145  Sum_probs=72.0

Q ss_pred             hHhhCCcEEEE-CCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHH
Q psy6348          40 AATRKGVLVLN-APGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVAL  115 (333)
Q Consensus        40 aa~~~gI~V~n-~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~  115 (333)
                      .|...+|+|.| .-|....++-  +++=++.+.++                  .| .+.|+||++||=   +++..+++.
T Consensus       108 la~~~~vPVINAG~g~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~gl~va~vGDl~~~rva~Sl~~  166 (291)
T 3d6n_B          108 IVKSLNLRLVNAGDGTHQHPSQ--GLIDFFTIKEH------------------FG-EVKDLRVLYVGDIKHSRVFRSGAP  166 (291)
T ss_dssp             HHHTCSSEEEEEEETTTBCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCTTCHHHHHHHH
T ss_pred             HHHhCCCCEEeCccCCCcCcHH--HHHHHHHHHHH------------------hC-CcCCcEEEEECCCCCCchHHHHHH
Confidence            45567899999 4455556654  33334433331                  11 378999999997   899999999


Q ss_pred             HHhhCCCEEEEEcCCC-CHHHHHhcCcccc-ChhhhccCCCEEEEecCC
Q psy6348         116 RMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLEDIWPLADYITVHTPL  162 (333)
Q Consensus       116 ~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~  162 (333)
                      .+..+|++|....|.. .+....+.|++.. +++|+++++|+|.. +-.
T Consensus       167 ~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~~aDvvy~-~~~  214 (291)
T 3d6n_B          167 LLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGIDWADVVIW-LRL  214 (291)
T ss_dssp             HHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred             HHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence            9999999999988743 1111334576543 89999999999998 654

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.78  E-value=0.0051  Score=59.01  Aligned_cols=129  Identities=19%  Similarity=0.191  Sum_probs=88.9

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHHH
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALRM  117 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l  117 (333)
                      .|.-.+|+|.|.-+....++-  +++=++.+.++                  .| .+.|.+|++||=|  ++..+++..+
T Consensus       139 lA~~s~vPVINa~~~~~HPtQ--aLaDl~Ti~E~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~  197 (359)
T 2w37_A          139 LARDSGVPVWNGLTDEWHPTQ--MLADFMTVKEN------------------FG-KLQGLTLTFMGDGRNNVANSLLVTG  197 (359)
T ss_dssp             HHHHSSSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             HHHhCCCCEEcCCCCCCCccH--HHHHHHHHHHH------------------hC-CcCCeEEEEECCCccchHHHHHHHH
Confidence            445678999998765555654  34444443331                  12 4789999999986  9999999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH---H----HhcCc--cc-cChhhhccCCCEEEEecC----C--chh-----hHhhccHH
Q psy6348         118 QAFGMKVIGFDPMV---SVED---A----AKLNI--AS-LGLEDIWPLADYITVHTP----L--IPQ-----TKNLINAE  173 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~---a----~~~gv--~~-~~l~ell~~aDvV~l~~P----~--t~~-----t~~li~~~  173 (333)
                      ..+|++|....|..   ..+.   +    ++.|.  +. .+++|+++++|+|..-+=    .  ..+     ..-.++.+
T Consensus       198 ~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~e  277 (359)
T 2w37_A          198 AILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNME  277 (359)
T ss_dssp             HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHH
T ss_pred             HHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHH
Confidence            99999999998753   2211   1    24563  33 379999999999988442    0  011     12345788


Q ss_pred             HHhccC---CCcEEEEccC
Q psy6348         174 VLKKCK---KGVRVVNVAR  189 (333)
Q Consensus       174 ~~~~mk---~gailIN~aR  189 (333)
                      .++.+|   ++++|..|.=
T Consensus       278 ll~~ak~~~~dai~MHcLP  296 (359)
T 2w37_A          278 AMKKTGTPDDQLIFMHCLP  296 (359)
T ss_dssp             HHHTTCCCGGGCEEEECSC
T ss_pred             HHHhhCCCCCCEEEECCCC
Confidence            888889   8999999853

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=96.75  E-value=0.0022  Score=61.10  Aligned_cols=64  Identities=28%  Similarity=0.309  Sum_probs=42.9

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEEE-cCCCCH--HHHHhcCcccc------------------ChhhhccCCCEEE
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIGF-DPMVSV--EDAAKLNIASL------------------GLEDIWPLADYIT  157 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~--~~a~~~gv~~~------------------~l~ell~~aDvV~  157 (333)
                      +|||+|+|+||+.+++.+... ++++.+. |+....  ..+.+.|+...                  ++++++.++|+|+
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~   82 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence            799999999999999998764 5777654 554322  22333343221                  2335556799999


Q ss_pred             EecCCc
Q psy6348         158 VHTPLI  163 (333)
Q Consensus       158 l~~P~t  163 (333)
                      .|+|..
T Consensus        83 ~aTp~~   88 (340)
T 1b7g_O           83 DTTPNG   88 (340)
T ss_dssp             ECCSTT
T ss_pred             ECCCCc
Confidence            999843

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=96.74  E-value=0.0024  Score=60.04  Aligned_cols=107  Identities=17%  Similarity=0.185  Sum_probs=73.3

Q ss_pred             ccCCCEEEEE-ec-ChHHHHHHHHHhhCCCEEE-EEcCCCCHHHHHhcCcccc-Chhhhcc--CCCEEEEecCCchhhHh
Q psy6348          95 ELYGKTLAVL-GL-GRIGREVALRMQAFGMKVI-GFDPMVSVEDAAKLNIASL-GLEDIWP--LADYITVHTPLIPQTKN  168 (333)
Q Consensus        95 ~l~gktvGII-Gl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~~t~~  168 (333)
                      -+..+++.|| |+ |+.|+.+++.++..|++++ ..+|....+  +..|+... +++|+.+  ..|++++++|. +....
T Consensus        10 l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~   86 (305)
T 2fp4_A           10 YVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK--THLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAA   86 (305)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHH
T ss_pred             HhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcc--eECCeeeechHHHhhhcCCCCEEEEecCH-HHHHH
Confidence            3566789999 99 9999999999999999954 567753111  13577655 7999988  89999999993 33344


Q ss_pred             hccHHHHhccCCC-cEEEEccCCcc-cchHhHHhhhhcC-Cce
Q psy6348         169 LINAEVLKKCKKG-VRVVNVARGGI-VDENALLDSLKCG-HCG  208 (333)
Q Consensus       169 li~~~~~~~mk~g-ailIN~aRg~~-vd~~aL~~aL~~g-~i~  208 (333)
                      .+ ++..+   .| ..+|+.+-|-. -++..+.+..++. .+.
T Consensus        87 ~~-~e~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           87 AI-NEAID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             HH-HHHHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             HH-HHHHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            43 33322   23 24566777642 3344788888877 654

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.74  E-value=0.0032  Score=62.24  Aligned_cols=71  Identities=10%  Similarity=-0.038  Sum_probs=52.8

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHH---hcCcccc--C-hhhhccCCCEEEEecCCch
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAA---KLNIASL--G-LEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~---~~gv~~~--~-l~ell~~aDvV~l~~P~t~  164 (333)
                      ..++.||++.|||.|.+|.+.++.|...|.+|.++|+....+...   +.++++.  . -++.+.++|+|+.+.. .+
T Consensus         7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~-~~   83 (457)
T 1pjq_A            7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATD-DD   83 (457)
T ss_dssp             EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCS-CH
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCC-CH
Confidence            357889999999999999999999999999999999977554322   1234432  2 2345678998888654 44

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=96.72  E-value=0.002  Score=63.21  Aligned_cols=65  Identities=14%  Similarity=0.231  Sum_probs=50.2

Q ss_pred             CEEEEEec----ChHHHHHHHHHhhC--CCEEE-EEcCCCCH--HHHHhcCcc----ccChhhhcc--CCCEEEEecCCc
Q psy6348          99 KTLAVLGL----GRIGREVALRMQAF--GMKVI-GFDPMVSV--EDAAKLNIA----SLGLEDIWP--LADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGl----G~IG~~vA~~l~~~--G~~V~-~~d~~~~~--~~a~~~gv~----~~~l~ell~--~aDvV~l~~P~t  163 (333)
                      .+|||||+    |.||+..++.++..  +++++ ++|+....  +.+++.|+.    +.++++++.  +.|+|++++|..
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVA  100 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcH
Confidence            58999999    99999999999886  77864 67886532  234556764    348999986  699999999943

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.72  E-value=0.022  Score=54.54  Aligned_cols=131  Identities=14%  Similarity=0.149  Sum_probs=87.0

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRM  117 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l  117 (333)
                      +.|...+|+|+|.-+....++-  +++=++.+.++.+.                |..+.|+||++||= +++..+++..+
T Consensus       112 ~lA~~~~vPVINag~~~~HPtQ--aLaDl~TI~E~~~~----------------G~~l~glkva~vGD~~rva~Sl~~~~  173 (355)
T 4a8p_A          112 DLANCATIPVINGMSDYNHPTQ--ELGDLCTMVEHLPE----------------GKKLEDCKVVFVGDATQVCFSLGLIT  173 (355)
T ss_dssp             HHHHHCSSCEEECCCSSCCHHH--HHHHHHHHHHTCCT----------------TCCGGGCEEEEESCCCHHHHHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHHhhc----------------CCCCCCCEEEEECCCchhHHHHHHHH
Confidence            3456688999999765555543  44444444433210                22478999999986 68889999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH-------HHhcCc--cc-cChhhhccCCCEEEEec----CCc----hh----h--Hhhc
Q psy6348         118 QAFGMKVIGFDPMV---SVED-------AAKLNI--AS-LGLEDIWPLADYITVHT----PLI----PQ----T--KNLI  170 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~-------a~~~gv--~~-~~l~ell~~aDvV~l~~----P~t----~~----t--~~li  170 (333)
                      ..+|++|....|..   +...       +++.|.  +. .+++ .++++|+|..-+    ...    .+    .  .-.+
T Consensus       174 ~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~v  252 (355)
T 4a8p_A          174 TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQV  252 (355)
T ss_dssp             HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCB
T ss_pred             HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhcccccc
Confidence            99999999998753   2221       233453  32 3788 999999999633    100    11    0  1335


Q ss_pred             cHHHHhccCCCcEEEEcc
Q psy6348         171 NAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~a  188 (333)
                      +.+.++.+|++++|..|.
T Consensus       253 t~ell~~ak~dai~MHcL  270 (355)
T 4a8p_A          253 NQEMMDRAGANCKFMHCL  270 (355)
T ss_dssp             CHHHHHHHCTTCEEEECS
T ss_pred             CHHHHHhcCCCcEEECCC
Confidence            778888889999999884

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.71  E-value=0.0042  Score=61.58  Aligned_cols=114  Identities=17%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE--------EcCCC-CHHHH------Hhc-------------Ccccc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG--------FDPMV-SVEDA------AKL-------------NIASL  144 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a------~~~-------------gv~~~  144 (333)
                      |.++.|+|+.|-|+|++|+..|+.|..+|.+|++        |||.- +.+..      ++.             +.+++
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~v  326 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKYF  326 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEEC
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEEe
Confidence            5678999999999999999999999999999984        34432 22211      110             12222


Q ss_pred             Chhhhc-cCCCEEEEecCCchhhHhhccHHHHhcc-CCCc-EEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         145 GLEDIW-PLADYITVHTPLIPQTKNLINAEVLKKC-KKGV-RVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       145 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~m-k~ga-ilIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +.++++ ..||+++-|.     +.+.|+.+....+ +.++ +++-.|-+. ...++ .+.|.+..+. ++=|.
T Consensus       327 ~~~~~~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p-~T~eA-~~~L~~rGIl-~~PD~  391 (470)
T 2bma_A          327 PNEKPWGVPCTLAFPCA-----TQNDVDLDQAKLLQKNGCILVGEGANMP-STVDA-INLFKSNNII-YCPSK  391 (470)
T ss_dssp             SSCCTTSSCCSEEEECS-----STTCBCSHHHHHHHHTTCCEEECCSSSC-BCHHH-HHHHHHTTCE-EECHH
T ss_pred             cCcCeeecCccEEEecc-----ccCcCCHHHHHHHHhcCcEEEEeCCCCC-CCHHH-HHHHHHCCcE-EEChH
Confidence            223333 3688877764     3555666555555 2233 344444444 45555 5666666664 44444

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.71  E-value=0.014  Score=57.13  Aligned_cols=115  Identities=23%  Similarity=0.274  Sum_probs=73.9

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHhh-CCCEEEE--------EcCCC-CHHHHH----hcC-------ccccChhhhc
Q psy6348          92 TGTELYGKTLAVLGLGRIGREVALRMQA-FGMKVIG--------FDPMV-SVEDAA----KLN-------IASLGLEDIW  150 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~IG~~vA~~l~~-~G~~V~~--------~d~~~-~~~~a~----~~g-------v~~~~l~ell  150 (333)
                      .|.++.|+++.|.|+|++|+..|+.|.. .|.+|++        |||.- ..+...    +.+       .+..+.++++
T Consensus       203 ~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil  282 (415)
T 2tmg_A          203 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL  282 (415)
T ss_dssp             TTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHT
T ss_pred             cCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhh
Confidence            3567999999999999999999999998 9999984        33321 222221    112       1233455655


Q ss_pred             -cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccC
Q psy6348         151 -PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF  215 (333)
Q Consensus       151 -~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~  215 (333)
                       .+||+++-|..     .+.++.+....++ -.+++-.+-+.+ ..++ .+.|.+..+. ++=|..
T Consensus       283 ~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~-t~~a-~~~l~~~Gi~-~~PD~~  339 (415)
T 2tmg_A          283 ELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPT-TPEA-DEILSRRGIL-VVPDIL  339 (415)
T ss_dssp             TCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE-EECHHH
T ss_pred             cCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCccc-CHHH-HHHHHHCCCE-EEChHH
Confidence             37999998864     4567777777773 446666666665 3333 3556666554 454443

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=96.70  E-value=0.0074  Score=52.02  Aligned_cols=93  Identities=12%  Similarity=0.135  Sum_probs=59.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc--Chh----hhccCCCEEEEecCCchhhHh---
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL--GLE----DIWPLADYITVHTPLIPQTKN---  168 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~--~l~----ell~~aDvV~l~~P~t~~t~~---  168 (333)
                      ++|.|.|. |.||+.+++.|.+.|++|++.+|..........+++.+  ++.    +.+..+|+|+.+.........   
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~~   80 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISPDEAEKHV   80 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSSTTTTTSHH
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCccccchHH
Confidence            47899995 99999999999999999999999753322111344322  222    577899999988865432111   


Q ss_pred             hccHHHHhccCC--CcEEEEccCCc
Q psy6348         169 LINAEVLKKCKK--GVRVVNVARGG  191 (333)
Q Consensus       169 li~~~~~~~mk~--gailIN~aRg~  191 (333)
                      ......++.|++  ...+|+++...
T Consensus        81 ~~~~~l~~a~~~~~~~~~v~~SS~~  105 (221)
T 3ew7_A           81 TSLDHLISVLNGTVSPRLLVVGGAA  105 (221)
T ss_dssp             HHHHHHHHHHCSCCSSEEEEECCCC
T ss_pred             HHHHHHHHHHHhcCCceEEEEecce
Confidence            111334444543  35677776543

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.69  E-value=0.0018  Score=62.08  Aligned_cols=65  Identities=25%  Similarity=0.355  Sum_probs=47.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC-c---cc---cChhhhccCCCEEEE
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN-I---AS---LGLEDIWPLADYITV  158 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g-v---~~---~~l~ell~~aDvV~l  158 (333)
                      ..+.|++|+|+|.|.+|+.+++.++.+|++|+++|++.......-.. .   .+   ..+.++++++|+|+.
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~   79 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITY   79 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence            34679999999999999999999999999999999875321111001 0   01   125667788999876

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=96.69  E-value=0.0014  Score=63.46  Aligned_cols=66  Identities=17%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhC---------CCEEEE-EcCCCC--HHHHHhcCcc--ccChhhhcc--CCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF---------GMKVIG-FDPMVS--VEDAAKLNIA--SLGLEDIWP--LADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~---------G~~V~~-~d~~~~--~~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~  162 (333)
                      .+|||||+|.||+..+..++..         +.+|.+ +|+...  .+.++++|+.  +.+++++++  +.|+|++++|.
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~  106 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPN  106 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCc
Confidence            3899999999999988877653         456664 687652  2344666764  348999985  58999999995


Q ss_pred             ch
Q psy6348         163 IP  164 (333)
Q Consensus       163 t~  164 (333)
                      ..
T Consensus       107 ~~  108 (412)
T 4gqa_A          107 HL  108 (412)
T ss_dssp             GG
T ss_pred             HH
Confidence            44

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=96.69  E-value=0.0021  Score=60.67  Aligned_cols=66  Identities=17%  Similarity=0.121  Sum_probs=49.4

Q ss_pred             CEEEEEecC-hHHHHHHHHHhhC--CCEE-EEEcCCCCH--HHHHhcCc-c-ccChhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLG-RIGREVALRMQAF--GMKV-IGFDPMVSV--EDAAKLNI-A-SLGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG-~IG~~vA~~l~~~--G~~V-~~~d~~~~~--~~a~~~gv-~-~~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+| .+|+..+..++..  ++++ .++|+....  +.+++.|+ . +.++++++.  +.|+|++++|...
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   94 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVEL   94 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGG
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchH
Confidence            489999999 8999999998876  5676 457886522  23455665 3 348999986  5899999999543

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=96.68  E-value=0.0013  Score=63.51  Aligned_cols=67  Identities=15%  Similarity=0.121  Sum_probs=50.6

Q ss_pred             CCEEEEEecCh---HHHHHHHHHhhCC-CEEEE--EcCCCC--HHHHHhcCcc---c-cChhhhccC-------CCEEEE
Q psy6348          98 GKTLAVLGLGR---IGREVALRMQAFG-MKVIG--FDPMVS--VEDAAKLNIA---S-LGLEDIWPL-------ADYITV  158 (333)
Q Consensus        98 gktvGIIGlG~---IG~~vA~~l~~~G-~~V~~--~d~~~~--~~~a~~~gv~---~-~~l~ell~~-------aDvV~l  158 (333)
                      -.++||||+|.   ||+..+..++..+ +++++  +|+...  .+.++++|+.   . .++++++..       .|+|++
T Consensus        12 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i   91 (398)
T 3dty_A           12 PIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSI   91 (398)
T ss_dssp             CEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEE
T ss_pred             cceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEE
Confidence            35899999999   9999988887655 67764  688653  2345667873   3 389999864       999999


Q ss_pred             ecCCch
Q psy6348         159 HTPLIP  164 (333)
Q Consensus       159 ~~P~t~  164 (333)
                      ++|...
T Consensus        92 ~tp~~~   97 (398)
T 3dty_A           92 ATPNGT   97 (398)
T ss_dssp             ESCGGG
T ss_pred             CCCcHH
Confidence            999543

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=96.68  E-value=0.0032  Score=60.15  Aligned_cols=86  Identities=13%  Similarity=0.105  Sum_probs=53.3

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCC-CEEEEEc--CCCC-HHHHHhcC---------------ccccChhhhcc-CCCEEE
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFG-MKVIGFD--PMVS-VEDAAKLN---------------IASLGLEDIWP-LADYIT  157 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d--~~~~-~~~a~~~g---------------v~~~~l~ell~-~aDvV~  157 (333)
                      .+|||+| .|.||+.+++.|.... ++|.+..  +... .......+               +...+++++++ ++|+|+
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~   88 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF   88 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence            4899999 8999999999997654 6876663  3221 11111111               11124566657 899999


Q ss_pred             EecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      +|+|.. .+.... .   ..++.|+.+|+.+-
T Consensus        89 ~atp~~-~~~~~a-~---~~~~aG~~VId~s~  115 (354)
T 1ys4_A           89 SALPSD-LAKKFE-P---EFAKEGKLIFSNAS  115 (354)
T ss_dssp             ECCCHH-HHHHHH-H---HHHHTTCEEEECCS
T ss_pred             ECCCch-HHHHHH-H---HHHHCCCEEEECCc
Confidence            999832 222221 2   22357888998864

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.67  E-value=0.012  Score=55.80  Aligned_cols=136  Identities=13%  Similarity=0.021  Sum_probs=88.5

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecC--hHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLG--RIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~  116 (333)
                      +.|...+|+|+|.-.....++-  +++=++.+.++..          |..  .....+.|+||++||=|  ++..+++..
T Consensus       116 ~lA~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~~g----------~~~--~~~~~l~gl~va~vGD~~~~va~Sl~~~  181 (328)
T 3grf_A          116 EMAQHASVPCINALDDFGHPLQ--MVCDFMTIKEKFT----------AAG--EFSNGFKGIKFAYCGDSMNNVTYDLMRG  181 (328)
T ss_dssp             HHHHHCSSCEEESSCSSCCHHH--HHHHHHHHHHHHH----------HTT--CCTTTGGGCCEEEESCCSSHHHHHHHHH
T ss_pred             HHHHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHHhC----------Ccc--ccccccCCcEEEEeCCCCcchHHHHHHH
Confidence            3456678999999776655553  3333444333211          100  01235889999999986  888999999


Q ss_pred             HhhCCCEEEEEcCCC-C----HH---HHH----h--cCc--cc-cChhhhccCCCEEEEec----CCch----h-----h
Q psy6348         117 MQAFGMKVIGFDPMV-S----VE---DAA----K--LNI--AS-LGLEDIWPLADYITVHT----PLIP----Q-----T  166 (333)
Q Consensus       117 l~~~G~~V~~~d~~~-~----~~---~a~----~--~gv--~~-~~l~ell~~aDvV~l~~----P~t~----~-----t  166 (333)
                      +..+|++|....|.. .    .+   .++    +  .|.  +. .+++|.++++|+|..-+    ...+    +     .
T Consensus       182 ~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~  261 (328)
T 3grf_A          182 CALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLT  261 (328)
T ss_dssp             HHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHG
T ss_pred             HHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhc
Confidence            999999999988743 2    11   122    2  453  22 38999999999998631    1011    1     1


Q ss_pred             HhhccHHHHhccCCCcEEEEcc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~a  188 (333)
                      .-.++.+.++.+|++++|..|.
T Consensus       262 ~y~vt~~~l~~a~~~ai~mH~l  283 (328)
T 3grf_A          262 PFQVDDAVMAVTSKRSIFMNCL  283 (328)
T ss_dssp             GGCBCHHHHTTSCTTCEEEECS
T ss_pred             CCCCCHHHHHhcCCCCEEECCC
Confidence            1236888899999999999984

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.67  E-value=0.0033  Score=59.66  Aligned_cols=90  Identities=24%  Similarity=0.275  Sum_probs=64.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Ch------h-hhccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GL------E-DIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l------~-ell~~aDvV~l~~P~t~~t~  167 (333)
                      .|++|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+ +.      . ++....|+|+-+++.++  .
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~--~  256 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT--D  256 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST--T
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCc--H
Confidence            48899999999999999999999999999999766 4566777776432 21      1 12246899988886420  0


Q ss_pred             hhccHHHHhccCCCcEEEEccC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aR  189 (333)
                      . .-...++.++++..++.++.
T Consensus       257 ~-~~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          257 I-DFNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             C-CTTTGGGGEEEEEEEEECCC
T ss_pred             H-HHHHHHHHhcCCCEEEEecC
Confidence            1 11345567888888888754

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.65  E-value=0.0051  Score=60.53  Aligned_cols=86  Identities=17%  Similarity=0.257  Sum_probs=63.7

Q ss_pred             cCCCEEEEEecCh----------HHHHHHHHHhhC-CCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCch
Q psy6348          96 LYGKTLAVLGLGR----------IGREVALRMQAF-GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        96 l~gktvGIIGlG~----------IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~  164 (333)
                      +.|++|+|+|+--          -...+++.|... |.+|.+|||....+      ....++++.+++||.|+++++ .+
T Consensus       313 ~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------~~~~~~~~~~~~ad~vvi~t~-~~  385 (431)
T 3ojo_A          313 LSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------FVEHDMSHAVKDASLVLILSD-HS  385 (431)
T ss_dssp             SSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------TBCSTTHHHHTTCSEEEECSC-CG
T ss_pred             cCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------cccCCHHHHHhCCCEEEEecC-CH
Confidence            5899999999842          467899999999 99999999987542      223478899999999999987 34


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCc
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      +-+.+ +.+.++.|+ +.+++|. |+-
T Consensus       386 ~f~~~-d~~~~~~~~-~~~i~D~-r~~  409 (431)
T 3ojo_A          386 EFKNL-SDSHFDKMK-HKVIFDT-KNV  409 (431)
T ss_dssp             GGTSC-CGGGGTTCS-SCEEEES-SCC
T ss_pred             HHhcc-CHHHHHhCC-CCEEEEC-CCC
Confidence            43333 333446676 6788885 443

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=96.64  E-value=0.0016  Score=62.08  Aligned_cols=65  Identities=12%  Similarity=0.106  Sum_probs=48.3

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEE-EEcCCCCHHHHHhc-Cccc-cChhhhccC--CCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVI-GFDPMVSVEDAAKL-NIAS-LGLEDIWPL--ADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~~~a~~~-gv~~-~~l~ell~~--aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+. .+..++.. +++|. ++|+.... .+++. ++.. .++++++.+  .|+|++|+|...
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~   77 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL-SKERYPQASIVRSFKELTEDPEIDLIVVNTPDNT   77 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG-GGTTCTTSEEESCSHHHHTCTTCCEEEECSCGGG
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHHhCCCCceECCHHHHhcCCCCCEEEEeCChHH
Confidence            48999999999997 67777665 77876 56877543 23344 4443 489999976  999999999543

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.64  E-value=0.0028  Score=60.06  Aligned_cols=65  Identities=29%  Similarity=0.317  Sum_probs=46.2

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEE-EcCCCCH--HHHHhcCcc------------------c-cChhhhccCCCEE
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIG-FDPMVSV--EDAAKLNIA------------------S-LGLEDIWPLADYI  156 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~--~~a~~~gv~------------------~-~~l~ell~~aDvV  156 (333)
                      ++||+|+|.||+.+++.+... ++++.+ +|+....  ..++..|+.                  . .++++++.++|+|
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV   83 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII   83 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence            899999999999999998765 567655 4654322  223333321                  1 2678888899999


Q ss_pred             EEecCCch
Q psy6348         157 TVHTPLIP  164 (333)
Q Consensus       157 ~l~~P~t~  164 (333)
                      +.|+|...
T Consensus        84 ~~aTp~~~   91 (334)
T 2czc_A           84 VDATPGGI   91 (334)
T ss_dssp             EECCSTTH
T ss_pred             EECCCccc
Confidence            99999543

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.64  E-value=0.0071  Score=60.15  Aligned_cols=101  Identities=20%  Similarity=0.181  Sum_probs=69.5

Q ss_pred             ccCCCEEEEEecC----------hHHHHHHHHHhhCCCEEEEEcCCCCHHHH----Hh-cC-------ccc-cChhhhcc
Q psy6348          95 ELYGKTLAVLGLG----------RIGREVALRMQAFGMKVIGFDPMVSVEDA----AK-LN-------IAS-LGLEDIWP  151 (333)
Q Consensus        95 ~l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a----~~-~g-------v~~-~~l~ell~  151 (333)
                      .+.|++|+|+|+-          .-...+++.|...|.+|.+|||....+.+    .+ ++       +.+ .++.+.++
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  411 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAAR  411 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHT
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHc
Confidence            4789999999974          35678899999999999999998754322    11 11       333 25678899


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhH
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL  198 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL  198 (333)
                      ++|.|++++.- ++-+.+=-....+.|+...++++. |+ ++|.+.+
T Consensus       412 ~ad~~vi~t~~-~~f~~~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~  455 (481)
T 2o3j_A          412 GAHAIVVLTEW-DEFVELNYSQIHNDMQHPAAIFDG-RL-ILDQKAL  455 (481)
T ss_dssp             TCSEEEECSCC-GGGTTSCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred             CCCEEEEcCCc-HHhhccCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence            99999999873 343433223445568776688886 54 3454443

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=96.64  E-value=0.0018  Score=62.53  Aligned_cols=65  Identities=15%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhhC--CCEEEE-EcCCCC--HHHHHhcCcccc-ChhhhccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAF--GMKVIG-FDPMVS--VEDAAKLNIASL-GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t  163 (333)
                      -.+|||||.| +|+.-++.++..  ++++.+ +|+...  .+.++++|+... ++++++.+.|++++++|..
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~   77 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRST   77 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--
T ss_pred             CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCc
Confidence            3589999999 799888877765  678775 687663  345677888654 8999999999999999954

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=96.63  E-value=0.0023  Score=62.32  Aligned_cols=66  Identities=12%  Similarity=0.181  Sum_probs=49.1

Q ss_pred             CEEEEEecCh---HHHHHHHHHhhCC-CEEE--EEcCCCC--HHHHHhcCcc---c-cChhhhccC-------CCEEEEe
Q psy6348          99 KTLAVLGLGR---IGREVALRMQAFG-MKVI--GFDPMVS--VEDAAKLNIA---S-LGLEDIWPL-------ADYITVH  159 (333)
Q Consensus        99 ktvGIIGlG~---IG~~vA~~l~~~G-~~V~--~~d~~~~--~~~a~~~gv~---~-~~l~ell~~-------aDvV~l~  159 (333)
                      .+|||||+|.   ||+..+..++..+ ++++  ++|+...  .+.++++|+.   . .+++++++.       .|+|+++
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~  117 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIV  117 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEEC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEEC
Confidence            4899999999   9999988877665 6776  4688653  2344567773   3 489999875       9999999


Q ss_pred             cCCch
Q psy6348         160 TPLIP  164 (333)
Q Consensus       160 ~P~t~  164 (333)
                      +|...
T Consensus       118 tp~~~  122 (417)
T 3v5n_A          118 TPNHV  122 (417)
T ss_dssp             SCTTS
T ss_pred             CCcHH
Confidence            99644

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=96.63  E-value=0.0027  Score=59.61  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=66.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHH--HHhc--------Cccc-cChhhhccCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVED--AAKL--------NIAS-LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~--a~~~--------gv~~-~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      +||+|||.|.+|..++..+...+  -++..||.......  +.++        .+.. .+-.+.+++||+|+++.+....
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            48999999999999999888766  48999998642111  1111        1111 1346779999999999864321


Q ss_pred             ---h--------Hhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEE
Q psy6348         166 ---T--------KNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGA  210 (333)
Q Consensus       166 ---t--------~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~ga  210 (333)
                         +        ..++.  .+.+....|++++++++-.--+....+.+.  +...++.|.
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv~~~t~~~~k~s~~p~~rviG~  140 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPVDVMTQVAYALSGLPPGRVVGS  140 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCGGGEEEC
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCchHHHHHHHHHHcCCCHHHEEec
Confidence               0        11110  112233478999999854333333334333  334466555

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=96.59  E-value=0.0036  Score=58.53  Aligned_cols=65  Identities=20%  Similarity=0.274  Sum_probs=48.4

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEE-EEcCCCCHHHH-Hhc-Cccc-cChhhhc----------cCCCEEEEecCCc
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVI-GFDPMVSVEDA-AKL-NIAS-LGLEDIW----------PLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~-~~d~~~~~~~a-~~~-gv~~-~~l~ell----------~~aDvV~l~~P~t  163 (333)
                      .++||||+ |.||+..++.++..+.+++ ++|+......+ +.. +... .++++++          .+.|+|++++|..
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~   83 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNH   83 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCch
Confidence            58999999 7899999999998898865 46877644322 222 3333 3788887          6799999999954

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=96.59  E-value=0.0082  Score=56.40  Aligned_cols=96  Identities=18%  Similarity=0.241  Sum_probs=61.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCC--CEEEEEcCCCCHHHHHhcC-------ccc----cChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFG--MKVIGFDPMVSVEDAAKLN-------IAS----LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g-------v~~----~~l~ell~~aDvV~l~~P~t~  164 (333)
                      .||+|||. |.+|..++..|...|  .+|..+|.......+.++.       +..    .++++.+++||+|+++.+...
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~   80 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence            37999998 999999999998777  6899999865222222221       111    146778999999999975321


Q ss_pred             h---hH--------hhcc--HHHHhccCCCcEEEEccCCcccchH
Q psy6348         165 Q---TK--------NLIN--AEVLKKCKKGVRVVNVARGGIVDEN  196 (333)
Q Consensus       165 ~---t~--------~li~--~~~~~~mk~gailIN~aRg~~vd~~  196 (333)
                      .   ++        .++.  .+.+....|++++|++  ..++|.-
T Consensus        81 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~  123 (314)
T 1mld_A           81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNST  123 (314)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchh
Confidence            1   10        1110  1122233588899997  4456654

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=96.57  E-value=0.0036  Score=58.69  Aligned_cols=66  Identities=20%  Similarity=0.224  Sum_probs=48.4

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEE-EcCCCCHHHH-Hhc-Cccc-cChhhhc-----------cCCCEEEEecCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIG-FDPMVSVEDA-AKL-NIAS-LGLEDIW-----------PLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~a-~~~-gv~~-~~l~ell-----------~~aDvV~l~~P~  162 (333)
                      .++||||+ |.||+..++.++..|.++++ +|+......+ +.. +... .++++++           .+.|+|++++|.
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~   83 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPN   83 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCG
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCc
Confidence            58999999 79999999999988987654 6877643322 222 3333 3788876           579999999995


Q ss_pred             ch
Q psy6348         163 IP  164 (333)
Q Consensus       163 t~  164 (333)
                      ..
T Consensus        84 ~~   85 (318)
T 3oa2_A           84 YL   85 (318)
T ss_dssp             GG
T ss_pred             HH
Confidence            43

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.56  E-value=0.0057  Score=52.02  Aligned_cols=65  Identities=15%  Similarity=0.071  Sum_probs=46.9

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHH-hcCccc--------cChhhhccCCCEEEEecCC
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAA-KLNIAS--------LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~-~~gv~~--------~~l~ell~~aDvV~l~~P~  162 (333)
                      ++++.|.|. |.||+.+++.|.+.|++|++.++........ ..+++.        .++.++++++|+|+.+...
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            479999998 9999999999999999999999864221100 112221        1355678889998887764

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.55  E-value=0.017  Score=54.72  Aligned_cols=128  Identities=19%  Similarity=0.115  Sum_probs=85.0

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-ChHHHHHHHHHh
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-GRIGREVALRMQ  118 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~l~  118 (333)
                      .|...+|+|+|.-.....++-  +++=++.+.++                  .| .+.|+||++||= +++..+++..+.
T Consensus       120 lA~~~~vPVINag~~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~glkva~vGD~~rva~Sl~~~~~  178 (323)
T 3gd5_A          120 YAHYAGIPVINALTDHEHPCQ--VVADLLTIREN------------------FG-RLAGLKLAYVGDGNNVAHSLLLGCA  178 (323)
T ss_dssp             HHHHHCSCEEEEECSSCCHHH--HHHHHHHHHHH------------------HS-CCTTCEEEEESCCCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCCcHH--HHHHHHHHHHH------------------hC-CCCCCEEEEECCCCcHHHHHHHHHH
Confidence            345568999998665544543  33333333221                  12 378999999996 688899999999


Q ss_pred             hCCCEEEEEcCCC---CHHH-------HHhcCc--cc-cChhhhccCCCEEEEecCCch----------h--hHhhccHH
Q psy6348         119 AFGMKVIGFDPMV---SVED-------AAKLNI--AS-LGLEDIWPLADYITVHTPLIP----------Q--TKNLINAE  173 (333)
Q Consensus       119 ~~G~~V~~~d~~~---~~~~-------a~~~gv--~~-~~l~ell~~aDvV~l~~P~t~----------~--t~~li~~~  173 (333)
                      .+|++|....|..   ..+.       +++.|.  +. .+++|+++++|+|..-.=-..          +  ..-.++.+
T Consensus       179 ~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~e  258 (323)
T 3gd5_A          179 KVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAA  258 (323)
T ss_dssp             HHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCCC---------CCHHHHTTCCBCHH
T ss_pred             HcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCCHH
Confidence            9999999988753   2221       123453  33 389999999999987542111          0  01246888


Q ss_pred             HHhccCCCcEEEEcc
Q psy6348         174 VLKKCKKGVRVVNVA  188 (333)
Q Consensus       174 ~~~~mk~gailIN~a  188 (333)
                      .++.+|++++|..|.
T Consensus       259 ll~~ak~dai~mHcl  273 (323)
T 3gd5_A          259 LLNCAAAEAIVLHCL  273 (323)
T ss_dssp             HHHTSCTTCEEEECS
T ss_pred             HHhhcCCCcEEECCC
Confidence            888899999999984

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.55  E-value=0.0033  Score=59.08  Aligned_cols=88  Identities=19%  Similarity=0.212  Sum_probs=61.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-C-----hhhh----ccCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-G-----LEDI----WPLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~-----l~el----l~~aDvV~l~~P~t~~  165 (333)
                      .|+++.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|...+ +     +.+.    ....|+|+-++...+.
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            47899999999999999999999999999999865 3345566675321 1     1111    1357888877753221


Q ss_pred             hHhhccHHHHhccCCCcEEEEccC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aR  189 (333)
                           -...++.|+++..++.++.
T Consensus       244 -----~~~~~~~l~~~G~~v~~g~  262 (339)
T 1rjw_A          244 -----FQSAYNSIRRGGACVLVGL  262 (339)
T ss_dssp             -----HHHHHHHEEEEEEEEECCC
T ss_pred             -----HHHHHHHhhcCCEEEEecc
Confidence                 1445667788888887754

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.55  E-value=0.0038  Score=59.67  Aligned_cols=88  Identities=19%  Similarity=0.226  Sum_probs=62.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-C------hhhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-G------LEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~------l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+ +      .+++....|+|+-++.....   
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~---  270 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN---  270 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC---
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHH---
Confidence            48899999999999999999999999999999765 4456667776421 1      22333467888877763211   


Q ss_pred             hccHHHHhccCCCcEEEEccC
Q psy6348         169 LINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aR  189 (333)
                        -...++.|+++..++.++.
T Consensus       271 --~~~~~~~l~~~G~iv~~G~  289 (369)
T 1uuf_A          271 --LDDFTTLLKRDGTMTLVGA  289 (369)
T ss_dssp             --HHHHHTTEEEEEEEEECCC
T ss_pred             --HHHHHHHhccCCEEEEecc
Confidence              1345667777777777753

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.54  E-value=0.029  Score=53.85  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=87.4

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec--ChHHHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL--GRIGREVALR  116 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl--G~IG~~vA~~  116 (333)
                      +.+...+|+|.|.-|...-++-  +++=++.+.++                 +.+..+.|++|++||=  +++..+.+..
T Consensus       141 ~la~~s~vPVING~g~~~HPtQ--aL~Dl~Ti~e~-----------------~~~~~l~gl~ia~vGD~~~~va~S~~~~  201 (358)
T 4h31_A          141 ELGAFAGVPVWNGLTDEFHPTQ--ILADFLTMLEH-----------------SQGKALADIQFAYLGDARNNVGNSLMVG  201 (358)
T ss_dssp             HHHHHSSSCEEESCCSSCCHHH--HHHHHHHHHHT-----------------TTTCCGGGCEEEEESCTTSHHHHHHHHH
T ss_pred             HhhhhccCceECCCCcCCCchH--HHHHHHHHHHH-----------------hcCCCcCceEEEecCCCCcccchHHHHH
Confidence            3456688999997666555654  44444443321                 2235688999999995  4899999999


Q ss_pred             HhhCCCEEEEEcCCC---CHH-------HHHhcCccc---cChhhhccCCCEEEEecCCc----hhh---------Hhhc
Q psy6348         117 MQAFGMKVIGFDPMV---SVE-------DAAKLNIAS---LGLEDIWPLADYITVHTPLI----PQT---------KNLI  170 (333)
Q Consensus       117 l~~~G~~V~~~d~~~---~~~-------~a~~~gv~~---~~l~ell~~aDvV~l~~P~t----~~t---------~~li  170 (333)
                      +..+|++|....|..   ..+       .+.+.|..+   .+++|.++++|+|..-+=..    ++.         .--+
T Consensus       202 ~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v  281 (358)
T 4h31_A          202 AAKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQV  281 (358)
T ss_dssp             HHHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCB
T ss_pred             HHhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCccc
Confidence            999999999998743   221       123345432   37999999999998533211    111         1125


Q ss_pred             cHHHHhc-cCCCcEEEEcc
Q psy6348         171 NAEVLKK-CKKGVRVVNVA  188 (333)
Q Consensus       171 ~~~~~~~-mk~gailIN~a  188 (333)
                      +.+.++. .|++++|..|.
T Consensus       282 ~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          282 NMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             CHHHHHHTTCTTCEEEECS
T ss_pred             CHHHHHhcCCCCcEEECCC
Confidence            7777775 47899999984

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.54  E-value=0.0059  Score=58.55  Aligned_cols=86  Identities=14%  Similarity=0.220  Sum_probs=54.9

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCC-CEEEEEcCCCCH--HHHHhc----C-----ccccChhhhccCCCEEEEecCCc
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFG-MKVIGFDPMVSV--EDAAKL----N-----IASLGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~--~~a~~~----g-----v~~~~l~ell~~aDvV~l~~P~t  163 (333)
                      ...+|+|+| +|.||+.+++.|.... +++.+.....+.  .....+    +     +...+ ++.+.++|+|++|+|..
T Consensus        15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~   93 (359)
T 1xyg_A           15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHG   93 (359)
T ss_dssp             CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTT
T ss_pred             cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCch
Confidence            346899999 8999999999998765 487777543321  111111    1     11113 55667899999999843


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      ..      .+.....+.|+.+|+.+.
T Consensus        94 ~s------~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           94 TT------QEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             TH------HHHHHTSCTTCEEEECSS
T ss_pred             hH------HHHHHHHhCCCEEEECCc
Confidence            22      222222277899999875

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.54  E-value=0.007  Score=59.31  Aligned_cols=112  Identities=24%  Similarity=0.224  Sum_probs=66.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE--------EcCCC-CHHHHHhc----Cc------------ccc-Ch
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG--------FDPMV-SVEDAAKL----NI------------ASL-GL  146 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a~~~----gv------------~~~-~l  146 (333)
                      |.++.|+++.|.|+|++|+.+|+.|..+|.+|++        |||.- +.+...++    |.            +.+ +.
T Consensus       205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~~~~~~~~  284 (421)
T 1v9l_A          205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP  284 (421)
T ss_dssp             HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccCceEeCCc
Confidence            5578999999999999999999999999999984        33321 22222221    11            222 33


Q ss_pred             hhhcc-CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348         147 EDIWP-LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD  213 (333)
Q Consensus       147 ~ell~-~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD  213 (333)
                      ++++. .||+++-|.     +.+.|+.+....++- .+++-.+-+.+ ..+ -.+.|.+..+. ++=|
T Consensus       285 ~~~~~~~~Dil~P~A-----~~~~I~~~~a~~l~a-k~V~EgAN~p~-t~~-a~~~l~~~Gi~-~~PD  343 (421)
T 1v9l_A          285 DAIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPE-AERILYERGVV-VVPD  343 (421)
T ss_dssp             TGGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHH-HHHHHHTTTCE-EECH
T ss_pred             hhhhcCCccEEEecC-----cCCccchhhHHHcCc-eEEEecCCCcC-CHH-HHHHHHHCCCE-EeCh
Confidence            44443 577777664     345566666555632 34555555554 333 23455555554 3433

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=96.54  E-value=0.011  Score=51.11  Aligned_cols=92  Identities=15%  Similarity=0.129  Sum_probs=57.5

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHH-HHhcCcccc--Chh----hhccCCCEEEEecCCc--h--hh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVED-AAKLNIASL--GLE----DIWPLADYITVHTPLI--P--QT  166 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~gv~~~--~l~----ell~~aDvV~l~~P~t--~--~t  166 (333)
                      ++|.|.|. |.||+.+++.|.+.|++|++.++...... ....+++.+  ++.    +.+..+|+|+.+....  +  ..
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~~~~~~   80 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSVPWGSGRGY   80 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTTSSCTH
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCccCCCcchhh
Confidence            46899998 99999999999999999999998642211 111344332  222    5678999999887542  0  01


Q ss_pred             Hhh-ccHHHHhccC-CCcEEEEccCC
Q psy6348         167 KNL-INAEVLKKCK-KGVRVVNVARG  190 (333)
Q Consensus       167 ~~l-i~~~~~~~mk-~gailIN~aRg  190 (333)
                      .++ .....++.|+ .|..+|+++..
T Consensus        81 ~n~~~~~~l~~a~~~~~~~~v~~SS~  106 (224)
T 3h2s_A           81 LHLDFATHLVSLLRNSDTLAVFILGS  106 (224)
T ss_dssp             HHHHHHHHHHHTCTTCCCEEEEECCG
T ss_pred             HHHHHHHHHHHHHHHcCCcEEEEecc
Confidence            111 1233444443 24667777553

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.53  E-value=0.0025  Score=60.09  Aligned_cols=87  Identities=20%  Similarity=0.105  Sum_probs=59.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Chhhhc------cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GLEDIW------PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l~ell------~~aDvV~l~~P~  162 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|...+      ++.+.+      ...|+|+-++..
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            78999999999999999999999999 999999865 2345566665321      111111      147777777653


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .+.     -...++.++++..++.++
T Consensus       247 ~~~-----~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          247 PKA-----LEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             HHH-----HHHHHHHEEEEEEEEECC
T ss_pred             HHH-----HHHHHHHHhcCCEEEEEc
Confidence            211     134456677777777764

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.53  E-value=0.007  Score=58.41  Aligned_cols=89  Identities=22%  Similarity=0.169  Sum_probs=62.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Chh----hhc--cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GLE----DIW--PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l~----ell--~~aDvV~l~~P~  162 (333)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|...+      ++.    ++.  ...|+|+-++..
T Consensus       213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~  292 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV  292 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 999999765 3456677886432      121    122  258999988874


Q ss_pred             chhhHhhccHHHHhcc----CCCcEEEEccC
Q psy6348         163 IPQTKNLINAEVLKKC----KKGVRVVNVAR  189 (333)
Q Consensus       163 t~~t~~li~~~~~~~m----k~gailIN~aR  189 (333)
                      ...+.    ...++.+    +++..++.++-
T Consensus       293 ~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          293 PQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             HHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             cHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            32222    2233334    88888888864

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=96.53  E-value=0.0062  Score=58.05  Aligned_cols=85  Identities=16%  Similarity=0.106  Sum_probs=53.5

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCC-CEEEEEcCCCCHH-HHHh--------cCccccChhhhccCCCEEEEecCCchhhH
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFG-MKVIGFDPMVSVE-DAAK--------LNIASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~-~a~~--------~gv~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .+|||+| .|.||+.+.+.|.... +++.+.....+.. ...+        ......++++ +.++|+|++|+|.... +
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~s-~   82 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGVF-A   82 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTHH-H
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHHH-H
Confidence            5899999 7999999999998654 4777654432211 1110        1112224444 5789999999995432 2


Q ss_pred             hhccHHHHhccCCCcEEEEccC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aR  189 (333)
                      ... .   ..++.|+.+|+.+-
T Consensus        83 ~~a-~---~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           83 REF-D---RYSALAPVLVDLSA  100 (345)
T ss_dssp             HTH-H---HHHTTCSEEEECSS
T ss_pred             HHH-H---HHHHCCCEEEEcCc
Confidence            221 1   22467889999875

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=96.53  E-value=0.0034  Score=58.88  Aligned_cols=89  Identities=19%  Similarity=0.241  Sum_probs=56.6

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHH--Hh-------c--C--ccc-cChhhhccCCCEEEEecCCch
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDA--AK-------L--N--IAS-LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a--~~-------~--g--v~~-~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ||+|||.|.||..+|..+...|+ +|..||........  .+       .  .  +.. .+. +.+++||+|+++.+...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999988876677 79999987532211  11       1  2  122 244 67999999999966432


Q ss_pred             -----------hhHhhcc--HHHHhccCCCcEEEEccC
Q psy6348         165 -----------QTKNLIN--AEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       165 -----------~t~~li~--~~~~~~mk~gailIN~aR  189 (333)
                                 .+..++.  -+.+....|++++|+++-
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence                       1111111  112223358999999854

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=96.52  E-value=0.0043  Score=60.83  Aligned_cols=66  Identities=17%  Similarity=0.128  Sum_probs=48.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEE-EEcCCCCH-HHH-H---hcC---cc-cc----Chhhhcc--CCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVI-GFDPMVSV-EDA-A---KLN---IA-SL----GLEDIWP--LADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~-~~d~~~~~-~~a-~---~~g---v~-~~----~l~ell~--~aDvV~l~~P  161 (333)
                      .+|||||+|.||+..+..+... |++|. ++|+.... +.. +   +.|   .. +.    +++++++  +.|+|++++|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp  100 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP  100 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence            4899999999999999988875 67765 67886532 221 1   235   23 34    7999997  5899999999


Q ss_pred             Cch
Q psy6348         162 LIP  164 (333)
Q Consensus       162 ~t~  164 (333)
                      ...
T Consensus       101 ~~~  103 (444)
T 2ixa_A          101 WEW  103 (444)
T ss_dssp             GGG
T ss_pred             cHH
Confidence            543

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.50  E-value=0.0084  Score=56.46  Aligned_cols=127  Identities=19%  Similarity=0.200  Sum_probs=83.0

Q ss_pred             HhhC-CcEEEECCC-CCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHH
Q psy6348          41 ATRK-GVLVLNAPG-GNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVAL  115 (333)
Q Consensus        41 a~~~-gI~V~n~p~-~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~  115 (333)
                      |..- +|+|+|.-. ....++-  +++=++.+.++                  .| .+.|+||++||=   |++..+++.
T Consensus       116 a~~~~~vPVINag~G~~~HPtQ--aLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~~rva~Sl~~  174 (310)
T 3csu_A          116 TEFSGNVPVLNAGDGSNQHPTQ--TLLDLFTIQET------------------QG-RLDNLHVAMVGDLKYGRTVHSLTQ  174 (310)
T ss_dssp             HHHCTTCCEEEEEETTSCCHHH--HHHHHHHHHHH------------------HS-CSSSCEEEEESCTTTCHHHHHHHH
T ss_pred             HHhcCCCCEEcCccCCCCCchH--HHHHHHHHHHH------------------hC-CcCCcEEEEECCCCCCchHHHHHH
Confidence            4445 799999853 4555554  33334433331                  11 378999999998   599999999


Q ss_pred             HHhhC-CCEEEEEcCCC---CH---HHHHhcCccc---cChhhhccCCCEEEEecCCch-----hh-----HhhccHHHH
Q psy6348         116 RMQAF-GMKVIGFDPMV---SV---EDAAKLNIAS---LGLEDIWPLADYITVHTPLIP-----QT-----KNLINAEVL  175 (333)
Q Consensus       116 ~l~~~-G~~V~~~d~~~---~~---~~a~~~gv~~---~~l~ell~~aDvV~l~~P~t~-----~t-----~~li~~~~~  175 (333)
                      .+..+ |++|....|..   ..   +.+++.|..+   .+++|+++++|+|..-.=-.+     +.     .-.++.+.+
T Consensus       175 ~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll  254 (310)
T 3csu_A          175 ALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDL  254 (310)
T ss_dssp             HHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-----------------CCBCGGGG
T ss_pred             HHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCHHHHHHHhhccCCCHHHH
Confidence            99999 99999988743   22   2233446542   379999999999987643111     00     123466667


Q ss_pred             hccCCCcEEEEcc
Q psy6348         176 KKCKKGVRVVNVA  188 (333)
Q Consensus       176 ~~mk~gailIN~a  188 (333)
                      +.+|+++++..|.
T Consensus       255 ~~a~~~ai~mH~l  267 (310)
T 3csu_A          255 HNAKANMKVLHPL  267 (310)
T ss_dssp             TTCCTTCEEECCS
T ss_pred             hhcCCCCEEECCC
Confidence            7777777777773

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=96.49  E-value=0.0069  Score=49.25  Aligned_cols=98  Identities=19%  Similarity=0.122  Sum_probs=69.6

Q ss_pred             CEEEEEec----ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      ++++|||.    ++.|..+.+.|+..|++|+..+|....    -.|... .++.++-. -|++++++| .+.+..++.+ 
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v~e-   77 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----VLGKTIINERPVIEG-VDTVTLYIN-PQNQLSEYNY-   77 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----ETTEECBCSCCCCTT-CCEEEECSC-HHHHGGGHHH-
T ss_pred             CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----CCCeeccCChHHCCC-CCEEEEEeC-HHHHHHHHHH-
Confidence            68999998    679999999999999999999996422    235543 37888877 999999999 3455555533 


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ..+ +...+++++.  |-  .++++.+..++..++
T Consensus        78 ~~~-~g~k~v~~~~--G~--~~~e~~~~a~~~Gir  107 (122)
T 3ff4_A           78 ILS-LKPKRVIFNP--GT--ENEELEEILSENGIE  107 (122)
T ss_dssp             HHH-HCCSEEEECT--TC--CCHHHHHHHHHTTCE
T ss_pred             HHh-cCCCEEEECC--CC--ChHHHHHHHHHcCCe
Confidence            322 3444666554  32  356777777777665

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.49  E-value=0.011  Score=57.42  Aligned_cols=92  Identities=18%  Similarity=0.147  Sum_probs=67.7

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh-
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK-  176 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~-  176 (333)
                      -.++-|+|.|.+|+.+++.++.+|++|+++|++...          .+ .+-+..+|-++...|     ...+..  +. 
T Consensus       204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~----------~~-~~~fp~a~~~~~~~p-----~~~~~~--~~~  265 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVF----------AT-TARFPTADEVVVDWP-----HRYLAA--QAE  265 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTT----------SC-TTTCSSSSEEEESCH-----HHHHHH--HHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhh----------cc-cccCCCceEEEeCCh-----HHHHHh--hcc
Confidence            458999999999999999999999999999986521          11 223456765555444     111111  11 


Q ss_pred             --ccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         177 --KCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       177 --~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                        .+.+++.+|=+.++.-.|...|..+|+++..
T Consensus       266 ~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~  298 (386)
T 2we8_A          266 AGAIDARTVVCVLTHDPKFDVPLLEVALRLPDI  298 (386)
T ss_dssp             HTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCC
T ss_pred             ccCCCCCcEEEEEECChHhHHHHHHHHhcCCCC
Confidence              2678889999999999999999999998733

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.49  E-value=0.012  Score=55.90  Aligned_cols=88  Identities=23%  Similarity=0.305  Sum_probs=62.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCccc-cC-------hhhhc-----cCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIAS-LG-------LEDIW-----PLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~-~~-------l~ell-----~~aDvV~l~~P  161 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|... ++       +.+.+     ...|+|+-++.
T Consensus       192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  271 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG  271 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 899999766 446667777642 12       22222     14788888775


Q ss_pred             CchhhHhhccHHHHhccCCC-cEEEEccC
Q psy6348         162 LIPQTKNLINAEVLKKCKKG-VRVVNVAR  189 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~g-ailIN~aR  189 (333)
                      ..+.     -...+..++++ ..++.++-
T Consensus       272 ~~~~-----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          272 NVGV-----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CHHH-----HHHHHHTBCTTTCEEEECSC
T ss_pred             CHHH-----HHHHHHHhhcCCcEEEEEcC
Confidence            3211     14556778887 77777753

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=96.48  E-value=0.0068  Score=56.60  Aligned_cols=113  Identities=16%  Similarity=0.116  Sum_probs=65.6

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCCC--EEEEEcC--CCCHHH--HHhc--------Ccccc-ChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFGM--KVIGFDP--MVSVED--AAKL--------NIASL-GLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~--~~~~~~--a~~~--------gv~~~-~l~ell~~aDvV~l~~P~  162 (333)
                      .||+|+| .|.+|+.++..|...|.  ++..+|.  ......  +.++        .+... +..+.+++||+|+++...
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~   80 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence            4899999 99999999999887665  7888998  431111  1111        01110 235679999999999763


Q ss_pred             chh---hHh-h------ccH---HHHhccCCCcEEEEccCCcccchHhHHhh--hhcCCceEEE
Q psy6348         163 IPQ---TKN-L------INA---EVLKKCKKGVRVVNVARGGIVDENALLDS--LKCGHCGGAA  211 (333)
Q Consensus       163 t~~---t~~-l------i~~---~~~~~mk~gailIN~aRg~~vd~~aL~~a--L~~g~i~gaa  211 (333)
                      ...   ++. +      +-+   +.+....+++++++.+-.--+....+.+.  +...++.|.+
T Consensus        81 ~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv~~~~~~~~~~~~~p~~rviG~g  144 (303)
T 1o6z_A           81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPVDLLNRHLYEAGDRSREQVIGFG  144 (303)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSHHHHHHHHHHHSSSCGGGEEECC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHHcCCCHHHeeecc
Confidence            321   110 0      111   22233467899999754433333444343  4444666663

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=96.48  E-value=0.0014  Score=60.76  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=36.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS  132 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  132 (333)
                      ..++.|+++.|||.|.+|...++.|...|.+|++++|...
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            4578999999999999999999999999999999998654

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=96.47  E-value=0.0019  Score=61.17  Aligned_cols=66  Identities=12%  Similarity=0.077  Sum_probs=47.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--------CCEEE-EEcCCCCH--HHHHhcCcc--ccChhhhcc--CCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--------GMKVI-GFDPMVSV--EDAAKLNIA--SLGLEDIWP--LADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--------G~~V~-~~d~~~~~--~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~t  163 (333)
                      -+|||||+|.||+..++.++..        +.+|. ++|+....  +.++++|+.  +.+++++++  +.|+|++++|..
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~   86 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGD   86 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGG
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            3899999999999888776543        23554 56876522  344566764  348999986  489999999954


Q ss_pred             h
Q psy6348         164 P  164 (333)
Q Consensus       164 ~  164 (333)
                      .
T Consensus        87 ~   87 (390)
T 4h3v_A           87 S   87 (390)
T ss_dssp             G
T ss_pred             H
Confidence            4

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.47  E-value=0.034  Score=52.17  Aligned_cols=126  Identities=21%  Similarity=0.205  Sum_probs=83.3

Q ss_pred             hHhhCCcEEEECC-CCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHH
Q psy6348          40 AATRKGVLVLNAP-GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVAL  115 (333)
Q Consensus        40 aa~~~gI~V~n~p-~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~  115 (333)
                      .|.-.+|+|.|.- |....++-  +++=++.+.++                  .| .+.|+||++||=   |++..+++.
T Consensus       113 lA~~~~vPVINag~g~~~HPtQ--~LaDl~Ti~e~------------------~g-~l~glkva~vGD~~~~rva~Sl~~  171 (306)
T 4ekn_B          113 ASEYSQVPIINAGDGSNQHPTQ--TLLDLYTIMRE------------------IG-RIDGIKIAFVGDLKYGRTVHSLVY  171 (306)
T ss_dssp             HHHHCSSCEEESCSSSSCCHHH--HHHHHHHHHHH------------------HS-CSTTCEEEEESCTTTCHHHHHHHH
T ss_pred             HHHhCCCCEEeCCCCCCcCcHH--HHHHHHHHHHH------------------hC-CcCCCEEEEEcCCCCCcHHHHHHH
Confidence            4556789999994 44555553  33333333221                  11 378999999997   589999999


Q ss_pred             HHhhC-CCEEEEEcCCC---CHH---HHHhcCccc---cChhhhccCCCEEEEecC------CchhhH-----hhccHHH
Q psy6348         116 RMQAF-GMKVIGFDPMV---SVE---DAAKLNIAS---LGLEDIWPLADYITVHTP------LIPQTK-----NLINAEV  174 (333)
Q Consensus       116 ~l~~~-G~~V~~~d~~~---~~~---~a~~~gv~~---~~l~ell~~aDvV~l~~P------~t~~t~-----~li~~~~  174 (333)
                      .+..+ |++|....|..   +.+   .+++.|..+   .+++|+++++|+|..-.-      ...+-.     -.++.+.
T Consensus       172 ~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~  251 (306)
T 4ekn_B          172 ALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREY  251 (306)
T ss_dssp             HHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCCCGGGCCSHHHHHHHHHHHCBCHHH
T ss_pred             HHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcccccCCCHHHHHHhccCcEECHHH
Confidence            99999 99999998843   222   234556543   389999999999987531      111111     2246666


Q ss_pred             HhccCCCcEEEEcc
Q psy6348         175 LKKCKKGVRVVNVA  188 (333)
Q Consensus       175 ~~~mk~gailIN~a  188 (333)
                      ++.  ++++|..|.
T Consensus       252 l~~--~~ai~mH~l  263 (306)
T 4ekn_B          252 VEG--KKFIIMHPL  263 (306)
T ss_dssp             HTT--CCCEEECCS
T ss_pred             HcC--CCCEEECCC
Confidence            665  778888773

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=96.47  E-value=0.0054  Score=55.40  Aligned_cols=93  Identities=15%  Similarity=0.073  Sum_probs=60.7

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc--Chhhh-ccCCCEEEEecCCch----hhHhh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL--GLEDI-WPLADYITVHTPLIP----QTKNL  169 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~--~l~el-l~~aDvV~l~~P~t~----~t~~l  169 (333)
                      .++|.|.|.|.||+.+++.|.+.|++|++.++.... ......+++.+  ++.++ +.++|+|+.+.....    .++.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~~~~~~~~~~l   84 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPDSGGDPVLAAL   84 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCBTTBCHHHHHH
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCccccccHHHHHH
Confidence            379999999999999999999999999999987633 23334555433  32221 788999998876442    23334


Q ss_pred             ccHHHHhcc-CCCcEEEEccCCcc
Q psy6348         170 INAEVLKKC-KKGVRVVNVARGGI  192 (333)
Q Consensus       170 i~~~~~~~m-k~gailIN~aRg~~  192 (333)
                      +..  +... ..-..+|.+|...+
T Consensus        85 ~~a--~~~~~~~~~~~v~~Ss~~v  106 (286)
T 3ius_A           85 GDQ--IAARAAQFRWVGYLSTTAV  106 (286)
T ss_dssp             HHH--HHHTGGGCSEEEEEEEGGG
T ss_pred             HHH--HHhhcCCceEEEEeeccee
Confidence            322  2222 12246777776443

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=96.47  E-value=0.0027  Score=60.70  Aligned_cols=66  Identities=20%  Similarity=0.320  Sum_probs=47.4

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHH-----Hhc-----Cccc-cChhhhccCCCEEEEecC
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDA-----AKL-----NIAS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a-----~~~-----gv~~-~~l~ell~~aDvV~l~~P  161 (333)
                      +.++||+|||. |.||+.+|..+..+|.  +|..||........     .+.     .+.. .++.+.+++||+|+++..
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            34689999998 9999999988888774  89999985422111     111     1121 256788999999999863

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=96.46  E-value=0.0036  Score=58.78  Aligned_cols=87  Identities=10%  Similarity=0.068  Sum_probs=61.4

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc--------Chhhh-ccCCCEEEEecCCchhhHh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL--------GLEDI-WPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~--------~l~el-l~~aDvV~l~~P~t~~t~~  168 (333)
                      .+++.|+|+|++|+.+++.|...|. |++.|+.+......+.++...        .++++ +++||.++++++..  ..+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d--~~n  191 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD--SET  191 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSH--HHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCcc--HHH
Confidence            5689999999999999999999999 999998764322444555432        24444 78899999999843  344


Q ss_pred             hccHHHHhccCCCcEEEEc
Q psy6348         169 LINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~  187 (333)
                      +.-....+.+.+...++--
T Consensus       192 ~~~~~~ar~~~~~~~iiar  210 (336)
T 1lnq_A          192 IHCILGIRKIDESVRIIAE  210 (336)
T ss_dssp             HHHHHHHHTTCTTSEEEEE
T ss_pred             HHHHHHHHHHCCCCeEEEE
Confidence            4445566667776555443

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=96.46  E-value=0.0047  Score=58.89  Aligned_cols=66  Identities=14%  Similarity=-0.023  Sum_probs=48.5

Q ss_pred             CCEEEEEecChHHH-HHHHHHhhCCCEEE-EEcCCCCH--HHHHhcCc-c-ccChhhhccC--CCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGR-EVALRMQAFGMKVI-GFDPMVSV--EDAAKLNI-A-SLGLEDIWPL--ADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~-~vA~~l~~~G~~V~-~~d~~~~~--~~a~~~gv-~-~~~l~ell~~--aDvV~l~~P~t  163 (333)
                      -.++||||+|.+|. .++..++.-+.++. ++|+....  +.+++.|. . +.++++++.+  .|+|++++|..
T Consensus        26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~   99 (361)
T 3u3x_A           26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSS   99 (361)
T ss_dssp             CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHH
T ss_pred             CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChH
Confidence            46899999999995 56777777889966 56876522  33455663 3 3489999975  89999999943

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.45  E-value=0.0028  Score=62.16  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=62.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE-EcCCC-------------CHHHH----HhcC-------ccccChh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-FDPMV-------------SVEDA----AKLN-------IASLGLE  147 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~-------------~~~~a----~~~g-------v~~~~l~  147 (333)
                      |.++.|+++.|.|+|++|+.+|+.|..+|.+|++ .|.+.             +.+..    .+.|       .+.++.+
T Consensus       207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~  286 (421)
T 2yfq_A          207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE  286 (421)
T ss_dssp             TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence            5578999999999999999999999999999994 45541             11211    1112       1223334


Q ss_pred             hhc-cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         148 DIW-PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       148 ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +++ .+||+++-|.+     .+.|+.+....+ ...+++-.+-+.+- .+ -.+.|++..+.
T Consensus       287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          287 EFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             chhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            444 36888888754     456777777777 34566666666653 22 33445555443

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.45  E-value=0.0041  Score=56.52  Aligned_cols=91  Identities=22%  Similarity=0.302  Sum_probs=63.2

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-------------------CHHH-H----Hhc--Ccc--c-
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-------------------SVED-A----AKL--NIA--S-  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~~~-a----~~~--gv~--~-  143 (333)
                      ..|.+++|.|||+|.+|+.+|+.|...|. ++..+|+..                   .+.. +    .+.  +++  . 
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~~  103 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTAL  103 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHHCCCCEEEEE
Confidence            45889999999999999999999999998 788887642                   1111 1    111  211  1 


Q ss_pred             ------cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         144 ------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       144 ------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                            .+++++++++|+|+.++. +.+++..+++...+.   +.-+|+.+
T Consensus       104 ~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~~p~i~~~  150 (251)
T 1zud_1          104 QQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL---NTPLITAS  150 (251)
T ss_dssp             CSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT---TCCEEEEE
T ss_pred             eccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh---CCCEEEEe
Confidence                  124567888999999987 667888887776553   34466653

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=96.45  E-value=0.0027  Score=60.44  Aligned_cols=65  Identities=31%  Similarity=0.333  Sum_probs=43.9

Q ss_pred             CEEEEEecChHHHHHHHHHhh-CCCEEEEE-cCCCCH--HHHHhc------------------Cccc-cChhhhccCCCE
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-FGMKVIGF-DPMVSV--EDAAKL------------------NIAS-LGLEDIWPLADY  155 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~--~~a~~~------------------gv~~-~~l~ell~~aDv  155 (333)
                      .+|||+|+|+||+.+++.+.. -++++.+. |+....  ..+...                  ++.. .+.++++.++|+
T Consensus         2 ikVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDv   81 (337)
T 1cf2_P            2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (337)
T ss_dssp             EEEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCE
Confidence            379999999999999998876 56787664 544321  122221                  1111 145677789999


Q ss_pred             EEEecCCc
Q psy6348         156 ITVHTPLI  163 (333)
Q Consensus       156 V~l~~P~t  163 (333)
                      |+.|+|..
T Consensus        82 V~~atp~~   89 (337)
T 1cf2_P           82 VIDCTPEG   89 (337)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCch
Confidence            99999953

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.43  E-value=0.016  Score=56.69  Aligned_cols=113  Identities=23%  Similarity=0.364  Sum_probs=74.6

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE-Ec-------CCC-CHHHHH----hcC-cc--ccChhhhc-cCCCE
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-FD-------PMV-SVEDAA----KLN-IA--SLGLEDIW-PLADY  155 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d-------~~~-~~~~a~----~~g-v~--~~~l~ell-~~aDv  155 (333)
                      |.++.|+++.|.|+|++|+.+|+.|...|.+|++ .|       |.- +.+...    +.+ +.  ..+-++++ ..||+
T Consensus       213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV  292 (419)
T 3aoe_E          213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV  292 (419)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred             CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence            4578999999999999999999999999999983 34       322 222221    222 21  12334443 47999


Q ss_pred             EEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         156 ITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       156 V~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ++-|..     .+.|+.+....++- .+++..+-+.+- .+ -.+.|++..+. ++=|.
T Consensus       293 liP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~-A~~~L~~~Gi~-~~PD~  342 (419)
T 3aoe_E          293 LVLAAR-----EGALDGDRARQVQA-QAVVEVANFGLN-PE-AEAYLLGKGAL-VVPDL  342 (419)
T ss_dssp             EEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCBC-HH-HHHHHHHHTCE-EECHH
T ss_pred             EEeccc-----ccccccchHhhCCc-eEEEECCCCcCC-HH-HHHHHHHCCCE-EECHH
Confidence            998853     56677887777753 477888877753 33 34566666664 44443

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.43  E-value=0.01  Score=58.25  Aligned_cols=113  Identities=21%  Similarity=0.187  Sum_probs=75.1

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE-EcCC-------C-CHHHHHhc----C------ccccChhhhc-cC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG-FDPM-------V-SVEDAAKL----N------IASLGLEDIW-PL  152 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~-------~-~~~~a~~~----g------v~~~~l~ell-~~  152 (333)
                      |.++.|+|+.|-|+|++|+..|+.|..+|.+|++ .|.+       - +.+...++    |      .+.++-++++ .+
T Consensus       216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~  295 (424)
T 3k92_A          216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD  295 (424)
T ss_dssp             TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred             CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence            5679999999999999999999999999999864 3433       1 23332221    2      2233445544 46


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ||+++-|..     .+.|+.+....++ -.+++-.+-+.+ . .+..+.|++..|. ++=|.
T Consensus       296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t-~eA~~iL~~rGI~-~~PD~  348 (424)
T 3k92_A          296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-T-IDATKILNERGVL-LVPDI  348 (424)
T ss_dssp             CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-C-HHHHHHHHHTTCE-EECHH
T ss_pred             ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-C-HHHHHHHHHCCCE-EECch
Confidence            999987754     5678777777773 456666666764 3 3345667666664 45444

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.42  E-value=0.011  Score=56.15  Aligned_cols=87  Identities=24%  Similarity=0.296  Sum_probs=62.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc-C-------hhhhc-----cCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL-G-------LEDIW-----PLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~-~-------l~ell-----~~aDvV~l~~P  161 (333)
                      .|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|...+ +       +.+.+     ...|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g  270 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG  270 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence            47899999999999999999999999 899999766 4466777886421 2       21212     15788888875


Q ss_pred             CchhhHhhccHHHHhccCCC-cEEEEcc
Q psy6348         162 LIPQTKNLINAEVLKKCKKG-VRVVNVA  188 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~g-ailIN~a  188 (333)
                      .. .+    -...++.++++ ..++.++
T Consensus       271 ~~-~~----~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          271 RI-ET----MMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECC
T ss_pred             CH-HH----HHHHHHHHhcCCCEEEEEc
Confidence            31 11    14556778888 7888775

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.42  E-value=0.0014  Score=58.50  Aligned_cols=63  Identities=19%  Similarity=0.202  Sum_probs=43.6

Q ss_pred             CEEEEEecChHHHHHHHH--HhhCCCEEEEE-cCCCCHHHHHhcCcc---ccChhhhcc-CCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALR--MQAFGMKVIGF-DPMVSVEDAAKLNIA---SLGLEDIWP-LADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~--l~~~G~~V~~~-d~~~~~~~a~~~gv~---~~~l~ell~-~aDvV~l~~P~  162 (333)
                      ++++|||+|.+|+.+++.  ... |+++.++ |..+........|+.   ..+++++++ +.|.|++++|.
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps  150 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR  150 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence            589999999999999985  334 8887764 655432211112332   236888886 59999999994

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.41  E-value=0.0043  Score=54.88  Aligned_cols=94  Identities=18%  Similarity=0.087  Sum_probs=59.0

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHhhCC-CEEEEEcCCCCHHH-HHhcCccc--------cChhhhccCCCEEEEecCCch
Q psy6348          96 LYGKTLAVLG-LGRIGREVALRMQAFG-MKVIGFDPMVSVED-AAKLNIAS--------LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        96 l~gktvGIIG-lG~IG~~vA~~l~~~G-~~V~~~d~~~~~~~-a~~~gv~~--------~~l~ell~~aDvV~l~~P~t~  164 (333)
                      ...|++.|.| .|.||+.+++.|...| ++|+++++...... ....++..        .+++++++.+|+|+.+.....
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~~~  100 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTGED  100 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCSTT
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCCCc
Confidence            4468999999 5999999999999999 89999998652211 11112221        145677889999988776432


Q ss_pred             hhHhhccHHHHhccCC--CcEEEEccCCc
Q psy6348         165 QTKNLINAEVLKKCKK--GVRVVNVARGG  191 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~--gailIN~aRg~  191 (333)
                      ..  ...+..+..|++  ...||+++...
T Consensus       101 ~~--~~~~~~~~~~~~~~~~~iV~iSS~~  127 (236)
T 3qvo_A          101 LD--IQANSVIAAMKACDVKRLIFVLSLG  127 (236)
T ss_dssp             HH--HHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             hh--HHHHHHHHHHHHcCCCEEEEEecce
Confidence            21  112233344432  24677776644

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.41  E-value=0.012  Score=55.50  Aligned_cols=88  Identities=18%  Similarity=0.192  Sum_probs=62.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHHhcCcccc-Ch-----hh----hc----cCCCEEEEec
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAAKLNIASL-GL-----ED----IW----PLADYITVHT  160 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~gv~~~-~l-----~e----ll----~~aDvV~l~~  160 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++... .+.++++|...+ +.     ++    +.    ...|+|+-++
T Consensus       171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~  250 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  250 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence            47899999999999999999999999 9999998653 356677776421 11     11    11    3578888887


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      .....     -...++.++++..++.++-
T Consensus       251 g~~~~-----~~~~~~~l~~~G~iv~~G~  274 (356)
T 1pl8_A          251 GAEAS-----IQAGIYATRSGGTLVLVGL  274 (356)
T ss_dssp             CCHHH-----HHHHHHHSCTTCEEEECSC
T ss_pred             CChHH-----HHHHHHHhcCCCEEEEEec
Confidence            63211     1445677888888887753

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=96.40  E-value=0.0033  Score=56.11  Aligned_cols=66  Identities=15%  Similarity=0.142  Sum_probs=45.6

Q ss_pred             CCEEEEEecChHHHHHHHH--HhhCCCEEEEE-cCCCC-HHHH-HhcCcccc---ChhhhccC--CCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALR--MQAFGMKVIGF-DPMVS-VEDA-AKLNIASL---GLEDIWPL--ADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~--l~~~G~~V~~~-d~~~~-~~~a-~~~gv~~~---~l~ell~~--aDvV~l~~P~t  163 (333)
                      .++++|+|.|++|+.+++.  ....|+++.++ |..+. ..-. .-.|+...   ++++++++  .|.+++++|..
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~  159 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST  159 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence            4689999999999999987  34578888764 66544 2111 12355433   57777764  99999999953

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.39  E-value=0.015  Score=55.17  Aligned_cols=87  Identities=24%  Similarity=0.345  Sum_probs=61.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCccc-cC-------hhhhc-----cCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIAS-LG-------LEDIW-----PLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~-~~-------l~ell-----~~aDvV~l~~P  161 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|... ++       +.+.+     ...|+|+-++.
T Consensus       191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g  270 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG  270 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence            57899999999999999999999999 899999766 446667777642 12       21212     14788888776


Q ss_pred             CchhhHhhccHHHHhccCCC-cEEEEcc
Q psy6348         162 LIPQTKNLINAEVLKKCKKG-VRVVNVA  188 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~g-ailIN~a  188 (333)
                      ..+ +    -...++.++++ ..++.++
T Consensus       271 ~~~-~----~~~~~~~l~~~~G~iv~~G  293 (374)
T 2jhf_A          271 RLD-T----MVTALSCCQEAYGVSVIVG  293 (374)
T ss_dssp             CHH-H----HHHHHHHBCTTTCEEEECS
T ss_pred             CHH-H----HHHHHHHhhcCCcEEEEec
Confidence            321 1    14456677887 7777764

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.37  E-value=0.0035  Score=58.80  Aligned_cols=87  Identities=15%  Similarity=0.149  Sum_probs=60.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhhhc----cCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLEDIW----PLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~ell----~~aDvV~l~~P~t~~  165 (333)
                      .|++|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+      ++.+.+    ...|+++.++...+.
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~  245 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKA  245 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHH
Confidence            58899999999999999999999999999999865 3456677775421      121111    256777776642211


Q ss_pred             hHhhccHHHHhccCCCcEEEEcc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~a  188 (333)
                           -...+..++++..++.++
T Consensus       246 -----~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          246 -----FSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             -----HHHHHHHEEEEEEEEECS
T ss_pred             -----HHHHHHHhccCCEEEEeC
Confidence                 134556677777777764

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.36  E-value=0.0093  Score=58.88  Aligned_cols=115  Identities=23%  Similarity=0.264  Sum_probs=68.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEE--------EcCCC--CHH---HH---Hh------------cCcccc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIG--------FDPMV--SVE---DA---AK------------LNIASL  144 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~--~~~---~a---~~------------~gv~~~  144 (333)
                      |.++.|+++.|.|+|++|+.+|+.|...|.+|++        |||.-  +.+   ..   ++            ++.+.+
T Consensus       225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~i  304 (449)
T 1bgv_A          225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  304 (449)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEEe
Confidence            5678999999999999999999999999999986        34431  111   11   11            122333


Q ss_pred             Chhhhc-cCCCEEEEecCCchhhHhhccHHHHhccC-CCcEEEEccCCcccchHhHHhhhhcC-CceEEEecc
Q psy6348         145 GLEDIW-PLADYITVHTPLIPQTKNLINAEVLKKCK-KGVRVVNVARGGIVDENALLDSLKCG-HCGGAALDV  214 (333)
Q Consensus       145 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk-~gailIN~aRg~~vd~~aL~~aL~~g-~i~gaalDV  214 (333)
                      +-++++ ..||+++-|.     +.+.|+.+....++ +|+.+|--+--.....++- +.|.+. .+. ++=|.
T Consensus       305 ~~~e~~~~~~Dil~P~A-----~~~~I~~~na~~l~a~g~kiV~EgAN~p~T~eA~-~~l~~~~Gi~-~~PD~  370 (449)
T 1bgv_A          305 PGEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTTNEAL-RFLMQQPNMV-VAPSK  370 (449)
T ss_dssp             ETCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHHHH-HHHHHCTTCE-EECHH
T ss_pred             CchhhhcCCcceeeccc-----cccccchhhHHHHHhcCCeEEEeCCCCcCCHHHH-HHHHHcCCEE-EEChH
Confidence            323333 3688777664     35667666666665 3444444433333444443 555555 554 45444

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.34  E-value=0.0061  Score=53.05  Aligned_cols=64  Identities=13%  Similarity=0.092  Sum_probs=47.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--------cChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--------LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--------~~l~ell~~aDvV~l~~P~  162 (333)
                      ++|.|.|. |.||+.+++.|...|++|++.++..+.......+++.        .+++++++++|+|+.+...
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~   77 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP   77 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence            68999995 9999999999999999999999865321111122221        1356788899999988754

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=96.33  E-value=0.0036  Score=58.37  Aligned_cols=87  Identities=15%  Similarity=0.048  Sum_probs=66.7

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc------C-hhhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL------G-LEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~------~-l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .|++|.|+| .|.+|...++.++.+|.+|++.++....+.++++|...+      + +.+.+...|+++-++.. +    
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~-~----  226 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGG-D----  226 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCH-H----
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCc-H----
Confidence            578999997 999999999999999999998875434556677786532      2 55566789999988762 1    


Q ss_pred             hccHHHHhccCCCcEEEEccC
Q psy6348         169 LINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aR  189 (333)
                      .. ...++.++++..++.++.
T Consensus       227 ~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          227 VG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             HH-HHHGGGEEEEEEEEECCS
T ss_pred             HH-HHHHHhccCCCEEEEeCC
Confidence            12 567788999999998853

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.32  E-value=0.0089  Score=59.60  Aligned_cols=113  Identities=12%  Similarity=0.107  Sum_probs=70.2

Q ss_pred             CCEEEEEecChH--HHHHHHHHh---hC-CCEEEEEcCCCCH-HH----HH----hcC----ccc-cChhhhccCCCEEE
Q psy6348          98 GKTLAVLGLGRI--GREVALRMQ---AF-GMKVIGFDPMVSV-ED----AA----KLN----IAS-LGLEDIWPLADYIT  157 (333)
Q Consensus        98 gktvGIIGlG~I--G~~vA~~l~---~~-G~~V~~~d~~~~~-~~----a~----~~g----v~~-~~l~ell~~aDvV~  157 (333)
                      .++|+|||.|.|  |.++|..+.   ++ |.+|..||..... +.    ..    ..+    +.. .++++.+++||+|+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI   82 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   82 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence            469999999997  566666664   33 8899999986522 11    11    111    111 26778899999999


Q ss_pred             EecCCc---------------------hhh----------------Hhhcc--HHHHhccCCCcEEEEccCCcccchHhH
Q psy6348         158 VHTPLI---------------------PQT----------------KNLIN--AEVLKKCKKGVRVVNVARGGIVDENAL  198 (333)
Q Consensus       158 l~~P~t---------------------~~t----------------~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL  198 (333)
                      +++|..                     .+|                ..++.  .+.+....|++++||++-.--+-..++
T Consensus        83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~  162 (480)
T 1obb_A           83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV  162 (480)
T ss_dssp             ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred             ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence            999741                     011                01110  123444568999999987665555666


Q ss_pred             HhhhhcCCceEEE
Q psy6348         199 LDSLKCGHCGGAA  211 (333)
Q Consensus       199 ~~aL~~g~i~gaa  211 (333)
                      .+ +...++.|.+
T Consensus       163 ~k-~p~~rviG~c  174 (480)
T 1obb_A          163 TR-TVPIKAVGFC  174 (480)
T ss_dssp             HH-HSCSEEEEEC
T ss_pred             HH-CCCCcEEecC
Confidence            55 5555666653

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=96.30  E-value=0.039  Score=52.82  Aligned_cols=139  Identities=17%  Similarity=0.119  Sum_probs=86.5

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCccc---ccCCCccccCCCEEEEEecC-hHHHHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWD---RKLYTGTELYGKTLAVLGLG-RIGREVA  114 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~---~~~~~g~~l~gktvGIIGlG-~IG~~vA  114 (333)
                      +.|...+|+|+|.-+....++-  +++=++.+.+++.         .+.   ........+.|+||++||=+ ++..+++
T Consensus       137 ~lA~~s~vPVINag~d~~HPtQ--aLaDl~TI~E~~G---------~~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~  205 (353)
T 3sds_A          137 NLAKHSSVPVINALCDTFHPLQ--AIADFLTIHESFA---------SQSATHGTHPSSLGLEGLKIAWVGDANNVLFDLA  205 (353)
T ss_dssp             HHHHHCSSCEEEEECSSCCHHH--HHHHHHHHHHHTC-----------------CTTCCSCTTCEEEEESCCCHHHHHHH
T ss_pred             HHHhhCCCCEEECCCCCCCcHH--HHHHHHHHHHHhC---------CCcccccccccccccCCCEEEEECCCchHHHHHH
Confidence            3456689999999654445543  3333444443321         110   00112345899999999975 5778888


Q ss_pred             HHHhhCCCEEEEEcCCC---CHHH---HHh------cC--ccc-cChhhhccCCCEEEEec--CCchh--h--------H
Q psy6348         115 LRMQAFGMKVIGFDPMV---SVED---AAK------LN--IAS-LGLEDIWPLADYITVHT--PLIPQ--T--------K  167 (333)
Q Consensus       115 ~~l~~~G~~V~~~d~~~---~~~~---a~~------~g--v~~-~~l~ell~~aDvV~l~~--P~t~~--t--------~  167 (333)
                      ..+..+|++|....|..   ..+.   +++      .|  ++. .+++|+++++|+|..-+  +...+  .        .
T Consensus       206 ~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~  285 (353)
T 3sds_A          206 IAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKD  285 (353)
T ss_dssp             HHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEEEECCC--------CHHHHHHTTT
T ss_pred             HHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhC
Confidence            88899999999998753   2221   222      12  333 38999999999998643  21111  0        1


Q ss_pred             hhccHHHHhc--cCCCcEEEEcc
Q psy6348         168 NLINAEVLKK--CKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~--mk~gailIN~a  188 (333)
                      -.++.+.++.  +|++++|..|.
T Consensus       286 y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          286 FKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             CCBCHHHHHHHTCCTTCEEEECS
T ss_pred             ceecHHHHhhcccCCCcEEECCC
Confidence            2467888888  89999999884

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.30  E-value=0.014  Score=55.40  Aligned_cols=87  Identities=24%  Similarity=0.361  Sum_probs=62.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCccc-cC-------hhhhcc-----CCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIAS-LG-------LEDIWP-----LADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~-~~-------l~ell~-----~aDvV~l~~P  161 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|... ++       +.+.+.     ..|+|+-++.
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g  269 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG  269 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence            57899999999999999999999999 899999766 446667777642 12       212221     4788888876


Q ss_pred             CchhhHhhccHHHHhccCCC-cEEEEcc
Q psy6348         162 LIPQTKNLINAEVLKKCKKG-VRVVNVA  188 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~g-ailIN~a  188 (333)
                      ..+ +    -...++.++++ ..++.++
T Consensus       270 ~~~-~----~~~~~~~l~~~~G~iv~~G  292 (373)
T 2fzw_A          270 NVK-V----MRAALEACHKGWGVSVVVG  292 (373)
T ss_dssp             CHH-H----HHHHHHTBCTTTCEEEECS
T ss_pred             cHH-H----HHHHHHhhccCCcEEEEEe
Confidence            321 1    14556778888 7888775

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=96.30  E-value=0.011  Score=56.19  Aligned_cols=95  Identities=11%  Similarity=0.179  Sum_probs=60.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHH--Hhc--Cc------cc--c-ChhhhccCCCEEEEe
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDA--AKL--NI------AS--L-GLEDIWPLADYITVH  159 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a--~~~--gv------~~--~-~l~ell~~aDvV~l~  159 (333)
                      ....++|+|||.|.||..+|..+...|.  ++..||........  .++  ..      ..  . +.+ .+++||+|+++
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~   94 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT   94 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence            3567899999999999999998887777  89999985422111  111  10      11  1 344 58999999998


Q ss_pred             cCCc--h-hhH--------hhcc--HHHHhccCCCcEEEEccCC
Q psy6348         160 TPLI--P-QTK--------NLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       160 ~P~t--~-~t~--------~li~--~~~~~~mk~gailIN~aRg  190 (333)
                      ....  + .++        .++.  .+.+....|++++++++-.
T Consensus        95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtNP  138 (331)
T 4aj2_A           95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSNP  138 (331)
T ss_dssp             CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCh
Confidence            6421  1 112        1111  1233445789999999854

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.29  E-value=0.018  Score=54.24  Aligned_cols=88  Identities=19%  Similarity=0.138  Sum_probs=61.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-C-------hhhh---c-----cCCCEEEEe
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-G-------LEDI---W-----PLADYITVH  159 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~-------l~el---l-----~~aDvV~l~  159 (333)
                      .|++|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|...+ +       .+++   .     ...|+|+-+
T Consensus       168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~  247 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  247 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence            47899999999999999999999999999998765 3355667775321 1       1111   1     257888887


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      +.... +    -...+..++++..++.++.
T Consensus       248 ~g~~~-~----~~~~~~~l~~~G~iv~~G~  272 (352)
T 1e3j_A          248 SGNEK-C----ITIGINITRTGGTLMLVGM  272 (352)
T ss_dssp             SCCHH-H----HHHHHHHSCTTCEEEECSC
T ss_pred             CCCHH-H----HHHHHHHHhcCCEEEEEec
Confidence            76321 1    1445667788888887753

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.29  E-value=0.017  Score=54.97  Aligned_cols=87  Identities=23%  Similarity=0.218  Sum_probs=61.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc-Ch-------hhhc-----cCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL-GL-------EDIW-----PLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~-~l-------~ell-----~~aDvV~l~~P  161 (333)
                      .|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|...+ +.       .+.+     ...|+|+-++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G  274 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  274 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence            57899999999999999999999999 899999866 4466677776421 21       1111     14788887775


Q ss_pred             CchhhHhhccHHHHhccCCC-cEEEEcc
Q psy6348         162 LIPQTKNLINAEVLKKCKKG-VRVVNVA  188 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~g-ailIN~a  188 (333)
                      .. .+    -...++.++++ ..++.++
T Consensus       275 ~~-~~----~~~~~~~l~~~~G~iv~~G  297 (376)
T 1e3i_A          275 TA-QT----LKAAVDCTVLGWGSCTVVG  297 (376)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECC
T ss_pred             CH-HH----HHHHHHHhhcCCCEEEEEC
Confidence            31 11    14556777877 7777764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=96.29  E-value=0.0066  Score=52.86  Aligned_cols=64  Identities=14%  Similarity=0.150  Sum_probs=45.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHh-hCCCEEEEEcCCCC-HHH-H--HhcCccc--------cChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLG-LGRIGREVALRMQ-AFGMKVIGFDPMVS-VED-A--AKLNIAS--------LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~-~~G~~V~~~d~~~~-~~~-a--~~~gv~~--------~~l~ell~~aDvV~l~~P~  162 (333)
                      |++.|.| .|.||+.+++.|. ..|++|++.++... ... .  ...++..        .+++++++++|+|+.+...
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~   83 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAME   83 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCC
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCC
Confidence            6799999 4999999999999 89999999998643 211 1  1112221        1345677888888887763

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.28  E-value=0.016  Score=54.91  Aligned_cols=109  Identities=17%  Similarity=0.138  Sum_probs=68.7

Q ss_pred             CEEEEEecChHHHHHHHHHhh---------CCCEEEE-EcCCCC------HH--HHHh--cCcccc--Chhhhcc--CCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQA---------FGMKVIG-FDPMVS------VE--DAAK--LNIASL--GLEDIWP--LAD  154 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~---------~G~~V~~-~d~~~~------~~--~a~~--~gv~~~--~l~ell~--~aD  154 (333)
                      .++||||+|.||+.+++.+..         .+.+|.+ +|+...      ..  ....  .+..+.  ++++++.  +.|
T Consensus         3 irvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iD   82 (327)
T 3do5_A            3 IKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYD   82 (327)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCS
T ss_pred             EEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCC
Confidence            379999999999999998875         4677766 465531      11  1111  121122  7888885  599


Q ss_pred             EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCce
Q psy6348         155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHCG  208 (333)
Q Consensus       155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i~  208 (333)
                      +|+.++|....... .-......|+.|.-+|...-+.+. .-+.|.++.++....
T Consensus        83 vVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~~  136 (327)
T 3do5_A           83 VLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGVR  136 (327)
T ss_dssp             EEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTCC
T ss_pred             EEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCCc
Confidence            99999996543222 223345668888888877554443 456777777666553

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.27  E-value=0.0049  Score=58.82  Aligned_cols=87  Identities=21%  Similarity=0.163  Sum_probs=61.4

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Chhhhcc--------CCCEEEEec
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GLEDIWP--------LADYITVHT  160 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l~ell~--------~aDvV~l~~  160 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+..+      ++.+.+.        ..|+|+-++
T Consensus       182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~  261 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA  261 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence            48899999999999999999999999 899998865 3455677776422      2222222        478888776


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      ... .+    -...+..++++..++.++
T Consensus       262 G~~-~~----~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          262 GVA-ET----VKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             CCH-HH----HHHHHHHEEEEEEEEECS
T ss_pred             CCH-HH----HHHHHHHhccCCEEEEEe
Confidence            521 11    144566778888887775

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=96.26  E-value=0.01  Score=59.03  Aligned_cols=113  Identities=12%  Similarity=0.087  Sum_probs=70.0

Q ss_pred             CCEEEEEecChH-HHHHHHHHhhC-----CCEEEEEcCCCCHHHH-----H----hcC----ccc-cChhhhccCCCEEE
Q psy6348          98 GKTLAVLGLGRI-GREVALRMQAF-----GMKVIGFDPMVSVEDA-----A----KLN----IAS-LGLEDIWPLADYIT  157 (333)
Q Consensus        98 gktvGIIGlG~I-G~~vA~~l~~~-----G~~V~~~d~~~~~~~a-----~----~~g----v~~-~~l~ell~~aDvV~  157 (333)
                      .+||+|||.|.+ |.++|..|...     +.+|..||+.......     .    ..+    +.. .++++.+++||+|+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV  107 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM  107 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence            459999999998 66677555444     6689999986522110     1    111    111 26778899999999


Q ss_pred             EecCCch---hhH----------------------------hhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         158 VHTPLIP---QTK----------------------------NLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       158 l~~P~t~---~t~----------------------------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      +++|...   .++                            .++.  .+.+....|++++||++-.--+-..++.+....
T Consensus       108 iaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~p~  187 (472)
T 1u8x_X          108 AHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLRPN  187 (472)
T ss_dssp             ECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHSTT
T ss_pred             EcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCCC
Confidence            9998521   011                            1110  123344568999999987665555555555444


Q ss_pred             CCceEE
Q psy6348         205 GHCGGA  210 (333)
Q Consensus       205 g~i~ga  210 (333)
                      .++.|.
T Consensus       188 ~rViG~  193 (472)
T 1u8x_X          188 SKILNI  193 (472)
T ss_dssp             CCEEEC
T ss_pred             CCEEEe
Confidence            466665

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=96.26  E-value=0.0055  Score=59.75  Aligned_cols=64  Identities=25%  Similarity=0.344  Sum_probs=45.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc----ccc---ChhhhccCCCEEEE
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI----ASL---GLEDIWPLADYITV  158 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv----~~~---~l~ell~~aDvV~l  158 (333)
                      -+.|+||+|+|-|.+|+.+++.++.+|++|+++|++.......-...    .+.   .+.++++++|+|+.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~  102 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVST  102 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEE
Confidence            46799999999999999999999999999999998763221111111    111   24455667888875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.23  E-value=0.0051  Score=58.32  Aligned_cols=87  Identities=20%  Similarity=0.228  Sum_probs=58.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-hcCcccc----C---hhhhccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-KLNIASL----G---LEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-~~gv~~~----~---l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.++.... +.++ ++|...+    +   +.++....|+|+-++.....  
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~--  257 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA--  257 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence            6889999999999999999999999999999987643 4445 6675321    1   12223356777766652211  


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                         -...++.++++..++.++
T Consensus       258 ---~~~~~~~l~~~G~iv~~G  275 (357)
T 2cf5_A          258 ---LEPYLSLLKLDGKLILMG  275 (357)
T ss_dssp             ---SHHHHTTEEEEEEEEECS
T ss_pred             ---HHHHHHHhccCCEEEEeC
Confidence               133455666766666664

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.23  E-value=0.0029  Score=54.43  Aligned_cols=35  Identities=11%  Similarity=0.167  Sum_probs=31.8

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+++.|+| .|.||+.+++.++..|.+|++.++..
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~   73 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD   73 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred             CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence            578999999 69999999999999999999999854

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=96.22  E-value=0.0068  Score=57.01  Aligned_cols=85  Identities=16%  Similarity=0.301  Sum_probs=54.8

Q ss_pred             CEEEEEecChHHHHHHHHHhh--CCCEEE-EEcCCCC---HHHHHhcCccc--cChhhhcc-----CCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQA--FGMKVI-GFDPMVS---VEDAAKLNIAS--LGLEDIWP-----LADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~--~G~~V~-~~d~~~~---~~~a~~~gv~~--~~l~ell~-----~aDvV~l~~P~t~~  165 (333)
                      .++||||+|.||+.+++.+..  -++++. ++|+...   .+.+++.|+..  .+.+++++     +.|+|++++| +. 
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp-~~-   82 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS-AS-   82 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC-HH-
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC-hH-
Confidence            489999999999999998843  466654 4677653   24455677652  35677754     5899999999 22 


Q ss_pred             hHhhccHHHHhccCCCcEEEE
Q psy6348         166 TKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN  186 (333)
                      ...-+....++ -++|..+++
T Consensus        83 ~h~~~a~~al~-a~~Gk~Vi~  102 (312)
T 1nvm_B           83 AHVQNEALLRQ-AKPGIRLID  102 (312)
T ss_dssp             HHHHHHHHHHH-HCTTCEEEE
T ss_pred             HHHHHHHHHHH-hCCCCEEEE
Confidence            22222222222 233777777

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.21  E-value=0.0055  Score=56.50  Aligned_cols=85  Identities=18%  Similarity=0.207  Sum_probs=57.8

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Ch------hhhccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GL------EDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l------~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .|+++.|+|. |.+|...++.++.+|++|++.++.. ..+.++++|...+ +.      .+.+...|+++- +.. +   
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~---  199 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K---  199 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence            4789999998 9999999999999999999999865 3355566665321 21      122245777776 653 1   


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                        .-...++.|+++..++.++
T Consensus       200 --~~~~~~~~l~~~G~~v~~g  218 (302)
T 1iz0_A          200 --EVEESLGLLAHGGRLVYIG  218 (302)
T ss_dssp             --THHHHHTTEEEEEEEEEC-
T ss_pred             --HHHHHHHhhccCCEEEEEe
Confidence              1144556667776666663

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=96.21  E-value=0.0088  Score=57.25  Aligned_cols=93  Identities=12%  Similarity=0.102  Sum_probs=57.4

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCC------CEEEEEcCCCCH-HHHHh--------cCccccCh-hhhccCCCEEEEecC
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFG------MKVIGFDPMVSV-EDAAK--------LNIASLGL-EDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G------~~V~~~d~~~~~-~~a~~--------~gv~~~~l-~ell~~aDvV~l~~P  161 (333)
                      .+|+|+| .|.+|+.+.+.|...+      .++..+.+..+. .....        ..+...++ .+.+.++|+|++|+|
T Consensus        10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~alg   89 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAVLGGHDAVFLALP   89 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHHHTTCSEEEECCT
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHHhcCCCEEEECCC
Confidence            5899999 8999999999998776      477666422211 11110        11111122 233568999999998


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCcccchHh
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENA  197 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~a  197 (333)
                      ...      ..+..+.++.|+.+|+.+.---.+..+
T Consensus        90 ~~~------s~~~~~~~~~G~~vIDlSa~~R~~~~~  119 (352)
T 2nqt_A           90 HGH------SAVLAQQLSPETLIIDCGADFRLTDAA  119 (352)
T ss_dssp             TSC------CHHHHHHSCTTSEEEECSSTTTCSCHH
T ss_pred             Ccc------hHHHHHHHhCCCEEEEECCCccCCcch
Confidence            542      344444446789999997654443333

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.20  E-value=0.009  Score=59.53  Aligned_cols=109  Identities=16%  Similarity=0.134  Sum_probs=71.9

Q ss_pred             CCEEEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEe--cCC-chhhHh-
Q psy6348          98 GKTLAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVH--TPL-IPQTKN-  168 (333)
Q Consensus        98 gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~--~P~-t~~t~~-  168 (333)
                      .|++-|||+|..|.+ +|+.|+..|++|.++|...+.  +..++.|++..  .-.+.+.++|+|++.  +|. +|.... 
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a  101 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAA  101 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHH
Confidence            579999999999996 899999999999999986543  34556787653  223456789999986  442 222211 


Q ss_pred             ------hccH-HHHhc-cCCC-cEEEEccCCcccchHhHHhhhhcCC
Q psy6348         169 ------LINA-EVLKK-CKKG-VRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       169 ------li~~-~~~~~-mk~g-ailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                            ++++ +.+.. ++.. .+-|--+.|+--...-+...|+...
T Consensus       102 ~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  148 (494)
T 4hv4_A          102 REARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG  148 (494)
T ss_dssp             HHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             HHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence                  2333 23333 4432 3445556787777777777776543

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=96.20  E-value=0.0091  Score=56.34  Aligned_cols=64  Identities=22%  Similarity=0.246  Sum_probs=46.7

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCC--CEEEEEcCCCCHHHH---HhcCc----cc----cChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFG--MKVIGFDPMVSVEDA---AKLNI----AS----LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a---~~~gv----~~----~~l~ell~~aDvV~l~~P~  162 (333)
                      +||+|+| .|.+|..++..|...|  .+|..+|.......+   .+...    ..    .++.+.+++||+|+++.+.
T Consensus         9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~   86 (326)
T 1smk_A            9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV   86 (326)
T ss_dssp             EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence            5899999 8999999999998878  789999975432222   11111    11    1456789999999999863

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.18  E-value=0.013  Score=56.14  Aligned_cols=86  Identities=22%  Similarity=0.307  Sum_probs=54.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEEEEc-CCCCHHHH-H--hc----C-------------------cccc---Chh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVIGFD-PMVSVEDA-A--KL----N-------------------IASL---GLE  147 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d-~~~~~~~a-~--~~----g-------------------v~~~---~l~  147 (333)
                      .+|||+|+|+||+.+.+.|... .++|.+.. |....+.. .  +.    |                   +...   +.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~   97 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPA   97 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGG
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChH
Confidence            4899999999999999998765 68887765 45444311 1  11    0                   0111   334


Q ss_pred             hhc---cCCCEEEEecCCchhhHhhccHHHHhccCCCc--EEEEccC
Q psy6348         148 DIW---PLADYITVHTPLIPQTKNLINAEVLKKCKKGV--RVVNVAR  189 (333)
Q Consensus       148 ell---~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ga--ilIN~aR  189 (333)
                      ++-   .++|+|+.|+|.-.. +    +..-+.++.|+  ++|+.+.
T Consensus        98 ~i~w~~~~vDvV~eatg~~~s-~----e~a~~~l~~GakkvVId~pa  139 (354)
T 3cps_A           98 EIPWGASGAQIVCESTGVFTT-E----EKASLHLKGGAKKVIISAPP  139 (354)
T ss_dssp             GCCHHHHTCCEEEECSSSCCS-H----HHHGGGGTTTCSEEEESSCC
T ss_pred             HCCcccCCCCEEEECCCchhh-H----HHHHHHHHcCCcEEEEeCCC
Confidence            432   579999999984322 1    22234567788  8888754

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=96.18  E-value=0.016  Score=56.66  Aligned_cols=98  Identities=18%  Similarity=0.142  Sum_probs=66.5

Q ss_pred             CcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEe-----cCh---HHHHHHHH
Q psy6348          45 GVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLG-----LGR---IGREVALR  116 (333)
Q Consensus        45 gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIG-----lG~---IG~~vA~~  116 (333)
                      .++|+|.-+....++-  +++=++.+.+++         |.+       ..+.|+||++||     +|.   +..+++..
T Consensus       153 ~~PVINa~~~~~HPtQ--aLaDl~TI~E~~---------G~l-------~~l~Glkva~vgd~~~s~Gd~nnVa~Sli~~  214 (418)
T 2yfk_A          153 RPTLVNLQCDIDHPTQ--AMADALHLIHEF---------GGI-------ENLKGKKVAMTWAYSPSYGKPLSVPQGIVGL  214 (418)
T ss_dssp             CCEEEEEEESSCCHHH--HHHHHHHHHHHT---------TSS-------GGGTTCEEEEECCCCSSSCCCSHHHHHHHHH
T ss_pred             CCeEEeCCCCccChHH--HHHHHHHHHHHh---------CCc-------cccCCCEEEEEeccccccCccchHHHHHHHH
Confidence            5679998665555654  444444443321         111       138899999998     454   99999999


Q ss_pred             HhhCCCEEEEEcCCC---CHHH-------HHhcCc--cc-cChhhhccCCCEEEEec
Q psy6348         117 MQAFGMKVIGFDPMV---SVED-------AAKLNI--AS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus       117 l~~~G~~V~~~d~~~---~~~~-------a~~~gv--~~-~~l~ell~~aDvV~l~~  160 (333)
                      +..+|++|....|..   .++.       +++.|.  .. .+++|+++++|+|..-+
T Consensus       215 l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~ADVVytd~  271 (418)
T 2yfk_A          215 MTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDADVVYPKS  271 (418)
T ss_dssp             HGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEEcc
Confidence            999999999998853   2221       223564  32 37999999999999853

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.15  E-value=0.004  Score=58.14  Aligned_cols=103  Identities=18%  Similarity=0.252  Sum_probs=67.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCE-EEEEcCCCCHHHHHhcCcccc-Chhhhcc--CCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMK-VIGFDPMVSVEDAAKLNIASL-GLEDIWP--LADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~a~~~gv~~~-~l~ell~--~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      .++.|+|. |++|+.+++.+...|++ |...+|....+  +-.|+... +++++..  ..|++++++|. +.+...+ ++
T Consensus        14 ~~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v-~e   89 (294)
T 2yv1_A           14 TKAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQ--NVHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAV-FE   89 (294)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH-HH
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCc--eECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHH-HH
Confidence            35788899 99999999999988997 34567653211  12466544 7999988  89999999993 3333333 23


Q ss_pred             HHhccCCCcE-EEEccCC-cccchHhHHhhhhcCCce
Q psy6348         174 VLKKCKKGVR-VVNVARG-GIVDENALLDSLKCGHCG  208 (333)
Q Consensus       174 ~~~~mk~gai-lIN~aRg-~~vd~~aL~~aL~~g~i~  208 (333)
                      ..+   .|.- +|..+.| ..-+++.|.++.++..+.
T Consensus        90 a~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           90 AID---AGIELIVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             HHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            332   3333 4545444 223456888888776554

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.11  E-value=0.0063  Score=57.29  Aligned_cols=86  Identities=21%  Similarity=0.237  Sum_probs=57.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-----Chh----hhc--cCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-----GLE----DIW--PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-----~l~----ell--~~aDvV~l~~P~t  163 (333)
                      .|++|.|+|. |.||...++.++.+|.+|++.++.. ..+.++++|...+     ++.    ++.  ...|+++-++.. 
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~-  237 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG-  237 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch-
Confidence            5889999998 9999999999999999999999865 4455666665321     111    111  146777766652 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +     .-...+..++++..++.++
T Consensus       238 ~-----~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          238 P-----AFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             ------CHHHHHHTEEEEEEEEEC-
T ss_pred             h-----HHHHHHHhhcCCCEEEEEE
Confidence            1     1244556667776666664

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=96.10  E-value=0.037  Score=54.65  Aligned_cols=181  Identities=15%  Similarity=0.084  Sum_probs=119.3

Q ss_pred             CCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-
Q psy6348          44 KGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM-  122 (333)
Q Consensus        44 ~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-  122 (333)
                      ..|+|+|+.   -..+|=-+++-+++.+|-                  .|..|...++.|.|.|..|..+|+.+...|. 
T Consensus       186 ~~ipvFnDD---~qGTA~V~lAgllnAlki------------------~gk~l~d~riV~~GAGaAGigia~ll~~~G~~  244 (487)
T 3nv9_A          186 CDIPVWHDD---QQGTASVTLAGLLNALKL------------------VKKDIHECRMVFIGAGSSNTTCLRLIVTAGAD  244 (487)
T ss_dssp             CSSCEEETT---THHHHHHHHHHHHHHHHH------------------HTCCGGGCCEEEECCSHHHHHHHHHHHHTTCC
T ss_pred             ccCCccccc---cchHHHHHHHHHHHHHHH------------------hCCChhhcEEEEECCCHHHHHHHHHHHHcCCC
Confidence            489999996   356777788889988772                  3567888899999999999999999999999 


Q ss_pred             --EEEEEcCCC----CHHHH-------------HhcCc-cccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCc
Q psy6348         123 --KVIGFDPMV----SVEDA-------------AKLNI-ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGV  182 (333)
Q Consensus       123 --~V~~~d~~~----~~~~a-------------~~~gv-~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~ga  182 (333)
                        +++.+|+.-    .....             +...- ...+|.|+++.+|+++=.- . . ..+.+.++.++.|.+..
T Consensus       245 ~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S-~-~-~pg~ft~e~V~~Ma~~P  321 (487)
T 3nv9_A          245 PKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLS-T-P-GPGVVKAEWIKSMGEKP  321 (487)
T ss_dssp             GGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC-C-S-SCCCCCHHHHHTSCSSC
T ss_pred             cccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec-c-c-CCCCCCHHHHHhhcCCC
Confidence              799998751    11111             11111 2247999999999766442 1 0 14789999999999999


Q ss_pred             EEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCC---------CCcHHHHHHHHH
Q psy6348         183 RVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLG---------ASTKEAQIRVAV  253 (333)
Q Consensus       183 ilIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~---------~~t~ea~~~~~~  253 (333)
                      ++.-.|....  |-.=.+|.+.|+.. .+.- -...|  .       +.-|+++-|-++         --|.+-....++
T Consensus       322 IIFaLSNPtp--Ei~pe~A~~~G~aI-vATG-rsd~P--n-------Q~NN~liFPGI~~Gal~~~A~~Itd~M~~AAA~  388 (487)
T 3nv9_A          322 IVFCCANPVP--EIYPYEAKEAGAYI-VATG-RGDFP--N-------QVNNSVGFPGILKGALIVRARKITDNMAIAASR  388 (487)
T ss_dssp             EEEECCSSSC--SSCHHHHHHTTCSE-EEES-CTTSS--S-------BCCGGGTHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             EEEECCCCCc--cCCHHHHHHhCCEE-EEEC-CCCCc--c-------cCcceeEcchhhHHHHHcCCcccCHHHHHHHHH
Confidence            9999987654  22222333356532 2211 01112  1       456788888664         245555555555


Q ss_pred             HHHHHHHH
Q psy6348         254 EIAEQFIA  261 (333)
Q Consensus       254 ~~~~~i~~  261 (333)
                      .+++.+..
T Consensus       389 ALA~~v~~  396 (487)
T 3nv9_A          389 ALAEFAEK  396 (487)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhhCCc
Confidence            55554443

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.10  E-value=0.013  Score=55.78  Aligned_cols=87  Identities=21%  Similarity=0.345  Sum_probs=53.1

Q ss_pred             CEEEEEecChHHHHHHHHHhh-CCCEEEEE-cCCCCHHHHH---hc----C-------------------ccc---cChh
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-FGMKVIGF-DPMVSVEDAA---KL----N-------------------IAS---LGLE  147 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~~a~---~~----g-------------------v~~---~~l~  147 (333)
                      .+|||+|+|+||+.+++.+.. -+++|.+. |+....+...   ++    |                   +..   .+++
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~   83 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence            489999999999999998764 56888766 4323333211   10    0                   000   1455


Q ss_pred             hh-c--cCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         148 DI-W--PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       148 el-l--~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      ++ +  .++|+|+.|+|.....     +..-+.++.|+..|.++-.
T Consensus        84 ~l~~~~~~vDvV~eatg~~~~~-----e~a~~~l~aGak~V~iSap  124 (335)
T 1u8f_O           84 KIKWGDAGAEYVVESTGVFTTM-----EKAGAHLQGGAKRVIISAP  124 (335)
T ss_dssp             GCCTTTTTCCEEEECSSSCCSH-----HHHGGGGGGTCSEEEESSC
T ss_pred             HCccccCCCCEEEECCCchhhH-----HHHHHHHhCCCeEEEeccC
Confidence            55 2  5799999999843221     2223446778666666544

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.06  E-value=0.0063  Score=57.81  Aligned_cols=86  Identities=19%  Similarity=0.064  Sum_probs=56.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-C-----hhh----hc--cCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-G-----LED----IW--PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~-----l~e----ll--~~aDvV~l~~P~t  163 (333)
                      .|++|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|...+ +     +.+    +.  ...|+|+-++. .
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g-~  267 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAG-G  267 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETT-S
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCC-h
Confidence            58899999999999999999999999999999865 3355666665321 1     111    11  14666666654 1


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +     .-...++.++++..++.++
T Consensus       268 ~-----~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          268 A-----GLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             S-----CHHHHHHHEEEEEEEEEEC
T ss_pred             H-----HHHHHHHHhhcCCEEEEEe
Confidence            1     1133445566666666553

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.06  E-value=0.011  Score=56.35  Aligned_cols=29  Identities=28%  Similarity=0.493  Sum_probs=24.8

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEEEc
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIGFD  128 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d  128 (333)
                      +|||+|+|+||+.+++.+... +++|.+..
T Consensus         5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            899999999999999998765 67877654

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.012  Score=55.44  Aligned_cols=88  Identities=16%  Similarity=0.083  Sum_probs=57.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-------Chhhhcc-----CCCEEEEecCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-------GLEDIWP-----LADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-------~l~ell~-----~aDvV~l~~P~  162 (333)
                      .|+++.|+|. |.||..+++.++..|.+|++.++.... +.++++|....       ++.+.+.     ..|+|+.++..
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            4789999999 899999999999999999999986533 44555564311       1222221     46777766542


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      .+     .-...+..|+++..+|+++.
T Consensus       249 ~~-----~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          249 EA-----AIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             HH-----HHHHHTTSEEEEEEEEECCC
T ss_pred             HH-----HHHHHHHHHhcCCEEEEEeC
Confidence            11     11344566666667776643

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.03  E-value=0.0059  Score=57.51  Aligned_cols=60  Identities=18%  Similarity=0.262  Sum_probs=46.0

Q ss_pred             CCEEEEEecChHHH-HHHHHHhhC-CCEEEE-EcCCCCHHHHHhcCccc-cChhhhccC---CCEEEEecCC
Q psy6348          98 GKTLAVLGLGRIGR-EVALRMQAF-GMKVIG-FDPMVSVEDAAKLNIAS-LGLEDIWPL---ADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGlG~IG~-~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~gv~~-~~l~ell~~---aDvV~l~~P~  162 (333)
                      -.++||||+|.||+ ..++.++.. +.+|.+ +|+...     ..|+.. .+++++++.   .|+|++++|.
T Consensus        25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~-----~~g~~~~~~~~~ll~~~~~vD~V~i~tp~   91 (330)
T 4ew6_A           25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT-----VEGVNSYTTIEAMLDAEPSIDAVSLCMPP   91 (330)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC-----CTTSEEESSHHHHHHHCTTCCEEEECSCH
T ss_pred             CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh-----hcCCCccCCHHHHHhCCCCCCEEEEeCCc
Confidence            35899999999998 688888775 678664 677643     246654 489999864   9999999993

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.02  E-value=0.022  Score=54.21  Aligned_cols=91  Identities=20%  Similarity=0.207  Sum_probs=63.4

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-------------------CH-HHH----Hhc--Cccc--c
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-------------------SV-EDA----AKL--NIAS--L  144 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~-~~a----~~~--gv~~--~  144 (333)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..                   .+ +.+    .+.  +++.  .
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~inP~v~v~~~  109 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  109 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhCCCCEEEEE
Confidence            46899999999999999999999999997 677887632                   11 111    111  1211  1


Q ss_pred             ----------------------ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         145 ----------------------GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       145 ----------------------~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                                            .++++++++|+|+.++- +.+++.++++....   .+..+|+.+
T Consensus       110 ~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~---~~~plI~aa  171 (340)
T 3rui_A          110 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA  171 (340)
T ss_dssp             CCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHH---TTCEEEEEE
T ss_pred             eccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHH---cCCcEEEee
Confidence                                  13567889999998874 66788888776654   345677764

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.01  E-value=0.0087  Score=55.46  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=58.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc--ChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~--~l~ell~~aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      .|++|.|+|.|.+|...++.++.+|.+|++.+.....+.++++|...+  +.+++-...|+++-++.. +.+     ...
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~-~~~-----~~~  215 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNS-QNA-----AAL  215 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------TT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCc-hhH-----HHH
Confidence            588999999999999999999999999999993336677788886432  222333457777776652 111     334


Q ss_pred             HhccCCCcEEEEc
Q psy6348         175 LKKCKKGVRVVNV  187 (333)
Q Consensus       175 ~~~mk~gailIN~  187 (333)
                      ++.++++..++.+
T Consensus       216 ~~~l~~~G~~v~~  228 (315)
T 3goh_A          216 VPSLKANGHIICI  228 (315)
T ss_dssp             GGGEEEEEEEEEE
T ss_pred             HHHhcCCCEEEEE
Confidence            5667777777776

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=96.00  E-value=0.074  Score=51.68  Aligned_cols=97  Identities=19%  Similarity=0.146  Sum_probs=65.2

Q ss_pred             cEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-----C---hHHHHHHHHH
Q psy6348          46 VLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-----G---RIGREVALRM  117 (333)
Q Consensus        46 I~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-----G---~IG~~vA~~l  117 (333)
                      ++|+|.-+....++-  +++=++.+.+++         |.+       ..|.|+||+|+|-     |   ++..+++..+
T Consensus       157 ~PVINal~d~~HPtQ--aLaDl~TI~E~~---------G~~-------~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~  218 (399)
T 3q98_A          157 PALVNLQCDIDHPTQ--SMADLAWLREHF---------GSL-------ENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM  218 (399)
T ss_dssp             CEEEEEECSSCCHHH--HHHHHHHHHHHH---------SSS-------GGGTTCEEEEECCCCSSCCCCTHHHHHHHHHH
T ss_pred             CcEEeCCCCCcCcHH--HHHHHHHHHHHh---------CCc-------cccCCCEEEEEEecccccCcchHHHHHHHHHH
Confidence            579999765555654  333333333221         111       2478999999973     4   7889999999


Q ss_pred             hhCCCEEEEEcCCC---CHHH-------HHhcCccc---cChhhhccCCCEEEEec
Q psy6348         118 QAFGMKVIGFDPMV---SVED-------AAKLNIAS---LGLEDIWPLADYITVHT  160 (333)
Q Consensus       118 ~~~G~~V~~~d~~~---~~~~-------a~~~gv~~---~~l~ell~~aDvV~l~~  160 (333)
                      ..+|++|....|..   .++.       +++.|..+   .+++|.++++|+|..-+
T Consensus       219 ~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~aDvVytd~  274 (399)
T 3q98_A          219 TRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKS  274 (399)
T ss_dssp             GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECC
T ss_pred             HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEecC
Confidence            99999999998852   2322       22446432   38999999999998754

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=96.00  E-value=0.093  Score=50.24  Aligned_cols=102  Identities=16%  Similarity=0.125  Sum_probs=68.8

Q ss_pred             hhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec-------ChHHH
Q psy6348          39 TAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL-------GRIGR  111 (333)
Q Consensus        39 ~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl-------G~IG~  111 (333)
                      +.|.-..|+|.|. |.+..++-  +++=++.+.++                 +...++.|++++++|.       .++..
T Consensus       151 ~~a~~~~vPVIN~-g~~~HPtQ--aL~Dl~Ti~e~-----------------~G~~dl~g~kv~~~~~~~gd~~~~~Va~  210 (359)
T 3kzn_A          151 SFAKYSPVPVINM-ETITHPCQ--ELAHALALQEH-----------------FGTPDLRGKKYVLTWTYHPKPLNTAVAN  210 (359)
T ss_dssp             HHHHHCSSCEEES-SSSCCHHH--HHHHHHHHHHH-----------------HTSSCCTTCEEEEEECCCSSCCCSHHHH
T ss_pred             HHHHhCCCcccCc-ccccCchH--HHHHHHHHHHH-----------------cCCccccCCeEEEEEeecCCccccchhh
Confidence            3456689999996 55555654  33334433321                 1224688999999976       36889


Q ss_pred             HHHHHHhhCCCEEEEEcCCC----CHH-------HHHhcCcc--c-cChhhhccCCCEEEEec
Q psy6348         112 EVALRMQAFGMKVIGFDPMV----SVE-------DAAKLNIA--S-LGLEDIWPLADYITVHT  160 (333)
Q Consensus       112 ~vA~~l~~~G~~V~~~d~~~----~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~~  160 (333)
                      +....+..+|++|..+-|.+    ..+       .+.+.|..  . .+++++++++|+|..-.
T Consensus       211 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDvvyt~r  273 (359)
T 3kzn_A          211 SALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKS  273 (359)
T ss_dssp             HHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTCSEEEEEC
T ss_pred             hhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCCeEEEEEE
Confidence            99999999999999988742    211       12333432  2 37999999999998765

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.00  E-value=0.0046  Score=60.05  Aligned_cols=86  Identities=16%  Similarity=0.139  Sum_probs=56.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC---CEEEEEcCCCCH--HHHHhc------Cccc--------cChhhhccC--CCEEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG---MKVIGFDPMVSV--EDAAKL------NIAS--------LGLEDIWPL--ADYIT  157 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~~~~--~~a~~~------gv~~--------~~l~ell~~--aDvV~  157 (333)
                      ++++|+|.|.||+.+++.|...|   .+|.++|+....  +.+.++      .+..        .++++++++  +|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999888   499999986532  112221      1211        145677777  89999


Q ss_pred             EecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         158 VHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       158 l~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      .++|.... ..++ +   ..++.|..+++++-
T Consensus        82 n~ag~~~~-~~v~-~---a~l~~g~~vvD~a~  108 (405)
T 4ina_A           82 NIALPYQD-LTIM-E---ACLRTGVPYLDTAN  108 (405)
T ss_dssp             ECSCGGGH-HHHH-H---HHHHHTCCEEESSC
T ss_pred             ECCCcccC-hHHH-H---HHHHhCCCEEEecC
Confidence            99884321 1121 2   22345666777644

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=95.99  E-value=0.014  Score=57.60  Aligned_cols=114  Identities=20%  Similarity=0.115  Sum_probs=67.6

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEE-EEc-------CCC-CHHHHH------hc-------------Ccccc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVI-GFD-------PMV-SVEDAA------KL-------------NIASL  144 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~-~~d-------~~~-~~~~a~------~~-------------gv~~~  144 (333)
                      |.++.|+|+.|-|+|++|+..|+.|...|.+|+ +.|       |.- +.+...      +.             +.+++
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~v  313 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYF  313 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEEE
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceEe
Confidence            567999999999999999999999999999986 344       322 222211      10             12223


Q ss_pred             Chhhhc-cCCCEEEEecCCchhhHhhccHHHHhccC--CCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         145 GLEDIW-PLADYITVHTPLIPQTKNLINAEVLKKCK--KGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       145 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk--~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +-++++ .+||+++-|.     +.+.|+.+....++  +=.+++-.|-+.+ ..++ .+.|.+..|. ++=|.
T Consensus       314 ~~~~i~~~~~DI~iPcA-----~~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~iL~~rGI~-~~PD~  378 (456)
T 3r3j_A          314 ENQKPWNIPCDIAFPCA-----TQNEINENDADLFIQNKCKMIVEGANMPT-HIKA-LHKLKQNNII-LCPSK  378 (456)
T ss_dssp             CSCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHHTCCEEECCSSSCB-CTTH-HHHHHTTTCE-EECHH
T ss_pred             CCccccccCccEEEeCC-----CccchhhHHHHHHHhcCCeEEEecCCCCC-CHHH-HHHHHHCCCE-EeChH
Confidence            334433 3588777663     35667777666652  1234455555553 3322 3556555553 34443

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=95.98  E-value=0.024  Score=49.72  Aligned_cols=68  Identities=18%  Similarity=0.144  Sum_probs=49.8

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHhhCCC--EEEEEcCCCCH-HHHHhcCcc--------ccChhhhccCCCEEEEecCCc
Q psy6348          96 LYGKTLAVLG-LGRIGREVALRMQAFGM--KVIGFDPMVSV-EDAAKLNIA--------SLGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        96 l~gktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~-~~a~~~gv~--------~~~l~ell~~aDvV~l~~P~t  163 (333)
                      +.+|++.|.| .|.||+.+++.|...|+  +|++.++.... +.....++.        ..+++++++..|+|+.+....
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~~   95 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGTT   95 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCcc
Confidence            5689999999 59999999999999999  99999886532 111111221        124667788999999987654

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.96  E-value=0.026  Score=52.55  Aligned_cols=65  Identities=17%  Similarity=0.053  Sum_probs=46.5

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC--CHHHH------HhcCcccc--------Chhhhcc--CCCEEE
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV--SVEDA------AKLNIASL--------GLEDIWP--LADYIT  157 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a------~~~gv~~~--------~l~ell~--~aDvV~  157 (333)
                      ..++|.|.|. |.+|+.+++.|...|++|++.++..  ..+..      ...+++.+        ++.++++  ++|+|+
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi   88 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV   88 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEE
T ss_pred             CCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEE
Confidence            4679999998 9999999999999999999999865  22222      12344321        3456677  888887


Q ss_pred             EecC
Q psy6348         158 VHTP  161 (333)
Q Consensus       158 l~~P  161 (333)
                      .+..
T Consensus        89 ~~a~   92 (346)
T 3i6i_A           89 STVG   92 (346)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            7765

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.96  E-value=0.0081  Score=56.47  Aligned_cols=87  Identities=11%  Similarity=0.049  Sum_probs=55.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhC--CCEEEEEcCCC-CHHHHHhcCccc-cChh-------hhc--cCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAF--GMKVIGFDPMV-SVEDAAKLNIAS-LGLE-------DIW--PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~-~~~~a~~~gv~~-~~l~-------ell--~~aDvV~l~~P~t  163 (333)
                      .|++|.|+|.|.+|...++.++.+  |.+|++.+++. ..+.++++|... ++..       ++-  ...|+|+-++...
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            689999999999999999999999  99999999865 334556666532 1211       111  1456666665421


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      ..     -...++.++++..++.++
T Consensus       250 ~~-----~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          250 ET-----TYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             HH-----HHHHHHHEEEEEEEEECC
T ss_pred             HH-----HHHHHHHhhcCCEEEEeC
Confidence            11     133445556665665553

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.95  E-value=0.013  Score=55.97  Aligned_cols=87  Identities=26%  Similarity=0.379  Sum_probs=61.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc-Ch-------hhhc-----cCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL-GL-------EDIW-----PLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~-~l-------~ell-----~~aDvV~l~~P  161 (333)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|...+ +.       .+.+     ...|+|+-++.
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g  272 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG  272 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence            58899999999999999999999999 899999776 4466777786431 22       1111     14788887776


Q ss_pred             CchhhHhhccHHHHhccCCC-cEEEEcc
Q psy6348         162 LIPQTKNLINAEVLKKCKKG-VRVVNVA  188 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~g-ailIN~a  188 (333)
                      .. .+    -...+..++++ ..++.++
T Consensus       273 ~~-~~----~~~~~~~l~~g~G~iv~~G  295 (378)
T 3uko_A          273 NV-SV----MRAALECCHKGWGTSVIVG  295 (378)
T ss_dssp             CH-HH----HHHHHHTBCTTTCEEEECS
T ss_pred             CH-HH----HHHHHHHhhccCCEEEEEc
Confidence            31 11    14456677775 7777764

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=95.94  E-value=0.018  Score=55.30  Aligned_cols=138  Identities=21%  Similarity=0.217  Sum_probs=87.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK  177 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~  177 (333)
                      -.++-|+|.|.+|+++++.++.+|++|+++|++....          + .+-+..+|-++..-|          .+.+..
T Consensus       199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~----------~-~~~fp~a~~v~~~~p----------~~~~~~  257 (362)
T 3on5_A          199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQC----------E-KHFFPDADEIIVDFP----------ADFLRK  257 (362)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGG----------C-GGGCTTCSEEEESCH----------HHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCcccc----------c-cccCCCceEEecCCH----------HHHHhh
Confidence            3579999999999999999999999999999964221          1 122456675554433          122233


Q ss_pred             --cCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcC---CCcEEEcc---CCCCCcHHHHH
Q psy6348         178 --CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIK---HPKVIVTP---HLGASTKEAQI  249 (333)
Q Consensus       178 --mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~---~pnvi~TP---Hi~~~t~ea~~  249 (333)
                        +.+++.+|=+.++.-.|...|..+|++. ....++=-  .-  .  ....|++   .+.=+-+|   -||+-|.+.  
T Consensus       258 ~~~~~~t~vvv~TH~h~~D~~~L~~aL~~~-~~YiG~iG--Sr--~--R~~rl~~~g~~~~ri~~PIGL~Iga~tP~E--  328 (362)
T 3on5_A          258 FLIRPDDFVLIMTHHFQKDQEILHFLLEKE-LRYIGILG--SK--E--RTRRLLQNRKPPDHLYSPVGLSIDAQGPEE--  328 (362)
T ss_dssp             SCCCTTCEEEECCSCHHHHHHHHHHHSSSC-CSEEEESS--CH--H--HHHHHHTSCCCCTTEESSCSCCSCCCSHHH--
T ss_pred             cCCCCCeEEEEEeCCchhhHHHHHHHhcCC-CCEEEEeC--CH--H--HHHHHHhcCCcHhheECCCCCCCCCCCHHH--
Confidence              5678888888899889999999888773 33333310  00  0  0000110   01114555   467888855  


Q ss_pred             HHHHHHHHHHHHhHcCC
Q psy6348         250 RVAVEIAEQFIALANTN  266 (333)
Q Consensus       250 ~~~~~~~~~i~~~~~~~  266 (333)
                       ++..++.+|.....++
T Consensus       329 -IAvSI~AEiia~~~~~  344 (362)
T 3on5_A          329 -IAISIVAQLIQLIRSR  344 (362)
T ss_dssp             -HHHHHHHHHHHHHHHS
T ss_pred             -HHHHHHHHHHHHHhCC
Confidence             5788888888855553

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=95.93  E-value=0.038  Score=52.28  Aligned_cols=125  Identities=8%  Similarity=-0.044  Sum_probs=80.7

Q ss_pred             hHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCc-cccCCCEEEE-----EecChHHHHH
Q psy6348          40 AATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTG-TELYGKTLAV-----LGLGRIGREV  113 (333)
Q Consensus        40 aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g-~~l~gktvGI-----IGlG~IG~~v  113 (333)
                      .|.-.+|+|+|.-+....++-  +++=++.+.++.                  | ..+. .+|++     ||=+++..++
T Consensus       130 lA~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~------------------g~~~l~-l~ia~a~~~~vGD~rva~Sl  188 (324)
T 1js1_X          130 FIQHSGRPVFSMEAATRHPLQ--SFADLITIEEYK------------------KTARPK-VVMTWAPHPRPLPQAVPNSF  188 (324)
T ss_dssp             HHHHSSSCEEESSCSSCCHHH--HHHHHHHHHHHC------------------SSSSCE-EEEECCCCSSCCCSHHHHHH
T ss_pred             HHhhCCCCEEECCCCCCCcHH--HHHHHHHHHHHc------------------CCCCee-EEEEEEcccccCCcchHHHH
Confidence            344568999998765555654  444444443321                  2 1356 79999     9999999999


Q ss_pred             HHHHhhCCCEEEEEcCCC-C-HHHHHhcCccc-cChhhhccCCCEEEEecCCc--h---------hhHhhccHHHHhccC
Q psy6348         114 ALRMQAFGMKVIGFDPMV-S-VEDAAKLNIAS-LGLEDIWPLADYITVHTPLI--P---------QTKNLINAEVLKKCK  179 (333)
Q Consensus       114 A~~l~~~G~~V~~~d~~~-~-~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t--~---------~t~~li~~~~~~~mk  179 (333)
                      +..+..+|++|....|.. . .+... .+++. .+++|+++++|+|..-.=..  .         ...-.++.+.++.+|
T Consensus       189 ~~~~~~~G~~v~~~~P~~~~~~~~~~-~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~  267 (324)
T 1js1_X          189 AEWMNATDYEFVITHPEGYELDPKFV-GNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN  267 (324)
T ss_dssp             HHHHHTSSSEEEEECCTTCCCCHHHH-TTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS
T ss_pred             HHHHHHCCCEEEEeCCcccCCChhhc-cceEEECCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC
Confidence            999999999999998854 2 22221 24543 38999999999998843211  0         011234555555555


Q ss_pred             CCcEEEEc
Q psy6348         180 KGVRVVNV  187 (333)
Q Consensus       180 ~gailIN~  187 (333)
                       +++|..|
T Consensus       268 -~ai~MHc  274 (324)
T 1js1_X          268 -NAYFMHC  274 (324)
T ss_dssp             -SCEEECC
T ss_pred             -CcEEECC
Confidence             6666655

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.93  E-value=0.0099  Score=56.73  Aligned_cols=37  Identities=38%  Similarity=0.552  Sum_probs=32.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEE-EcCCCCHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIG-FDPMVSVED  135 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~~~~~  135 (333)
                      .|+||.|||+||+.+++++..+|++|++ +||+.+.+.
T Consensus         8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~~d~~~   45 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDPEY   45 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTTCCHHH
T ss_pred             eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCCCChhH
Confidence            4899999999999999999999999888 788765543

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.93  E-value=0.019  Score=52.28  Aligned_cols=65  Identities=18%  Similarity=0.167  Sum_probs=48.1

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC----HHHH------HhcCcccc--------ChhhhccCCCEEEE
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS----VEDA------AKLNIASL--------GLEDIWPLADYITV  158 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~----~~~a------~~~gv~~~--------~l~ell~~aDvV~l  158 (333)
                      .++|.|.|. |.+|+.+++.|.+.|++|++.+|..+    .+..      ...|++.+        ++.++++++|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~   83 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   83 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence            478999997 99999999999999999999988752    2221      12354322        35667888999888


Q ss_pred             ecCC
Q psy6348         159 HTPL  162 (333)
Q Consensus       159 ~~P~  162 (333)
                      +.+.
T Consensus        84 ~a~~   87 (308)
T 1qyc_A           84 TVGS   87 (308)
T ss_dssp             CCCG
T ss_pred             CCcc
Confidence            7753

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.93  E-value=0.0079  Score=55.31  Aligned_cols=39  Identities=26%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             ccccCCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          93 GTELYGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        93 g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +.++.||++.|+| .|.+|+.+++.|...|.+|+++++..
T Consensus       114 ~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~  153 (287)
T 1lu9_A          114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL  153 (287)
T ss_dssp             TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence            3457899999999 89999999999999999999999864

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=95.93  E-value=0.008  Score=55.54  Aligned_cols=87  Identities=23%  Similarity=0.249  Sum_probs=56.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHhh-CCCEEEE-EcCCCCHHHHH--------hcCccc-cChhhhccCCCEEEEecCCchhh
Q psy6348          99 KTLAVLG-LGRIGREVALRMQA-FGMKVIG-FDPMVSVEDAA--------KLNIAS-LGLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~a~--------~~gv~~-~~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      .+|+|+| +|+||+.+++.+.. -++++.+ +|+..+....+        ..|+.. .++++++.++|+|+-++|. +.+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~p-~a~   86 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTLP-EGT   86 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSCH-HHH
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCCH-HHH
Confidence            5899999 89999999988764 5788877 68754211110        114433 3789999999999998762 222


Q ss_pred             HhhccHHHHhccCCCcEEEEccCC
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      ...    ....++.|.-+|-...|
T Consensus        87 ~~~----~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           87 LVH----LDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             HHH----HHHHHHHTCEEEECCCC
T ss_pred             HHH----HHHHHHcCCCEEEECCC
Confidence            222    12224566667765555

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.92  E-value=0.017  Score=57.89  Aligned_cols=110  Identities=17%  Similarity=0.179  Sum_probs=71.3

Q ss_pred             cCCCEEEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH---HHHHhcCcccc---ChhhhccCCCEEEEe--cC-Cchh
Q psy6348          96 LYGKTLAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV---EDAAKLNIASL---GLEDIWPLADYITVH--TP-LIPQ  165 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~---~~a~~~gv~~~---~l~ell~~aDvV~l~--~P-~t~~  165 (333)
                      ..++++-|||.|.+|.+ +|+.|+..|++|.++|.....   +..++.|++..   +.+++..++|+|+..  +| .+|.
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~   96 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV   96 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence            35789999999999996 789999999999999986522   34566787654   345566789999985  44 3333


Q ss_pred             hHh-------hccHH-HHhc--cCCC-cEEEEccCCcccchHhHHhhhhcC
Q psy6348         166 TKN-------LINAE-VLKK--CKKG-VRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       166 t~~-------li~~~-~~~~--mk~g-ailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      ...       ++++. .+..  +++. .+-|--+.|+--...=+...|+..
T Consensus        97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~  147 (524)
T 3hn7_A           97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYA  147 (524)
T ss_dssp             HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHc
Confidence            221       33333 3333  3332 344544567766666666667654

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.90  E-value=0.036  Score=55.26  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=68.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEE--------EcCCC-CHHHHHh----cC-------ccccChhhhc-cCC
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIG--------FDPMV-SVEDAAK----LN-------IASLGLEDIW-PLA  153 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~--------~d~~~-~~~~a~~----~g-------v~~~~l~ell-~~a  153 (333)
                      +|.|+|+.|-|+|++|+..|+.|..+|.+|++        |||.- +.+...+    .|       .+..+ ++++ .+|
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~  319 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDC  319 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccc
Confidence            58999999999999999999999999999987        44432 3332221    12       11111 1333 468


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEec
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD  213 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalD  213 (333)
                      |+++-|.     +.+.|+.+....++ =.+++-.|-+. ...++ .+.|.+..|. ++=|
T Consensus       320 DIliPcA-----~~n~I~~~na~~l~-akiV~EgAN~p-~T~eA-~~iL~~rGIl-~~PD  370 (501)
T 3mw9_A          320 DILIPAA-----SEKQLTKSNAPRVK-AKIIAEGANGP-TTPEA-DKIFLERNIM-VIPD  370 (501)
T ss_dssp             SEEEECS-----SSCCBCTTTGGGCC-CSEEECCSSSC-BCHHH-HHHHHHTTCE-EECH
T ss_pred             eEEeecc-----ccCccCHhHHHHcC-ceEEEeCCCCc-CCHHH-HHHHHHCCCE-EECh
Confidence            8888764     35777777777775 24555566665 34333 3556555553 3434

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=95.89  E-value=0.0096  Score=56.83  Aligned_cols=66  Identities=18%  Similarity=0.192  Sum_probs=47.7

Q ss_pred             CEEEEEe-cChHHHH-HH----HHHhhCC-CEE----------EEEcCCCCH--HHHHhcCcc--ccChhhhccC--CCE
Q psy6348          99 KTLAVLG-LGRIGRE-VA----LRMQAFG-MKV----------IGFDPMVSV--EDAAKLNIA--SLGLEDIWPL--ADY  155 (333)
Q Consensus        99 ktvGIIG-lG~IG~~-vA----~~l~~~G-~~V----------~~~d~~~~~--~~a~~~gv~--~~~l~ell~~--aDv  155 (333)
                      .+||||| +|.||+. .+    ..++..+ ..+          .++|+....  +.+++.|+.  +.++++++++  .|+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~   86 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM   86 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence            4799999 9999998 66    6665443 332          378887633  344567874  3489999865  899


Q ss_pred             EEEecCCch
Q psy6348         156 ITVHTPLIP  164 (333)
Q Consensus       156 V~l~~P~t~  164 (333)
                      |++++|...
T Consensus        87 V~i~tp~~~   95 (383)
T 3oqb_A           87 FFDAATTQA   95 (383)
T ss_dssp             EEECSCSSS
T ss_pred             EEECCCchH
Confidence            999999544

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.86  E-value=0.0082  Score=56.34  Aligned_cols=86  Identities=19%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             CCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhh----hc--cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLED----IW--PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~e----ll--~~aDvV~l~~P~  162 (333)
                      .|++|.|+|.| .||...++.++.+|.+|++.++.. ..+.++++|...+      ++.+    +.  ...|+++-++..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  223 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIGG  223 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSCH
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCCC
Confidence            58899999997 999999999999999999999866 4566677775421      1111    11  246777776642


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                       +.+     .+.+..++++..++.++
T Consensus       224 -~~~-----~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          224 -PDG-----NELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             -HHH-----HHHHHTEEEEEEEEECC
T ss_pred             -hhH-----HHHHHHhcCCCEEEEEe
Confidence             111     22345677777777764

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.85  E-value=0.019  Score=52.14  Aligned_cols=65  Identities=17%  Similarity=0.199  Sum_probs=47.9

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC----CH-HHH------HhcCcccc--------ChhhhccCCCEEE
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV----SV-EDA------AKLNIASL--------GLEDIWPLADYIT  157 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~----~~-~~a------~~~gv~~~--------~l~ell~~aDvV~  157 (333)
                      +++|.|.|. |.+|+.+++.|...|++|++.+|..    .. +..      ...+++.+        ++.++++.+|+|+
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi   81 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI   81 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence            578999997 9999999999999999999998865    11 211      12354321        3567788899988


Q ss_pred             EecCC
Q psy6348         158 VHTPL  162 (333)
Q Consensus       158 l~~P~  162 (333)
                      .+.+.
T Consensus        82 ~~a~~   86 (307)
T 2gas_A           82 CAAGR   86 (307)
T ss_dssp             ECSSS
T ss_pred             ECCcc
Confidence            87764

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.82  E-value=0.0065  Score=57.74  Aligned_cols=87  Identities=14%  Similarity=0.103  Sum_probs=56.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Chhhhcc-----CCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GLEDIWP-----LADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l~ell~-----~aDvV~l~~P~t  163 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|...+      ++.+.+.     ..|+|+-++...
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~~  269 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSP  269 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCCH
Confidence            47899999999999999999999999 799998765 3355566665321      1111111     367777666421


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                       .+    -...+..++++..++.++
T Consensus       270 -~~----~~~~~~~l~~~G~iv~~G  289 (371)
T 1f8f_A          270 -EI----LKQGVDALGILGKIAVVG  289 (371)
T ss_dssp             -HH----HHHHHHTEEEEEEEEECC
T ss_pred             -HH----HHHHHHHHhcCCEEEEeC
Confidence             11    134456666666666664

>1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A*

Probab=95.80  E-value=0.014  Score=55.18  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=61.2

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHH---HHHhc-Cccc--c-------ChhhhccCCCEEEEecCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVE---DAAKL-NIAS--L-------GLEDIWPLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~---~a~~~-gv~~--~-------~l~ell~~aDvV~l~~P~  162 (333)
                      .++++.|.|. |.||+.+++.|...|++|++.++..+..   ..... +++.  .       ++.++++.+|+|+.+...
T Consensus         4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~   83 (352)
T 1xgk_A            4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS   83 (352)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence            3678999995 9999999999999999999998876432   11211 3321  1       256778999999977653


Q ss_pred             chhhHhhccHHHHhccCC-C--cEEEEccCCc
Q psy6348         163 IPQTKNLINAEVLKKCKK-G--VRVVNVARGG  191 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~-g--ailIN~aRg~  191 (333)
                      .....+......++.+++ |  ..||++|...
T Consensus        84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~  115 (352)
T 1xgk_A           84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD  115 (352)
T ss_dssp             TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred             CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence            311122223334433332 3  4788888764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.80  E-value=0.0071  Score=57.47  Aligned_cols=99  Identities=15%  Similarity=0.119  Sum_probs=59.9

Q ss_pred             EEEEEecChHHHHHHHHHhhC---------CCEEEE-EcCCCCHHHHHhcCc--cccChhhhccCCCEEEEecCCchhhH
Q psy6348         100 TLAVLGLGRIGREVALRMQAF---------GMKVIG-FDPMVSVEDAAKLNI--ASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~---------G~~V~~-~d~~~~~~~a~~~gv--~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      ++||||+|.||+.+++.+...         +++|.+ +|+....  .+..+.  -..++++++ +.|+|+.|+|......
T Consensus         5 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~--~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~~a~   81 (332)
T 2ejw_A            5 KIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRK--PRAIPQELLRAEPFDLL-EADLVVEAMGGVEAPL   81 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTS--CCSSCGGGEESSCCCCT-TCSEEEECCCCSHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHH--hhccCcccccCCHHHHh-CCCEEEECCCCcHHHH
Confidence            799999999999999988765         466654 5665422  111121  123788988 9999999998543212


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcc-cchHhHHhhhhcC
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGI-VDENALLDSLKCG  205 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~-vd~~aL~~aL~~g  205 (333)
                      ..    ..+.++.|.-+|...-..+ -.-++|.++.++.
T Consensus        82 ~~----~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           82 RL----VLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             HH----HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             HH----HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            12    2233556655665322222 2345566666655

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.78  E-value=0.0096  Score=57.24  Aligned_cols=92  Identities=15%  Similarity=0.120  Sum_probs=60.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCccccC-----h-hhhc------cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASLG-----L-EDIW------PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~~-----l-~ell------~~aDvV~l~~P~  162 (333)
                      .|++|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|...++     + .+.+      ...|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~  264 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 999999865 33556667764221     1 1111      146777777653


Q ss_pred             chh----------hHhhccHHHHhccCCCcEEEEccC
Q psy6348         163 IPQ----------TKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 t~~----------t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      ...          .... -...+..++++..++.++.
T Consensus       265 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G~  300 (398)
T 2dph_A          265 EAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPGI  300 (398)
T ss_dssp             TCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCSC
T ss_pred             ccccccccccccccHHH-HHHHHHHHhcCCEEEEecc
Confidence            210          0001 1445566777777776643

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=95.77  E-value=0.0099  Score=55.98  Aligned_cols=46  Identities=28%  Similarity=0.450  Sum_probs=38.3

Q ss_pred             CCCEEEEE-ecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVL-GLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|++|.|+ |.|.||...++.++.+|.+|++.++.. ..+.++++|..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~  197 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGAD  197 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCS
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCc
Confidence            68999999 799999999999999999999999855 33555666653

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.77  E-value=0.032  Score=53.15  Aligned_cols=85  Identities=22%  Similarity=0.168  Sum_probs=50.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEEEE-cCCCCH-H-H--------------------HHhcCcccc-ChhhhccCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVIGF-DPMVSV-E-D--------------------AAKLNIASL-GLEDIWPLA  153 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~-~-~--------------------a~~~gv~~~-~l~ell~~a  153 (333)
                      .+|||+|+|+||+.+++.+... +++|.+. |..... . .                    ....++... +.++++.++
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~v   82 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDA   82 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGC
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCC
Confidence            3899999999999999998765 6887665 332111 0 0                    111111111 355666799


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      |+|+.|+|.... ...  .+ -..++.|..+|..
T Consensus        83 DiV~eatg~~~s-~~~--a~-~~~l~aG~~VI~s  112 (343)
T 2yyy_A           83 DIVVDGAPKKIG-KQN--LE-NIYKPHKVKAILQ  112 (343)
T ss_dssp             SEEEECCCTTHH-HHH--HH-HTTTTTTCEEEEC
T ss_pred             CEEEECCCcccc-HHH--HH-HHHHHCCCEEEEC
Confidence            999999984321 111  11 2456777766654

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.75  E-value=0.028  Score=51.52  Aligned_cols=64  Identities=16%  Similarity=0.156  Sum_probs=48.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC-H-HH---HHhcCcccc--------ChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS-V-ED---AAKLNIASL--------GLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~-~~---a~~~gv~~~--------~l~ell~~aDvV~l~~P~  162 (333)
                      ++|.|.|. |.+|+.+++.|...|++|++.+|..+ . ..   ....+++.+        ++.++++++|+|+.+.+.
T Consensus        12 ~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~   89 (318)
T 2r6j_A           12 SKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF   89 (318)
T ss_dssp             CCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence            58999996 99999999999999999999988763 2 11   123455432        356778899999888763

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.74  E-value=0.011  Score=58.62  Aligned_cols=65  Identities=17%  Similarity=0.194  Sum_probs=48.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HH-HHhcCcccc--------Chhhh-ccCCCEEEEecCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-ED-AAKLNIASL--------GLEDI-WPLADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~-a~~~gv~~~--------~l~el-l~~aDvV~l~~P~  162 (333)
                      .++|-|+|+|++|+.+|+.|...|++|++.|..... +. ..++++..+        .|+++ +++||+++.+++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            468999999999999999999999999999986522 22 234555322        24443 6889999888764

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.73  E-value=0.0089  Score=56.36  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=60.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHHhcCcccc-C-----hhh----hc--cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAAKLNIASL-G-----LED----IW--PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~~~gv~~~-~-----l~e----ll--~~aDvV~l~~P~  162 (333)
                      .|.+|.|+|.|.||...++.++.+|. +|++.|+... .+.++++|...+ +     +.+    +.  ...|+|+-++..
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~  245 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD  245 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            48899999999999999999999999 8999998653 456677776421 1     111    11  147777777653


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .+     .-...++.++++..++.++
T Consensus       246 ~~-----~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          246 VH-----TFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             TT-----HHHHHHHHEEEEEEEEECC
T ss_pred             hH-----HHHHHHHHHhcCCEEEEec
Confidence            21     1144556677777777764

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.70  E-value=0.029  Score=53.38  Aligned_cols=90  Identities=22%  Similarity=0.198  Sum_probs=64.3

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc------Chhhhc---cCCCEEEEecCCchhh
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL------GLEDIW---PLADYITVHTPLIPQT  166 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~------~l~ell---~~aDvV~l~~P~t~~t  166 (333)
                      .|++|.|+| .|.||...++.++.+|.+|++.+.....+.++++|...+      ++.+.+   ...|+|+-++.....+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~  262 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTET  262 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhh
Confidence            588999999 799999999999999999999884334566677776431      122211   3589999888642111


Q ss_pred             HhhccHHHHhccCCCcEEEEccCC
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg  190 (333)
                          -...+..++++..++.++..
T Consensus       263 ----~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          263 ----WAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             ----HGGGGBCSSSCCEEEESCCS
T ss_pred             ----hHHHHHhhcCCcEEEEeCCC
Confidence                13445678999999988754

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=95.70  E-value=0.023  Score=53.55  Aligned_cols=91  Identities=14%  Similarity=0.158  Sum_probs=57.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCC----CCHHH--H---Hhc--Cc----cc-cChhhhccCCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPM----VSVED--A---AKL--NI----AS-LGLEDIWPLAD  154 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~----~~~~~--a---~~~--gv----~~-~~l~ell~~aD  154 (333)
                      +||.|+|. |.+|+.++..|...|+       +|..||..    .....  +   .+.  .+    .. .++.+.+++||
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD   85 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDAD   85 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCC
Confidence            58999998 9999999999988776       89999986    21111  1   111  11    11 25778899999


Q ss_pred             EEEEecCCch---hhHh-hc--c----H---HHHhcc-CCCcEEEEccC
Q psy6348         155 YITVHTPLIP---QTKN-LI--N----A---EVLKKC-KKGVRVVNVAR  189 (333)
Q Consensus       155 vV~l~~P~t~---~t~~-li--~----~---~~~~~m-k~gailIN~aR  189 (333)
                      +|+++.....   .++. ++  +    .   +.+... ++++++|+++-
T Consensus        86 ~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SN  134 (329)
T 1b8p_A           86 VALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGN  134 (329)
T ss_dssp             EEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred             EEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccC
Confidence            9998864221   1110 10  1    1   122334 47899999974

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.69  E-value=0.0074  Score=57.07  Aligned_cols=86  Identities=16%  Similarity=0.132  Sum_probs=57.0

Q ss_pred             CCCEEEEE-ecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhhhc-----cCCCEEEEecCCc
Q psy6348          97 YGKTLAVL-GLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLEDIW-----PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~ell-----~~aDvV~l~~P~t  163 (333)
                      .|++|.|+ |.|.||...++.++..|.+|++.++.. ..+.++++|...+      ++.+.+     ...|+++-++.. 
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~-  245 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA-  245 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG-
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH-
Confidence            57899999 679999999999999999999999865 3345566665321      111111     246777766642 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +     .-...+..++++..++.++
T Consensus       246 ~-----~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          246 A-----YFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             G-----GHHHHHHTEEEEEEEEECC
T ss_pred             H-----HHHHHHHHhccCCEEEEEE
Confidence            1     1244556667766666664

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=95.68  E-value=0.03  Score=55.28  Aligned_cols=112  Identities=16%  Similarity=0.073  Sum_probs=69.4

Q ss_pred             CEEEEEecChH-HHHHHHHHhh----C-CCEEEEEcCCC--CHHH-----HH----hcCc----cc-cChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRI-GREVALRMQA----F-GMKVIGFDPMV--SVED-----AA----KLNI----AS-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~I-G~~vA~~l~~----~-G~~V~~~d~~~--~~~~-----a~----~~gv----~~-~~l~ell~~aDvV  156 (333)
                      .||+|||.|.+ |..++..|..    + +.+|..||...  ....     ..    ..+.    .. .++.+.++.||+|
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~V   87 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   87 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEE
Confidence            58999999999 8887655544    3 56899999865  2211     11    1121    11 2567899999999


Q ss_pred             EEecCCchh---hH----------------------------hhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhhh
Q psy6348         157 TVHTPLIPQ---TK----------------------------NLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSLK  203 (333)
Q Consensus       157 ~l~~P~t~~---t~----------------------------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~  203 (333)
                      ++++|....   ++                            .++.  .+.+....|++++||.+-.--+-..++.+...
T Consensus        88 Vitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~~p  167 (450)
T 1s6y_A           88 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRYTK  167 (450)
T ss_dssp             EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHCC
T ss_pred             EEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhCC
Confidence            999994321   11                            1110  12334456899999998766555566655543


Q ss_pred             cCCceEE
Q psy6348         204 CGHCGGA  210 (333)
Q Consensus       204 ~g~i~ga  210 (333)
                      ..++.|.
T Consensus       168 ~~rViG~  174 (450)
T 1s6y_A          168 QEKVVGL  174 (450)
T ss_dssp             CCCEEEC
T ss_pred             CCCEEEe
Confidence            3355554

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=95.67  E-value=0.0098  Score=55.54  Aligned_cols=103  Identities=21%  Similarity=0.321  Sum_probs=66.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCE-EEEEcCCCCHHHHHhcCcccc-Chhhhcc--C-CCEEEEecCCchhhHhhccH
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMK-VIGFDPMVSVEDAAKLNIASL-GLEDIWP--L-ADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~-V~~~d~~~~~~~a~~~gv~~~-~l~ell~--~-aDvV~l~~P~t~~t~~li~~  172 (333)
                      .++.|+|. |++|+.+++.+...|++ |...+|....+  +-.|+... +++++..  . .|++++++|. +.+...+ +
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~g~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~~DvaIi~vp~-~~~~~~v-~   89 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEYGTKVVAGVTPGKGGS--EVHGVPVYDSVKEALAEHPEINTSIVFVPA-PFAPDAV-Y   89 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHCTTCCEEEECCCG-GGHHHHH-H
T ss_pred             CEEEEECCCCCHHHHHHHHHHhCCCcEEEEeCCCCCCc--eECCEeeeCCHHHHhhcCCCCCEEEEecCH-HHHHHHH-H
Confidence            35777799 99999999999988998 34667653211  12466554 7899887  5 9999999994 3444443 2


Q ss_pred             HHHhccCCCcE-EEEccCC-cccchHhHHhhhhcCCce
Q psy6348         173 EVLKKCKKGVR-VVNVARG-GIVDENALLDSLKCGHCG  208 (333)
Q Consensus       173 ~~~~~mk~gai-lIN~aRg-~~vd~~aL~~aL~~g~i~  208 (333)
                      +..+   .|.- +|..+.| ..-+++.|.++.++..+.
T Consensus        90 ea~~---~Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           90 EAVD---AGIRLVVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             HHHH---TTCSEEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             HHHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            2322   3332 4445544 223456788888776554

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.63  E-value=0.023  Score=52.90  Aligned_cols=87  Identities=17%  Similarity=0.123  Sum_probs=56.6

Q ss_pred             CEEEEEe-cChHHHHHHHHHh-hCCCEEEEE-cCCCCHH----HHH-----hcCcccc-ChhhhccCCCEEEEecCCchh
Q psy6348          99 KTLAVLG-LGRIGREVALRMQ-AFGMKVIGF-DPMVSVE----DAA-----KLNIASL-GLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~-~~G~~V~~~-d~~~~~~----~a~-----~~gv~~~-~l~ell~~aDvV~l~~P~t~~  165 (333)
                      .+|+|+| +|+||+.+++.+. .-++++.+. |+..+..    ..+     ..|+... ++++++.++|+|+-..+. +.
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~p-~a  100 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQP-QA  100 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSCH-HH
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCCH-HH
Confidence            4899999 9999999999876 457887664 7653211    111     2344443 799999999999977651 22


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      +.    ......++.|.-+|-.+.|
T Consensus       101 ~~----~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A          101 SV----LYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             HH----HHHHHHHHHTCEEEECCCC
T ss_pred             HH----HHHHHHHHcCCCEEEECCC
Confidence            22    1122235567777766666

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.63  E-value=0.012  Score=53.26  Aligned_cols=62  Identities=21%  Similarity=0.273  Sum_probs=46.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--------cChhhhccC-CCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--------LGLEDIWPL-ADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--------~~l~ell~~-aDvV~l~~P  161 (333)
                      .+++|.|.|.|.||+.+++.|...|++|++.++..+..   ..+++.        .+++++++. +|+|+.+..
T Consensus         2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~   72 (286)
T 3gpi_A            2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPM---PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA   72 (286)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCC---CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcccc---ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence            36789999999999999999999999999999865321   122221        135566766 999987753

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.63  E-value=0.0062  Score=56.94  Aligned_cols=87  Identities=18%  Similarity=0.160  Sum_probs=57.5

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHH-HhcCcccc------Chhhhc-----cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDA-AKLNIASL------GLEDIW-----PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a-~~~gv~~~------~l~ell-----~~aDvV~l~~P~  162 (333)
                      .|+++.|+|. |.||...++.++..|++|++.++.. ..+.+ +++|...+      ++.+.+     ...|+++-++..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g~  228 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVGG  228 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCCc
Confidence            5889999999 9999999999999999999999865 23444 55665321      111111     236777666541


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                       +     .-...+..++++..++.++.
T Consensus       229 -~-----~~~~~~~~l~~~G~iv~~G~  249 (336)
T 4b7c_A          229 -E-----ILDTVLTRIAFKARIVLCGA  249 (336)
T ss_dssp             -H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             -c-----hHHHHHHHHhhCCEEEEEee
Confidence             1     12445566777777776643

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.58  E-value=0.0095  Score=56.57  Aligned_cols=87  Identities=13%  Similarity=0.011  Sum_probs=58.0

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhhhc-----cCCCEEEEecCCc
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLEDIW-----PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~ell-----~~aDvV~l~~P~t  163 (333)
                      .|+++.|+| .|.||...++.++.+|++|++.++.. ..+.++++|...+      ++.+.+     ...|+|+-++.. 
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~-  241 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG-  241 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT-
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH-
Confidence            588999999 79999999999999999999999864 3345566665321      121221     246777776652 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      +     .-...++.|+++..+|.++.
T Consensus       242 ~-----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          242 A-----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             H-----HHHHHHHHEEEEEEEEECCC
T ss_pred             H-----HHHHHHHHHhcCCEEEEEeC
Confidence            1     12345566677767776653

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=95.58  E-value=0.018  Score=54.87  Aligned_cols=87  Identities=13%  Similarity=0.171  Sum_probs=54.2

Q ss_pred             CEEEEEe-cChHHHHHHHHHhh-CCCEEEEEcCCC---CH-HHHH-----hcC---cccc---ChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLG-LGRIGREVALRMQA-FGMKVIGFDPMV---SV-EDAA-----KLN---IASL---GLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~-~G~~V~~~d~~~---~~-~~a~-----~~g---v~~~---~l~ell~~aDvV~l~~P  161 (333)
                      .+|+|+| .|.+|+.+.++|.. -.+++..+....   +. ....     -.|   ....   +.+++++++|+|++|+|
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p   84 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA   84 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence            5899999 59999999999987 456777664322   11 1111     012   1222   34555589999999998


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      . ..++... .   ..++.|+.+|+.|.-
T Consensus        85 ~-~~s~~~~-~---~~~~~g~~vIDlSa~  108 (337)
T 3dr3_A           85 H-EVSHDLA-P---QFLEAGCVVFDLSGA  108 (337)
T ss_dssp             H-HHHHHHH-H---HHHHTTCEEEECSST
T ss_pred             h-HHHHHHH-H---HHHHCCCEEEEcCCc
Confidence            3 2222221 2   224679999999754

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.56  E-value=0.016  Score=54.03  Aligned_cols=45  Identities=22%  Similarity=0.263  Sum_probs=36.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|+++.|.|. |.||..+++.++..|++|++.++.. ..+.++++|.
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~  191 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF  191 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence            5899999998 9999999999999999999999854 2233444553

>3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A*

Probab=95.54  E-value=0.063  Score=49.71  Aligned_cols=68  Identities=19%  Similarity=0.253  Sum_probs=50.2

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC--HHHHH---h-------cCcccc--------ChhhhccCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS--VEDAA---K-------LNIASL--------GLEDIWPLA  153 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~---~-------~gv~~~--------~l~ell~~a  153 (333)
                      .+.+++|.|.|. |.||+.+++.|...|++|++.++...  .....   .       .+++.+        +++++++++
T Consensus        22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~  101 (351)
T 3ruf_A           22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV  101 (351)
T ss_dssp             HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred             CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence            457899999995 99999999999999999999998653  22111   1       233321        356788899


Q ss_pred             CEEEEecCC
Q psy6348         154 DYITVHTPL  162 (333)
Q Consensus       154 DvV~l~~P~  162 (333)
                      |+|+.+...
T Consensus       102 d~Vih~A~~  110 (351)
T 3ruf_A          102 DHVLHQAAL  110 (351)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCcc
Confidence            999887653

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.54  E-value=0.021  Score=53.90  Aligned_cols=86  Identities=15%  Similarity=0.122  Sum_probs=55.6

Q ss_pred             CCCEEEEEecChHHHHH-HHHH-hhCCCE-EEEEcCCCC----HHHHHhcCcccc-----Chhhhc---cCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREV-ALRM-QAFGMK-VIGFDPMVS----VEDAAKLNIASL-----GLEDIW---PLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~v-A~~l-~~~G~~-V~~~d~~~~----~~~a~~~gv~~~-----~l~ell---~~aDvV~l~~P  161 (333)
                      .+++|.|+|.|.+|... ++.+ +.+|.+ |++.++...    .+.++++|...+     ++.++.   ...|+|+-++.
T Consensus       172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~i~~~~gg~Dvvid~~g  251 (357)
T 2b5w_A          172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVEDVPDVYEQMDFIYEATG  251 (357)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGGHHHHSCCEEEEEECSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHHHHHhCCCCCEEEECCC
Confidence            34899999999999999 9999 999997 999998765    466677776432     111110   13566666554


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      .. .+    -...++.++++..++.+
T Consensus       252 ~~-~~----~~~~~~~l~~~G~iv~~  272 (357)
T 2b5w_A          252 FP-KH----AIQSVQALAPNGVGALL  272 (357)
T ss_dssp             CH-HH----HHHHHHHEEEEEEEEEC
T ss_pred             Ch-HH----HHHHHHHHhcCCEEEEE
Confidence            21 11    13344555666555555

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.53  E-value=0.018  Score=56.78  Aligned_cols=84  Identities=29%  Similarity=0.379  Sum_probs=61.0

Q ss_pred             ccCCCEEEEEecCh----------HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcC--cccc-ChhhhccCCCEEEEecC
Q psy6348          95 ELYGKTLAVLGLGR----------IGREVALRMQAFGMKVIGFDPMVSVEDAAKLN--IASL-GLEDIWPLADYITVHTP  161 (333)
Q Consensus        95 ~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~g--v~~~-~l~ell~~aDvV~l~~P  161 (333)
                      .+.|++|+|+|+--          =...+++.|...|.+|.+|||....+....++  +.++ +++++++++|.|+++++
T Consensus       330 ~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~  409 (444)
T 3vtf_A          330 GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATA  409 (444)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSC
T ss_pred             ccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccC
Confidence            47899999999862          36778999999999999999987443333333  4444 68899999999999986


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      - ++-+.+ +      + ++.++++.
T Consensus       410 h-~ef~~l-d------~-~~~vv~D~  426 (444)
T 3vtf_A          410 W-PQYEGL-D------Y-RGKVVVDG  426 (444)
T ss_dssp             C-GGGGGS-C------C-TTCEEEES
T ss_pred             C-HHHhCC-C------c-CCCEEEEC
Confidence            3 333322 1      2 45677774

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.52  E-value=0.0079  Score=58.88  Aligned_cols=109  Identities=14%  Similarity=0.175  Sum_probs=69.2

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHhcCcccc---ChhhhccCCCEEEEecC---Cchh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV---EDAAKLNIASL---GLEDIWPLADYITVHTP---LIPQ  165 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~gv~~~---~l~ell~~aDvV~l~~P---~t~~  165 (333)
                      ++.+|++.|||+|..|.+.|+.|+..|++|.++|.+...   ...+ .|++..   ...+.+..+|.|++.-.   .++.
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~   80 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS   80 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence            357899999999999999999999999999999976522   2233 566543   12455668999988732   2232


Q ss_pred             hHh-------hccHH-HH-hccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         166 TKN-------LINAE-VL-KKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       166 t~~-------li~~~-~~-~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ...       ++.+- .+ ..++...+-|--+.|+--...-|...|++
T Consensus        81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~  128 (439)
T 2x5o_A           81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  128 (439)
T ss_dssp             HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            222       23322 22 22444445554456666655556666655

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=95.52  E-value=0.0089  Score=56.14  Aligned_cols=63  Identities=13%  Similarity=0.125  Sum_probs=45.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEE-EcCCC--CHHHH----HhcCc--c-ccChhhhcc--CCCEEEEecCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIG-FDPMV--SVEDA----AKLNI--A-SLGLEDIWP--LADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~-~d~~~--~~~~a----~~~gv--~-~~~l~ell~--~aDvV~l~~P~  162 (333)
                      .++||||+|.+|+..++.+ .-+.+|.+ +|+..  ..+.+    ++.|+  . +.+++++++  +.|+|++++|.
T Consensus         3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~   77 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVF   77 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSH
T ss_pred             eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence            4899999999999777766 66788775 67764  22222    23354  2 348999986  49999999984

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.51  E-value=0.009  Score=56.12  Aligned_cols=35  Identities=31%  Similarity=0.465  Sum_probs=32.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.++..
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~  199 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP  199 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence            68899999999999999999999999 999999853

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.49  E-value=0.019  Score=54.54  Aligned_cols=31  Identities=29%  Similarity=0.470  Sum_probs=25.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhC---CCEEEEEcC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF---GMKVIGFDP  129 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~---G~~V~~~d~  129 (333)
                      .+|||+|+|+||+.+.+.|...   .++|.+...
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            4799999999999999988653   589886644

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.46  E-value=0.019  Score=54.78  Aligned_cols=46  Identities=22%  Similarity=0.276  Sum_probs=37.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|++|.|+|.|.+|...++.++.+| .+|++.++.. ..+.++++|..
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~  242 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD  242 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc
Confidence            4789999999999999999999999 6999999865 33455666653

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=95.44  E-value=0.027  Score=55.61  Aligned_cols=108  Identities=16%  Similarity=0.124  Sum_probs=67.4

Q ss_pred             CCEEEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEe--cCC-chhhH--
Q psy6348          98 GKTLAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVH--TPL-IPQTK--  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~--~P~-t~~t~--  167 (333)
                      .|++.|||+|..|.+ +|+.|+..|++|.++|...+.  +..++.|+...  ...+.++.+|+|++.  +|. ++...  
T Consensus        18 ~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~a~~vv~s~~i~~~~~~~~~a   97 (475)
T 1p3d_A           18 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAIKDDNPELVTS   97 (475)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHH
Confidence            478999999999997 999999999999999987643  23455676553  112345789998886  321 22111  


Q ss_pred             ---h--hccH-HHH-hccCC-CcEEEEccCCcccchHhHHhhhhcC
Q psy6348         168 ---N--LINA-EVL-KKCKK-GVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       168 ---~--li~~-~~~-~~mk~-gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                         +  ++.. +.+ ..++. ..+-|--+.|+--...-|...|++.
T Consensus        98 ~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~  143 (475)
T 1p3d_A           98 KQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQA  143 (475)
T ss_dssp             HHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             HHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence               1  2222 222 22221 2344444567766666677777653

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.44  E-value=0.014  Score=54.38  Aligned_cols=86  Identities=15%  Similarity=0.089  Sum_probs=55.4

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhh----hc--cCCCEEEEecCC
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLED----IW--PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~e----ll--~~aDvV~l~~P~  162 (333)
                      .|+++.|+| .|.||...++.++..|.+|++.++.. ..+.++++|...+      ++.+    +.  ...|+|+-++..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  219 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVGQ  219 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSCG
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCCh
Confidence            588999999 79999999999999999999999865 3345556664321      1111    11  246666665542


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                       +     .-...+..++++..++.++
T Consensus       220 -~-----~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          220 -D-----TWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             -G-----GHHHHHTTEEEEEEEEECC
T ss_pred             -H-----HHHHHHHHhcCCCEEEEEe
Confidence             1     1134455666666666653

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=95.43  E-value=0.019  Score=56.10  Aligned_cols=85  Identities=18%  Similarity=0.164  Sum_probs=59.4

Q ss_pred             CCCEEEEEecC----------hHHHHHHHHHhhCCCEEEEEcCCCCHHHH----HhcC--------cccc-ChhhhccCC
Q psy6348          97 YGKTLAVLGLG----------RIGREVALRMQAFGMKVIGFDPMVSVEDA----AKLN--------IASL-GLEDIWPLA  153 (333)
Q Consensus        97 ~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a----~~~g--------v~~~-~l~ell~~a  153 (333)
                      .|++|+|+|+.          .-...+++.|...|.+|.+|||..+....    +.++        ..++ ++.+.+++|
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS  391 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence            68999999997          46788999999999999999997422110    1111        1233 678889999


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      |+|++++.- ++-+.+ +   .+.|+ +.+++|+
T Consensus       392 d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~  419 (436)
T 1mv8_A          392 DVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL  419 (436)
T ss_dssp             SEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred             cEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence            999999874 333322 1   34555 5788876

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.43  E-value=0.026  Score=52.22  Aligned_cols=106  Identities=13%  Similarity=0.054  Sum_probs=72.1

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCch----------
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIP----------  164 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~----------  164 (333)
                      +.|++|.|+|........++.|...|++|..+.-.  .+.....|.... ++.+.++++|+|+...|...          
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~--~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a   82 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFD--QLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS   82 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCT--TSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecc--ccccccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence            56889999999999999999999999999877421  111112233332 46778899999987544321          


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      .+...++++.++.++++.+++    .++ |..++.+++.+..+.
T Consensus        83 ~~~~~~~~~~l~~~~~l~~i~----~g~-~~~d~~~~~~~~gi~  121 (300)
T 2rir_A           83 NEEVVLKQDHLDRTPAHCVIF----SGI-SNAYLENIAAQAKRK  121 (300)
T ss_dssp             SSCEECCHHHHHTSCTTCEEE----ESS-CCHHHHHHHHHTTCC
T ss_pred             cCCccchHHHHhhcCCCCEEE----Eec-CCHHHHHHHHHCCCE
Confidence            122336788889999988877    233 666755666666554

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=95.42  E-value=0.038  Score=56.47  Aligned_cols=129  Identities=17%  Similarity=0.176  Sum_probs=83.1

Q ss_pred             hCCcEEEECCCC-CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCc-cccCCCEEEEEecChHHHHHHHHHhhC
Q psy6348          43 RKGVLVLNAPGG-NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTG-TELYGKTLAVLGLGRIGREVALRMQAF  120 (333)
Q Consensus        43 ~~gI~V~n~p~~-n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~l~~~  120 (333)
                      +.+-..++-... +..-.||.+.-+-|-+.|             |+--...| ..|.+++|.|||+|.+|..+|+.|...
T Consensus       282 kl~~~~~~l~~~~dp~~la~~~~~Lnlklm~-------------wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~a  348 (615)
T 4gsl_A          282 KLAPRVVDLSSLLDPLKIADQSVDLNLKLMK-------------WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAW  348 (615)
T ss_dssp             CSCCEEEECHHHHCHHHHHHHHHHHHHHHHH-------------HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHT
T ss_pred             CcceeEEeccccCCHHHHHhhhhhhhhHHHH-------------HhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHc
Confidence            444566666443 566778877777555544             32111112 368999999999999999999999999


Q ss_pred             CC-EEEEEcCCC-------------------CH-HHH----Hhc--Cccc--c----------------------Chhhh
Q psy6348         121 GM-KVIGFDPMV-------------------SV-EDA----AKL--NIAS--L----------------------GLEDI  149 (333)
Q Consensus       121 G~-~V~~~d~~~-------------------~~-~~a----~~~--gv~~--~----------------------~l~el  149 (333)
                      |. ++..+|...                   .+ +.+    .+.  +++.  .                      .++++
T Consensus       349 GVG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iNP~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~~l  428 (615)
T 4gsl_A          349 GVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLRAL  428 (615)
T ss_dssp             TCCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHCTTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhCCCcEEEEeeccccccCccccchhhhcCCHHHHHHH
Confidence            97 788888643                   11 111    111  1111  1                      23567


Q ss_pred             ccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         150 WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       150 l~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      ++++|+|+.|+- +.+++.+++.....   .+..+|+.+
T Consensus       429 l~~~DlVvd~tD-n~~tR~~ln~~c~~---~~~PlI~aa  463 (615)
T 4gsl_A          429 IKEHDIIFLLVD-SRESRWLPSLLSNI---ENKTVINAA  463 (615)
T ss_dssp             HHHCSEEEECCS-SGGGTHHHHHHHHH---TTCEEEEEE
T ss_pred             hhcCCEEEecCC-CHHHHHHHHHHHHH---cCCeEEEEE
Confidence            889999998874 67788888776554   345577764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.42  E-value=0.04  Score=52.25  Aligned_cols=86  Identities=14%  Similarity=0.108  Sum_probs=58.9

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhh-CCCEEEEEcCCC-CHHHHHhcCcccc-----Chhhhc-----cCCCEEEEecCCc
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQA-FGMKVIGFDPMV-SVEDAAKLNIASL-----GLEDIW-----PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~-~G~~V~~~d~~~-~~~~a~~~gv~~~-----~l~ell-----~~aDvV~l~~P~t  163 (333)
                      .|++|.|+| .|.+|...++.++. .|.+|++.++.. ..+.++++|...+     ++.+.+     ...|+|+-++.. 
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~-  249 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHT-  249 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCH-
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCc-
Confidence            588999999 89999999999998 599999999865 3456677776422     121211     247777776641 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      +.   . -...++.++++..++.+
T Consensus       250 ~~---~-~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          250 DK---H-AAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             HH---H-HHHHHHHSCTTCEEEEC
T ss_pred             hh---h-HHHHHHHhcCCCEEEEE
Confidence            11   1 14455667887777766

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.42  E-value=0.073  Score=47.60  Aligned_cols=38  Identities=21%  Similarity=0.315  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEec-Ch--HHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGL-GR--IGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~--IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .++.||++-|.|. |.  ||+.+|+.|...|++|++.++..
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   43 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE   43 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence            3578999999998 45  99999999999999999998764

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.41  E-value=0.017  Score=55.36  Aligned_cols=92  Identities=16%  Similarity=0.133  Sum_probs=60.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCccccC------hhhhc------cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASLG------LEDIW------PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~~------l~ell------~~aDvV~l~~P~  162 (333)
                      .|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+..++      +.+.+      ...|+|+-++..
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G~  264 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVGF  264 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence            58899999999999999999999999 799998865 33566777764321      11111      246888777753


Q ss_pred             chhh-----H-----hhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQT-----K-----NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t-----~-----~li~~~~~~~mk~gailIN~a  188 (333)
                      ....     .     .-.-...+..++++..++.++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G  300 (398)
T 1kol_A          265 EARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG  300 (398)
T ss_dssp             TCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred             cccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence            2100     0     001134556677777777665

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.41  E-value=0.042  Score=52.32  Aligned_cols=85  Identities=15%  Similarity=0.202  Sum_probs=51.0

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhC-CCEEEEE-cCC-CC-HHHHHhc-------------Ccccc--ChhhhccCCCEEEE
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAF-GMKVIGF-DPM-VS-VEDAAKL-------------NIASL--GLEDIWPLADYITV  158 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~-G~~V~~~-d~~-~~-~~~a~~~-------------gv~~~--~l~ell~~aDvV~l  158 (333)
                      .+|||+| +|.||+.+.+.|... .+++.+. +.. .. ......+             .....  +.++ +.++|+|++
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~   83 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS   83 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence            4899999 899999999998764 3577666 322 11 1111111             11122  3344 478999999


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      |+|.. .+..+. .   ..++.|+.+|+.+.
T Consensus        84 atp~~-~s~~~a-~---~~~~aG~~VId~s~  109 (350)
T 2ep5_A           84 ALPNE-LAESIE-L---ELVKNGKIVVSNAS  109 (350)
T ss_dssp             CCCHH-HHHHHH-H---HHHHTTCEEEECSS
T ss_pred             CCChH-HHHHHH-H---HHHHCCCEEEECCc
Confidence            99832 222221 2   22456888888764

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.40  E-value=0.013  Score=54.82  Aligned_cols=86  Identities=13%  Similarity=0.038  Sum_probs=57.0

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhh----hc--cCCCEEEEecCC
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLED----IW--PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~e----ll--~~aDvV~l~~P~  162 (333)
                      .|+++.|+| .|.||...++.++.+|.+|++.++.. ..+.++++|...+      ++.+    +.  ...|+++-++..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  227 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVGK  227 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCGG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCCh
Confidence            588999999 89999999999999999999999855 3345566665321      1111    11  246777766542


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                       +     .-...+..++++..++.++
T Consensus       228 -~-----~~~~~~~~l~~~G~iv~~G  247 (334)
T 3qwb_A          228 -D-----TFEISLAALKRKGVFVSFG  247 (334)
T ss_dssp             -G-----GHHHHHHHEEEEEEEEECC
T ss_pred             -H-----HHHHHHHHhccCCEEEEEc
Confidence             1     1244556667766666664

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.37  E-value=0.037  Score=50.71  Aligned_cols=65  Identities=11%  Similarity=0.217  Sum_probs=48.6

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-C---HHHH------HhcCcccc--------ChhhhccCCCEEEE
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-S---VEDA------AKLNIASL--------GLEDIWPLADYITV  158 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~---~~~a------~~~gv~~~--------~l~ell~~aDvV~l  158 (333)
                      .++|.|.|. |.+|+.+++.|.+.|++|++.++.. +   .+..      ...+++.+        ++.++++.+|+|+.
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~   83 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVIS   83 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEE
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEE
Confidence            468999996 9999999999999999999998875 2   2211      22354321        46678899999988


Q ss_pred             ecCC
Q psy6348         159 HTPL  162 (333)
Q Consensus       159 ~~P~  162 (333)
                      +...
T Consensus        84 ~a~~   87 (321)
T 3c1o_A           84 ALPF   87 (321)
T ss_dssp             CCCG
T ss_pred             CCCc
Confidence            8763

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=95.36  E-value=0.023  Score=56.10  Aligned_cols=106  Identities=14%  Similarity=0.123  Sum_probs=63.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEEE-EcCCCCHH--HHHhc-C----------------------ccc-cChhhhc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVIG-FDPMVSVE--DAAKL-N----------------------IAS-LGLEDIW  150 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~--~a~~~-g----------------------v~~-~~l~ell  150 (333)
                      -++||||+|.||+.+++.+... +++|.+ +|+.....  .+++. |                      ... .++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            4899999999999999888653 677655 57765321  22222 4                      122 3789998


Q ss_pred             c--CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCC-cccchHhHHhhhhcCCce
Q psy6348         151 P--LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG-GIVDENALLDSLKCGHCG  208 (333)
Q Consensus       151 ~--~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg-~~vd~~aL~~aL~~g~i~  208 (333)
                      +  +.|+|++++|... ...   +-....|+.|.-++...-. ....-+.|.++-++..+.
T Consensus       104 ~d~dIDaVviaTp~p~-~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          104 SNPLIDVIIDATGIPE-VGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             TCTTCCEEEECSCCHH-HHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             cCCCCCEEEEcCCChH-HHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            7  5899999998532 111   2233445666666632211 112234566666554443

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=95.35  E-value=0.033  Score=48.26  Aligned_cols=64  Identities=13%  Similarity=0.091  Sum_probs=46.2

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc---------cChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS---------LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~---------~~l~ell~~aDvV~l~~P~t  163 (333)
                      ++|.|.| .|.||+.+++.|.+.|++|++.++........ .+++.         .++.++++++|+|+.+....
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~~~~d~vi~~ag~~   74 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQY-NNVKAVHFDVDWTPEEMAKQLHGMDAIINVSGSG   74 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCCC-TTEEEEECCTTSCHHHHHTTTTTCSEEEECCCCT
T ss_pred             CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhhc-CCceEEEecccCCHHHHHHHHcCCCEEEECCcCC
Confidence            3789999 69999999999999999999999865321100 12211         13556788899999887644

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=95.33  E-value=0.028  Score=51.05  Aligned_cols=64  Identities=20%  Similarity=0.038  Sum_probs=48.8

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCC-CEEEEEcCCCCHHH---HHhcCcccc--------ChhhhccCCCEEEEecC
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFG-MKVIGFDPMVSVED---AAKLNIASL--------GLEDIWPLADYITVHTP  161 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~---a~~~gv~~~--------~l~ell~~aDvV~l~~P  161 (333)
                      .|+|.|.|. |.||+.+++.|.+.| ++|++.++......   ....+++.+        ++.++++.+|+|+.+.+
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~   81 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN   81 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence            578999998 999999999999888 99999998764321   223354321        35677899999998765

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.32  E-value=0.021  Score=51.40  Aligned_cols=94  Identities=15%  Similarity=0.154  Sum_probs=58.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC--CCEEEEEcCCCCH-HHHHhcCcccc--------ChhhhccCCCEEEEecCCchhh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF--GMKVIGFDPMVSV-EDAAKLNIASL--------GLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a~~~gv~~~--------~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      |++.|.|. |.||+.+++.|...  |++|++.++.... ......+++.+        +++++++++|+|+.+.......
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~~~~~   80 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISGPHYDN   80 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCCCCSCH
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCCCCcCc
Confidence            46888987 99999999999988  9999999986532 22223344321        3567888999998776532110


Q ss_pred             -Hhhc-cHHHHhccC-CC-cEEEEccCCcc
Q psy6348         167 -KNLI-NAEVLKKCK-KG-VRVVNVARGGI  192 (333)
Q Consensus       167 -~~li-~~~~~~~mk-~g-ailIN~aRg~~  192 (333)
                       .++. ....++.++ .+ ..+|.+|....
T Consensus        81 ~~n~~~~~~l~~a~~~~~~~~~v~~Ss~~~  110 (287)
T 2jl1_A           81 TLLIVQHANVVKAARDAGVKHIAYTGYAFA  110 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEEETTG
T ss_pred             hHHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence             0111 112222222 23 37888877554

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.32  E-value=0.013  Score=54.98  Aligned_cols=45  Identities=24%  Similarity=0.299  Sum_probs=36.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHH-hcCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS-VEDAA-KLNI  141 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~-~~gv  141 (333)
                      .|+++.|+|. |.||..+++.++..|++|++.++... .+.++ ++|.
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~  202 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGF  202 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCC
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC
Confidence            5889999997 99999999999999999999998642 23444 4554

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.32  E-value=0.041  Score=53.59  Aligned_cols=87  Identities=14%  Similarity=0.089  Sum_probs=62.8

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Ch------------------------h--
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GL------------------------E--  147 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l------------------------~--  147 (333)
                      .|++|.|+|. |.||...++.++..|.+|++.++.. ..+.++++|...+ +.                        +  
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  299 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV  299 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence            5899999998 9999999999999999999988654 3355667776422 11                        1  


Q ss_pred             -hh-ccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         148 -DI-WPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       148 -el-l~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                       ++ -...|+|+-++..  .    .-...+..|+++..+|+++.
T Consensus       300 ~~~~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          300 VEKAGREPDIVFEHTGR--V----TFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHSSCCSEEEECSCH--H----HHHHHHHHSCTTCEEEESCC
T ss_pred             HHHhCCCceEEEECCCc--h----HHHHHHHHHhcCCEEEEEec
Confidence             11 1358999888752  1    12456677899999998864

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=95.31  E-value=0.033  Score=55.28  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=67.5

Q ss_pred             CCEEEEEecChHHHH-HHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc---ChhhhccCCCEEEEe--cCC-chhhH-
Q psy6348          98 GKTLAVLGLGRIGRE-VALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL---GLEDIWPLADYITVH--TPL-IPQTK-  167 (333)
Q Consensus        98 gktvGIIGlG~IG~~-vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~---~l~ell~~aDvV~l~--~P~-t~~t~-  167 (333)
                      .|++.|||+|..|.+ +|+.|+..|++|.++|...+.  +..++.|+...   +. +.++.+|+|++.  +|. ++... 
T Consensus        19 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s~~i~~~~p~~~~   97 (491)
T 2f00_A           19 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNPVTQQLMNLGATIYFNHRP-ENVRDASVVVVSSAISADNPEIVA   97 (491)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCG-GGGTTCSEEEECTTCCTTCHHHHH
T ss_pred             CCEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHCCCEEECCCCH-HHcCCCCEEEECCCCCCCCHHHHH
Confidence            468999999999997 999999999999999987644  23455676543   23 345789998886  321 22211 


Q ss_pred             ----h--hccH-HHH-hccCCC-cEEEEccCCcccchHhHHhhhhcC
Q psy6348         168 ----N--LINA-EVL-KKCKKG-VRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       168 ----~--li~~-~~~-~~mk~g-ailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                          +  ++.. +.+ ..++.. .+-|--+.|+--...-|...|++.
T Consensus        98 a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~  144 (491)
T 2f00_A           98 AHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEA  144 (491)
T ss_dssp             HHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             HHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence                1  2222 222 223322 333444567766666677777653

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=95.31  E-value=0.025  Score=51.04  Aligned_cols=64  Identities=11%  Similarity=0.040  Sum_probs=47.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCCCCHH-HHHhcCcccc--------ChhhhccCCCEEEEecCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPMVSVE-DAAKLNIASL--------GLEDIWPLADYITVHTPL  162 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~~~~-~a~~~gv~~~--------~l~ell~~aDvV~l~~P~  162 (333)
                      ++|.|.|. |.||+.+++.|... |.+|++.++..+.. .....+++.+        +++++++.+|+|+.+.+.
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~   75 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI   75 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred             CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence            36889995 99999999999987 99999998865321 1122344321        466789999999988764

>2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A*

Probab=95.30  E-value=0.038  Score=50.75  Aligned_cols=66  Identities=18%  Similarity=0.178  Sum_probs=46.1

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH---HHHHhc----Ccccc--------ChhhhccC--CCEEEE
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV---EDAAKL----NIASL--------GLEDIWPL--ADYITV  158 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~---~~a~~~----gv~~~--------~l~ell~~--aDvV~l  158 (333)
                      .||++.|.|. |.||+.+++.|...|++|++.++....   ......    ++..+        +++++++.  .|+|+.
T Consensus         2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~d~vih   81 (345)
T 2z1m_A            2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFASWRLKELGIENDVKIIHMDLLEFSNIIRTIEKVQPDEVYN   81 (345)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTTHHHHHTTCTTTEEECCCCTTCHHHHHHHHHHHCCSEEEE
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccccccHhhccccCceeEEECCCCCHHHHHHHHHhcCCCEEEE
Confidence            5789999998 999999999999999999999987532   122222    23221        23455654  599888


Q ss_pred             ecCC
Q psy6348         159 HTPL  162 (333)
Q Consensus       159 ~~P~  162 (333)
                      +...
T Consensus        82 ~A~~   85 (345)
T 2z1m_A           82 LAAQ   85 (345)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            7653

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.30  E-value=0.087  Score=48.23  Aligned_cols=67  Identities=18%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-------cCccc---------cChhhhccCCCEE
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-------LNIAS---------LGLEDIWPLADYI  156 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-------~gv~~---------~~l~ell~~aDvV  156 (333)
                      .+.|+++.|.|. |.||+.+++.|...|++|++.++.... +....       .+++.         .+++++++++|+|
T Consensus         8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~v   87 (342)
T 1y1p_A            8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGV   87 (342)
T ss_dssp             SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEE
Confidence            467899999998 999999999999999999999986422 11110       12211         1355677789999


Q ss_pred             EEecC
Q psy6348         157 TVHTP  161 (333)
Q Consensus       157 ~l~~P  161 (333)
                      +.+..
T Consensus        88 ih~A~   92 (342)
T 1y1p_A           88 AHIAS   92 (342)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            87764

>4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A*

Probab=95.29  E-value=0.02  Score=53.07  Aligned_cols=65  Identities=23%  Similarity=0.183  Sum_probs=46.0

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc--------cChhhhccCCCEEEEecCC
Q psy6348          93 GTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS--------LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        93 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~--------~~l~ell~~aDvV~l~~P~  162 (333)
                      ..+..+|+|.|.|. |.||+.+++.|...|++|++.++....     .++..        .+++++++++|+|+.+...
T Consensus        14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~   87 (347)
T 4id9_A           14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAF   87 (347)
T ss_dssp             -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----SCCSEEESCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred             ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----CCccEEecCcCCHHHHHHHHhCCCEEEECCcc
Confidence            35678999999998 999999999999999999999987533     22221        1356788899999877653

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.28  E-value=0.027  Score=49.24  Aligned_cols=64  Identities=17%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhC--CCEEEEEcCCCCHHHHHhc--Cccc--------cChhhhccCCCEEEEecC
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAF--GMKVIGFDPMVSVEDAAKL--NIAS--------LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~a~~~--gv~~--------~~l~ell~~aDvV~l~~P  161 (333)
                      ..++++.|.|. |.||+.+++.|...  |++|++.++..  ......  ++..        .++++++++.|+|+.+..
T Consensus         2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~--~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   78 (253)
T 1xq6_A            2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSA--QGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   78 (253)
T ss_dssp             CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCH--HHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCC--CchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence            35789999995 99999999999998  89999999854  222221  2221        135677889999988765

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.26  E-value=0.032  Score=52.04  Aligned_cols=38  Identities=24%  Similarity=0.393  Sum_probs=33.6

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+..
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHHHcCCCEEEEECCCc
Confidence            46899999999999999999999998886 788888654

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=95.23  E-value=0.06  Score=50.53  Aligned_cols=99  Identities=17%  Similarity=0.219  Sum_probs=61.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHhh---CCCEEEEEcCCCC-HHHHHh---cCc--ccc-----ChhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLG-LGRIGREVALRMQA---FGMKVIGFDPMVS-VEDAAK---LNI--ASL-----GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~---~G~~V~~~d~~~~-~~~a~~---~gv--~~~-----~l~ell~~aDvV~l~~P~t  163 (333)
                      +||+||| .|.||+.+|..|..   +.-++..+|.... ...+.+   ...  ...     +..+.+++||+|+++.+..
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~~   80 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVA   80 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCCC
Confidence            4899999 89999999998864   4568999998652 112211   111  111     3567899999999997532


Q ss_pred             --h-hhH--------hhcc--HHHHhccCCCcEEEEccCCcccchHhHH
Q psy6348         164 --P-QTK--------NLIN--AEVLKKCKKGVRVVNVARGGIVDENALL  199 (333)
Q Consensus       164 --~-~t~--------~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~  199 (333)
                        + .++        .++.  .+.+....|++++++++  .++|.-..+
T Consensus        81 rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence              1 111        1111  11223346889999995  455554433

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=95.21  E-value=0.028  Score=55.44  Aligned_cols=106  Identities=14%  Similarity=0.159  Sum_probs=63.1

Q ss_pred             CEEEEEecChHHHHHHHHHhh----------CCCEEEE-EcCCCCHHHHHhcCccc-cChhhhcc--CCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQA----------FGMKVIG-FDPMVSVEDAAKLNIAS-LGLEDIWP--LADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~----------~G~~V~~-~d~~~~~~~a~~~gv~~-~~l~ell~--~aDvV~l~~P~t~  164 (333)
                      .++||||+|.||+.+++.+..          .+.+|.+ +|+..........+... .++++++.  +.|+|+.++|...
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp~~~   90 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIGGLE   90 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCCSST
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCCCch
Confidence            489999999999999876652          4666655 56644222111113333 37899986  5899999999532


Q ss_pred             hhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCce
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHCG  208 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i~  208 (333)
                      .-..+    ..+.|+.|.-++..--.-.. .-++|.++.++..+.
T Consensus        91 ~h~~~----~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~  131 (444)
T 3mtj_A           91 PAREL----VMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVM  131 (444)
T ss_dssp             THHHH----HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHH----HHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCe
Confidence            22222    23445667666644332222 225677776665543

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=95.19  E-value=0.04  Score=52.09  Aligned_cols=108  Identities=20%  Similarity=0.281  Sum_probs=64.6

Q ss_pred             CEEEEEecChHHHHHHHHHhh-------CCCEEEEE-cCCCC-------HH----HHHhcC-cc--ccChhhhcc--CCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-------FGMKVIGF-DPMVS-------VE----DAAKLN-IA--SLGLEDIWP--LAD  154 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-------~G~~V~~~-d~~~~-------~~----~a~~~g-v~--~~~l~ell~--~aD  154 (333)
                      -+|||+|+|.||+.+++.+..       .+++|.+. |+...       .+    ..++.| +.  ..+.++++.  +.|
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iD   84 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAAD   84 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCS
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCC
Confidence            379999999999999998875       35666654 55421       11    122234 22  126677774  589


Q ss_pred             EEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCccc-chHhHHhhhhcCCc
Q psy6348         155 YITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV-DENALLDSLKCGHC  207 (333)
Q Consensus       155 vV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~v-d~~aL~~aL~~g~i  207 (333)
                      +|+.|+|...... ..-......++.|.-+|...-+.+. .-+.|.++.++...
T Consensus        85 vVVe~T~~~~~~~-pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~  137 (325)
T 3ing_A           85 LLVDCTPASRDGV-REYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQNSK  137 (325)
T ss_dssp             EEEECCCCCSSSH-HHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEECCCCccccc-hHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCC
Confidence            9999998532111 0012344556788888876554442 34556666665544

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=95.18  E-value=0.037  Score=55.04  Aligned_cols=64  Identities=20%  Similarity=0.149  Sum_probs=47.0

Q ss_pred             CCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCC
Q psy6348          98 GKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~  162 (333)
                      +++|.|.| .|.||+.+++.|...|++|++.++............. ..+.+.+.++|+|+.+...
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~~~~v~~d~~-~~~~~~l~~~D~Vih~A~~  211 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPKPGKRFWDPL-NPASDLLDGADVLVHLAGE  211 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCCTTCEECCTT-SCCTTTTTTCSEEEECCCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCccceeeccc-chhHHhcCCCCEEEECCCC
Confidence            78999999 5999999999999999999999987643211000111 1356778899999877653

>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*

Probab=95.18  E-value=0.14  Score=46.33  Aligned_cols=38  Identities=24%  Similarity=0.162  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEec-Ch--HHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGL-GR--IGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~--IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..+.||++-|.|. |.  ||+++|+.|...|++|++.++..
T Consensus        22 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~   62 (280)
T 3nrc_A           22 GFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQ   62 (280)
T ss_dssp             CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             cccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCch
Confidence            4688999999996 45  99999999999999999999875

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.18  E-value=0.017  Score=53.78  Aligned_cols=45  Identities=20%  Similarity=0.217  Sum_probs=35.9

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCc
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv  141 (333)
                      .|+++.|+| .|.||..+++.++..|.+|++.++... .+.++++|.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~  186 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA  186 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC
Confidence            488999999 699999999999999999999998642 233444443

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=95.17  E-value=0.023  Score=57.99  Aligned_cols=91  Identities=20%  Similarity=0.186  Sum_probs=63.0

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-------------------CH-HHH----Hhc--Cccc---
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-------------------SV-EDA----AKL--NIAS---  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-------------------~~-~~a----~~~--gv~~---  143 (333)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|...                   .+ +.+    ++.  +++.   
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~  402 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV  402 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence            46889999999999999999999999998 788887541                   11 111    111  1211   


Q ss_pred             ---------------------cChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         144 ---------------------LGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       144 ---------------------~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                                           ..++++++++|+|+.++. +.+++.+++......   +..+|+.+
T Consensus       403 ~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa  464 (598)
T 3vh1_A          403 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  464 (598)
T ss_dssp             CCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             eccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence                                 123567889999999886 667888887765542   44677654

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=95.17  E-value=0.036  Score=52.86  Aligned_cols=89  Identities=25%  Similarity=0.315  Sum_probs=59.8

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CH-------------------HHH----Hhc--Ccc--c-
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SV-------------------EDA----AKL--NIA--S-  143 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~-------------------~~a----~~~--gv~--~-  143 (333)
                      ..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. +.                   +.+    .+.  .++  . 
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~v~~~  193 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEI  193 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCCChHHHHHHHHHHHHCCCCeEEEe
Confidence            35789999999999999999999999887 788888643 11                   011    111  111  1 


Q ss_pred             ------cC-hhhhccCCCEEEEecCCchh-hHhhccHHHHhccCCCcEEEEc
Q psy6348         144 ------LG-LEDIWPLADYITVHTPLIPQ-TKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       144 ------~~-l~ell~~aDvV~l~~P~t~~-t~~li~~~~~~~mk~gailIN~  187 (333)
                            .+ +++ ++++|+|+.++- +.. ++..+++...+.   +.-+|..
T Consensus       194 ~~~i~~~~~~~~-~~~~DlVvd~~D-n~~~~r~~ln~~c~~~---~~p~i~~  240 (353)
T 3h5n_A          194 ALNINDYTDLHK-VPEADIWVVSAD-HPFNLINWVNKYCVRA---NQPYINA  240 (353)
T ss_dssp             ECCCCSGGGGGG-SCCCSEEEECCC-CSTTHHHHHHHHHHHT---TCCEEEE
T ss_pred             ecccCchhhhhH-hccCCEEEEecC-ChHHHHHHHHHHHHHh---CCCEEEE
Confidence                  11 455 789999988774 445 888887765543   3346665

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.16  E-value=0.05  Score=51.10  Aligned_cols=84  Identities=11%  Similarity=0.074  Sum_probs=58.7

Q ss_pred             CEEEEE-ecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhhhc------cCCCEEEEecCCch
Q psy6348          99 KTLAVL-GLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLEDIW------PLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~ell------~~aDvV~l~~P~t~  164 (333)
                      +++.|. |.|.||...++.++.+|.+|++.++.. ..+.++++|...+      ++.+.+      ...|+++-++.. +
T Consensus       166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~-~  244 (349)
T 3pi7_A          166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTG-P  244 (349)
T ss_dssp             SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCH-H
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCC-h
Confidence            677665 899999999999999999999999765 4466677776421      121111      258888877652 1


Q ss_pred             hhHhhccHHHHhccCCCcEEEEcc
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .    + ...+..++++..++.++
T Consensus       245 ~----~-~~~~~~l~~~G~iv~~G  263 (349)
T 3pi7_A          245 L----A-SAIFNAMPKRARWIIYG  263 (349)
T ss_dssp             H----H-HHHHHHSCTTCEEEECC
T ss_pred             h----H-HHHHhhhcCCCEEEEEe
Confidence            1    1 45667788888888774

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.12  E-value=0.022  Score=53.48  Aligned_cols=35  Identities=17%  Similarity=0.211  Sum_probs=32.3

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+++.|+|. |.+|..+++.++.+|.+|++.++..
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~  201 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE  201 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999999 9999999999999999999999854

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=95.09  E-value=0.022  Score=53.21  Aligned_cols=91  Identities=19%  Similarity=0.153  Sum_probs=56.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHH--HHhc-------Cc--cc--cChhhhccCCCEEEEec--C
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVED--AAKL-------NI--AS--LGLEDIWPLADYITVHT--P  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a~~~-------gv--~~--~~l~ell~~aDvV~l~~--P  161 (333)
                      .||+|||.|.||+.+|-.|...+.  ++..||.......  +.++       +.  ..  .+--+.+++||+|++..  |
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p   80 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence            489999999999999988876554  8999998542222  2111       11  11  12346789999999986  3


Q ss_pred             Cch-hhHh-hc--cH-------HHHhccCCCcEEEEccC
Q psy6348         162 LIP-QTKN-LI--NA-------EVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       162 ~t~-~t~~-li--~~-------~~~~~mk~gailIN~aR  189 (333)
                      ..| .||. ++  |.       +.+..-.|+++++.++-
T Consensus        81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN  119 (294)
T 2x0j_A           81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence            333 1221 11  11       12333467888888854

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=95.09  E-value=0.016  Score=52.00  Aligned_cols=62  Identities=13%  Similarity=0.173  Sum_probs=45.1

Q ss_pred             EEEEEec-ChHHHHHHHHHhhC--CCEEEEEcCCCCH-HHHHhcCccc--------cChhhhccCCCEEEEecC
Q psy6348         100 TLAVLGL-GRIGREVALRMQAF--GMKVIGFDPMVSV-EDAAKLNIAS--------LGLEDIWPLADYITVHTP  161 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a~~~gv~~--------~~l~ell~~aDvV~l~~P  161 (333)
                      ++.|.|. |.||+.+++.|...  |++|++.++.... ......+++.        .+++++++++|+|+.+..
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~   74 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS   74 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence            4778887 99999999999988  9999999986532 2222334332        135678889999987765

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=95.09  E-value=0.016  Score=55.52  Aligned_cols=85  Identities=11%  Similarity=0.089  Sum_probs=49.0

Q ss_pred             EEEEEecChHHHHHHHHHhhC----CCEEEE-EcCCCCHHHHHhc-Cccc-cChhhhccC--------------------
Q psy6348         100 TLAVLGLGRIGREVALRMQAF----GMKVIG-FDPMVSVEDAAKL-NIAS-LGLEDIWPL--------------------  152 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~----G~~V~~-~d~~~~~~~a~~~-gv~~-~~l~ell~~--------------------  152 (333)
                      ++||||+|.||+.+++.+...    +++|.+ +|+.. .....++ |+.. .++++++.+                    
T Consensus         6 ~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~~-~~~~~~~~gi~~~~~~~e~l~~~~~~~~did~v~e~~~~~~~   84 (358)
T 1ebf_A            6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAER-SLISKDFSPLNVGSDWKAALAASTTKTLPLDDLIAHLKTSPK   84 (358)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSSB-EEECSSCSCCSCTTCHHHHHHTCCCBCCCHHHHHHHHTTCSS
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECCh-hhhccccCCCCccccHHHHHhcccCCCCCHHHHHHHhhhccC
Confidence            799999999999999998875    356654 45422 1111111 3322 234444432                    


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                      .|+|+.|+|.......     ..+.|+.|.-+|...-.
T Consensus        85 ~DvVV~~t~~~~~a~~-----~~~AL~aGkhVVtaNkk  117 (358)
T 1ebf_A           85 PVILVDNTSSAYIAGF-----YTKFVENGISIATPNKK  117 (358)
T ss_dssp             CEEEEECSCCHHHHTT-----HHHHHHTTCEEECCCCG
T ss_pred             CcEEEEcCCChHHHHH-----HHHHHHCCCeEEecCcc
Confidence            2899999985432221     12446677777764333

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=95.08  E-value=0.024  Score=54.81  Aligned_cols=67  Identities=16%  Similarity=0.254  Sum_probs=45.8

Q ss_pred             CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HH-HHHhc-Cc---ccc---ChhhhccCCCEEEE
Q psy6348          91 YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VE-DAAKL-NI---ASL---GLEDIWPLADYITV  158 (333)
Q Consensus        91 ~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~-~a~~~-gv---~~~---~l~ell~~aDvV~l  158 (333)
                      |.+..+.++||+|+|-|..|+.+++.++.+|++|+++| ... +. ..... ..   .+.   .+.++++++|+|+.
T Consensus        17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~   92 (403)
T 3k5i_A           17 FQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA   92 (403)
T ss_dssp             ----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred             EeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence            34555779999999999999999999999999999999 542 11 11110 11   111   35667889999875

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.08  E-value=0.057  Score=51.31  Aligned_cols=88  Identities=10%  Similarity=-0.005  Sum_probs=59.3

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc------Chhhhc-----cCCCEEEEecCCc
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL------GLEDIW-----PLADYITVHTPLI  163 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~------~l~ell-----~~aDvV~l~~P~t  163 (333)
                      -.|++|.|+|. |.+|...++.++.+|.+|++.......+.++++|...+      ++.+.+     ...|+++-++...
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~  242 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV  242 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence            46899999999 89999999999999999998753224566777876421      121111     2378888777531


Q ss_pred             hhhHhhccHHHHhcc-CCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKC-KKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~m-k~gailIN~a  188 (333)
                       .+    -...+..+ +++..++.++
T Consensus       243 -~~----~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          243 -ES----TTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             -HH----HHHHHHHSCTTCEEEEESS
T ss_pred             -HH----HHHHHHHhhcCCCEEEEEe
Confidence             11    13345556 5777777774

>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}

Probab=95.07  E-value=0.022  Score=46.22  Aligned_cols=66  Identities=18%  Similarity=0.202  Sum_probs=44.1

Q ss_pred             CCEEEEEecChHHHHHHHHHhhC-CCEEEEE-cCCCCHHHHHhcCcccc---Chhhhcc--CCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAF-GMKVIGF-DPMVSVEDAAKLNIASL---GLEDIWP--LADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~a~~~gv~~~---~l~ell~--~aDvV~l~~P~t  163 (333)
                      .+++.|||.|..|+.+++.+... |+++++| |.........-.|+...   ++.++++  +.|.|++++|..
T Consensus         4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~   76 (141)
T 3nkl_A            4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSA   76 (141)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence            56899999999999999999764 8998886 54322110011244333   3444443  578999999854

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.03  E-value=0.044  Score=52.40  Aligned_cols=86  Identities=14%  Similarity=0.214  Sum_probs=55.6

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCC-CEEEEEcCCCCH-HHHHh------cCcc--ccChhhhccCCCEEEEecCCchhh
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFG-MKVIGFDPMVSV-EDAAK------LNIA--SLGLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~~~-~~a~~------~gv~--~~~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      -.+|||||. |.+|+++.++|...- .++.......+. ....+      ....  ..+.++++.++|++++|+|..   
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~---   89 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG---   89 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT---
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcH---
Confidence            458999985 999999999998654 466665433211 11110      1222  224556667899999999943   


Q ss_pred             HhhccHHHHhccCCCcEEEEccCC
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg  190 (333)
                         ..++..+.+ .|+.+|+.|.-
T Consensus        90 ---~s~~~~~~~-~g~~VIDlSsd  109 (351)
T 1vkn_A           90 ---ASYDLVREL-KGVKIIDLGAD  109 (351)
T ss_dssp             ---HHHHHHTTC-CSCEEEESSST
T ss_pred             ---HHHHHHHHh-CCCEEEECChh
Confidence               234444555 79999999753

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.99  E-value=0.023  Score=53.28  Aligned_cols=87  Identities=16%  Similarity=0.120  Sum_probs=59.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhC-CCEEEEEcCCC-CHHHHHhcCcccc-----Chh----hhc--cCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAF-GMKVIGFDPMV-SVEDAAKLNIASL-----GLE----DIW--PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~-~~~~a~~~gv~~~-----~l~----ell--~~aDvV~l~~P~t  163 (333)
                      .|.++.|+|.|.+|...++.++.+ |.+|++.|+.. ..+.++++|...+     ++.    ++.  ...|+|+-++...
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~~  250 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGAQ  250 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCCH
Confidence            588999999999999999999988 78999999865 3456677776432     111    111  1577777776532


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .     .-...++.++++..++.++
T Consensus       251 ~-----~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          251 S-----TIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             H-----HHHHHHHHEEEEEEEEECS
T ss_pred             H-----HHHHHHHHHhcCCEEEEEC
Confidence            1     1134556677777777764

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.97  E-value=0.028  Score=51.76  Aligned_cols=63  Identities=19%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             CEEEEEec-ChHHHHHHHHHh-hCCCEEE-EEcCCCCH----HHHH-----hcCccc-cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQ-AFGMKVI-GFDPMVSV----EDAA-----KLNIAS-LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~-~~G~~V~-~~d~~~~~----~~a~-----~~gv~~-~~l~ell~~aDvV~l~~P  161 (333)
                      .+|+|+|+ |+||+.+++.+. .-|+++. ++|+..+.    +..+     ..++.. .++++++.++|+|+-+++
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~   81 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR   81 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC
Confidence            48999999 999999998766 5678877 66765422    1111     112222 268888889999995553

>2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A*

Probab=94.90  E-value=0.022  Score=52.76  Aligned_cols=71  Identities=10%  Similarity=0.064  Sum_probs=51.2

Q ss_pred             CccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHH--HHh-cCccc--------cChhhhcc--CCCEEE
Q psy6348          92 TGTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVED--AAK-LNIAS--------LGLEDIWP--LADYIT  157 (333)
Q Consensus        92 ~g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~-~gv~~--------~~l~ell~--~aDvV~  157 (333)
                      ...++.|+++.|.|. |.||+.+++.|...|++|++.++......  ... .++..        .+++++++  ..|+|+
T Consensus        14 ~~~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~l~~v~~~~~Dl~d~~~~~~~~~~~~~D~vi   93 (330)
T 2pzm_A           14 LVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKREVLPPVAGLSVIEGSVTDAGLLERAFDSFKPTHVV   93 (330)
T ss_dssp             CCSTTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGGGSCSCTTEEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CcccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchhhhhccCCceEEEeeCCCHHHHHHHHhhcCCCEEE
Confidence            456789999999998 99999999999999999999998542211  011 12221        13556777  899998


Q ss_pred             EecCC
Q psy6348         158 VHTPL  162 (333)
Q Consensus       158 l~~P~  162 (333)
                      .+...
T Consensus        94 h~A~~   98 (330)
T 2pzm_A           94 HSAAA   98 (330)
T ss_dssp             ECCCC
T ss_pred             ECCcc
Confidence            87653

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=94.88  E-value=0.038  Score=52.57  Aligned_cols=29  Identities=28%  Similarity=0.492  Sum_probs=24.6

Q ss_pred             EEEEEecChHHHHHHHHHhhC---CCEEEEEc
Q psy6348         100 TLAVLGLGRIGREVALRMQAF---GMKVIGFD  128 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~---G~~V~~~d  128 (333)
                      +|||+|+|+||+.+.+.|...   +++|.+..
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            899999999999999998765   47887654

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=94.82  E-value=0.024  Score=53.79  Aligned_cols=86  Identities=13%  Similarity=0.095  Sum_probs=50.5

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhC---CCEEEEEcCCCCHHH-H--HhcCccccChh-hhccCCCEEEEecCCchhhHhhc
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAF---GMKVIGFDPMVSVED-A--AKLNIASLGLE-DIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~---G~~V~~~d~~~~~~~-a--~~~gv~~~~l~-ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+|+|+| +|.+|+.+.+.|...   .+++.++....+... .  ....+...+++ +.+.++|+|+.|+|... ++...
T Consensus         4 ~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~s~~~~G~~~~~~~~~i~~~~~~~~~~~~vDvVf~a~g~~~-s~~~a   82 (336)
T 2r00_A            4 FNVAIFGATGAVGETMLEVLQEREFPVDELFLLASERSEGKTYRFNGKTVRVQNVEEFDWSQVHIALFSAGGEL-SAKWA   82 (336)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEECTTTTTCEEEETTEEEEEEEGGGCCGGGCSEEEECSCHHH-HHHHH
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEECCCCCCCceeecCceeEEecCChHHhcCCCEEEECCCchH-HHHHH
Confidence            5899999 999999999988765   456766643211110 0  00111111221 24468999999998432 22221


Q ss_pred             cHHHHhccCCCcEEEEccC
Q psy6348         171 NAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aR  189 (333)
                       .   ..++.|+.+|+.+.
T Consensus        83 -~---~~~~~G~~vId~s~   97 (336)
T 2r00_A           83 -P---IAAEAGVVVIDNTS   97 (336)
T ss_dssp             -H---HHHHTTCEEEECSS
T ss_pred             -H---HHHHcCCEEEEcCC
Confidence             1   22456888888764

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.81  E-value=0.036  Score=52.31  Aligned_cols=45  Identities=20%  Similarity=0.329  Sum_probs=36.5

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv  141 (333)
                      .|+++.|.|. |.||..+++.++..|++|++.++... .+.++++|.
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga  216 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA  216 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCC
Confidence            4889999998 99999999999999999999998642 234445553

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.81  E-value=0.059  Score=50.79  Aligned_cols=88  Identities=17%  Similarity=0.102  Sum_probs=58.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCcccc----------Chh----hhc--cCCCEEEE
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNIASL----------GLE----DIW--PLADYITV  158 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv~~~----------~l~----ell--~~aDvV~l  158 (333)
                      .|++|.|+|.|.+|...++.++.+|.+ |++.++.. ..+.+++++-...          ++.    ++.  ...|+|+-
T Consensus       179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid  258 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE  258 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence            478999999999999999999999998 99988765 3344455421110          111    111  25788888


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                      ++... .+    -...+..++++..++.++-
T Consensus       259 ~~g~~-~~----~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          259 CTGVE-SS----IAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CSCCH-HH----HHHHHHHSCTTCEEEECCC
T ss_pred             CCCCh-HH----HHHHHHHhcCCCEEEEEcc
Confidence            77532 11    1445567788888887753

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=94.80  E-value=0.029  Score=52.85  Aligned_cols=35  Identities=29%  Similarity=0.365  Sum_probs=32.1

Q ss_pred             CC--CEEEEEec-ChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348          97 YG--KTLAVLGL-GRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus        97 ~g--ktvGIIGl-G~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      .|  +++.|.|. |.||..+++.++..|. +|++.++..
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~  196 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH  196 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence            46  89999998 9999999999999999 999999864

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.78  E-value=0.031  Score=52.75  Aligned_cols=35  Identities=11%  Similarity=0.060  Sum_probs=32.1

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+++.|+| .|.||..+++.++..|.+|++.++..
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~  197 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ  197 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            478999999 79999999999999999999999854

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=94.77  E-value=0.031  Score=52.44  Aligned_cols=35  Identities=34%  Similarity=0.442  Sum_probs=32.1

Q ss_pred             CCCEEEEEecC-hHHHHHHHHHhhC-CCEEEEEcCCC
Q psy6348          97 YGKTLAVLGLG-RIGREVALRMQAF-GMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG-~IG~~vA~~l~~~-G~~V~~~d~~~  131 (333)
                      .|+++.|+|.| .||..+++.++.. |.+|++.++..
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~  206 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE  206 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH
Confidence            57899999999 9999999999998 99999999754

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=94.77  E-value=0.048  Score=51.78  Aligned_cols=30  Identities=27%  Similarity=0.484  Sum_probs=25.2

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEEEcC
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIGFDP  129 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~  129 (333)
                      +|||+|+|+||+.+.+.|... .++|.+...
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~   33 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence            799999999999999988764 578876644

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=94.73  E-value=0.052  Score=49.34  Aligned_cols=66  Identities=14%  Similarity=0.125  Sum_probs=49.4

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC---HHHH------HhcCcccc--------ChhhhccCCCEEEEe
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS---VEDA------AKLNIASL--------GLEDIWPLADYITVH  159 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~---~~~a------~~~gv~~~--------~l~ell~~aDvV~l~  159 (333)
                      .++|.|.|. |.+|+.+++.|...|++|++.+|..+   .+..      ...+++.+        ++.++++++|+|+.+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~   83 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISA   83 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEEC
Confidence            468999995 99999999999999999999998753   2222      12344322        456788999999988


Q ss_pred             cCCc
Q psy6348         160 TPLI  163 (333)
Q Consensus       160 ~P~t  163 (333)
                      .+..
T Consensus        84 a~~~   87 (313)
T 1qyd_A           84 LAGG   87 (313)
T ss_dssp             CCCS
T ss_pred             Cccc
Confidence            7643

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.72  E-value=0.028  Score=52.46  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=32.0

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+++.|+|. |.||..+++.++..|++|++.++..
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~  180 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE  180 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            4789999995 9999999999999999999999864

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=94.68  E-value=0.11  Score=46.97  Aligned_cols=73  Identities=16%  Similarity=0.161  Sum_probs=47.1

Q ss_pred             EEEEEec-ChHHHHHHHHHhhC-CCEEEE-EcCCCCHHHHHhcCccccChhhhcc-CCCEEEEecCCchhhHhhccHHHH
Q psy6348         100 TLAVLGL-GRIGREVALRMQAF-GMKVIG-FDPMVSVEDAAKLNIASLGLEDIWP-LADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~gv~~~~l~ell~-~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      +|+|+|+ |+||+.+++.+... |+++.+ +|+.             .++++++. .+|+|+-+.+. +.+...    ..
T Consensus         2 kV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~-------------~dl~~~~~~~~DvvIDfT~p-~a~~~~----~~   63 (245)
T 1p9l_A            2 RVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAG-------------DPLSLLTDGNTEVVIDFTHP-DVVMGN----LE   63 (245)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTT-------------CCTHHHHHTTCCEEEECSCT-TTHHHH----HH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccC-------------CCHHHHhccCCcEEEEccCh-HHHHHH----HH
Confidence            7999996 99999999998765 899874 5653             23555554 79999866542 222222    11


Q ss_pred             hccCCCcEEEEccCC
Q psy6348         176 KKCKKGVRVVNVARG  190 (333)
Q Consensus       176 ~~mk~gailIN~aRg  190 (333)
                      ..++.|.-+|-.+.|
T Consensus        64 ~a~~~g~~~VigTTG   78 (245)
T 1p9l_A           64 FLIDNGIHAVVGTTG   78 (245)
T ss_dssp             HHHHTTCEEEECCCC
T ss_pred             HHHHcCCCEEEcCCC
Confidence            224556656665556

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=94.62  E-value=0.14  Score=48.13  Aligned_cols=86  Identities=13%  Similarity=0.188  Sum_probs=57.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEc-CCCC----HHHHHhcCcccc-C--------hhhhcc---CCCEEEE
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFD-PMVS----VEDAAKLNIASL-G--------LEDIWP---LADYITV  158 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d-~~~~----~~~a~~~gv~~~-~--------l~ell~---~aDvV~l  158 (333)
                      .|.+|.|+|. |.+|...++.++.+|.+|++.. +...    .+.++++|...+ +        +.++..   ..|+|+-
T Consensus       167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvid  246 (357)
T 1zsy_A          167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLALN  246 (357)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEEE
T ss_pred             CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEEE
Confidence            5889999998 9999999999999999887764 3322    245667776422 2        222222   3788887


Q ss_pred             ecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         159 HTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       159 ~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      ++. .+.+     .+.++.++++..++.++
T Consensus       247 ~~g-~~~~-----~~~~~~l~~~G~iv~~G  270 (357)
T 1zsy_A          247 CVG-GKSS-----TELLRQLARGGTMVTYG  270 (357)
T ss_dssp             SSC-HHHH-----HHHHTTSCTTCEEEECC
T ss_pred             CCC-cHHH-----HHHHHhhCCCCEEEEEe
Confidence            765 2221     23567788887777764

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=94.59  E-value=0.05  Score=51.52  Aligned_cols=34  Identities=24%  Similarity=0.490  Sum_probs=26.5

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEEEcCCCCH
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIGFDPMVSV  133 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~  133 (333)
                      +|||+|+|+||+.+.+.+... .++|.+.......
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~~~~   37 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDA   37 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCH
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCCCCh
Confidence            799999999999999988653 5788776544333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	333
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	2e-40
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	4e-39
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	1e-35
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	4e-35
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	4e-33
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	7e-24
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	2e-21
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	1e-19
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	2e-15
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	3e-15
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	3e-14
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	6e-14
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	2e-12
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	5e-12
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	9e-10
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	7e-09
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	1e-07
d1v8ba1	163	c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas	5e-07
d2jfga1	93	c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-	3e-06
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	5e-06
d2f1ka2	165	c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S	5e-05
d2g5ca2	171	c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {	1e-04
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	1e-04
d1vpda2	161	c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase	5e-04
d1kjqa2	111	c.30.1.1 (A:2-112) Glycinamide ribonucleotide tran	0.001
d2hmva1	134	c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [T	0.002

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  138 bits (347), Expect = 2e-40
 Identities = 90/187 (48%), Positives = 118/187 (63%), Gaps = 3/187 (1%)

Query: 55  NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVA 114
           N  SA E   +L+ A SR +P    SL+E  W R  ++GTE++GKT+ V+GLGRIG+ VA
Sbjct: 1   NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60

Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
            R+ AFG  V+ +DP VS   AA+L I  L L+D+   AD+I+VH P  P+T  LI+ E 
Sbjct: 61  QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120

Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKV 234
           L K K GV +VN ARGG+VDE AL D++  GH   A LDVF  EP        L +  +V
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTD---SPLFELAQV 177

Query: 235 IVTPHLG 241
           +VTPHLG
Sbjct: 178 VVTPHLG 184

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  135 bits (339), Expect = 4e-39
 Identities = 50/192 (26%), Positives = 89/192 (46%), Gaps = 8/192 (4%)

Query: 57  ISACELTCSLISALSRNVPQGCQSLKEGKW---DRKLYTGTELYGKTLAVLGLGRIGREV 113
           ++  E+   L+   +R   +G + ++   W   +     G +L  KTL + G G IG+ +
Sbjct: 3   VATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQAL 62

Query: 114 ALRMQAFGMKVIGFDPMVSVEDAAKLNIASL--GLEDIWPLADYITVHTPLIPQTKNLIN 171
           A R Q F M +  FD   +         A+    L+ +  ++ + +++ P  P+T+   N
Sbjct: 63  AKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN 122

Query: 172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKH 231
              +K   +G  VVN ARG +VD   ++ +L+ G    A  DVF  EP  +E        
Sbjct: 123 KATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINE---GYYDL 179

Query: 232 PKVIVTPHLGAS 243
           P   + PH+G++
Sbjct: 180 PNTFLFPHIGSA 191

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score =  125 bits (315), Expect = 1e-35
 Identities = 54/189 (28%), Positives = 89/189 (47%), Gaps = 6/189 (3%)

Query: 57  ISACELTCSLISALSRNVPQGCQSLKEGKWDRK--LYTGTELYGKTLAVLGLGRIGREVA 114
           IS  E    +I +L RN     +  ++G W+    +    +L    +  +  GRIG  V 
Sbjct: 1   ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLN--IASLGLEDIWPLADYITVHTPLIPQTKNLINA 172
            R+  F + +   D     E   K          ED++P+ D +T++ PL P+T+++IN 
Sbjct: 61  RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120

Query: 173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP 232
           E LK  K+G  +VN ARG + D +A+  +L+ G   G A DV+  +P   +        P
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDH--PWRTMP 178

Query: 233 KVIVTPHLG 241
              +TPH+ 
Sbjct: 179 YNGMTPHIS 187

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score =  124 bits (311), Expect = 4e-35
 Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 4/189 (2%)

Query: 55  NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVA 114
           N  S  EL    +  L R VP+       G  ++      E  GK L ++G G IG ++ 
Sbjct: 1   NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60

Query: 115 LRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV 174
           +  ++ GM V  +D    +       +  L   D+  ++D +++H P  P TKN++ A+ 
Sbjct: 61  ILAESLGMYVYFYDIENKLPLGNATQVQHL--SDLLNMSDVVSLHVPENPSTKNMMGAKE 118

Query: 175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTF--ELIKHP 232
           +   K G  ++N +RG +VD  AL D+L   H  GAA+DVF  EP  +   F   L +  
Sbjct: 119 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFD 178

Query: 233 KVIVTPHLG 241
            V++TPH+G
Sbjct: 179 NVLLTPHIG 187

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score =  119 bits (298), Expect = 4e-33
 Identities = 68/187 (36%), Positives = 98/187 (52%), Gaps = 9/187 (4%)

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDR-------KLYTGTELYGKTLAVLGLGRIGREV 113
           + T   I  L R      Q+L+EG   +              + G+TL ++GLGR+G+ V
Sbjct: 5   DSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAV 64

Query: 114 ALRMQAFGMKVIGFDPMVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINA 172
           ALR +AFG  V+ +DP +S      L +  +  L+D+   +D +T+H  L     +LIN 
Sbjct: 65  ALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND 124

Query: 173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHP 232
             +K+ ++G  +VN ARGG+VDE AL  +LK G   GAALDV   EP    Q   L   P
Sbjct: 125 FTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQG-PLKDAP 183

Query: 233 KVIVTPH 239
            +I TPH
Sbjct: 184 NLICTPH 190

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 94.9 bits (234), Expect = 7e-24
 Identities = 55/193 (28%), Positives = 89/193 (46%), Gaps = 12/193 (6%)

Query: 58  SACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRM 117
           +  E      + + R      + +           G E+  + + V+G G IG+     M
Sbjct: 3   AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62

Query: 118 QAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK 177
           + FG KVI +D   + E   K       L+D++  AD I++H P +P   ++IN E + K
Sbjct: 63  EGFGAKVITYDIFRNPELEKK-GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121

Query: 178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFE---------- 227
            K+ V +VNV+RG +VD +A++  L  G   G A+DV+  E     + +E          
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181

Query: 228 -LIKHPKVIVTPH 239
            LI  P V+VTP 
Sbjct: 182 DLIARPNVLVTPK 194

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 88.4 bits (217), Expect = 2e-21
 Identities = 56/196 (28%), Positives = 90/196 (45%), Gaps = 14/196 (7%)

Query: 58  SACELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALR 116
           +  E   +    L RN+ +    L+ G +++   + G EL  +T+ V+G G IG+     
Sbjct: 4   AIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKL 63

Query: 117 MQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK 176
            + FG KVI +DP     D    +  SL  ED++  +D I +H P I Q  ++IN     
Sbjct: 64  FKGFGAKVIAYDPYPMKGDHPDFDYVSL--EDLFKQSDVIDLHVPGIEQNTHIINEAAFN 121

Query: 177 KCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTF---------- 226
             K G  V+N AR  ++D  A+L +LK G   G  +D +  E                  
Sbjct: 122 LMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLW 181

Query: 227 -ELIKHPKVIVTPHLG 241
            EL+  P V+++PH+ 
Sbjct: 182 DELLGMPNVVLSPHIA 197

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 82.9 bits (203), Expect = 1e-19
 Identities = 45/181 (24%), Positives = 72/181 (39%), Gaps = 6/181 (3%)

Query: 61  ELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAF 120
           E   +L+ A  + + Q  + +K G + R +     + G+ +AVLGLG IG  V   + A 
Sbjct: 6   EFALALLLAPYKRIIQYGEKMKRGDYGRDVEIP-LIQGEKVAVLGLGEIGTRVGKILAAL 64

Query: 121 GMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKK 180
           G +V GF            N     L +            PL   T+ L+  + L    +
Sbjct: 65  GAQVRGFSRTPKEGPWRFTNSLEEALREA----RAAVCALPLNKHTRGLVKYQHLALMAE 120

Query: 181 GVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHL 240
               VNV R  ++D + +L  LK       A DV+      ++   E    P V+ TP +
Sbjct: 121 DAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDA-EFFSLPNVVATPWV 179

Query: 241 G 241
            
Sbjct: 180 A 180

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 17/122 (13%), Positives = 32/122 (26%), Gaps = 29/122 (23%)

Query: 1   KYDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
               +     +++TAE L +   L+ +     G+D++   +       V    G N    
Sbjct: 28  DLGNVEAALVSRITAEELAKMPRLKFIQVVTAGLDHLPWESIPPHVT-VAGNAGSNGYGN 86

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQA 119
             +   ++    R                            L     G   R +A R   
Sbjct: 87  ERVWRQMVMEAVR---------------------------NLITYATGGRPRNIAKREDY 119

Query: 120 FG 121
            G
Sbjct: 120 IG 121

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 69.2 bits (169), Expect = 3e-15
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 1   KYDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           +  G ++     +T E L +   L+++ R G+G DNID+ +A   G+ V N P  +  S 
Sbjct: 43  EAVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVYSE 102

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKW 86
            + +  +    +R + +          
Sbjct: 103 -QASIEMREEAAREIRRAITGRIPDSL 128

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 66.5 bits (162), Expect = 3e-14
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 2   YDGLVVRSDTKVTAEVLQ---ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
            DG+VV       AE LQ    + +  +     GVDNID+  A   G  + N P     S
Sbjct: 46  ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPV---YS 102

Query: 59  ACELTCSLISALSRNVPQGCQSLKEGKWDRKL 90
                   +   + +        KE +   K+
Sbjct: 103 YTTHAVRNMVVKAFDNNLELVEGKEAETPVKV 134

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 66.9 bits (163), Expect = 6e-14
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 1   KYDGLVVRS--DTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFI 57
             D ++ +      +T E +  + NL++   AG G D++DL +A  + V V      N  
Sbjct: 89  DADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNST 148

Query: 58  SACELTCS--------LISALSRNVPQGCQSLKEGKW 86
           +                     R +      ++ G  
Sbjct: 149 TLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 61.6 bits (149), Expect = 2e-12
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 2   YDGLVVRSDTKVTAEVLQAS---NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFIS 58
           +DG+     T   A V +      ++ +     G DNID+TA  + G+ + N P     +
Sbjct: 45  FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETA 104

Query: 59  ACELTCSLISALSRNVPQGCQSLKEG 84
              +    +  L   + +G  S +  
Sbjct: 105 VHNMVYFSLQHLVDFLTKGETSTEVT 130

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 60.2 bits (145), Expect = 5e-12
 Identities = 33/87 (37%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 1   KYDGLVVRSDTKVTAEVL-QASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
           + D L+VRS T V AEVL  A  L++V RAG G+DN+D+ AAT +GVLV+NAP     + 
Sbjct: 42  EADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAE 101

Query: 60  CELTCSLISALSRNVPQGCQSLKEGKW 86
            +       A S  +    + + +   
Sbjct: 102 AQDRAGTDVAESVRLALAGEFVPDAVN 128

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 9e-10
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 6/111 (5%)

Query: 92  TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-SLGLEDIW 150
           T   + GK   V G G +G+  A  ++ FG +VI  +        A +       +++  
Sbjct: 18  TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEAC 77

Query: 151 PLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV-ARGGIVDENALLD 200
              +             ++I     ++ K    V N+      +D   L +
Sbjct: 78  QEGNIFVTT----TGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNE 124

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 51.1 bits (122), Expect = 7e-09
 Identities = 18/73 (24%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 2   YDGLVVRSDTKVTAEVLQ--ASNLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISA 59
            D L++  + K   EV+     N++ +     G D+IDL A   +G+ V NAP G   + 
Sbjct: 45  VDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAR 104

Query: 60  CELTCSLISALSR 72
            ++       +  
Sbjct: 105 EDMAHQANDLIDA 117

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)

Query: 2   YDGLVVRSDTKVTAEVLQAS-NLQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISAC 60
              + +RS T +T +V+ A+  L  +G    G + +DL AA ++G+ V NAP  +   A 
Sbjct: 48  AHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQ 107

Query: 61  ELTCSLISALSRNVPQGCQSLKEG 84
           E     ++           +L   
Sbjct: 108 ENIGLEVAGKLIKYSDNGSTLSAV 131

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 29/130 (22%), Positives = 48/130 (36%), Gaps = 11/130 (8%)

Query: 77  GC-QSLKEG-KWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP-MVSV 133
           GC  SL +G        T   + GK + + G G +G+  A  M+  G +V   +   +  
Sbjct: 4   GCRHSLPDGLMRA----TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICA 59

Query: 134 EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIV 193
             A       + L++I    D+    T       ++I  E L K K    V N+      
Sbjct: 60  IQAVMEGFNVVTLDEIVDKGDFFITCTGN----VDVIKLEHLLKMKNNAVVGNIGHFDDE 115

Query: 194 DENALLDSLK 203
            +   L + K
Sbjct: 116 IQVNELFNYK 125

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} Length = 93

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 95  ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA---SLGLEDIWP 151
           +  GK + ++GLG  G        A G+     D  ++     KL  A     G  +   
Sbjct: 2   DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEW 61

Query: 152 LADY-ITVHTPLIPQTKNLINAEVLKKCKKGVRVV 185
           L    + V +P I       +  +      G+ +V
Sbjct: 62  LMAADLIVASPGIALA----HPSLSAAADAGIEIV 92

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 42.8 bits (100), Expect = 5e-06
 Identities = 12/95 (12%), Positives = 27/95 (28%), Gaps = 1/95 (1%)

Query: 95  ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLE-DIWPLA 153
           +L  +   ++G G +    A  +   G ++         +     N   L L    +   
Sbjct: 9   QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDET 68

Query: 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA 188
              +    +     + +N  V    +      NV 
Sbjct: 69  LLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

 Score = 40.9 bits (94), Expect = 5e-05
 Identities = 25/160 (15%), Positives = 41/160 (25%), Gaps = 7/160 (4%)

Query: 101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHT 160
           + V+GLG IG  +A  ++  G  +IG     S  + A              L     +  
Sbjct: 3   IGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIF 62

Query: 161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPP 220
              P    L   E L        +V                L  G  GG  +        
Sbjct: 63  LCTPIQLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMA-GTAAQG 121

Query: 221 KSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAEQFI 260
                  L  +   ++TP      +       +      +
Sbjct: 122 IDGAEENLFVNAPYVLTPTEYTDPE------QLACLRSVL 155

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 8/164 (4%)

Query: 99  KTLAVLGLGRIGREVALRMQAFGM--KVIGFDP-MVSVEDAAKLNIASLGLEDI--WPLA 153
           + + ++G+G +G   A  ++  G   K+ G+D    S+  A  L I   G   I      
Sbjct: 2   QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDF 61

Query: 154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALD 213
               V      +T   I  ++     +   V +           L + L     GG  + 
Sbjct: 62  SPDFVMLSSPVRTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIA 121

Query: 214 VFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQIRVAVEIAE 257
              +   +      L +  KVI+TP     T + ++++   + E
Sbjct: 122 GTEKSGVEYSL-DNLYEGKKVILTPT--KKTDKKRLKLVKRVWE 162

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 26/159 (16%), Positives = 52/159 (32%), Gaps = 15/159 (9%)

Query: 81  LKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLN 140
           ++   +   L        KT AV G G +G      +  FG K +     V   D +  N
Sbjct: 19  IENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVA----VGESDGSIWN 74

Query: 141 IASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLD 200
              +  +++    D+   H  ++   K  I    + +    + +   +   +   NA   
Sbjct: 75  PDGIDPKELE---DFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNA--P 129

Query: 201 SLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPH 239
            +K       A        P + Q  ++     ++V P 
Sbjct: 130 RVKAKIIAEGA------NGPTTPQADKIFLERNIMVIPD 162

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

 Score = 37.9 bits (87), Expect = 5e-04
 Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 4/92 (4%)

Query: 101 LAVLGLGRIGREVALRMQAFGMKVIGFD--PMVSVEDAAKLNIASLGLEDIWPLADYITV 158
           +  +GLG +G+ ++  +   G  ++  D  P    +  A     +   + I    D I  
Sbjct: 3   VGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIIT 62

Query: 159 HTPLIPQTKNLINAE--VLKKCKKGVRVVNVA 188
             P  P  K +   E  +++  K G  +++++
Sbjct: 63  MLPNSPHVKEVALGENGIIEGAKPGTVLIDMS 94

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} Length = 111

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 98  GKTLAVLGLGRIGREVALRMQAFGMKVIGFDP--MVSVEDAAKLNIASLGLEDIWPLADY 155
              + +LG G +G+EVA+  Q  G++VI  D          A  +     + D   L   
Sbjct: 11  ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSHVI-NMLDGDALRRV 69

Query: 156 ITVHTP-LIPQTKNLINAEVLKKC-KKGVRVVNVAR 189
           + +  P  I      I  ++L +  ++G+ VV  AR
Sbjct: 70  VELEKPHYIVPEIEAIATDMLIQLEEEGLNVVPCAR 105

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} Length = 134

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 99  KTLAVLGLGRIGREVALRMQAFGMKVIGFDPM 130
           K  AV+GLGR G  +   +   G +V+  D  
Sbjct: 1   KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	333
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.88
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.79
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.78
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.78
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.77
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.76
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.71
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.68
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.68
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.54
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.54
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.45
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.45
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.44
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.3
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.21
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.15
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.02
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.99
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.97
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.94
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.83
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.79
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.77
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.75
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	98.65
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.58
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.58
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.55
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	98.55
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.55
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.52
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	98.4
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	98.37
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	98.36
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	98.24
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	98.21
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.15
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.14
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.11
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.96
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.84
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.81
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.8
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.74
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.72
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.71
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	97.67
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.6
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.6
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.58
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.56
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.54
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.53
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.53
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.5
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	97.47
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.44
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	97.43
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.42
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.41
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.4
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	97.39
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	97.38
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	97.37
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	97.35
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.35
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	97.32
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.3
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.3
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.29
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	97.29
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.27
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	97.22
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	97.19
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	97.17
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.17
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	97.12
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	97.09
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.08
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	97.07
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.07
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.05
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.02
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.01
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.99
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.98
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.97
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	96.96
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.94
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.94
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	96.85
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	96.83
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.83
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.81
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.79
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.75
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	96.75
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	96.69
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	96.69
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	96.63
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	96.59
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.59
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.54
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	96.51
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	96.5
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.43
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.43
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.41
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	96.33
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.32
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	96.27
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	96.23
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	96.2
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.14
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	96.13
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.12
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.03
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.01
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.94
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	95.91
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.89
d1ygya4	135	D-3-phosphoglycerate dehydrogenase SerA {Mycobacte	95.89
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	95.77
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	95.76
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.75
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.75
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	95.73
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	95.72
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.72
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	95.66
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	95.61
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.58
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.54
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.53
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	95.52
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	95.51
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.35
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.28
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	95.28
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	95.25
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	95.17
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.15
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	95.11
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.11
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.1
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	95.07
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	95.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.0
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.93
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	94.79
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	94.77
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	94.71
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.71
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.64
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.62
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	94.59
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	94.57
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	94.56
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	94.55
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	94.53
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.46
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	94.42
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.41
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.38
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.36
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.25
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.25
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.24
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	94.23
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	94.23
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	94.21
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	94.2
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.2
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	94.19
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.16
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	94.15
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.08
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	94.06
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.05
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	93.99
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	93.94
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.93
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	93.9
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.86
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	93.77
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.76
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	93.74
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.74
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	93.73
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.7
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	93.66
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.65
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.64
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	93.64
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	93.62
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	93.61
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	93.5
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	93.47
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	93.45
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	93.43
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.42
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.41
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	93.38
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.35
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	93.34
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	93.31
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.3
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.29
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	93.28
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	93.23
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	93.2
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	93.18
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	93.11
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	93.01
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	93.0
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	92.99
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.92
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	92.91
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	92.87
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.79
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	92.65
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	92.62
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.54
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	92.47
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	92.45
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	92.38
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	92.33
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	92.2
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	92.04
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.95
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	91.8
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	91.69
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	91.62
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	91.54
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.48
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	91.37
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	91.3
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	91.29
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	91.09
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	91.01
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.0
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	90.9
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	90.89
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	90.71
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	90.6
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.43
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.24
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	90.22
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.12
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.75
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	89.38
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	89.38
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.37
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	89.34
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	89.25
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.05
d2a35a1	212	Hypothetical protein PA4017 {Pseudomonas aeruginos	88.77
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.7
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.67
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	88.65
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	88.51
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	88.42
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.41
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	88.39
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	88.36
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.31
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	88.13
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	87.89
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	87.76
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	87.61
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	87.47
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	87.3
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.16
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	87.0
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	86.99
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.74
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.64
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.61
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	86.6
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	86.22
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.95
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.34
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	85.16
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.03
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	85.02
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	84.76
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	84.71
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.02
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	83.93
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	83.53
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	83.05
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	82.92
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	82.83
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.51
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	82.44
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	82.44
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	82.25
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	82.23
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	82.17
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.1
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	81.95
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.75
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	81.72
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	81.39
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	81.32
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	81.28
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	81.15

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.4e-54  Score=382.80  Aligned_cols=184  Identities=49%  Similarity=0.779  Sum_probs=177.5

Q ss_pred             CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH
Q psy6348          55 NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE  134 (333)
Q Consensus        55 n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~  134 (333)
                      |+.|||||++++||++.|+++++++.+++|.|.+..+.+.++.||++||+|+|+||+.+|+++++|||+|++|||+.+.+
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~   80 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA   80 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence            78899999999999999999999999999999988888999999999999999999999999999999999999998888


Q ss_pred             HHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         135 DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       135 ~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      .....+++..+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||++||++|+++||+|||
T Consensus        81 ~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV  160 (184)
T d1ygya1          81 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV  160 (184)
T ss_dssp             HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred             HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeC
Confidence            77888888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccchhhcCCCcEEEccCCC
Q psy6348         215 FCEEPPKSEQTFELIKHPKVIVTPHLG  241 (333)
Q Consensus       215 ~~~EP~~~~~~~~L~~~pnvi~TPHi~  241 (333)
                      |++||+++   +||+++|||++|||+|
T Consensus       161 ~~~EP~~~---~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         161 FATEPCTD---SPLFELAQVVVTPHLG  184 (184)
T ss_dssp             CSSSSCSC---CGGGGCTTEEECSSCS
T ss_pred             CCCCCCCC---chHhcCCCEEECCCCC
Confidence            99999764   6999999999999997

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=4.9e-52  Score=368.40  Aligned_cols=185  Identities=27%  Similarity=0.489  Sum_probs=169.1

Q ss_pred             chHHHHHHHHHHHHHhcCCCccchhhhcCcccc---cCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC
Q psy6348          56 FISACELTCSLISALSRNVPQGCQSLKEGKWDR---KLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS  132 (333)
Q Consensus        56 ~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~---~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  132 (333)
                      +.+||||+++|||+++|+++++++.+|+|.|..   ..+.|.++.|||+||||+|+||+.+|+++++|||+|++||++..
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            579999999999999999999999999999963   34568999999999999999999999999999999999999774


Q ss_pred             -HHHHHhc-CccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEE
Q psy6348         133 -VEDAAKL-NIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGA  210 (333)
Q Consensus       133 -~~~a~~~-gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~ga  210 (333)
                       ....... +....++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||
T Consensus        82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a  161 (191)
T d1gdha1          82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA  161 (191)
T ss_dssp             CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred             ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence             3333333 34456899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeccCCCCCCCCccchhhcCCCcEEEccCCCCC
Q psy6348         211 ALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAS  243 (333)
Q Consensus       211 alDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~  243 (333)
                      ++|||++||+.+   +||+++|||++|||+|++
T Consensus       162 ~lDV~~~EP~~~---~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         162 GFDVFAGEPNIN---EGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             EESCCTTTTSCC---TTGGGCTTEEECSSCTTC
T ss_pred             EEECCCCCCCCC---chHHcCCCEEECCccccC
Confidence            999999999654   689999999999999975

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=1.4e-51  Score=365.95  Aligned_cols=185  Identities=36%  Similarity=0.508  Sum_probs=170.9

Q ss_pred             hHHHHHHHHHHHHHhcCCCccchhhhcCccccc-------CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcC
Q psy6348          57 ISACELTCSLISALSRNVPQGCQSLKEGKWDRK-------LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP  129 (333)
Q Consensus        57 ~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~-------~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~  129 (333)
                      ++|||+++++||+++|+++.+++.+|+|.|.+.       ...|.+|+|||+||||+|+||+.+|+++++|||+|++|||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            489999999999999999999999999999764       2468999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         130 MVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       130 ~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      +.........++... ++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~  160 (193)
T d1mx3a1          81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR  160 (193)
T ss_dssp             TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred             cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence            886666666677654 7999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeccCCCCCCCCccchhhcCCCcEEEccCCCC
Q psy6348         209 GAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       209 gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      ||++|||++||.+.. .+||+++|||++|||+|+
T Consensus       161 ~a~lDV~~~EP~~~~-~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         161 GAALDVHESEPFSFS-QGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             EEEESCCSSSSCCTT-SSTTTTCSSEEECSSCTT
T ss_pred             EEEEEcCCCCCCCCC-chhHHcCCCEEEcCCcCc
Confidence            999999999996532 268999999999999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=1e-51  Score=368.65  Aligned_cols=186  Identities=29%  Similarity=0.475  Sum_probs=170.4

Q ss_pred             chHHHHHHHHHHHHHhcCCCccchhhhcCccccc-CCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH
Q psy6348          56 FISACELTCSLISALSRNVPQGCQSLKEGKWDRK-LYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE  134 (333)
Q Consensus        56 ~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~  134 (333)
                      ..|||||++++||++.|+++++++.+++|.|++. .+.|.+|.||||||||+|+||+.+|+++++|||+|++|||+....
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   81 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG   81 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence            4689999999999999999999999999999754 467899999999999999999999999999999999999986432


Q ss_pred             HHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         135 DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       135 ~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                        ....+...++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+++||+|||
T Consensus        82 --~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV  159 (199)
T d1dxya1          82 --DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDT  159 (199)
T ss_dssp             --CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESS
T ss_pred             --hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccc
Confidence              223455679999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC-----------CccchhhcCCCcEEEccCCCCC
Q psy6348         215 FCEEPPK-----------SEQTFELIKHPKVIVTPHLGAS  243 (333)
Q Consensus       215 ~~~EP~~-----------~~~~~~L~~~pnvi~TPHi~~~  243 (333)
                      |++||..           +|.++||+.+|||++|||+||+
T Consensus       160 ~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         160 YEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             CTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             cCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            9999952           3456789999999999999986

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.2e-50  Score=361.08  Aligned_cols=185  Identities=29%  Similarity=0.413  Sum_probs=170.1

Q ss_pred             hHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHH
Q psy6348          57 ISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDA  136 (333)
Q Consensus        57 ~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a  136 (333)
                      +|||||+++++|++.|+++.+++.+++|.|.+..+.|++|+||||||||+|+||+.+|+++++|||+|++|||+.+....
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~~   81 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE   81 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCcccccccc
Confidence            68999999999999999999999999999887777899999999999999999999999999999999999998765433


Q ss_pred             HhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         137 AKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       137 ~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                       ..++...++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|+++||++|||+
T Consensus        82 -~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~  160 (197)
T d1j4aa1          82 -KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE  160 (197)
T ss_dssp             -HTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred             -cceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence             3456667899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCC-----------CccchhhcCCCcEEEccCCCC
Q psy6348         217 EEPPK-----------SEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       217 ~EP~~-----------~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      +||..           .+..+||+.+|||++|||+|+
T Consensus       161 ~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             TCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             cCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99843           122368999999999999985

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.9e-50  Score=357.13  Aligned_cols=186  Identities=31%  Similarity=0.456  Sum_probs=161.2

Q ss_pred             CchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH
Q psy6348          55 NFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE  134 (333)
Q Consensus        55 n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~  134 (333)
                      |++|||||+++++|++.|++++++..+++|.|.+....+.++.|++|||||+|+||+.+|+++++|||+|++||++....
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP   80 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence            78999999999999999999999999999999987777899999999999999999999999999999999999976432


Q ss_pred             HHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         135 DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       135 ~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      .  .......+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||++||
T Consensus        81 ~--~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV  158 (188)
T d1sc6a1          81 L--GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV  158 (188)
T ss_dssp             C--TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred             h--hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence            2  12233458999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC--CccchhhcCCCcEEEccCCCC
Q psy6348         215 FCEEPPK--SEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       215 ~~~EP~~--~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      |++||..  ++..+||+++|||++|||+||
T Consensus       159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            9999963  234579999999999999997

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=4.7e-50  Score=354.61  Aligned_cols=184  Identities=29%  Similarity=0.453  Sum_probs=168.5

Q ss_pred             hHHHHHHHHHHHHHhcCCCccchhhhcCcccccC--CCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CH
Q psy6348          57 ISACELTCSLISALSRNVPQGCQSLKEGKWDRKL--YTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SV  133 (333)
Q Consensus        57 ~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~  133 (333)
                      .|||||+++++|+++|++++++..+++|+|++..  ..+.++.|+++||||+|+||+.+|+++++|||+|++||++. ..
T Consensus         1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~   80 (188)
T d2naca1           1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE   80 (188)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence            4899999999999999999999999999997532  34789999999999999999999999999999999999976 44


Q ss_pred             HHHHhcCcc-ccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEe
Q psy6348         134 EDAAKLNIA-SLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAAL  212 (333)
Q Consensus       134 ~~a~~~gv~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaal  212 (333)
                      ......++. ..++++++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||++||+++|++|++.||+|
T Consensus        81 ~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~l  160 (188)
T d2naca1          81 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG  160 (188)
T ss_dssp             HHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEE
T ss_pred             cccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEE
Confidence            444555554 4589999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCccchhhcCCCcEEEccCCCC
Q psy6348         213 DVFCEEPPKSEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       213 DV~~~EP~~~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      |||++||.+..  +||+.+||+++|||+||
T Consensus       161 DV~~~EP~~~~--~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         161 DVWFPQPAPKD--HPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             SCCSSSSCCTT--CGGGTSTTBCCCCSCTT
T ss_pred             eCCCCCCCCCC--ChHHcCCCeEEccccCc
Confidence            99999997643  69999999999999997

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=5.9e-49  Score=345.76  Aligned_cols=181  Identities=25%  Similarity=0.301  Sum_probs=164.2

Q ss_pred             chHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH
Q psy6348          56 FISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED  135 (333)
Q Consensus        56 ~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~  135 (333)
                      +++||||+++++|+++|+++++++.+++|+|.+... ..++.||||||||+|+||+.+|+++++|||+|++|||+.....
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~-~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~   79 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGP   79 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSC-CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSS
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCC-CCcccCceEEEeccccccccceeeeeccccccccccccccccc
Confidence            478999999999999999999999999999987543 3579999999999999999999999999999999999864321


Q ss_pred             HHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccC
Q psy6348         136 AAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVF  215 (333)
Q Consensus       136 a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~  215 (333)
                          .....+++|++++||+|++|+|+|++|+++|+++.|+.||+|++|||+|||++||+++|+++|++|++.||++|||
T Consensus        80 ----~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~  155 (181)
T d1qp8a1          80 ----WRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW  155 (181)
T ss_dssp             ----SCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred             ----eeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence                1123489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccchhhcCCCcEEEccCCCC
Q psy6348         216 CEEPPKSEQTFELIKHPKVIVTPHLGA  242 (333)
Q Consensus       216 ~~EP~~~~~~~~L~~~pnvi~TPHi~~  242 (333)
                      ++||+.. ..+||+.+|||++|||+||
T Consensus       156 ~~e~p~~-~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         156 WGRNDFA-KDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             TTTTCCG-GGHHHHTSTTEEECCSCSS
T ss_pred             CCCCCCC-CCChHHcCCCEEeccccCc
Confidence            9887542 3479999999999999997

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.88  E-value=1.6e-23  Score=173.30  Aligned_cols=87  Identities=38%  Similarity=0.463  Sum_probs=84.2

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      |+|++++++.+++++++++++| ||+|++.|+|+||||+++|+++||.|+|+||+|+.+||||+++|||+++|++..+++
T Consensus        42 ~~d~ii~~~~~~i~~~~l~~~p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~  121 (130)
T d1ygya2          42 EADALLVRSATTVDAEVLAAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGE  121 (130)
T ss_dssp             GCSEEEECSSSCBCHHHHHTCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCcccchHHHHhhcccceEEeeecccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhh
Confidence            5899999999999999999999 999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCccc
Q psy6348          80 SLKEGKWD   87 (333)
Q Consensus        80 ~~~~g~w~   87 (333)
                      .+|+|+|-
T Consensus       122 ~vr~g~~~  129 (130)
T d1ygya2         122 FVPDAVNV  129 (130)
T ss_dssp             CCTTBCSC
T ss_pred             hcccCccC
Confidence            99999883

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.79  E-value=2.6e-20  Score=153.76  Aligned_cols=82  Identities=22%  Similarity=0.308  Sum_probs=76.7

Q ss_pred             CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCcc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQG   77 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~   77 (333)
                      ++|+|+++..+++++++|+++|   ||+|++.|+|+||||+++|+++||.|+|+|++++.+|||+++++||++.|++..+
T Consensus        44 ~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          44 GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHH
Confidence            5899999999999999999743   9999999999999999999999999999999999999999999999999999888


Q ss_pred             chhhh
Q psy6348          78 CQSLK   82 (333)
Q Consensus        78 ~~~~~   82 (333)
                      +++++
T Consensus       124 ~~~~e  128 (131)
T d1dxya2         124 ETSTE  128 (131)
T ss_dssp             CCTTE
T ss_pred             Hhhcc
Confidence            77654

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.78  E-value=9.3e-20  Score=157.42  Aligned_cols=87  Identities=18%  Similarity=0.185  Sum_probs=82.8

Q ss_pred             CceEEEEeC--CCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHH--------HHHHHH
Q psy6348           1 KYDGLVVRS--DTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELT--------CSLISA   69 (333)
Q Consensus         1 ~~daliv~s--~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~--------l~l~l~   69 (333)
                      |+|++|+++  .+++|+|+|+++| ||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||+        +.++++
T Consensus        89 DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~  168 (186)
T d2naca2          89 DADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFF  168 (186)
T ss_dssp             TCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccHHHHHhCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHH
Confidence            689999985  5789999999999 99999999999999999999999999999999999999999        889999


Q ss_pred             HhcCCCccchhhhcCccc
Q psy6348          70 LSRNVPQGCQSLKEGKWD   87 (333)
Q Consensus        70 ~~R~i~~~~~~~~~g~w~   87 (333)
                      ..|++...+..+++|+|.
T Consensus       169 ~~r~~~~~~~~v~~G~~A  186 (186)
T d2naca2         169 EGRPIRDEYLIVQGGALA  186 (186)
T ss_dssp             HTCCCCGGGEEEETTEEC
T ss_pred             hccchhhhhhhhhccccC
Confidence            999999999999999983

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.78  E-value=7.3e-22  Score=161.34  Aligned_cols=89  Identities=21%  Similarity=0.272  Sum_probs=81.0

Q ss_pred             ceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchh
Q psy6348           2 YDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS   80 (333)
Q Consensus         2 ~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~   80 (333)
                      +|++++   +++++++|+++| ||+|++.|+|+||+|++.+ ++||.|+|+||+|+.++|||+++++|++.|        
T Consensus        32 ~d~~l~---~~~~~~~l~~~~~Lk~i~~~~aG~D~i~~~~~-~~~i~v~n~~g~~~~~vae~~~~~il~~~r--------   99 (121)
T d1qp8a2          32 VEAALV---SRITAEELAKMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNGYGNERVWRQMVMEAVR--------   99 (121)
T ss_dssp             BCCCCB---SCCCHHHHHHCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSSSSCHHHHHHHHHHHHH--------
T ss_pred             cceeee---eccCHHHHhcCCCceEEEecccCcCCCCHHHh-ccCeEEEECCCCChHHHHHHHHHHHHHhcC--------
Confidence            455554   479999999999 9999999999999999988 579999999999999999999999999987        


Q ss_pred             hhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCC
Q psy6348          81 LKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFG  121 (333)
Q Consensus        81 ~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G  121 (333)
                                         +++|+|+|+||+++|+|+++||
T Consensus       100 -------------------~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2         100 -------------------NLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             -------------------HHHHHHTTSCCSCBCCGGGTC-
T ss_pred             -------------------CEEEEcCCHHHHHHHHHHHhcC
Confidence                               4689999999999999999997

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.77  E-value=7.9e-20  Score=151.39  Aligned_cols=78  Identities=23%  Similarity=0.373  Sum_probs=73.2

Q ss_pred             ceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccchh
Q psy6348           2 YDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQS   80 (333)
Q Consensus         2 ~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~~   80 (333)
                      +|++++++.+++|+++|+++| ||+|++.|+|+||||+++|+++||.|+|+||+++ ++|||+++|+|+++|+++++.+.
T Consensus        44 a~~vlv~~~~~i~~~~l~~~~~Lk~I~~~g~G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~~g  122 (133)
T d1mx3a2          44 AVGALMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAITG  122 (133)
T ss_dssp             EEEEEECSSSCBCHHHHTTCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEEeCCCcCHHHHhhCCCCeEEEEcCCCcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHHhc
Confidence            578899999999999999999 9999999999999999999999999999999988 47999999999999999887553

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=2.3e-19  Score=148.44  Aligned_cols=78  Identities=26%  Similarity=0.341  Sum_probs=68.8

Q ss_pred             CceEEEEeCCCCCCHHHhcccC-cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCccch
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN-LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQGCQ   79 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~-Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~~~~   79 (333)
                      ++|++++++.+++++++|+++| ||+|+++|+|+||||+++|+++||.|+|+|++|+.+|||+++.||+  .|++..++.
T Consensus        47 ~~d~ii~~~~~~i~~~~i~~~p~Lk~I~~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~  124 (132)
T d1sc6a2          47 DAHFIGLRSRTHLTEDVINAAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDN  124 (132)
T ss_dssp             SCSEEEECSSCCBCHHHHHHCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             CCcEEEEecccccChhhhhccccceeEEEecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhC
Confidence            6899999999999999999999 9999999999999999999999999999999999999998766654  444444444


Q ss_pred             h
Q psy6348          80 S   80 (333)
Q Consensus        80 ~   80 (333)
                      .
T Consensus       125 ~  125 (132)
T d1sc6a2         125 G  125 (132)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.71  E-value=7e-18  Score=138.79  Aligned_cols=76  Identities=28%  Similarity=0.405  Sum_probs=66.7

Q ss_pred             CceEEEEeCCCCCCHHHhcccC--cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHH---HHHHHhcCCC
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN--LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCS---LISALSRNVP   75 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~--Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~---l~l~~~R~i~   75 (333)
                      ++|+++++..+++++++|+++|  ||+|++.|+|+||||+++|+++||+|+|+||+|+.+|||++++   +++++.|...
T Consensus        44 ~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~l~~~~~  123 (129)
T d1gdha2          44 SVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGGAD  123 (129)
T ss_dssp             TCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             CCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHHHhCCCc
Confidence            5899999999999999999974  9999999999999999999999999999999999999996554   5555555443


Q ss_pred             c
Q psy6348          76 Q   76 (333)
Q Consensus        76 ~   76 (333)
                      .
T Consensus       124 ~  124 (129)
T d1gdha2         124 M  124 (129)
T ss_dssp             C
T ss_pred             h
Confidence            3

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.68  E-value=4.9e-18  Score=140.64  Aligned_cols=73  Identities=27%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             CceEEEEeCCCCCCHHHhcccC---cceEEEcccCcCccChhhHhhCCcEEEECCCCCchHHHHHHHHHHHHHhcCCCc
Q psy6348           1 KYDGLVVRSDTKVTAEVLQASN---LQVVGRAGTGVDNIDLTAATRKGVLVLNAPGGNFISACELTCSLISALSRNVPQ   76 (333)
Q Consensus         1 ~~daliv~s~~~v~~~~l~~~~---Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~p~~n~~avAE~~l~l~l~~~R~i~~   76 (333)
                      ++|+++++..+++++++|++++   ||+|++.|+|+||||+++|+++||.|+|+|++   ++|||++++||+++|++..
T Consensus        45 ~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~  120 (134)
T d1j4aa2          45 GADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL  120 (134)
T ss_dssp             TCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH
Confidence            5899999999999999999643   99999999999999999999999999999986   5799999999999997633

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.6e-17  Score=140.06  Aligned_cols=109  Identities=19%  Similarity=0.194  Sum_probs=94.3

Q ss_pred             CccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      ++..|.||+++|+|||.||+.+|+++++||++|++||+++-. -.+...|++..+++++++.+|+++.++    .++++|
T Consensus        18 t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaT----Gn~~vI   93 (163)
T d1li4a1          18 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTT----GCIDII   93 (163)
T ss_dssp             HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECS----SCSCSB
T ss_pred             hCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecC----CCccch
Confidence            457899999999999999999999999999999999998733 344556888889999999999998875    568899


Q ss_pred             cHHHHhccCCCcEEEEcc-CCcccchHhHHhhhhc
Q psy6348         171 NAEVLKKCKKGVRVVNVA-RGGIVDENALLDSLKC  204 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~a-Rg~~vd~~aL~~aL~~  204 (333)
                      +.+.|+.||+|++|.|++ +..-+|.++|.+...+
T Consensus        94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~  128 (163)
T d1li4a1          94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVE  128 (163)
T ss_dssp             CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSE
T ss_pred             hHHHHHhccCCeEEEEeccccceecHHHHhhccce
Confidence            999999999999999996 6777899988775433

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.54  E-value=5e-14  Score=118.91  Aligned_cols=141  Identities=18%  Similarity=0.202  Sum_probs=100.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcc--ccChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIA--SLGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~--~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      ++|||||+|+||+.+|+.|++.|++|++||++. ..+.+++.|+.  ..+..+.+++||+|++++|. ..+..++ ++..
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl-~~l~   78 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL-EKLI   78 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH-HHHG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh-hhhh
Confidence            479999999999999999999999999999975 34556676653  23556788999999999994 4677777 5667


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCC
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGAS  243 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~  243 (333)
                      ..+++++++++++...........+ +...-+....+...+...+.. ....|+....+++||+-++.
T Consensus        79 ~~l~~~~iv~~~~s~~~~~~~~~~~-~~~~~~~~h~~~~~~~~g~~~-a~~~l~~~~~~il~~~~~~~  144 (165)
T d2f1ka2          79 PHLSPTAIVTDVASVKTAIAEPASQ-LWSGFIGGHPMAGTAAQGIDG-AEENLFVNAPYVLTPTEYTD  144 (165)
T ss_dssp             GGSCTTCEEEECCSCCHHHHHHHHH-HSTTCEEEEECCCCSCSSGGG-CCTTTTTTCEEEEEECTTCC
T ss_pred             hhcccccceeeccccchHHHHHHHH-hhcccccceeeecccccchhh-hcccccCCCeEEEEeCCCCC
Confidence            8899999999998776554444444 333444433433322221111 11357788889999987754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.54  E-value=8e-15  Score=123.94  Aligned_cols=114  Identities=18%  Similarity=0.271  Sum_probs=97.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLIN--AEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  174 (333)
                      ++|||||+|.||+.+|++|...|++|++||+..+ .+...+.+.... +.+|++++||+|++|+|..++.+.++.  ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            4799999999999999999999999999999763 344555666554 799999999999999999888888763  457


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +..+++|.++|+++....-....+.+.+++..+.  .+|.
T Consensus        81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~--~vda  118 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVE--MLDA  118 (161)
T ss_dssp             HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCE--EEEC
T ss_pred             hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--eecc
Confidence            8889999999999999999999999999988775  4554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.45  E-value=1.4e-13  Score=116.35  Aligned_cols=114  Identities=19%  Similarity=0.221  Sum_probs=97.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhcc--HHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLIN--AEV  174 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~--~~~  174 (333)
                      ++|||||+|.||+++|++|...|++|.+||+... .+.....+... .++.|++..+|+|++++|..+..+.++.  ...
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            5899999999999999999999999999999763 34445556554 4799999999999999998888777763  446


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +..+++|.++||++...+-....+.+.+++..+.  .+|.
T Consensus        82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~--~~da  119 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLDA  119 (162)
T ss_dssp             HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEC
T ss_pred             cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc--EEec
Confidence            7889999999999999999999999999998774  5665

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.45  E-value=1.1e-13  Score=116.95  Aligned_cols=103  Identities=22%  Similarity=0.271  Sum_probs=87.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      ...+.||++.|+|||.+|+.+|++++++|++|++++..+ ..-.+...|++..+++|+++.+|+++.++.    .+++|+
T Consensus        18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG----n~~vI~   93 (163)
T d1v8ba1          18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG----NVDVIK   93 (163)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred             CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC----CCcccc
Confidence            456899999999999999999999999999999998866 233455568998999999999999999886    366899


Q ss_pred             HHHHhccCCCcEEEEccCCcc-cchHhHH
Q psy6348         172 AEVLKKCKKGVRVVNVARGGI-VDENALL  199 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~-vd~~aL~  199 (333)
                      .+.|..||+|+++.|++.... +|.++|.
T Consensus        94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~  122 (163)
T d1v8ba1          94 LEHLLKMKNNAVVGNIGHFDDEIQVNELF  122 (163)
T ss_dssp             HHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred             HHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence            999999999999999987654 4555554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.44  E-value=1e-12  Score=111.01  Aligned_cols=146  Identities=18%  Similarity=0.212  Sum_probs=106.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCC-CHHHHHhcCccc---cChhh-hccCCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMV-SVEDAAKLNIAS---LGLED-IWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~-~~~~a~~~gv~~---~~l~e-ll~~aDvV~l~~P~t~~t~~li~  171 (333)
                      |+|+|||+|.||.++|+.|+..|+  +|++||+.. ..+.+++.+...   .+.++ ....+|+|++|+|. ..+..++ 
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl-   79 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA-   79 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence            589999999999999999998885  899999976 445666776521   23333 34589999999993 4455555 


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCCCcHHHH
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGASTKEAQ  248 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~~t~ea~  248 (333)
                      .+....++++.++++++.....-.+++.+.+...-+.+.-+...+...+.. ....||+..++++|||-.. ..++.
T Consensus        80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~~-a~~~Lf~g~~~il~p~~~~-~~~~~  154 (171)
T d2g5ca2          80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVEY-SLDNLYEGKKVILTPTKKT-DKKRL  154 (171)
T ss_dssp             HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGGG-CCSSTTTTCEEEECCCSSS-CHHHH
T ss_pred             hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHHH-HHHHhhCCCeEEEecCCCC-CHHHH
Confidence            456677999999999999777777777777777666666666554332211 1135889999999999774 44443

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.30  E-value=4.1e-12  Score=108.43  Aligned_cols=113  Identities=18%  Similarity=0.168  Sum_probs=93.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCc--------cc-cChhhhccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNI--------AS-LGLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv--------~~-~~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      ++|||||+|+||..||++|...|++|++||++.+. +...+.+.        .. .++.+.+..+|.+++++|..+.+..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~   82 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHH
Confidence            57999999999999999999999999999998743 33333322        11 2566788999999999998888777


Q ss_pred             hccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         169 LINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ++ ...+..+++|.++||++...+-+...+.+.+.+..+.  .+|.
T Consensus        83 v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~--~lda  125 (176)
T d2pgda2          83 FI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGIL--FVGS  125 (176)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE--EEEE
T ss_pred             HH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCc--eecc
Confidence            65 5678889999999999999999999999999988775  5565

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=1.7e-11  Score=102.47  Aligned_cols=110  Identities=15%  Similarity=0.151  Sum_probs=86.6

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-H-HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhc
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-V-EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKK  177 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~-~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~  177 (333)
                      ||||||+|+||..||++|...|..++ |++..+ . +..++.+. ..+..+.+.++|++++++|..++..... ...+..
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~   78 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGS-EAVPLERVAEARVIFTCLPTTREVYEVA-EALYPY   78 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEE-ECSSTHHHHHHHHHHCC-EECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCCHHHHHHHHHHcCC-cccccccccceeEEEecccchhhhhhhh-cccccc
Confidence            69999999999999999999888765 555442 2 22233333 3344566678999999999877766554 567889


Q ss_pred             cCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         178 CKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       178 mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ++++.++|++++..+-....+.+.+++..+.  .+|.
T Consensus        79 ~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~--~lda  113 (156)
T d2cvza2          79 LREGTYWVDATSGEPEASRRLAERLREKGVT--YLDA  113 (156)
T ss_dssp             CCTTEEEEECSCCCHHHHHHHHHHHHTTTEE--EEEC
T ss_pred             ccccccccccccCCHHHHHHHHHHHHHcCCe--EEec
Confidence            9999999999999999999999999988775  5666

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.15  E-value=3.7e-11  Score=99.85  Aligned_cols=104  Identities=10%  Similarity=-0.013  Sum_probs=79.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      .||||||+|+||+.+|++|...|++|++||+..+. ......+... .+.+|++++||+|++|+|.... ...+ .+...
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~-~~~~-~~~~~   78 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVA-LGAA-RRAGR   78 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGH-HHHH-HHHHT
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchH-HHHH-Hhhcc
Confidence            47999999999999999999999999999987644 2333333333 3789999999999999996543 3332 22222


Q ss_pred             ccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         177 KCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       177 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                        ..+.++|+++.........+.+.+++..
T Consensus        79 --~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          79 --HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             --TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             --cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence              2367999999999888899998887654

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.02  E-value=4.7e-10  Score=93.38  Aligned_cols=99  Identities=14%  Similarity=0.188  Sum_probs=78.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      ++|||||+|+||+++++.|...|.++++|++....  +..++.|+... +.++++++||+|+++++. ...     ++.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp-~~~-----~~vl   74 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKP-QLF-----ETVL   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCG-GGH-----HHHH
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecch-HhH-----HHHh
Confidence            47999999999999999999999999999987532  22356687765 799999999999999972 222     4556


Q ss_pred             hccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         176 KKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       176 ~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      +.++++.++|+++-|  +..+.|.+.+..+
T Consensus        75 ~~l~~~~~iis~~ag--i~~~~l~~~l~~~  102 (152)
T d2ahra2          75 KPLHFKQPIISMAAG--ISLQRLATFVGQD  102 (152)
T ss_dssp             TTSCCCSCEEECCTT--CCHHHHHHHHCTT
T ss_pred             hhcccceeEeccccc--ccHHHHHhhhccc
Confidence            778999999999877  4566677777543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.99  E-value=9.4e-10  Score=90.86  Aligned_cols=96  Identities=16%  Similarity=0.121  Sum_probs=75.3

Q ss_pred             cCCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHH
Q psy6348          96 LYGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEV  174 (333)
Q Consensus        96 l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  174 (333)
                      ..-++|+||| +|.||+.+|++|+..|++|.+||+....           ..++.+..+|++++++|.. .+.. +-.+.
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~-~~~~-v~~~~   73 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------VAESILANADVVIVSVPIN-LTLE-TIERL   73 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------GHHHHHTTCSEEEECSCGG-GHHH-HHHHH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------ccchhhhhccccccccchh-hhee-eeecc
Confidence            4567999999 9999999999999999999999986532           2345678999999999953 3333 33677


Q ss_pred             HhccCCCcEEEEccCCcccchHhHHhhhhc
Q psy6348         175 LKKCKKGVRVVNVARGGIVDENALLDSLKC  204 (333)
Q Consensus       175 ~~~mk~gailIN~aRg~~vd~~aL~~aL~~  204 (333)
                      ...+++++++++++.-..--.+++.+.+..
T Consensus        74 ~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~  103 (152)
T d2pv7a2          74 KPYLTENMLLADLTSVKREPLAKMLEVHTG  103 (152)
T ss_dssp             GGGCCTTSEEEECCSCCHHHHHHHHHHCSS
T ss_pred             cccccCCceEEEecccCHHHHHHHHHHccC
Confidence            888999999999998765555666555543

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.97  E-value=1.2e-09  Score=92.63  Aligned_cols=113  Identities=21%  Similarity=0.245  Sum_probs=88.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCccc---------c---ChhhhccCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIAS---------L---GLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~---------~---~l~ell~~aDvV~l~~P~t~~  165 (333)
                      ++|||||+|+||..+|++|...|++|++||+..+. +...+.+...         .   ++-..+..++.+.++++....
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            47999999999999999999999999999997633 2233333210         1   233456789999999997777


Q ss_pred             hHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ....+ ......++++.++||+++...-+...+.+.|....+.  .+|.
T Consensus        82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~--~lda  127 (178)
T d1pgja2          82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLR--FLGM  127 (178)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCE--EEEE
T ss_pred             hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhccee--Eecc
Confidence            77766 4556779999999999999999999999999888775  4554

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.94  E-value=2.4e-09  Score=90.02  Aligned_cols=105  Identities=20%  Similarity=0.206  Sum_probs=75.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCc---------------c-ccChhhhccCCCEEEEec
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNI---------------A-SLGLEDIWPLADYITVHT  160 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv---------------~-~~~l~ell~~aDvV~l~~  160 (333)
                      .||++|||.|.||..+|..|...|++|.+||+.... +...+.+.               . ..++.|.+++||+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            489999999999999999999999999999996522 33333221               0 125789999999999999


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcC
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCG  205 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g  205 (333)
                      |. ..++.++ ++...+++++.+++- ..|.......+.+.+...
T Consensus        81 ~~-~~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~  122 (184)
T d1bg6a2          81 PA-IHHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILREN  122 (184)
T ss_dssp             CG-GGHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHT
T ss_pred             ch-hHHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHh
Confidence            94 4455554 556678999998874 444444455555555544

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.83  E-value=2.7e-09  Score=90.39  Aligned_cols=94  Identities=23%  Similarity=0.280  Sum_probs=78.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC--CHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV--SVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~--~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~  172 (333)
                      -|++|+|+|||||.-|++-|..|+..|++|++--+.-  +.+.+++.|++..+++|+.++||+|.+.+|+ +....+..+
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD-~~q~~vy~~   91 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPD-EFQGRLYKE   91 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCH-HHHHHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecch-HHHHHHHHH
Confidence            4789999999999999999999999999988755443  4477888899999999999999999999993 344556667


Q ss_pred             HHHhccCCCcEEEEccCC
Q psy6348         173 EVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg  190 (333)
                      +....||+|+.|. .+.|
T Consensus        92 ~I~p~lk~g~~L~-FaHG  108 (182)
T d1np3a2          92 EIEPNLKKGATLA-FAHG  108 (182)
T ss_dssp             HTGGGCCTTCEEE-ESCC
T ss_pred             hhhhhcCCCcEEE-Eecc
Confidence            8999999998876 4454

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.79  E-value=9.1e-09  Score=89.60  Aligned_cols=112  Identities=28%  Similarity=0.283  Sum_probs=86.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhcc-CCCEEEEecCCchhhHhhccH
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWP-LADYITVHTPLIPQTKNLINA  172 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~-~aDvV~l~~P~t~~t~~li~~  172 (333)
                      .|.|||++|-|||++|+.+|+.|..+|++|+++|... ........|.+.++.++++. +||+++-|.     +.+.|+.
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~   98 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT   98 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH
Confidence            5999999999999999999999999999999999865 33455667888888888886 699988763     4678999


Q ss_pred             HHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         173 EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       173 ~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +..+.++- .+++-.+.+.+.++ +.-+.|++..|. +.=|+
T Consensus        99 ~~a~~i~a-k~i~e~AN~p~~~~-~~~~~L~~rgI~-~iPD~  137 (201)
T d1c1da1          99 EVARTLDC-SVVAGAANNVIADE-AASDILHARGIL-YAPDF  137 (201)
T ss_dssp             HHHHHCCC-SEECCSCTTCBCSH-HHHHHHHHTTCE-ECCHH
T ss_pred             HHHhhhhh-heeeccCCCCcchh-hHHHHhcccceE-EEehh
Confidence            99998874 35566666665555 345666676664 34443

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.77  E-value=1.9e-09  Score=88.95  Aligned_cols=87  Identities=15%  Similarity=-0.036  Sum_probs=58.8

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHhcc
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKC  178 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~m  178 (333)
                      |||||+|+||+.+++.|+.-+..+.+|+|+.+.  +.++..+....+++++++++|+|++|+|.. ...     +.++.+
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i~-----~v~~~l   75 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YIK-----TVANHL   75 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-THH-----HHHTTT
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hhh-----HHHhhh
Confidence            799999999999999998744334689987632  233444555568999999999999999953 333     334445


Q ss_pred             -CCCcEEEEccCCccc
Q psy6348         179 -KKGVRVVNVARGGIV  193 (333)
Q Consensus       179 -k~gailIN~aRg~~v  193 (333)
                       +++.++|+++.+...
T Consensus        76 ~~~~~ivi~~s~~~~~   91 (153)
T d2i76a2          76 NLGDAVLVHCSGFLSS   91 (153)
T ss_dssp             CCSSCCEEECCSSSCG
T ss_pred             cccceeeeecccchhh
Confidence             478999999876543

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.75  E-value=1.1e-08  Score=84.54  Aligned_cols=103  Identities=17%  Similarity=0.099  Sum_probs=72.2

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC-CEEEEEcCCCCH-H-HHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG-MKVIGFDPMVSV-E-DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~d~~~~~-~-~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      .+|||||+|+||+++++.|...| .+|++|||..+. + ..++.|+...+-.+.+++||+|+++++ .....     +.+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk-P~~~~-----~v~   74 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK-PQDME-----AAC   74 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC-HHHHH-----HHH
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC-HHHHH-----HhH
Confidence            47999999999999999876656 899999997632 2 334567776654455788999999997 12222     233


Q ss_pred             hcc-CCCcEEEEccCCcccchHhHHhhhhc-CCceE
Q psy6348         176 KKC-KKGVRVVNVARGGIVDENALLDSLKC-GHCGG  209 (333)
Q Consensus       176 ~~m-k~gailIN~aRg~~vd~~aL~~aL~~-g~i~g  209 (333)
                      +.+ +.+.++|++.-|-  ..+.+.+.+.. .++..
T Consensus        75 ~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir  108 (152)
T d1yqga2          75 KNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVR  108 (152)
T ss_dssp             TTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEE
T ss_pred             HHHhhcccEEeecccCC--CHHHHHHHhCcCcceEe
Confidence            333 3578999988875  55667777743 34443

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=98.65  E-value=5.1e-08  Score=85.13  Aligned_cols=90  Identities=14%  Similarity=0.085  Sum_probs=71.8

Q ss_pred             ccCC-CEEEEEecChHHHHHHHHHhh------CCCEEEE-EcCC-CCHHHHHhcCcc-----ccChhhhccCCCEEEEec
Q psy6348          95 ELYG-KTLAVLGLGRIGREVALRMQA------FGMKVIG-FDPM-VSVEDAAKLNIA-----SLGLEDIWPLADYITVHT  160 (333)
Q Consensus        95 ~l~g-ktvGIIGlG~IG~~vA~~l~~------~G~~V~~-~d~~-~~~~~a~~~gv~-----~~~l~ell~~aDvV~l~~  160 (333)
                      -++| |||+|||||.-|++-|..|+.      .|.+|++ ..+. .+.+.+++.|++     ..+.+|+.++||+|.+.+
T Consensus        40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl  119 (226)
T d1qmga2          40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI  119 (226)
T ss_dssp             HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred             HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence            3678 899999999999999999998      5566644 4443 377889999986     447889999999999999


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEE
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVN  186 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN  186 (333)
                      |+..+ ..+. ++....||+|+.|.=
T Consensus       120 PDe~Q-~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         120 SDSAQ-ADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             CHHHH-HHHH-HHHHHHSCTTCEEEE
T ss_pred             chHHH-HHHH-HHHHHhcCCCceeee
Confidence            95333 3344 578899999998764

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2e-07  Score=80.05  Aligned_cols=115  Identities=17%  Similarity=0.128  Sum_probs=84.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHH-----------hcC------------------ccc-cChh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAA-----------KLN------------------IAS-LGLE  147 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~-----------~~g------------------v~~-~~l~  147 (333)
                      |+|+|||.|.||+.+|..+...|++|+.||+.... +.+.           +.+                  +.. .++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            69999999999999999999999999999997521 1110           111                  111 2567


Q ss_pred             hhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         148 DIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       148 ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                      +.+++||+|+=++|...+.+.-+-++.-+.++++++|...+.+-  ....|...+.. .=+..++..|.
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~-p~r~ig~Hffn  150 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTR-QDRFAGLHFFN  150 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSC-GGGEEEEEECS
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCccc--ccchhhhhccC-HhHEEeecccc
Confidence            88999999999999888888877777777889999988766553  44556666653 33446676664

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.58  E-value=5e-08  Score=81.61  Aligned_cols=97  Identities=22%  Similarity=0.306  Sum_probs=70.9

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCH--HHHHhcCcccc---ChhhhccCCCEEEEecCCchhhHh
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSV--EDAAKLNIASL---GLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~--~~a~~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .+.++++.|||.|.||+.+++.|...|. ++.+++|....  +.+.++|....   ++.+.+.++|+|+.|++   ....
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~ats---s~~~   97 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATA---APHP   97 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCS---SSSC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecC---CCCc
Confidence            5889999999999999999999999998 69999997522  34556666544   56677889999999986   3355


Q ss_pred             hccHHHHhcc------CCCcEEEEccCCcccc
Q psy6348         169 LINAEVLKKC------KKGVRVVNVARGGIVD  194 (333)
Q Consensus       169 li~~~~~~~m------k~gailIN~aRg~~vd  194 (333)
                      +|+++.++..      ++..++|+.+...-||
T Consensus        98 ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd  129 (159)
T d1gpja2          98 VIHVDDVREALRKRDRRSPILIIDIANPRDVE  129 (159)
T ss_dssp             CBCHHHHHHHHHHCSSCCCEEEEECCSSCSBC
T ss_pred             cccHhhhHHHHHhcccCCCeEEEeecCCCCcC
Confidence            6776665422      2334777776554333

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.55  E-value=8.9e-08  Score=75.15  Aligned_cols=90  Identities=12%  Similarity=0.027  Sum_probs=69.1

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHH---hcCcccc---ChhhhccCCCEEEEecCCchhhH
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAA---KLNIASL---GLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~---~~gv~~~---~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .+++||++.|||.|.+|.+-|+.|..+|++|+++++..+.+...   +.+++..   --++.+..+++|+.+...     
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d-----   82 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD-----   82 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC-----
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC-----
Confidence            57999999999999999999999999999999999988665432   2233322   124567889999988653     


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                      ..++.+..+.+|+..++||++
T Consensus        83 ~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          83 DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHHHHHcCCEEEeC
Confidence            335667777788888999973

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=98.55  E-value=1.5e-07  Score=80.35  Aligned_cols=116  Identities=19%  Similarity=0.125  Sum_probs=84.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHh-----------cC-------------ccccChhhhccCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAK-----------LN-------------IASLGLEDIWPLA  153 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~-----------~g-------------v~~~~l~ell~~a  153 (333)
                      |+|+|||.|.||+.+|..+...|++|+.||+.... +.+.+           .+             +...+..+.+.+|
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            58999999999999999999999999999996521 11110           01             0112223457899


Q ss_pred             CEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         154 DYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       154 DvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      |+|+-++|.+.+.+.-+-++.-+.++++++|...+.+-  ....|.+.+.. .=+..++-.|.+
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~~-p~r~~g~Hf~nP  145 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKR-PENFVGMHFFNP  145 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSC-GGGEEEEECCSS
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhccC-chheEeeccccC
Confidence            99999999998888877788888899999998877664  44566676653 333456666553

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.55  E-value=6.9e-08  Score=81.38  Aligned_cols=94  Identities=22%  Similarity=0.238  Sum_probs=74.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcC---ccc-----cChhhhccCCCEEEEecC-Cch
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLN---IAS-----LGLEDIWPLADYITVHTP-LIP  164 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g---v~~-----~~l~ell~~aDvV~l~~P-~t~  164 (333)
                      .+...++.|||.|..|..-++.++++|.+|.++|.+.. .+..+...   ++.     ..+++.+++||+|+-++- ...
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~  108 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  108 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCc
Confidence            35678999999999999999999999999999998752 22222221   111     147888999999998753 234


Q ss_pred             hhHhhccHHHHhccCCCcEEEEcc
Q psy6348         165 QTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       165 ~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .+-.+|.++.++.||||+++||++
T Consensus       109 ~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         109 RAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             ccCeeecHHHHhhcCCCcEEEEee
Confidence            567899999999999999999995

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.52  E-value=2.2e-07  Score=79.27  Aligned_cols=92  Identities=20%  Similarity=0.247  Sum_probs=73.1

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------------------------------
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------------------------------  144 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------------------------------  144 (333)
                      +..-++.|||.|..|..-++.++++|.+|.+||.+. ..+..++++-.++                              
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            456799999999999999999999999999999887 4566666653322                              


Q ss_pred             ChhhhccCCCEEEEec--CCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         145 GLEDIWPLADYITVHT--PLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       145 ~l~ell~~aDvV~l~~--P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .+.+.+++||+|+.++  |. ...-.++.++.++.||||+++||++
T Consensus       107 ~l~~~l~~aDlVI~talipG-~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPG-KPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTT-SCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             HHHHHHHhhhhheeeeecCC-cccceeehHHHHHhcCCCcEEEEEe
Confidence            1334588999999664  42 2345688999999999999999995

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.40  E-value=7.1e-07  Score=76.79  Aligned_cols=144  Identities=16%  Similarity=0.126  Sum_probs=89.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHh--------------------cC-cc-ccChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK--------------------LN-IA-SLGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--------------------~g-v~-~~~l~ell~~aDvV  156 (333)
                      ++|+|||+|.+|..+|..+...|++|++||.....-....                    .+ .. ..++++.+++||++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            4799999999999999999999999999997432111000                    01 11 12678889999999


Q ss_pred             EEecCCch---------hhHhhcc--HHHHhccCCCcEEEEccCCcccchHhHHhhhh-c--CCceEEEecc---CCCCC
Q psy6348         157 TVHTPLIP---------QTKNLIN--AEVLKKCKKGVRVVNVARGGIVDENALLDSLK-C--GHCGGAALDV---FCEEP  219 (333)
Q Consensus       157 ~l~~P~t~---------~t~~li~--~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~-~--g~i~gaalDV---~~~EP  219 (333)
                      ++|+|...         .....+.  ...+...+++.++|..+...+-..+.+...+- +  +...  ..|+   |.+|=
T Consensus        81 ~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~--~~~~~~~~~PE~  158 (202)
T d1mv8a2          81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKA--GVDFGVGTNPEF  158 (202)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCB--TTTBEEEECCCC
T ss_pred             EEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccc--cccccchhhhhh
Confidence            99999421         1112221  23445677899999999987766666554432 1  1111  1121   45553


Q ss_pred             CCC-ccchhhcCCCcEEEccCCCCCcHHHH
Q psy6348         220 PKS-EQTFELIKHPKVIVTPHLGASTKEAQ  248 (333)
Q Consensus       220 ~~~-~~~~~L~~~pnvi~TPHi~~~t~ea~  248 (333)
                      ... .....+...|++++    |+.+.++.
T Consensus       159 ~~~G~a~~d~~~~~~iVi----G~~~~~~~  184 (202)
T d1mv8a2         159 LRESTAIKDYDFPPMTVI----GELDKQTG  184 (202)
T ss_dssp             CCTTSHHHHHHSCSCEEE----EESSHHHH
T ss_pred             hcccchhhhhcCCCeEEE----EeCCHHHH
Confidence            221 12346778888775    45555444

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=98.37  E-value=3.4e-07  Score=75.17  Aligned_cols=90  Identities=14%  Similarity=0.153  Sum_probs=65.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH-HHhcCcc--------ccChhhhccCCCEEEEecCCchhhHhh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED-AAKLNIA--------SLGLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~gv~--------~~~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      +||+|||.|.||+.+|..|...|++|..+++...... ....+..        ..+..+.+..+|+|+++++. .++...
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~   79 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDA   79 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHH
Confidence            5899999999999999999999999999998763221 1111111        12456777899999999984 455555


Q ss_pred             ccHHHHhccCCCcEEEEccCC
Q psy6348         170 INAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg  190 (333)
                      + +.....+++++.++.+.-|
T Consensus        80 ~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          80 V-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             H-HHHHTTSCTTSCEEEECSS
T ss_pred             H-HhhccccCcccEEeeccCc
Confidence            3 4455667888988888666

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.36  E-value=5.2e-07  Score=76.38  Aligned_cols=93  Identities=16%  Similarity=0.204  Sum_probs=67.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhc---------Cc-------c-ccChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKL---------NI-------A-SLGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~---------gv-------~-~~~l~ell~~aDvV~l~~P  161 (333)
                      ++|+|||.|.+|.++|..|...|.+|..|.+....+..+..         +.       . ..+++++++++|+|++++|
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            58999999999999999999999999999875444332221         11       1 1267899999999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCcccc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVD  194 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd  194 (333)
                       +...+.++ ++....+++. .+|.++.|....
T Consensus        81 -s~~~~~~~-~~l~~~l~~~-~ii~~tkg~~~~  110 (180)
T d1txga2          81 -TDGVLPVM-SRILPYLKDQ-YIVLISKGLIDF  110 (180)
T ss_dssp             -GGGHHHHH-HHHTTTCCSC-EEEECCCSEEEE
T ss_pred             -hhhhHHHH-Hhhccccccc-eecccccCcccc
Confidence             45556555 3455666665 566677776443

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=98.24  E-value=2.8e-07  Score=78.95  Aligned_cols=94  Identities=17%  Similarity=0.173  Sum_probs=66.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc--------Ccc------c-cChhhhccCCCEEEEe
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL--------NIA------S-LGLEDIWPLADYITVH  159 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~--------gv~------~-~~l~ell~~aDvV~l~  159 (333)
                      ++-++|+|||.|.+|.++|..|...|.+|..|++.... +...+.        ++.      . .+++++++++|+|+++
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiia   84 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFV   84 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEEC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEc
Confidence            34468999999999999999999999999999985421 111111        121      1 2688999999999999


Q ss_pred             cCCchhhHhhccHHH----HhccCCCcEEEEccCC
Q psy6348         160 TPLIPQTKNLINAEV----LKKCKKGVRVVNVARG  190 (333)
Q Consensus       160 ~P~t~~t~~li~~~~----~~~mk~gailIN~aRg  190 (333)
                      +| +...+.++.+-.    ....+++..+|+++.|
T Consensus        85 vP-s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          85 IP-TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             SC-HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             Cc-HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            99 445555543211    1124577889999887

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.21  E-value=4.4e-06  Score=70.97  Aligned_cols=134  Identities=13%  Similarity=0.164  Sum_probs=88.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc-------------------cc-cChhhhccCCCEEEE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI-------------------AS-LGLEDIWPLADYITV  158 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv-------------------~~-~~l~ell~~aDvV~l  158 (333)
                      ++|+|||+|.+|..+|..+ +.|++|++||.....-.....|.                   .. .+..+...++|++++
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v   79 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence            4799999999999999877 46999999997542211111111                   11 134455678999999


Q ss_pred             ecCCchhhHh-hcc-------HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCCCCCCCC-ccchhhc
Q psy6348         159 HTPLIPQTKN-LIN-------AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFCEEPPKS-EQTFELI  229 (333)
Q Consensus       159 ~~P~t~~t~~-li~-------~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~-~~~~~L~  229 (333)
                      ++|....... ...       .+.+...+++.++|--+.-.+-..+.+..-+.+-++.      |.+|-... ...+.+.
T Consensus        80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~  153 (196)
T d1dlja2          80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL  153 (196)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred             cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence            9995443221 111       1223345778889988888888888888888777663      56665331 2235677


Q ss_pred             CCCcEEEccC
Q psy6348         230 KHPKVIVTPH  239 (333)
Q Consensus       230 ~~pnvi~TPH  239 (333)
                      ..|++++--+
T Consensus       154 ~p~riv~G~~  163 (196)
T d1dlja2         154 YPSRIIVSCE  163 (196)
T ss_dssp             SCSCEEEECC
T ss_pred             CCCEEEEeCC
Confidence            8888876554

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=6.4e-07  Score=67.71  Aligned_cols=65  Identities=20%  Similarity=0.227  Sum_probs=47.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHh--cCcccc--C-hhhhccCCCEEEEe
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK--LNIASL--G-LEDIWPLADYITVH  159 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~--~gv~~~--~-l~ell~~aDvV~l~  159 (333)
                      +++||++.|+|+|..|.++|+.|...|++|++||.....+....  .+....  . -++.+.+.|+|++.
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S   71 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS   71 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC
Confidence            57899999999999999999999999999999998664322222  122211  2 24556778888875

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.14  E-value=3.1e-06  Score=74.61  Aligned_cols=114  Identities=17%  Similarity=0.167  Sum_probs=85.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCccccChhhhcc-CCCEEEEecCCchhhHhh
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASLGLEDIWP-LADYITVHTPLIPQTKNL  169 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~~l~ell~-~aDvV~l~~P~t~~t~~l  169 (333)
                      ..+|.|||+.|-|+|++|+.+|+.|...|++|++.|.....  ......|....+.++++. .||+++-|.     ..+.
T Consensus        34 ~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA-----~~~~  108 (230)
T d1leha1          34 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAV  108 (230)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccc-----cccc
Confidence            35699999999999999999999999999999999986522  233445777777777764 599999884     4778


Q ss_pred             ccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         170 INAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      |+.+....++- .+++-.+...+.+.++- +.|.+..|. ++=|+
T Consensus       109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI~-~iPD~  150 (230)
T d1leha1         109 LNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGIV-YAPDY  150 (230)
T ss_dssp             BSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTCE-ECCHH
T ss_pred             cChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCcE-EEeeh
Confidence            88888888874 46777777888776553 555555553 44444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=1.5e-06  Score=69.35  Aligned_cols=69  Identities=23%  Similarity=0.324  Sum_probs=51.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc--------Chhhh-ccCCCEEEEecCCchhhH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL--------GLEDI-WPLADYITVHTPLIPQTK  167 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~--------~l~el-l~~aDvV~l~~P~t~~t~  167 (333)
                      |++.|+|+|++|+.+|+.|...|++|+++|..... +.+.+.+....        .|+++ +.+||.+++++|....+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~   79 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS   79 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhH
Confidence            67899999999999999999999999999986522 23334443221        24444 789999999998655443

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=7.4e-06  Score=68.95  Aligned_cols=94  Identities=22%  Similarity=0.205  Sum_probs=66.0

Q ss_pred             CCccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhc-------Ccc------ccChhhhccCCCEE
Q psy6348          91 YTGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKL-------NIA------SLGLEDIWPLADYI  156 (333)
Q Consensus        91 ~~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-------gv~------~~~l~ell~~aDvV  156 (333)
                      ..|.++.||++.|||-++ +|+++|..|...|..|..++...........       +..      ...+++...++|+|
T Consensus        22 ~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIv  101 (171)
T d1edza1          22 PEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVV  101 (171)
T ss_dssp             CTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEE
T ss_pred             cccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEE
Confidence            457899999999999886 5999999999999999988754211100000       000      01266777899999


Q ss_pred             EEecCCchhhHhh-ccHHHHhccCCCcEEEEccCCc
Q psy6348         157 TVHTPLIPQTKNL-INAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       157 ~l~~P~t~~t~~l-i~~~~~~~mk~gailIN~aRg~  191 (333)
                      +.++|..    ++ +..+   ..|+|+++||++-..
T Consensus       102 IsavG~p----~~~i~~d---~ik~GavvIDvGi~~  130 (171)
T d1edza1         102 ITGVPSE----NYKFPTE---YIKEGAVCINFACTK  130 (171)
T ss_dssp             EECCCCT----TCCBCTT---TSCTTEEEEECSSSC
T ss_pred             EEccCCC----ccccChh---hcccCceEeeccccc
Confidence            9999842    22 4333   369999999998654

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=3.3e-05  Score=64.74  Aligned_cols=84  Identities=19%  Similarity=0.232  Sum_probs=67.0

Q ss_pred             CccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+.+++||++.|||-+. +|+.+|..|...|+.|..++.+.            .++.+.+++||+++.+++.    .+++
T Consensus        33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t------------~~l~~~~~~aDivi~a~G~----~~~i   96 (170)
T d1a4ia1          33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQ----PEMV   96 (170)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred             hCcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc------------ccHHHHHhhccchhhcccc----cccc
Confidence            46789999999999976 99999999999999999998743            2456678899999999874    4556


Q ss_pred             cHHHHhccCCCcEEEEccCCcccc
Q psy6348         171 NAEVLKKCKKGVRVVNVARGGIVD  194 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg~~vd  194 (333)
                      ..+   ..|+|+++||++-..+.|
T Consensus        97 ~~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          97 KGE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             CGG---GSCTTCEEEECCCBC---
T ss_pred             ccc---cccCCCeEeccCcccccc
Confidence            554   369999999997655444

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.80  E-value=2e-05  Score=65.86  Aligned_cols=80  Identities=19%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             CccccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhc
Q psy6348          92 TGTELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        92 ~g~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+.++.||++.|||-+. +|+.+|..|...|++|+.++.+.            .++.+.+++||+|+.++..    .+++
T Consensus        31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------------~~l~~~~~~ADivI~a~G~----p~~i   94 (166)
T d1b0aa1          31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGK----PGFI   94 (166)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCC----TTCB
T ss_pred             cCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------------chhHHHHhhhhHhhhhccC----cccc
Confidence            35689999999999987 99999999999999999988643            2466778899999999874    4667


Q ss_pred             cHHHHhccCCCcEEEEccCC
Q psy6348         171 NAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aRg  190 (333)
                      ..+   .+|+|+++||++-.
T Consensus        95 ~~~---~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          95 PGD---WIKEGAIVIDVGIN  111 (166)
T ss_dssp             CTT---TSCTTCEEEECCCE
T ss_pred             ccc---ccCCCcEEEecCce
Confidence            655   46999999999744

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.74  E-value=1.9e-05  Score=64.52  Aligned_cols=87  Identities=16%  Similarity=0.164  Sum_probs=57.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH--HHhcCcc--------c-cChhhhccCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED--AAKLNIA--------S-LGLEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~gv~--------~-~~l~ell~~aDvV~l~~P~t~~  165 (333)
                      .+|+|.|||.|.||+.+|+.|...|++|+++|+......  +...+..        . ..+++.+...|+++.++|....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            368999999999999999999999999999999763221  2222211        1 1456678888999888874322


Q ss_pred             hHhhccHHHHhccCCCcEEEEcc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~a  188 (333)
                        ..+   .....+.+..+++.+
T Consensus        81 --~~~---~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          81 --ATV---IKSAIRQKKHVVTTS   98 (182)
T ss_dssp             --HHH---HHHHHHHTCEEECSS
T ss_pred             --hHH---HHHHHhhccceeecc
Confidence              111   122234556666654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.72  E-value=5.4e-05  Score=60.04  Aligned_cols=85  Identities=21%  Similarity=0.260  Sum_probs=58.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHH-HhcCcccc--------Chhhh-ccCCCEEEEecCCchhhH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDA-AKLNIASL--------GLEDI-WPLADYITVHTPLIPQTK  167 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a-~~~gv~~~--------~l~el-l~~aDvV~l~~P~t~~t~  167 (333)
                      ++|.|+|+|++|+.+|+.|...|.+|++.|..+.. +.. .+.+....        .++++ ++++|.++..++..+  .
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~--~   78 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE--V   78 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH--H
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH--H
Confidence            47999999999999999999999999999986532 222 23454332        23333 688999999887533  3


Q ss_pred             hhccHHHHhccCCCcEEE
Q psy6348         168 NLINAEVLKKCKKGVRVV  185 (333)
Q Consensus       168 ~li~~~~~~~mk~gailI  185 (333)
                      +++-....+.+.+..+++
T Consensus        79 N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          79 NLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             HHHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHHcCCceEEE
Confidence            444444555566665544

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.71  E-value=1.9e-05  Score=65.33  Aligned_cols=89  Identities=26%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-C-------hhhhccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-G-------LEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~-------l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .|.++.|+|.|.+|...++.++.+|++|++.|++. ..+.++++|...+ +       .+......|+++.++.....  
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~--  104 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTD--  104 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTT--
T ss_pred             CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCcc--
Confidence            58899999999999999999999999999999877 4577788886321 1       12334456777766542211  


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                       ..-...++.++++..++.++
T Consensus       105 -~~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2         105 -IDFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             -CCTTTGGGGEEEEEEEEECC
T ss_pred             -chHHHHHHHhhccceEEEec
Confidence             11123455666666666653

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=97.67  E-value=5.9e-05  Score=67.16  Aligned_cols=115  Identities=26%  Similarity=0.316  Sum_probs=74.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEE--------cCCC-CHHH-------------------HHhcCcccc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGF--------DPMV-SVED-------------------AAKLNIASL  144 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~--------d~~~-~~~~-------------------a~~~gv~~~  144 (333)
                      +.+|.|||+.|=|+|++|+.+|+.|...|++|++.        |+.- +.+.                   +...+.+..
T Consensus        31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (255)
T d1bgva1          31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF  110 (255)
T ss_dssp             TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence            45689999999999999999999999999999864        4432 1111                   111233334


Q ss_pred             Chhhhc-cCCCEEEEecCCchhhHhhccHHHHhccCC-Cc-EEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         145 GLEDIW-PLADYITVHTPLIPQTKNLINAEVLKKCKK-GV-RVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       145 ~l~ell-~~aDvV~l~~P~t~~t~~li~~~~~~~mk~-ga-ilIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +.++++ .+||+++-|     .+.+.|+.+..+.++. ++ +++-.+.+.+.+ ++....|+++.|. ++=|+
T Consensus       111 ~~~~~~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~-ea~~~ll~~~gI~-vvPD~  176 (255)
T d1bgva1         111 PGEKPWGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTN-EALRFLMQQPNMV-VAPSK  176 (255)
T ss_dssp             ETCCGGGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCH-HHHHHHHHCTTCE-EECHH
T ss_pred             chhhcccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcch-HHHHHHHHhcCCE-EehHh
Confidence            445544 469998765     4577888888877763 44 555555555444 4444456665554 45554

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=7e-05  Score=61.44  Aligned_cols=64  Identities=19%  Similarity=0.247  Sum_probs=48.4

Q ss_pred             EEEEEecChHHHH-HHHHHhhC-CCEEE-EEcCCCCH--HHHHhcCcccc-ChhhhccCCCEEEEecCCc
Q psy6348         100 TLAVLGLGRIGRE-VALRMQAF-GMKVI-GFDPMVSV--EDAAKLNIASL-GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus       100 tvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~~--~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t  163 (333)
                      ++||||+|.+|+. ....++.. +++++ +||+....  +.+++.++... ++++++++.|+|++++|..
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~   72 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTA   72 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTT
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccch
Confidence            7999999999987 46666654 67766 46887632  34456677655 6889999999999999953

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.0001  Score=60.73  Aligned_cols=87  Identities=20%  Similarity=0.199  Sum_probs=63.6

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Chhhhc--------cCCCEEEEec
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GLEDIW--------PLADYITVHT  160 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l~ell--------~~aDvV~l~~  160 (333)
                      .|.+|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|...+      +..+..        ..+|+++-++
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~  105 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT  105 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred             CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence            47799999999999999999999999 899999876 4466788886432      222221        3578888888


Q ss_pred             CCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         161 PLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       161 P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +. +.+    -+..++.+++|..++.++
T Consensus       106 G~-~~~----~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2         106 GA-EAS----IQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             CC-HHH----HHHHHHHSCTTCEEEECS
T ss_pred             CC-chh----HHHHHHHhcCCCEEEEEe
Confidence            63 222    245667788888877764

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.58  E-value=0.00011  Score=59.95  Aligned_cols=92  Identities=18%  Similarity=0.212  Sum_probs=58.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcC---------c--cc-cChhhhccCCCEEEEecCCch
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLN---------I--AS-LGLEDIWPLADYITVHTPLIP  164 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g---------v--~~-~~l~ell~~aDvV~l~~P~t~  164 (333)
                      |||+|||.|.+|..+|-.+...|+  ++..||.......++.+.         .  .. ..-.+.+++||+|+++.....
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~   81 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK   81 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence            799999999999999988876664  899999865322222111         1  01 123356899999999865321


Q ss_pred             -------h--------hHhhcc--HHHHhccCCCcEEEEccCC
Q psy6348         165 -------Q--------TKNLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       165 -------~--------t~~li~--~~~~~~mk~gailIN~aRg  190 (333)
                             .        +..++.  .+.+....|++++|+++-.
T Consensus        82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence                   1        112221  1233445788999998654

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.56  E-value=0.00012  Score=60.73  Aligned_cols=71  Identities=21%  Similarity=0.194  Sum_probs=52.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH--HHhc----CccccChhhh-ccCCCEEEEecCCc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED--AAKL----NIASLGLEDI-WPLADYITVHTPLI  163 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~----gv~~~~l~el-l~~aDvV~l~~P~t  163 (333)
                      +.++.||++.|+|.|-.+++++..|...|.+|..++|+.+...  ++..    .+...++++. ..++|+|+.++|..
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G   90 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSG   90 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCG
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccC
Confidence            4578899999999999999999999999999999999763321  1211    1223344443 45689999999854

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.54  E-value=0.00011  Score=59.84  Aligned_cols=94  Identities=15%  Similarity=0.146  Sum_probs=59.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcC-----------ccc-cChhhhccCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLN-----------IAS-LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~g-----------v~~-~~l~ell~~aDvV~l~~P~  162 (333)
                      .++||+|||.|.+|+.+|..+...|+  ++..||.......++.+.           +.. ..-.+.+++||+|+++...
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~   84 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA   84 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence            57899999999999999988876665  899999865332221111           111 1345778999999997543


Q ss_pred             ch---hh--------Hhhcc--HHHHhccCCCcEEEEccCC
Q psy6348         163 IP---QT--------KNLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       163 t~---~t--------~~li~--~~~~~~mk~gailIN~aRg  190 (333)
                      ..   .+        ..++.  .+.+....|++++|+++..
T Consensus        85 ~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNP  125 (148)
T d1ldna1          85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNP  125 (148)
T ss_dssp             CCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSS
T ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCc
Confidence            22   11        11110  1223445678899998543

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.53  E-value=0.00015  Score=59.55  Aligned_cols=94  Identities=21%  Similarity=0.296  Sum_probs=61.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------Cccc-----cChhhhccCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------NIAS-----LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------gv~~-----~~l~ell~~aDvV~l~~P  161 (333)
                      +-+||+|||.|.+|+.+|..+...++ +++.||...........         +...     .+.++.++.||+|+++..
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            45799999999999999988876665 89999987644322211         1111     145678999999999874


Q ss_pred             C--chh------hHhh-c--c----H---HHHhccCCCcEEEEccCC
Q psy6348         162 L--IPQ------TKNL-I--N----A---EVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       162 ~--t~~------t~~l-i--~----~---~~~~~mk~gailIN~aRg  190 (333)
                      .  .+.      ++.- +  +    +   +.+....|++++++++..
T Consensus        86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            2  111      2211 1  1    1   223445688999998654

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.53  E-value=7.5e-05  Score=61.92  Aligned_cols=82  Identities=17%  Similarity=0.224  Sum_probs=55.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhC-CCEEEE-EcCCCCHHHHHhcCcc-ccChhhhccCCCEEEEecCCchhhHhhccHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF-GMKVIG-FDPMVSVEDAAKLNIA-SLGLEDIWPLADYITVHTPLIPQTKNLINAEVL  175 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~~~a~~~gv~-~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~  175 (333)
                      .++||||+|.||+.+++.+++. ++++++ +|+....  ....++. ..+.+++..+.|+|++++|.....     +-..
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~--~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~-----~~a~   76 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTKTPVFDVADVDKHADDVDVLFLCMGSATDI-----PEQA   76 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSSSCEEEGGGGGGTTTTCSEEEECSCTTTHH-----HHHH
T ss_pred             ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc--ccccccccchhhhhhccccceEEEeCCCcccH-----HHHH
Confidence            4799999999999999999875 677765 5654322  2222332 236788889999999999954322     2233


Q ss_pred             hccCCCcEEEEc
Q psy6348         176 KKCKKGVRVVNV  187 (333)
Q Consensus       176 ~~mk~gailIN~  187 (333)
                      +.++.|.-+|.+
T Consensus        77 ~aL~aG~~vv~~   88 (170)
T d1f06a1          77 PKFAQFACTVDT   88 (170)
T ss_dssp             HHHTTTSEEECC
T ss_pred             HHHHCCCcEEEe
Confidence            446677666644

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.50  E-value=0.00016  Score=63.72  Aligned_cols=112  Identities=26%  Similarity=0.273  Sum_probs=76.9

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC---------CHHHHH----------------hcCcccc-Chh
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV---------SVEDAA----------------KLNIASL-GLE  147 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~---------~~~~a~----------------~~gv~~~-~l~  147 (333)
                      .+|.|||+.|=|+|++|+.+|+.|...|++|++.+...         ..+...                ..+.+.. +.+
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNPD  106 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSSTT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCcc
Confidence            46899999999999999999999999999999865321         111111                1122222 345


Q ss_pred             hhcc-CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         148 DIWP-LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       148 ell~-~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      +++. .||+++-|.     ..+.|+.+...+++- .+++-.+-+.+ ..++ .+.|.+..|. ++=|.
T Consensus       107 ~i~~~~~DIliPcA-----~~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~-~~PD~  165 (242)
T d1v9la1         107 AIFKLDVDIFVPAA-----IENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV-VVPDI  165 (242)
T ss_dssp             GGGGCCCSEEEECS-----CSSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE-EECHH
T ss_pred             hhccccccEEeecc-----hhccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE-EeCch
Confidence            5554 799999885     367788888887864 46666677765 5555 3777777765 55554

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=97.47  E-value=0.00022  Score=57.64  Aligned_cols=92  Identities=21%  Similarity=0.222  Sum_probs=55.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCH--HHHHhcC--cc------c-cChhhhccCCCEEEEecC--Cc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSV--EDAAKLN--IA------S-LGLEDIWPLADYITVHTP--LI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~--~~a~~~g--v~------~-~~l~ell~~aDvV~l~~P--~t  163 (333)
                      +||+|||.|.+|+.+|-.+...|.  ++..||.....  ..+.++.  ..      . ..-.+.+++||+|+++.-  ..
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   81 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK   81 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence            589999999999999988876665  89999976633  2232221  11      1 123566899999999843  22


Q ss_pred             h-hhHh-hc--cH-------HHHhccCCCcEEEEccCC
Q psy6348         164 P-QTKN-LI--NA-------EVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       164 ~-~t~~-li--~~-------~~~~~mk~gailIN~aRg  190 (333)
                      + +++- ++  +.       +.+....|++++|+++..
T Consensus        82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence            1 1111 11  11       123445678899998654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.44  E-value=0.00024  Score=58.17  Aligned_cols=87  Identities=18%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc--------Chhh---hc-----cCCCEEEEe
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL--------GLED---IW-----PLADYITVH  159 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~--------~l~e---ll-----~~aDvV~l~  159 (333)
                      .|.++.|+|.|.||...++.++.+|.+|+++|+.. ..+.++++|....        +.++   .+     ..+|+|+-+
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~  105 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC  105 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred             CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeec
Confidence            47799999999999999999999999999999976 3456677765321        1111   11     346777777


Q ss_pred             cCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         160 TPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       160 ~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +.. +.+    -...+..++++..++.++
T Consensus       106 ~g~-~~~----~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2         106 SGN-EKC----ITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             SCC-HHH----HHHHHHHSCTTCEEEECS
T ss_pred             CCC-hHH----HHHHHHHHhcCCceEEEe
Confidence            652 221    133456677777777664

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.43  E-value=0.0001  Score=59.71  Aligned_cols=40  Identities=20%  Similarity=0.348  Sum_probs=36.5

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS  132 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  132 (333)
                      ..+|.||++.|||.|.+|..-|+.|..+|++|.+++|..+
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~   47 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4679999999999999999999999999999999987553

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=0.00015  Score=63.57  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=80.0

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHh-hCCCEEEEEc--------CCC-CHHHHH----hc-------CccccChhhhcc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQ-AFGMKVIGFD--------PMV-SVEDAA----KL-------NIASLGLEDIWP  151 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d--------~~~-~~~~a~----~~-------gv~~~~l~ell~  151 (333)
                      +.++.|+|+.|=|+|++|+.+|+.|. ..|++|++.+        +.- ......    ..       +.+..+.++++.
T Consensus        26 ~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (234)
T d1b26a1          26 GIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELLE  105 (234)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHHT
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeeccccccc
Confidence            56789999999999999999999995 6899999764        222 222111    11       123345667766


Q ss_pred             -CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEeccCC
Q psy6348         152 -LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDVFC  216 (333)
Q Consensus       152 -~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV~~  216 (333)
                       .||+++-|     ...+.|+.+....++- .+++-.+-+.+- .++ .+.|.+..|. ++=|+.-
T Consensus       106 ~~~DI~~Pc-----A~~~~I~~~~a~~l~~-~~I~e~AN~p~t-~~a-~~~L~~rgI~-~~PD~~a  162 (234)
T d1b26a1         106 LDVDILVPA-----ALEGAIHAGNAERIKA-KAVVEGANGPTT-PEA-DEILSRRGIL-VVPDILA  162 (234)
T ss_dssp             SCCSEEEEC-----SCTTCBCHHHHTTCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE-EECHHHH
T ss_pred             cccceeecc-----hhcccccHHHHHHhhh-ceEeecCCCCCC-HHH-HHHHHHCCeE-EechHHh
Confidence             79999877     3468899999999986 467777777764 344 4667777665 6666543

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=0.00012  Score=56.88  Aligned_cols=38  Identities=32%  Similarity=0.564  Sum_probs=34.3

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS  132 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~  132 (333)
                      ...+.||||+|-|..|+.+|..++.+|++++++||...
T Consensus         8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            34567899999999999999999999999999999863

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.40  E-value=0.00029  Score=56.73  Aligned_cols=92  Identities=16%  Similarity=0.291  Sum_probs=59.9

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc-----------Cccc--cChhhhccCCCEEEEec--C
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL-----------NIAS--LGLEDIWPLADYITVHT--P  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~-----------gv~~--~~l~ell~~aDvV~l~~--P  161 (333)
                      .||+|||.|.+|+.+|..+...|.  ++..||.......+...           ....  .+..+.+++||+|+++.  |
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~   80 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence            489999999999999999987764  89999987654332211           1111  24567789999999995  3


Q ss_pred             Cchh-hHh--------hcc--HHHHhccCCCcEEEEccCC
Q psy6348         162 LIPQ-TKN--------LIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       162 ~t~~-t~~--------li~--~~~~~~mk~gailIN~aRg  190 (333)
                      ..+. ++.        ++.  .+.+....|++++++++..
T Consensus        81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1guza1          81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNP  120 (142)
T ss_dssp             CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCC
Confidence            3331 111        110  1223334588999998653

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=97.39  E-value=0.00016  Score=59.30  Aligned_cols=104  Identities=15%  Similarity=0.211  Sum_probs=63.9

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEEEEcCCCCH--HHHHhcCcc--ccChhhhcc-CCCEEEEecCCchhhHhhcc
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVIGFDPMVSV--EDAAKLNIA--SLGLEDIWP-LADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~~~d~~~~~--~~a~~~gv~--~~~l~ell~-~aDvV~l~~P~t~~t~~li~  171 (333)
                      .++||||+|.+|+. ....++.. +.++.++|+....  ..++..++.  +.+++++++ +.|+|++++|......  +-
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~--~~   79 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHST--LA   79 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHH--HH
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccc--cc
Confidence            37999999999976 56677655 5688889986522  233445653  347888875 6799999999543322  22


Q ss_pred             HHHHhccCCC-cEEEEc-cCCcccchHhHHhhhhcCCc
Q psy6348         172 AEVLKKCKKG-VRVVNV-ARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 ~~~~~~mk~g-ailIN~-aRg~~vd~~aL~~aL~~g~i  207 (333)
                      ...++   .| .+++-- ---.+-+.+.|.++.++.++
T Consensus        80 ~~al~---~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          80 AFFLH---LGIPTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             HHHHH---TTCCEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             ccccc---cccccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            33333   33 244432 12233445667777665544

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=97.38  E-value=0.00025  Score=57.63  Aligned_cols=92  Identities=13%  Similarity=0.146  Sum_probs=57.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHHHHhcCc----------c-cc-ChhhhccCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVEDAAKLNI----------A-SL-GLEDIWPLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~gv----------~-~~-~l~ell~~aDvV~l~~P~  162 (333)
                      ..+||+|||.|.+|..+|..|...|  -++..||........+.+.+          . .. +. +.+++||+|+++...
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEeccc
Confidence            4579999999999999999888766  58999998643222211111          1 11 34 456899999998642


Q ss_pred             ch---hh--------Hhhcc--HHHHhccCCCcEEEEccC
Q psy6348         163 IP---QT--------KNLIN--AEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 t~---~t--------~~li~--~~~~~~mk~gailIN~aR  189 (333)
                      ..   .+        ..++.  .+.+..-.+++++|+++-
T Consensus        83 ~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          83 PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            11   11        11111  122344567889988874

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.37  E-value=0.00028  Score=56.84  Aligned_cols=92  Identities=22%  Similarity=0.286  Sum_probs=57.6

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCCCHHHHHhcC------c----c-ccChhhhccCCCEEEEecC--Cc
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMVSVEDAAKLN------I----A-SLGLEDIWPLADYITVHTP--LI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~~~~~a~~~g------v----~-~~~l~ell~~aDvV~l~~P--~t  163 (333)
                      .||+|||.|.+|..+|..+...+  -++..||........+.+.      +    . .....+.+++||+|+++.-  ..
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            48999999999999998776544  5899999764332222211      1    1 1134566899999999863  22


Q ss_pred             h-hhH-hhc--c-------HHHHhccCCCcEEEEccCC
Q psy6348         164 P-QTK-NLI--N-------AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       164 ~-~t~-~li--~-------~~~~~~mk~gailIN~aRg  190 (333)
                      + .++ .++  +       .+.+....|++++++++-.
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNP  118 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCc
Confidence            2 111 111  1       1234456788999998643

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=97.35  E-value=0.00037  Score=56.91  Aligned_cols=93  Identities=20%  Similarity=0.233  Sum_probs=59.7

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhc---------Ccc--c--cChhhhccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKL---------NIA--S--LGLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~---------gv~--~--~~l~ell~~aDvV~l~~P~t  163 (333)
                      ..||+|||.|.+|+.+|..+...+. ++..||..........+         +..  .  .+..+.+++||+|+++.-..
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~   82 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT   82 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence            4699999999999999987776554 89999987644322211         111  1  13457789999999996532


Q ss_pred             hh---h-----H-hhc--cH----H---HHhccCCCcEEEEccCC
Q psy6348         164 PQ---T-----K-NLI--NA----E---VLKKCKKGVRVVNVARG  190 (333)
Q Consensus       164 ~~---t-----~-~li--~~----~---~~~~mk~gailIN~aRg  190 (333)
                      ..   +     + .++  +.    +   .+....|++++++++..
T Consensus        83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            11   1     1 111  11    1   23444689999998764

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.35  E-value=0.00011  Score=61.20  Aligned_cols=45  Identities=22%  Similarity=0.294  Sum_probs=38.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.+|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa   74 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA   74 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence            58899999999999999999999998 899999866 3355566664

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.32  E-value=0.00014  Score=58.14  Aligned_cols=87  Identities=16%  Similarity=0.197  Sum_probs=62.7

Q ss_pred             ccCCCEEEEEecC----------hHHHHHHHHHhhCCCEEEEEcCCCCHHHH--------H----hcCccc-cChhhhcc
Q psy6348          95 ELYGKTLAVLGLG----------RIGREVALRMQAFGMKVIGFDPMVSVEDA--------A----KLNIAS-LGLEDIWP  151 (333)
Q Consensus        95 ~l~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a--------~----~~gv~~-~~l~ell~  151 (333)
                      .+.+++|||+|+-          .-...+++.|...|++|.+|||..+....        .    ..+... .++++++.
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~   89 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA   89 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence            3678999999984          46678999999999999999996532211        1    011222 37899999


Q ss_pred             CCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEc
Q psy6348         152 LADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       152 ~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~  187 (333)
                      +||+|+++++- ++-     .+....++++.+++++
T Consensus        90 ~~D~ivi~t~h-~~f-----~~l~~~~~~~~~I~D~  119 (136)
T d1mv8a3          90 SSDVLVLGNGD-ELF-----VDLVNKTPSGKKLVDL  119 (136)
T ss_dssp             HCSEEEECSCC-GGG-----HHHHHSCCTTCEEEES
T ss_pred             hceEEEEEeCC-HHH-----HHHHHHhcCCCEEEEC
Confidence            99999999984 332     2345567788899997

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=0.00028  Score=58.94  Aligned_cols=70  Identities=21%  Similarity=0.332  Sum_probs=51.1

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCC-HHHHH----hcC----c--ccc------ChhhhccCCC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVS-VEDAA----KLN----I--ASL------GLEDIWPLAD  154 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~-~~~a~----~~g----v--~~~------~l~ell~~aD  154 (333)
                      +.++.||++.|+|.|..|++++..|...|. +++.++|+.+ .+.+.    +++    .  ...      ++.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            567899999999999999999999998888 7888998763 23221    111    1  111      2345567889


Q ss_pred             EEEEecCC
Q psy6348         155 YITVHTPL  162 (333)
Q Consensus       155 vV~l~~P~  162 (333)
                      +|+.++|.
T Consensus        93 iiIN~Tp~  100 (182)
T d1vi2a1          93 ILTNGTKV  100 (182)
T ss_dssp             EEEECSST
T ss_pred             eeccccCC
Confidence            99988884

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.30  E-value=0.0004  Score=57.08  Aligned_cols=88  Identities=17%  Similarity=0.359  Sum_probs=59.1

Q ss_pred             CEEEEEecChHHHH-HHHHHhhCC-CEEEEE-cCCCC-H--HHHHhcCcccc--Chhhhc-----cCCCEEEEecCCchh
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAFG-MKVIGF-DPMVS-V--EDAAKLNIASL--GLEDIW-----PLADYITVHTPLIPQ  165 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~G-~~V~~~-d~~~~-~--~~a~~~gv~~~--~l~ell-----~~aDvV~l~~P~t~~  165 (333)
                      -++||||.|.||+. +.+.++.+. .++.+. |++.. .  ..+++.|+...  ++++++     .+.|+|++++|... 
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~-   83 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA-   83 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH-
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh-
Confidence            38999999999986 567777654 466554 66542 2  45677787543  344443     46899999998332 


Q ss_pred             hHhhccHHHHhccCCCcEEEEccC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aR  189 (333)
                        +.-.+..++..+.|..+|+-+.
T Consensus        84 --h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          84 --HVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             --HHHHHHHHHHHCTTCEEEECST
T ss_pred             --HHHhHHHHHHHHcCCEEEEccc
Confidence              3322344556799999999865

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.29  E-value=0.00061  Score=59.78  Aligned_cols=111  Identities=23%  Similarity=0.272  Sum_probs=71.0

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHh-hCCCEEEEEc-CCC--------CHHHHH----hc-------CccccChhhhc-cC
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQ-AFGMKVIGFD-PMV--------SVEDAA----KL-------NIASLGLEDIW-PL  152 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~-~~G~~V~~~d-~~~--------~~~~a~----~~-------gv~~~~l~ell-~~  152 (333)
                      .|.|||+.|-|+|++|+.+|+.|. .+|++|++.. ..-        ..+...    +.       +.+..+.++++ .+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~  108 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE  108 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence            499999999999999999999885 6899998763 221        111111    11       22334555655 46


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ||+++-|.     +.+.|+.+....++- .+++-.+-+.+.. ++ .+.|.+..|. ++=|.
T Consensus       109 ~DIl~PcA-----~~~~I~~~~a~~i~a-k~I~e~AN~p~t~-ea-~~~L~~rgI~-~iPD~  161 (239)
T d1gtma1         109 VDVLAPAA-----IEEVITKKNADNIKA-KIVAEVANGPVTP-EA-DEILFEKGIL-QIPDF  161 (239)
T ss_dssp             CSEEEECS-----CSCCBCTTGGGGCCC-SEEECCSSSCBCH-HH-HHHHHHTTCE-EECHH
T ss_pred             ccEEeecc-----ccccccHHHHHhccc-cEEEecCCCCCCH-HH-HHHHHHCCCE-Eecch
Confidence            89888774     357777777777754 3666666666543 33 3556666554 44443

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=97.29  E-value=0.00069  Score=54.52  Aligned_cols=91  Identities=19%  Similarity=0.248  Sum_probs=55.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHHHHHhcCc-----------cc--cChhhhccCCCEEEEecCC--
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVEDAAKLNI-----------AS--LGLEDIWPLADYITVHTPL--  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~~a~~~gv-----------~~--~~l~ell~~aDvV~l~~P~--  162 (333)
                      +||+|||.|.+|..+|-.+...+. +++.+|.............           ..  .+--+.+++||+|+++...  
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~   81 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR   81 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC
Confidence            699999999999999988876554 8999998765433322111           11  1223557899999999842  


Q ss_pred             ch-hhH-hhc--c----HH---HHhccCCCcEEEEccC
Q psy6348         163 IP-QTK-NLI--N----AE---VLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 t~-~t~-~li--~----~~---~~~~mk~gailIN~aR  189 (333)
                      .+ .++ .++  +    ++   .+....|+++++.++.
T Consensus        82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             --------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence            22 111 111  1    11   2333456888888754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=0.00042  Score=56.78  Aligned_cols=86  Identities=20%  Similarity=0.234  Sum_probs=60.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcCcccc-------ChhhhccCCCEEEEecCCchhhHh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLNIASL-------GLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~gv~~~-------~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      .|.+|.|+|.|.+|...++.++.+|+++++.|+..+ .+.++++|...+       ...+..+..|+++-++..... . 
T Consensus        30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~-~-  107 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHN-L-  107 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCC-H-
T ss_pred             CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchh-H-
Confidence            488999999999999999999999999999988763 466777776422       122334567777777753221 1 


Q ss_pred             hccHHHHhccCCCcEEEEc
Q psy6348         169 LINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~  187 (333)
                         ...+..++++..++.+
T Consensus       108 ---~~~~~~l~~~G~iv~~  123 (168)
T d1uufa2         108 ---DDFTTLLKRDGTMTLV  123 (168)
T ss_dssp             ---HHHHTTEEEEEEEEEC
T ss_pred             ---HHHHHHHhcCCEEEEe
Confidence               3345566666666655

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=97.22  E-value=0.00024  Score=58.73  Aligned_cols=96  Identities=11%  Similarity=0.198  Sum_probs=61.4

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCc---------c---ccChhhhccCCCEEEEec
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNI---------A---SLGLEDIWPLADYITVHT  160 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv---------~---~~~l~ell~~aDvV~l~~  160 (333)
                      .+..+||+|||.|++|+.+|-.+...|.  ++..||.......++.+..         .   ...-.+.+++||+|+++.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4567899999999999999999988877  8999998653332222111         0   112346688999999975


Q ss_pred             CCc--h-hhHh-hc--cH-------HHHhccCCCcEEEEccCC
Q psy6348         161 PLI--P-QTKN-LI--NA-------EVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       161 P~t--~-~t~~-li--~~-------~~~~~mk~gailIN~aRg  190 (333)
                      -..  + +++- ++  +.       ..+....+++++|+++..
T Consensus        97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            422  2 2221 11  11       123334678889988653

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=97.19  E-value=0.00033  Score=61.69  Aligned_cols=68  Identities=10%  Similarity=0.056  Sum_probs=58.4

Q ss_pred             Ccccc-ChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         140 NIASL-GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       140 gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      |++.. +..|++++||+|++++|..+.+..++ ++..+.+++|++++|++.........+.+.+++..+.
T Consensus       128 Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         128 GLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             TCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            34333 67799999999999999777777777 7788999999999999999999999999999887775

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.17  E-value=0.0003  Score=58.50  Aligned_cols=104  Identities=16%  Similarity=0.220  Sum_probs=64.7

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEE-EcCCCCH--HHHHhcCc----c-ccChhhhc--cCCCEEEEecCCchhhHh
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIG-FDPMVSV--EDAAKLNI----A-SLGLEDIW--PLADYITVHTPLIPQTKN  168 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~-~d~~~~~--~~a~~~gv----~-~~~l~ell--~~aDvV~l~~P~t~~t~~  168 (333)
                      ++||||+|.||+..++.++.. +++|.+ +|+....  ..+++.++    . +.++++++  .+.|+|++++|...... 
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~-   81 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVE-   81 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHH-
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcc-
Confidence            799999999999999988876 678775 5775422  23344553    2 23788887  45899999998543322 


Q ss_pred             hccHHHHhccCCCcEEE-Ec-cCCcccchHhHHhhhhcCCce
Q psy6348         169 LINAEVLKKCKKGVRVV-NV-ARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       169 li~~~~~~~mk~gailI-N~-aRg~~vd~~aL~~aL~~g~i~  208 (333)
                          -....++.|.-++ -- .--.+-+.+.|.+..++.++.
T Consensus        82 ----~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~  119 (184)
T d1ydwa1          82 ----WAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  119 (184)
T ss_dssp             ----HHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             ----hhhhhhhccceeecccccccCHHHHHHHHHHHHhhCCE
Confidence                2233345554433 21 112334445577777666554

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.17  E-value=0.00017  Score=65.19  Aligned_cols=113  Identities=18%  Similarity=0.189  Sum_probs=76.7

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEc--------CCC-CHHHHHhc----C-c-----cccChhhhcc-C
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFD--------PMV-SVEDAAKL----N-I-----ASLGLEDIWP-L  152 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d--------~~~-~~~~a~~~----g-v-----~~~~l~ell~-~  152 (333)
                      ..+|.|||+.|=|+|++|+.+|+.|...|++|++.+        +.- +.+...+.    + +     ...+.++++. .
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  110 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence            457999999999999999999999999999998864        221 22222211    1 1     1123445554 7


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCceEEEecc
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCGGAALDV  214 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gaalDV  214 (333)
                      ||+++-|     .+.+.|+.+....++- .+++-.+.+.+ ..++ .+.|.+..+. ++=|+
T Consensus       111 ~DIliPa-----A~~~~I~~~~a~~l~a-k~I~EgAN~P~-t~eA-~~~L~~~gI~-viPD~  163 (293)
T d1hwxa1         111 CDILIPA-----ASEKQLTKSNAPRVKA-KIIAEGANGPT-TPQA-DKIFLERNIM-VIPDL  163 (293)
T ss_dssp             CSEEEEC-----SSSSCBCTTTGGGCCC-SEEECCSSSCB-CHHH-HHHHHHTTCE-EECHH
T ss_pred             ccEEeec-----cccccccHHHHHHHhh-CEEeccCCCCC-Ccch-HHHHHHCCCE-EeChh
Confidence            9999887     4567888888888865 36677777775 4444 3667666664 45454

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=97.12  E-value=0.00073  Score=50.87  Aligned_cols=65  Identities=18%  Similarity=0.200  Sum_probs=50.0

Q ss_pred             CCCEEEEEecChHH-HHHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIG-REVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG-~~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~~P  161 (333)
                      +.|++=+||.|.+| +++|+.|+..|++|.++|...++  +...+.|+...  .-.+.+++.|+|+..-.
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~A   76 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSA   76 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTT
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCC
Confidence            46799999999999 56799999999999999987643  45566787643  33455688998877643

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.09  E-value=0.0012  Score=53.17  Aligned_cols=92  Identities=14%  Similarity=0.123  Sum_probs=58.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc---------Cc--cc--cChhhhccCCCEEEEecC--
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL---------NI--AS--LGLEDIWPLADYITVHTP--  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~---------gv--~~--~~l~ell~~aDvV~l~~P--  161 (333)
                      .||+|||.|.+|..+|-.+...|.  ++..||.......++.+         ..  ..  ..-.|.+++||+|++...  
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~~   80 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA   80 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecccc
Confidence            489999999999999988876664  79999976533222211         11  11  123478999999999864  


Q ss_pred             Cchh---------hHhhcc--HHHHhccCCCcEEEEccCC
Q psy6348         162 LIPQ---------TKNLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       162 ~t~~---------t~~li~--~~~~~~mk~gailIN~aRg  190 (333)
                      ..+.         +..++.  .+.+....|.+++++++..
T Consensus        81 ~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNP  120 (142)
T d1ojua1          81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNP  120 (142)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSS
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCC
Confidence            2221         111111  1223445678999999763

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.08  E-value=0.00041  Score=57.60  Aligned_cols=69  Identities=23%  Similarity=0.283  Sum_probs=52.0

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHH--HHhc----C------ccccChhhhccCCCEEEEec
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVED--AAKL----N------IASLGLEDIWPLADYITVHT  160 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~--a~~~----g------v~~~~l~ell~~aDvV~l~~  160 (333)
                      +.+++||++.|+|.|..+++++..|...| +|++++|+.+...  +...    .      +...+++..+..+|+++.++
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t   91 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT   91 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence            45689999999999999999999998888 9999999753221  1111    1      12235667788999999999


Q ss_pred             CC
Q psy6348         161 PL  162 (333)
Q Consensus       161 P~  162 (333)
                      |.
T Consensus        92 p~   93 (177)
T d1nvta1          92 PI   93 (177)
T ss_dssp             CT
T ss_pred             cc
Confidence            84

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.0011  Score=49.36  Aligned_cols=62  Identities=26%  Similarity=0.300  Sum_probs=48.7

Q ss_pred             CEEEEEecChHHH-HHHHHHhhCCCEEEEEcCCCCH--HHHHhcCcccc--ChhhhccCCCEEEEec
Q psy6348          99 KTLAVLGLGRIGR-EVALRMQAFGMKVIGFDPMVSV--EDAAKLNIASL--GLEDIWPLADYITVHT  160 (333)
Q Consensus        99 ktvGIIGlG~IG~-~vA~~l~~~G~~V~~~d~~~~~--~~a~~~gv~~~--~l~ell~~aDvV~l~~  160 (333)
                      +++=+||.|-+|. ++|+.|+..|++|.++|...++  +..++.|++..  .-.+.+.++|+|+..-
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~Ss   68 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTP   68 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECT
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEec
Confidence            5788999999997 7899999999999999987644  45677787653  2334567899887763

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.07  E-value=0.0006  Score=57.17  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=37.0

Q ss_pred             CccccCCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          92 TGTELYGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        92 ~g~~l~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+.+|.||++-|.| -|.||+.+|+.|...|++|+..++..
T Consensus        17 ~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          17 AGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             TTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            46789999999999 59999999999999999999999975

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.05  E-value=0.0002  Score=59.55  Aligned_cols=87  Identities=22%  Similarity=0.311  Sum_probs=60.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Chhh-h---c--cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GLED-I---W--PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l~e-l---l--~~aDvV~l~~P~  162 (333)
                      .|.+|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|...+      ++.+ +   .  ...|+|+-+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            47899999999999999999999998 799999876 3466777885321      1111 1   1  237888887763


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .. +   + +..+..++++..++-++
T Consensus       107 ~~-~---~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2         107 SE-T---L-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             TT-H---H-HHHHHHEEEEEEEEECC
T ss_pred             HH-H---H-HHHHHHHhcCCEEEEEe
Confidence            21 1   1 44456677777777764

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.02  E-value=0.00043  Score=56.42  Aligned_cols=46  Identities=28%  Similarity=0.385  Sum_probs=39.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|.+|.|+|.|.+|...++.++.+|.+|++.|+.. ..+.++++|..
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~   73 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGAS   73 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS
T ss_pred             CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCcc
Confidence            47899999999999999999999999999999876 34566777753

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.01  E-value=0.00041  Score=56.37  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=60.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------C----hhhhccCCCEEEEecCCchh
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------G----LEDIWPLADYITVHTPLIPQ  165 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~----l~ell~~aDvV~l~~P~t~~  165 (333)
                      .|.+|.|+|.|.||...++.++..|.+|++.++.. ..+.++++|...+      +    +.+.....|.++.+.+ .+.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~  105 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP  105 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence            57899999999999999999999999999999865 3456677776432      1    2222344566666554 222


Q ss_pred             hHhhccHHHHhccCCCcEEEEcc
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +    -...+..++++..++.++
T Consensus       106 ~----~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2         106 A----FQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             H----HHHHHHHEEEEEEEEECC
T ss_pred             H----HHHHHHHhccCCceEecc
Confidence            2    145566677777777764

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.99  E-value=0.00064  Score=56.33  Aligned_cols=71  Identities=14%  Similarity=0.114  Sum_probs=50.8

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHH--HHHhcC----ccccChhh-hccCCCEEEEecCCc
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVE--DAAKLN----IASLGLED-IWPLADYITVHTPLI  163 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~--~a~~~g----v~~~~l~e-ll~~aDvV~l~~P~t  163 (333)
                      +..+.||++.|+|.|..+++++..|...+.+|+.++|+.+..  .++..+    +...+.++ .+.++|+|+.++|..
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g   90 (171)
T d1p77a1          13 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG   90 (171)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence            356889999999999999999999888888999999975321  112221    22223332 367899999999853

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.98  E-value=0.00058  Score=62.98  Aligned_cols=88  Identities=17%  Similarity=0.248  Sum_probs=64.4

Q ss_pred             CCEEEEEecChHHHHHHHHHh-hCCC-EEEEEcCCCCH--HHHHh----cCccc--c-ChhhhccCCCEEEEecCCchhh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQ-AFGM-KVIGFDPMVSV--EDAAK----LNIAS--L-GLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~-~~G~-~V~~~d~~~~~--~~a~~----~gv~~--~-~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      -++++|||.|..+..-++.+. -++. +|.+||+....  ..+++    .|+..  + +++++++.||+|+.+++ ++.+
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~  206 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY  206 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence            369999999999998887664 4665 89999997632  22222    24433  3 79999999999999986 3444


Q ss_pred             HhhccHHHHhccCCCcEEEEccC
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aR  189 (333)
                      .-++..+   .+|||+.+..++.
T Consensus       207 ~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         207 ATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             EEEECGG---GCCTTCEEEECSC
T ss_pred             Ccccchh---hcCCCCEEeeccc
Confidence            5677654   4799999988865

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00032  Score=59.09  Aligned_cols=66  Identities=15%  Similarity=0.061  Sum_probs=49.3

Q ss_pred             CCCEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCccc--------cChhhhccCCCEEEEecCC
Q psy6348          97 YGKTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIAS--------LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~--------~~l~ell~~aDvV~l~~P~  162 (333)
                      ..|||.|+| .|.+|+.+++.|.+.|++|.+++|.++.. .....+++.        .+++++++.+|+|+.++..
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 59999999999999999999998865321 111223332        1466789999999988753

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.96  E-value=0.00045  Score=55.99  Aligned_cols=33  Identities=27%  Similarity=0.508  Sum_probs=30.7

Q ss_pred             CEEEEE-ecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVL-GLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGII-GlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +||+|| |.|.||+.+|++|...|++|..++|..
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999 889999999999999999999999865

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00038  Score=50.66  Aligned_cols=35  Identities=26%  Similarity=0.366  Sum_probs=32.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV  133 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  133 (333)
                      |||||+|-|..|+.++...+.+|++++++||....
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            69999999999999999999999999999997643

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00057  Score=56.75  Aligned_cols=104  Identities=14%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             CEEEEEecChHHHH-HHHHHhhCC--CEEE-EEcCCCCH--HHHHhcCcc--ccChhhhcc--CCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAFG--MKVI-GFDPMVSV--EDAAKLNIA--SLGLEDIWP--LADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~G--~~V~-~~d~~~~~--~~a~~~gv~--~~~l~ell~--~aDvV~l~~P~t~~t~~  168 (333)
                      .++||||+|.+|+. .+..++.++  +++. ++|+....  ..+++.+..  +.+++|+++  +.|+|++++|...... 
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~-   82 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLP-   82 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHH-
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccc-
Confidence            37999999999987 477777654  4666 46886522  223445653  348999885  5899999998433322 


Q ss_pred             hccHHHHhccCCC-cEEEEc-cCCcccchHhHHhhhhcCCc
Q psy6348         169 LINAEVLKKCKKG-VRVVNV-ARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       169 li~~~~~~~mk~g-ailIN~-aRg~~vd~~aL~~aL~~g~i  207 (333)
                       +-...+   +.| .+++.- ---.+-+..+|.+..++.+.
T Consensus        83 -~~~~al---~~gk~V~~EKPl~~~~~e~~~l~~~~~~~~~  119 (181)
T d1zh8a1          83 -FIEKAL---RKGVHVICEKPISTDVETGKKVVELSEKSEK  119 (181)
T ss_dssp             -HHHHHH---HTTCEEEEESSSSSSHHHHHHHHHHHHHCSS
T ss_pred             -cccccc---ccchhhhcCCCCcCCHHHHHHHHHHHHHhCC
Confidence             223333   333 344432 11233444556666655443

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=96.85  E-value=0.00077  Score=54.45  Aligned_cols=91  Identities=21%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhc----C-----c-c--ccChhhhccCCCEEEEecCC--
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKL----N-----I-A--SLGLEDIWPLADYITVHTPL--  162 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~----g-----v-~--~~~l~ell~~aDvV~l~~P~--  162 (333)
                      .||+|||.|.+|+.+|..+...|.  ++..+|.......++.+    .     . .  ..+-.+.+++||+|+++.-.  
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~~~   81 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGPRQ   81 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccccc
Confidence            489999999999999988876665  89999986533322211    1     1 1  11233568899999998632  


Q ss_pred             ch-hhHh-hc--cH-------HHHhccCCCcEEEEccC
Q psy6348         163 IP-QTKN-LI--NA-------EVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 t~-~t~~-li--~~-------~~~~~mk~gailIN~aR  189 (333)
                      .+ +++- ++  +.       ..+....|+++++.++-
T Consensus        82 ~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  119 (143)
T d1llda1          82 KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN  119 (143)
T ss_dssp             CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             CCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            22 1111 11  11       22344567788888763

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.83  E-value=0.0012  Score=60.00  Aligned_cols=87  Identities=15%  Similarity=0.237  Sum_probs=63.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhh-CCC-EEEEEcCCCCHH-----HHHhcCccc-cChhhhccCCCEEEEecCCchhhHhh
Q psy6348          98 GKTLAVLGLGRIGREVALRMQA-FGM-KVIGFDPMVSVE-----DAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~-~G~-~V~~~d~~~~~~-----~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      -+++||||.|..++..++.+.. +.. +|.+|+|+....     .....++.. .+.++.+..||+|+.++|   .+.-+
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~---s~~P~  201 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTP---SRKPV  201 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCC---CSSCC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEecc---Ccccc
Confidence            3589999999999999887764 554 899999875221     122334433 367888999999999987   45566


Q ss_pred             ccHHHHhccCCCcEEEEccCC
Q psy6348         170 INAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aRg  190 (333)
                      +..+   .+|+|+.+..++..
T Consensus       202 ~~~~---~l~~G~hv~~iGs~  219 (320)
T d1omoa_         202 VKAE---WVEEGTHINAIGAD  219 (320)
T ss_dssp             BCGG---GCCTTCEEEECSCC
T ss_pred             cchh---hcCCCCeEeecCCc
Confidence            7654   47999999998653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.83  E-value=0.00077  Score=55.49  Aligned_cols=95  Identities=15%  Similarity=0.218  Sum_probs=59.1

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCc---------c---ccChhhhccCCCEEEEec
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNI---------A---SLGLEDIWPLADYITVHT  160 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv---------~---~~~l~ell~~aDvV~l~~  160 (333)
                      .+...||+|||.|.+|..+|..+...|.  ++..||.......++.+.+         .   ..+-.+.+++||+|+++.
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence            3455699999999999999999987766  8999998653322222111         1   112345568999999986


Q ss_pred             CC--ch-hhHh-hc--cHH-------HHhccCCCcEEEEccC
Q psy6348         161 PL--IP-QTKN-LI--NAE-------VLKKCKKGVRVVNVAR  189 (333)
Q Consensus       161 P~--t~-~t~~-li--~~~-------~~~~mk~gailIN~aR  189 (333)
                      ..  .+ .++. ++  +.+       .+....+++++++++.
T Consensus        96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            42  22 1111 11  111       1233467889998866

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.81  E-value=0.00084  Score=57.77  Aligned_cols=65  Identities=14%  Similarity=0.107  Sum_probs=46.0

Q ss_pred             CEEEEEecChHHHH-HHHHHhhC-CCEEE-EEcCCCC--HHHHHhcCcc------ccChhhhcc--CCCEEEEecCCc
Q psy6348          99 KTLAVLGLGRIGRE-VALRMQAF-GMKVI-GFDPMVS--VEDAAKLNIA------SLGLEDIWP--LADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGlG~IG~~-vA~~l~~~-G~~V~-~~d~~~~--~~~a~~~gv~------~~~l~ell~--~aDvV~l~~P~t  163 (333)
                      -+|||||+|.+|+. ++..++.. +++|+ ++|++..  ...++++|+.      +.++++++.  +.|+|++++|..
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~  111 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS  111 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchh
Confidence            48999999999985 55666554 77877 5788652  2334555553      347899886  589999999843

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.0036  Score=51.17  Aligned_cols=86  Identities=20%  Similarity=0.196  Sum_probs=57.9

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhhhc------cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLEDIW------PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~ell------~~aDvV~l~~P~  162 (333)
                      .|.+|.|.|. |.+|....+.++.+|++|++.++.. ..+.++++|...+      ++.+-+      ...|+|+-++. 
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g-  106 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA-  106 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH-
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeeccc-
Confidence            5789999995 9999999999999999999988754 3355667776321      222211      23676666543 


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                       ..    .-...+..|+++..++.++
T Consensus       107 -~~----~~~~~~~~l~~~G~iv~~G  127 (174)
T d1yb5a2         107 -NV----NLSKDLSLLSHGGRVIVVG  127 (174)
T ss_dssp             -HH----HHHHHHHHEEEEEEEEECC
T ss_pred             -HH----HHHHHHhccCCCCEEEEEe
Confidence             11    1244566677777777764

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.75  E-value=0.00054  Score=56.54  Aligned_cols=87  Identities=15%  Similarity=0.150  Sum_probs=57.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC-CHHHHHhcCcccc------Chhhhc-----cCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV-SVEDAAKLNIASL------GLEDIW-----PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~-~~~~a~~~gv~~~------~l~ell-----~~aDvV~l~~P~t  163 (333)
                      .|.+|.|+|.|.||...++.++.+|.+ |++.|+.. ..+.++++|...+      ++.+.+     ...|+|+-|+.. 
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~-  106 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS-  106 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC-
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCc-
Confidence            588999999999999999999999985 45667765 3466777776321      122211     126777777652 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      +.+.    +..+..++++..++.++
T Consensus       107 ~~~~----~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2         107 PEIL----KQGVDALGILGKIAVVG  127 (174)
T ss_dssp             HHHH----HHHHHTEEEEEEEEECC
T ss_pred             HHHH----HHHHhcccCceEEEEEe
Confidence            2211    34556677777777664

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=96.69  E-value=0.0011  Score=54.63  Aligned_cols=65  Identities=20%  Similarity=0.150  Sum_probs=47.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCCCHH--HHHhcCccccChhhhccCCCEEEEecCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMVSVE--DAAKLNIASLGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~~~~--~a~~~gv~~~~l~ell~~aDvV~l~~P~  162 (333)
                      .+|+|.|+|.|..+++++..|+..|. +|.+++|+....  .+...+....+.. -..++|+|+.++|.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~-~~~~~DliINaTpi   83 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSL-ENQQADILVNVTSI   83 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCC-TTCCCSEEEECSST
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhcc-cccchhhheecccc
Confidence            57899999999999999999999997 799999965321  2233344333211 13578999988883

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.69  E-value=0.0039  Score=48.28  Aligned_cols=99  Identities=11%  Similarity=0.143  Sum_probs=70.3

Q ss_pred             CEEEEEec----ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhhccHH
Q psy6348          99 KTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus        99 ktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      |+|+|||.    |+.|..+.+.|+..|++|+..+|....    -.|.... ++.++-..-|++++++| .+.+..++. +
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~-~   75 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-E   75 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-H
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc----ccCccccccchhccccceEEEEEeC-HHHHHHHHH-H
Confidence            68999995    689999999999999999999986422    2365543 89999889999999999 345555554 3


Q ss_pred             HHhccCCCcEEEEccCCcccchHhHHhhhhcCCce
Q psy6348         174 VLKKCKKGVRVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       174 ~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ..+ +....+++..+   . ..+++.+.+++..+.
T Consensus        76 ~~~-~g~k~v~~~~g---~-~~~~~~~~a~~~gi~  105 (116)
T d1y81a1          76 AVE-AGFKKLWFQPG---A-ESEEIRRFLEKAGVE  105 (116)
T ss_dssp             HHH-TTCCEEEECTT---S-CCHHHHHHHHHHTCE
T ss_pred             HHh-cCCceEEeccc---h-hhHHHHHHHHHcCCE
Confidence            333 44556666532   2 344567777766564

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.63  E-value=0.0017  Score=52.39  Aligned_cols=92  Identities=18%  Similarity=0.232  Sum_probs=59.4

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCc-----------cccChhhhccCCCEEEEecC--C
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNI-----------ASLGLEDIWPLADYITVHTP--L  162 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv-----------~~~~l~ell~~aDvV~l~~P--~  162 (333)
                      .||+|||. |.+|+.+|..+...|.  ++..+|.......+.++.-           ...+..+.++.||+|+++.-  .
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~   80 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR   80 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence            48999995 9999999999987776  7999998654333333211           01145678999999999854  2


Q ss_pred             ch-hh--------Hhhcc--HHHHhccCCCcEEEEccCC
Q psy6348         163 IP-QT--------KNLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       163 t~-~t--------~~li~--~~~~~~mk~gailIN~aRg  190 (333)
                      .+ ++        ..++.  .+.+....|+++++.++..
T Consensus        81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNP  119 (144)
T d1mlda1          81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNP  119 (144)
T ss_dssp             CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSC
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            22 11        11111  1123344788999998553

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=96.59  E-value=0.0048  Score=50.89  Aligned_cols=87  Identities=24%  Similarity=0.243  Sum_probs=59.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc-C---hh----hh-----ccCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL-G---LE----DI-----WPLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~-~---l~----el-----l~~aDvV~l~~P  161 (333)
                      .|.+|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|...+ +   .+    +.     -...|+++-++.
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G  107 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG  107 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecc
Confidence            57899999999999999999999998 688889876 4567788886422 1   11    11     134788877775


Q ss_pred             CchhhHhhccHHHHhccCCC-cEEEEcc
Q psy6348         162 LIPQTKNLINAEVLKKCKKG-VRVVNVA  188 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~g-ailIN~a  188 (333)
                      . +.+    -.+.+..++++ ..++-++
T Consensus       108 ~-~~~----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2         108 T-AQT----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             C-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred             c-chH----HHHHHHHhhcCCeEEEecC
Confidence            2 222    14455666664 4555553

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.59  E-value=0.0015  Score=54.66  Aligned_cols=63  Identities=29%  Similarity=0.357  Sum_probs=42.1

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEEE-cCCCCHHHH--HhcC-----------------ccc-cChhhhccCCCEEE
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIGF-DPMVSVEDA--AKLN-----------------IAS-LGLEDIWPLADYIT  157 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~a--~~~g-----------------v~~-~~l~ell~~aDvV~  157 (333)
                      ||||.|||+||+.+++.+... +++|++. |+.+.....  ...+                 +.. -++++++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999998754 5788876 444333221  1111                 111 14566667788888


Q ss_pred             EecCC
Q psy6348         158 VHTPL  162 (333)
Q Consensus       158 l~~P~  162 (333)
                      -|+|.
T Consensus        83 ecTG~   87 (178)
T d1b7go1          83 DTTPN   87 (178)
T ss_dssp             ECCST
T ss_pred             ECCCC
Confidence            88874

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.0011  Score=54.45  Aligned_cols=85  Identities=18%  Similarity=0.246  Sum_probs=58.1

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhh------hccCCCEEEEecCCchhhH
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLED------IWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~e------ll~~aDvV~l~~P~t~~t~  167 (333)
                      .|++|.|.|. |.+|+...+.++.+|++|++.++.. ..+.++++|...+ +..+      ....+|+|+-++..   + 
T Consensus        27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~---~-  102 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK---E-  102 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT---T-
T ss_pred             CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch---h-
Confidence            5889999995 9999999999999999999998765 3466777776432 2211      12446777665431   1 


Q ss_pred             hhccHHHHhccCCCcEEEEcc
Q psy6348         168 NLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~a  188 (333)
                        + ...++.++++..++.++
T Consensus       103 --~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2         103 --V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             --H-HHHHTTEEEEEEEEEC-
T ss_pred             --H-HHHHHHHhcCCcEEEEe
Confidence              1 34566677777777663

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0026  Score=50.93  Aligned_cols=84  Identities=14%  Similarity=0.067  Sum_probs=55.0

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH--H---HHHhcCcccc-----C---hhh-hccCCCEEEEecCCchh
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV--E---DAAKLNIASL-----G---LED-IWPLADYITVHTPLIPQ  165 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~--~---~a~~~gv~~~-----~---l~e-ll~~aDvV~l~~P~t~~  165 (333)
                      ++-|+|+|++|+.+++.|...|.+|++.|..+..  +   .....|+..+     +   |++ -+.+||.++++++....
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~   84 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDAD   84 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHH
Confidence            5899999999999999999999999999876532  1   1222355432     1   222 26789999999985433


Q ss_pred             hHhhccHHHHhccCCCcEEE
Q psy6348         166 TKNLINAEVLKKCKKGVRVV  185 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailI  185 (333)
                        ++.-......+.+...+|
T Consensus        85 --n~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          85 --NAFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             --HHHHHHHHHHHTSSSCEE
T ss_pred             --HHHHHHHHHHhCCCCceE
Confidence              333334444455554333

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.50  E-value=0.0079  Score=48.50  Aligned_cols=93  Identities=16%  Similarity=0.127  Sum_probs=63.6

Q ss_pred             cCCCEEEEEec---ChHHHHHHHHHhhCCCEEEEEcCCC----CHHHHHhcCcc--c-cChhhhccCCCEEEEecCCch-
Q psy6348          96 LYGKTLAVLGL---GRIGREVALRMQAFGMKVIGFDPMV----SVEDAAKLNIA--S-LGLEDIWPLADYITVHTPLIP-  164 (333)
Q Consensus        96 l~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~----~~~~a~~~gv~--~-~~l~ell~~aDvV~l~~P~t~-  164 (333)
                      |.|+||++||=   |++..+++..+..||++++.+-|..    ........|..  . .++++.++++|+|..----.. 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999996   5699999999999999876544322    22223333433  2 279999999999875421100 


Q ss_pred             -----h-----hHhhccHHHHhccCCCcEEEEcc
Q psy6348         165 -----Q-----TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       165 -----~-----t~~li~~~~~~~mk~gailIN~a  188 (333)
                           .     ..-.++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L  114 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL  114 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence                 0     11125778888899999999884

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.43  E-value=0.0019  Score=52.84  Aligned_cols=87  Identities=15%  Similarity=0.161  Sum_probs=55.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc-C-----hhhhc-----cCCCEEEEecCCc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL-G-----LEDIW-----PLADYITVHTPLI  163 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~-~-----l~ell-----~~aDvV~l~~P~t  163 (333)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.+++.|...+ +     .++..     ...|+++-++...
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~  111 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQ  111 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcc
Confidence            47899999999999999999998886 778888865 3455666665321 1     11111     2367777666521


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      . +   + ...+..++++..++.++
T Consensus       112 ~-~---~-~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         112 A-T---V-DYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             H-H---H-HHGGGGEEEEEEEEECC
T ss_pred             h-H---H-HHHHHHHhCCCEEEEEe
Confidence            1 1   1 33455667776666653

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.43  E-value=0.0027  Score=52.69  Aligned_cols=64  Identities=31%  Similarity=0.362  Sum_probs=41.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC-CEEEEE-cCCCCHH--HHHhcCcc------------------c-cChhhhccCCCE
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG-MKVIGF-DPMVSVE--DAAKLNIA------------------S-LGLEDIWPLADY  155 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G-~~V~~~-d~~~~~~--~a~~~gv~------------------~-~~l~ell~~aDv  155 (333)
                      ++|||-|||+||+.+.+.+...+ ++|++. |+.+...  .+...+..                  . -+..+++.++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            58999999999999999886554 777765 4433322  22222211                  1 034556677888


Q ss_pred             EEEecCC
Q psy6348         156 ITVHTPL  162 (333)
Q Consensus       156 V~l~~P~  162 (333)
                      |+-|+|.
T Consensus        82 ViEcTG~   88 (171)
T d1cf2o1          82 VIDCTPE   88 (171)
T ss_dssp             EEECCST
T ss_pred             EEEccCC
Confidence            8888774

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.41  E-value=0.0087  Score=49.23  Aligned_cols=46  Identities=30%  Similarity=0.488  Sum_probs=40.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|..
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~   76 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT   76 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence            58899999999999999999999995 899999977 55778888864

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=96.33  E-value=0.0062  Score=48.35  Aligned_cols=102  Identities=23%  Similarity=0.263  Sum_probs=70.5

Q ss_pred             CCCEEEEEec----ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          97 YGKTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        97 ~gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .-|+|+|||.    ++.|..+.+.|+..|++++.|.+......  -.|... .++.++-..-|++++++| .+.+..++.
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~--i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~   88 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLP   88 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHH
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce--eeceecccchhhccCCCceEEEecc-HHHHHHHHH
Confidence            4579999998    78999999999999999999988543211  235543 378888888999999999 455555553


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      + .. .+...++++..+   ..+++.. +..++..+
T Consensus        89 ~-~~-~~g~k~i~~q~G---~~~~e~~-~~a~~~Gi  118 (136)
T d1iuka_          89 E-VL-ALRPGLVWLQSG---IRHPEFE-KALKEAGI  118 (136)
T ss_dssp             H-HH-HHCCSCEEECTT---CCCHHHH-HHHHHTTC
T ss_pred             H-HH-hhCCCeEEEecC---ccCHHHH-HHHHHcCC
Confidence            3 32 345667887653   3455544 44444433

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.32  E-value=0.00049  Score=56.64  Aligned_cols=102  Identities=17%  Similarity=0.141  Sum_probs=57.7

Q ss_pred             EEEEEecChHHHHHHHHHhhCC----CEEEEEcCCCCHHHHHhcCccccChhhhcc--CCCEEEEecCCchhhHhhccHH
Q psy6348         100 TLAVLGLGRIGREVALRMQAFG----MKVIGFDPMVSVEDAAKLNIASLGLEDIWP--LADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G----~~V~~~d~~~~~~~a~~~gv~~~~l~ell~--~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      +|||||+|.||+..++.++...    ..+...+..  .+.....+....+++|++.  +.|+|++++|...  ..-+-..
T Consensus         9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~~~--H~~~~~~   84 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSR--RELGSLDEVRQISLEDALRSQEIDVAYICSESSS--HEDYIRQ   84 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECS--SCCCEETTEEBCCHHHHHHCSSEEEEEECSCGGG--HHHHHHH
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccch--HHHHHhhccCcCCHHHHHhCCCcchhhhcccccc--ccccccc
Confidence            7999999999999988877532    344433322  1112223445568889875  5689999999433  2222233


Q ss_pred             HHhccCCCcEEEEc-cCCcccchHhHHhhhhcCCc
Q psy6348         174 VLKKCKKGVRVVNV-ARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       174 ~~~~mk~gailIN~-aRg~~vd~~aL~~aL~~g~i  207 (333)
                      .++.=|  .+++.- ---.+-+.++|.++.++.+.
T Consensus        85 al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~  117 (172)
T d1lc0a1          85 FLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGR  117 (172)
T ss_dssp             HHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTC
T ss_pred             ccccch--hhhcCCCccccHHHHHHHHHHHHHcCC
Confidence            333211  344442 12344555666665544433

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=96.27  E-value=0.013  Score=46.86  Aligned_cols=92  Identities=14%  Similarity=0.169  Sum_probs=55.9

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCCC--EEEEEcCCCCHHH--H--Hhc----Cc----cc-cChhhhccCCCEEEEecC-
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFGM--KVIGFDPMVSVED--A--AKL----NI----AS-LGLEDIWPLADYITVHTP-  161 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G~--~V~~~d~~~~~~~--a--~~~----gv----~~-~~l~ell~~aDvV~l~~P-  161 (333)
                      .||+||| .|.+|+.+|..+...|.  ++..||.....+.  .  .++    .+    .. ..-.+.+++||+|+++.- 
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~   80 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI   80 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence            4899999 59999999999887665  8999996432222  1  111    11    11 122345689999999843 


Q ss_pred             -Cchh-h--------Hhhcc--HHHHhccCCCcEEEEccCC
Q psy6348         162 -LIPQ-T--------KNLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       162 -~t~~-t--------~~li~--~~~~~~mk~gailIN~aRg  190 (333)
                       ..+. +        ..++.  .+.+....|+++++.++..
T Consensus        81 ~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNP  121 (142)
T d1o6za1          81 PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNP  121 (142)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSS
T ss_pred             ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecCh
Confidence             3221 2        11221  1234556778899988543

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.23  E-value=0.0047  Score=48.67  Aligned_cols=105  Identities=17%  Similarity=0.164  Sum_probs=69.5

Q ss_pred             cCCCEEEEEec----ChHHHHHHHHHhhCC-CEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecCCchhhHhh
Q psy6348          96 LYGKTLAVLGL----GRIGREVALRMQAFG-MKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        96 l~gktvGIIGl----G~IG~~vA~~l~~~G-~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      +.-|+|+|||.    |+.|..+.+.|+..| .+|+..+|....    -.|...+ +++|+-..-|++++++| .+.+..+
T Consensus         6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~   80 (129)
T d2csua1           6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDT   80 (129)
T ss_dssp             TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHHH
T ss_pred             CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc----cCCeEeecchhhcCCCCceEEEecC-hHHhHHH
Confidence            45689999997    899999999998866 699999996422    2366544 89999999999999999 4556666


Q ss_pred             ccHHHHhccCCC-cEEEEccCCc-----ccchHhHHhhhhcCCc
Q psy6348         170 INAEVLKKCKKG-VRVVNVARGG-----IVDENALLDSLKCGHC  207 (333)
Q Consensus       170 i~~~~~~~mk~g-ailIN~aRg~-----~vd~~aL~~aL~~g~i  207 (333)
                      +. +..+ ..-. ++++..+-++     ...+++|.+..++..+
T Consensus        81 ~~-~~~~-~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          81 LI-QCGE-KGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             HH-HHHH-HTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             HH-HHHH-cCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            53 3322 3333 3343332222     2334456665555444

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=96.20  E-value=0.0028  Score=49.39  Aligned_cols=83  Identities=13%  Similarity=0.099  Sum_probs=53.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhcCcccc-----C---hhh-hccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKLNIASL-----G---LED-IWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~gv~~~-----~---l~e-ll~~aDvV~l~~P~t~~t~~  168 (333)
                      |++-|+|+|++|+.+++.|++.+  |.+.|..... +.....|+.+.     +   |.+ -+.+|+.++++.+...  .+
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~~--i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~--~n   76 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGSE--VFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS--ET   76 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGGG--EEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH--HH
T ss_pred             CEEEEECCCHHHHHHHHHHcCCC--CEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh--hh
Confidence            56889999999999999998665  5555655533 34455666432     2   222 2678999999988543  34


Q ss_pred             hccHHHHhccCCCcEEE
Q psy6348         169 LINAEVLKKCKKGVRVV  185 (333)
Q Consensus       169 li~~~~~~~mk~gailI  185 (333)
                      +.-....+.+.|...++
T Consensus        77 ~~~~~~~r~~~~~~~ii   93 (129)
T d2fy8a1          77 IHCILGIRKIDESVRII   93 (129)
T ss_dssp             HHHHHHHHHHCSSSCEE
T ss_pred             HHHHHHHHHHCCCceEE
Confidence            43344455566654333

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.14  E-value=0.023  Score=46.13  Aligned_cols=94  Identities=14%  Similarity=0.117  Sum_probs=66.1

Q ss_pred             ccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC---CHHH---HHh----cC--ccc-cChhhhccCCCEEEEec
Q psy6348          95 ELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV---SVED---AAK----LN--IAS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus        95 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~---~~~~---a~~----~g--v~~-~~l~ell~~aDvV~l~~  160 (333)
                      +|.|+||++||=| ++..+++..+..||+++..+.|..   +.+.   .++    .+  ++. .++++.++.+|+|..-.
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            4789999999975 577888899999999999998753   2221   111    11  122 37899999999998643


Q ss_pred             CCc-------hh-----hHhhccHHHHhccCCCcEEEEcc
Q psy6348         161 PLI-------PQ-----TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       161 P~t-------~~-----t~~li~~~~~~~mk~gailIN~a  188 (333)
                      =..       +.     ..-.++.+.++.+|++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl  120 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL  120 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence            111       11     11245788899999999999984

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.017  Score=46.65  Aligned_cols=93  Identities=12%  Similarity=0.107  Sum_probs=62.2

Q ss_pred             cCCCEEEEEec--ChHHHHHHHHHhhCCCEEEEEcCCC---CHHH-------HHhcCc--cc-cChhhhccCCCEEEEec
Q psy6348          96 LYGKTLAVLGL--GRIGREVALRMQAFGMKVIGFDPMV---SVED-------AAKLNI--AS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus        96 l~gktvGIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~gv--~~-~~l~ell~~aDvV~l~~  160 (333)
                      |.|++|++||=  .++-.+++..+..||+++..+.|..   ....       +.+.+.  .. .++++.++.+|+|..-.
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            67999999994  5899999999999999999988742   2211       122232  22 37899999999998765


Q ss_pred             CCchh------------hHhhc-cHHHHhccCCCcEEEEcc
Q psy6348         161 PLIPQ------------TKNLI-NAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       161 P~t~~------------t~~li-~~~~~~~mk~gailIN~a  188 (333)
                      --...            ....+ .......+|++++|..+.
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l  121 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL  121 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence            32110            01112 233344578889998884

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.12  E-value=0.0054  Score=50.75  Aligned_cols=64  Identities=31%  Similarity=0.390  Sum_probs=40.6

Q ss_pred             CEEEEEecChHHHHHHHHHhh-CCCEEEEE-cCCCCHH--HHHhcCcc------------------c-cChhhhccCCCE
Q psy6348          99 KTLAVLGLGRIGREVALRMQA-FGMKVIGF-DPMVSVE--DAAKLNIA------------------S-LGLEDIWPLADY  155 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~--~a~~~gv~------------------~-~~l~ell~~aDv  155 (333)
                      .+|||.|||+||+.+++.+.. -.++|++. |+.+...  .+.+.++.                  . -++.++..++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            489999999999999998865 34777665 5544332  22333321                  0 144555667777


Q ss_pred             EEEecCC
Q psy6348         156 ITVHTPL  162 (333)
Q Consensus       156 V~l~~P~  162 (333)
                      |+=|+|.
T Consensus        83 ViEcTG~   89 (172)
T d2czca2          83 IVDATPG   89 (172)
T ss_dssp             EEECCST
T ss_pred             EEECCCC
Confidence            7777763

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.03  E-value=0.0039  Score=51.01  Aligned_cols=87  Identities=11%  Similarity=0.120  Sum_probs=58.0

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------Chhhhc------cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------GLEDIW------PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~l~ell------~~aDvV~l~~P~  162 (333)
                      .|++|.|.|. |.+|...++.++.+|++|++.++.. ..+.+++.|...+      ++.+-+      ...|+++-++..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g~  104 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLAG  104 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCCT
T ss_pred             CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEecccc
Confidence            4789999885 9999999999999999999987654 3455666665321      222211      346777776641


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccC
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aR  189 (333)
                        ++    -...++.++++..+|.++.
T Consensus       105 --~~----~~~~~~~l~~~G~~v~~G~  125 (183)
T d1pqwa_         105 --EA----IQRGVQILAPGGRFIELGK  125 (183)
T ss_dssp             --HH----HHHHHHTEEEEEEEEECSC
T ss_pred             --hH----HHHHHHHhcCCCEEEEEcc
Confidence              11    1345566777777777643

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.014  Score=47.49  Aligned_cols=94  Identities=15%  Similarity=0.097  Sum_probs=64.4

Q ss_pred             ccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCC---CHH-------HHHhcCcc--c-cChhhhccCCCEEEEec
Q psy6348          95 ELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMV---SVE-------DAAKLNIA--S-LGLEDIWPLADYITVHT  160 (333)
Q Consensus        95 ~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~~  160 (333)
                      +|.|+||++||=|+ +-.+++..+..||+++..+.|..   ..+       ...+.|..  . .++++.+..+|+|..-.
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            47899999999763 55566666778999999988753   211       12223432  2 37999999999999876


Q ss_pred             CCchh------------hHhhccHHHHhccCCCcEEEEcc
Q psy6348         161 PLIPQ------------TKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       161 P~t~~------------t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .....            ....++.+.++.++++++|..+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl  120 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL  120 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence            53221            01225667788889999999883

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.94  E-value=0.011  Score=47.76  Aligned_cols=88  Identities=11%  Similarity=0.008  Sum_probs=49.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC----CCEEEEEcCCCCHHHHHhcCcc---c--cChhhhccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF----GMKVIGFDPMVSVEDAAKLNIA---S--LGLEDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~----G~~V~~~d~~~~~~~a~~~gv~---~--~~l~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      +||||||. |.+|+++.++|.+.    ..++..+....+....-..+-.   .  ..-.+.++++|++++|+|. ..+..
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~-~~s~~   79 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGG-SYTEK   79 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCH-HHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCc-hHHHH
Confidence            47999998 99999999877532    2566655433221111111111   1  1123557899999999993 33333


Q ss_pred             hccHHHHhccCCCcEEEEccC
Q psy6348         169 LINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aR  189 (333)
                      +. ....+ -..++++|+.|.
T Consensus        80 ~~-~~l~~-~g~~~~VIDlSs   98 (147)
T d1mb4a1          80 VY-PALRQ-AGWKGYWIDAAS   98 (147)
T ss_dssp             HH-HHHHH-TTCCSEEEESSS
T ss_pred             Hh-HHHHH-cCCceEEEeCCc
Confidence            32 22222 233467888754

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=95.91  E-value=0.02  Score=46.80  Aligned_cols=47  Identities=30%  Similarity=0.438  Sum_probs=40.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcc
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      -.|.+|.|+|.|.+|...++.++++|. +|++.|+.. ..+.++++|..
T Consensus        26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~   74 (174)
T d1p0fa2          26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT   74 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc
Confidence            358899999999999999999999996 799999876 45777888864

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.89  E-value=0.0062  Score=48.96  Aligned_cols=62  Identities=15%  Similarity=0.208  Sum_probs=43.5

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHH----hc-------C--ccc----cChhhhccCCCEEEE
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAA----KL-------N--IAS----LGLEDIWPLADYITV  158 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~----~~-------g--v~~----~~l~ell~~aDvV~l  158 (333)
                      .||+|||. |.+|+.+|..+...|.  ++..||.......++    ++       .  ...    .+-.+.+++||+|++
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            47999995 9999999999988885  999999865332211    11       0  111    123467889999999


Q ss_pred             ec
Q psy6348         159 HT  160 (333)
Q Consensus       159 ~~  160 (333)
                      +.
T Consensus        81 tA   82 (145)
T d1hyea1          81 TS   82 (145)
T ss_dssp             CC
T ss_pred             ec
Confidence            83

>d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: Serine metabolism enzymes domain
family: SerA intervening domain-like
domain: D-3-phosphoglycerate dehydrogenase SerA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.89  E-value=0.0021  Score=51.24  Aligned_cols=26  Identities=31%  Similarity=0.544  Sum_probs=22.7

Q ss_pred             cCCCCCchHHHHHHHhHHHHHHhcCC
Q psy6348         285 RNPENTSWISLARSLGKISSQLLQTS  310 (333)
Q Consensus       285 ~~~~~~~~~~l~~~~g~~~~~~~~~~  310 (333)
                      ..++++||+.|||+||++++|+++++
T Consensus         4 ~~~~l~Pyl~LaekLG~~~~ql~~~~   29 (135)
T d1ygya4           4 VNEEVAPWLDLVRKLGVLAGVLSDEL   29 (135)
T ss_dssp             SCTTTTTHHHHHHHHHHHHHHTSSSC
T ss_pred             cccchhhHHHHHHHHHHHHHHHcCCC
Confidence            45679999999999999999998754

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=95.77  E-value=0.022  Score=49.59  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=33.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +|+||++-|.|. +.||+++|++|...|++|+..++..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~   40 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE   40 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999996 6799999999999999999999854

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.76  E-value=0.016  Score=47.42  Aligned_cols=64  Identities=16%  Similarity=0.080  Sum_probs=41.4

Q ss_pred             CEEEEEecChHH--HHHHHHHhh---CC-CEEEEEcCCCCHHHHHh-----------cCcc-----ccChhhhccCCCEE
Q psy6348          99 KTLAVLGLGRIG--REVALRMQA---FG-MKVIGFDPMVSVEDAAK-----------LNIA-----SLGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGlG~IG--~~vA~~l~~---~G-~~V~~~d~~~~~~~a~~-----------~gv~-----~~~l~ell~~aDvV  156 (333)
                      .||.|||.|.+|  ..++..++.   +. -++..+|.....+.++.           .+..     ..+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            489999999876  445544443   22 48999998653322211           1221     12567889999999


Q ss_pred             EEecCC
Q psy6348         157 TVHTPL  162 (333)
Q Consensus       157 ~l~~P~  162 (333)
                      +++...
T Consensus        82 v~ta~~   87 (169)
T d1s6ya1          82 TTQFRV   87 (169)
T ss_dssp             EECCCT
T ss_pred             EEcccc
Confidence            999863

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.75  E-value=0.004  Score=47.54  Aligned_cols=64  Identities=19%  Similarity=0.190  Sum_probs=47.1

Q ss_pred             CCCEEEEEecC----------hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcccc-ChhhhccCCCEEEEecC
Q psy6348          97 YGKTLAVLGLG----------RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASL-GLEDIWPLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~-~l~ell~~aDvV~l~~P  161 (333)
                      ..|+|||.|+=          .-.-.+.+.|...|.+|.+|||+...... ..+.... ++++++..||+|++...
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~-~~~~~~~~~l~~~~~~sDiII~~~~   88 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES-EDQSVLVNDLENFKKQANIIVTNRY   88 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT-TCCSEECCCHHHHHHHCSEEECSSC
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh-ccCCEEEeCHHHHHhhCCEEEEcCC
Confidence            34699999983          35667899999999999999999854221 2234333 79999999998776543

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.75  E-value=0.014  Score=47.44  Aligned_cols=63  Identities=17%  Similarity=0.096  Sum_probs=40.9

Q ss_pred             CEEEEEecChHHHHHHHH--Hhh---C-CCEEEEEcCCCCHHH-HHh-------cCcc---ccChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGLGRIGREVALR--MQA---F-GMKVIGFDPMVSVED-AAK-------LNIA---SLGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~--l~~---~-G~~V~~~d~~~~~~~-a~~-------~gv~---~~~l~ell~~aDvV~l~~P  161 (333)
                      .||.|||.|.+|...+-.  ++.   + +-++..+|....... ..+       ....   ..+.++.+++||+|+++.-
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            479999999999777632  221   2 358999998543211 111       1111   1267889999999999874

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=95.73  E-value=0.022  Score=47.95  Aligned_cols=98  Identities=13%  Similarity=0.207  Sum_probs=75.4

Q ss_pred             HHHHHHhhCCCEEEEEcC-----CCCHHHHHhcCcccc-ChhhhccCCCEEEE-ecCCchhhHhhccHHHHhccCCCcEE
Q psy6348         112 EVALRMQAFGMKVIGFDP-----MVSVEDAAKLNIASL-GLEDIWPLADYITV-HTPLIPQTKNLINAEVLKKCKKGVRV  184 (333)
Q Consensus       112 ~vA~~l~~~G~~V~~~d~-----~~~~~~a~~~gv~~~-~l~ell~~aDvV~l-~~P~t~~t~~li~~~~~~~mk~gail  184 (333)
                      ..++.|...|++|++=.-     ..+.+..++.|++.+ +.++++.++|+|+- ..|...+    .+.+.++.||+|+++
T Consensus        21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l   96 (194)
T d1l7da2          21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL   96 (194)
T ss_dssp             HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence            567889999999997432     235666788898876 56899999998874 4454332    334577889999999


Q ss_pred             EEccCCcccchHhHHhhhhcCCceEEEeccC
Q psy6348         185 VNVARGGIVDENALLDSLKCGHCGGAALDVF  215 (333)
Q Consensus       185 IN~aRg~~vd~~aL~~aL~~g~i~gaalDV~  215 (333)
                      |..-  ......++.++|.+.++...++|..
T Consensus        97 i~~l--~p~~~~~~~~~l~~~~it~~a~e~i  125 (194)
T d1l7da2          97 MCHL--GALTNRPVVEALTKRKITAYAMELM  125 (194)
T ss_dssp             EEEC--CGGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred             EEec--ccccchhHHHHHHhcCceEEeeecc
Confidence            9875  3567888999999999999999885

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=95.72  E-value=0.0081  Score=48.53  Aligned_cols=62  Identities=16%  Similarity=0.254  Sum_probs=47.6

Q ss_pred             CCCEEEEEec---ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEec
Q psy6348          97 YGKTLAVLGL---GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHT  160 (333)
Q Consensus        97 ~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~  160 (333)
                      .|.+|++||=   +++..+++..+..||+++....|..-..  ....+.. .++++.++.+|+|..-.
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~--~~~~~~~~~~~~ea~~~aDviy~~r   67 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD--EENTFGTYVSMDEAVESSDVVMLLR   67 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc--cccceeEEEechhccccCceeeeeE
Confidence            5899999996   6899999999999999999888753111  1122332 48999999999987653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.72  E-value=0.0024  Score=51.92  Aligned_cols=45  Identities=31%  Similarity=0.358  Sum_probs=36.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCc
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNI  141 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv  141 (333)
                      .|.++.|+|. |.+|...++.+++.|. +|++.+++. ..+.++++|.
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga   74 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA   74 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC
T ss_pred             CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC
Confidence            4789999995 9999999999998884 899999876 3355666665

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.66  E-value=0.035  Score=43.98  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=68.6

Q ss_pred             CCCEEEEEec----ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccc-cChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          97 YGKTLAVLGL----GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIAS-LGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        97 ~gktvGIIGl----G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~-~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      .-|+|+|||.    |+.|..+++.|+.+|++|+..+|...    .-.|... .++.++-..-|++++++| .+.+..++.
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~----~i~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~~   92 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYVE   92 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSC-HHHHHHHHH
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc----ccCCCcccccccccCccceEEEEEeC-HHHHHHHHH
Confidence            4689999996    57999999999999999999998642    1235544 389999889999999999 334444443


Q ss_pred             HHHHhccCCCcEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                       +..+ +....+++..+   ..+++ +.+.+++..+
T Consensus        93 -e~~~-~g~k~v~~~~G---~~~ee-~~~~a~~~gi  122 (139)
T d2d59a1          93 -QAIK-KGAKVVWFQYN---TYNRE-ASKKADEAGL  122 (139)
T ss_dssp             -HHHH-HTCSEEEECTT---CCCHH-HHHHHHHTTC
T ss_pred             -HHHH-hCCCEEEEecc---ccCHH-HHHHHHHCCC
Confidence             3332 45556776554   23443 4444444444

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.021  Score=49.39  Aligned_cols=38  Identities=24%  Similarity=0.385  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+|.||++-|.|.+. ||+++|+.+...|++|+.+|+..
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~   41 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK   41 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            358999999999965 99999999999999999999954

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.58  E-value=0.018  Score=46.14  Aligned_cols=66  Identities=18%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             cCCCEEEEEec---ChHHHHHHHHHhhCCCEEEEEcCCC---CHH---HHHhcCcc---ccChhhhccCCCEEEEecC
Q psy6348          96 LYGKTLAVLGL---GRIGREVALRMQAFGMKVIGFDPMV---SVE---DAAKLNIA---SLGLEDIWPLADYITVHTP  161 (333)
Q Consensus        96 l~gktvGIIGl---G~IG~~vA~~l~~~G~~V~~~d~~~---~~~---~a~~~gv~---~~~l~ell~~aDvV~l~~P  161 (333)
                      |.|+||++||=   +++..+++..+..||+++..+.|..   ..+   ..++.+..   ..++++.++++|+|....-
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~   79 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI   79 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence            68999999998   6899999999999999999998753   221   22333332   2389999999999887654

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.54  E-value=0.025  Score=46.86  Aligned_cols=94  Identities=14%  Similarity=0.064  Sum_probs=64.4

Q ss_pred             ccCCCEEEEEec--ChHHHHHHHHHhhCCCEEEEEcCCC---CHHH-------HHhcCcc--c-cChhhhccCCCEEEEe
Q psy6348          95 ELYGKTLAVLGL--GRIGREVALRMQAFGMKVIGFDPMV---SVED-------AAKLNIA--S-LGLEDIWPLADYITVH  159 (333)
Q Consensus        95 ~l~gktvGIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~---~~~~-------a~~~gv~--~-~~l~ell~~aDvV~l~  159 (333)
                      .|.|.||++||=  -++..+++..+..||+++....|..   ..+.       ....|..  . .++++.++++|+|..-
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            478999999994  4899999999999999999998843   2221       1223332  2 3789999999999875


Q ss_pred             cCCch----h---------hHhhc-cHHHHhccCCCcEEEEcc
Q psy6348         160 TPLIP----Q---------TKNLI-NAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       160 ~P~t~----~---------t~~li-~~~~~~~mk~gailIN~a  188 (333)
                      .=...    .         ....+ .......+|+++++..+.
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            42111    0         00122 233445678999999985

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.53  E-value=0.022  Score=46.21  Aligned_cols=46  Identities=33%  Similarity=0.503  Sum_probs=38.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|.+|.|+|.|-+|...+..++.+|. +|++.|+.. ..+.++++|..
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~   75 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT   75 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe
Confidence            58899999999999999999999985 899999877 44666777753

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.025  Score=49.05  Aligned_cols=39  Identities=28%  Similarity=0.317  Sum_probs=35.1

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          93 GTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        93 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |..|.||++-|.|. +.||+++|++|...|++|+..|+..
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE   40 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46789999999997 7899999999999999999999853

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.51  E-value=0.015  Score=46.76  Aligned_cols=88  Identities=13%  Similarity=0.079  Sum_probs=49.5

Q ss_pred             CEEEEEec-ChHHHHHHHHHhh----CCCEEEEEcCCCCHHH--H-HhcCccccCh--hhhccCCCEEEEecCCchhhHh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQA----FGMKVIGFDPMVSVED--A-AKLNIASLGL--EDIWPLADYITVHTPLIPQTKN  168 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~----~G~~V~~~d~~~~~~~--a-~~~gv~~~~l--~ell~~aDvV~l~~P~t~~t~~  168 (333)
                      |+|||||. |.+|+.+.++|..    .-.++..+....+...  . ........++  .+.++++|++++++|. +..+.
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~-~~s~~   80 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGG-DYTNE   80 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCH-HHHHH
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCc-hHHHH
Confidence            68999998 9999999986643    2236666654332211  0 1111111122  2357899999999983 22222


Q ss_pred             hccHHHHhccCCCcEEEEccC
Q psy6348         169 LINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aR  189 (333)
                      +  ...+..-..+.++|+.|.
T Consensus        81 ~--~~~~~~~g~~~~VID~Ss   99 (146)
T d1t4ba1          81 I--YPKLRESGWQGYWIDAAS   99 (146)
T ss_dssp             H--HHHHHHTTCCCEEEECSS
T ss_pred             h--hHHHHhcCCCeecccCCc
Confidence            2  222222334467888764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.35  E-value=0.0089  Score=50.14  Aligned_cols=34  Identities=29%  Similarity=0.486  Sum_probs=31.7

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ||||.|||.|.-|...|..|+..|++|.+++...
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            7999999999999999999999999999998643

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.28  E-value=0.016  Score=47.55  Aligned_cols=64  Identities=19%  Similarity=0.225  Sum_probs=42.1

Q ss_pred             CCEEEEEecChHHHHHHH---HHh--hC-CCEEEEEcCCCCHHHH---------HhcCc--cc---cChhhhccCCCEEE
Q psy6348          98 GKTLAVLGLGRIGREVAL---RMQ--AF-GMKVIGFDPMVSVEDA---------AKLNI--AS---LGLEDIWPLADYIT  157 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~---~l~--~~-G~~V~~~d~~~~~~~a---------~~~gv--~~---~~l~ell~~aDvV~  157 (333)
                      +.||+|||.|.+|...+.   .++  .+ +-++..||........         ...+.  +.   .+.+|.++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            469999999999976432   332  23 4599999986422111         11121  11   26889999999999


Q ss_pred             EecC
Q psy6348         158 VHTP  161 (333)
Q Consensus       158 l~~P  161 (333)
                      +..-
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            8754

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=95.28  E-value=0.029  Score=48.50  Aligned_cols=84  Identities=18%  Similarity=0.057  Sum_probs=53.7

Q ss_pred             cCCCEEEEEec-C--hHHHHHHHHHhhCCCEEEEEcCCCCHH-HHHhcCccccChhhhccCCCEEEEecCCchhhHhhcc
Q psy6348          96 LYGKTLAVLGL-G--RIGREVALRMQAFGMKVIGFDPMVSVE-DAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus        96 l~gktvGIIGl-G--~IG~~vA~~l~~~G~~V~~~d~~~~~~-~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      |+||++-|.|. |  -||.++|+.|...|++|+..++....+ ..+       .+.+....+.+...-+....+...++.
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~~~~~~~-------~l~~~~~~~~~~~~d~~~~~~~~~~~~   75 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNESLEKRVR-------PIAQELNSPYVYELDVSKEEHFKSLYN   75 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTTTHHHHH-------HHHHHTTCCCEEECCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH-------HHHhhCCceeEeeecccchhhHHHHHH
Confidence            78999999997 4  499999999999999999999864322 221       233334455655555554445555553


Q ss_pred             HHHHhccCCCcEEEEc
Q psy6348         172 AEVLKKCKKGVRVVNV  187 (333)
Q Consensus       172 ~~~~~~mk~gailIN~  187 (333)
                       +..+.+.+=-++||.
T Consensus        76 -~~~~~~g~id~lV~n   90 (274)
T d2pd4a1          76 -SVKKDLGSLDFIVHS   90 (274)
T ss_dssp             -HHHHHTSCEEEEEEC
T ss_pred             -HHHHHcCCCCeEEee
Confidence             333444443445544

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.028  Score=48.02  Aligned_cols=38  Identities=18%  Similarity=0.193  Sum_probs=34.3

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +.|+||++-|.|. +.||+++|++|...|++|++.|+..
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            3689999999998 5599999999999999999999865

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=95.17  E-value=0.031  Score=48.00  Aligned_cols=82  Identities=23%  Similarity=0.224  Sum_probs=51.4

Q ss_pred             cCCCEEEEEecCh-HHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecC--CchhhHhhccH
Q psy6348          96 LYGKTLAVLGLGR-IGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTP--LIPQTKNLINA  172 (333)
Q Consensus        96 l~gktvGIIGlG~-IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P--~t~~t~~li~~  172 (333)
                      |.||++-|.|.++ ||+++|+.|...|++|+..++..  +..++.      .+++  +.+++.+.+=  ..++.+.++. 
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~--~~~~~~------~~~~--~~~~~~~~~Dls~~~~i~~~~~-   71 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE--RLLAEA------VAAL--EAEAIAVVADVSDPKAVEAVFA-   71 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHH------HHTC--CSSEEEEECCTTSHHHHHHHHH-
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHH------HHHc--CCceEEEEecCCCHHHHHHHHH-
Confidence            7899999999865 99999999999999999998854  222111      1111  2344444443  2334455553 


Q ss_pred             HHHhccCCCcEEEEcc
Q psy6348         173 EVLKKCKKGVRVVNVA  188 (333)
Q Consensus       173 ~~~~~mk~gailIN~a  188 (333)
                      +..+.+.+=-+|||.+
T Consensus        72 ~i~~~~g~iDiLinnA   87 (241)
T d2a4ka1          72 EALEEFGRLHGVAHFA   87 (241)
T ss_dssp             HHHHHHSCCCEEEEGG
T ss_pred             HHHHHhCCccEecccc
Confidence            2333344445677765

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.018  Score=46.08  Aligned_cols=92  Identities=20%  Similarity=0.220  Sum_probs=55.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHh---hCCCEEEEEcCCCCH-HHHHhc-Cc------c---ccChhhhccCCCEEEEecC--
Q psy6348          99 KTLAVLGL-GRIGREVALRMQ---AFGMKVIGFDPMVSV-EDAAKL-NI------A---SLGLEDIWPLADYITVHTP--  161 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~---~~G~~V~~~d~~~~~-~~a~~~-gv------~---~~~l~ell~~aDvV~l~~P--  161 (333)
                      .||+|||. |.+|+.+|-.+.   .++-++..||..... ..+.++ ..      .   ..+..+.+++||+|+++.-  
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~   80 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence            48999995 999999998764   356799999975422 111121 11      0   1123456889999999863  


Q ss_pred             Cchh-h--------Hhhcc--HHHHhccCCCcEEEEccCC
Q psy6348         162 LIPQ-T--------KNLIN--AEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       162 ~t~~-t--------~~li~--~~~~~~mk~gailIN~aRg  190 (333)
                      ..+. +        ..++.  .+.+....|++++|.++..
T Consensus        81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence            2221 1        11111  1233445678888888553

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=95.11  E-value=0.013  Score=50.22  Aligned_cols=65  Identities=17%  Similarity=0.297  Sum_probs=43.7

Q ss_pred             CCEEEEEecChH----HHHHHHHHhhC--CCEEEE-EcCCCC--HHHHHhcCcc----ccChhhhcc--CCCEEEEecCC
Q psy6348          98 GKTLAVLGLGRI----GREVALRMQAF--GMKVIG-FDPMVS--VEDAAKLNIA----SLGLEDIWP--LADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIGlG~I----G~~vA~~l~~~--G~~V~~-~d~~~~--~~~a~~~gv~----~~~l~ell~--~aDvV~l~~P~  162 (333)
                      -.+|||||+|.+    ++.....++..  ++++++ +|+...  .+.+++++..    +.++++++.  +-|+|++++|.
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~   95 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKV   95 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCH
T ss_pred             CeEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCC
Confidence            358999999975    44444455543  678774 788652  2334555543    348899885  57899999983

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.11  E-value=0.013  Score=45.23  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=30.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |++.|||.|.||.++|..+..+|++|..+.+..
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEecc
Confidence            799999999999999999999999999987643

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.10  E-value=0.0074  Score=49.07  Aligned_cols=35  Identities=23%  Similarity=0.375  Sum_probs=31.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCE-EEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMK-VIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~-V~~~d~~~  131 (333)
                      .+|||.|||.|..|...|..|+.+|++ |.++++..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~   38 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE   38 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence            589999999999999999999999995 99998755

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=95.07  E-value=0.014  Score=44.82  Aligned_cols=34  Identities=21%  Similarity=0.317  Sum_probs=31.2

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+++.|||.|.+|-++|..++.+|.+|..+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            4799999999999999999999999999998643

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=95.01  E-value=0.035  Score=48.16  Aligned_cols=37  Identities=32%  Similarity=0.406  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +|+||++-|.|.+ .||+++|++|...|++|+..|+..
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD   39 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999985 699999999999999999999854

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.00  E-value=0.014  Score=44.46  Aligned_cols=34  Identities=35%  Similarity=0.447  Sum_probs=30.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+++.|||.|.+|.++|..+..+|.+|..+.+..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEecc
Confidence            3799999999999999999999999999987543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.016  Score=44.20  Aligned_cols=33  Identities=30%  Similarity=0.434  Sum_probs=30.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |++.|||.|.+|.++|..++.+|.+|..+++..
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence            789999999999999999999999999998754

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.04  Score=47.83  Aligned_cols=41  Identities=29%  Similarity=0.422  Sum_probs=35.5

Q ss_pred             CCccccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          91 YTGTELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        91 ~~g~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |....|+||++-|.|.+ -||+++|+.|...|++|+..++..
T Consensus         7 f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~   48 (269)
T d1xu9a_           7 FRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK   48 (269)
T ss_dssp             CCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            44445999999999985 499999999999999999999854

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.77  E-value=0.046  Score=47.12  Aligned_cols=37  Identities=32%  Similarity=0.217  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|-|. +.||+++|+.|...|++|++.|+..
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~   40 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD   40 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999998 5699999999999999999999854

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.043  Score=47.16  Aligned_cols=37  Identities=38%  Similarity=0.447  Sum_probs=32.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|-|. +.||+++|++|...|++|+.+|+..
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            378999999987 5699999999999999999999853

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.71  E-value=0.023  Score=43.11  Aligned_cols=36  Identities=19%  Similarity=0.162  Sum_probs=32.5

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..+|++.|||.|.+|.++|..|+.+|.+|..+.+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~   55 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE   55 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccc
Confidence            357999999999999999999999999999987643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.64  E-value=0.02  Score=44.16  Aligned_cols=33  Identities=24%  Similarity=0.178  Sum_probs=30.8

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |++.|||.|.||-++|..++.+|.+|..+.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            799999999999999999999999999998753

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.62  E-value=0.069  Score=45.67  Aligned_cols=168  Identities=15%  Similarity=0.107  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC--C--
Q psy6348          58 SACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV--S--  132 (333)
Q Consensus        58 avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~--~--  132 (333)
                      -+|--+++-+|+..|-                  .|..|...++.|.|.|.-|..+|+.+...|. +++.+|+.-  .  
T Consensus         4 GTaaV~LAgll~a~~~------------------~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~   65 (222)
T d1vl6a1           4 GTAVVVSAAFLNALKL------------------TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEN   65 (222)
T ss_dssp             HHHHHHHHHHHHHHHH------------------HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTT
T ss_pred             hHHHHHHHHHHHHHHH------------------hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcC
Confidence            3555677778877762                  3567889999999999999999999987776 688888751  0  


Q ss_pred             -------HH---HHHhcCc--cccChhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEEEccCCcccchHhHHh
Q psy6348         133 -------VE---DAAKLNI--ASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENALLD  200 (333)
Q Consensus       133 -------~~---~a~~~gv--~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL~~  200 (333)
                             ..   ..+....  ...++.++++.++++....     +.+++.++.+..|.+..++.=.|....--|.+  .
T Consensus        66 r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~~--~  138 (222)
T d1vl6a1          66 DPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPVPEIDPE--L  138 (222)
T ss_dssp             SGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSSCSSCHH--H
T ss_pred             cccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCccchhhh--h
Confidence                   10   0111111  1236788999999877653     57888899999999999999999877655554  3


Q ss_pred             hhhcCCceEEEeccCCCCCCCCccchhhcCCCcEEEccCCCC-----CcHHHHHHHHHHHHHHHHHh
Q psy6348         201 SLKCGHCGGAALDVFCEEPPKSEQTFELIKHPKVIVTPHLGA-----STKEAQIRVAVEIAEQFIAL  262 (333)
Q Consensus       201 aL~~g~i~gaalDV~~~EP~~~~~~~~L~~~pnvi~TPHi~~-----~t~ea~~~~~~~~~~~i~~~  262 (333)
                      +-..|+..-|.     .-|..+      -+.-|+++-|=+|-     .+. --+.|-..+++.+.++
T Consensus       139 a~~~G~ai~At-----Gsp~~p------~Q~NN~yiFPGiglGal~~~ar-itd~m~~aAA~alA~~  193 (222)
T d1vl6a1         139 AREAGAFIVAT-----GRSDHP------NQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAIARS  193 (222)
T ss_dssp             HHHTTCSEEEE-----SCTTSS------SBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHT
T ss_pred             heeccceEEec-----CCCCCC------ccCcceeecchHHHHHHHhccc-cchHHHHHHHHHHHhc
Confidence            34456654222     112111      14567777775531     111 2234555556666554

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.59  E-value=0.081  Score=45.64  Aligned_cols=89  Identities=20%  Similarity=0.190  Sum_probs=54.8

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCc--hhhHhhcc
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLI--PQTKNLIN  171 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t--~~t~~li~  171 (333)
                      .|+||++-|.|. +.||+++|++|...|++|+++++..  +..++.-   ..+.+.-....++.+.+=++  ++.+.+++
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~--~~l~~~~---~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~   81 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV--GNIEELA---AECKSAGYPGTLIPYRCDLSNEEDILSMFS   81 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHHH---HHHHHTTCSSEEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHHH---HHHHhcCCCceEEEEEccCCCHHHHHHHHH
Confidence            489999999998 6799999999999999999999853  2222110   01222222346666665433  34455554


Q ss_pred             HHHHhccCCCcEEEEccC
Q psy6348         172 AEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aR  189 (333)
                      . ..+...+=-+|||.+-
T Consensus        82 ~-~~~~~g~iD~lVnnAg   98 (257)
T d1xg5a_          82 A-IRSQHSGVDICINNAG   98 (257)
T ss_dssp             H-HHHHHCCCSEEEECCC
T ss_pred             H-HHHhcCCCCEEEeccc
Confidence            2 3333332236777764

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.57  E-value=0.051  Score=43.67  Aligned_cols=92  Identities=16%  Similarity=0.209  Sum_probs=60.1

Q ss_pred             cCCCEEEEEec---ChHHHHHHHHHhhCC-CEEEEEcCCC---CH---HHHHhcCccc---cChhhhccCCCEEEEecCC
Q psy6348          96 LYGKTLAVLGL---GRIGREVALRMQAFG-MKVIGFDPMV---SV---EDAAKLNIAS---LGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        96 l~gktvGIIGl---G~IG~~vA~~l~~~G-~~V~~~d~~~---~~---~~a~~~gv~~---~~l~ell~~aDvV~l~~P~  162 (333)
                      +.|.+|++||=   |++..+++..+..+| +.++.+.|..   ..   +.++..|...   .+++++++++|+|......
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            67999999996   779999999999996 5566666532   11   2234444432   3789999999999865332


Q ss_pred             chh----------hHhhccHHHHhccCCCcEEEEc
Q psy6348         163 IPQ----------TKNLINAEVLKKCKKGVRVVNV  187 (333)
Q Consensus       163 t~~----------t~~li~~~~~~~mk~gailIN~  187 (333)
                      ...          ....++.+.++.+++++++..|
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHc  116 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHP  116 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECC
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecC
Confidence            111          0111244556666777777776

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=94.56  E-value=0.069  Score=45.84  Aligned_cols=39  Identities=26%  Similarity=0.261  Sum_probs=34.4

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV  133 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~  133 (333)
                      .|+||++-|.|. +.||+++|+.|...|++|++.|+....
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            489999999998 469999999999999999999986543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.55  E-value=0.047  Score=46.84  Aligned_cols=38  Identities=24%  Similarity=0.332  Sum_probs=33.5

Q ss_pred             cccCCCEEEEEecC---hHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGLG---RIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+|+||++-|.|.+   .||+++|++|...|++|+..++..
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~   44 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE   44 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence            46899999999974   499999999999999999888753

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=94.53  E-value=0.048  Score=47.67  Aligned_cols=37  Identities=30%  Similarity=0.398  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|-|. +.||+++|+.|...|++|+..|+..
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA   39 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999997 6899999999999999999999853

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.11  Score=44.53  Aligned_cols=37  Identities=27%  Similarity=0.387  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|.||++-|.|. +.||+++|++|...|++|++.|+..
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            589999999998 5699999999999999999999853

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=94.42  E-value=0.045  Score=47.42  Aligned_cols=37  Identities=32%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|.|. +.||+++|+.|...|++|+..|+..
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999998 4599999999999999999999853

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.41  E-value=0.026  Score=43.46  Aligned_cols=35  Identities=26%  Similarity=0.290  Sum_probs=31.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .++++.|||.|.+|-++|..|+..|.+|..+++..
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~   63 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQP   63 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence            36899999999999999999999999999998654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.38  E-value=0.021  Score=45.08  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=31.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~  131 (333)
                      .||+|.|||.|.+|-++|..|+.+|  .+|+.+++..
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            4899999999999999999999877  5899988765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.36  E-value=0.027  Score=43.36  Aligned_cols=34  Identities=32%  Similarity=0.355  Sum_probs=31.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      .+|++.|||.|.+|.++|..++.+|.+|..+++.
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~   62 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL   62 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEec
Confidence            5789999999999999999999999999998764

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.021  Score=46.20  Aligned_cols=44  Identities=20%  Similarity=0.228  Sum_probs=34.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC-HHHHHhcC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS-VEDAAKLN  140 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~-~~~a~~~g  140 (333)
                      .|++|.|.|. |.+|....+.++.+|++|++.+++.. .+.++++|
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lG   73 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAG   73 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHT
T ss_pred             CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcC
Confidence            4789999955 55999999999999999999988652 34445544

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.25  E-value=0.018  Score=46.38  Aligned_cols=87  Identities=20%  Similarity=0.203  Sum_probs=52.7

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCC---EEEEEcCCCCHHHHHhcCc----cccChhhhccCCCEEEEecCCchhhHhh
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGM---KVIGFDPMVSVEDAAKLNI----ASLGLEDIWPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~---~V~~~d~~~~~~~a~~~gv----~~~~l~ell~~aDvV~l~~P~t~~t~~l  169 (333)
                      |-+|||||. |-+|+++.+.|....+   ++..+....+.........    .....++...+.|++++++|. ..+...
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~-~~s~~~   79 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGS-STSAKY   79 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCH-HHHHHH
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCc-cchhhH
Confidence            458999999 9999999999976643   4444433211110000000    112456677899999999983 222222


Q ss_pred             ccHHHHhccCCCcEEEEccC
Q psy6348         170 INAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~aR  189 (333)
                          .....+.|..+|+.|.
T Consensus        80 ----~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          80 ----APYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ----HHHHHHTTCEEEECSS
T ss_pred             ----HhhhccccceehhcCh
Confidence                2233568999999854

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.24  E-value=0.032  Score=45.54  Aligned_cols=88  Identities=18%  Similarity=0.132  Sum_probs=63.7

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc------C-hhhhc-----cCCCEEEEecCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL------G-LEDIW-----PLADYITVHTPL  162 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~------~-l~ell-----~~aDvV~l~~P~  162 (333)
                      .|.+|.|.|. |.+|+..++.++..|++|++.++.. ..+..++.|...+      + .++++     ...|+|+-++. 
T Consensus        29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG-  107 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG-  107 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence            5889999998 7799999999999999999998765 3456677775421      1 12222     45899988875 


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEccCC
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVARG  190 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~aRg  190 (333)
                       .+    .-.+.++.++++..++.++..
T Consensus       108 -~~----~~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 -GE----FLNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             -HH----HHHHHGGGEEEEEEEEECCCG
T ss_pred             -ch----hhhhhhhhccCCCeEEeecce
Confidence             22    125677889999999988543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.23  E-value=0.12  Score=44.18  Aligned_cols=37  Identities=27%  Similarity=0.360  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +|.||++-|.|. +.||+++|++|...|++|++.|+..
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN   39 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            589999999998 5699999999999999999999853

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.23  E-value=0.084  Score=41.06  Aligned_cols=73  Identities=14%  Similarity=0.113  Sum_probs=46.1

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEE-EcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCchhhHhhccHHHHh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIG-FDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLIPQTKNLINAEVLK  176 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~-~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~  176 (333)
                      .+|||+|+ |+||+.+++.+...|+++.+ +|+.               ..+.+.++|+|+=-.. .+.+...+..    
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~~id~~---------------~~~~~~~~DVvIDFS~-p~~~~~~l~~----   60 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVLKVDVN---------------GVEELDSPDVVIDFSS-PEALPKTVDL----   60 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEETT---------------EEEECSCCSEEEECSC-GGGHHHHHHH----
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEEEECCC---------------cHHHhccCCEEEEecC-HHHHHHHHHH----
Confidence            47999997 99999999999999998765 3432               2344567888775442 2233333211    


Q ss_pred             ccCCCcEEEEccCCc
Q psy6348         177 KCKKGVRVVNVARGG  191 (333)
Q Consensus       177 ~mk~gailIN~aRg~  191 (333)
                      .++.+.-+|-.++|-
T Consensus        61 ~~~~~~p~ViGTTG~   75 (128)
T d1vm6a3          61 CKKYRAGLVLGTTAL   75 (128)
T ss_dssp             HHHHTCEEEECCCSC
T ss_pred             HHhcCCCEEEEcCCC
Confidence            124455566666663

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=94.21  E-value=0.052  Score=47.00  Aligned_cols=37  Identities=24%  Similarity=0.245  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|.||++-|.|.+ .||+++|++|...|++|+..|+..
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   42 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ   42 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999985 599999999999999999999853

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=94.20  E-value=0.19  Score=40.05  Aligned_cols=46  Identities=28%  Similarity=0.429  Sum_probs=38.5

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|.+|.|+|.|.+|...+..++.+|. +|++.|+.. ..+.++++|..
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd   75 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGAT   75 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCC
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCc
Confidence            57899999999999999999988776 799999877 45667788753

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.20  E-value=0.25  Score=39.22  Aligned_cols=46  Identities=28%  Similarity=0.452  Sum_probs=38.3

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcc
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIA  142 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~  142 (333)
                      .|.+|.|+|.|-+|...++.++.+|. +|++.|+.. ..+.++++|..
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~   75 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGAT   75 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred             CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCc
Confidence            57899999999999999999999996 677788766 45677888854

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=94.19  E-value=0.062  Score=46.05  Aligned_cols=37  Identities=22%  Similarity=0.265  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|.|. +.||+++|+.|...|++|+..|+..
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~   39 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE   39 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999997 5699999999999999999999854

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.16  E-value=0.018  Score=44.49  Aligned_cols=32  Identities=19%  Similarity=0.162  Sum_probs=29.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      +++.|||.|.||.++|..++.+|.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            68999999999999999999999999988653

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.15  E-value=0.028  Score=44.71  Aligned_cols=86  Identities=9%  Similarity=0.060  Sum_probs=50.7

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC---CCEEEEEcCCCCHHHHHhcC---ccccC-hhhhccCCCEEEEecCCchhhHhhc
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF---GMKVIGFDPMVSVEDAAKLN---IASLG-LEDIWPLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~---G~~V~~~d~~~~~~~a~~~g---v~~~~-l~ell~~aDvV~l~~P~t~~t~~li  170 (333)
                      .+|||||. |.+|+++.+.|...   ..++.......+....-...   ....+ .++.+.++|++++++|. .....+.
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~-~~s~~~~   81 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAA-EVSRAHA   81 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCH-HHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCc-chhhhhc
Confidence            57999998 99999999999643   34565543322211100011   11112 23557889999999983 2222222


Q ss_pred             cHHHHhccCCCcEEEEccC
Q psy6348         171 NAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       171 ~~~~~~~mk~gailIN~aR  189 (333)
                       ..   ..+.|..+||.+.
T Consensus        82 -~~---~~~~g~~VID~Ss   96 (144)
T d2hjsa1          82 -ER---ARAAGCSVIDLSG   96 (144)
T ss_dssp             -HH---HHHTTCEEEETTC
T ss_pred             -cc---cccCCceEEeech
Confidence             22   2468899998754

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.08  E-value=0.03  Score=42.82  Aligned_cols=33  Identities=30%  Similarity=0.450  Sum_probs=30.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      .+++.|||.|.||-++|..++.+|.+|..+.+.
T Consensus        22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~   54 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM   54 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCeEEEECCChHHHHHHHHHHHcCCceEEEEee
Confidence            489999999999999999999999999988643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.06  E-value=0.058  Score=46.57  Aligned_cols=37  Identities=32%  Similarity=0.273  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|.|. +.||+++|+.|...|++|++.|+..
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL   39 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999998 6799999999999999999999853

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.03  Score=46.27  Aligned_cols=38  Identities=34%  Similarity=0.421  Sum_probs=34.5

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ....+|+|.|||.|..|.+.|..|+..|++|..|+...
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~   76 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS   76 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence            34568999999999999999999999999999998754

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.99  E-value=0.039  Score=42.80  Aligned_cols=70  Identities=16%  Similarity=0.123  Sum_probs=43.4

Q ss_pred             EEEEEecChHHHHHHHHHh-hCCCEEEEE-cCCCCHHHHHhcCcccc---Chhhhc-cCCCEEEEecCCchhhHhhc
Q psy6348         100 TLAVLGLGRIGREVALRMQ-AFGMKVIGF-DPMVSVEDAAKLNIASL---GLEDIW-PLADYITVHTPLIPQTKNLI  170 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~-~~G~~V~~~-d~~~~~~~a~~~gv~~~---~l~ell-~~aDvV~l~~P~t~~t~~li  170 (333)
                      ++.|+|+|.+|+.+++.+. .-|++++++ |..++..-..-.|+...   .++++. +..++.++++|. ...+.++
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~~-~~~~~I~   80 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR-EAAQKAA   80 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH-HHHHHHH
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCCH-HHHHHHH
Confidence            7999999999999998664 458898886 54433221112355443   344444 346778888873 3334443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=93.94  E-value=0.06  Score=46.48  Aligned_cols=37  Identities=32%  Similarity=0.214  Sum_probs=33.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|.|. +-||+++|++|...|++|+..|+..
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~   40 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE   40 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999997 4699999999999999999999853

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.93  E-value=0.037  Score=42.34  Aligned_cols=34  Identities=24%  Similarity=0.218  Sum_probs=31.3

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ++++.|||.|.+|-++|..|+.+|.+|..+++..
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   65 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA   65 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence            5799999999999999999999999999998754

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.90  E-value=0.078  Score=45.01  Aligned_cols=44  Identities=25%  Similarity=0.143  Sum_probs=37.0

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCc
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNI  141 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv  141 (333)
                      |+||++-|.|. +.||+++|+.|...|++|++.|+.  .+..++.+.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~--~~~l~~~~~   46 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN--EELLKRSGH   46 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHTCS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC--HHHHHhcCC
Confidence            78999999998 569999999999999999999984  455555544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.86  E-value=0.021  Score=44.00  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=31.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+++.|||.|.||-++|..++.+|++|....+..
T Consensus        25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcc
Confidence            4799999999999999999999999999987543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=93.77  E-value=0.2  Score=43.09  Aligned_cols=37  Identities=30%  Similarity=0.312  Sum_probs=33.2

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|.|. +.||+++|++|...|++|+..|+..
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   40 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIAD   40 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999997 5699999999999999999999853

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.76  E-value=0.033  Score=46.35  Aligned_cols=34  Identities=32%  Similarity=0.330  Sum_probs=31.1

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      -|+|.|||.|-.|...|..|+..|++|.++|+..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            3689999999999999999999999999999753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.74  E-value=0.035  Score=46.20  Aligned_cols=65  Identities=23%  Similarity=0.198  Sum_probs=47.9

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHHHHhcCcccc------Ch----hhhc--cCCCEEEEecC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVEDAAKLNIASL------GL----EDIW--PLADYITVHTP  161 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~a~~~gv~~~------~l----~ell--~~aDvV~l~~P  161 (333)
                      .|.+|.|+|.|.+|...+..++.+|. +|++.|+.. ..+.++++|...+      ++    .++.  ..+|+++-++.
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            48899999999999999999999888 899999876 3466778876432      11    1222  24788887764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.74  E-value=0.086  Score=42.92  Aligned_cols=63  Identities=14%  Similarity=0.107  Sum_probs=40.2

Q ss_pred             CEEEEEecChHHHHHH--HHHhh-C---CCEEEEEcCCCCHHH--H-------HhcCc--c---ccChhhhccCCCEEEE
Q psy6348          99 KTLAVLGLGRIGREVA--LRMQA-F---GMKVIGFDPMVSVED--A-------AKLNI--A---SLGLEDIWPLADYITV  158 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA--~~l~~-~---G~~V~~~d~~~~~~~--a-------~~~gv--~---~~~l~ell~~aDvV~l  158 (333)
                      -||.|||.|.+|...+  ..++. .   +-++..+|.......  +       ...+.  .   ..+..|.++.||+|++
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvi   83 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMA   83 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEE
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEE
Confidence            4899999999886533  33332 2   238999998652211  1       11122  1   1267899999999999


Q ss_pred             ecC
Q psy6348         159 HTP  161 (333)
Q Consensus       159 ~~P  161 (333)
                      +.-
T Consensus        84 tag   86 (167)
T d1u8xx1          84 HIR   86 (167)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            974

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=93.73  E-value=0.052  Score=46.88  Aligned_cols=39  Identities=23%  Similarity=0.200  Sum_probs=34.7

Q ss_pred             cccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCC
Q psy6348          94 TELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVS  132 (333)
Q Consensus        94 ~~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~  132 (333)
                      .++.||++-|.|.+ .||+++|++|...|++|+..|+...
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   44 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAA   44 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            46899999999985 4999999999999999999998763

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.70  E-value=0.045  Score=42.62  Aligned_cols=35  Identities=34%  Similarity=0.352  Sum_probs=32.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .++++.|||.|.+|-++|..++..|.+|..+++..
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~   68 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA   68 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence            47899999999999999999999999999998653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.66  E-value=0.041  Score=44.93  Aligned_cols=63  Identities=17%  Similarity=0.147  Sum_probs=42.0

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCCCE--EEEEcCCCCHHHHHhcCccc--------cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFGMK--VIGFDPMVSVEDAAKLNIAS--------LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G~~--V~~~d~~~~~~~a~~~gv~~--------~~l~ell~~aDvV~l~~P  161 (333)
                      +||.|.| .|.||+.+++.|...|.+  |+...|..+.......+++.        .++.++++.+|.|+.+..
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~   77 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS   77 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence            6999999 599999999999988865  55555543221111223321        145677889999887654

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.65  E-value=0.086  Score=44.03  Aligned_cols=95  Identities=11%  Similarity=0.066  Sum_probs=70.3

Q ss_pred             HHHHHHhhCCCEEEEEcC-----CCCHHHHHhcCccccC-hhhhccCCCEEEEecCCchhhHhhccHHHHhccCCCcEEE
Q psy6348         112 EVALRMQAFGMKVIGFDP-----MVSVEDAAKLNIASLG-LEDIWPLADYITVHTPLIPQTKNLINAEVLKKCKKGVRVV  185 (333)
Q Consensus       112 ~vA~~l~~~G~~V~~~d~-----~~~~~~a~~~gv~~~~-l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk~gailI  185 (333)
                      ..+++|...|++|++=.-     ..+.+...+.|.+.++ .+++. ++|+|+-.-|.++        ++++.||+|.++|
T Consensus        21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~~--------~e~~~lk~~~~li   91 (193)
T d1pjca2          21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPLP--------AEYDLMQKDQLLF   91 (193)
T ss_dssp             HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCCG--------GGGGGCCTTCEEE
T ss_pred             HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCCH--------HHHHhhhcCceEE
Confidence            567788899999997532     2355666777888774 45655 6898876554333        4678899999999


Q ss_pred             EccCCcccchHhHHhhhhcCCceEEEeccCCC
Q psy6348         186 NVARGGIVDENALLDSLKCGHCGGAALDVFCE  217 (333)
Q Consensus       186 N~aRg~~vd~~aL~~aL~~g~i~gaalDV~~~  217 (333)
                      -.-.  .....++.++|.+.++...++|....
T Consensus        92 ~~l~--p~~~~ell~~l~~~~it~~s~E~ipr  121 (193)
T d1pjca2          92 TYLH--LAAARELTEQLMRVGLTAIAYETVEL  121 (193)
T ss_dssp             ECCC--GGGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred             EecC--cccchHHHHHHHHcCCEEEEeeeccc
Confidence            8754  45567899999999999999988544

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.053  Score=50.77  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=58.2

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC-CHHH-------------------H----Hhc--Ccc--cc--
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV-SVED-------------------A----AKL--NIA--SL--  144 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~-~~~~-------------------a----~~~--gv~--~~--  144 (333)
                      |.+++|.|||+|.+|..+++.|...|. ++..+|... ....                   +    ++.  .++  ..  
T Consensus        35 l~~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~~~  114 (426)
T d1yovb1          35 LDTCKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPHFN  114 (426)
T ss_dssp             HHHCCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEECS
T ss_pred             HhcCeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEeeec
Confidence            678999999999999999999998888 788887532 1100                   0    111  111  10  


Q ss_pred             ----ChhhhccCCCEEEEecCCchhhHhhccHHHHhccC
Q psy6348         145 ----GLEDIWPLADYITVHTPLIPQTKNLINAEVLKKCK  179 (333)
Q Consensus       145 ----~l~ell~~aDvV~l~~P~t~~t~~li~~~~~~~mk  179 (333)
                          ..+++++++|+|+.++- +.+++..+++..+...|
T Consensus       115 ~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         115 KIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             cccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence                13467899999998875 66788888887765443

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.64  E-value=0.053  Score=48.03  Aligned_cols=89  Identities=19%  Similarity=0.173  Sum_probs=55.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhh---ccCCCEEEEecCCc--hhhHh
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDI---WPLADYITVHTPLI--PQTKN  168 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~el---l~~aDvV~l~~P~t--~~t~~  168 (333)
                      .|+||++-|.|. +.||+++|+.|...|++|++.|+....  .++.   ...+..-   .....++.+.+=.+  ++.+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~--l~~~---~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~   83 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLER--LKSA---ADELQANLPPTKQARVIPIQCNIRNEEEVNN   83 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--HHHH---HHHHHHTSCTTCCCCEEEEECCTTCHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--HHHH---HHHHHhhhccccCceEEEEeccCCCHHHHHH
Confidence            499999999998 569999999999999999999985422  1110   0011111   12456666666443  34455


Q ss_pred             hccHHHHhccCCCcEEEEccC
Q psy6348         169 LINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       169 li~~~~~~~mk~gailIN~aR  189 (333)
                      ++.. ..+.+.+=-+|||.+-
T Consensus        84 ~~~~-~~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          84 LVKS-TLDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHH-HHHHHSCCCEEEECCC
T ss_pred             HHHH-HHHHhCCeEEEEeecc
Confidence            5533 3344444457777763

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=93.62  E-value=0.062  Score=47.73  Aligned_cols=66  Identities=23%  Similarity=0.186  Sum_probs=48.6

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHH----hcCcccc---------ChhhhccCCCEEEEecCCc
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAA----KLNIASL---------GLEDIWPLADYITVHTPLI  163 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~----~~gv~~~---------~l~ell~~aDvV~l~~P~t  163 (333)
                      -|||.|+|. |.||+.+++.|.+.|++|++..|..+.....    ..+++.+         .++.++..+|.++...+..
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~   82 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ   82 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence            589999996 9999999999999999999997765332221    1254432         1456788999998887644

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=93.61  E-value=0.073  Score=45.31  Aligned_cols=36  Identities=25%  Similarity=0.214  Sum_probs=32.6

Q ss_pred             cCCCEEEEEecCh---HHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGLGR---IGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGlG~---IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |+||++-|.|.+.   ||+++|+.|...|++|+..++..
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~   41 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND   41 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence            7899999999864   99999999999999999988764

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.50  E-value=0.071  Score=45.92  Aligned_cols=37  Identities=22%  Similarity=0.259  Sum_probs=33.6

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +|+||++-|.|. +.||+++|++|...|++|+..|+..
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~   39 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL   39 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            689999999998 4599999999999999999999854

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=93.47  E-value=0.071  Score=47.78  Aligned_cols=33  Identities=24%  Similarity=0.268  Sum_probs=28.1

Q ss_pred             CEEEEEe-cChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVLG-LGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIG-lG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |++-|.| .|-||+.+++.|...|++|++.|+..
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~   35 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA   35 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5666888 69999999999999999999999854

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=93.45  E-value=0.13  Score=42.20  Aligned_cols=88  Identities=16%  Similarity=0.171  Sum_probs=51.3

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC-CCEEEEEc-CCCCHHHHHh----c-Ccc----ccChhhhccCCCEEEEecCCchhh
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF-GMKVIGFD-PMVSVEDAAK----L-NIA----SLGLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d-~~~~~~~a~~----~-gv~----~~~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      -||||+|. |-+|+++.+.|... .+++.... +........+    . +..    ....++.+.++|++++++|.... 
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~s-   84 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGTT-   84 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSHH-
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccchH-
Confidence            47999998 99999999999864 34655443 2221111111    1 111    11345667899999999994322 


Q ss_pred             HhhccHHHHhccCCCcEEEEccCCcc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARGGI  192 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg~~  192 (333)
                           .+....+.+....|+.+.+.-
T Consensus        85 -----~~~~~~l~~~~~~v~~~~~~~  105 (183)
T d2cvoa1          85 -----QEIIKGLPQELKIVDLSADFR  105 (183)
T ss_dssp             -----HHHHHTSCSSCEEEECSSTTT
T ss_pred             -----HHHHHHHHhcCcccccchhhh
Confidence                 333344555555555544433

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=93.43  E-value=0.11  Score=43.96  Aligned_cols=64  Identities=19%  Similarity=0.186  Sum_probs=45.3

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH----HHH------HhcCcccc--------ChhhhccCCCEEEE
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV----EDA------AKLNIASL--------GLEDIWPLADYITV  158 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~----~~a------~~~gv~~~--------~l~ell~~aDvV~l  158 (333)
                      -|||.|+|. |.||+.+++.|...|++|++.+|....    ...      ...+++.+        .+.+.++.+|.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~vi~   82 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS   82 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccchhHHHHHHhhccCCcEEEEeecccchhhhhhhhhceeeee
Confidence            378999997 999999999999999999999976522    111      11233321        24466778888877


Q ss_pred             ecC
Q psy6348         159 HTP  161 (333)
Q Consensus       159 ~~P  161 (333)
                      +.+
T Consensus        83 ~~~   85 (307)
T d1qyca_          83 TVG   85 (307)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            665

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.42  E-value=0.039  Score=41.73  Aligned_cols=33  Identities=27%  Similarity=0.429  Sum_probs=30.6

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      .+++.|||.|.+|-++|..++.+|.+|..+++.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~   53 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR   53 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence            479999999999999999999999999998764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.41  E-value=0.037  Score=42.84  Aligned_cols=34  Identities=24%  Similarity=0.299  Sum_probs=31.0

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+++.|||.|.||-++|..++.+|.+|....+..
T Consensus        26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            4799999999999999999999999999997543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.38  E-value=0.074  Score=46.01  Aligned_cols=37  Identities=24%  Similarity=0.271  Sum_probs=33.5

Q ss_pred             ccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|.|.+ .||+++|++|...|++|+.+|+..
T Consensus         5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~   42 (259)
T d1xq1a_           5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE   42 (259)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            5899999999984 599999999999999999999854

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.35  E-value=0.18  Score=43.38  Aligned_cols=88  Identities=20%  Similarity=0.228  Sum_probs=53.1

Q ss_pred             ccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCc--hhhHhhcc
Q psy6348          95 ELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLI--PQTKNLIN  171 (333)
Q Consensus        95 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t--~~t~~li~  171 (333)
                      .|.||++-|.|.+ -||+++|+.|...|++|+..|+..  +..++.   ...+.+......++.+.+=.+  ++.+.+++
T Consensus         1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~--~~l~~~---~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~   75 (258)
T d1iy8a_           1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS--EGLEAS---KAAVLETAPDAEVLTTVADVSDEAQVEAYVT   75 (258)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHH---HHHHHHHCTTCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHH---HHHHHhhCCCCeEEEEeccCCCHHHHHHHHH
Confidence            3789999999985 699999999999999999999854  222111   012223334455665554433  34555553


Q ss_pred             HHHHhccCCCcEEEEcc
Q psy6348         172 AEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       172 ~~~~~~mk~gailIN~a  188 (333)
                      . ..+.+.+=-+|||.+
T Consensus        76 ~-~~~~~G~iDiLVnnA   91 (258)
T d1iy8a_          76 A-TTERFGRIDGFFNNA   91 (258)
T ss_dssp             H-HHHHHSCCSEEEECC
T ss_pred             H-HHHHhCCCCEEEECC
Confidence            2 223333223666653

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=93.34  E-value=0.052  Score=46.52  Aligned_cols=66  Identities=15%  Similarity=0.111  Sum_probs=47.9

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH---HH------HHhcCcccc--------ChhhhccCCCEEEEec
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV---ED------AAKLNIASL--------GLEDIWPLADYITVHT  160 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~---~~------a~~~gv~~~--------~l~ell~~aDvV~l~~  160 (333)
                      +||.|+|. |.||+.+++.|.+.|++|++.+|....   ..      ....+++.+        ++.+.+..++.++.+.
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~   83 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL   83 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence            57999995 999999999999999999999876521   11      122344322        3456788999999887


Q ss_pred             CCch
Q psy6348         161 PLIP  164 (333)
Q Consensus       161 P~t~  164 (333)
                      +...
T Consensus        84 ~~~~   87 (312)
T d1qyda_          84 AGGV   87 (312)
T ss_dssp             CCSS
T ss_pred             hhcc
Confidence            6543

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=93.31  E-value=0.2  Score=42.95  Aligned_cols=86  Identities=17%  Similarity=0.140  Sum_probs=52.9

Q ss_pred             ccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCccccChhhhccCCCEEEEecCCc---hhhHhh
Q psy6348          95 ELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASLGLEDIWPLADYITVHTPLI---PQTKNL  169 (333)
Q Consensus        95 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t---~~t~~l  169 (333)
                      +|.||++-|.|.+ .||.++|+.+...|++|+..++.. ..+...       .+.....+..+.+..+=++   .+.+.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~   74 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA-------ELKAINPKVNITFHTYDVTVPVAESKKL   74 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH-------HHHHHCTTSEEEEEECCTTSCHHHHHHH
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH-------HHHhhCCCCCEEEEEeecCCCHHHHHHH
Confidence            5899999999985 599999999999999987776554 322221       2333444555666555443   234455


Q ss_pred             ccHHHHhccCCCcEEEEcc
Q psy6348         170 INAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       170 i~~~~~~~mk~gailIN~a  188 (333)
                      +++- .+...+=-+|||.+
T Consensus        75 ~~~~-~~~~g~iDilvnnA   92 (254)
T d1sbya1          75 LKKI-FDQLKTVDILINGA   92 (254)
T ss_dssp             HHHH-HHHHSCCCEEEECC
T ss_pred             HHHH-HHHcCCCCEEEeCC
Confidence            5332 22232212677765

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.30  E-value=0.13  Score=44.65  Aligned_cols=39  Identities=13%  Similarity=0.234  Sum_probs=35.5

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          93 GTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        93 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..+|+||++-|.|. |.||+++|+.|...|++|++.|+..
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~   59 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM   59 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            35899999999985 8899999999999999999999864

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.29  E-value=0.095  Score=45.34  Aligned_cols=39  Identities=36%  Similarity=0.375  Sum_probs=34.9

Q ss_pred             ccccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          93 GTELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        93 g~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ...|+||++-|.|. +.||+++|+.|...|++|++.+++.
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~   52 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS   52 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            45699999999995 8899999999999999999988764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=93.28  E-value=0.036  Score=47.36  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=32.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..|+|.|||.|..|...|..|+..|++|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            45799999999999999999999999999998753

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=93.23  E-value=0.1  Score=42.89  Aligned_cols=94  Identities=15%  Similarity=0.264  Sum_probs=58.0

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCCC-CHHHHHh-----cC---ccccChhhhccCCCEEEEecCCchhhH
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPMV-SVEDAAK-----LN---IASLGLEDIWPLADYITVHTPLIPQTK  167 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~~-~~~~a~~-----~g---v~~~~l~ell~~aDvV~l~~P~t~~t~  167 (333)
                      .+|||+|. |.+|+++.+.|..+ ..++...-.+. ......+     .+   +...+.+++..++|++++++|... ..
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~-s~   80 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-SY   80 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-HH
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHH-HH
Confidence            48999998 99999999999764 34665553222 1111111     11   223366777788999999999543 23


Q ss_pred             hhccHHHHhccCCCcEEEEccCCcccchHhHH
Q psy6348         168 NLINAEVLKKCKKGVRVVNVARGGIVDENALL  199 (333)
Q Consensus       168 ~li~~~~~~~mk~gailIN~aRg~~vd~~aL~  199 (333)
                      .+     .... .+..+||.|..==.+....+
T Consensus        81 ~~-----~~~~-~~~~VIDlSadfRl~~~~~y  106 (176)
T d1vkna1          81 DL-----VREL-KGVKIIDLGADFRFDDPGVY  106 (176)
T ss_dssp             HH-----HTTC-CSCEEEESSSTTTCSSHHHH
T ss_pred             HH-----HHhh-ccceEEecCccccccchhhH
Confidence            22     2333 57899999765444444433

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=93.20  E-value=0.21  Score=40.78  Aligned_cols=94  Identities=12%  Similarity=0.024  Sum_probs=63.5

Q ss_pred             ccCCCEEEEEecC--hHHHHHHHHHhhCCCEEEEEcCCC---CHH-------HHHhcCcc--c-cChhhhccCCCEEEEe
Q psy6348          95 ELYGKTLAVLGLG--RIGREVALRMQAFGMKVIGFDPMV---SVE-------DAAKLNIA--S-LGLEDIWPLADYITVH  159 (333)
Q Consensus        95 ~l~gktvGIIGlG--~IG~~vA~~l~~~G~~V~~~d~~~---~~~-------~a~~~gv~--~-~~l~ell~~aDvV~l~  159 (333)
                      .+.|.+|++||=|  ++..+++..+..||+++..+.|..   ...       .....|..  . .++++.++++|+|..-
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            4788999999955  799999999999999999998742   221       12223432  2 3799999999999875


Q ss_pred             cCCc----h---hh-------HhhccHHHHhccCCCcEEEEcc
Q psy6348         160 TPLI----P---QT-------KNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       160 ~P~t----~---~t-------~~li~~~~~~~mk~gailIN~a  188 (333)
                      +=..    .   ..       ...++.......+++++|..+.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            4211    0   00       1122334445678889999884

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=93.18  E-value=0.22  Score=42.62  Aligned_cols=85  Identities=20%  Similarity=0.097  Sum_probs=52.0

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCccccChhhhccCCCEEEEecCCc--hhhHhhcc
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIASLGLEDIWPLADYITVHTPLI--PQTKNLIN  171 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~~~~l~ell~~aDvV~l~~P~t--~~t~~li~  171 (333)
                      .|+||++-|.|. +.||+++|++|...|++|+..|+..  +..++.      .+++-...++..+.+-.+  ++.+.++.
T Consensus         3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~--~~~~~~------~~~~~~~~~~~~~~~Dv~~~~~v~~~~~   74 (251)
T d1zk4a1           3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHS--DVGEKA------AKSVGTPDQIQFFQHDSSDEDGWTKLFD   74 (251)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH--HHHHHH------HHHHCCTTTEEEEECCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH--HHHHHH------HHHhCCCCcEEEEEccCCCHHHHHHHHH
Confidence            489999999997 5699999999999999999999853  222211      111212334555554433  34455553


Q ss_pred             HHHHhccCCCcEEEEcc
Q psy6348         172 AEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       172 ~~~~~~mk~gailIN~a  188 (333)
                      . ..+.+.+=-+|||.+
T Consensus        75 ~-~~~~~G~iDiLVnnA   90 (251)
T d1zk4a1          75 A-TEKAFGPVSTLVNNA   90 (251)
T ss_dssp             H-HHHHHSSCCEEEECC
T ss_pred             H-HHHHhCCceEEEecc
Confidence            3 222232223777775

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=93.11  E-value=0.15  Score=43.68  Aligned_cols=38  Identities=29%  Similarity=0.212  Sum_probs=34.0

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV  133 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~  133 (333)
                      |.||++-|-|. +.||+++|+.|...|++|+..|+....
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            78999999995 789999999999999999999987643

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.01  E-value=0.041  Score=44.05  Aligned_cols=62  Identities=11%  Similarity=0.037  Sum_probs=43.2

Q ss_pred             EEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCCHHHHHhc-------Cc------c-ccChhhhccCCCEEE
Q psy6348         100 TLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVSVEDAAKL-------NI------A-SLGLEDIWPLADYIT  157 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~~~a~~~-------gv------~-~~~l~ell~~aDvV~  157 (333)
                      ||.|||. |.+|+.+|-.|..-++       .+..||.....+.++.+       ..      . ..+.++.+++||+|+
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvVV   84 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAI   84 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEEE
Confidence            8999995 9999999998864332       57778876544433221       11      0 125678999999999


Q ss_pred             EecC
Q psy6348         158 VHTP  161 (333)
Q Consensus       158 l~~P  161 (333)
                      ++.-
T Consensus        85 itag   88 (154)
T d5mdha1          85 LVGS   88 (154)
T ss_dssp             ECCS
T ss_pred             Eecc
Confidence            9863

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.00  E-value=0.087  Score=45.45  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=33.8

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..|+||++-|.|. +.||+++|++|...|++|+..|+..
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   45 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA   45 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3589999999988 5699999999999999999999853

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=92.99  E-value=0.053  Score=45.54  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=31.7

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..+||.|||.|..|...|..|+..|++|.++++..
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35799999999999999999999999999998643

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=92.92  E-value=0.082  Score=43.14  Aligned_cols=95  Identities=14%  Similarity=0.138  Sum_probs=56.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhC-CCEEEEEcCC---C-CHHHHHh-----cCc---cc---cChhhhccCCCEEEEecC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAF-GMKVIGFDPM---V-SVEDAAK-----LNI---AS---LGLEDIWPLADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~-G~~V~~~d~~---~-~~~~a~~-----~gv---~~---~~l~ell~~aDvV~l~~P  161 (333)
                      .+|+|+|. |.+|+++.+.|... .+++......   . ..+....     .+.   ..   .+.++....+|++++++|
T Consensus         2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp   81 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA   81 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence            48999995 99999999999876 5676544211   1 1111111     011   11   134455788999999999


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEccCCcccchHhH
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVARGGIVDENAL  198 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~aRg~~vd~~aL  198 (333)
                      .... .. +   .-...+.|..+|+.+..--.+....
T Consensus        82 ~~~s-~~-~---~~~~~~~~~~vIDlSadfRl~~~~~  113 (179)
T d2g17a1          82 HEVS-HD-L---APQFLQAGCVVFDLSGAFRVNDRAF  113 (179)
T ss_dssp             HHHH-HH-H---HHHHHHTTCEEEECSSTTSSSCHHH
T ss_pred             chhH-HH-H---hhhhhhcCceeeccccccccccccc
Confidence            3221 11 1   2222468899999976554444433

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=92.91  E-value=0.14  Score=43.93  Aligned_cols=38  Identities=26%  Similarity=0.129  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..|.||++-|.|. +.||+++|+.|...|++|+.+|+..
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~   44 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ   44 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence            4578999999998 5799999999999999999999853

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=92.87  E-value=0.029  Score=48.13  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=32.7

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCC-EEEEEcCC
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGM-KVIGFDPM  130 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~  130 (333)
                      .|.+++|.|||+|.+|..+|..|...|. ++..+|+.
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            4899999999999999999999999998 78888854

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.79  E-value=0.079  Score=46.05  Aligned_cols=37  Identities=24%  Similarity=0.258  Sum_probs=33.4

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|.|. +.||+++|+.|...|++|+..|+..
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~   39 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSS   39 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            489999999988 5699999999999999999999854

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=92.65  E-value=0.065  Score=43.47  Aligned_cols=87  Identities=21%  Similarity=0.152  Sum_probs=52.7

Q ss_pred             EEEEEec-ChHHHHHHHHHhh-CCCEEEE-EcCCCCHHHH---------HhcCcccc-ChhhhccCCCEEEEecCCchhh
Q psy6348         100 TLAVLGL-GRIGREVALRMQA-FGMKVIG-FDPMVSVEDA---------AKLNIASL-GLEDIWPLADYITVHTPLIPQT  166 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~-~G~~V~~-~d~~~~~~~a---------~~~gv~~~-~l~ell~~aDvV~l~~P~t~~t  166 (333)
                      +|+|+|+ |+||+.+++.+.. -++++.+ +|+..+....         ...++... ++++++..+|+|+=-.. .+.+
T Consensus         6 kI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~-p~~~   84 (162)
T d1diha1           6 RVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PEGT   84 (162)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HHHH
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc-HHHH
Confidence            7999996 9999999998865 4778654 5654322111         11223332 67889999999886653 2233


Q ss_pred             HhhccHHHHhccCCCcEEEEccCCc
Q psy6348         167 KNLINAEVLKKCKKGVRVVNVARGG  191 (333)
Q Consensus       167 ~~li~~~~~~~mk~gailIN~aRg~  191 (333)
                      ...+.    ...+.+.-+|--++|-
T Consensus        85 ~~~~~----~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          85 LNHLA----FCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             HHHHH----HHHHTTCEEEECCCCC
T ss_pred             HHHHH----HHHhccceeEEecCCC
Confidence            33321    1134556677666663

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=92.62  E-value=0.093  Score=45.44  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=34.1

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+|+||++-|.|. +.||+++|++|...|++|++.++..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~   41 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSK   41 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4699999999986 6799999999999999999998864

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.54  E-value=0.12  Score=41.89  Aligned_cols=87  Identities=16%  Similarity=0.064  Sum_probs=61.9

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chhh----hc-----cCCCEEEEecCCc
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLED----IW-----PLADYITVHTPLI  163 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~e----ll-----~~aDvV~l~~P~t  163 (333)
                      ..|.+|-|-|. |.+|....+.++.+|++|++..+.. ..+.++++|...+ +.++    ..     +..|+|+-++-. 
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vgg-  100 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGG-  100 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCT-
T ss_pred             CCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCcH-
Confidence            45668899885 9999999999999999999988765 5577788887543 2121    11     347777766531 


Q ss_pred             hhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         164 PQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       164 ~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                           -.-.+.+..++++..++.++
T Consensus       101 -----~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2         101 -----KQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             -----HHHHHHHTTEEEEEEEEECC
T ss_pred             -----HHHHHHHHHhccCceEEEee
Confidence                 12255677788888888874

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=92.47  E-value=0.1  Score=42.74  Aligned_cols=88  Identities=15%  Similarity=0.118  Sum_probs=58.6

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-Chh-----hhc--cCCCEEEEecCCchh
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-GLE-----DIW--PLADYITVHTPLIPQ  165 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-~l~-----ell--~~aDvV~l~~P~t~~  165 (333)
                      ..+.++.|.|. |.+|+...+.++.+|++|++..+.. ..+.++++|...+ +.+     +.+  ...|.++-++-  . 
T Consensus        30 ~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vg--g-  106 (177)
T d1o89a2          30 PQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVG--D-  106 (177)
T ss_dssp             GGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSC--H-
T ss_pred             CCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcc--h-
Confidence            34557777765 9999999999999999999988765 4455677776432 111     111  12466665553  1 


Q ss_pred             hHhhccHHHHhccCCCcEEEEccC
Q psy6348         166 TKNLINAEVLKKCKKGVRVVNVAR  189 (333)
Q Consensus       166 t~~li~~~~~~~mk~gailIN~aR  189 (333)
                         -.-.+.++.|+++..+|+++.
T Consensus       107 ---~~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         107 ---KVLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             ---HHHHHHHHTEEEEEEEEECCC
T ss_pred             ---HHHHHHHHHhccccceEeecc
Confidence               123567777888888888754

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.45  E-value=0.081  Score=43.33  Aligned_cols=89  Identities=13%  Similarity=-0.006  Sum_probs=61.0

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcCcccc-----Chhhhc-----cCCCEEEEecC
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLNIASL-----GLEDIW-----PLADYITVHTP  161 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~gv~~~-----~l~ell-----~~aDvV~l~~P  161 (333)
                      ..-.|.+|.|-|. |.+|....+.++.+|.+|++..++. ..+.++++|...+     ..++..     +..|+|+-++.
T Consensus        28 ~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~vg  107 (176)
T d1xa0a2          28 LTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVG  107 (176)
T ss_dssp             CCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECST
T ss_pred             CCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcCC
Confidence            3345889999995 9999999999999999999988765 5677777776432     112211     24667766654


Q ss_pred             CchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         162 LIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       162 ~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .      -.-...+..|+++..++.++
T Consensus       108 g------~~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         108 G------RTLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             T------TTHHHHHHTEEEEEEEEECS
T ss_pred             c------hhHHHHHHHhCCCceEEEee
Confidence            1      12355667778887777774

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=92.38  E-value=0.082  Score=45.65  Aligned_cols=37  Identities=24%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|+||++-|.|. +.||+++|+.|...|++|+..|+..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~   39 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHA   39 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            488999999987 6899999999999999999999854

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=92.33  E-value=0.13  Score=41.90  Aligned_cols=86  Identities=9%  Similarity=0.056  Sum_probs=58.1

Q ss_pred             CCCEEEEE--ecChHHHHHHHHHhhCCCEEEEEcCCC-CH----HHHHhcCcccc-C--------h----hhh----ccC
Q psy6348          97 YGKTLAVL--GLGRIGREVALRMQAFGMKVIGFDPMV-SV----EDAAKLNIASL-G--------L----EDI----WPL  152 (333)
Q Consensus        97 ~gktvGII--GlG~IG~~vA~~l~~~G~~V~~~d~~~-~~----~~a~~~gv~~~-~--------l----~el----l~~  152 (333)
                      .|.++.|+  |.|.+|+...+.++.+|.+|++.-+.. ..    +..+++|...+ +        +    .++    -..
T Consensus        28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~  107 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  107 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence            47788888  679999999999999999999875543 22    23456675322 1        1    111    134


Q ss_pred             CCEEEEecCCchhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         153 ADYITVHTPLIPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       153 aDvV~l~~P~t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                      .|+++-++. .+.     ....+..|+++..+|.++
T Consensus       108 vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G  137 (189)
T d1gu7a2         108 AKLALNCVG-GKS-----STGIARKLNNNGLMLTYG  137 (189)
T ss_dssp             EEEEEESSC-HHH-----HHHHHHTSCTTCEEEECC
T ss_pred             ceEEEECCC-cch-----hhhhhhhhcCCcEEEEEC
Confidence            788887764 121     145678899999999885

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=92.20  E-value=0.074  Score=47.25  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=32.2

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +.|+|.|||.|..|...|..|+..|.+|++++...
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~   35 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD   35 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence            36899999999999999999999999999998765

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.04  E-value=0.097  Score=46.41  Aligned_cols=38  Identities=29%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ..|.||++-|-|. +.||+++|+.|...|++|++.|+..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            4689999999998 4699999999999999999998754

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.95  E-value=0.072  Score=46.22  Aligned_cols=39  Identities=23%  Similarity=0.253  Sum_probs=34.2

Q ss_pred             ccccCCCEEEEEecC---hHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          93 GTELYGKTLAVLGLG---RIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        93 g~~l~gktvGIIGlG---~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ...|+||++-|.|.+   -||+++|++|...|++|+..++..
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVP   44 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCch
Confidence            357999999999986   599999999999999999887643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=91.80  E-value=0.1  Score=43.79  Aligned_cols=37  Identities=22%  Similarity=0.206  Sum_probs=33.8

Q ss_pred             ccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .-.+|+|.|||.|..|...|..|+..|++|..++...
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~   82 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE   82 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence            3478999999999999999999999999999998755

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.69  E-value=0.11  Score=43.51  Aligned_cols=68  Identities=18%  Similarity=0.129  Sum_probs=47.9

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCH---HHHHhcCcc------ccChhhhccCCCEEEEecCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSV---EDAAKLNIA------SLGLEDIWPLADYITVHTPL  162 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~---~~a~~~gv~------~~~l~ell~~aDvV~l~~P~  162 (333)
                      .+.+|+|.|.|. |.||+.+++.|...|.  +|++++|....   .........      ..++.+.++.+|+++.++..
T Consensus        11 ~m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~~~~~~i~~~~~D~~~~~~~~~~~~~~d~vi~~~~~   90 (232)
T d2bkaa1          11 RMQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT   90 (232)
T ss_dssp             HHTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcccccceeeeeeecccccccccccccccccccccccc
Confidence            357899999987 9999999999987775  89999876521   111111111      12466778999999887753

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=91.62  E-value=0.12  Score=45.70  Aligned_cols=65  Identities=18%  Similarity=0.168  Sum_probs=45.7

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCH-HHHHhc-------C--------c-cccChhhhccCCCEEE
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSV-EDAAKL-------N--------I-ASLGLEDIWPLADYIT  157 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~-------g--------v-~~~~l~ell~~aDvV~  157 (333)
                      -.||+|.|.|. |-||+.+++.|...|++|++..|..+. +.....       .        + ...++++++..+|.|+
T Consensus         9 ~~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~   88 (342)
T d1y1pa1           9 PEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVA   88 (342)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEE
T ss_pred             CCcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhh
Confidence            35999999987 889999999999999999998765422 111110       0        0 0124667889999887


Q ss_pred             Eec
Q psy6348         158 VHT  160 (333)
Q Consensus       158 l~~  160 (333)
                      .+.
T Consensus        89 ~~a   91 (342)
T d1y1pa1          89 HIA   91 (342)
T ss_dssp             ECC
T ss_pred             hhc
Confidence            554

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.54  E-value=0.19  Score=42.77  Aligned_cols=37  Identities=27%  Similarity=0.248  Sum_probs=33.7

Q ss_pred             ccCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|.||++-|.|.+ .||+++|++|...|++|++.|+..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~   41 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS   41 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            5899999999985 599999999999999999999864

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.48  E-value=0.088  Score=44.91  Aligned_cols=36  Identities=25%  Similarity=0.197  Sum_probs=32.2

Q ss_pred             cCCCEEEEEec-Ch--HHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGL-GR--IGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGl-G~--IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |+||++-|.|. |.  ||.++|+.|...|++|+..++..
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~   42 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR   42 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence            78999999996 54  99999999999999999988754

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.37  E-value=0.23  Score=38.87  Aligned_cols=31  Identities=23%  Similarity=0.404  Sum_probs=24.2

Q ss_pred             EEEEEe-cChHHHHHHHHHh-hCCCEEEE-EcCC
Q psy6348         100 TLAVLG-LGRIGREVALRMQ-AFGMKVIG-FDPM  130 (333)
Q Consensus       100 tvGIIG-lG~IG~~vA~~l~-~~G~~V~~-~d~~  130 (333)
                      ||+|+| .|+||+.+++.+. .-++++.+ +|+.
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~   34 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAG   34 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecC
Confidence            699999 6999999998765 46788654 5654

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.30  E-value=0.12  Score=45.32  Aligned_cols=61  Identities=16%  Similarity=0.220  Sum_probs=41.5

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCC--HHHHHhc-C---cccc---ChhhhccCCCEEEEe
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVS--VEDAAKL-N---IASL---GLEDIWPLADYITVH  159 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~--~~~a~~~-g---v~~~---~l~ell~~aDvV~l~  159 (333)
                      |+|.|.|. |-||+.+++.|...|++|++.|+..+  .+..... .   +...   .++.++.++|+|+-+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~Vihl   72 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVEPLYIEVDQIYHL   72 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGGTGGGTTCTTEEEEECCTTSCCCCCCSEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHHHHHhcCCCceEEEehHHHHHHHcCCCEEEEC
Confidence            78999987 99999999999999999999986432  2211111 1   1111   255666789987533

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=91.29  E-value=0.11  Score=45.12  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=33.1

Q ss_pred             ccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          95 ELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        95 ~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|.||++-|-|. +.||+++|+.|...|++|+..|+..
T Consensus         1 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~   38 (274)
T d1xhla_           1 RFSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNE   38 (274)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            378999999988 5699999999999999999999854

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=91.09  E-value=0.45  Score=42.18  Aligned_cols=122  Identities=20%  Similarity=0.221  Sum_probs=74.3

Q ss_pred             CcEEEECC-CCCchHHHHHHHHHHHHHhcCCCccchhhhcCcccccCCCccccCCCEEEEEec---ChHHHHHHHHHhhC
Q psy6348          45 GVLVLNAP-GGNFISACELTCSLISALSRNVPQGCQSLKEGKWDRKLYTGTELYGKTLAVLGL---GRIGREVALRMQAF  120 (333)
Q Consensus        45 gI~V~n~p-~~n~~avAE~~l~l~l~~~R~i~~~~~~~~~g~w~~~~~~g~~l~gktvGIIGl---G~IG~~vA~~l~~~  120 (333)
                      .|+|.|+. +.+..++-  +++=++.+.++                  .| .+.|++|+++|-   +++-.+.+..+..+
T Consensus       121 ~vPVINAg~~~~~HP~Q--~LaD~~Ti~e~------------------~g-~l~~~~i~~vGD~~~~~v~~S~~~~~~~~  179 (310)
T d1tuga1         121 NVPVLNAGDGSNQHPTQ--TLLDLFTIQET------------------QG-RLDNLHVAMVGDLKYGRTVHSLTQALAKF  179 (310)
T ss_dssp             TSCEEEEEETTSCCHHH--HHHHHHHHHHH------------------HS-CSSSCEEEEESCTTTCHHHHHHHHHHTTS
T ss_pred             CccEEECCCCcccchHH--HHHHHHHHHHH------------------cC-CcccceEEEEeccccCcchHHHHHHHHhc
Confidence            69999963 44455554  33333333221                  12 378999999997   78889999889888


Q ss_pred             C-CEEEEEcCCC---CH---HHHHhcCcc--c-cChhhhccCCCEEEEecCCchh-----h-----HhhccHHHHhccCC
Q psy6348         121 G-MKVIGFDPMV---SV---EDAAKLNIA--S-LGLEDIWPLADYITVHTPLIPQ-----T-----KNLINAEVLKKCKK  180 (333)
Q Consensus       121 G-~~V~~~d~~~---~~---~~a~~~gv~--~-~~l~ell~~aDvV~l~~P~t~~-----t-----~~li~~~~~~~mk~  180 (333)
                      | +++..+.|..   ..   +.+++.+..  . .++++.++++|+|....--.+.     .     .-.++.+.++.+++
T Consensus       180 ~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~  259 (310)
T d1tuga1         180 DGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKA  259 (310)
T ss_dssp             SSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCS
T ss_pred             cCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCC
Confidence            5 7898887743   22   223334432  2 3789999999998753221110     0     01134455556666


Q ss_pred             CcEEEEc
Q psy6348         181 GVRVVNV  187 (333)
Q Consensus       181 gailIN~  187 (333)
                      ++++..|
T Consensus       260 ~~i~MHc  266 (310)
T d1tuga1         260 NMKVLHP  266 (310)
T ss_dssp             SCEEECC
T ss_pred             CcEEeeC
Confidence            6666655

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=91.01  E-value=0.12  Score=45.55  Aligned_cols=36  Identities=31%  Similarity=0.425  Sum_probs=32.9

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+||||.|.|. |-||+.+++.|...|++|+++|+..
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            46899999994 9999999999999999999999865

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=91.00  E-value=0.1  Score=42.61  Aligned_cols=38  Identities=32%  Similarity=0.608  Sum_probs=30.4

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEE-cCCCCHHHH
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGF-DPMVSVEDA  136 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~-d~~~~~~~a  136 (333)
                      .||||=||||||+.+.+.+...+.+|.+. |+..+.+..
T Consensus         1 ~kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~~~   39 (169)
T d1dssg1           1 SKIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALEYM   39 (169)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHHHH
Confidence            37999999999999999988778888776 555565443

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=90.90  E-value=0.086  Score=43.79  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=30.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ++|.|||.|..|...|.+|+..|++|++++...
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~   33 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSA   33 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            479999999999999999999999999998753

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.89  E-value=0.51  Score=40.13  Aligned_cols=36  Identities=33%  Similarity=0.290  Sum_probs=32.2

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +.||++-|.|. +.||+++|+.|...|++|+..|+..
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~   37 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNL   37 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            46999999998 5699999999999999999999864

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.71  E-value=0.14  Score=45.39  Aligned_cols=64  Identities=16%  Similarity=0.071  Sum_probs=44.4

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhc-Ccc--cc------ChhhhccCCCEEEEec
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKL-NIA--SL------GLEDIWPLADYITVHT  160 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~-gv~--~~------~l~ell~~aDvV~l~~  160 (333)
                      .+++|.|.|. |-||+.+++.|...|++|+++|+.......... ..+  ..      .+.++++..|.|+-+.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~Vih~a   87 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLA   87 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCGGGTCSEEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhhhcccCcEEEeechhHHHHHHHhhcCCeEeecc
Confidence            6889999985 999999999999999999999875432111111 111  11      3445677899877654

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=90.60  E-value=0.27  Score=41.95  Aligned_cols=33  Identities=33%  Similarity=0.390  Sum_probs=27.2

Q ss_pred             CEEEEE-ec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVL-GL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGII-Gl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |||.+| |. +.||+++|+.|...|++|+..|+..
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r~~   35 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYND   35 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            566555 65 5699999999999999999999854

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=90.43  E-value=0.13  Score=41.96  Aligned_cols=104  Identities=19%  Similarity=0.241  Sum_probs=60.1

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHh---cCccccCh-hhhccCCCEEEEecCCchhhHhhccH--
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAK---LNIASLGL-EDIWPLADYITVHTPLIPQTKNLINA--  172 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~---~gv~~~~l-~ell~~aDvV~l~~P~t~~t~~li~~--  172 (333)
                      .+|||=||||||+.+.+.+..-+.+|.+.+...+.+....   +.-..-.+ .++-...|.+++    ......+...  
T Consensus         1 ikigINGfGRIGR~~~R~l~~~~i~iv~INd~~~~~~~ayLl~yDS~hG~~~~~v~~~~~~l~i----~g~~I~~~~~~~   76 (168)
T d2g82a1           1 MKVGINGFGRIGRQVFRILHSRGVEVALINDLTDNKTLAHLLKYDSIYHRFPGEVAYDDQYLYV----DGKAIRATAVKD   76 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSCHHHHHHHHHCCTTTCSCSSCEEECSSEEEE----TTEEEEEECCSS
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEECCCcchhhhhheeecccccCccccccccccceeEe----cceeEEEEecCC
Confidence            3799999999999999988877888888754444443322   11110011 122233455544    1111222222  


Q ss_pred             -HHHhccCCCcEEEEccCCcccchHhHHhhhhcCC
Q psy6348         173 -EVLKKCKKGVRVVNVARGGIVDENALLDSLKCGH  206 (333)
Q Consensus       173 -~~~~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  206 (333)
                       +.+..=+-|+-+|==+.|.-.+.+.+...|+.|-
T Consensus        77 p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~ga  111 (168)
T d2g82a1          77 PKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGGA  111 (168)
T ss_dssp             GGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTTC
T ss_pred             hHHCcccccCCceeEeccccccchHHhhhhhcccc
Confidence             2233333455555556888888888888888764

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.24  E-value=0.23  Score=40.53  Aligned_cols=100  Identities=18%  Similarity=0.260  Sum_probs=60.9

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhh---CCC----EEEEEcCCCCHHHHHh-------cCc------c-ccChhhhccCCCE
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQA---FGM----KVIGFDPMVSVEDAAK-------LNI------A-SLGLEDIWPLADY  155 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~---~G~----~V~~~d~~~~~~~a~~-------~gv------~-~~~l~ell~~aDv  155 (333)
                      -.+|.|+|. |.||+.++-+|..   ||.    .+..+|.....+.++.       ...      . ..+..+.++++|+
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDv  103 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDW  103 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSE
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCce
Confidence            348999996 9999999988875   453    6667776543332221       110      1 1267889999999


Q ss_pred             EEEecCCc--h---------hhHhhcc--HHHHhc-cCCCcEEEEccCCcccchHhHH
Q psy6348         156 ITVHTPLI--P---------QTKNLIN--AEVLKK-CKKGVRVVNVARGGIVDENALL  199 (333)
Q Consensus       156 V~l~~P~t--~---------~t~~li~--~~~~~~-mk~gailIN~aRg~~vd~~aL~  199 (333)
                      |++..-..  +         .+..++.  .+.+.. .+++++++-++.  .+|.-+++
T Consensus       104 Vvi~ag~~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~i  159 (175)
T d7mdha1         104 ALLIGAKPRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALI  159 (175)
T ss_dssp             EEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHH
T ss_pred             EEEeeccCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHH
Confidence            99986321  1         1112221  112333 466887777754  68877765

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.22  E-value=0.066  Score=43.86  Aligned_cols=85  Identities=14%  Similarity=0.159  Sum_probs=57.1

Q ss_pred             CCEEEEEe-cChHHHHHHHHHhhCCCE-EEEEcCCCCH--HHHHhcCcccc------Chhhhcc-----CCCEEEEecCC
Q psy6348          98 GKTLAVLG-LGRIGREVALRMQAFGMK-VIGFDPMVSV--EDAAKLNIASL------GLEDIWP-----LADYITVHTPL  162 (333)
Q Consensus        98 gktvGIIG-lG~IG~~vA~~l~~~G~~-V~~~d~~~~~--~~a~~~gv~~~------~l~ell~-----~aDvV~l~~P~  162 (333)
                      +++|-|.| .|.+|+...+.++.+|++ |++.+.....  ...++.|...+      ++.+.++     .+|+|+-++- 
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG-  109 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG-  109 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC-
Confidence            47899999 599999999999999985 5555554322  23345665321      3333332     3899988874 


Q ss_pred             chhhHhhccHHHHhccCCCcEEEEcc
Q psy6348         163 IPQTKNLINAEVLKKCKKGVRVVNVA  188 (333)
Q Consensus       163 t~~t~~li~~~~~~~mk~gailIN~a  188 (333)
                       .+    .-...++.++++..++.++
T Consensus       110 -g~----~~~~~~~~l~~~G~iv~~G  130 (187)
T d1vj1a2         110 -GD----ISNTVISQMNENSHIILCG  130 (187)
T ss_dssp             -HH----HHHHHHTTEEEEEEEEEC-
T ss_pred             -ch----hHHHHhhhccccccEEEec
Confidence             11    2256778899999999884

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.12  E-value=0.2  Score=42.88  Aligned_cols=37  Identities=27%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             cccCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          94 TELYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        94 ~~l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      +.|.||++-|.|. +.||+++|+.|...|++|+..+++
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~   39 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGS   39 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCC
Confidence            4699999999988 459999999999999999875443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.75  E-value=0.14  Score=43.91  Aligned_cols=36  Identities=28%  Similarity=0.221  Sum_probs=32.2

Q ss_pred             cCCCEEEEEecC-hHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGLG-RIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGlG-~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |+||++-|.|.+ .||+++|++|...|++|+..++..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~   38 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGD   38 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSC
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            689999988885 599999999999999999999864

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.38  E-value=0.21  Score=41.62  Aligned_cols=33  Identities=27%  Similarity=0.456  Sum_probs=30.2

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      -++|.|||.|.-|-..|..|+..|++|.++...
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~   37 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEAR   37 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC
Confidence            457999999999999999999999999999754

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.38  E-value=0.16  Score=35.99  Aligned_cols=44  Identities=18%  Similarity=0.293  Sum_probs=35.9

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC-CHHHHHhcC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV-SVEDAAKLN  140 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~-~~~~a~~~g  140 (333)
                      .|.++.|.|. |.+|....+.++.+|++|++...+. +.+..+++|
T Consensus        31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k~~~~~~lG   76 (77)
T d1o8ca2          31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLG   76 (77)
T ss_dssp             GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHT
T ss_pred             CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHHHHHHHHCC
Confidence            5778999887 9999999999999999999987765 445555555

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.37  E-value=0.14  Score=41.13  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=28.9

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      +|.|||.|..|...|..|+..|+ +|.+++...
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~   34 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD   34 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence            58999999999999999999997 699998753

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.34  E-value=0.15  Score=43.44  Aligned_cols=36  Identities=33%  Similarity=0.358  Sum_probs=32.7

Q ss_pred             cCCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |.||++-|.|. +.||+++|+.|...|++|++.|+..
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~   40 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINE   40 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            89999988887 7899999999999999999999853

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.25  E-value=0.11  Score=44.38  Aligned_cols=32  Identities=16%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +|.|||.|..|..+|..|+..|.+|.++++..
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            69999999999999999999999999999865

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=89.05  E-value=0.29  Score=39.80  Aligned_cols=103  Identities=18%  Similarity=0.200  Sum_probs=54.5

Q ss_pred             EEEEEecChHHHHHHHHHhh---CCCEEEEEcCCCCHHHHHhcCcccc----Chh-hhccCCCEEEEecCCchhhHhhcc
Q psy6348         100 TLAVLGLGRIGREVALRMQA---FGMKVIGFDPMVSVEDAAKLNIASL----GLE-DIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~---~G~~V~~~d~~~~~~~a~~~gv~~~----~l~-ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      ||||=||||||+.+.+.+..   .+.+|++.+...+.+....+ +++.    .++ ++-..-|.+++    +.....++.
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayL-lkyDS~hG~~~~~v~~~~~~l~i----ng~~I~~~~   76 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHL-LKYDSVHKKFPGKVEYTENSLIV----DGKEIKVFA   76 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHH-HHCCTTTCCCSSCEEECSSEEEE----TTEEEEEEC
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHH-HhccccccccCceEEEECCEEEE----CCEEEEEEe
Confidence            79999999999999998763   35788887543444433221 1110    011 11112333333    111122222


Q ss_pred             HHHHhcc---CCCc-EEEEccCCcccchHhHHhhhhcCCce
Q psy6348         172 AEVLKKC---KKGV-RVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       172 ~~~~~~m---k~ga-ilIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ....+.+   +-|+ ++|.| +|.--+.+.+...|+.|--+
T Consensus        77 ~~~p~~i~W~~~gvD~ViEc-TG~f~t~~~~~~hl~~Gakk  116 (169)
T d1hdgo1          77 EPDPSKLPWKDLGVDFVIES-TGVFRNREKAELHLQAGAKK  116 (169)
T ss_dssp             CSSGGGSCHHHHTCCEEEEC-SSSCCBHHHHTHHHHTTCSE
T ss_pred             CCChhhCCccccCCCEEEEe-cceeccccchhhhccCCCce
Confidence            1111111   1122 56665 77778888888888877543

>d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein PA4017
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.77  E-value=0.2  Score=40.98  Aligned_cols=64  Identities=19%  Similarity=0.084  Sum_probs=41.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC--EEEEEcCCCCHHHHHhcCccccC----hhhhccCCCEEEEecCCc
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM--KVIGFDPMVSVEDAAKLNIASLG----LEDIWPLADYITVHTPLI  163 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~--~V~~~d~~~~~~~a~~~gv~~~~----l~ell~~aDvV~l~~P~t  163 (333)
                      |+|.|.|. |.||+.+++.|.+.|.  +|+...|....... .......+    .+.+....|.|+.|+-.+
T Consensus         3 KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~~~-~~~~~~~d~~~~~~~~~~~~d~vi~~~g~~   73 (212)
T d2a35a1           3 KRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAEHP-RLDNPVGPLAELLPQLDGSIDTAFCCLGTT   73 (212)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCCCT-TEECCBSCHHHHGGGCCSCCSEEEECCCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhhcc-cccccccchhhhhhccccchheeeeeeeee
Confidence            79999999 9999999999999897  67766655422111 11111112    334455689999886433

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.70  E-value=0.12  Score=41.18  Aligned_cols=97  Identities=23%  Similarity=0.252  Sum_probs=55.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCC-------EEEEEcCCCCHHHHHh-------cC---cc---c-cChhhhccCCCEE
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGM-------KVIGFDPMVSVEDAAK-------LN---IA---S-LGLEDIWPLADYI  156 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~-------~V~~~d~~~~~~~a~~-------~g---v~---~-~~l~ell~~aDvV  156 (333)
                      .||.|||. |.+|+.+|..|...++       ....++.....+....       ..   ..   . .+..+.+++||+|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~advV   84 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPLLAGLEATDDPKVAFKDADYA   84 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhhhhccccccccccccCCchhhhcccccEE
Confidence            38999996 9999999998876432       2333444332222211       00   11   1 2567899999999


Q ss_pred             EEecC--Cchh-hH-hhc--c--------HHHHhccCCCcEEEEccCCcccchHh
Q psy6348         157 TVHTP--LIPQ-TK-NLI--N--------AEVLKKCKKGVRVVNVARGGIVDENA  197 (333)
Q Consensus       157 ~l~~P--~t~~-t~-~li--~--------~~~~~~mk~gailIN~aRg~~vd~~a  197 (333)
                      +++.-  ..+. ++ .++  +        ...-+..+++++++.++.  ++|.-.
T Consensus        85 iitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t  137 (154)
T d1y7ta1          85 LLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNA  137 (154)
T ss_dssp             EECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHH
T ss_pred             EeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHH
Confidence            99862  2221 21 111  1        112233467888888754  566544

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=88.67  E-value=0.28  Score=39.98  Aligned_cols=102  Identities=22%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             EEEEEecChHHHHHHHHHhhC---CCEEEEE-cCCCCHHHHHhcCcccc----Chh-hh-ccCCCEEEEecCCchhhHhh
Q psy6348         100 TLAVLGLGRIGREVALRMQAF---GMKVIGF-DPMVSVEDAAKLNIASL----GLE-DI-WPLADYITVHTPLIPQTKNL  169 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~---G~~V~~~-d~~~~~~~a~~~gv~~~----~l~-el-l~~aDvV~l~~P~t~~t~~l  169 (333)
                      ||||=||||||+.+.+.+...   .++|++. |+. +.+....+ +++.    .++ ++ ..+-+.+++-    .....+
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~ayL-lkyDSvhG~~~~~i~~~~~~~~~in----g~~I~~   75 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHL-LKYDSILGTFDADVKTAGDSAISVD----GKVIKV   75 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT-CHHHHHHH-HHCCTTTCSCSSCEEECTTSEEEET----TEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC-CHHHHHHH-HhcCcccccccceeEecCCcceEEC----CEEEEE
Confidence            799999999999999987643   3677766 453 44433221 1111    111 11 1122333321    111122


Q ss_pred             ccHHHHhcc---CCCc-EEEEccCCcccchHhHHhhhhcCCce
Q psy6348         170 INAEVLKKC---KKGV-RVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       170 i~~~~~~~m---k~ga-ilIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ......+.+   +-|+ ++|.| .|.--+.+.+...|+.|--+
T Consensus        76 ~~~~~p~~i~W~~~gvDiViEc-TG~f~~~~~~~~hl~~Gakk  117 (172)
T d1rm4a1          76 VSDRNPVNLPWGDMGIDLVIEG-TGVFVDRDGAGKHLQAGAKK  117 (172)
T ss_dssp             ECCSCGGGSCHHHHTCCEEEEC-SSSCCBHHHHHHHHHTTCSC
T ss_pred             ecCCChHHCChhhcCCCEEEec-CceEccHHHHHHHHhcCCce
Confidence            211111111   1133 66665 77778888888889887543

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=88.65  E-value=0.58  Score=40.89  Aligned_cols=32  Identities=28%  Similarity=0.396  Sum_probs=28.6

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      ++|.|+|. |-||+.+++.|...|++|+++|+.
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            46888887 999999999999999999999864

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=88.51  E-value=0.47  Score=40.88  Aligned_cols=83  Identities=16%  Similarity=0.132  Sum_probs=57.3

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc-ccChhhhccCCCEEEEecCCchhhHhhcc---
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-SLGLEDIWPLADYITVHTPLIPQTKNLIN---  171 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~-~~~l~ell~~aDvV~l~~P~t~~t~~li~---  171 (333)
                      ..|++|++||+-    ...++++..|+++.++++.+..      |.. ...-++++++||+|++.-      .-++|   
T Consensus       120 ~~g~kV~vIG~~----P~v~~l~~~~~~~~VlE~~p~~------gd~p~~~~~~lLp~aD~viiTG------sTlvN~Tl  183 (251)
T d2h1qa1         120 VKGKKVGVVGHF----PHLESLLEPICDLSILEWSPEE------GDYPLPASEFILPECDYVYITC------ASVVDKTL  183 (251)
T ss_dssp             TTTSEEEEESCC----TTHHHHHTTTSEEEEEESSCCT------TCEEGGGHHHHGGGCSEEEEET------HHHHHTCH
T ss_pred             cCCCEEEEEecc----hhHHHHHhcCCcEEEEeCCCCC------CCCCchHHHHhhhcCCEEEEEe------chhhcCCH
Confidence            469999999874    4566677888999999987532      221 224678999999999864      12333   


Q ss_pred             HHHHhccCCCcEEEEccCCcccc
Q psy6348         172 AEVLKKCKKGVRVVNVARGGIVD  194 (333)
Q Consensus       172 ~~~~~~mk~gailIN~aRg~~vd  194 (333)
                      ...+++.|+...+|=++=....-
T Consensus       184 ~~LL~~~~~a~~vvl~GPS~p~~  206 (251)
T d2h1qa1         184 PRLLELSRNARRITLVGPGTPLA  206 (251)
T ss_dssp             HHHHHHTTTSSEEEEESTTCCCC
T ss_pred             HHHHHhCCcCCEEEEECCCcccC
Confidence            55778888887776665444443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.42  E-value=0.25  Score=41.62  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=31.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .||++-|.|. |.||+++|+.|...|++|+..|+..
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            4899999998 6699999999999999999988754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.41  E-value=0.24  Score=43.58  Aligned_cols=33  Identities=24%  Similarity=0.251  Sum_probs=28.7

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC--CEEEEEcCCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG--MKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G--~~V~~~d~~~  131 (333)
                      |+|+|||.|.-|...|..|+..|  .+|.++++..
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            79999999999999999887655  6999998764

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.39  E-value=0.31  Score=38.02  Aligned_cols=39  Identities=18%  Similarity=0.224  Sum_probs=33.3

Q ss_pred             ccccCCCEEEEE--ecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          93 GTELYGKTLAVL--GLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        93 g~~l~gktvGII--GlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +...-++.+-|+  |.|.||.++|..|+.+|.+|....+..
T Consensus        34 ~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~   74 (156)
T d1djqa2          34 GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH   74 (156)
T ss_dssp             TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence            445567788887  889999999999999999999998764

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.36  E-value=0.23  Score=41.30  Aligned_cols=32  Identities=25%  Similarity=0.354  Sum_probs=29.2

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC-EEEEEcCCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPMV  131 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~~  131 (333)
                      +|.|||.|..|..+|..|+..|. +|.++++..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~   35 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSS   35 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            79999999999999999999996 999998754

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=88.31  E-value=0.31  Score=39.57  Aligned_cols=35  Identities=23%  Similarity=0.502  Sum_probs=27.7

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEEEcCCCCHH
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIGFDPMVSVE  134 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~  134 (333)
                      +|||=||||||+.+.+.+... .++|.+.+.....+
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~   38 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDAD   38 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHH
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHH
Confidence            799999999999999988765 57888876544443

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=88.13  E-value=0.64  Score=39.48  Aligned_cols=34  Identities=26%  Similarity=0.290  Sum_probs=28.9

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ||.+-|-|. +-||+++|+.|...|++|+..|+..
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~   36 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGE   36 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            666677776 4699999999999999999999853

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.89  E-value=0.27  Score=40.55  Aligned_cols=34  Identities=18%  Similarity=0.178  Sum_probs=29.2

Q ss_pred             CEEEEEecChHHHHHHHHHh--hCCCEEEEEcCCCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQ--AFGMKVIGFDPMVS  132 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~--~~G~~V~~~d~~~~  132 (333)
                      .+|+|||.|..|...|..|+  .+|++|.+||....
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            38999999999999999885  46899999997653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=87.76  E-value=0.26  Score=36.83  Aligned_cols=33  Identities=27%  Similarity=0.012  Sum_probs=27.4

Q ss_pred             CCEEEEEecChHHHHHHHHHh---hCCCEEEEEcCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQ---AFGMKVIGFDPM  130 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~---~~G~~V~~~d~~  130 (333)
                      .+++.|||.|.+|-++|..+.   ..|.+|..+.+.
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~   53 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG   53 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceeccc
Confidence            479999999999999997654   458899888654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.61  E-value=0.24  Score=39.47  Aligned_cols=31  Identities=26%  Similarity=0.226  Sum_probs=29.1

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |.|||.|..|...|..|...|.+|++++...
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            7899999999999999999999999999864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=87.47  E-value=0.22  Score=41.89  Aligned_cols=31  Identities=23%  Similarity=0.271  Sum_probs=29.2

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |.|||.|-+|..+|..|...|.+|+++|+..
T Consensus         7 vvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999999754

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.30  E-value=0.24  Score=44.33  Aligned_cols=31  Identities=29%  Similarity=0.378  Sum_probs=28.6

Q ss_pred             CCEEEEEec-ChHHHHHHHHHhhCCCEEEEEc
Q psy6348          98 GKTLAVLGL-GRIGREVALRMQAFGMKVIGFD  128 (333)
Q Consensus        98 gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d  128 (333)
                      ||||.|.|. |-||+.+++.|...|++|+++|
T Consensus         1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            789999987 9999999999999999999997

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=87.16  E-value=0.36  Score=39.30  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=54.6

Q ss_pred             EEEEEecChHHHHHHHHHhh----CCCEEEEEcCCCCHHHHHh---cCccccChh-hhccCCCEEEEecCCchhhHhhcc
Q psy6348         100 TLAVLGLGRIGREVALRMQA----FGMKVIGFDPMVSVEDAAK---LNIASLGLE-DIWPLADYITVHTPLIPQTKNLIN  171 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~----~G~~V~~~d~~~~~~~a~~---~gv~~~~l~-ell~~aDvV~l~~P~t~~t~~li~  171 (333)
                      +|||=||||||+.+.+.+..    -..+|.+.+...+.+....   +.-..-.++ ++-...|.+++    +.....++.
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i----~g~~i~i~~   78 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAHGKFPGTVSVNGSYMVV----NGDKIRVDA   78 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTTEECSSCEEEETTEEEE----TTEEEEEEC
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccCCCcCceEEeccceEEE----CCEEEEEEe
Confidence            79999999999999998754    2467777754344433221   111000111 12223344433    112222332


Q ss_pred             HH---HHhccCCCc-EEEEccCCcccchHhHHhhhhcCCce
Q psy6348         172 AE---VLKKCKKGV-RVVNVARGGIVDENALLDSLKCGHCG  208 (333)
Q Consensus       172 ~~---~~~~mk~ga-ilIN~aRg~~vd~~aL~~aL~~g~i~  208 (333)
                      ..   .+..=+-|. ++|.| .|.--+.+.+...|+.|--+
T Consensus        79 ~~~p~~i~W~~~gvDiViEc-TG~f~~~~~a~~hl~~Gakk  118 (173)
T d1obfo1          79 NRNPAQLPWGALKVDVVLEC-TGFFTTKEKAGAHIKGGAKK  118 (173)
T ss_dssp             CSCGGGSCTTTTTCSEEEEC-SSSCCSHHHHHHHHHHTCSE
T ss_pred             cCCHHHCcccccccceEEEe-cccccCHHHHHHHhccCCcc
Confidence            22   222222233 45554 67777777888888877544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=87.00  E-value=0.2  Score=39.50  Aligned_cols=31  Identities=26%  Similarity=0.290  Sum_probs=26.8

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEE
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGF  127 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~  127 (333)
                      .+++|.|||-|.+|-++|..|+.+|.+|..+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~   32 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIR   32 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEE
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEE
Confidence            4689999999999999999999999865443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.99  E-value=0.47  Score=40.63  Aligned_cols=35  Identities=23%  Similarity=0.230  Sum_probs=30.0

Q ss_pred             CCCEEEEE--ecChHHHHHHHHHhh-CCCEEEEEcCCC
Q psy6348          97 YGKTLAVL--GLGRIGREVALRMQA-FGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGII--GlG~IG~~vA~~l~~-~G~~V~~~d~~~  131 (333)
                      .||+|+||  |-+-||.++|+.|.. .|.+|+.+++..
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~   38 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDV   38 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCH
Confidence            48999998  668899999999876 599999999965

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.74  E-value=0.18  Score=40.87  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=31.8

Q ss_pred             cCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          96 LYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        96 l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      -+.++|.|||-|..|...|..+..+|++|++++...
T Consensus         3 ~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           3 THNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             cccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            356799999999999999999999999999998543

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=86.64  E-value=0.43  Score=38.74  Aligned_cols=103  Identities=17%  Similarity=0.225  Sum_probs=53.5

Q ss_pred             EEEEEecChHHHHHHHHHhh-CCCEEEEE-cCCCCHHHHHh---cCccccChh-hhccCCCEEEEecCCchhhHhhcc--
Q psy6348         100 TLAVLGLGRIGREVALRMQA-FGMKVIGF-DPMVSVEDAAK---LNIASLGLE-DIWPLADYITVHTPLIPQTKNLIN--  171 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~-~G~~V~~~-d~~~~~~~a~~---~gv~~~~l~-ell~~aDvV~l~~P~t~~t~~li~--  171 (333)
                      ||||=||||||+.+.+.+.. -..+|.+. |+..+.+....   +.-..-.++ ++-..-+.+++-    .....+.+  
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~hG~~~~~v~~~~~~l~i~----~~~I~~~~~~   78 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVIN----GNPITIFQER   78 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEET----TEEEEEECCS
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccccCCcCCeEEEECCEEEEC----CEEEEEEECC
Confidence            79999999999999987764 35788777 55555543322   111000111 111122333331    11111221  


Q ss_pred             -HHHHhccCCCc-EEEEccCCcccchHhHHhhhhcCCc
Q psy6348         172 -AEVLKKCKKGV-RVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       172 -~~~~~~mk~ga-ilIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                       .+.+..=+-|. ++|. +.|.--+.+.+...|++|--
T Consensus        79 ~p~~i~W~~~~vDiViE-cTG~f~~~~~~~~hl~~gak  115 (169)
T d1u8fo1          79 DPSKIKWGDAGAEYVVE-STGVFTTMEKAGAHLQGGAK  115 (169)
T ss_dssp             SGGGCCTTTTTCCEEEE-CSSSCCSHHHHGGGGGGTCS
T ss_pred             ChhhCCccccCCCEEEE-ecceeccHHHHHHHHhcCCc
Confidence             12222222233 4444 47777788888778887743

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.61  E-value=0.25  Score=41.59  Aligned_cols=56  Identities=18%  Similarity=0.342  Sum_probs=40.1

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCCCHHHHHhcCcc-ccChhhhcc--CCCEEEEecC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMVSVEDAAKLNIA-SLGLEDIWP--LADYITVHTP  161 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~~~~~a~~~gv~-~~~l~ell~--~aDvV~l~~P  161 (333)
                      +||.|.|. |-||+.+++.|+..|++|++.|+..-       .+. ..+++++++  +.|+|+-+.-
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~-------D~~d~~~~~~~l~~~~~d~vih~a~   61 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDL-------DITNVLAVNKFFNEKKPNVVINCAA   61 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTC-------CTTCHHHHHHHHHHHCCSEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhc-------cCCCHHHHHHHHHHcCCCEEEeecc
Confidence            46899997 99999999999999999999998531       111 113445554  4687765543

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.22  E-value=0.38  Score=41.40  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=29.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |+|-|.|. |-||+.+++.|...|++|+++|+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            68888987 9999999999999999999999765

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.95  E-value=0.21  Score=40.16  Aligned_cols=35  Identities=20%  Similarity=0.219  Sum_probs=31.0

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      +++.|.|||-|..|..-|..++.+|++|+.+++..
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            35689999999999999999999999999998643

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.34  E-value=0.46  Score=36.56  Aligned_cols=34  Identities=32%  Similarity=0.539  Sum_probs=28.6

Q ss_pred             CCEEEEEecChHHHHHHHHH----hhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRM----QAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l----~~~G~~V~~~d~~~  131 (333)
                      ++++.|||-|.+|-++|..|    +++|.+|...++..
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            68999999999999998766    46899999887643

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.16  E-value=0.63  Score=37.51  Aligned_cols=37  Identities=30%  Similarity=0.533  Sum_probs=28.8

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEEE-cCCCCHHHH
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIGF-DPMVSVEDA  136 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~-d~~~~~~~a  136 (333)
                      ||||=||||||+.+.+.+... ..+|.+. |+..+.+..
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~   40 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHL   40 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHH
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHh
Confidence            799999999999999988754 5788776 566555543

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.03  E-value=0.33  Score=35.83  Aligned_cols=37  Identities=11%  Similarity=0.117  Sum_probs=30.9

Q ss_pred             ccccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcC
Q psy6348          93 GTELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP  129 (333)
Q Consensus        93 g~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~  129 (333)
                      +.+..||+|.|||.|.-|..+|.-+...+-+++...+
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            4578999999999999999999999887777654443

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=85.02  E-value=0.73  Score=39.45  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=27.3

Q ss_pred             EEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         100 TLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       100 tvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ||.|.|. |-||+.+++.|...|++|+++|...
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~   34 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLS   34 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            5777765 9999999999999999999998543

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=84.76  E-value=0.46  Score=38.70  Aligned_cols=36  Identities=19%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             cccCCCEEEEEecChHHHHHHHHHhhCCCEEEEEcC
Q psy6348          94 TELYGKTLAVLGLGRIGREVALRMQAFGMKVIGFDP  129 (333)
Q Consensus        94 ~~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~  129 (333)
                      .++.||+|.|||.|.-|..+|..+...+.++...-+
T Consensus        28 ~~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2          28 VDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CCCCCCEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            568999999999999999999999877887766543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=84.71  E-value=0.35  Score=39.38  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=28.2

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      |.|||.|..|...|..++.+|++|..++..
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~   34 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAK   34 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecc
Confidence            789999999999999999999999999864

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.02  E-value=0.62  Score=36.08  Aligned_cols=31  Identities=23%  Similarity=0.299  Sum_probs=27.0

Q ss_pred             CEEEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      .||.|||.|.+|-++|..|+. +.+|..+++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ-TYEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc-CCCEEEEecc
Confidence            379999999999999999976 6799998764

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=83.93  E-value=0.44  Score=40.17  Aligned_cols=31  Identities=23%  Similarity=0.439  Sum_probs=28.8

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |.|||.|-+|...|..|...|++|+++++..
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999998753

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.53  E-value=0.5  Score=41.34  Aligned_cols=34  Identities=21%  Similarity=0.243  Sum_probs=30.7

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ...|.|||.|..|-.+|..|+..|.+|.+++...
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~   40 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAG   40 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCC
Confidence            4469999999999999999999999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.05  E-value=0.45  Score=41.35  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             EEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .+.|||.|..|..+|.+|+..|.+|.+++.+.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~   34 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRN   34 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            58899999999999999999999999998765

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=82.92  E-value=0.52  Score=38.91  Aligned_cols=31  Identities=26%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |.|||.|..|...|..|+..|++|+.+++..
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~   35 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGN   35 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            7899999999999999999999999999765

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.83  E-value=0.66  Score=40.05  Aligned_cols=33  Identities=21%  Similarity=0.246  Sum_probs=28.8

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |++-|.|. |-||+.+++.|...|++|+++|+..
T Consensus         2 k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~   35 (339)
T d1n7ha_           2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRS   35 (339)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCC
Confidence            56777776 9999999999999999999999753

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=82.51  E-value=0.82  Score=37.04  Aligned_cols=102  Identities=18%  Similarity=0.233  Sum_probs=53.2

Q ss_pred             EEEEEecChHHHHHHHHHhhC-CCEEEEEcCCCCHHHHHhcCccccC----h-hhhccCCCEEEEecCCchhhHhhccHH
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-GMKVIGFDPMVSVEDAAKLNIASLG----L-EDIWPLADYITVHTPLIPQTKNLINAE  173 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-G~~V~~~d~~~~~~~a~~~gv~~~~----l-~ell~~aDvV~l~~P~t~~t~~li~~~  173 (333)
                      +|||=||||||+.+.+.+... ..+|.+.+.....+....+ +++.|    + .++-.+.|.+++-    .....+....
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayl-l~yDS~hG~~~~~v~~~~~~l~i~----g~~i~i~~~~   77 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHL-LKYDSVHGRLDAEVSVNGNNLVVN----GKEIIVKAER   77 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHH-HHEETTTEECSSCEEEETTEEEET----TEEEEEECCS
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhh-hcccccCCcccccccccCCCEEeC----CcceeeEecC
Confidence            799999999999999888644 5788777543344332211 11111    1 1111223443331    1111122222


Q ss_pred             HHhccC---CC-cEEEEccCCcccchHhHHhhhhcCCc
Q psy6348         174 VLKKCK---KG-VRVVNVARGGIVDENALLDSLKCGHC  207 (333)
Q Consensus       174 ~~~~mk---~g-ailIN~aRg~~vd~~aL~~aL~~g~i  207 (333)
                      ..+.+.   -| -++|.| +|.--+.+.+...|+.|--
T Consensus        78 ~p~~i~W~~~~vDiViEc-TG~f~t~~~~~~hl~~gak  114 (171)
T d3cmco1          78 DPENLAWGEIGVDIVVES-TGRFTKREDAAKHLEAGAK  114 (171)
T ss_dssp             SGGGCCTGGGTCCEEEEC-SSSCCBHHHHTHHHHTTCS
T ss_pred             CHHHccccccCCcEEEEe-cCccCCHHHHHHHHhCCCc
Confidence            111111   12 356665 6777788888888887753

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=82.44  E-value=0.48  Score=40.45  Aligned_cols=31  Identities=19%  Similarity=0.394  Sum_probs=28.1

Q ss_pred             EEEEEecChHHHHHHHHHhhCCC-EEEEEcCC
Q psy6348         100 TLAVLGLGRIGREVALRMQAFGM-KVIGFDPM  130 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~G~-~V~~~d~~  130 (333)
                      +|.|||.|.+|...|..|...|. +|.++|+.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~   34 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQG   34 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCC
Confidence            58999999999999999999997 69999875

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.44  E-value=0.68  Score=40.35  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=30.6

Q ss_pred             CCCEEEEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .-|++.|.|. |-||+.+++.|...|++|++.|+..
T Consensus        15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~   50 (341)
T d1sb8a_          15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFA   50 (341)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCS
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCC
Confidence            3468888886 9999999999999999999998644

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.25  E-value=0.88  Score=37.43  Aligned_cols=37  Identities=27%  Similarity=0.353  Sum_probs=27.0

Q ss_pred             EEEEEecChHHHHHHHHHhhC-----CCEEEE-EcCCCCHHHH
Q psy6348         100 TLAVLGLGRIGREVALRMQAF-----GMKVIG-FDPMVSVEDA  136 (333)
Q Consensus       100 tvGIIGlG~IG~~vA~~l~~~-----G~~V~~-~d~~~~~~~a  136 (333)
                      +|||=||||||+.+.+.+...     ..+|.+ -|+..+.+..
T Consensus         4 kigINGFGRIGR~vlR~~~~~~~~~~~i~iv~Ind~~~~~~~~   46 (190)
T d1k3ta1           4 KVGINGFGRIGRMVFQALCEDGLLGTEIDVVAVVDMNTDAEYF   46 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCBTTTEEEEEEEESCCCHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHcCCCCCCeEEEEEecCCCCHHHH
Confidence            799999999999999877543     246665 4676555544

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.23  E-value=0.48  Score=40.26  Aligned_cols=31  Identities=23%  Similarity=0.319  Sum_probs=28.4

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |.|||.|..|...|..|+..|++|++++...
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999998643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=82.17  E-value=0.8  Score=34.03  Aligned_cols=33  Identities=21%  Similarity=0.080  Sum_probs=26.8

Q ss_pred             CCEEEEEecChHHHHHHHHHhhCC---CEEEEEcCC
Q psy6348          98 GKTLAVLGLGRIGREVALRMQAFG---MKVIGFDPM  130 (333)
Q Consensus        98 gktvGIIGlG~IG~~vA~~l~~~G---~~V~~~d~~  130 (333)
                      .+++.|||.|.+|-++|..+.++|   .+|..+.+.
T Consensus        20 p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~   55 (117)
T d1aoga2          20 PRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG   55 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS
T ss_pred             CCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc
Confidence            579999999999999997766654   578887653

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.10  E-value=0.63  Score=40.42  Aligned_cols=33  Identities=21%  Similarity=0.295  Sum_probs=28.5

Q ss_pred             CEE-EEEec-ChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          99 KTL-AVLGL-GRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        99 ktv-GIIGl-G~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      ||| -|.|. |-||+.+++.|...|++|++.|+..
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence            577 46665 8999999999999999999999854

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=81.95  E-value=0.62  Score=37.44  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=27.5

Q ss_pred             CEEEEEecChHHHHHHHHHhhC--CCEEEEEcCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAF--GMKVIGFDPM  130 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~  130 (333)
                      +||.|||.|.+|-++|..|+.+  +.+|+.|++.
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~   34 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG   34 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4799999999999999999876  5689888754

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.75  E-value=0.44  Score=38.61  Aligned_cols=30  Identities=20%  Similarity=0.370  Sum_probs=28.2

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      +.|||.|..|...|..+..+|++|++++..
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~   35 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKR   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEec
Confidence            789999999999999999999999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.72  E-value=0.56  Score=38.16  Aligned_cols=31  Identities=16%  Similarity=0.325  Sum_probs=28.8

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      |.|||.|..|...|..+..+|++|..++...
T Consensus         8 viVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998653

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.39  E-value=0.7  Score=38.31  Aligned_cols=33  Identities=15%  Similarity=0.079  Sum_probs=28.1

Q ss_pred             CCCEEEEEecChHHHHHHHHHhhCCCEEEEEcCCC
Q psy6348          97 YGKTLAVLGLGRIGREVALRMQAFGMKVIGFDPMV  131 (333)
Q Consensus        97 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  131 (333)
                      .|.+|..+|+|.  ...+..|...|++|+|+|.+.
T Consensus        45 ~~~rvLd~GCG~--G~~a~~LA~~G~~V~gvD~S~   77 (229)
T d2bzga1          45 SGLRVFFPLCGK--AVEMKWFADRGHSVVGVEISE   77 (229)
T ss_dssp             CSCEEEETTCTT--CTHHHHHHHTTCEEEEECSCH
T ss_pred             CCCEEEEeCCCC--cHHHHHHHhCCCcEEEEeCCH
Confidence            678999999998  355777788899999999865

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=81.32  E-value=0.7  Score=36.23  Aligned_cols=30  Identities=17%  Similarity=0.238  Sum_probs=28.0

Q ss_pred             EEEEecChHHHHHHHHHhhCCCEEEEEcCC
Q psy6348         101 LAVLGLGRIGREVALRMQAFGMKVIGFDPM  130 (333)
Q Consensus       101 vGIIGlG~IG~~vA~~l~~~G~~V~~~d~~  130 (333)
                      |.|||-|..|...|..+..+|++|+.+++.
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~~   33 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGER   33 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEEe
Confidence            789999999999999999999999999864

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.28  E-value=0.41  Score=39.11  Aligned_cols=34  Identities=18%  Similarity=0.128  Sum_probs=29.3

Q ss_pred             CEEEEEecChHHHHHHHHHhhCC-------CEEEEEcCCCC
Q psy6348          99 KTLAVLGLGRIGREVALRMQAFG-------MKVIGFDPMVS  132 (333)
Q Consensus        99 ktvGIIGlG~IG~~vA~~l~~~G-------~~V~~~d~~~~  132 (333)
                      .+|+|||.|.-|-+.|..|...|       ++|.+|++...
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            48999999999999999987766       68999987653

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=81.15  E-value=0.65  Score=40.36  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=28.2

Q ss_pred             CEEEEEec-ChHHHHHHHHHhhCC-CEEEEEcCCC
Q psy6348          99 KTLAVLGL-GRIGREVALRMQAFG-MKVIGFDPMV  131 (333)
Q Consensus        99 ktvGIIGl-G~IG~~vA~~l~~~G-~~V~~~d~~~  131 (333)
                      +||.|.|. |-||+.+++.|.+.| .+|++.|...
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~   35 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGS   35 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCC
Confidence            36888887 999999999998888 5999998754